[shovill] Hello administrator [shovill] You ran: /home/administrator/conda2/envs/shovill/bin/shovill --force --outdir ./shovill/Enterobacter/ --R1 ./fq/incl550_R1.fastq --R2 ./fq/incl550_R2.fastq --gsize 3M --cpus 30 --ram 240 --minlen 200 --kmers 31,41,51,61,71,81,91,101,111,121 --assembler spades [shovill] This is shovill 1.1.0 [shovill] Written by Torsten Seemann [shovill] Homepage is https://github.com/tseemann/shovill [shovill] Operating system is linux [shovill] Perl version is v5.26.2 [shovill] Machine has 32 CPU cores and 251.58 GB RAM [shovill] Using bwa - /home/administrator/conda2/envs/shovill/bin/bwa | Version: 0.7.17-r1188 [shovill] Using flash - /home/administrator/conda2/envs/shovill/bin/flash | FLASH v1.2.11 [shovill] Using java - /home/administrator/conda2/envs/shovill/bin/java | openjdk version "11.0.8-internal" 2020-07-14 [shovill] Using kmc - /home/administrator/conda2/envs/shovill/bin/kmc | K-Mer Counter (KMC) ver. 3.1.1 (2019-05-19) [shovill] Using lighter - /home/administrator/conda2/envs/shovill/bin/lighter | Lighter v1.1.2 [shovill] Using megahit - /home/administrator/conda2/envs/shovill/bin/megahit | MEGAHIT v1.2.9 [shovill] Using megahit_toolkit - /home/administrator/conda2/envs/shovill/bin/megahit_toolkit | v1.2.9 [shovill] Using pigz - /home/administrator/conda2/envs/shovill/bin/pigz | pigz 2.3.4 [shovill] Using pilon - /home/administrator/conda2/envs/shovill/bin/pilon | Pilon version 1.23 Mon Nov 26 16:04:05 2018 -0500 [shovill] Using samclip - /home/administrator/conda2/envs/shovill/bin/samclip | samclip 0.4.0 [shovill] Using samtools - /home/administrator/conda2/envs/shovill/bin/samtools | Version: 1.10 (using htslib 1.10.2) [shovill] Using seqtk - /home/administrator/conda2/envs/shovill/bin/seqtk | Version: 1.3-r106 [shovill] Using skesa - /home/administrator/conda2/envs/shovill/bin/skesa | SKESA 2.4.0 [shovill] Using spades.py - /home/administrator/conda2/envs/shovill/bin/spades.py | SPAdes genome assembler v3.14.1 [shovill] Using trimmomatic - /home/administrator/conda2/envs/shovill/bin/trimmomatic | 0.39 [shovill] Using velvetg - /home/administrator/conda2/envs/shovill/bin/velvetg | Version 1.2.10 [shovill] Using velveth - /home/administrator/conda2/envs/shovill/bin/velveth | Version 1.2.10 [shovill] Found spades version: 003014000 [shovill] Will use spades 003014000 options: --isolate and --merged [shovill] Forced overwrite of existing --outdir ./shovill/Enterobacter/ [shovill] Using tempdir: /tmp/q8rxSp2QI6 [shovill] Changing into folder: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter [shovill] Collecting raw read statistics with 'seqtk' [shovill] Running: seqtk fqchk -q3 \/DATB\/markop\/CPB\/CPB_rcf_DNAseq\/fq\/incl550_R1\.fastq >/tmp/pofw8m8M4y 2>&1 | sed 's/^/[seqtk] /' | tee -a shovill.log [shovill] Read stats: min_len = 150 [shovill] Read stats: max_len = 150 [shovill] Read stats: total_bp = 10224841800 [shovill] Read stats: avg_len = 150 [shovill] Using genome size 3000000 bp [shovill] Estimated sequencing depth: 3408 x [shovill] Subsampling reads by factor 0.044 to get from 3408x to 150x [shovill] Running: seqtk sample \/DATB\/markop\/CPB\/CPB_rcf_DNAseq\/fq\/incl550_R1\.fastq 0.044 | pigz --fast -c -p 30 > R1.sub.fq.gz 2>&1 | sed 's/^/[seqtk] /' | tee -a shovill.log [shovill] Running: seqtk sample \/DATB\/markop\/CPB\/CPB_rcf_DNAseq\/fq\/incl550_R2\.fastq 0.044 | pigz --fast -c -p 30 > R2.sub.fq.gz 2>&1 | sed 's/^/[seqtk] /' | tee -a shovill.log [shovill] Appending -Xmx240g to _JAVA_OPTIONS [shovill] Running: ln -sf R1\.sub\.fq\.gz R1.fq.gz 2>&1 | sed 's/^/[ln] /' | tee -a shovill.log [shovill] Running: ln -sf R2\.sub\.fq\.gz R2.fq.gz 2>&1 | sed 's/^/[ln] /' | tee -a shovill.log [shovill] Average read length looks like 150 bp [shovill] Examing provided --kmers 31,41,51,61,71,81,91,101,111,121 [shovill] Using kmers: 31,41,51,61,71,81,91,101,111,121 [shovill] Correcting reads with 'Lighter' [shovill] Running: lighter -od . -r R1.fq.gz -r R2.fq.gz -K 32 3000000 -t 30 -maxcor 1 2>&1 | sed 's/^/[lighter] /' | tee -a shovill.log [lighter] [2021-01-24 15:15:25] =============Start==================== [lighter] [2021-01-24 15:15:25] Scanning the input files to infer alpha(sampling rate) [lighter] [2021-01-24 15:15:30] Average coverage is 149.956 and alpha is 0.047 [lighter] [2021-01-24 15:15:32] Bad quality threshold is ";" [lighter] [2021-01-24 15:15:54] Finish sampling kmers [lighter] [2021-01-24 15:15:54] Bloom filter A's false positive rate: 0.034415 [lighter] [2021-01-24 15:16:07] Finish storing trusted kmers [lighter] [2021-01-24 15:16:31] Finish error correction [lighter] Processed 2999126 reads: [lighter] 2395077 are error-free [lighter] Corrected 826726 bases(1.368641 corrections for reads with errors) [lighter] Trimmed 0 reads with average trimmed bases 0.000000 [lighter] Discard 0 reads [shovill] Overlapping/stitching PE reads with 'FLASH' [shovill] Running: flash -m 20 -M 150 -d . -o flash -z -t 30 R1.cor.fq.gz R2.cor.fq.gz 2>&1 | sed 's/^//' | tee -a shovill.log [FLASH] Starting FLASH v1.2.11 [FLASH] Fast Length Adjustment of SHort reads [FLASH] [FLASH] Input files: [FLASH] R1.cor.fq.gz [FLASH] R2.cor.fq.gz [FLASH] [FLASH] Output files: [FLASH] ./flash.extendedFrags.fastq.gz [FLASH] ./flash.notCombined_1.fastq.gz [FLASH] ./flash.notCombined_2.fastq.gz [FLASH] ./flash.hist [FLASH] ./flash.histogram [FLASH] [FLASH] Parameters: [FLASH] Min overlap: 20 [FLASH] Max overlap: 150 [FLASH] Max mismatch density: 0.250000 [FLASH] Allow "outie" pairs: false [FLASH] Cap mismatch quals: false [FLASH] Combiner threads: 30 [FLASH] Input format: FASTQ, phred_offset=33 [FLASH] Output format: FASTQ, phred_offset=33, gzip [FLASH] [FLASH] Starting reader and writer threads [FLASH] Starting 30 combiner threads [FLASH] Processed 25000 read pairs [FLASH] Processed 50000 read pairs [FLASH] Processed 75000 read pairs [FLASH] Processed 100000 read pairs [FLASH] Processed 125000 read pairs [FLASH] Processed 150000 read pairs [FLASH] Processed 175000 read pairs [FLASH] Processed 200000 read pairs [FLASH] Processed 225000 read pairs [FLASH] Processed 250000 read pairs [FLASH] Processed 275000 read pairs [FLASH] Processed 300000 read pairs [FLASH] Processed 325000 read pairs [FLASH] Processed 350000 read pairs [FLASH] Processed 375000 read pairs [FLASH] Processed 400000 read pairs [FLASH] Processed 425000 read pairs [FLASH] Processed 450000 read pairs [FLASH] Processed 475000 read pairs [FLASH] Processed 500000 read pairs [FLASH] Processed 525000 read pairs [FLASH] Processed 550000 read pairs [FLASH] Processed 575000 read pairs [FLASH] Processed 600000 read pairs [FLASH] Processed 625000 read pairs [FLASH] Processed 650000 read pairs [FLASH] Processed 675000 read pairs [FLASH] Processed 700000 read pairs [FLASH] Processed 725000 read pairs [FLASH] Processed 750000 read pairs [FLASH] Processed 775000 read pairs [FLASH] Processed 800000 read pairs [FLASH] Processed 825000 read pairs [FLASH] Processed 850000 read pairs [FLASH] Processed 875000 read pairs [FLASH] Processed 900000 read pairs [FLASH] Processed 925000 read pairs [FLASH] Processed 950000 read pairs [FLASH] Processed 975000 read pairs [FLASH] Processed 1000000 read pairs [FLASH] Processed 1025000 read pairs [FLASH] Processed 1050000 read pairs [FLASH] Processed 1075000 read pairs [FLASH] Processed 1100000 read pairs [FLASH] Processed 1125000 read pairs [FLASH] Processed 1150000 read pairs [FLASH] Processed 1175000 read pairs [FLASH] Processed 1200000 read pairs [FLASH] Processed 1225000 read pairs [FLASH] Processed 1250000 read pairs [FLASH] Processed 1275000 read pairs [FLASH] Processed 1300000 read pairs [FLASH] Processed 1325000 read pairs [FLASH] Processed 1350000 read pairs [FLASH] Processed 1375000 read pairs [FLASH] Processed 1400000 read pairs [FLASH] Processed 1425000 read pairs [FLASH] Processed 1450000 read pairs [FLASH] Processed 1475000 read pairs [FLASH] Processed 1499563 read pairs [FLASH] [FLASH] Read combination statistics: [FLASH] Total pairs: 1499563 [FLASH] Combined pairs: 693728 [FLASH] Uncombined pairs: 805835 [FLASH] Percent combined: 46.26% [FLASH] [FLASH] Writing histogram files. [FLASH] [FLASH] FLASH v1.2.11 complete! [FLASH] 53.116 seconds elapsed [shovill] Assembling reads with 'spades' [shovill] Running: spades.py -1 flash.notCombined_1.fastq.gz -2 flash.notCombined_2.fastq.gz --isolate --threads 30 --memory 240 -o spades --tmp-dir /tmp/q8rxSp2QI6 -k 31,41,51,61,71,81,91,101,111,121 --merged flash.extendedFrags.fastq.gz 2>&1 | sed 's/^/[spades] /' | tee -a shovill.log [spades] Command line: /home/administrator/conda2/envs/shovill/bin/spades.py -1 /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/flash.notCombined_1.fastq.gz -2 /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/flash.notCombined_2.fastq.gz --isolate --threads 30 --memory 240 -o /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades --tmp-dir /tmp/q8rxSp2QI6 -k 31,41,51,61,71,81,91,101,111,121 --merged /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/flash.extendedFrags.fastq.gz [spades] [spades] System information: [spades] SPAdes version: 3.14.1 [spades] Python version: 3.8.5 [spades] OS: Linux-4.13.0-41-generic-x86_64-with-glibc2.10 [spades] [spades] Output dir: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades [spades] Mode: ONLY assembling (without read error correction) [spades] Debug mode is turned OFF [spades] [spades] Dataset parameters: [spades] Isolate mode [spades] Reads: [spades] Library number: 1, library type: paired-end [spades] orientation: fr [spades] left reads: ['/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/flash.notCombined_1.fastq.gz'] [spades] right reads: ['/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/flash.notCombined_2.fastq.gz'] [spades] interlaced reads: not specified [spades] single reads: not specified [spades] merged reads: ['/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/flash.extendedFrags.fastq.gz'] [spades] Assembly parameters: [spades] k: [31, 41, 51, 61, 71, 81, 91, 101, 111, 121] [spades] Repeat resolution is enabled [spades] Mismatch careful mode is turned OFF [spades] MismatchCorrector will be SKIPPED [spades] Coverage cutoff is turned OFF [spades] Other parameters: [spades] Dir for temp files: /tmp/q8rxSp2QI6 [spades] Threads: 30 [spades] Memory limit (in Gb): 240 [spades] [spades] [spades] ======= SPAdes pipeline started. Log can be found here: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/spades.log [spades] [spades] /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/flash.notCombined_1.fastq.gz: max reads length: 150 [spades] /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/flash.notCombined_2.fastq.gz: max reads length: 150 [spades] Files with merged reads were ignored. [spades] [spades] Reads length: 150 [spades] [spades] [spades] ===== Before start started. [spades] [spades] [spades] ===== Assembling started. [spades] [spades] [spades] ===== K31 started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/spades-core /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K31/configs/config.info /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K31/configs/isolate_mode.info [spades] [spades] WARNING: Try to use logger before create one. Level=INFO. Message=Additional contigs is tmp_contigs.fasta [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K31/configs/config.info [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K31/configs/isolate_mode.info [spades] 0:00:00.000 7M / 9M INFO General (memory_limit.cpp : 49) Memory limit set to 240 Gb [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 85) Starting SPAdes, built from N/A, git revision N/A [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 86) Maximum k-mer length: 128 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 87) Assembling dataset (/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/dataset.info) with K=31 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 88) Maximum # of threads to use (adjusted due to OMP capabilities): 30 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 194) SPAdes started [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 201) Starting from stage: read_conversion [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 207) Two-step RR enabled: 0 [spades] 0:00:00.001 7M / 9M INFO StageManager (stage.cpp : 166) STAGE == Binary Read Conversion [spades] 0:00:00.003 7M / 9M INFO General (read_converter.cpp : 72) Converting reads to binary format for library #0 (takes a while) [spades] 0:00:00.003 7M / 9M INFO General (read_converter.cpp : 73) Converting paired reads [spades] 0:00:00.928 204M / 204M INFO General (binary_converter.cpp : 96) 16384 reads processed [spades] 0:00:01.003 222M / 222M INFO General (binary_converter.cpp : 96) 32768 reads processed [spades] 0:00:01.173 262M / 262M INFO General (binary_converter.cpp : 96) 65536 reads processed [spades] 0:00:01.469 311M / 311M INFO General (binary_converter.cpp : 96) 131072 reads processed [spades] 0:00:02.556 423M / 423M INFO General (binary_converter.cpp : 96) 262144 reads processed [spades] 0:00:03.843 576M / 576M INFO General (binary_converter.cpp : 96) 524288 reads processed [spades] 0:00:05.343 712M / 712M INFO General (binary_converter.cpp : 111) 805835 reads written [spades] 0:00:05.347 688M / 708M INFO General (read_converter.cpp : 81) Converting single reads [spades] 0:00:05.348 698M / 708M INFO General (binary_converter.cpp : 111) 0 reads written [spades] 0:00:05.349 688M / 708M INFO General (read_converter.cpp : 87) Converting merged reads [spades] 0:00:06.009 775M / 775M INFO General (binary_converter.cpp : 96) 16384 reads processed [spades] 0:00:06.051 779M / 779M INFO General (binary_converter.cpp : 96) 32768 reads processed [spades] 0:00:06.137 788M / 788M INFO General (binary_converter.cpp : 96) 65536 reads processed [spades] 0:00:06.652 837M / 837M INFO General (binary_converter.cpp : 96) 131072 reads processed [spades] 0:00:07.406 881M / 889M INFO General (binary_converter.cpp : 96) 262144 reads processed [spades] 0:00:09.179 961M / 970M INFO General (binary_converter.cpp : 96) 524288 reads processed [spades] 0:00:10.174 986M / 1004M INFO General (binary_converter.cpp : 111) 693728 reads written [spades] 0:00:10.215 91M / 1004M INFO StageManager (stage.cpp : 166) STAGE == de Bruijn graph construction [spades] 0:00:10.220 91M / 1004M INFO General (construction.cpp : 150) Max read length 280 [spades] 0:00:10.221 91M / 1004M INFO General (construction.cpp : 153) Max read length without merged 150 [spades] 0:00:10.222 91M / 1004M INFO General (construction.cpp : 156) Average read length 178.044 [spades] 0:00:10.223 91M / 1004M INFO General (stage.cpp : 113) PROCEDURE == k+1-mer counting [spades] 0:00:10.232 89M / 1004M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 900 files using 30 threads. This might take a while. [spades] 0:00:10.233 89M / 1004M INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:10.234 89M / 1004M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66664 Gb [spades] 0:00:10.235 89M / 1004M INFO General (kmer_splitters.hpp : 97) Using cell size of 74565 [spades] 0:00:14.170 21G / 21G INFO General (kmer_splitters.hpp : 287) Processed 4610796 reads [spades] 0:00:14.409 265M / 3G INFO General (kmer_splitters.hpp : 293) Used 4610796 reads [spades] 0:00:14.409 265M / 3G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:14.807 256M / 3G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 13942131 kmers in total. [spades] 0:00:14.808 256M / 3G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:14.942 249M / 3G INFO General (stage.cpp : 113) PROCEDURE == Extension index construction [spades] 0:00:14.943 249M / 3G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:14.943 249M / 3G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:14.944 249M / 3G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:14.945 249M / 3G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66662 Gb [spades] 0:00:14.945 249M / 3G INFO General (kmer_splitters.hpp : 97) Using cell size of 139810 [spades] 0:00:15.550 18G / 18G INFO General (kmer_splitters.hpp : 364) Processed 13942131 kmers [spades] 0:00:15.551 18G / 18G INFO General (kmer_splitters.hpp : 369) Used 13942131 kmers. [spades] 0:00:15.617 233M / 3G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:15.852 233M / 3G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 13891615 kmers in total. [spades] 0:00:15.854 233M / 3G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:15.970 233M / 3G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:16.308 245M / 3G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:16.492 245M / 3G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6449792 bytes occupied (3.71435 bits per kmer). [spades] 0:00:16.518 259M / 3G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 99) Building k-mer extensions from k+1-mers [spades] 0:00:16.968 259M / 3G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 103) Building k-mer extensions from k+1-mers finished. [spades] 0:00:16.971 251M / 3G INFO General (stage.cpp : 113) PROCEDURE == Early tip clipping [spades] 0:00:16.972 251M / 3G INFO General (construction.cpp : 293) Early tip clipper length bound set as (RL - K) [spades] 0:00:16.973 251M / 3G INFO Early tip clipping (early_simplification.hpp : 28) Early tip clipping [spades] 0:00:17.464 259M / 3G INFO Early tip clipping (early_simplification.hpp : 63) #tipped junctions: 71841 [spades] 0:00:17.468 259M / 3G INFO Early tip clipping (early_simplification.hpp : 74) Clipped tips: 72084 [spades] 0:00:17.479 259M / 3G INFO Early tip clipping (early_simplification.hpp : 30) 2552668 32-mers were removed by early tip clipper [spades] 0:00:17.480 259M / 3G INFO General (stage.cpp : 113) PROCEDURE == Condensing graph [spades] 0:00:17.482 259M / 3G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 354) Extracting unbranching paths [spades] 0:00:17.998 208M / 3G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 373) Extracting unbranching paths finished. 224094 sequences extracted [spades] 0:00:18.286 208M / 3G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 309) Collecting perfect loops [spades] 0:00:18.422 208M / 3G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 342) Collecting perfect loops finished. 3 loops collected [spades] 0:00:19.318 235M / 3G INFO General (stage.cpp : 113) PROCEDURE == Filling coverage indices (PHM) [spades] 0:00:19.319 235M / 3G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:19.320 235M / 3G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:19.539 240M / 3G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6480456 bytes occupied (3.71849 bits per kmer). [spades] 0:00:19.572 296M / 3G INFO General (construction.cpp : 429) Collecting k-mer coverage information from reads, this takes a while. [spades] 0:00:24.581 295M / 3G INFO General (construction.cpp : 549) Filling coverage and flanking coverage from PHM [spades] 0:00:24.935 295M / 3G INFO General (construction.cpp : 505) Processed 448175 edges [spades] 0:00:24.987 225M / 3G INFO StageManager (stage.cpp : 166) STAGE == EC Threshold Finding [spades] 0:00:24.989 225M / 3G INFO General (kmer_coverage_model.cpp : 181) Kmer coverage valley at: 32 [spades] 0:00:24.989 225M / 3G INFO General (kmer_coverage_model.cpp : 201) K-mer histogram maximum: 33 [spades] 0:00:24.990 225M / 3G WARN General (kmer_coverage_model.cpp : 218) Too many erroneous kmers, the estimates might be unreliable [spades] 0:00:24.991 225M / 3G INFO General (kmer_coverage_model.cpp : 237) Estimated median coverage: 33. Coverage mad: 19.0443 [spades] 0:00:24.991 225M / 3G INFO General (kmer_coverage_model.cpp : 259) Fitting coverage model [spades] 0:00:25.033 225M / 3G INFO General (kmer_coverage_model.cpp : 295) ... iteration 2 [spades] 0:00:25.151 225M / 3G INFO General (kmer_coverage_model.cpp : 295) ... iteration 4 [spades] 0:00:25.524 225M / 3G INFO General (kmer_coverage_model.cpp : 295) ... iteration 8 [spades] 0:00:26.046 171M / 3G INFO General (kmer_coverage_model.cpp : 295) ... iteration 16 [spades] 0:00:26.799 170M / 3G INFO General (kmer_coverage_model.cpp : 309) Fitted mean coverage: 61.9446. Fitted coverage std. dev: 43.7778 [spades] 0:00:26.799 170M / 3G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 2 [spades] 0:00:26.801 170M / 3G INFO General (kmer_coverage_model.cpp : 334) Probability of erroneous kmer at valley: 1 [spades] 0:00:26.801 170M / 3G INFO General (kmer_coverage_model.cpp : 358) Preliminary threshold calculated as: 53 [spades] 0:00:26.802 170M / 3G INFO General (kmer_coverage_model.cpp : 362) Threshold adjusted to: 31 [spades] 0:00:26.803 170M / 3G INFO General (kmer_coverage_model.cpp : 375) Estimated genome size (ignoring repeats): 3564732 [spades] 0:00:26.803 170M / 3G INFO General (genomic_info_filler.cpp : 53) Mean coverage was calculated as 61.9446 [spades] 0:00:26.804 170M / 3G INFO General (genomic_info_filler.cpp : 68) EC coverage threshold value was calculated as 31 [spades] 0:00:26.805 170M / 3G INFO General (genomic_info_filler.cpp : 69) Trusted kmer low bound: 0 [spades] 0:00:26.805 170M / 3G INFO StageManager (stage.cpp : 166) STAGE == Raw Simplification [spades] 0:00:26.806 170M / 3G INFO General (simplification.cpp : 128) PROCEDURE == InitialCleaning [spades] 0:00:26.807 170M / 3G INFO General (graph_simplification.hpp : 671) Flanking coverage based disconnection disabled [spades] 0:00:26.807 170M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Self conjugate edge remover [spades] 0:00:26.818 170M / 3G INFO Simplification (parallel_processing.hpp : 167) Self conjugate edge remover triggered 0 times [spades] 0:00:26.819 170M / 3G INFO StageManager (stage.cpp : 166) STAGE == Simplification [spades] 0:00:26.820 170M / 3G INFO General (simplification.cpp : 383) Graph simplification started [spades] 0:00:26.821 170M / 3G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:26.822 170M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 1 [spades] 0:00:26.822 170M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:26.862 165M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1233 times [spades] 0:00:26.863 165M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.279 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 38998 times [spades] 0:00:28.281 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.491 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 8992 times [spades] 0:00:28.493 152M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 2 [spades] 0:00:28.493 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.526 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1155 times [spades] 0:00:28.527 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.553 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 382 times [spades] 0:00:28.554 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.602 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 2463 times [spades] 0:00:28.602 152M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 3 [spades] 0:00:28.603 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.606 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 43 times [spades] 0:00:28.606 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.613 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 67 times [spades] 0:00:28.613 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.633 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 1009 times [spades] 0:00:28.634 152M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 4 [spades] 0:00:28.634 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.636 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 5 times [spades] 0:00:28.636 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.640 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 38 times [spades] 0:00:28.640 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.654 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 708 times [spades] 0:00:28.655 152M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 5 [spades] 0:00:28.655 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.656 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 5 times [spades] 0:00:28.657 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.659 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 8 times [spades] 0:00:28.659 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.675 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 840 times [spades] 0:00:28.676 152M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 6 [spades] 0:00:28.677 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.678 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 3 times [spades] 0:00:28.678 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.680 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 5 times [spades] 0:00:28.680 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.697 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 883 times [spades] 0:00:28.698 152M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 7 [spades] 0:00:28.698 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.699 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.700 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.701 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 4 times [spades] 0:00:28.702 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.720 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 963 times [spades] 0:00:28.720 152M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 8 [spades] 0:00:28.721 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.722 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.723 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.724 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:28.724 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.741 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 915 times [spades] 0:00:28.742 152M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 9 [spades] 0:00:28.743 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.744 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:28.744 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.745 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:28.746 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.763 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 933 times [spades] 0:00:28.764 152M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 10 [spades] 0:00:28.764 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.765 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:28.766 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.767 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 2 times [spades] 0:00:28.767 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.787 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 955 times [spades] 0:00:28.788 152M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 11 [spades] 0:00:28.788 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.796 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 3 times [spades] 0:00:28.797 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.834 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 2 times [spades] 0:00:28.836 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.843 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:28.844 152M / 3G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 12 [spades] 0:00:28.846 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.847 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.848 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.849 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.849 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.850 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:28.856 152M / 3G INFO StageManager (stage.cpp : 166) STAGE == Simplification Cleanup [spades] 0:00:28.857 152M / 3G INFO General (simplification.cpp : 196) PROCEDURE == Post simplification [spades] 0:00:28.858 152M / 3G INFO General (graph_simplification.hpp : 456) Disconnection of relatively low covered edges disabled [spades] 0:00:28.859 152M / 3G INFO General (graph_simplification.hpp : 493) Complex tip clipping disabled [spades] 0:00:28.860 152M / 3G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:28.861 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.868 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.870 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.904 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.906 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.913 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.915 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.949 152M / 3G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.951 152M / 3G INFO General (simplification.cpp : 343) Disrupting self-conjugate edges [spades] 0:00:28.994 152M / 3G INFO Simplification (parallel_processing.hpp : 165) Running Removing isolated edges [spades] 0:00:29.047 150M / 3G INFO Simplification (parallel_processing.hpp : 167) Removing isolated edges triggered 14830 times [spades] 0:00:29.048 150M / 3G INFO General (simplification.cpp : 496) Counting average coverage [spades] 0:00:29.065 150M / 3G INFO General (simplification.cpp : 502) Average coverage = 49.5381 [spades] 0:00:29.066 150M / 3G INFO StageManager (stage.cpp : 166) STAGE == Contig Output [spades] 0:00:29.066 150M / 3G INFO General (read_converter.cpp : 102) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K31/simplified_contigs [spades] 0:00:29.073 154M / 3G INFO General (binary_converter.cpp : 96) 16384 reads processed [spades] 0:00:29.078 154M / 3G INFO General (binary_converter.cpp : 96) 32768 reads processed [spades] 0:00:29.100 154M / 3G INFO General (binary_converter.cpp : 111) 33730 reads written [spades] 0:00:29.103 155M / 3G INFO General (pipeline.cpp : 259) SPAdes finished [spades] 0:00:29.167 154M / 3G INFO General (main.cpp : 107) Assembling time: 0 hours 0 minutes 29 seconds [spades] [spades] ===== K31 finished. [spades] [spades] [spades] ===== K41 started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/spades-core /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K41/configs/config.info /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K41/configs/isolate_mode.info [spades] [spades] WARNING: Try to use logger before create one. Level=INFO. Message=Additional contigs is /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K31/simplified_contigs [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K41/configs/config.info [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K41/configs/isolate_mode.info [spades] 0:00:00.001 7M / 9M INFO General (memory_limit.cpp : 49) Memory limit set to 240 Gb [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 85) Starting SPAdes, built from N/A, git revision N/A [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 86) Maximum k-mer length: 128 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 87) Assembling dataset (/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/dataset.info) with K=41 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 88) Maximum # of threads to use (adjusted due to OMP capabilities): 30 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 194) SPAdes started [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 201) Starting from stage: read_conversion [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 207) Two-step RR enabled: 0 [spades] 0:00:00.001 7M / 9M INFO StageManager (stage.cpp : 166) STAGE == Binary Read Conversion [spades] 0:00:00.003 7M / 9M INFO General (read_converter.cpp : 53) Binary reads detected [spades] 0:00:00.005 8M / 9M INFO StageManager (stage.cpp : 166) STAGE == de Bruijn graph construction [spades] 0:00:00.005 8M / 9M INFO General (construction.cpp : 115) Contigs from previous K will be used: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K31/simplified_contigs [spades] 0:00:00.009 9M / 10M INFO General (construction.cpp : 150) Max read length 280 [spades] 0:00:00.009 9M / 10M INFO General (construction.cpp : 153) Max read length without merged 150 [spades] 0:00:00.009 9M / 10M INFO General (construction.cpp : 156) Average read length 178.044 [spades] 0:00:00.009 9M / 10M INFO General (stage.cpp : 113) PROCEDURE == k+1-mer counting [spades] 0:00:00.009 9M / 10M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 900 files using 30 threads. This might take a while. [spades] 0:00:00.010 9M / 10M INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:00.010 9M / 10M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66665 Gb [spades] 0:00:00.010 9M / 10M INFO General (kmer_splitters.hpp : 97) Using cell size of 37282 [spades] 0:00:04.281 21G / 21G INFO General (kmer_splitters.hpp : 287) Processed 4678256 reads [spades] 0:00:04.691 391M / 6G INFO General (kmer_splitters.hpp : 293) Used 4678256 reads [spades] 0:00:04.692 391M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:05.141 393M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14345174 kmers in total. [spades] 0:00:05.142 393M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:05.379 393M / 6G INFO General (stage.cpp : 113) PROCEDURE == Extension index construction [spades] 0:00:05.380 393M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:05.380 393M / 6G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:05.381 393M / 6G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:05.382 393M / 6G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66662 Gb [spades] 0:00:05.382 393M / 6G INFO General (kmer_splitters.hpp : 97) Using cell size of 69905 [spades] 0:00:06.116 18G / 18G INFO General (kmer_splitters.hpp : 364) Processed 14345174 kmers [spades] 0:00:06.117 18G / 18G INFO General (kmer_splitters.hpp : 369) Used 14345174 kmers. [spades] 0:00:06.210 396M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:06.503 359M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14312194 kmers in total. [spades] 0:00:06.504 359M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:06.714 359M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:07.083 359M / 6G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:07.423 359M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6644784 bytes occupied (3.71419 bits per kmer). [spades] 0:00:07.446 373M / 6G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 99) Building k-mer extensions from k+1-mers [spades] 0:00:08.020 373M / 6G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 103) Building k-mer extensions from k+1-mers finished. [spades] 0:00:08.024 356M / 6G INFO General (stage.cpp : 113) PROCEDURE == Early tip clipping [spades] 0:00:08.026 356M / 6G INFO General (construction.cpp : 293) Early tip clipper length bound set as (RL - K) [spades] 0:00:08.027 356M / 6G INFO Early tip clipping (early_simplification.hpp : 28) Early tip clipping [spades] 0:00:08.563 365M / 6G INFO Early tip clipping (early_simplification.hpp : 63) #tipped junctions: 74247 [spades] 0:00:08.608 365M / 6G INFO Early tip clipping (early_simplification.hpp : 74) Clipped tips: 74494 [spades] 0:00:08.623 365M / 6G INFO Early tip clipping (early_simplification.hpp : 30) 2649133 42-mers were removed by early tip clipper [spades] 0:00:08.624 365M / 6G INFO General (stage.cpp : 113) PROCEDURE == Condensing graph [spades] 0:00:08.627 365M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 354) Extracting unbranching paths [spades] 0:00:09.171 287M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 373) Extracting unbranching paths finished. 186861 sequences extracted [spades] 0:00:09.477 287M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 309) Collecting perfect loops [spades] 0:00:09.620 287M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 342) Collecting perfect loops finished. 3 loops collected [spades] 0:00:10.377 226M / 6G INFO General (stage.cpp : 113) PROCEDURE == Filling coverage indices (PHM) [spades] 0:00:10.379 226M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:10.379 226M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:10.586 231M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6667272 bytes occupied (3.7182 bits per kmer). [spades] 0:00:10.622 287M / 6G INFO General (construction.cpp : 429) Collecting k-mer coverage information from reads, this takes a while. [spades] 0:00:15.425 281M / 6G INFO General (construction.cpp : 549) Filling coverage and flanking coverage from PHM [spades] 0:00:15.799 281M / 6G INFO General (construction.cpp : 505) Processed 373719 edges [spades] 0:00:15.869 152M / 6G INFO StageManager (stage.cpp : 166) STAGE == EC Threshold Finding [spades] 0:00:15.871 152M / 6G INFO General (kmer_coverage_model.cpp : 181) Kmer coverage valley at: 30 [spades] 0:00:15.872 152M / 6G INFO General (kmer_coverage_model.cpp : 201) K-mer histogram maximum: 32 [spades] 0:00:15.872 152M / 6G INFO General (kmer_coverage_model.cpp : 237) Estimated median coverage: 33. Coverage mad: 2.9652 [spades] 0:00:15.873 152M / 6G INFO General (kmer_coverage_model.cpp : 259) Fitting coverage model [spades] 0:00:15.924 152M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 2 [spades] 0:00:16.051 152M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 4 [spades] 0:00:16.437 152M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 8 [spades] 0:00:17.047 152M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 16 [spades] 0:00:18.169 152M / 6G INFO General (kmer_coverage_model.cpp : 309) Fitted mean coverage: 58.4894. Fitted coverage std. dev: 39.6563 [spades] 0:00:18.169 152M / 6G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 3 [spades] 0:00:18.171 152M / 6G INFO General (kmer_coverage_model.cpp : 334) Probability of erroneous kmer at valley: 1 [spades] 0:00:18.171 152M / 6G INFO General (kmer_coverage_model.cpp : 358) Preliminary threshold calculated as: 57 [spades] 0:00:18.172 152M / 6G INFO General (kmer_coverage_model.cpp : 362) Threshold adjusted to: 30 [spades] 0:00:18.172 152M / 6G INFO General (kmer_coverage_model.cpp : 375) Estimated genome size (ignoring repeats): 3546566 [spades] 0:00:18.173 152M / 6G INFO General (genomic_info_filler.cpp : 53) Mean coverage was calculated as 58.4894 [spades] 0:00:18.174 152M / 6G INFO General (genomic_info_filler.cpp : 68) EC coverage threshold value was calculated as 30 [spades] 0:00:18.174 152M / 6G INFO General (genomic_info_filler.cpp : 69) Trusted kmer low bound: 0 [spades] 0:00:18.175 152M / 6G INFO StageManager (stage.cpp : 166) STAGE == Raw Simplification [spades] 0:00:18.176 152M / 6G INFO General (simplification.cpp : 128) PROCEDURE == InitialCleaning [spades] 0:00:18.176 152M / 6G INFO General (graph_simplification.hpp : 671) Flanking coverage based disconnection disabled [spades] 0:00:18.177 152M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Self conjugate edge remover [spades] 0:00:18.187 152M / 6G INFO Simplification (parallel_processing.hpp : 167) Self conjugate edge remover triggered 1 times [spades] 0:00:18.188 152M / 6G INFO StageManager (stage.cpp : 166) STAGE == Simplification [spades] 0:00:18.188 152M / 6G INFO General (simplification.cpp : 383) Graph simplification started [spades] 0:00:18.189 152M / 6G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:18.190 152M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 1 [spades] 0:00:18.191 152M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.231 148M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1555 times [spades] 0:00:18.232 148M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.259 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 28358 times [spades] 0:00:19.260 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.454 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 8216 times [spades] 0:00:19.455 126M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 2 [spades] 0:00:19.456 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.483 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1014 times [spades] 0:00:19.484 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.507 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 372 times [spades] 0:00:19.507 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.549 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 2164 times [spades] 0:00:19.550 126M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 3 [spades] 0:00:19.551 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.553 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 55 times [spades] 0:00:19.554 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.560 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 76 times [spades] 0:00:19.561 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.575 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 776 times [spades] 0:00:19.576 126M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 4 [spades] 0:00:19.577 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.578 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 5 times [spades] 0:00:19.579 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.581 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 25 times [spades] 0:00:19.582 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.593 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 597 times [spades] 0:00:19.594 126M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 5 [spades] 0:00:19.595 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.596 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:19.596 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.598 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 9 times [spades] 0:00:19.599 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.614 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 768 times [spades] 0:00:19.615 126M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 6 [spades] 0:00:19.617 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.618 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:19.618 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.620 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 5 times [spades] 0:00:19.620 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.637 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 856 times [spades] 0:00:19.637 126M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 7 [spades] 0:00:19.638 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.639 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:19.640 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.641 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 3 times [spades] 0:00:19.641 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.658 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 887 times [spades] 0:00:19.659 126M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 8 [spades] 0:00:19.659 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.660 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 3 times [spades] 0:00:19.661 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.662 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:19.662 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.679 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 868 times [spades] 0:00:19.680 126M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 9 [spades] 0:00:19.680 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.681 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:19.682 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.683 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:19.683 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.701 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 907 times [spades] 0:00:19.701 126M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 10 [spades] 0:00:19.702 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.703 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:19.704 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.704 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 4 times [spades] 0:00:19.705 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.722 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 867 times [spades] 0:00:19.722 126M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 11 [spades] 0:00:19.723 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.730 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 5 times [spades] 0:00:19.731 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.763 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 2 times [spades] 0:00:19.764 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.771 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:19.772 126M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 12 [spades] 0:00:19.773 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.773 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:19.774 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.775 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:19.776 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:19.777 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:19.783 126M / 6G INFO StageManager (stage.cpp : 166) STAGE == Simplification Cleanup [spades] 0:00:19.783 126M / 6G INFO General (simplification.cpp : 196) PROCEDURE == Post simplification [spades] 0:00:19.784 126M / 6G INFO General (graph_simplification.hpp : 456) Disconnection of relatively low covered edges disabled [spades] 0:00:19.785 126M / 6G INFO General (graph_simplification.hpp : 493) Complex tip clipping disabled [spades] 0:00:19.786 126M / 6G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:19.787 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.794 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:19.795 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.824 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:19.825 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:19.832 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:19.833 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:19.862 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:19.863 126M / 6G INFO General (simplification.cpp : 343) Disrupting self-conjugate edges [spades] 0:00:19.904 126M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Removing isolated edges [spades] 0:00:19.962 126M / 6G INFO Simplification (parallel_processing.hpp : 167) Removing isolated edges triggered 18149 times [spades] 0:00:19.963 126M / 6G INFO General (simplification.cpp : 496) Counting average coverage [spades] 0:00:19.978 126M / 6G INFO General (simplification.cpp : 502) Average coverage = 44.4993 [spades] 0:00:19.978 126M / 6G INFO StageManager (stage.cpp : 166) STAGE == Contig Output [spades] 0:00:19.979 126M / 6G INFO General (read_converter.cpp : 102) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K41/simplified_contigs [spades] 0:00:19.985 130M / 6G INFO General (binary_converter.cpp : 96) 16384 reads processed [spades] 0:00:20.012 130M / 6G INFO General (binary_converter.cpp : 111) 28998 reads written [spades] 0:00:20.014 130M / 6G INFO General (pipeline.cpp : 259) SPAdes finished [spades] 0:00:20.065 130M / 6G INFO General (main.cpp : 107) Assembling time: 0 hours 0 minutes 20 seconds [spades] [spades] ===== K41 finished. [spades] [spades] [spades] ===== K51 started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/spades-core /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K51/configs/config.info /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K51/configs/isolate_mode.info [spades] [spades] WARNING: Try to use logger before create one. Level=INFO. Message=Additional contigs is /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K41/simplified_contigs [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K51/configs/config.info [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K51/configs/isolate_mode.info [spades] 0:00:00.001 7M / 9M INFO General (memory_limit.cpp : 49) Memory limit set to 240 Gb [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 85) Starting SPAdes, built from N/A, git revision N/A [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 86) Maximum k-mer length: 128 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 87) Assembling dataset (/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/dataset.info) with K=51 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 88) Maximum # of threads to use (adjusted due to OMP capabilities): 30 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 194) SPAdes started [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 201) Starting from stage: read_conversion [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 207) Two-step RR enabled: 0 [spades] 0:00:00.001 7M / 9M INFO StageManager (stage.cpp : 166) STAGE == Binary Read Conversion [spades] 0:00:00.003 7M / 9M INFO General (read_converter.cpp : 53) Binary reads detected [spades] 0:00:00.005 8M / 9M INFO StageManager (stage.cpp : 166) STAGE == de Bruijn graph construction [spades] 0:00:00.005 8M / 9M INFO General (construction.cpp : 115) Contigs from previous K will be used: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K41/simplified_contigs [spades] 0:00:00.009 9M / 10M INFO General (construction.cpp : 150) Max read length 280 [spades] 0:00:00.009 9M / 10M INFO General (construction.cpp : 153) Max read length without merged 150 [spades] 0:00:00.009 9M / 10M INFO General (construction.cpp : 156) Average read length 178.044 [spades] 0:00:00.009 9M / 10M INFO General (stage.cpp : 113) PROCEDURE == k+1-mer counting [spades] 0:00:00.009 9M / 10M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 900 files using 30 threads. This might take a while. [spades] 0:00:00.010 9M / 10M INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:00.010 9M / 10M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66665 Gb [spades] 0:00:00.011 9M / 10M INFO General (kmer_splitters.hpp : 97) Using cell size of 37282 [spades] 0:00:03.980 21G / 21G INFO General (kmer_splitters.hpp : 287) Processed 4668792 reads [spades] 0:00:04.370 430M / 5G INFO General (kmer_splitters.hpp : 293) Used 4668792 reads [spades] 0:00:04.371 430M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:04.824 430M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14595385 kmers in total. [spades] 0:00:04.827 430M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:05.057 424M / 5G INFO General (stage.cpp : 113) PROCEDURE == Extension index construction [spades] 0:00:05.057 424M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:05.058 424M / 5G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:05.058 424M / 5G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:05.059 424M / 5G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66662 Gb [spades] 0:00:05.059 424M / 5G INFO General (kmer_splitters.hpp : 97) Using cell size of 69905 [spades] 0:00:05.799 18G / 18G INFO General (kmer_splitters.hpp : 364) Processed 14595385 kmers [spades] 0:00:05.800 18G / 18G INFO General (kmer_splitters.hpp : 369) Used 14595385 kmers. [spades] 0:00:05.897 444M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:06.208 420M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14575531 kmers in total. [spades] 0:00:06.209 420M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:06.434 420M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:06.773 398M / 5G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:07.148 398M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6766864 bytes occupied (3.7141 bits per kmer). [spades] 0:00:07.173 412M / 5G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 99) Building k-mer extensions from k+1-mers [spades] 0:00:07.693 412M / 5G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 103) Building k-mer extensions from k+1-mers finished. [spades] 0:00:07.710 388M / 5G INFO General (stage.cpp : 113) PROCEDURE == Early tip clipping [spades] 0:00:07.711 388M / 5G INFO General (construction.cpp : 293) Early tip clipper length bound set as (RL - K) [spades] 0:00:07.712 388M / 5G INFO Early tip clipping (early_simplification.hpp : 28) Early tip clipping [spades] 0:00:08.254 386M / 5G INFO Early tip clipping (early_simplification.hpp : 63) #tipped junctions: 76926 [spades] 0:00:08.315 386M / 5G INFO Early tip clipping (early_simplification.hpp : 74) Clipped tips: 77196 [spades] 0:00:08.325 386M / 5G INFO Early tip clipping (early_simplification.hpp : 30) 2774695 52-mers were removed by early tip clipper [spades] 0:00:08.325 386M / 5G INFO General (stage.cpp : 113) PROCEDURE == Condensing graph [spades] 0:00:08.327 386M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 354) Extracting unbranching paths [spades] 0:00:08.863 291M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 373) Extracting unbranching paths finished. 161219 sequences extracted [spades] 0:00:09.174 291M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 309) Collecting perfect loops [spades] 0:00:09.316 291M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 342) Collecting perfect loops finished. 3 loops collected [spades] 0:00:10.008 247M / 5G INFO General (stage.cpp : 113) PROCEDURE == Filling coverage indices (PHM) [spades] 0:00:10.009 247M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:10.010 247M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:10.232 249M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6783632 bytes occupied (3.71823 bits per kmer). [spades] 0:00:10.268 306M / 5G INFO General (construction.cpp : 429) Collecting k-mer coverage information from reads, this takes a while. [spades] 0:00:14.776 305M / 5G INFO General (construction.cpp : 549) Filling coverage and flanking coverage from PHM [spades] 0:00:15.144 305M / 5G INFO General (construction.cpp : 505) Processed 322439 edges [spades] 0:00:15.214 169M / 5G INFO StageManager (stage.cpp : 166) STAGE == EC Threshold Finding [spades] 0:00:15.216 169M / 5G INFO General (kmer_coverage_model.cpp : 181) Kmer coverage valley at: 27 [spades] 0:00:15.217 169M / 5G INFO General (kmer_coverage_model.cpp : 201) K-mer histogram maximum: 28 [spades] 0:00:15.217 169M / 5G WARN General (kmer_coverage_model.cpp : 218) Too many erroneous kmers, the estimates might be unreliable [spades] 0:00:15.218 169M / 5G INFO General (kmer_coverage_model.cpp : 237) Estimated median coverage: 28. Coverage mad: 17.5424 [spades] 0:00:15.219 169M / 5G INFO General (kmer_coverage_model.cpp : 259) Fitting coverage model [spades] 0:00:15.254 169M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 2 [spades] 0:00:15.355 169M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 4 [spades] 0:00:15.672 169M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 8 [spades] 0:00:16.085 169M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 16 [spades] 0:00:16.937 169M / 5G INFO General (kmer_coverage_model.cpp : 309) Fitted mean coverage: 51.6572. Fitted coverage std. dev: 36.0055 [spades] 0:00:16.938 169M / 5G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 2 [spades] 0:00:16.939 169M / 5G INFO General (kmer_coverage_model.cpp : 334) Probability of erroneous kmer at valley: 1 [spades] 0:00:16.940 169M / 5G INFO General (kmer_coverage_model.cpp : 358) Preliminary threshold calculated as: 43 [spades] 0:00:16.940 169M / 5G INFO General (kmer_coverage_model.cpp : 362) Threshold adjusted to: 26 [spades] 0:00:16.941 169M / 5G INFO General (kmer_coverage_model.cpp : 375) Estimated genome size (ignoring repeats): 3712155 [spades] 0:00:16.941 169M / 5G INFO General (genomic_info_filler.cpp : 53) Mean coverage was calculated as 51.6572 [spades] 0:00:16.942 169M / 5G INFO General (genomic_info_filler.cpp : 68) EC coverage threshold value was calculated as 26 [spades] 0:00:16.943 169M / 5G INFO General (genomic_info_filler.cpp : 69) Trusted kmer low bound: 0 [spades] 0:00:16.943 169M / 5G INFO StageManager (stage.cpp : 166) STAGE == Raw Simplification [spades] 0:00:16.944 169M / 5G INFO General (simplification.cpp : 128) PROCEDURE == InitialCleaning [spades] 0:00:16.945 169M / 5G INFO General (graph_simplification.hpp : 671) Flanking coverage based disconnection disabled [spades] 0:00:16.945 169M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Self conjugate edge remover [spades] 0:00:16.955 169M / 5G INFO Simplification (parallel_processing.hpp : 167) Self conjugate edge remover triggered 0 times [spades] 0:00:16.956 169M / 5G INFO StageManager (stage.cpp : 166) STAGE == Simplification [spades] 0:00:16.957 169M / 5G INFO General (simplification.cpp : 383) Graph simplification started [spades] 0:00:16.958 169M / 5G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:16.959 169M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 1 [spades] 0:00:16.960 169M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:17.002 164M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1873 times [spades] 0:00:17.003 164M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:17.788 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 21104 times [spades] 0:00:17.790 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:17.948 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 6481 times [spades] 0:00:17.950 120M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 2 [spades] 0:00:17.951 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:17.974 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 830 times [spades] 0:00:17.975 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:17.997 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 365 times [spades] 0:00:17.997 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:18.046 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 2467 times [spades] 0:00:18.047 120M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 3 [spades] 0:00:18.047 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.050 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 70 times [spades] 0:00:18.051 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.058 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 85 times [spades] 0:00:18.059 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:18.074 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 769 times [spades] 0:00:18.074 120M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 4 [spades] 0:00:18.075 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.076 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 5 times [spades] 0:00:18.077 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.080 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 41 times [spades] 0:00:18.081 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:18.090 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 473 times [spades] 0:00:18.091 120M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 5 [spades] 0:00:18.092 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.092 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:18.093 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.095 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 10 times [spades] 0:00:18.095 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:18.107 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 622 times [spades] 0:00:18.108 120M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 6 [spades] 0:00:18.109 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.110 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:18.110 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.111 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 7 times [spades] 0:00:18.112 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:18.126 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 705 times [spades] 0:00:18.126 120M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 7 [spades] 0:00:18.127 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.128 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:18.128 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.129 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 5 times [spades] 0:00:18.130 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:18.144 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 715 times [spades] 0:00:18.144 120M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 8 [spades] 0:00:18.145 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.146 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:18.147 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.147 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:18.148 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:18.163 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 742 times [spades] 0:00:18.163 120M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 9 [spades] 0:00:18.164 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.165 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:18.166 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.166 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:18.167 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:18.181 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 729 times [spades] 0:00:18.182 120M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 10 [spades] 0:00:18.183 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.183 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:18.184 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.185 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:18.185 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:18.201 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 768 times [spades] 0:00:18.201 120M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 11 [spades] 0:00:18.202 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.209 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:18.210 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.242 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 2 times [spades] 0:00:18.244 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:18.251 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:18.252 120M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 12 [spades] 0:00:18.253 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.254 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:18.255 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.256 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:18.257 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:18.258 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:18.264 120M / 5G INFO StageManager (stage.cpp : 166) STAGE == Simplification Cleanup [spades] 0:00:18.265 120M / 5G INFO General (simplification.cpp : 196) PROCEDURE == Post simplification [spades] 0:00:18.266 120M / 5G INFO General (graph_simplification.hpp : 456) Disconnection of relatively low covered edges disabled [spades] 0:00:18.267 120M / 5G INFO General (graph_simplification.hpp : 493) Complex tip clipping disabled [spades] 0:00:18.268 120M / 5G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:18.269 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.276 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:18.278 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.307 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:18.309 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:18.316 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:18.318 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:18.347 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:18.348 120M / 5G INFO General (simplification.cpp : 343) Disrupting self-conjugate edges [spades] 0:00:18.390 120M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Removing isolated edges [spades] 0:00:18.453 120M / 5G INFO Simplification (parallel_processing.hpp : 167) Removing isolated edges triggered 21042 times [spades] 0:00:18.454 120M / 5G INFO General (simplification.cpp : 496) Counting average coverage [spades] 0:00:18.468 120M / 5G INFO General (simplification.cpp : 502) Average coverage = 40.1206 [spades] 0:00:18.469 120M / 5G INFO StageManager (stage.cpp : 166) STAGE == Contig Output [spades] 0:00:18.470 120M / 5G INFO General (read_converter.cpp : 102) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K51/simplified_contigs [spades] 0:00:18.476 124M / 5G INFO General (binary_converter.cpp : 96) 16384 reads processed [spades] 0:00:18.498 124M / 5G INFO General (binary_converter.cpp : 111) 27907 reads written [spades] 0:00:18.501 124M / 5G INFO General (pipeline.cpp : 259) SPAdes finished [spades] 0:00:18.561 122M / 5G INFO General (main.cpp : 107) Assembling time: 0 hours 0 minutes 18 seconds [spades] [spades] ===== K51 finished. [spades] [spades] [spades] ===== K61 started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/spades-core /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K61/configs/config.info /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K61/configs/isolate_mode.info [spades] [spades] WARNING: Try to use logger before create one. Level=INFO. Message=Additional contigs is /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K51/simplified_contigs [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K61/configs/config.info [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K61/configs/isolate_mode.info [spades] 0:00:00.000 7M / 9M INFO General (memory_limit.cpp : 49) Memory limit set to 240 Gb [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 85) Starting SPAdes, built from N/A, git revision N/A [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 86) Maximum k-mer length: 128 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 87) Assembling dataset (/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/dataset.info) with K=61 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 88) Maximum # of threads to use (adjusted due to OMP capabilities): 30 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 194) SPAdes started [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 201) Starting from stage: read_conversion [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 207) Two-step RR enabled: 0 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 218) Will need read mapping, kmer mapper will be attached [spades] 0:00:00.001 7M / 9M INFO StageManager (stage.cpp : 166) STAGE == Binary Read Conversion [spades] 0:00:00.002 7M / 9M INFO General (read_converter.cpp : 53) Binary reads detected [spades] 0:00:00.004 8M / 9M INFO StageManager (stage.cpp : 166) STAGE == de Bruijn graph construction [spades] 0:00:00.004 8M / 9M INFO General (construction.cpp : 115) Contigs from previous K will be used: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K51/simplified_contigs [spades] 0:00:00.007 8M / 10M INFO General (construction.cpp : 150) Max read length 280 [spades] 0:00:00.007 8M / 10M INFO General (construction.cpp : 153) Max read length without merged 150 [spades] 0:00:00.008 8M / 10M INFO General (construction.cpp : 156) Average read length 178.044 [spades] 0:00:00.008 8M / 10M INFO General (stage.cpp : 113) PROCEDURE == k+1-mer counting [spades] 0:00:00.008 8M / 10M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 900 files using 30 threads. This might take a while. [spades] 0:00:00.009 9M / 10M INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:00.009 9M / 10M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66665 Gb [spades] 0:00:00.009 9M / 10M INFO General (kmer_splitters.hpp : 97) Using cell size of 37282 [spades] 0:00:03.736 21G / 21G INFO General (kmer_splitters.hpp : 287) Processed 4666610 reads [spades] 0:00:04.111 374M / 5G INFO General (kmer_splitters.hpp : 293) Used 4666610 reads [spades] 0:00:04.111 374M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:04.582 370M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14728845 kmers in total. [spades] 0:00:04.585 370M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:04.825 370M / 5G INFO General (stage.cpp : 113) PROCEDURE == Extension index construction [spades] 0:00:04.826 370M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:04.826 370M / 5G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:04.827 370M / 5G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:04.827 370M / 5G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66662 Gb [spades] 0:00:04.828 370M / 5G INFO General (kmer_splitters.hpp : 97) Using cell size of 69905 [spades] 0:00:05.593 18G / 18G INFO General (kmer_splitters.hpp : 364) Processed 14728845 kmers [spades] 0:00:05.594 18G / 18G INFO General (kmer_splitters.hpp : 369) Used 14728845 kmers. [spades] 0:00:05.679 392M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:05.961 362M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14719976 kmers in total. [spades] 0:00:05.963 362M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:06.180 362M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:06.561 337M / 5G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:06.968 337M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6833864 bytes occupied (3.71406 bits per kmer). [spades] 0:00:06.998 353M / 5G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 99) Building k-mer extensions from k+1-mers [spades] 0:00:07.476 353M / 5G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 103) Building k-mer extensions from k+1-mers finished. [spades] 0:00:07.484 327M / 5G INFO General (stage.cpp : 113) PROCEDURE == Condensing graph [spades] 0:00:07.487 327M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 354) Extracting unbranching paths [spades] 0:00:08.115 308M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 373) Extracting unbranching paths finished. 297631 sequences extracted [spades] 0:00:08.499 298M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 309) Collecting perfect loops [spades] 0:00:08.642 298M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 342) Collecting perfect loops finished. 1 loops collected [spades] 0:00:09.892 259M / 5G INFO General (stage.cpp : 113) PROCEDURE == Filling coverage indices (PHM) [spades] 0:00:09.893 259M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:09.894 259M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:10.104 260M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6845280 bytes occupied (3.71803 bits per kmer). [spades] 0:00:10.141 324M / 5G INFO General (construction.cpp : 429) Collecting k-mer coverage information from reads, this takes a while. [spades] 0:00:14.372 324M / 5G INFO General (construction.cpp : 549) Filling coverage and flanking coverage from PHM [spades] 0:00:14.835 324M / 5G INFO General (construction.cpp : 505) Processed 595261 edges [spades] 0:00:14.907 183M / 5G INFO StageManager (stage.cpp : 166) STAGE == EC Threshold Finding [spades] 0:00:14.908 183M / 5G INFO General (kmer_coverage_model.cpp : 181) Kmer coverage valley at: 114 [spades] 0:00:14.909 183M / 5G INFO General (kmer_coverage_model.cpp : 201) K-mer histogram maximum: 116 [spades] 0:00:14.910 183M / 5G INFO General (kmer_coverage_model.cpp : 237) Estimated median coverage: 117. Coverage mad: 2.9652 [spades] 0:00:14.910 183M / 5G INFO General (kmer_coverage_model.cpp : 259) Fitting coverage model [spades] 0:00:15.013 183M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 2 [spades] 0:00:15.261 183M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 4 [spades] 0:00:15.919 183M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 8 [spades] 0:00:17.542 183M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 16 [spades] 0:00:19.213 183M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 32 [spades] 0:00:20.421 183M / 5G INFO General (kmer_coverage_model.cpp : 309) Fitted mean coverage: 50.0856. Fitted coverage std. dev: 30.7756 [spades] 0:00:20.421 183M / 5G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 25 [spades] 0:00:20.424 183M / 5G INFO General (kmer_coverage_model.cpp : 334) Probability of erroneous kmer at valley: 0.295957 [spades] 0:00:20.425 183M / 5G WARN General (kmer_coverage_model.cpp : 366) Failed to determine erroneous kmer threshold. Threshold set to: 25 [spades] 0:00:20.426 183M / 5G INFO General (kmer_coverage_model.cpp : 375) Estimated genome size (ignoring repeats): 3667404 [spades] 0:00:20.426 183M / 5G INFO General (genomic_info_filler.cpp : 55) Failed to estimate mean coverage [spades] 0:00:20.427 183M / 5G INFO General (genomic_info_filler.cpp : 68) EC coverage threshold value was calculated as 25 [spades] 0:00:20.427 183M / 5G INFO General (genomic_info_filler.cpp : 69) Trusted kmer low bound: 0 [spades] 0:00:20.428 183M / 5G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:20.429 183M / 5G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:20.429 183M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:20.430 183M / 5G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:20.431 181M / 5G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:20.432 181M / 5G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66569 Gb [spades] 0:00:20.433 181M / 5G INFO General (kmer_splitters.hpp : 97) Using cell size of 69905 [spades] 0:00:20.820 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 595261 edges [spades] 0:00:20.823 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 595261 sequences. [spades] 0:00:20.892 215M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:21.188 213M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14728845 kmers in total. [spades] 0:00:21.191 213M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:21.406 213M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:21.756 213M / 5G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:22.128 213M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6837968 bytes occupied (3.71406 bits per kmer). [spades] 0:00:22.271 469M / 5G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:22.551 469M / 5G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:22.554 469M / 5G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:22.916 481M / 5G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:23.482 464M / 5G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:23.483 464M / 5G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:23.545 465M / 5G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:23.851 462M / 5G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 364 gaps after checking 3093 candidates [spades] 0:00:23.962 462M / 5G INFO StageManager (stage.cpp : 166) STAGE == Raw Simplification [spades] 0:00:23.972 206M / 5G INFO General (simplification.cpp : 128) PROCEDURE == InitialCleaning [spades] 0:00:23.973 206M / 5G INFO General (graph_simplification.hpp : 671) Flanking coverage based disconnection disabled [spades] 0:00:23.974 206M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Self conjugate edge remover [spades] 0:00:23.991 206M / 5G INFO Simplification (parallel_processing.hpp : 167) Self conjugate edge remover triggered 2 times [spades] 0:00:23.992 206M / 5G INFO StageManager (stage.cpp : 166) STAGE == Simplification [spades] 0:00:23.993 206M / 5G INFO General (simplification.cpp : 383) Graph simplification started [spades] 0:00:23.994 206M / 5G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:23.995 206M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 1 [spades] 0:00:23.996 206M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.832 203M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 81224 times [spades] 0:00:24.833 203M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.050 284M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 15887 times [spades] 0:00:28.053 284M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.199 283M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 5532 times [spades] 0:00:28.201 283M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 2 [spades] 0:00:28.201 283M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.221 283M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 667 times [spades] 0:00:28.222 283M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.327 285M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 320 times [spades] 0:00:28.328 285M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.377 285M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 2307 times [spades] 0:00:28.378 285M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 3 [spades] 0:00:28.379 285M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.381 285M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 54 times [spades] 0:00:28.382 285M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.419 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 98 times [spades] 0:00:28.420 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.434 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 652 times [spades] 0:00:28.435 286M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 4 [spades] 0:00:28.435 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.436 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 5 times [spades] 0:00:28.437 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.452 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 41 times [spades] 0:00:28.452 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.462 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 459 times [spades] 0:00:28.463 286M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 5 [spades] 0:00:28.463 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.464 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.465 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.470 287M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 11 times [spades] 0:00:28.470 287M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.483 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 600 times [spades] 0:00:28.484 286M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 6 [spades] 0:00:28.485 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.485 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 3 times [spades] 0:00:28.486 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.490 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 7 times [spades] 0:00:28.490 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.519 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 660 times [spades] 0:00:28.521 286M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 7 [spades] 0:00:28.521 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.522 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.523 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.525 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 3 times [spades] 0:00:28.526 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.547 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 717 times [spades] 0:00:28.548 286M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 8 [spades] 0:00:28.548 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.549 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.550 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.551 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.552 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.570 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 711 times [spades] 0:00:28.571 286M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 9 [spades] 0:00:28.571 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.572 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.573 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.574 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.574 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.591 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 692 times [spades] 0:00:28.591 286M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 10 [spades] 0:00:28.592 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.593 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.593 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.594 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:28.595 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.611 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 687 times [spades] 0:00:28.612 286M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 11 [spades] 0:00:28.612 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.623 286M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 3 times [spades] 0:00:28.623 286M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.652 287M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:28.653 287M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.661 287M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:28.662 287M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 12 [spades] 0:00:28.663 287M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.664 287M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.665 287M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.665 287M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.666 287M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.667 287M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:28.676 287M / 5G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:28.676 287M / 5G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:28.677 287M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:28.678 287M / 5G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:28.679 287M / 5G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:28.681 287M / 5G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66431 Gb [spades] 0:00:28.681 287M / 5G INFO General (kmer_splitters.hpp : 97) Using cell size of 69905 [spades] 0:00:28.942 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 97560 edges [spades] 0:00:28.944 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 97560 sequences. [spades] 0:00:29.004 317M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:29.253 317M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 9382430 kmers in total. [spades] 0:00:29.254 317M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:29.399 317M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:29.624 317M / 5G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:29.860 317M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 4358824 bytes occupied (3.71658 bits per kmer). [spades] 0:00:29.992 477M / 5G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:30.165 477M / 5G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:30.167 477M / 5G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:30.257 480M / 5G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:31.406 474M / 5G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:31.408 474M / 5G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:31.474 467M / 5G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:31.553 467M / 5G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 132 gaps after checking 1931 candidates [spades] 0:00:31.694 467M / 5G INFO StageManager (stage.cpp : 166) STAGE == Simplification Cleanup [spades] 0:00:31.695 467M / 5G INFO General (simplification.cpp : 196) PROCEDURE == Post simplification [spades] 0:00:31.695 467M / 5G INFO General (graph_simplification.hpp : 456) Disconnection of relatively low covered edges disabled [spades] 0:00:31.696 467M / 5G INFO General (graph_simplification.hpp : 493) Complex tip clipping disabled [spades] 0:00:31.697 467M / 5G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:31.697 467M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:31.705 467M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:31.706 467M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:31.735 467M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:31.736 467M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:31.745 467M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:31.746 467M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:31.774 467M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:31.775 467M / 5G INFO General (simplification.cpp : 343) Disrupting self-conjugate edges [spades] 0:00:31.824 467M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Removing isolated edges [spades] 0:00:33.195 457M / 5G INFO Simplification (parallel_processing.hpp : 167) Removing isolated edges triggered 23809 times [spades] 0:00:33.196 457M / 5G INFO General (simplification.cpp : 496) Counting average coverage [spades] 0:00:33.211 457M / 5G INFO General (simplification.cpp : 502) Average coverage = 36.109 [spades] 0:00:33.212 457M / 5G INFO StageManager (stage.cpp : 166) STAGE == Contig Output [spades] 0:00:33.221 457M / 5G INFO General (read_converter.cpp : 102) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K61/simplified_contigs [spades] 0:00:33.237 461M / 5G INFO General (binary_converter.cpp : 96) 16384 reads processed [spades] 0:00:33.265 461M / 5G INFO General (binary_converter.cpp : 111) 24839 reads written [spades] 0:00:33.269 461M / 5G INFO General (pipeline.cpp : 259) SPAdes finished [spades] 0:00:33.622 274M / 5G INFO General (main.cpp : 107) Assembling time: 0 hours 0 minutes 33 seconds [spades] [spades] ===== K61 finished. [spades] [spades] [spades] ===== K71 started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/spades-core /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K71/configs/config.info /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K71/configs/isolate_mode.info [spades] [spades] WARNING: Try to use logger before create one. Level=INFO. Message=Additional contigs is /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K61/simplified_contigs [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K71/configs/config.info [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K71/configs/isolate_mode.info [spades] 0:00:00.001 7M / 9M INFO General (memory_limit.cpp : 49) Memory limit set to 240 Gb [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 85) Starting SPAdes, built from N/A, git revision N/A [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 86) Maximum k-mer length: 128 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 87) Assembling dataset (/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/dataset.info) with K=71 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 88) Maximum # of threads to use (adjusted due to OMP capabilities): 30 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 194) SPAdes started [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 201) Starting from stage: read_conversion [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 207) Two-step RR enabled: 0 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 218) Will need read mapping, kmer mapper will be attached [spades] 0:00:00.001 7M / 9M INFO StageManager (stage.cpp : 166) STAGE == Binary Read Conversion [spades] 0:00:00.003 7M / 9M INFO General (read_converter.cpp : 53) Binary reads detected [spades] 0:00:00.005 8M / 9M INFO StageManager (stage.cpp : 166) STAGE == de Bruijn graph construction [spades] 0:00:00.005 8M / 9M INFO General (construction.cpp : 115) Contigs from previous K will be used: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K61/simplified_contigs [spades] 0:00:00.008 8M / 10M INFO General (construction.cpp : 150) Max read length 280 [spades] 0:00:00.008 8M / 10M INFO General (construction.cpp : 153) Max read length without merged 150 [spades] 0:00:00.009 8M / 10M INFO General (construction.cpp : 156) Average read length 178.044 [spades] 0:00:00.009 8M / 10M INFO General (stage.cpp : 113) PROCEDURE == k+1-mer counting [spades] 0:00:00.009 8M / 10M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 900 files using 30 threads. This might take a while. [spades] 0:00:00.010 9M / 10M INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:00.010 9M / 10M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66665 Gb [spades] 0:00:00.010 9M / 10M INFO General (kmer_splitters.hpp : 97) Using cell size of 24855 [spades] 0:00:03.765 21G / 21G INFO General (kmer_splitters.hpp : 287) Processed 4660474 reads [spades] 0:00:04.246 427M / 7G INFO General (kmer_splitters.hpp : 293) Used 4660474 reads [spades] 0:00:04.247 427M / 7G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:04.767 429M / 7G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14774109 kmers in total. [spades] 0:00:04.768 429M / 7G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:05.118 424M / 7G INFO General (stage.cpp : 113) PROCEDURE == Extension index construction [spades] 0:00:05.119 424M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:05.120 424M / 7G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:05.120 424M / 7G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:05.121 424M / 7G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66662 Gb [spades] 0:00:05.121 424M / 7G INFO General (kmer_splitters.hpp : 97) Using cell size of 46603 [spades] 0:00:05.999 18G / 18G INFO General (kmer_splitters.hpp : 364) Processed 14774109 kmers [spades] 0:00:06.000 18G / 18G INFO General (kmer_splitters.hpp : 369) Used 14774109 kmers. [spades] 0:00:06.111 447M / 7G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:06.441 447M / 7G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14775093 kmers in total. [spades] 0:00:06.447 447M / 7G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:06.777 447M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:07.135 450M / 7G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:07.659 450M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6859424 bytes occupied (3.71405 bits per kmer). [spades] 0:00:07.685 466M / 7G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 99) Building k-mer extensions from k+1-mers [spades] 0:00:08.218 466M / 7G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 103) Building k-mer extensions from k+1-mers finished. [spades] 0:00:08.226 433M / 7G INFO General (stage.cpp : 113) PROCEDURE == Condensing graph [spades] 0:00:08.231 433M / 7G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 354) Extracting unbranching paths [spades] 0:00:08.899 305M / 7G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 373) Extracting unbranching paths finished. 283736 sequences extracted [spades] 0:00:09.315 305M / 7G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 309) Collecting perfect loops [spades] 0:00:09.466 305M / 7G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 342) Collecting perfect loops finished. 0 loops collected [spades] 0:00:10.701 246M / 7G INFO General (stage.cpp : 113) PROCEDURE == Filling coverage indices (PHM) [spades] 0:00:10.702 246M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:10.703 246M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:10.949 241M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6866504 bytes occupied (3.71813 bits per kmer). [spades] 0:00:10.996 305M / 7G INFO General (construction.cpp : 429) Collecting k-mer coverage information from reads, this takes a while. [spades] 0:00:14.954 305M / 7G INFO General (construction.cpp : 549) Filling coverage and flanking coverage from PHM [spades] 0:00:15.441 305M / 7G INFO General (construction.cpp : 505) Processed 567471 edges [spades] 0:00:15.526 182M / 7G INFO StageManager (stage.cpp : 166) STAGE == EC Threshold Finding [spades] 0:00:15.527 182M / 7G INFO General (kmer_coverage_model.cpp : 181) Kmer coverage valley at: 104 [spades] 0:00:15.528 182M / 7G INFO General (kmer_coverage_model.cpp : 201) K-mer histogram maximum: 105 [spades] 0:00:15.529 182M / 7G WARN General (kmer_coverage_model.cpp : 218) Too many erroneous kmers, the estimates might be unreliable [spades] 0:00:15.530 182M / 7G INFO General (kmer_coverage_model.cpp : 237) Estimated median coverage: 105. Coverage mad: 33.9706 [spades] 0:00:15.530 182M / 7G INFO General (kmer_coverage_model.cpp : 259) Fitting coverage model [spades] 0:00:15.595 182M / 7G INFO General (kmer_coverage_model.cpp : 295) ... iteration 2 [spades] 0:00:15.730 182M / 7G INFO General (kmer_coverage_model.cpp : 295) ... iteration 4 [spades] 0:00:16.187 182M / 7G INFO General (kmer_coverage_model.cpp : 295) ... iteration 8 [spades] 0:00:17.572 182M / 7G INFO General (kmer_coverage_model.cpp : 295) ... iteration 16 [spades] 0:00:19.350 182M / 7G INFO General (kmer_coverage_model.cpp : 295) ... iteration 32 [spades] 0:00:20.042 182M / 7G INFO General (kmer_coverage_model.cpp : 309) Fitted mean coverage: 42.3655. Fitted coverage std. dev: 28.9856 [spades] 0:00:20.043 182M / 7G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 2 [spades] 0:00:20.045 182M / 7G INFO General (kmer_coverage_model.cpp : 334) Probability of erroneous kmer at valley: 1 [spades] 0:00:20.046 182M / 7G INFO General (kmer_coverage_model.cpp : 358) Preliminary threshold calculated as: 35 [spades] 0:00:20.047 182M / 7G INFO General (kmer_coverage_model.cpp : 362) Threshold adjusted to: 22 [spades] 0:00:20.047 182M / 7G INFO General (kmer_coverage_model.cpp : 375) Estimated genome size (ignoring repeats): 3777813 [spades] 0:00:20.048 182M / 7G INFO General (genomic_info_filler.cpp : 53) Mean coverage was calculated as 42.3655 [spades] 0:00:20.048 182M / 7G INFO General (genomic_info_filler.cpp : 68) EC coverage threshold value was calculated as 22 [spades] 0:00:20.049 182M / 7G INFO General (genomic_info_filler.cpp : 69) Trusted kmer low bound: 0 [spades] 0:00:20.050 182M / 7G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:20.050 182M / 7G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:20.051 182M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:20.052 182M / 7G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:20.053 180M / 7G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:20.054 180M / 7G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66571 Gb [spades] 0:00:20.055 180M / 7G INFO General (kmer_splitters.hpp : 97) Using cell size of 46603 [spades] 0:00:20.553 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 567471 edges [spades] 0:00:20.555 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 567471 sequences. [spades] 0:00:20.628 253M / 7G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:20.946 244M / 7G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14774109 kmers in total. [spades] 0:00:20.948 244M / 7G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:21.287 244M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:21.710 243M / 7G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:22.254 243M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6859008 bytes occupied (3.71407 bits per kmer). [spades] 0:00:22.397 499M / 7G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:22.703 492M / 7G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:22.705 492M / 7G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:23.066 504M / 7G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:23.600 481M / 7G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:23.601 481M / 7G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:23.667 482M / 7G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:23.960 482M / 7G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 139 gaps after checking 2793 candidates [spades] 0:00:24.025 481M / 7G INFO StageManager (stage.cpp : 166) STAGE == Raw Simplification [spades] 0:00:24.036 225M / 7G INFO General (simplification.cpp : 128) PROCEDURE == InitialCleaning [spades] 0:00:24.037 225M / 7G INFO General (graph_simplification.hpp : 671) Flanking coverage based disconnection disabled [spades] 0:00:24.038 225M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Self conjugate edge remover [spades] 0:00:24.055 225M / 7G INFO Simplification (parallel_processing.hpp : 167) Self conjugate edge remover triggered 0 times [spades] 0:00:24.056 225M / 7G INFO StageManager (stage.cpp : 166) STAGE == Simplification [spades] 0:00:24.057 225M / 7G INFO General (simplification.cpp : 383) Graph simplification started [spades] 0:00:24.058 225M / 7G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:24.059 225M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 1 [spades] 0:00:24.059 225M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.941 208M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 82287 times [spades] 0:00:24.942 208M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:27.816 313M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 11805 times [spades] 0:00:27.817 313M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:27.938 312M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 4264 times [spades] 0:00:27.939 312M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 2 [spades] 0:00:27.940 312M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:27.958 312M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 524 times [spades] 0:00:27.959 312M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.073 317M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 283 times [spades] 0:00:28.074 317M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.120 317M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 2060 times [spades] 0:00:28.120 317M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 3 [spades] 0:00:28.121 317M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.124 317M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 48 times [spades] 0:00:28.124 317M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.163 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 87 times [spades] 0:00:28.164 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.180 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 697 times [spades] 0:00:28.181 319M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 4 [spades] 0:00:28.181 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.182 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 6 times [spades] 0:00:28.183 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.204 320M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 51 times [spades] 0:00:28.204 320M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.214 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 421 times [spades] 0:00:28.215 319M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 5 [spades] 0:00:28.216 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.216 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:28.217 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.221 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 7 times [spades] 0:00:28.221 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.233 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 534 times [spades] 0:00:28.234 319M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 6 [spades] 0:00:28.234 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.235 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:28.236 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.239 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 8 times [spades] 0:00:28.240 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.252 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 567 times [spades] 0:00:28.253 319M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 7 [spades] 0:00:28.253 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.254 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:28.255 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.256 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:28.257 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.270 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 613 times [spades] 0:00:28.271 319M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 8 [spades] 0:00:28.271 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.272 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.273 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.274 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:28.274 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.288 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 656 times [spades] 0:00:28.289 319M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 9 [spades] 0:00:28.290 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.291 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.291 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.292 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.293 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.306 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 625 times [spades] 0:00:28.307 319M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 10 [spades] 0:00:28.308 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.309 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.309 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.310 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 2 times [spades] 0:00:28.311 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.324 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 605 times [spades] 0:00:28.325 319M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 11 [spades] 0:00:28.326 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.335 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 3 times [spades] 0:00:28.336 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.367 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:28.368 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.378 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:28.379 319M / 7G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 12 [spades] 0:00:28.380 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.381 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.382 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.382 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.383 319M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.384 319M / 7G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:28.393 319M / 7G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:28.394 319M / 7G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:28.395 319M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:28.396 319M / 7G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:28.398 319M / 7G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:28.399 319M / 7G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66399 Gb [spades] 0:00:28.400 319M / 7G INFO General (kmer_splitters.hpp : 97) Using cell size of 46603 [spades] 0:00:28.736 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 102614 edges [spades] 0:00:28.737 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 102614 sequences. [spades] 0:00:28.800 357M / 7G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:29.068 357M / 7G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 9531959 kmers in total. [spades] 0:00:29.070 357M / 7G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:29.293 357M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:29.535 360M / 7G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:29.903 360M / 7G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 4428200 bytes occupied (3.71651 bits per kmer). [spades] 0:00:30.052 520M / 7G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:30.230 520M / 7G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:30.232 520M / 7G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:30.348 523M / 7G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:31.449 514M / 7G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:31.451 514M / 7G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:31.516 514M / 7G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:31.601 508M / 7G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 16 gaps after checking 1708 candidates [spades] 0:00:31.641 508M / 7G INFO StageManager (stage.cpp : 166) STAGE == Simplification Cleanup [spades] 0:00:31.642 508M / 7G INFO General (simplification.cpp : 196) PROCEDURE == Post simplification [spades] 0:00:31.643 508M / 7G INFO General (graph_simplification.hpp : 456) Disconnection of relatively low covered edges disabled [spades] 0:00:31.644 508M / 7G INFO General (graph_simplification.hpp : 493) Complex tip clipping disabled [spades] 0:00:31.645 508M / 7G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:31.645 508M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:31.654 508M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:31.656 508M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:31.685 508M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:31.686 508M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:31.695 508M / 7G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:31.696 508M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:31.724 508M / 7G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:31.726 508M / 7G INFO General (simplification.cpp : 343) Disrupting self-conjugate edges [spades] 0:00:31.780 508M / 7G INFO Simplification (parallel_processing.hpp : 165) Running Removing isolated edges [spades] 0:00:33.424 497M / 7G INFO Simplification (parallel_processing.hpp : 167) Removing isolated edges triggered 27538 times [spades] 0:00:33.426 497M / 7G INFO General (simplification.cpp : 496) Counting average coverage [spades] 0:00:33.443 497M / 7G INFO General (simplification.cpp : 502) Average coverage = 32.5897 [spades] 0:00:33.444 497M / 7G INFO StageManager (stage.cpp : 166) STAGE == Contig Output [spades] 0:00:33.448 497M / 7G INFO General (read_converter.cpp : 102) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K71/simplified_contigs [spades] 0:00:33.458 497M / 7G INFO General (binary_converter.cpp : 96) 16384 reads processed [spades] 0:00:33.485 497M / 7G INFO General (binary_converter.cpp : 111) 23753 reads written [spades] 0:00:33.489 498M / 7G INFO General (pipeline.cpp : 259) SPAdes finished [spades] 0:00:33.853 308M / 7G INFO General (main.cpp : 107) Assembling time: 0 hours 0 minutes 33 seconds [spades] [spades] ===== K71 finished. [spades] [spades] [spades] ===== K81 started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/spades-core /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K81/configs/config.info /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K81/configs/isolate_mode.info [spades] [spades] WARNING: Try to use logger before create one. Level=INFO. Message=Additional contigs is /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K71/simplified_contigs [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K81/configs/config.info [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K81/configs/isolate_mode.info [spades] 0:00:00.000 7M / 9M INFO General (memory_limit.cpp : 49) Memory limit set to 240 Gb [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 85) Starting SPAdes, built from N/A, git revision N/A [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 86) Maximum k-mer length: 128 [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 87) Assembling dataset (/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/dataset.info) with K=81 [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 88) Maximum # of threads to use (adjusted due to OMP capabilities): 30 [spades] 0:00:00.000 7M / 9M INFO General (pipeline.cpp : 194) SPAdes started [spades] 0:00:00.000 7M / 9M INFO General (pipeline.cpp : 201) Starting from stage: read_conversion [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 207) Two-step RR enabled: 0 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 218) Will need read mapping, kmer mapper will be attached [spades] 0:00:00.001 7M / 9M INFO StageManager (stage.cpp : 166) STAGE == Binary Read Conversion [spades] 0:00:00.002 7M / 9M INFO General (read_converter.cpp : 53) Binary reads detected [spades] 0:00:00.004 8M / 9M INFO StageManager (stage.cpp : 166) STAGE == de Bruijn graph construction [spades] 0:00:00.004 8M / 9M INFO General (construction.cpp : 115) Contigs from previous K will be used: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K71/simplified_contigs [spades] 0:00:00.007 8M / 9M INFO General (construction.cpp : 150) Max read length 280 [spades] 0:00:00.007 8M / 9M INFO General (construction.cpp : 153) Max read length without merged 150 [spades] 0:00:00.007 8M / 9M INFO General (construction.cpp : 156) Average read length 178.044 [spades] 0:00:00.007 8M / 9M INFO General (stage.cpp : 113) PROCEDURE == k+1-mer counting [spades] 0:00:00.008 8M / 9M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 900 files using 30 threads. This might take a while. [spades] 0:00:00.008 8M / 10M INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:00.009 8M / 10M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66665 Gb [spades] 0:00:00.009 8M / 10M INFO General (kmer_splitters.hpp : 97) Using cell size of 24855 [spades] 0:00:03.515 21G / 21G INFO General (kmer_splitters.hpp : 287) Processed 4658302 reads [spades] 0:00:03.948 582M / 6G INFO General (kmer_splitters.hpp : 293) Used 4658302 reads [spades] 0:00:03.949 582M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:04.482 584M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14702542 kmers in total. [spades] 0:00:04.484 584M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:04.845 578M / 6G INFO General (stage.cpp : 113) PROCEDURE == Extension index construction [spades] 0:00:04.845 578M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:04.846 578M / 6G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:04.846 578M / 6G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:04.847 578M / 6G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66662 Gb [spades] 0:00:04.847 578M / 6G INFO General (kmer_splitters.hpp : 97) Using cell size of 46603 [spades] 0:00:05.737 19G / 19G INFO General (kmer_splitters.hpp : 364) Processed 14702542 kmers [spades] 0:00:05.738 19G / 19G INFO General (kmer_splitters.hpp : 369) Used 14702542 kmers. [spades] 0:00:05.850 589M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:06.172 589M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14713653 kmers in total. [spades] 0:00:06.174 589M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:06.508 589M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:06.881 586M / 6G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:07.442 586M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6830848 bytes occupied (3.71402 bits per kmer). [spades] 0:00:07.464 602M / 6G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 99) Building k-mer extensions from k+1-mers [spades] 0:00:07.955 602M / 6G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 103) Building k-mer extensions from k+1-mers finished. [spades] 0:00:07.962 571M / 6G INFO General (stage.cpp : 113) PROCEDURE == Condensing graph [spades] 0:00:07.966 571M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 354) Extracting unbranching paths [spades] 0:00:08.624 421M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 373) Extracting unbranching paths finished. 271901 sequences extracted [spades] 0:00:09.038 421M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 309) Collecting perfect loops [spades] 0:00:09.189 421M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 342) Collecting perfect loops finished. 0 loops collected [spades] 0:00:10.409 336M / 6G INFO General (stage.cpp : 113) PROCEDURE == Filling coverage indices (PHM) [spades] 0:00:10.410 336M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:10.411 336M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:10.654 330M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6833048 bytes occupied (3.71802 bits per kmer). [spades] 0:00:10.690 394M / 6G INFO General (construction.cpp : 429) Collecting k-mer coverage information from reads, this takes a while. [spades] 0:00:14.300 394M / 6G INFO General (construction.cpp : 549) Filling coverage and flanking coverage from PHM [spades] 0:00:14.785 394M / 6G INFO General (construction.cpp : 505) Processed 543802 edges [spades] 0:00:14.871 277M / 6G INFO StageManager (stage.cpp : 166) STAGE == EC Threshold Finding [spades] 0:00:14.873 277M / 6G INFO General (kmer_coverage_model.cpp : 181) Kmer coverage valley at: 91 [spades] 0:00:14.874 277M / 6G INFO General (kmer_coverage_model.cpp : 201) K-mer histogram maximum: 93 [spades] 0:00:14.875 277M / 6G INFO General (kmer_coverage_model.cpp : 237) Estimated median coverage: 94. Coverage mad: 2.9652 [spades] 0:00:14.875 277M / 6G INFO General (kmer_coverage_model.cpp : 259) Fitting coverage model [spades] 0:00:14.965 277M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 2 [spades] 0:00:15.183 277M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 4 [spades] 0:00:15.779 277M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 8 [spades] 0:00:17.195 277M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 16 [spades] 0:00:18.952 277M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 32 [spades] 0:00:20.429 277M / 6G INFO General (kmer_coverage_model.cpp : 309) Fitted mean coverage: 40.7131. Fitted coverage std. dev: 25.4706 [spades] 0:00:20.430 277M / 6G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 3 [spades] 0:00:20.432 277M / 6G INFO General (kmer_coverage_model.cpp : 334) Probability of erroneous kmer at valley: 1 [spades] 0:00:20.433 277M / 6G INFO General (kmer_coverage_model.cpp : 358) Preliminary threshold calculated as: 47 [spades] 0:00:20.433 277M / 6G INFO General (kmer_coverage_model.cpp : 362) Threshold adjusted to: 21 [spades] 0:00:20.434 277M / 6G INFO General (kmer_coverage_model.cpp : 375) Estimated genome size (ignoring repeats): 3694392 [spades] 0:00:20.435 277M / 6G INFO General (genomic_info_filler.cpp : 53) Mean coverage was calculated as 40.7131 [spades] 0:00:20.435 277M / 6G INFO General (genomic_info_filler.cpp : 68) EC coverage threshold value was calculated as 21 [spades] 0:00:20.436 277M / 6G INFO General (genomic_info_filler.cpp : 69) Trusted kmer low bound: 0 [spades] 0:00:20.436 277M / 6G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:20.437 277M / 6G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:20.438 277M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:20.438 277M / 6G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:20.440 275M / 6G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:20.441 275M / 6G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66572 Gb [spades] 0:00:20.441 275M / 6G INFO General (kmer_splitters.hpp : 97) Using cell size of 46603 [spades] 0:00:20.939 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 543802 edges [spades] 0:00:20.940 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 543802 sequences. [spades] 0:00:21.011 322M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:21.363 308M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14702542 kmers in total. [spades] 0:00:21.365 308M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:21.692 308M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:22.060 311M / 6G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:22.604 311M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6825608 bytes occupied (3.71397 bits per kmer). [spades] 0:00:22.738 567M / 6G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:23.036 563M / 6G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:23.038 563M / 6G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:23.389 576M / 6G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:23.887 493M / 6G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:23.888 493M / 6G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:23.958 493M / 6G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:24.253 495M / 6G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 181 gaps after checking 2837 candidates [spades] 0:00:24.323 494M / 6G INFO StageManager (stage.cpp : 166) STAGE == Raw Simplification [spades] 0:00:24.334 238M / 6G INFO General (simplification.cpp : 128) PROCEDURE == InitialCleaning [spades] 0:00:24.335 238M / 6G INFO General (graph_simplification.hpp : 671) Flanking coverage based disconnection disabled [spades] 0:00:24.336 238M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Self conjugate edge remover [spades] 0:00:24.352 238M / 6G INFO Simplification (parallel_processing.hpp : 167) Self conjugate edge remover triggered 0 times [spades] 0:00:24.353 238M / 6G INFO StageManager (stage.cpp : 166) STAGE == Simplification [spades] 0:00:24.354 238M / 6G INFO General (simplification.cpp : 383) Graph simplification started [spades] 0:00:24.355 238M / 6G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:24.355 238M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 1 [spades] 0:00:24.356 238M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.222 221M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 80665 times [spades] 0:00:25.223 221M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:27.681 302M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 9161 times [spades] 0:00:27.682 302M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:27.786 301M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 3515 times [spades] 0:00:27.787 301M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 2 [spades] 0:00:27.787 301M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:27.802 301M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 426 times [spades] 0:00:27.803 301M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:27.900 305M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 216 times [spades] 0:00:27.901 305M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:27.942 304M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 1824 times [spades] 0:00:27.943 304M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 3 [spades] 0:00:27.944 304M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:27.946 304M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 39 times [spades] 0:00:27.947 304M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:27.989 305M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 86 times [spades] 0:00:27.990 305M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.004 305M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 611 times [spades] 0:00:28.005 305M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 4 [spades] 0:00:28.005 305M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.006 305M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 3 times [spades] 0:00:28.007 305M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.035 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 38 times [spades] 0:00:28.036 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.046 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 422 times [spades] 0:00:28.046 307M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 5 [spades] 0:00:28.047 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.048 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 3 times [spades] 0:00:28.049 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.054 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 10 times [spades] 0:00:28.054 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.066 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 507 times [spades] 0:00:28.067 307M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 6 [spades] 0:00:28.067 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.068 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.069 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.072 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 6 times [spades] 0:00:28.072 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.085 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 588 times [spades] 0:00:28.086 307M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 7 [spades] 0:00:28.087 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.088 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.088 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.089 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.090 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.103 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 587 times [spades] 0:00:28.104 307M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 8 [spades] 0:00:28.104 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.105 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:28.106 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.107 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.107 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.120 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 588 times [spades] 0:00:28.121 307M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 9 [spades] 0:00:28.121 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.122 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.123 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.124 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 2 times [spades] 0:00:28.125 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.139 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 622 times [spades] 0:00:28.140 307M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 10 [spades] 0:00:28.140 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.141 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.142 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.142 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.143 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.156 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 579 times [spades] 0:00:28.157 307M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 11 [spades] 0:00:28.157 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.167 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:28.168 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.195 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:28.196 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.206 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:28.207 307M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 12 [spades] 0:00:28.208 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.208 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.209 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.210 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.211 307M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.212 307M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:28.221 307M / 6G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:28.222 307M / 6G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:28.222 307M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:28.223 307M / 6G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:28.225 307M / 6G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:28.226 307M / 6G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.6642 Gb [spades] 0:00:28.227 307M / 6G INFO General (kmer_splitters.hpp : 97) Using cell size of 46603 [spades] 0:00:28.582 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 107686 edges [spades] 0:00:28.584 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 107686 sequences. [spades] 0:00:28.647 340M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:28.911 339M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 9665118 kmers in total. [spades] 0:00:28.913 339M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:29.135 339M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:29.377 341M / 6G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:29.733 341M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 4489808 bytes occupied (3.7163 bits per kmer). [spades] 0:00:29.874 501M / 6G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:30.062 501M / 6G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:30.065 501M / 6G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:30.186 505M / 6G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:31.206 496M / 6G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:31.214 496M / 6G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:31.279 488M / 6G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:31.375 488M / 6G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 20 gaps after checking 1824 candidates [spades] 0:00:31.413 488M / 6G INFO StageManager (stage.cpp : 166) STAGE == Simplification Cleanup [spades] 0:00:31.414 488M / 6G INFO General (simplification.cpp : 196) PROCEDURE == Post simplification [spades] 0:00:31.415 488M / 6G INFO General (graph_simplification.hpp : 456) Disconnection of relatively low covered edges disabled [spades] 0:00:31.416 488M / 6G INFO General (graph_simplification.hpp : 493) Complex tip clipping disabled [spades] 0:00:31.417 488M / 6G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:31.417 488M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:31.427 488M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:31.428 488M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:31.455 481M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:31.456 481M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:31.466 481M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:31.468 481M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:31.492 480M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:31.494 480M / 6G INFO General (simplification.cpp : 343) Disrupting self-conjugate edges [spades] 0:00:31.549 480M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Removing isolated edges [spades] 0:00:33.216 476M / 6G INFO Simplification (parallel_processing.hpp : 167) Removing isolated edges triggered 32756 times [spades] 0:00:33.217 476M / 6G INFO General (simplification.cpp : 496) Counting average coverage [spades] 0:00:33.234 476M / 6G INFO General (simplification.cpp : 502) Average coverage = 29.224 [spades] 0:00:33.235 476M / 6G INFO StageManager (stage.cpp : 166) STAGE == Contig Output [spades] 0:00:33.240 476M / 6G INFO General (read_converter.cpp : 102) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K81/simplified_contigs [spades] 0:00:33.250 476M / 6G INFO General (binary_converter.cpp : 96) 16384 reads processed [spades] 0:00:33.273 476M / 6G INFO General (binary_converter.cpp : 111) 21067 reads written [spades] 0:00:33.276 476M / 6G INFO General (pipeline.cpp : 259) SPAdes finished [spades] 0:00:33.554 285M / 6G INFO General (main.cpp : 107) Assembling time: 0 hours 0 minutes 33 seconds [spades] [spades] ===== K81 finished. [spades] [spades] [spades] ===== K91 started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/spades-core /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K91/configs/config.info /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K91/configs/isolate_mode.info [spades] [spades] WARNING: Try to use logger before create one. Level=INFO. Message=Additional contigs is /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K81/simplified_contigs [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K91/configs/config.info [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K91/configs/isolate_mode.info [spades] 0:00:00.000 7M / 9M INFO General (memory_limit.cpp : 49) Memory limit set to 240 Gb [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 85) Starting SPAdes, built from N/A, git revision N/A [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 86) Maximum k-mer length: 128 [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 87) Assembling dataset (/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/dataset.info) with K=91 [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 88) Maximum # of threads to use (adjusted due to OMP capabilities): 30 [spades] 0:00:00.000 7M / 9M INFO General (pipeline.cpp : 194) SPAdes started [spades] 0:00:00.000 7M / 9M INFO General (pipeline.cpp : 201) Starting from stage: read_conversion [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 207) Two-step RR enabled: 0 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 218) Will need read mapping, kmer mapper will be attached [spades] 0:00:00.001 7M / 9M INFO StageManager (stage.cpp : 166) STAGE == Binary Read Conversion [spades] 0:00:00.002 7M / 9M INFO General (read_converter.cpp : 53) Binary reads detected [spades] 0:00:00.004 8M / 9M INFO StageManager (stage.cpp : 166) STAGE == de Bruijn graph construction [spades] 0:00:00.004 8M / 9M INFO General (construction.cpp : 115) Contigs from previous K will be used: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K81/simplified_contigs [spades] 0:00:00.007 8M / 10M INFO General (construction.cpp : 150) Max read length 280 [spades] 0:00:00.008 8M / 10M INFO General (construction.cpp : 153) Max read length without merged 150 [spades] 0:00:00.008 8M / 10M INFO General (construction.cpp : 156) Average read length 178.044 [spades] 0:00:00.008 8M / 10M INFO General (stage.cpp : 113) PROCEDURE == k+1-mer counting [spades] 0:00:00.008 8M / 10M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 900 files using 30 threads. This might take a while. [spades] 0:00:00.009 8M / 10M INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:00.009 8M / 10M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66665 Gb [spades] 0:00:00.009 8M / 10M INFO General (kmer_splitters.hpp : 97) Using cell size of 24855 [spades] 0:00:03.159 21G / 21G INFO General (kmer_splitters.hpp : 287) Processed 4652930 reads [spades] 0:00:03.564 398M / 5G INFO General (kmer_splitters.hpp : 293) Used 4652930 reads [spades] 0:00:03.565 398M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:04.098 398M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14528682 kmers in total. [spades] 0:00:04.100 398M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:04.445 393M / 5G INFO General (stage.cpp : 113) PROCEDURE == Extension index construction [spades] 0:00:04.446 393M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:04.446 393M / 5G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:04.447 393M / 5G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:04.448 393M / 5G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66662 Gb [spades] 0:00:04.448 393M / 5G INFO General (kmer_splitters.hpp : 97) Using cell size of 46603 [spades] 0:00:05.302 18G / 18G INFO General (kmer_splitters.hpp : 364) Processed 14528682 kmers [spades] 0:00:05.303 18G / 18G INFO General (kmer_splitters.hpp : 369) Used 14528682 kmers. [spades] 0:00:05.416 420M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:05.765 420M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14550356 kmers in total. [spades] 0:00:05.772 420M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:06.089 420M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:06.455 418M / 5G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:07.016 418M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6755288 bytes occupied (3.71416 bits per kmer). [spades] 0:00:07.041 432M / 5G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 99) Building k-mer extensions from k+1-mers [spades] 0:00:07.569 432M / 5G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 103) Building k-mer extensions from k+1-mers finished. [spades] 0:00:07.577 401M / 5G INFO General (stage.cpp : 113) PROCEDURE == Condensing graph [spades] 0:00:07.584 401M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 354) Extracting unbranching paths [spades] 0:00:08.230 300M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 373) Extracting unbranching paths finished. 260332 sequences extracted [spades] 0:00:08.644 298M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 309) Collecting perfect loops [spades] 0:00:08.793 298M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 342) Collecting perfect loops finished. 0 loops collected [spades] 0:00:09.981 229M / 5G INFO General (stage.cpp : 113) PROCEDURE == Filling coverage indices (PHM) [spades] 0:00:09.982 229M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:09.983 229M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:10.218 234M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6752648 bytes occupied (3.71824 bits per kmer). [spades] 0:00:10.260 290M / 5G INFO General (construction.cpp : 429) Collecting k-mer coverage information from reads, this takes a while. [spades] 0:00:13.510 290M / 5G INFO General (construction.cpp : 549) Filling coverage and flanking coverage from PHM [spades] 0:00:13.999 290M / 5G INFO General (construction.cpp : 505) Processed 520664 edges [spades] 0:00:14.092 174M / 5G INFO StageManager (stage.cpp : 166) STAGE == EC Threshold Finding [spades] 0:00:14.093 174M / 5G INFO General (kmer_coverage_model.cpp : 181) Kmer coverage valley at: 81 [spades] 0:00:14.094 174M / 5G INFO General (kmer_coverage_model.cpp : 201) K-mer histogram maximum: 83 [spades] 0:00:14.095 174M / 5G INFO General (kmer_coverage_model.cpp : 237) Estimated median coverage: 84. Coverage mad: 2.9652 [spades] 0:00:14.095 174M / 5G INFO General (kmer_coverage_model.cpp : 259) Fitting coverage model [spades] 0:00:14.181 174M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 2 [spades] 0:00:14.382 174M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 4 [spades] 0:00:15.017 174M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 8 [spades] 0:00:16.004 174M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 16 [spades] 0:00:17.254 174M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 32 [spades] 0:00:18.172 174M / 5G INFO General (kmer_coverage_model.cpp : 309) Fitted mean coverage: 34.3821. Fitted coverage std. dev: 19.9294 [spades] 0:00:18.172 174M / 5G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 17 [spades] 0:00:18.175 174M / 5G INFO General (kmer_coverage_model.cpp : 334) Probability of erroneous kmer at valley: 0.337182 [spades] 0:00:18.175 174M / 5G WARN General (kmer_coverage_model.cpp : 366) Failed to determine erroneous kmer threshold. Threshold set to: 17 [spades] 0:00:18.176 174M / 5G INFO General (kmer_coverage_model.cpp : 375) Estimated genome size (ignoring repeats): 3934157 [spades] 0:00:18.177 174M / 5G INFO General (genomic_info_filler.cpp : 55) Failed to estimate mean coverage [spades] 0:00:18.177 174M / 5G INFO General (genomic_info_filler.cpp : 68) EC coverage threshold value was calculated as 17 [spades] 0:00:18.178 174M / 5G INFO General (genomic_info_filler.cpp : 69) Trusted kmer low bound: 0 [spades] 0:00:18.178 174M / 5G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:18.179 174M / 5G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:18.180 174M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:18.180 174M / 5G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:18.181 172M / 5G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:18.183 172M / 5G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66577 Gb [spades] 0:00:18.183 172M / 5G INFO General (kmer_splitters.hpp : 97) Using cell size of 46603 [spades] 0:00:18.668 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 520664 edges [spades] 0:00:18.670 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 520664 sequences. [spades] 0:00:18.747 239M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:19.075 233M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14528682 kmers in total. [spades] 0:00:19.078 233M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:19.403 233M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:19.805 235M / 5G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:20.337 235M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6745208 bytes occupied (3.71415 bits per kmer). [spades] 0:00:20.479 459M / 5G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:20.787 451M / 5G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:20.790 451M / 5G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:21.172 465M / 5G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:21.627 441M / 5G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:21.628 441M / 5G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:21.702 442M / 5G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:22.007 436M / 5G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 224 gaps after checking 2923 candidates [spades] 0:00:22.092 436M / 5G INFO StageManager (stage.cpp : 166) STAGE == Raw Simplification [spades] 0:00:22.106 212M / 5G INFO General (simplification.cpp : 128) PROCEDURE == InitialCleaning [spades] 0:00:22.107 212M / 5G INFO General (graph_simplification.hpp : 671) Flanking coverage based disconnection disabled [spades] 0:00:22.108 212M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Self conjugate edge remover [spades] 0:00:22.124 212M / 5G INFO Simplification (parallel_processing.hpp : 167) Self conjugate edge remover triggered 0 times [spades] 0:00:22.126 212M / 5G INFO StageManager (stage.cpp : 166) STAGE == Simplification [spades] 0:00:22.126 212M / 5G INFO General (simplification.cpp : 383) Graph simplification started [spades] 0:00:22.127 212M / 5G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:22.128 212M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 1 [spades] 0:00:22.129 212M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:22.986 205M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 77180 times [spades] 0:00:22.988 205M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.102 277M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 7165 times [spades] 0:00:25.103 277M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.181 275M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 2288 times [spades] 0:00:25.183 275M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 2 [spades] 0:00:25.184 275M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.195 275M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 349 times [spades] 0:00:25.196 275M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.272 278M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 153 times [spades] 0:00:25.273 278M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.315 278M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 1853 times [spades] 0:00:25.316 278M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 3 [spades] 0:00:25.317 278M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.320 278M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 58 times [spades] 0:00:25.320 278M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.369 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 87 times [spades] 0:00:25.370 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.386 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 665 times [spades] 0:00:25.387 280M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 4 [spades] 0:00:25.387 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.388 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 8 times [spades] 0:00:25.389 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.416 281M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 45 times [spades] 0:00:25.416 281M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.427 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 349 times [spades] 0:00:25.427 280M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 5 [spades] 0:00:25.428 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.429 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:25.430 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.437 281M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 11 times [spades] 0:00:25.438 281M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.447 281M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 397 times [spades] 0:00:25.448 281M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 6 [spades] 0:00:25.448 281M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.449 281M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:25.450 281M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.455 281M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 7 times [spades] 0:00:25.455 281M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.466 281M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 453 times [spades] 0:00:25.467 281M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 7 [spades] 0:00:25.467 281M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.468 281M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:25.469 281M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.471 281M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 3 times [spades] 0:00:25.471 281M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.483 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 481 times [spades] 0:00:25.483 280M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 8 [spades] 0:00:25.484 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.485 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:25.485 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.486 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:25.487 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.498 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 489 times [spades] 0:00:25.499 280M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 9 [spades] 0:00:25.499 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.500 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:25.501 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.502 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:25.502 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.513 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 479 times [spades] 0:00:25.514 280M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 10 [spades] 0:00:25.514 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.515 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:25.516 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.517 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:25.518 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.529 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 504 times [spades] 0:00:25.530 280M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 11 [spades] 0:00:25.531 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.541 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 3 times [spades] 0:00:25.543 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.573 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:25.574 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.585 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:25.586 280M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 12 [spades] 0:00:25.587 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.588 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:25.589 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.590 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:25.591 280M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:25.592 280M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:25.601 280M / 5G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:25.602 280M / 5G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:25.603 280M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:25.604 280M / 5G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:25.606 280M / 5G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:25.608 280M / 5G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66447 Gb [spades] 0:00:25.608 280M / 5G INFO General (kmer_splitters.hpp : 97) Using cell size of 46603 [spades] 0:00:25.947 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 121512 edges [spades] 0:00:25.949 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 121512 sequences. [spades] 0:00:26.013 310M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:26.281 310M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 9867661 kmers in total. [spades] 0:00:26.284 310M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:26.509 310M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:26.768 312M / 5G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:27.154 312M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 4583880 bytes occupied (3.71628 bits per kmer). [spades] 0:00:27.308 472M / 5G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:27.495 465M / 5G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:27.497 465M / 5G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:27.641 471M / 5G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:28.535 460M / 5G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:28.537 460M / 5G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:28.621 461M / 5G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:28.737 455M / 5G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 22 gaps after checking 1986 candidates [spades] 0:00:28.780 455M / 5G INFO StageManager (stage.cpp : 166) STAGE == Simplification Cleanup [spades] 0:00:28.781 455M / 5G INFO General (simplification.cpp : 196) PROCEDURE == Post simplification [spades] 0:00:28.782 455M / 5G INFO General (graph_simplification.hpp : 456) Disconnection of relatively low covered edges disabled [spades] 0:00:28.783 455M / 5G INFO General (graph_simplification.hpp : 493) Complex tip clipping disabled [spades] 0:00:28.783 455M / 5G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:28.784 455M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.796 455M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.797 455M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.826 455M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.827 455M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.838 455M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.839 455M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.867 454M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.868 454M / 5G INFO General (simplification.cpp : 343) Disrupting self-conjugate edges [spades] 0:00:28.929 454M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Removing isolated edges [spades] 0:00:30.739 444M / 5G INFO Simplification (parallel_processing.hpp : 167) Removing isolated edges triggered 39419 times [spades] 0:00:30.740 444M / 5G INFO General (simplification.cpp : 496) Counting average coverage [spades] 0:00:30.756 444M / 5G INFO General (simplification.cpp : 502) Average coverage = 25.907 [spades] 0:00:30.757 444M / 5G INFO StageManager (stage.cpp : 166) STAGE == Contig Output [spades] 0:00:30.759 444M / 5G INFO General (read_converter.cpp : 102) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K91/simplified_contigs [spades] 0:00:30.775 448M / 5G INFO General (binary_converter.cpp : 96) 16384 reads processed [spades] 0:00:30.799 448M / 5G INFO General (binary_converter.cpp : 111) 21313 reads written [spades] 0:00:30.803 447M / 5G INFO General (pipeline.cpp : 259) SPAdes finished [spades] 0:00:31.104 263M / 5G INFO General (main.cpp : 107) Assembling time: 0 hours 0 minutes 31 seconds [spades] [spades] ===== K91 finished. [spades] [spades] [spades] ===== K101 started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/spades-core /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K101/configs/config.info /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K101/configs/isolate_mode.info [spades] [spades] WARNING: Try to use logger before create one. Level=INFO. Message=Additional contigs is /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K91/simplified_contigs [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K101/configs/config.info [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K101/configs/isolate_mode.info [spades] 0:00:00.001 7M / 9M INFO General (memory_limit.cpp : 49) Memory limit set to 240 Gb [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 85) Starting SPAdes, built from N/A, git revision N/A [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 86) Maximum k-mer length: 128 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 87) Assembling dataset (/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/dataset.info) with K=101 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 88) Maximum # of threads to use (adjusted due to OMP capabilities): 30 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 194) SPAdes started [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 201) Starting from stage: read_conversion [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 207) Two-step RR enabled: 0 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 218) Will need read mapping, kmer mapper will be attached [spades] 0:00:00.001 7M / 9M INFO StageManager (stage.cpp : 166) STAGE == Binary Read Conversion [spades] 0:00:00.003 7M / 9M INFO General (read_converter.cpp : 53) Binary reads detected [spades] 0:00:00.005 8M / 9M INFO StageManager (stage.cpp : 166) STAGE == de Bruijn graph construction [spades] 0:00:00.005 8M / 9M INFO General (construction.cpp : 115) Contigs from previous K will be used: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K91/simplified_contigs [spades] 0:00:00.009 8M / 10M INFO General (construction.cpp : 150) Max read length 280 [spades] 0:00:00.009 8M / 10M INFO General (construction.cpp : 153) Max read length without merged 150 [spades] 0:00:00.009 8M / 10M INFO General (construction.cpp : 156) Average read length 178.044 [spades] 0:00:00.009 8M / 10M INFO General (stage.cpp : 113) PROCEDURE == k+1-mer counting [spades] 0:00:00.009 8M / 10M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 900 files using 30 threads. This might take a while. [spades] 0:00:00.010 8M / 10M INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:00.010 8M / 10M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66665 Gb [spades] 0:00:00.011 8M / 10M INFO General (kmer_splitters.hpp : 97) Using cell size of 18641 [spades] 0:00:03.076 21G / 21G INFO General (kmer_splitters.hpp : 287) Processed 4653422 reads [spades] 0:00:03.539 419M / 6G INFO General (kmer_splitters.hpp : 293) Used 4653422 reads [spades] 0:00:03.540 419M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:04.092 421M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14243467 kmers in total. [spades] 0:00:04.094 421M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:04.539 415M / 6G INFO General (stage.cpp : 113) PROCEDURE == Extension index construction [spades] 0:00:04.540 415M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:04.541 415M / 6G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:04.541 415M / 6G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:04.542 415M / 6G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66662 Gb [spades] 0:00:04.542 415M / 6G INFO General (kmer_splitters.hpp : 97) Using cell size of 34952 [spades] 0:00:05.533 18G / 18G INFO General (kmer_splitters.hpp : 364) Processed 14243467 kmers [spades] 0:00:05.534 18G / 18G INFO General (kmer_splitters.hpp : 369) Used 14243467 kmers. [spades] 0:00:05.663 418M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:06.009 418M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14276171 kmers in total. [spades] 0:00:06.011 418M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:06.414 418M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:06.780 411M / 6G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:07.478 411M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6628112 bytes occupied (3.71422 bits per kmer). [spades] 0:00:07.498 425M / 6G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 99) Building k-mer extensions from k+1-mers [spades] 0:00:08.184 425M / 6G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 103) Building k-mer extensions from k+1-mers finished. [spades] 0:00:08.191 383M / 6G INFO General (stage.cpp : 113) PROCEDURE == Condensing graph [spades] 0:00:08.197 383M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 354) Extracting unbranching paths [spades] 0:00:08.865 283M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 373) Extracting unbranching paths finished. 248705 sequences extracted [spades] 0:00:09.286 283M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 309) Collecting perfect loops [spades] 0:00:09.432 283M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 342) Collecting perfect loops finished. 0 loops collected [spades] 0:00:10.573 206M / 6G INFO General (stage.cpp : 113) PROCEDURE == Filling coverage indices (PHM) [spades] 0:00:10.574 206M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:10.575 206M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:10.818 208M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6620312 bytes occupied (3.71837 bits per kmer). [spades] 0:00:10.855 264M / 6G INFO General (construction.cpp : 429) Collecting k-mer coverage information from reads, this takes a while. [spades] 0:00:13.776 264M / 6G INFO General (construction.cpp : 549) Filling coverage and flanking coverage from PHM [spades] 0:00:14.249 264M / 6G INFO General (construction.cpp : 505) Processed 497410 edges [spades] 0:00:14.367 172M / 6G INFO StageManager (stage.cpp : 166) STAGE == EC Threshold Finding [spades] 0:00:14.369 172M / 6G INFO General (kmer_coverage_model.cpp : 181) Kmer coverage valley at: 68 [spades] 0:00:14.370 172M / 6G INFO General (kmer_coverage_model.cpp : 201) K-mer histogram maximum: 69 [spades] 0:00:14.371 172M / 6G WARN General (kmer_coverage_model.cpp : 218) Too many erroneous kmers, the estimates might be unreliable [spades] 0:00:14.371 172M / 6G INFO General (kmer_coverage_model.cpp : 237) Estimated median coverage: 69. Coverage mad: 27.5381 [spades] 0:00:14.373 172M / 6G INFO General (kmer_coverage_model.cpp : 259) Fitting coverage model [spades] 0:00:14.427 172M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 2 [spades] 0:00:14.548 172M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 4 [spades] 0:00:14.983 172M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 8 [spades] 0:00:15.532 172M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 16 [spades] 0:00:16.453 172M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 32 [spades] 0:00:16.937 172M / 6G INFO General (kmer_coverage_model.cpp : 309) Fitted mean coverage: 30.0274. Fitted coverage std. dev: 16.9389 [spades] 0:00:16.938 172M / 6G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 15 [spades] 0:00:16.940 172M / 6G INFO General (kmer_coverage_model.cpp : 334) Probability of erroneous kmer at valley: 0.344621 [spades] 0:00:16.941 172M / 6G WARN General (kmer_coverage_model.cpp : 366) Failed to determine erroneous kmer threshold. Threshold set to: 15 [spades] 0:00:16.941 172M / 6G INFO General (kmer_coverage_model.cpp : 375) Estimated genome size (ignoring repeats): 3958087 [spades] 0:00:16.942 172M / 6G INFO General (genomic_info_filler.cpp : 55) Failed to estimate mean coverage [spades] 0:00:16.942 172M / 6G INFO General (genomic_info_filler.cpp : 68) EC coverage threshold value was calculated as 15 [spades] 0:00:16.943 172M / 6G INFO General (genomic_info_filler.cpp : 69) Trusted kmer low bound: 0 [spades] 0:00:16.944 172M / 6G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:16.945 172M / 6G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:16.945 172M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:16.946 172M / 6G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:16.947 170M / 6G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:16.948 170M / 6G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66578 Gb [spades] 0:00:16.949 170M / 6G INFO General (kmer_splitters.hpp : 97) Using cell size of 34952 [spades] 0:00:17.529 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 497410 edges [spades] 0:00:17.530 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 497410 sequences. [spades] 0:00:17.609 240M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:17.943 234M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 14243467 kmers in total. [spades] 0:00:17.945 234M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:18.358 234M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:18.741 230M / 6G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:19.461 230M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6612936 bytes occupied (3.71423 bits per kmer). [spades] 0:00:19.599 454M / 6G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:19.886 454M / 6G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:19.888 454M / 6G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:20.267 468M / 6G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:20.701 439M / 6G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:20.703 439M / 6G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:20.793 440M / 6G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:21.112 440M / 6G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 263 gaps after checking 2965 candidates [spades] 0:00:21.228 432M / 6G INFO StageManager (stage.cpp : 166) STAGE == Raw Simplification [spades] 0:00:21.238 208M / 6G INFO General (simplification.cpp : 128) PROCEDURE == InitialCleaning [spades] 0:00:21.239 208M / 6G INFO General (graph_simplification.hpp : 671) Flanking coverage based disconnection disabled [spades] 0:00:21.240 208M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Self conjugate edge remover [spades] 0:00:21.256 208M / 6G INFO Simplification (parallel_processing.hpp : 167) Self conjugate edge remover triggered 0 times [spades] 0:00:21.257 208M / 6G INFO StageManager (stage.cpp : 166) STAGE == Simplification [spades] 0:00:21.258 208M / 6G INFO General (simplification.cpp : 383) Graph simplification started [spades] 0:00:21.259 208M / 6G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:21.260 208M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 1 [spades] 0:00:21.261 208M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:22.088 206M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 72916 times [spades] 0:00:22.090 206M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:23.934 267M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 5349 times [spades] 0:00:23.935 267M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:23.997 266M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 1746 times [spades] 0:00:23.998 266M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 2 [spades] 0:00:23.999 266M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.008 266M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 271 times [spades] 0:00:24.009 266M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:24.073 269M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 117 times [spades] 0:00:24.074 269M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:24.110 269M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 1537 times [spades] 0:00:24.111 269M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 3 [spades] 0:00:24.112 269M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.114 269M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 41 times [spades] 0:00:24.115 269M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:24.169 270M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 83 times [spades] 0:00:24.170 270M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:24.184 270M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 581 times [spades] 0:00:24.184 270M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 4 [spades] 0:00:24.185 270M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.186 270M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 15 times [spades] 0:00:24.187 270M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:24.210 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 38 times [spades] 0:00:24.211 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:24.219 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 334 times [spades] 0:00:24.220 271M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 5 [spades] 0:00:24.220 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.221 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:24.222 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:24.229 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 12 times [spades] 0:00:24.230 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:24.239 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 357 times [spades] 0:00:24.239 271M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 6 [spades] 0:00:24.240 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.241 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:24.242 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:24.247 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 7 times [spades] 0:00:24.248 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:24.258 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 397 times [spades] 0:00:24.258 271M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 7 [spades] 0:00:24.259 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.259 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:24.260 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:24.262 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 2 times [spades] 0:00:24.263 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:24.273 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 452 times [spades] 0:00:24.274 271M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 8 [spades] 0:00:24.274 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.275 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:24.276 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:24.277 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:24.277 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:24.288 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 450 times [spades] 0:00:24.288 271M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 9 [spades] 0:00:24.289 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.290 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:24.290 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:24.291 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:24.292 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:24.301 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 418 times [spades] 0:00:24.302 271M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 10 [spades] 0:00:24.303 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.303 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:24.304 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:24.305 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:24.305 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:24.316 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 441 times [spades] 0:00:24.316 271M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 11 [spades] 0:00:24.317 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.328 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 3 times [spades] 0:00:24.329 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:24.359 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:24.360 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:24.371 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:24.372 271M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 12 [spades] 0:00:24.373 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:24.374 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:24.375 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:24.375 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:24.376 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:24.377 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:24.386 271M / 6G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:24.387 271M / 6G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:24.388 271M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:24.389 271M / 6G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:24.390 271M / 6G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:24.392 271M / 6G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66455 Gb [spades] 0:00:24.392 271M / 6G INFO General (kmer_splitters.hpp : 97) Using cell size of 34952 [spades] 0:00:24.794 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 133844 edges [spades] 0:00:24.797 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 133844 sequences. [spades] 0:00:24.870 317M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:25.160 317M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 9942907 kmers in total. [spades] 0:00:25.164 317M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:25.457 317M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:25.744 309M / 6G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:26.207 309M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 4618920 bytes occupied (3.71635 bits per kmer). [spades] 0:00:26.370 469M / 6G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:26.560 461M / 6G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:26.563 461M / 6G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:26.718 468M / 6G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:27.535 453M / 6G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:27.536 453M / 6G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:27.623 454M / 6G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:27.762 447M / 6G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 32 gaps after checking 2250 candidates [spades] 0:00:27.805 446M / 6G INFO StageManager (stage.cpp : 166) STAGE == Simplification Cleanup [spades] 0:00:27.806 446M / 6G INFO General (simplification.cpp : 196) PROCEDURE == Post simplification [spades] 0:00:27.807 446M / 6G INFO General (graph_simplification.hpp : 456) Disconnection of relatively low covered edges disabled [spades] 0:00:27.808 446M / 6G INFO General (graph_simplification.hpp : 493) Complex tip clipping disabled [spades] 0:00:27.809 446M / 6G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:27.809 446M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:27.819 446M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:27.820 446M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:27.852 446M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:27.854 446M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:27.865 446M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:27.866 446M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:27.897 446M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:27.899 446M / 6G INFO General (simplification.cpp : 343) Disrupting self-conjugate edges [spades] 0:00:27.961 446M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Removing isolated edges [spades] 0:00:29.928 440M / 6G INFO Simplification (parallel_processing.hpp : 167) Removing isolated edges triggered 46825 times [spades] 0:00:29.929 440M / 6G INFO General (simplification.cpp : 496) Counting average coverage [spades] 0:00:29.943 440M / 6G INFO General (simplification.cpp : 502) Average coverage = 22.6677 [spades] 0:00:29.944 440M / 6G INFO StageManager (stage.cpp : 166) STAGE == Contig Output [spades] 0:00:29.957 440M / 6G INFO General (read_converter.cpp : 102) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K101/simplified_contigs [spades] 0:00:29.977 444M / 6G INFO General (binary_converter.cpp : 96) 16384 reads processed [spades] 0:00:30.001 444M / 6G INFO General (binary_converter.cpp : 111) 20065 reads written [spades] 0:00:30.005 444M / 6G INFO General (pipeline.cpp : 259) SPAdes finished [spades] 0:00:30.260 261M / 6G INFO General (main.cpp : 107) Assembling time: 0 hours 0 minutes 30 seconds [spades] [spades] ===== K101 finished. [spades] [spades] [spades] ===== K111 started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/spades-core /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K111/configs/config.info /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K111/configs/isolate_mode.info [spades] [spades] WARNING: Try to use logger before create one. Level=INFO. Message=Additional contigs is /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K101/simplified_contigs [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K111/configs/config.info [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K111/configs/isolate_mode.info [spades] 0:00:00.001 7M / 9M INFO General (memory_limit.cpp : 49) Memory limit set to 240 Gb [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 85) Starting SPAdes, built from N/A, git revision N/A [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 86) Maximum k-mer length: 128 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 87) Assembling dataset (/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/dataset.info) with K=111 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 88) Maximum # of threads to use (adjusted due to OMP capabilities): 30 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 194) SPAdes started [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 201) Starting from stage: read_conversion [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 207) Two-step RR enabled: 0 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 218) Will need read mapping, kmer mapper will be attached [spades] 0:00:00.001 7M / 9M INFO StageManager (stage.cpp : 166) STAGE == Binary Read Conversion [spades] 0:00:00.003 7M / 9M INFO General (read_converter.cpp : 53) Binary reads detected [spades] 0:00:00.004 8M / 9M INFO StageManager (stage.cpp : 166) STAGE == de Bruijn graph construction [spades] 0:00:00.005 8M / 9M INFO General (construction.cpp : 115) Contigs from previous K will be used: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K101/simplified_contigs [spades] 0:00:00.008 9M / 10M INFO General (construction.cpp : 150) Max read length 280 [spades] 0:00:00.008 9M / 10M INFO General (construction.cpp : 153) Max read length without merged 150 [spades] 0:00:00.008 9M / 10M INFO General (construction.cpp : 156) Average read length 178.044 [spades] 0:00:00.008 9M / 10M INFO General (stage.cpp : 113) PROCEDURE == k+1-mer counting [spades] 0:00:00.009 9M / 10M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 900 files using 30 threads. This might take a while. [spades] 0:00:00.009 9M / 10M INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:00.010 9M / 10M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66665 Gb [spades] 0:00:00.010 9M / 10M INFO General (kmer_splitters.hpp : 97) Using cell size of 18641 [spades] 0:00:02.728 21G / 21G INFO General (kmer_splitters.hpp : 287) Processed 4650926 reads [spades] 0:00:03.130 399M / 6G INFO General (kmer_splitters.hpp : 293) Used 4650926 reads [spades] 0:00:03.131 399M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:03.668 403M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 13840991 kmers in total. [spades] 0:00:03.670 403M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:04.103 398M / 6G INFO General (stage.cpp : 113) PROCEDURE == Extension index construction [spades] 0:00:04.104 398M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:04.105 398M / 6G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:04.105 398M / 6G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:04.106 398M / 6G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66662 Gb [spades] 0:00:04.106 398M / 6G INFO General (kmer_splitters.hpp : 97) Using cell size of 34952 [spades] 0:00:05.100 18G / 18G INFO General (kmer_splitters.hpp : 364) Processed 13840991 kmers [spades] 0:00:05.101 18G / 18G INFO General (kmer_splitters.hpp : 369) Used 13840991 kmers. [spades] 0:00:05.217 415M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:05.533 415M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 13886087 kmers in total. [spades] 0:00:05.535 415M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:05.927 415M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:06.277 407M / 6G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:06.951 407M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6447200 bytes occupied (3.71434 bits per kmer). [spades] 0:00:06.970 421M / 6G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 99) Building k-mer extensions from k+1-mers [spades] 0:00:07.578 421M / 6G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 103) Building k-mer extensions from k+1-mers finished. [spades] 0:00:07.587 382M / 6G INFO General (stage.cpp : 113) PROCEDURE == Condensing graph [spades] 0:00:07.592 382M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 354) Extracting unbranching paths [spades] 0:00:08.250 300M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 373) Extracting unbranching paths finished. 237294 sequences extracted [spades] 0:00:08.651 300M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 309) Collecting perfect loops [spades] 0:00:08.792 266M / 6G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 342) Collecting perfect loops finished. 0 loops collected [spades] 0:00:09.909 211M / 6G INFO General (stage.cpp : 113) PROCEDURE == Filling coverage indices (PHM) [spades] 0:00:09.910 211M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:09.911 211M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:10.144 225M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6433864 bytes occupied (3.71873 bits per kmer). [spades] 0:00:10.178 281M / 6G INFO General (construction.cpp : 429) Collecting k-mer coverage information from reads, this takes a while. [spades] 0:00:12.778 281M / 6G INFO General (construction.cpp : 549) Filling coverage and flanking coverage from PHM [spades] 0:00:13.238 281M / 6G INFO General (construction.cpp : 505) Processed 474588 edges [spades] 0:00:13.340 211M / 6G INFO StageManager (stage.cpp : 166) STAGE == EC Threshold Finding [spades] 0:00:13.341 211M / 6G INFO General (kmer_coverage_model.cpp : 181) Kmer coverage valley at: 118 [spades] 0:00:13.342 211M / 6G INFO General (kmer_coverage_model.cpp : 201) K-mer histogram maximum: 120 [spades] 0:00:13.343 211M / 6G INFO General (kmer_coverage_model.cpp : 237) Estimated median coverage: 121. Coverage mad: 2.9652 [spades] 0:00:13.343 211M / 6G INFO General (kmer_coverage_model.cpp : 259) Fitting coverage model [spades] 0:00:13.412 211M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 2 [spades] 0:00:13.525 211M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 4 [spades] 0:00:13.801 211M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 8 [spades] 0:00:14.575 211M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 16 [spades] 0:00:17.214 211M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 32 [spades] 0:00:21.030 173M / 6G INFO General (kmer_coverage_model.cpp : 295) ... iteration 64 [spades] 0:00:22.320 173M / 6G INFO General (kmer_coverage_model.cpp : 309) Fitted mean coverage: 25.0462. Fitted coverage std. dev: 15.9006 [spades] 0:00:22.321 173M / 6G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 2 [spades] 0:00:22.325 173M / 6G INFO General (kmer_coverage_model.cpp : 334) Probability of erroneous kmer at valley: 1 [spades] 0:00:22.325 173M / 6G INFO General (kmer_coverage_model.cpp : 358) Preliminary threshold calculated as: 21 [spades] 0:00:22.326 173M / 6G INFO General (kmer_coverage_model.cpp : 362) Threshold adjusted to: 13 [spades] 0:00:22.327 173M / 6G INFO General (kmer_coverage_model.cpp : 375) Estimated genome size (ignoring repeats): 3979708 [spades] 0:00:22.327 173M / 6G INFO General (genomic_info_filler.cpp : 53) Mean coverage was calculated as 25.0462 [spades] 0:00:22.328 173M / 6G INFO General (genomic_info_filler.cpp : 68) EC coverage threshold value was calculated as 13 [spades] 0:00:22.328 173M / 6G INFO General (genomic_info_filler.cpp : 69) Trusted kmer low bound: 0 [spades] 0:00:22.329 173M / 6G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:22.330 173M / 6G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:22.330 173M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:22.331 173M / 6G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:22.332 173M / 6G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:22.333 173M / 6G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.6658 Gb [spades] 0:00:22.334 173M / 6G INFO General (kmer_splitters.hpp : 97) Using cell size of 34952 [spades] 0:00:22.892 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 474588 edges [spades] 0:00:22.894 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 474588 sequences. [spades] 0:00:22.969 268M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:23.286 263M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 13840991 kmers in total. [spades] 0:00:23.288 263M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:23.681 263M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:24.036 260M / 6G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:24.696 260M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6426360 bytes occupied (3.71439 bits per kmer). [spades] 0:00:24.829 484M / 6G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:25.110 480M / 6G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:25.113 480M / 6G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:25.490 495M / 6G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:25.883 457M / 6G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:25.885 457M / 6G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:25.967 458M / 6G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:26.291 455M / 6G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 299 gaps after checking 3010 candidates [spades] 0:00:26.398 455M / 6G INFO StageManager (stage.cpp : 166) STAGE == Raw Simplification [spades] 0:00:26.408 231M / 6G INFO General (simplification.cpp : 128) PROCEDURE == InitialCleaning [spades] 0:00:26.409 231M / 6G INFO General (graph_simplification.hpp : 671) Flanking coverage based disconnection disabled [spades] 0:00:26.410 231M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Self conjugate edge remover [spades] 0:00:26.426 231M / 6G INFO Simplification (parallel_processing.hpp : 167) Self conjugate edge remover triggered 0 times [spades] 0:00:26.427 231M / 6G INFO StageManager (stage.cpp : 166) STAGE == Simplification [spades] 0:00:26.428 231M / 6G INFO General (simplification.cpp : 383) Graph simplification started [spades] 0:00:26.429 231M / 6G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:26.430 231M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 1 [spades] 0:00:26.430 231M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:27.199 222M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 67801 times [spades] 0:00:27.200 222M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.536 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 3628 times [spades] 0:00:28.538 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.589 269M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 1178 times [spades] 0:00:28.590 269M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 2 [spades] 0:00:28.591 269M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.598 269M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 240 times [spades] 0:00:28.599 269M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.638 270M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 71 times [spades] 0:00:28.639 270M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.665 270M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 1170 times [spades] 0:00:28.666 270M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 3 [spades] 0:00:28.667 270M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.669 270M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 38 times [spades] 0:00:28.669 270M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.706 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 58 times [spades] 0:00:28.707 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.720 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 568 times [spades] 0:00:28.721 271M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 4 [spades] 0:00:28.722 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.723 271M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 25 times [spades] 0:00:28.724 271M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.741 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 30 times [spades] 0:00:28.742 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.750 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 350 times [spades] 0:00:28.751 272M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 5 [spades] 0:00:28.752 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.753 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 11 times [spades] 0:00:28.753 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.764 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 16 times [spades] 0:00:28.765 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.772 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 306 times [spades] 0:00:28.773 272M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 6 [spades] 0:00:28.774 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.774 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 2 times [spades] 0:00:28.775 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.778 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 3 times [spades] 0:00:28.779 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.787 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 308 times [spades] 0:00:28.787 272M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 7 [spades] 0:00:28.788 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.789 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:28.789 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.792 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 3 times [spades] 0:00:28.792 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.801 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 375 times [spades] 0:00:28.802 272M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 8 [spades] 0:00:28.803 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.803 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.804 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.805 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.805 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.815 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 392 times [spades] 0:00:28.815 272M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 9 [spades] 0:00:28.816 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.817 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.817 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.818 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.819 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.828 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 367 times [spades] 0:00:28.828 272M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 10 [spades] 0:00:28.829 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.830 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.830 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.832 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 1 times [spades] 0:00:28.832 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.842 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 383 times [spades] 0:00:28.843 272M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 11 [spades] 0:00:28.843 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.855 272M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 5 times [spades] 0:00:28.857 272M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.889 273M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.890 273M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.903 273M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:28.904 273M / 6G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 12 [spades] 0:00:28.905 273M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:28.906 273M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:28.906 273M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:28.907 273M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:28.908 273M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:28.909 273M / 6G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:28.919 273M / 6G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:28.919 273M / 6G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:28.920 273M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:28.921 273M / 6G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:28.923 273M / 6G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:28.924 273M / 6G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66483 Gb [spades] 0:00:28.925 273M / 6G INFO General (kmer_splitters.hpp : 97) Using cell size of 34952 [spades] 0:00:29.319 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 149006 edges [spades] 0:00:29.321 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 149006 sequences. [spades] 0:00:29.392 282M / 6G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:29.706 281M / 6G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 9933920 kmers in total. [spades] 0:00:29.708 281M / 6G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:29.993 281M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:30.254 281M / 6G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:30.727 281M / 6G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 4614680 bytes occupied (3.7163 bits per kmer). [spades] 0:00:30.885 441M / 6G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:31.076 434M / 6G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:31.078 434M / 6G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:31.252 442M / 6G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:31.949 427M / 6G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:31.951 427M / 6G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:32.052 429M / 6G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:32.224 422M / 6G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 33 gaps after checking 2638 candidates [spades] 0:00:32.274 422M / 6G INFO StageManager (stage.cpp : 166) STAGE == Simplification Cleanup [spades] 0:00:32.275 422M / 6G INFO General (simplification.cpp : 196) PROCEDURE == Post simplification [spades] 0:00:32.276 422M / 6G INFO General (graph_simplification.hpp : 456) Disconnection of relatively low covered edges disabled [spades] 0:00:32.276 422M / 6G INFO General (graph_simplification.hpp : 493) Complex tip clipping disabled [spades] 0:00:32.277 422M / 6G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:32.278 422M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:32.289 422M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:32.291 422M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:32.322 422M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:32.323 422M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:32.336 422M / 6G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:32.337 422M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:32.367 422M / 6G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:32.369 422M / 6G INFO General (simplification.cpp : 343) Disrupting self-conjugate edges [spades] 0:00:32.435 422M / 6G INFO Simplification (parallel_processing.hpp : 165) Running Removing isolated edges [spades] 0:00:34.482 413M / 6G INFO Simplification (parallel_processing.hpp : 167) Removing isolated edges triggered 55606 times [spades] 0:00:34.483 413M / 6G INFO General (simplification.cpp : 496) Counting average coverage [spades] 0:00:34.497 413M / 6G INFO General (simplification.cpp : 502) Average coverage = 19.4967 [spades] 0:00:34.498 413M / 6G INFO StageManager (stage.cpp : 166) STAGE == Contig Output [spades] 0:00:34.499 413M / 6G INFO General (read_converter.cpp : 102) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K111/simplified_contigs [spades] 0:00:34.507 413M / 6G INFO General (binary_converter.cpp : 96) 16384 reads processed [spades] 0:00:34.528 413M / 6G INFO General (binary_converter.cpp : 111) 18864 reads written [spades] 0:00:34.532 414M / 6G INFO General (pipeline.cpp : 259) SPAdes finished [spades] 0:00:34.752 235M / 6G INFO General (main.cpp : 107) Assembling time: 0 hours 0 minutes 34 seconds [spades] [spades] ===== K111 finished. [spades] [spades] [spades] ===== K121 started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/spades-core /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/configs/config.info /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/configs/isolate_mode.info [spades] [spades] WARNING: Try to use logger before create one. Level=INFO. Message=Additional contigs is /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K111/simplified_contigs [spades] 0:00:00.000 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/configs/config.info [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 75) Loaded config from /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/configs/isolate_mode.info [spades] 0:00:00.001 7M / 9M INFO General (memory_limit.cpp : 49) Memory limit set to 240 Gb [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 85) Starting SPAdes, built from N/A, git revision N/A [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 86) Maximum k-mer length: 128 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 87) Assembling dataset (/DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/dataset.info) with K=121 [spades] 0:00:00.001 7M / 9M INFO General (main.cpp : 88) Maximum # of threads to use (adjusted due to OMP capabilities): 30 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 194) SPAdes started [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 201) Starting from stage: read_conversion [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 207) Two-step RR enabled: 0 [spades] 0:00:00.001 7M / 9M INFO General (pipeline.cpp : 218) Will need read mapping, kmer mapper will be attached [spades] 0:00:00.001 7M / 9M INFO StageManager (stage.cpp : 166) STAGE == Binary Read Conversion [spades] 0:00:00.002 7M / 9M INFO General (read_converter.cpp : 53) Binary reads detected [spades] 0:00:00.003 8M / 9M INFO StageManager (stage.cpp : 166) STAGE == de Bruijn graph construction [spades] 0:00:00.004 8M / 9M INFO General (construction.cpp : 115) Contigs from previous K will be used: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K111/simplified_contigs [spades] 0:00:00.007 9M / 10M INFO General (construction.cpp : 150) Max read length 280 [spades] 0:00:00.007 9M / 10M INFO General (construction.cpp : 153) Max read length without merged 150 [spades] 0:00:00.007 9M / 10M INFO General (construction.cpp : 156) Average read length 178.044 [spades] 0:00:00.007 9M / 10M INFO General (stage.cpp : 113) PROCEDURE == k+1-mer counting [spades] 0:00:00.008 9M / 10M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 900 files using 30 threads. This might take a while. [spades] 0:00:00.008 9M / 10M INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:00.009 9M / 10M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66665 Gb [spades] 0:00:00.009 9M / 10M INFO General (kmer_splitters.hpp : 97) Using cell size of 18641 [spades] 0:00:02.410 21G / 21G INFO General (kmer_splitters.hpp : 287) Processed 4648524 reads [spades] 0:00:02.754 376M / 5G INFO General (kmer_splitters.hpp : 293) Used 4648524 reads [spades] 0:00:02.755 376M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:03.277 380M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 13309045 kmers in total. [spades] 0:00:03.281 380M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:03.687 376M / 5G INFO General (stage.cpp : 113) PROCEDURE == Extension index construction [spades] 0:00:03.688 376M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:03.688 376M / 5G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:03.689 376M / 5G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:03.689 376M / 5G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66662 Gb [spades] 0:00:03.690 376M / 5G INFO General (kmer_splitters.hpp : 97) Using cell size of 34952 [spades] 0:00:04.632 18G / 18G INFO General (kmer_splitters.hpp : 364) Processed 13309045 kmers [spades] 0:00:04.633 18G / 18G INFO General (kmer_splitters.hpp : 369) Used 13309045 kmers. [spades] 0:00:04.760 403M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:05.045 403M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 13367614 kmers in total. [spades] 0:00:05.046 403M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:05.430 403M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:05.787 393M / 5G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:06.448 393M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6206520 bytes occupied (3.71436 bits per kmer). [spades] 0:00:06.468 407M / 5G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 99) Building k-mer extensions from k+1-mers [spades] 0:00:06.919 407M / 5G INFO DeBruijnExtensionIndexBu (kmer_extension_index_build: 103) Building k-mer extensions from k+1-mers finished. [spades] 0:00:06.924 370M / 5G INFO General (stage.cpp : 113) PROCEDURE == Condensing graph [spades] 0:00:06.929 370M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 354) Extracting unbranching paths [spades] 0:00:07.530 285M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 373) Extracting unbranching paths finished. 226225 sequences extracted [spades] 0:00:07.919 285M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 309) Collecting perfect loops [spades] 0:00:08.053 285M / 5G INFO UnbranchingPathExtractor (debruijn_graph_constructor: 342) Collecting perfect loops finished. 0 loops collected [spades] 0:00:09.157 252M / 5G INFO General (stage.cpp : 113) PROCEDURE == Filling coverage indices (PHM) [spades] 0:00:09.158 252M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:09.159 252M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:09.382 256M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6186944 bytes occupied (3.71894 bits per kmer). [spades] 0:00:09.417 312M / 5G INFO General (construction.cpp : 429) Collecting k-mer coverage information from reads, this takes a while. [spades] 0:00:11.666 306M / 5G INFO General (construction.cpp : 549) Filling coverage and flanking coverage from PHM [spades] 0:00:12.110 306M / 5G INFO General (construction.cpp : 505) Processed 452450 edges [spades] 0:00:12.207 235M / 5G INFO StageManager (stage.cpp : 166) STAGE == EC Threshold Finding [spades] 0:00:12.208 235M / 5G INFO General (kmer_coverage_model.cpp : 181) Kmer coverage valley at: 109 [spades] 0:00:12.209 235M / 5G INFO General (kmer_coverage_model.cpp : 201) K-mer histogram maximum: 113 [spades] 0:00:12.210 235M / 5G INFO General (kmer_coverage_model.cpp : 237) Estimated median coverage: 114. Coverage mad: 4.4478 [spades] 0:00:12.211 235M / 5G INFO General (kmer_coverage_model.cpp : 259) Fitting coverage model [spades] 0:00:12.267 235M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 2 [spades] 0:00:12.382 235M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 4 [spades] 0:00:12.713 235M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 8 [spades] 0:00:13.694 235M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 16 [spades] 0:00:15.073 235M / 5G INFO General (kmer_coverage_model.cpp : 295) ... iteration 32 [spades] 0:00:15.753 235M / 5G INFO General (kmer_coverage_model.cpp : 309) Fitted mean coverage: 27.3012. Fitted coverage std. dev: 13.0713 [spades] 0:00:15.754 235M / 5G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 5 [spades] 0:00:15.757 235M / 5G INFO General (kmer_coverage_model.cpp : 334) Probability of erroneous kmer at valley: 1 [spades] 0:00:15.757 235M / 5G WARN General (kmer_coverage_model.cpp : 366) Failed to determine erroneous kmer threshold. Threshold set to: 5 [spades] 0:00:15.758 235M / 5G INFO General (kmer_coverage_model.cpp : 375) Estimated genome size (ignoring repeats): 5515694 [spades] 0:00:15.759 235M / 5G INFO General (genomic_info_filler.cpp : 55) Failed to estimate mean coverage [spades] 0:00:15.759 235M / 5G INFO General (genomic_info_filler.cpp : 68) EC coverage threshold value was calculated as 5 [spades] 0:00:15.760 235M / 5G INFO General (genomic_info_filler.cpp : 69) Trusted kmer low bound: 0 [spades] 0:00:15.761 235M / 5G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:15.761 235M / 5G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:15.762 235M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:15.762 235M / 5G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:15.765 176M / 5G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:15.766 176M / 5G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.66583 Gb [spades] 0:00:15.767 176M / 5G INFO General (kmer_splitters.hpp : 97) Using cell size of 34952 [spades] 0:00:16.312 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 452450 edges [spades] 0:00:16.315 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 452450 sequences. [spades] 0:00:16.397 201M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:16.705 199M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 13309045 kmers in total. [spades] 0:00:16.707 199M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:17.085 199M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:17.456 191M / 5G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:18.071 191M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 6179360 bytes occupied (3.71438 bits per kmer). [spades] 0:00:18.193 415M / 5G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:18.459 415M / 5G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:18.461 415M / 5G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:18.829 440M / 5G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:19.187 405M / 5G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:19.189 405M / 5G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:19.279 406M / 5G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:19.610 409M / 5G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 377 gaps after checking 2945 candidates [spades] 0:00:19.737 408M / 5G INFO StageManager (stage.cpp : 166) STAGE == Raw Simplification [spades] 0:00:19.747 184M / 5G INFO General (simplification.cpp : 128) PROCEDURE == InitialCleaning [spades] 0:00:19.748 184M / 5G INFO General (simplification.cpp : 63) Most init cleaning disabled on main iteration [spades] 0:00:19.749 184M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Self conjugate edge remover [spades] 0:00:19.764 184M / 5G INFO Simplification (parallel_processing.hpp : 167) Self conjugate edge remover triggered 0 times [spades] 0:00:19.765 184M / 5G INFO StageManager (stage.cpp : 166) STAGE == Simplification [spades] 0:00:19.766 184M / 5G INFO General (simplification.cpp : 383) Graph simplification started [spades] 0:00:19.767 184M / 5G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:19.768 184M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 1 [spades] 0:00:19.768 184M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:20.480 183M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 61285 times [spades] 0:00:20.481 183M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.484 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 2295 times [spades] 0:00:21.485 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.503 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 46 times [spades] 0:00:21.504 216M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 2 [spades] 0:00:21.505 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:21.510 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 97 times [spades] 0:00:21.511 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.515 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 5 times [spades] 0:00:21.516 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.532 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 628 times [spades] 0:00:21.533 216M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 3 [spades] 0:00:21.533 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:21.536 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 89 times [spades] 0:00:21.536 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.562 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 42 times [spades] 0:00:21.563 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.572 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 372 times [spades] 0:00:21.573 216M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 4 [spades] 0:00:21.573 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:21.575 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 34 times [spades] 0:00:21.575 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.590 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 22 times [spades] 0:00:21.590 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.601 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 467 times [spades] 0:00:21.602 216M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 5 [spades] 0:00:21.602 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:21.604 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 39 times [spades] 0:00:21.605 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.619 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 21 times [spades] 0:00:21.620 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.627 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 296 times [spades] 0:00:21.628 217M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 6 [spades] 0:00:21.628 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:21.630 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 31 times [spades] 0:00:21.630 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.642 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 18 times [spades] 0:00:21.643 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.649 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 236 times [spades] 0:00:21.649 216M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 7 [spades] 0:00:21.650 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:21.651 216M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 18 times [spades] 0:00:21.652 216M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.659 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 11 times [spades] 0:00:21.660 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.663 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 146 times [spades] 0:00:21.664 217M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 8 [spades] 0:00:21.665 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:21.665 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 7 times [spades] 0:00:21.666 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.671 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 6 times [spades] 0:00:21.671 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.675 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 146 times [spades] 0:00:21.676 217M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 9 [spades] 0:00:21.676 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:21.677 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 6 times [spades] 0:00:21.678 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.685 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 9 times [spades] 0:00:21.685 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.689 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 124 times [spades] 0:00:21.689 217M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 10 [spades] 0:00:21.690 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:21.691 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 1 times [spades] 0:00:21.691 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.694 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 3 times [spades] 0:00:21.694 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.698 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 123 times [spades] 0:00:21.698 217M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 11 [spades] 0:00:21.699 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:21.714 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 46 times [spades] 0:00:21.715 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.758 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 2 times [spades] 0:00:21.759 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.773 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:21.774 217M / 5G INFO General (simplification.cpp : 388) PROCEDURE == Simplification cycle, iteration 12 [spades] 0:00:21.775 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:21.776 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:21.777 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:21.777 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:21.778 217M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Low coverage edge remover [spades] 0:00:21.779 217M / 5G INFO Simplification (parallel_processing.hpp : 167) Low coverage edge remover triggered 0 times [spades] 0:00:21.789 217M / 5G INFO StageManager (stage.cpp : 166) STAGE == Gap Closer [spades] 0:00:21.790 217M / 5G INFO General (graph_pack.hpp : 105) Index refill [spades] 0:00:21.791 217M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index [spades] 0:00:21.792 217M / 5G INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 480 files using 30 threads. This might take a while. [spades] 0:00:21.793 217M / 5G INFO General (file_limit.hpp : 32) Open file limit set to 10000 [spades] 0:00:21.795 217M / 5G INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.6651 Gb [spades] 0:00:21.796 217M / 5G INFO General (kmer_splitters.hpp : 97) Using cell size of 34952 [spades] 0:00:22.212 18G / 18G INFO General (edge_index_builders.hpp : 77) Processed 177180 edges [spades] 0:00:22.213 18G / 18G INFO General (edge_index_builders.hpp : 82) Used 177180 sequences. [spades] 0:00:22.283 269M / 5G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting. [spades] 0:00:22.577 269M / 5G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 10136575 kmers in total. [spades] 0:00:22.579 269M / 5G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets. [spades] 0:00:22.879 269M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices [spades] 0:00:23.157 260M / 5G INFO General (kmer_index_builder.hpp : 150) Merging final buckets. [spades] 0:00:23.682 260M / 5G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 4708456 bytes occupied (3.71601 bits per kmer). [spades] 0:00:23.842 420M / 5G INFO General (edge_index_builders.hpp : 107) Collecting edge information from graph, this takes a while. [spades] 0:00:24.045 420M / 5G INFO General (edge_index.hpp : 92) Index refilled [spades] 0:00:24.047 420M / 5G INFO General (gap_closer.cpp : 147) Preparing shift maps [spades] 0:00:24.271 427M / 5G INFO General (gap_closer.cpp : 107) Processing paired reads (takes a while) [spades] 0:00:24.808 413M / 5G INFO General (gap_closer.cpp : 126) Used 805835 paired reads [spades] 0:00:24.809 413M / 5G INFO General (gap_closer.cpp : 128) Merging paired indices [spades] 0:00:24.920 415M / 5G INFO GapCloser (gap_closer.cpp : 332) Closing short gaps [spades] 0:00:25.132 407M / 5G INFO GapCloser (gap_closer.cpp : 366) Closing short gaps complete: filled 45 gaps after checking 2917 candidates [spades] 0:00:25.181 407M / 5G INFO StageManager (stage.cpp : 166) STAGE == Simplification Cleanup [spades] 0:00:25.182 407M / 5G INFO General (simplification.cpp : 196) PROCEDURE == Post simplification [spades] 0:00:25.183 407M / 5G INFO General (graph_simplification.hpp : 456) Disconnection of relatively low covered edges disabled [spades] 0:00:25.184 407M / 5G INFO General (graph_simplification.hpp : 493) Complex tip clipping disabled [spades] 0:00:25.184 407M / 5G INFO General (graph_simplification.hpp : 643) Creating parallel br instance [spades] 0:00:25.185 407M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.205 407M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 3 times [spades] 0:00:25.207 407M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.248 407M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:25.250 407M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Tip clipper [spades] 0:00:25.264 407M / 5G INFO Simplification (parallel_processing.hpp : 167) Tip clipper triggered 0 times [spades] 0:00:25.265 407M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Bulge remover [spades] 0:00:25.305 407M / 5G INFO Simplification (parallel_processing.hpp : 167) Bulge remover triggered 0 times [spades] 0:00:25.306 407M / 5G INFO General (simplification.cpp : 343) Disrupting self-conjugate edges [spades] 0:00:25.379 407M / 5G INFO Simplification (parallel_processing.hpp : 165) Running Removing isolated edges [spades] 0:00:27.472 394M / 5G INFO Simplification (parallel_processing.hpp : 167) Removing isolated edges triggered 65964 times [spades] 0:00:27.474 394M / 5G INFO General (simplification.cpp : 496) Counting average coverage [spades] 0:00:27.493 394M / 5G INFO General (simplification.cpp : 502) Average coverage = 16.0957 [spades] 0:00:27.494 394M / 5G INFO StageManager (stage.cpp : 166) STAGE == Mismatch Correction [spades] 0:00:27.494 394M / 5G INFO General (graph_pack.hpp : 113) Normalizing k-mer map. Total 718882 kmers to process [spades] 0:00:27.667 400M / 5G INFO General (graph_pack.hpp : 115) Normalizing done [spades] 0:00:32.213 435M / 5G INFO General (mismatch_shall_not_pass.hp: 195) Finished collecting potential mismatches positions [spades] 0:00:32.295 435M / 5G INFO General (mismatch_shall_not_pass.hp: 310) All edges processed [spades] 0:00:32.298 435M / 5G INFO General (mismatch_correction.cpp : 27) Corrected 0 nucleotides [spades] 0:00:32.299 435M / 5G INFO StageManager (stage.cpp : 166) STAGE == Contig Output [spades] 0:00:32.300 435M / 5G INFO General (contig_output.hpp : 21) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/before_rr.fasta [spades] 0:00:32.472 384M / 5G INFO General (contig_output_stage.cpp : 146) Writing GFA graph to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/assembly_graph_after_simplification.gfa [spades] 0:00:32.616 384M / 5G INFO StageManager (stage.cpp : 166) STAGE == Paired Information Counting [spades] 0:00:32.691 387M / 5G INFO General (graph_pack.hpp : 113) Normalizing k-mer map. Total 718882 kmers to process [spades] 0:00:32.692 387M / 5G INFO General (graph_pack.hpp : 115) Normalizing done [spades] 0:00:32.704 387M / 5G INFO General (pair_info_count.cpp : 322) Min edge length for estimation: 543 [spades] 0:00:32.705 387M / 5G INFO General (pair_info_count.cpp : 333) Estimating insert size for library #0 [spades] 0:00:32.706 387M / 5G INFO General (pair_info_count.cpp : 190) Estimating insert size (takes a while) [spades] 0:00:32.975 883M / 5G INFO General (pair_info_count.cpp : 39) Selecting usual mapper [spades] 0:00:34.623 877M / 5G INFO General (sequence_mapper_notifier.h: 94) Total 1499563 reads processed [spades] 0:00:34.711 877M / 5G INFO General (pair_info_count.cpp : 208) Edge pairs: 125297 [spades] 0:00:34.712 877M / 5G INFO General (pair_info_count.cpp : 212) 451274 paired reads (30.0937% of all) aligned to long edges [spades] 0:00:34.734 381M / 5G INFO General (pair_info_count.cpp : 356) Insert size = 283.381, deviation = 53.4794, left quantile = 218, right quantile = 352, read length = 150 [spades] 0:00:34.735 381M / 5G INFO General (pair_info_count.cpp : 373) Filtering data for library #0 [spades] 0:00:34.736 381M / 5G INFO General (pair_info_count.cpp : 39) Selecting usual mapper [spades] 0:00:35.764 381M / 5G INFO General (sequence_mapper_notifier.h: 94) Total 1499563 reads processed [spades] 0:00:35.765 381M / 5G INFO General (pair_info_count.cpp : 385) Mapping library #0 [spades] 0:00:35.766 381M / 5G INFO General (pair_info_count.cpp : 387) Mapping paired reads (takes a while) [spades] 0:00:35.767 381M / 5G INFO General (pair_info_count.cpp : 288) Left insert size quantile 218, right insert size quantile 352, filtering threshold 2, rounding threshold 0 [spades] 0:00:35.778 390M / 5G INFO General (pair_info_count.cpp : 39) Selecting usual mapper [spades] 0:00:36.904 401M / 5G INFO General (sequence_mapper_notifier.h: 94) Total 1499563 reads processed [spades] 0:00:36.921 402M / 5G INFO StageManager (stage.cpp : 166) STAGE == Distance Estimation [spades] 0:00:36.922 402M / 5G INFO General (distance_estimation.cpp : 174) Processing library #0 [spades] 0:00:36.924 402M / 5G INFO General (distance_estimation.cpp : 150) Weight Filter Done [spades] 0:00:36.925 402M / 5G INFO DistanceEstimator (distance_estimation.hpp : 116) Using SIMPLE distance estimator [spades] 0:00:37.067 411M / 5G INFO General (distance_estimation.cpp : 35) Filtering info [spades] 0:00:37.068 411M / 5G INFO General (pair_info_filters.hpp : 242) Start filtering; index size: 119090 [spades] 0:00:37.120 411M / 5G INFO General (pair_info_filters.hpp : 263) Done filtering [spades] 0:00:37.121 411M / 5G INFO General (distance_estimation.cpp : 157) Refining clustered pair information [spades] 0:00:37.161 411M / 5G INFO General (distance_estimation.cpp : 159) The refining of clustered pair information has been finished [spades] 0:00:37.162 411M / 5G INFO General (distance_estimation.cpp : 161) Improving paired information [spades] 0:00:37.341 412M / 5G INFO PairInfoImprover (pair_info_improver.hpp : 103) Paired info stats: missing = 1225; contradictional = 0 [spades] 0:00:37.516 412M / 5G INFO PairInfoImprover (pair_info_improver.hpp : 103) Paired info stats: missing = 8; contradictional = 0 [spades] 0:00:37.517 412M / 5G INFO General (distance_estimation.cpp : 104) Filling scaffolding index [spades] 0:00:37.519 412M / 5G INFO DistanceEstimator (distance_estimation.hpp : 116) Using SMOOTHING distance estimator [spades] 0:00:37.570 416M / 5G INFO General (distance_estimation.cpp : 35) Filtering info [spades] 0:00:37.571 416M / 5G INFO General (pair_info_filters.hpp : 242) Start filtering; index size: 46330 [spades] 0:00:37.598 416M / 5G INFO General (pair_info_filters.hpp : 263) Done filtering [spades] 0:00:37.599 416M / 5G INFO General (distance_estimation.cpp : 183) Clearing raw paired index [spades] 0:00:37.632 416M / 5G INFO StageManager (stage.cpp : 166) STAGE == Repeat Resolving [spades] 0:00:37.633 416M / 5G INFO General (repeat_resolving.cpp : 69) Using Path-Extend repeat resolving [spades] 0:00:37.634 416M / 5G INFO General (launcher.cpp : 538) ExSPAnder repeat resolving tool started [spades] 0:00:37.779 501M / 5G INFO General (launcher.cpp : 404) Creating main extenders, unique edge length = 2000 [spades] 0:00:37.780 501M / 5G INFO General (extenders_logic.cpp : 311) Estimated coverage of library #0 is 16.0957 [spades] 0:00:37.786 501M / 5G INFO General (extenders_logic.cpp : 311) Estimated coverage of library #0 is 16.0957 [spades] 0:00:37.808 502M / 5G INFO General (extenders_logic.cpp : 519) Using 1 paired-end library [spades] 0:00:37.810 502M / 5G INFO General (extenders_logic.cpp : 520) Using 1 paired-end scaffolding library [spades] 0:00:37.810 502M / 5G INFO General (extenders_logic.cpp : 521) Using 0 single read libraries [spades] 0:00:37.811 502M / 5G INFO General (launcher.cpp : 432) Total number of extenders is 3 [spades] 0:00:37.812 502M / 5G INFO General (path_extender.hpp : 894) Processed 0 paths from 22567 (0%) [spades] 0:00:37.827 503M / 5G INFO General (path_extender.hpp : 892) Processed 128 paths from 22567 (0%) [spades] 0:00:37.841 504M / 5G INFO General (path_extender.hpp : 892) Processed 256 paths from 22567 (1%) [spades] 0:00:37.869 506M / 5G INFO General (path_extender.hpp : 892) Processed 512 paths from 22567 (2%) [spades] 0:00:37.931 510M / 5G INFO General (path_extender.hpp : 892) Processed 1024 paths from 22567 (4%) [spades] 0:00:38.054 519M / 5G INFO General (path_extender.hpp : 892) Processed 2048 paths from 22567 (9%) [spades] 0:00:38.082 521M / 5G INFO General (path_extender.hpp : 894) Processed 2257 paths from 22567 (10%) [spades] 0:00:38.427 537M / 5G INFO General (path_extender.hpp : 892) Processed 4096 paths from 22567 (18%) [spades] 0:00:38.514 541M / 5G INFO General (path_extender.hpp : 894) Processed 4514 paths from 22567 (20%) [spades] 0:00:39.077 563M / 5G INFO General (path_extender.hpp : 894) Processed 6771 paths from 22567 (30%) [spades] 0:00:39.487 576M / 5G INFO General (path_extender.hpp : 892) Processed 8192 paths from 22567 (36%) [spades] 0:00:39.753 583M / 5G INFO General (path_extender.hpp : 894) Processed 9028 paths from 22567 (40%) [spades] 0:00:40.404 596M / 5G INFO General (path_extender.hpp : 894) Processed 11285 paths from 22567 (50%) [spades] 0:00:40.892 610M / 5G INFO General (path_extender.hpp : 894) Processed 13542 paths from 22567 (60%) [spades] 0:00:41.329 623M / 5G INFO General (path_extender.hpp : 894) Processed 15799 paths from 22567 (70%) [spades] 0:00:41.420 626M / 5G INFO General (path_extender.hpp : 892) Processed 16384 paths from 22567 (72%) [spades] 0:00:41.612 635M / 5G INFO General (path_extender.hpp : 894) Processed 18056 paths from 22567 (80%) [spades] 0:00:41.800 643M / 5G INFO General (path_extender.hpp : 894) Processed 20313 paths from 22567 (90%) [spades] 0:00:41.846 645M / 5G INFO General (launcher.cpp : 244) Finalizing paths [spades] 0:00:41.847 645M / 5G INFO General (launcher.cpp : 246) Deduplicating paths [spades] 0:00:41.927 645M / 5G INFO General (launcher.cpp : 250) Paths deduplicated [spades] 0:00:41.928 645M / 5G INFO PEResolver (pe_resolver.hpp : 295) Removing overlaps [spades] 0:00:41.929 645M / 5G INFO PEResolver (pe_resolver.hpp : 298) Sorting paths [spades] 0:00:41.935 645M / 5G INFO PEResolver (pe_resolver.hpp : 305) Marking overlaps [spades] 0:00:41.935 645M / 5G INFO OverlapRemover (pe_resolver.hpp : 130) Marking start/end overlaps [spades] 0:00:41.970 645M / 5G INFO OverlapRemover (pe_resolver.hpp : 133) Marking remaining overlaps [spades] 0:00:42.002 645M / 5G INFO PEResolver (pe_resolver.hpp : 308) Splitting paths [spades] 0:00:42.036 645M / 5G INFO PEResolver (pe_resolver.hpp : 313) Deduplicating paths [spades] 0:00:42.062 645M / 5G INFO PEResolver (pe_resolver.hpp : 315) Overlaps removed [spades] 0:00:42.118 645M / 5G INFO General (launcher.cpp : 267) Paths finalized [spades] 0:00:42.119 645M / 5G INFO General (launcher.cpp : 439) Closing gaps in paths [spades] 0:00:42.199 648M / 5G INFO General (launcher.cpp : 467) Gap closing completed [spades] 0:00:42.223 649M / 5G INFO General (launcher.cpp : 296) Traversing tandem repeats [spades] 0:00:42.299 651M / 5G INFO General (launcher.cpp : 306) Traversed 116 loops [spades] 0:00:42.300 651M / 5G INFO General (launcher.cpp : 244) Finalizing paths [spades] 0:00:42.301 651M / 5G INFO General (launcher.cpp : 246) Deduplicating paths [spades] 0:00:42.314 651M / 5G INFO General (launcher.cpp : 250) Paths deduplicated [spades] 0:00:42.314 651M / 5G INFO PEResolver (pe_resolver.hpp : 295) Removing overlaps [spades] 0:00:42.315 651M / 5G INFO PEResolver (pe_resolver.hpp : 298) Sorting paths [spades] 0:00:42.323 651M / 5G INFO PEResolver (pe_resolver.hpp : 305) Marking overlaps [spades] 0:00:42.324 651M / 5G INFO OverlapRemover (pe_resolver.hpp : 130) Marking start/end overlaps [spades] 0:00:42.350 651M / 5G INFO OverlapRemover (pe_resolver.hpp : 133) Marking remaining overlaps [spades] 0:00:42.377 651M / 5G INFO PEResolver (pe_resolver.hpp : 308) Splitting paths [spades] 0:00:42.379 651M / 5G INFO PEResolver (pe_resolver.hpp : 313) Deduplicating paths [spades] 0:00:42.391 651M / 5G INFO PEResolver (pe_resolver.hpp : 315) Overlaps removed [spades] 0:00:42.418 651M / 5G INFO General (launcher.cpp : 267) Paths finalized [spades] 0:00:42.419 651M / 5G INFO General (launcher.cpp : 596) ExSPAnder repeat resolving tool finished [spades] 0:00:42.525 651M / 5G INFO StageManager (stage.cpp : 166) STAGE == Contig Output [spades] 0:00:42.526 651M / 5G INFO General (contig_output.hpp : 21) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/before_rr.fasta [spades] 0:00:42.704 651M / 5G INFO General (contig_output_stage.cpp : 146) Writing GFA graph to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/assembly_graph_with_scaffolds.gfa [spades] 0:00:42.848 651M / 5G INFO General (contig_output_stage.cpp : 160) Outputting FastG graph to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/assembly_graph.fastg [spades] 0:00:43.398 649M / 5G INFO General (contig_output_stage.cpp : 190) Breaking scaffolds [spades] 0:00:43.599 649M / 5G INFO General (contig_output_stage.cpp : 95) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/final_contigs.fasta [spades] 0:00:43.698 649M / 5G INFO General (contig_output_stage.cpp : 101) Outputting FastG paths to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/final_contigs.paths [spades] 0:00:43.866 649M / 5G INFO General (contig_output_stage.cpp : 95) Outputting contigs to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/scaffolds.fasta [spades] 0:00:43.963 649M / 5G INFO General (contig_output_stage.cpp : 101) Outputting FastG paths to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/scaffolds.paths [spades] 0:00:43.992 649M / 5G INFO General (contig_output_stage.cpp : 108) Populating GFA with scaffold paths [spades] 0:00:44.013 649M / 5G INFO General (pipeline.cpp : 259) SPAdes finished [spades] 0:00:44.231 462M / 5G INFO General (main.cpp : 107) Assembling time: 0 hours 0 minutes 44 seconds [spades] [spades] ===== K121 finished. [spades] [spades] [spades] ===== Copy files started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/python /home/administrator/conda2/envs/shovill/share/spades/spades_pipeline/scripts/copy_files.py /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/before_rr.fasta /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/before_rr.fasta /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/assembly_graph_after_simplification.gfa /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/assembly_graph_after_simplification.gfa /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/final_contigs.fasta /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/contigs.fasta /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/first_pe_contigs.fasta /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/first_pe_contigs.fasta /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/strain_graph.gfa /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/strain_graph.gfa /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/scaffolds.fasta /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/scaffolds.fasta /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/scaffolds.paths /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/scaffolds.paths /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/assembly_graph_with_scaffolds.gfa /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/assembly_graph_with_scaffolds.gfa /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/assembly_graph.fastg /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/assembly_graph.fastg /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/K121/final_contigs.paths /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/contigs.paths [spades] [spades] [spades] ===== Copy files finished. [spades] [spades] [spades] ===== Assembling finished. [spades] [spades] [spades] ===== Breaking scaffolds started. [spades] [spades] [spades] == Running: /home/administrator/conda2/envs/shovill/bin/python /home/administrator/conda2/envs/shovill/share/spades/spades_pipeline/scripts/breaking_scaffolds_script.py --result_scaffolds_filename /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/scaffolds.fasta --misc_dir /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/misc --threshold_for_breaking_scaffolds 3 [spades] [spades] [spades] ===== Breaking scaffolds finished. [spades] [spades] [spades] ===== Terminate started. [spades] [spades] [spades] ===== Terminate finished. [spades] [spades] * Assembled contigs are in /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/contigs.fasta [spades] * Assembled scaffolds are in /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/scaffolds.fasta [spades] * Paths in the assembly graph corresponding to the contigs are in /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/contigs.paths [spades] * Paths in the assembly graph corresponding to the scaffolds are in /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/scaffolds.paths [spades] * Assembly graph is in /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/assembly_graph.fastg [spades] * Assembly graph in GFA format is in /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/assembly_graph_with_scaffolds.gfa [spades] [spades] ======= SPAdes pipeline finished WITH WARNINGS! [spades] [spades] === Error correction and assembling warnings: [spades] * 0:00:24.990 225M / 3G WARN General (kmer_coverage_model.cpp : 218) Too many erroneous kmers, the estimates might be unreliable [spades] * 0:00:26.799 170M / 3G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 2 [spades] * 0:00:18.169 152M / 6G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 3 [spades] * 0:00:20.421 183M / 5G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 25 [spades] * 0:00:20.425 183M / 5G WARN General (kmer_coverage_model.cpp : 366) Failed to determine erroneous kmer threshold. Threshold set to: 25 [spades] * 0:00:18.172 174M / 5G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 17 [spades] * 0:00:18.175 174M / 5G WARN General (kmer_coverage_model.cpp : 366) Failed to determine erroneous kmer threshold. Threshold set to: 17 [spades] * 0:00:16.938 172M / 6G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 15 [spades] * 0:00:16.941 172M / 6G WARN General (kmer_coverage_model.cpp : 366) Failed to determine erroneous kmer threshold. Threshold set to: 15 [spades] * 0:00:15.754 235M / 5G WARN General (kmer_coverage_model.cpp : 327) Valley value was estimated improperly, reset to 5 [spades] * 0:00:15.757 235M / 5G WARN General (kmer_coverage_model.cpp : 366) Failed to determine erroneous kmer threshold. Threshold set to: 5 [spades] ======= Warnings saved to /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/warnings.log [spades] [spades] SPAdes log can be found here: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/spades/spades.log [spades] [spades] Thank you for using SPAdes! [shovill] Checking for assembly errors in spades.fasta [shovill] Running: bwa index spades.fasta 2>&1 | sed 's/^/[bwa-index] /' | tee -a shovill.log [bwa-index] [bwa_index] Pack FASTA... 0.11 sec [bwa-index] [bwa_index] Construct BWT for the packed sequence... [bwa-index] [bwa_index] 3.57 seconds elapse. [bwa-index] [bwa_index] Update BWT... 0.07 sec [bwa-index] [bwa_index] Pack forward-only FASTA... 0.09 sec [bwa-index] [bwa_index] Construct SA from BWT and Occ... 1.22 sec [bwa-index] [main] Version: 0.7.17-r1188 [bwa-index] [main] CMD: bwa index spades.fasta [bwa-index] [main] Real time: 5.543 sec; CPU: 5.057 sec [shovill] Running: samtools faidx spades.fasta 2>&1 | sed 's/^/[faidx] /' | tee -a shovill.log [shovill] Running: (bwa mem -v 3 -x intractg -t 30 spades.fasta R1.fq.gz R2.fq.gz | samclip --ref spades.fasta.fai | samtools sort --threads 7 -m 17554m --reference spades.fasta -T /tmp/q8rxSp2QI6 -o shovill.bam) 2>&1 | sed 's/^/[bwa+samtools-sort] /' | tee -a shovill.log [bwa+samtools-sort] [M::bwa_idx_load_from_disk] read 0 ALT contigs [bwa+samtools-sort] [samclip] samclip 0.4.0 by Torsten Seemann (@torstenseemann) [bwa+samtools-sort] [samclip] Loading: spades.fasta.fai [bwa+samtools-sort] [samclip] Found 15269 sequences in spades.fasta.fai [bwa+samtools-sort] [M::process] read 2000000 sequences (300000000 bp)... [bwa+samtools-sort] [M::process] read 999126 sequences (149868900 bp)... [bwa+samtools-sort] [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (0, 421920, 2, 3) [bwa+samtools-sort] [M::mem_pestat] skip orientation FF as there are not enough pairs [bwa+samtools-sort] [M::mem_pestat] analyzing insert size distribution for orientation FR... [bwa+samtools-sort] [M::mem_pestat] (25, 50, 75) percentile: (240, 273, 308) [bwa+samtools-sort] [M::mem_pestat] low and high boundaries for computing mean and std.dev: (104, 444) [bwa+samtools-sort] [M::mem_pestat] mean and std.dev: (275.15, 51.28) [bwa+samtools-sort] [M::mem_pestat] low and high boundaries for proper pairs: (36, 512) [bwa+samtools-sort] [M::mem_pestat] skip orientation RF as there are not enough pairs [bwa+samtools-sort] [M::mem_pestat] skip orientation RR as there are not enough pairs [bwa+samtools-sort] [M::mem_process_seqs] Processed 2000000 reads in 378.261 CPU sec, 18.640 real sec [bwa+samtools-sort] [samclip] Processed 100000 records... [bwa+samtools-sort] [samclip] Processed 200000 records... [bwa+samtools-sort] [samclip] Processed 300000 records... [bwa+samtools-sort] [samclip] Processed 400000 records... [bwa+samtools-sort] [samclip] Processed 500000 records... [bwa+samtools-sort] [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (0, 218511, 0, 0) [bwa+samtools-sort] [M::mem_pestat] skip orientation FF as there are not enough pairs [bwa+samtools-sort] [M::mem_pestat] analyzing insert size distribution for orientation FR... [bwa+samtools-sort] [M::mem_pestat] (25, 50, 75) percentile: (251, 287, 324) [bwa+samtools-sort] [M::mem_pestat] low and high boundaries for computing mean and std.dev: (105, 470) [bwa+samtools-sort] [M::mem_pestat] mean and std.dev: (288.31, 55.43) [bwa+samtools-sort] [M::mem_pestat] low and high boundaries for proper pairs: (32, 543) [bwa+samtools-sort] [M::mem_pestat] skip orientation RF as there are not enough pairs [bwa+samtools-sort] [M::mem_pestat] skip orientation RR as there are not enough pairs [bwa+samtools-sort] [M::mem_process_seqs] Processed 999126 reads in 180.601 CPU sec, 7.628 real sec [bwa+samtools-sort] [samclip] Processed 600000 records... [bwa+samtools-sort] [samclip] Processed 700000 records... [bwa+samtools-sort] [samclip] Processed 800000 records... [bwa+samtools-sort] [samclip] Processed 900000 records... [bwa+samtools-sort] [samclip] Processed 1000000 records... [bwa+samtools-sort] [samclip] Processed 1100000 records... [bwa+samtools-sort] [samclip] Processed 1200000 records... [bwa+samtools-sort] [samclip] Processed 1300000 records... [bwa+samtools-sort] [samclip] Processed 1400000 records... [bwa+samtools-sort] [samclip] Processed 1500000 records... [bwa+samtools-sort] [samclip] Processed 1600000 records... [bwa+samtools-sort] [samclip] Processed 1700000 records... [bwa+samtools-sort] [samclip] Processed 1800000 records... [bwa+samtools-sort] [samclip] Processed 1900000 records... [bwa+samtools-sort] [samclip] Processed 2000000 records... [bwa+samtools-sort] [samclip] Processed 2100000 records... [bwa+samtools-sort] [samclip] Processed 2200000 records... [bwa+samtools-sort] [samclip] Processed 2300000 records... [bwa+samtools-sort] [samclip] Processed 2400000 records... [bwa+samtools-sort] [samclip] Processed 2500000 records... [bwa+samtools-sort] [samclip] Processed 2600000 records... [bwa+samtools-sort] [samclip] Processed 2700000 records... [bwa+samtools-sort] [samclip] Processed 2800000 records... [bwa+samtools-sort] [samclip] Processed 2900000 records... [bwa+samtools-sort] [samclip] Processed 3000000 records... [bwa+samtools-sort] [samclip] Total SAM records 3001838, removed 85105, allowed 255955, passed 2916733 [bwa+samtools-sort] [samclip] Header contained 15270 lines [bwa+samtools-sort] [samclip] Done. [bwa+samtools-sort] [main] Version: 0.7.17-r1188 [bwa+samtools-sort] [main] CMD: bwa mem -v 3 -x intractg -t 30 spades.fasta R1.fq.gz R2.fq.gz [bwa+samtools-sort] [main] Real time: 39.722 sec; CPU: 568.604 sec [bwa+samtools-sort] [bam_sort_core] merging from 0 files and 7 in-memory blocks... [shovill] Running: samtools index shovill.bam 2>&1 | sed 's/^/[samtools-index] /' | tee -a shovill.log [shovill] Correcting errors in spades.fasta [shovill] Running: pilon --genome spades.fasta --frags shovill.bam --minmq 60 --minqual 3 --fix bases --output pilon --threads 30 --changes --mindepth 0.25 2>&1 | sed 's/^/[pilon] /' | tee -a shovill.log [pilon] Picked up _JAVA_OPTIONS: -Xmx240g [pilon] Pilon version 1.23 Mon Nov 26 16:04:05 2018 -0500 [pilon] Genome: spades.fasta [pilon] Fixing snps, indels [pilon] Input genome size: 9480508 [pilon] Processing NODE_3612_length_767_cov_7.246130:1-767 [pilon] Processing NODE_9286_length_354_cov_19.386266:1-354 [pilon] Processing NODE_1683_length_1189_cov_8.014981:1-1189 [pilon] Processing NODE_9060_length_363_cov_25.185950:1-363 [pilon] Processing NODE_7829_length_426_cov_8.295082:1-426 [pilon] Processing NODE_12235_length_243_cov_35.163934:1-243 [pilon] Processing NODE_4742_length_640_cov_0.641618:1-640 [pilon] Processing NODE_7428_length_447_cov_2.355828:1-447 [pilon] Processing NODE_228_length_2412_cov_16.491925:1-2412 [pilon] Processing NODE_468_length_1949_cov_20.439825:1-1949 [pilon] Processing NODE_11056_length_281_cov_19.762500:1-281 [pilon] Processing NODE_2341_length_1002_cov_23.875142:1-1002 [pilon] Processing NODE_13730_length_243_cov_16.180328:1-243 [pilon] Processing NODE_659_length_1739_cov_24.737948:1-1739 [pilon] Processing NODE_6341_length_514_cov_19.231552:1-514 [pilon] Processing NODE_1129_length_1425_cov_27.993098:1-1425 [pilon] Processing NODE_7378_length_450_cov_0.583587:1-450 [pilon] Processing NODE_5083_length_611_cov_33.265306:1-611 [pilon] Processing NODE_10037_length_324_cov_14.330049:1-324 [pilon] Processing NODE_2076_length_1065_cov_49.500000:1-1065 [pilon] Processing NODE_10380_length_309_cov_25.388298:1-309 [pilon] Processing NODE_3443_length_792_cov_21.959762:1-792 [pilon] Processing NODE_3030_length_868_cov_1.136546:1-868 [pilon] Processing NODE_5744_length_560_cov_7.138952:1-560 [pilon] Processing NODE_1607_length_1214_cov_1.946935:1-1214 [pilon] Processing NODE_9908_length_330_cov_10.827751:1-330 [pilon] Processing NODE_4246_length_688_cov_14.097002:1-688 [pilon] Processing NODE_8684_length_383_cov_40.068702:1-383 [pilon] Processing NODE_9321_length_353_cov_63.112069:1-353 [pilon] Processing NODE_9203_length_357_cov_21.254237:1-357 [pilon] NODE_9060_length_363_cov_25.185950:1-363 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 97, Coverage: 11, minDepth: 5 [pilon] Confirmed 223 of 363 bases (61.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9060_length_363_cov_25.185950:1-363 [pilon] Processing NODE_8686_length_383_cov_29.145038:1-383 [pilon] NODE_9908_length_330_cov_10.827751:1-330 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 38, Coverage: 2, minDepth: 5 [pilon] Confirmed 89 of 330 bases (26.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9908_length_330_cov_10.827751:1-330 [pilon] Processing NODE_5724_length_561_cov_27.934091:1-561 [pilon] NODE_9286_length_354_cov_19.386266:1-354 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 112, Coverage: 16, minDepth: 5 [pilon] Confirmed 300 of 354 bases (84.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9286_length_354_cov_19.386266:1-354 [pilon] Processing NODE_12134_length_243_cov_41.311475:1-243 [pilon] NODE_9203_length_357_cov_21.254237:1-357 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 110, Coverage: 10, minDepth: 5 [pilon] Confirmed 238 of 357 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9203_length_357_cov_21.254237:1-357 [pilon] Processing NODE_7309_length_453_cov_11.033133:1-453 [pilon] NODE_4742_length_640_cov_0.641618:1-640 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 19, Coverage: 4, minDepth: 5 [pilon] Confirmed 205 of 640 bases (32.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4742_length_640_cov_0.641618:1-640 [pilon] NODE_3030_length_868_cov_1.136546:1-868 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 25, Coverage: 3, minDepth: 5 [pilon] Confirmed 150 of 868 bases (17.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_14096_length_243_cov_13.475410:1-243 [pilon] Finished processing NODE_3030_length_868_cov_1.136546:1-868 [pilon] Processing NODE_13998_length_243_cov_14.213115:1-243 [pilon] NODE_8684_length_383_cov_40.068702:1-383 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 232, Coverage: 33, minDepth: 8 [pilon] Confirmed 354 of 383 bases (92.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8684_length_383_cov_40.068702:1-383 [pilon] Processing NODE_3123_length_848_cov_2.507565:1-848 [pilon] NODE_4246_length_688_cov_14.097002:1-688 log: [pilon] NODE_6341_length_514_cov_19.231552:1-514 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 220, Coverage: 26, minDepth: 7 [pilon] Confirmed 549 of 688 bases (79.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 173, Coverage: 14, minDepth: 5 [pilon] Confirmed 374 of 514 bases (72.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4246_length_688_cov_14.097002:1-688 [pilon] NODE_5744_length_560_cov_7.138952:1-560 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 69, Coverage: 13, minDepth: 5 [pilon] Confirmed 390 of 560 bases (69.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6341_length_514_cov_19.231552:1-514 [pilon] Finished processing NODE_5744_length_560_cov_7.138952:1-560 [pilon] Processing NODE_14206_length_243_cov_12.573770:1-243 [pilon] Processing NODE_10044_length_324_cov_9.039409:1-324 [pilon] NODE_5083_length_611_cov_33.265306:1-611 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 422, Coverage: 57, minDepth: 14 [pilon] Confirmed 537 of 611 bases (87.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5083_length_611_cov_33.265306:1-611 [pilon] Processing NODE_2091_length_1061_cov_37.856383:1-1061 [pilon] NODE_3443_length_792_cov_21.959762:1-792 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 446, Coverage: 49, minDepth: 12 [pilon] Confirmed 715 of 792 bases (90.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3443_length_792_cov_21.959762:1-792 [pilon] Processing NODE_10668_length_299_cov_18.657303:1-299 [pilon] Processing NODE_13749_length_243_cov_16.065574:1-243 [pilon] NODE_12235_length_243_cov_35.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 79, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12235_length_243_cov_35.163934:1-243 [pilon] Processing NODE_10121_length_321_cov_10.665000:1-321 [pilon] NODE_13730_length_243_cov_16.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13730_length_243_cov_16.180328:1-243 [pilon] Processing NODE_10931_length_287_cov_20.596386:1-287 [pilon] NODE_7829_length_426_cov_8.295082:1-426 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 62, Coverage: 10, minDepth: 5 [pilon] Confirmed 305 of 426 bases (71.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7829_length_426_cov_8.295082:1-426 [pilon] Processing NODE_1943_length_1099_cov_24.443763:1-1099 [pilon] NODE_1607_length_1214_cov_1.946935:1-1214 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 68, Coverage: 7, minDepth: 5 [pilon] Confirmed 879 of 1214 bases (72.41%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1607_length_1214_cov_1.946935:1-1214 [pilon] Processing NODE_1078_length_1453_cov_34.411411:1-1453 [pilon] NODE_2341_length_1002_cov_23.875142:1-1002 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 539, Coverage: 37, minDepth: 9 [pilon] Confirmed 742 of 1002 bases (74.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2341_length_1002_cov_23.875142:1-1002 [pilon] NODE_1683_length_1189_cov_8.014981:1-1189 log: [pilon] Processing NODE_6655_length_493_cov_18.827957:1-493 [pilon] NODE_11056_length_281_cov_19.762500:1-281 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 68, Coverage: 4, minDepth: 5 [pilon] Confirmed 128 of 281 bases (45.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11056_length_281_cov_19.762500:1-281 [pilon] Processing NODE_9585_length_342_cov_20.466063:1-342 [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 246, Coverage: 22, minDepth: 6 [pilon] Confirmed 979 of 1189 bases (82.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1683_length_1189_cov_8.014981:1-1189 [pilon] NODE_2076_length_1065_cov_49.500000:1-1065 log: [pilon] frags shovill.bam: coverage 124 [pilon] Total Reads: 1115, Coverage: 124, minDepth: 31 [pilon] Confirmed 923 of 1065 bases (86.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_12186_length_243_cov_37.278689:1-243 [pilon] Finished processing NODE_2076_length_1065_cov_49.500000:1-1065 [pilon] Processing NODE_9200_length_357_cov_23.372881:1-357 [pilon] NODE_1129_length_1425_cov_27.993098:1-1425 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 959, Coverage: 72, minDepth: 18 [pilon] Confirmed 1010 of 1425 bases (70.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1129_length_1425_cov_27.993098:1-1425 [pilon] Processing NODE_4765_length_638_cov_15.435203:1-638 [pilon] NODE_7378_length_450_cov_0.583587:1-450 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 450 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7378_length_450_cov_0.583587:1-450 [pilon] Processing NODE_13899_length_243_cov_14.901639:1-243 [pilon] NODE_468_length_1949_cov_20.439825:1-1949 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 879, Coverage: 50, minDepth: 13 [pilon] Confirmed 1680 of 1949 bases (86.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_468_length_1949_cov_20.439825:1-1949 [pilon] Processing NODE_8605_length_388_cov_8.344569:1-388 [pilon] NODE_10037_length_324_cov_14.330049:1-324 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 65, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 324 bases (40.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10037_length_324_cov_14.330049:1-324 [pilon] Processing NODE_6921_length_476_cov_18.690141:1-476 [pilon] NODE_10380_length_309_cov_25.388298:1-309 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 83, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 309 bases (42.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10380_length_309_cov_25.388298:1-309 [pilon] Processing NODE_433_length_1993_cov_1.446581:1-1993 [pilon] NODE_9321_length_353_cov_63.112069:1-353 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 325, Coverage: 58, minDepth: 15 [pilon] Confirmed 309 of 353 bases (87.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9321_length_353_cov_63.112069:1-353 [pilon] Processing NODE_5378_length_586_cov_1.939785:1-586 [pilon] NODE_7428_length_447_cov_2.355828:1-447 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 284 of 447 bases (63.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7428_length_447_cov_2.355828:1-447 [pilon] Processing NODE_4390_length_672_cov_20.063521:1-672 [pilon] NODE_3612_length_767_cov_7.246130:1-767 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 145, Coverage: 11, minDepth: 5 [pilon] Confirmed 554 of 767 bases (72.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3612_length_767_cov_7.246130:1-767 [pilon] Processing NODE_14328_length_243_cov_11.647541:1-243 [pilon] NODE_659_length_1739_cov_24.737948:1-1739 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 1052, Coverage: 53, minDepth: 13 [pilon] Confirmed 1498 of 1739 bases (86.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_659_length_1739_cov_24.737948:1-1739 [pilon] Processing NODE_6182_length_526_cov_0.659259:1-526 [pilon] NODE_228_length_2412_cov_16.491925:1-2412 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 915, Coverage: 39, minDepth: 10 [pilon] Confirmed 1451 of 2412 bases (60.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_228_length_2412_cov_16.491925:1-2412 [pilon] Processing NODE_13820_length_243_cov_15.516393:1-243 [pilon] NODE_12134_length_243_cov_41.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12134_length_243_cov_41.311475:1-243 [pilon] Processing NODE_5214_length_600_cov_22.586639:1-600 [pilon] NODE_10044_length_324_cov_9.039409:1-324 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 38, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 324 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10044_length_324_cov_9.039409:1-324 [pilon] Processing NODE_2717_length_926_cov_1.911801:1-926 [pilon] NODE_8686_length_383_cov_29.145038:1-383 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 183, Coverage: 31, minDepth: 8 [pilon] Confirmed 318 of 383 bases (83.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8686_length_383_cov_29.145038:1-383 [pilon] Processing NODE_2100_length_1059_cov_19.271855:1-1059 [pilon] NODE_13998_length_243_cov_14.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13998_length_243_cov_14.213115:1-243 [pilon] Processing NODE_13645_length_243_cov_17.098361:1-243 [pilon] NODE_10668_length_299_cov_18.657303:1-299 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 58, Coverage: 4, minDepth: 5 [pilon] Confirmed 128 of 299 bases (42.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10668_length_299_cov_18.657303:1-299 [pilon] Processing NODE_7089_length_465_cov_28.950581:1-465 [pilon] NODE_7309_length_453_cov_11.033133:1-453 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 93, Coverage: 7, minDepth: 5 [pilon] Confirmed 253 of 453 bases (55.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7309_length_453_cov_11.033133:1-453 [pilon] Processing NODE_6683_length_492_cov_8.854447:1-492 [pilon] NODE_14096_length_243_cov_13.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14096_length_243_cov_13.475410:1-243 [pilon] Processing NODE_4387_length_672_cov_29.764065:1-672 [pilon] NODE_3123_length_848_cov_2.507565:1-848 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 58, Coverage: 9, minDepth: 5 [pilon] Confirmed 612 of 848 bases (72.17%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3123_length_848_cov_2.507565:1-848 [pilon] Processing NODE_12023_length_246_cov_11.744000:1-246 [pilon] NODE_14206_length_243_cov_12.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14206_length_243_cov_12.573770:1-243 [pilon] Processing NODE_3927_length_724_cov_18.298507:1-724 [pilon] NODE_10121_length_321_cov_10.665000:1-321 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 50, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 321 bases (40.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10121_length_321_cov_10.665000:1-321 [pilon] Processing NODE_8820_length_375_cov_51.925197:1-375 [pilon] NODE_1943_length_1099_cov_24.443763:1-1099 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 577, Coverage: 61, minDepth: 15 [pilon] Confirmed 769 of 1099 bases (69.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1943_length_1099_cov_24.443763:1-1099 [pilon] Processing NODE_9741_length_336_cov_21.465116:1-336 [pilon] NODE_6655_length_493_cov_18.827957:1-493 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 161, Coverage: 22, minDepth: 6 [pilon] Confirmed 453 of 493 bases (91.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6655_length_493_cov_18.827957:1-493 [pilon] Processing NODE_3730_length_751_cov_1.047619:1-751 [pilon] NODE_5724_length_561_cov_27.934091:1-561 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 311, Coverage: 34, minDepth: 9 [pilon] Confirmed 430 of 561 bases (76.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5724_length_561_cov_27.934091:1-561 [pilon] Processing NODE_12779_length_243_cov_25.262295:1-243 [pilon] NODE_9200_length_357_cov_23.372881:1-357 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 132, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 357 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9200_length_357_cov_23.372881:1-357 [pilon] Processing NODE_3878_length_730_cov_35.330049:1-730 [pilon] NODE_12186_length_243_cov_37.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12186_length_243_cov_37.278689:1-243 [pilon] Processing NODE_8885_length_372_cov_31.099602:1-372 [pilon] NODE_13749_length_243_cov_16.065574:1-243 log: [pilon] NODE_9585_length_342_cov_20.466063:1-342 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 56, Coverage: 2, minDepth: 5 [pilon] Confirmed 95 of 342 bases (27.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_10931_length_287_cov_20.596386:1-287 log: [pilon] NODE_13899_length_243_cov_14.901639:1-243 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 69, Coverage: 4, minDepth: 5 [pilon] Confirmed 125 of 287 bases (43.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9585_length_342_cov_20.466063:1-342 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13749_length_243_cov_16.065574:1-243 [pilon] Processing NODE_8534_length_392_cov_26.911439:1-392 [pilon] NODE_2091_length_1061_cov_37.856383:1-1061 log: [pilon] Processing NODE_12257_length_243_cov_34.311475:1-243 [pilon] Finished processing NODE_10931_length_287_cov_20.596386:1-287 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_5916_length_546_cov_25.941176:1-546 [pilon] Finished processing NODE_13899_length_243_cov_14.901639:1-243 [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 801, Coverage: 69, minDepth: 17 [pilon] Confirmed 1009 of 1061 bases (95.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_11338_length_270_cov_17.691275:1-270 [pilon] Finished processing NODE_2091_length_1061_cov_37.856383:1-1061 [pilon] Processing NODE_8223_length_407_cov_26.276224:1-407 [pilon] NODE_8605_length_388_cov_8.344569:1-388 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 46, Coverage: 8, minDepth: 5 [pilon] Confirmed 255 of 388 bases (65.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8605_length_388_cov_8.344569:1-388 [pilon] Processing NODE_5255_length_596_cov_16.088421:1-596 [pilon] NODE_6182_length_526_cov_0.659259:1-526 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 31 of 526 bases (5.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6182_length_526_cov_0.659259:1-526 [pilon] Processing NODE_9087_length_362_cov_25.323651:1-362 [pilon] NODE_4765_length_638_cov_15.435203:1-638 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 168, Coverage: 17, minDepth: 5 [pilon] Confirmed 605 of 638 bases (94.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4765_length_638_cov_15.435203:1-638 [pilon] Processing NODE_777_length_1638_cov_15.046144:1-1638 [pilon] NODE_433_length_1993_cov_1.446581:1-1993 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 92, Coverage: 6, minDepth: 5 [pilon] Confirmed 1039 of 1993 bases (52.13%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_433_length_1993_cov_1.446581:1-1993 [pilon] Processing NODE_10623_length_300_cov_21.843575:1-300 [pilon] NODE_14328_length_243_cov_11.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_1078_length_1453_cov_34.411411:1-1453 log: [pilon] Finished processing NODE_14328_length_243_cov_11.647541:1-243 [pilon] Processing NODE_14385_length_243_cov_11.172131:1-243 [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 1153, Coverage: 78, minDepth: 20 [pilon] Confirmed 950 of 1453 bases (65.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1078_length_1453_cov_34.411411:1-1453 [pilon] Processing NODE_4060_length_710_cov_1.455008:1-710 [pilon] NODE_6921_length_476_cov_18.690141:1-476 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 153, Coverage: 25, minDepth: 6 [pilon] Confirmed 399 of 476 bases (83.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6921_length_476_cov_18.690141:1-476 [pilon] Processing NODE_6366_length_513_cov_0.829082:1-513 [pilon] NODE_5378_length_586_cov_1.939785:1-586 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 28, Coverage: 5, minDepth: 5 [pilon] Confirmed 402 of 586 bases (68.60%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5378_length_586_cov_1.939785:1-586 [pilon] Processing NODE_6876_length_479_cov_15.075419:1-479 [pilon] NODE_13820_length_243_cov_15.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13820_length_243_cov_15.516393:1-243 [pilon] Processing NODE_7333_length_452_cov_0.649547:1-452 [pilon] NODE_4390_length_672_cov_20.063521:1-672 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 266, Coverage: 35, minDepth: 9 [pilon] Confirmed 595 of 672 bases (88.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4390_length_672_cov_20.063521:1-672 [pilon] Processing NODE_3519_length_781_cov_1.468182:1-781 [pilon] NODE_2717_length_926_cov_1.911801:1-926 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 45, Coverage: 6, minDepth: 5 [pilon] Confirmed 601 of 926 bases (64.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2717_length_926_cov_1.911801:1-926 [pilon] Processing NODE_1339_length_1325_cov_33.758306:1-1325 [pilon] NODE_5214_length_600_cov_22.586639:1-600 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 231, Coverage: 29, minDepth: 7 [pilon] Confirmed 488 of 600 bases (81.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5214_length_600_cov_22.586639:1-600 [pilon] Processing NODE_12580_length_243_cov_27.770492:1-243 [pilon] NODE_7089_length_465_cov_28.950581:1-465 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 217, Coverage: 36, minDepth: 9 [pilon] Confirmed 373 of 465 bases (80.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7089_length_465_cov_28.950581:1-465 [pilon] Processing NODE_6612_length_496_cov_34.154667:1-496 [pilon] NODE_2100_length_1059_cov_19.271855:1-1059 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 416, Coverage: 42, minDepth: 11 [pilon] Confirmed 745 of 1059 bases (70.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2100_length_1059_cov_19.271855:1-1059 [pilon] Processing NODE_5092_length_611_cov_2.761224:1-611 [pilon] NODE_6683_length_492_cov_8.854447:1-492 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 83, Coverage: 10, minDepth: 5 [pilon] Confirmed 315 of 492 bases (64.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6683_length_492_cov_8.854447:1-492 [pilon] NODE_3730_length_751_cov_1.047619:1-751 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 326 of 751 bases (43.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3730_length_751_cov_1.047619:1-751 [pilon] Processing NODE_1302_length_1341_cov_10.436885:1-1341 [pilon] Processing NODE_8308_length_404_cov_10.081272:1-404 [pilon] NODE_12023_length_246_cov_11.744000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 27, Coverage: 3, minDepth: 5 [pilon] Confirmed 59 of 246 bases (23.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12023_length_246_cov_11.744000:1-246 [pilon] Processing NODE_1232_length_1373_cov_14.418530:1-1373 [pilon] NODE_13645_length_243_cov_17.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13645_length_243_cov_17.098361:1-243 [pilon] Processing NODE_4393_length_672_cov_8.061706:1-672 [pilon] NODE_9741_length_336_cov_21.465116:1-336 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 96, Coverage: 4, minDepth: 5 [pilon] Confirmed 131 of 336 bases (38.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9741_length_336_cov_21.465116:1-336 [pilon] Processing NODE_2256_length_1020_cov_2.678532:1-1020 [pilon] NODE_12779_length_243_cov_25.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_8820_length_375_cov_51.925197:1-375 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 294, Coverage: 64, minDepth: 16 [pilon] Confirmed 329 of 375 bases (87.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8820_length_375_cov_51.925197:1-375 [pilon] Processing NODE_11896_length_249_cov_20.906250:1-249 [pilon] Finished processing NODE_12779_length_243_cov_25.262295:1-243 [pilon] Processing NODE_6389_length_511_cov_12.923077:1-511 [pilon] NODE_3927_length_724_cov_18.298507:1-724 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 231, Coverage: 31, minDepth: 8 [pilon] Confirmed 589 of 724 bases (81.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3927_length_724_cov_18.298507:1-724 [pilon] Processing NODE_9647_length_339_cov_25.940367:1-339 [pilon] NODE_4387_length_672_cov_29.764065:1-672 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 331, Coverage: 39, minDepth: 10 [pilon] Confirmed 515 of 672 bases (76.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4387_length_672_cov_29.764065:1-672 [pilon] Processing NODE_5309_length_592_cov_1.414013:1-592 [pilon] NODE_8885_length_372_cov_31.099602:1-372 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 154, Coverage: 30, minDepth: 8 [pilon] Confirmed 316 of 372 bases (84.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8885_length_372_cov_31.099602:1-372 [pilon] Processing NODE_9728_length_336_cov_35.386047:1-336 [pilon] NODE_11338_length_270_cov_17.691275:1-270 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 55, Coverage: 3, minDepth: 5 [pilon] Confirmed 42 of 270 bases (15.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11338_length_270_cov_17.691275:1-270 [pilon] Processing NODE_13293_length_243_cov_20.278689:1-243 [pilon] NODE_3878_length_730_cov_35.330049:1-730 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 515, Coverage: 66, minDepth: 17 [pilon] Confirmed 666 of 730 bases (91.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3878_length_730_cov_35.330049:1-730 [pilon] Processing NODE_3430_length_794_cov_21.570579:1-794 [pilon] NODE_8534_length_392_cov_26.911439:1-392 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 195, Coverage: 30, minDepth: 8 [pilon] Confirmed 360 of 392 bases (91.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8534_length_392_cov_26.911439:1-392 [pilon] Processing NODE_14532_length_243_cov_10.016393:1-243 [pilon] NODE_5255_length_596_cov_16.088421:1-596 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 168, Coverage: 21, minDepth: 5 [pilon] Confirmed 507 of 596 bases (85.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5255_length_596_cov_16.088421:1-596 [pilon] Processing NODE_9627_length_340_cov_37.132420:1-340 [pilon] NODE_5916_length_546_cov_25.941176:1-546 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 240, Coverage: 33, minDepth: 8 [pilon] Confirmed 415 of 546 bases (76.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5916_length_546_cov_25.941176:1-546 [pilon] Processing NODE_6577_length_498_cov_24.819629:1-498 [pilon] NODE_8223_length_407_cov_26.276224:1-407 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 153, Coverage: 29, minDepth: 7 [pilon] Confirmed 357 of 407 bases (87.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8223_length_407_cov_26.276224:1-407 [pilon] Processing NODE_13217_length_243_cov_20.934426:1-243 [pilon] NODE_777_length_1638_cov_15.046144:1-1638 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 567, Coverage: 41, minDepth: 10 [pilon] Confirmed 1463 of 1638 bases (89.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_777_length_1638_cov_15.046144:1-1638 [pilon] Processing NODE_1714_length_1176_cov_27.667299:1-1176 [pilon] NODE_12257_length_243_cov_34.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 87, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12257_length_243_cov_34.311475:1-243 [pilon] Processing NODE_6082_length_533_cov_38.752427:1-533 [pilon] NODE_10623_length_300_cov_21.843575:1-300 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 66, Coverage: 4, minDepth: 5 [pilon] Confirmed 131 of 300 bases (43.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10623_length_300_cov_21.843575:1-300 [pilon] Processing NODE_1473_length_1273_cov_18.132812:1-1273 [pilon] NODE_9087_length_362_cov_25.323651:1-362 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 142, Coverage: 11, minDepth: 5 [pilon] Confirmed 315 of 362 bases (87.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9087_length_362_cov_25.323651:1-362 [pilon] Processing NODE_5316_length_591_cov_21.570213:1-591 [pilon] NODE_6876_length_479_cov_15.075419:1-479 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 114, Coverage: 12, minDepth: 5 [pilon] Confirmed 311 of 479 bases (64.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6876_length_479_cov_15.075419:1-479 [pilon] Processing NODE_6646_length_494_cov_25.064343:1-494 [pilon] NODE_7333_length_452_cov_0.649547:1-452 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 10, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 452 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7333_length_452_cov_0.649547:1-452 [pilon] Processing NODE_15017_length_243_cov_5.245902:1-243 [pilon] NODE_6366_length_513_cov_0.829082:1-513 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 11, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 513 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6366_length_513_cov_0.829082:1-513 [pilon] Processing NODE_10505_length_304_cov_20.409836:1-304 [pilon] NODE_14385_length_243_cov_11.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14385_length_243_cov_11.172131:1-243 [pilon] Processing NODE_11447_length_265_cov_11.597222:1-265 [pilon] NODE_4060_length_710_cov_1.455008:1-710 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 28, Coverage: 5, minDepth: 5 [pilon] Confirmed 381 of 710 bases (53.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4060_length_710_cov_1.455008:1-710 [pilon] Processing NODE_5638_length_568_cov_1.807606:1-568 [pilon] NODE_3519_length_781_cov_1.468182:1-781 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 350 of 781 bases (44.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3519_length_781_cov_1.468182:1-781 [pilon] Processing NODE_5871_length_550_cov_0.766900:1-550 [pilon] NODE_1339_length_1325_cov_33.758306:1-1325 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 926, Coverage: 77, minDepth: 19 [pilon] Confirmed 844 of 1325 bases (63.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1339_length_1325_cov_33.758306:1-1325 [pilon] Processing NODE_7368_length_450_cov_13.027356:1-450 [pilon] NODE_12580_length_243_cov_27.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12580_length_243_cov_27.770492:1-243 [pilon] Processing NODE_14220_length_243_cov_12.434426:1-243 [pilon] NODE_8308_length_404_cov_10.081272:1-404 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 91, Coverage: 11, minDepth: 5 [pilon] Confirmed 256 of 404 bases (63.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8308_length_404_cov_10.081272:1-404 [pilon] Processing NODE_11885_length_249_cov_25.781250:1-249 [pilon] NODE_1302_length_1341_cov_10.436885:1-1341 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 355, Coverage: 24, minDepth: 6 [pilon] Confirmed 1144 of 1341 bases (85.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1302_length_1341_cov_10.436885:1-1341 [pilon] Processing NODE_2251_length_1020_cov_32.173526:1-1020 [pilon] NODE_5092_length_611_cov_2.761224:1-611 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 357 of 611 bases (58.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5092_length_611_cov_2.761224:1-611 [pilon] Processing NODE_12196_length_243_cov_36.983607:1-243 [pilon] NODE_6612_length_496_cov_34.154667:1-496 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 326, Coverage: 40, minDepth: 10 [pilon] Confirmed 386 of 496 bases (77.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6612_length_496_cov_34.154667:1-496 [pilon] Processing NODE_970_length_1514_cov_1.780330:1-1514 [pilon] NODE_6389_length_511_cov_12.923077:1-511 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 114, Coverage: 15, minDepth: 5 [pilon] Confirmed 298 of 511 bases (58.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6389_length_511_cov_12.923077:1-511 [pilon] Processing NODE_6749_length_486_cov_24.082192:1-486 [pilon] NODE_2256_length_1020_cov_2.678532:1-1020 log: [pilon] NODE_4393_length_672_cov_8.061706:1-672 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 104, Coverage: 20, minDepth: 5 [pilon] Confirmed 476 of 672 bases (70.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4393_length_672_cov_8.061706:1-672 [pilon] Processing NODE_7733_length_431_cov_0.606452:1-431 [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 74, Coverage: 9, minDepth: 5 [pilon] Confirmed 731 of 1020 bases (71.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2256_length_1020_cov_2.678532:1-1020 [pilon] Processing NODE_7318_length_452_cov_35.202417:1-452 [pilon] NODE_9647_length_339_cov_25.940367:1-339 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 99, Coverage: 5, minDepth: 5 [pilon] Confirmed 141 of 339 bases (41.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9647_length_339_cov_25.940367:1-339 [pilon] Processing NODE_3886_length_730_cov_0.898194:1-730 [pilon] NODE_11896_length_249_cov_20.906250:1-249 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 63, Coverage: 8, minDepth: 5 [pilon] Confirmed 210 of 249 bases (84.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11896_length_249_cov_20.906250:1-249 [pilon] Processing NODE_10408_length_308_cov_28.556150:1-308 [pilon] NODE_1232_length_1373_cov_14.418530:1-1373 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 426, Coverage: 20, minDepth: 5 [pilon] Confirmed 1104 of 1373 bases (80.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1232_length_1373_cov_14.418530:1-1373 [pilon] Processing NODE_7164_length_462_cov_1.607038:1-462 [pilon] NODE_5309_length_592_cov_1.414013:1-592 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 323 of 592 bases (54.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5309_length_592_cov_1.414013:1-592 [pilon] Processing NODE_11109_length_279_cov_19.455696:1-279 [pilon] NODE_13293_length_243_cov_20.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13293_length_243_cov_20.278689:1-243 [pilon] Processing NODE_5609_length_570_cov_2.380846:1-570 [pilon] NODE_3430_length_794_cov_21.570579:1-794 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 369, Coverage: 37, minDepth: 9 [pilon] Confirmed 668 of 794 bases (84.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3430_length_794_cov_21.570579:1-794 [pilon] Processing NODE_5676_length_564_cov_28.203160:1-564 [pilon] NODE_9728_length_336_cov_35.386047:1-336 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 152, Coverage: 20, minDepth: 5 [pilon] Confirmed 240 of 336 bases (71.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9728_length_336_cov_35.386047:1-336 [pilon] Processing NODE_5158_length_605_cov_14.340909:1-605 [pilon] NODE_14532_length_243_cov_10.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14532_length_243_cov_10.016393:1-243 [pilon] NODE_9627_length_340_cov_37.132420:1-340 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 177, Coverage: 23, minDepth: 6 [pilon] Confirmed 303 of 340 bases (89.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9627_length_340_cov_37.132420:1-340 [pilon] Processing NODE_6794_length_483_cov_25.560773:1-483 [pilon] Processing NODE_3329_length_810_cov_29.738752:1-810 [pilon] NODE_6577_length_498_cov_24.819629:1-498 log: [pilon] NODE_13217_length_243_cov_20.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13217_length_243_cov_20.934426:1-243 [pilon] Processing NODE_10833_length_291_cov_14.494118:1-291 [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 204, Coverage: 37, minDepth: 9 [pilon] Confirmed 403 of 498 bases (80.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6577_length_498_cov_24.819629:1-498 [pilon] Processing NODE_4981_length_620_cov_2.655311:1-620 [pilon] NODE_1714_length_1176_cov_27.667299:1-1176 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 699, Coverage: 61, minDepth: 15 [pilon] Confirmed 1116 of 1176 bases (94.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1714_length_1176_cov_27.667299:1-1176 [pilon] Processing NODE_8299_length_405_cov_0.338028:1-405 [pilon] NODE_6082_length_533_cov_38.752427:1-533 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 363, Coverage: 56, minDepth: 14 [pilon] Confirmed 449 of 533 bases (84.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6082_length_533_cov_38.752427:1-533 [pilon] Processing NODE_10061_length_323_cov_11.608911:1-323 [pilon] NODE_5316_length_591_cov_21.570213:1-591 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 235, Coverage: 24, minDepth: 6 [pilon] Confirmed 432 of 591 bases (73.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5316_length_591_cov_21.570213:1-591 [pilon] Processing NODE_7287_length_455_cov_12.553892:1-455 [pilon] NODE_15017_length_243_cov_5.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15017_length_243_cov_5.245902:1-243 [pilon] Processing NODE_4620_length_651_cov_2.535849:1-651 [pilon] NODE_10505_length_304_cov_20.409836:1-304 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 62, Coverage: 4, minDepth: 5 [pilon] Confirmed 137 of 304 bases (45.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10505_length_304_cov_20.409836:1-304 [pilon] Processing NODE_7106_length_465_cov_11.909884:1-465 [pilon] NODE_6646_length_494_cov_25.064343:1-494 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 222, Coverage: 36, minDepth: 9 [pilon] Confirmed 415 of 494 bases (84.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6646_length_494_cov_25.064343:1-494 [pilon] Processing NODE_2741_length_920_cov_9.430538:1-920 [pilon] NODE_1473_length_1273_cov_18.132812:1-1273 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 514, Coverage: 33, minDepth: 8 [pilon] Confirmed 1182 of 1273 bases (92.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1473_length_1273_cov_18.132812:1-1273 [pilon] Processing NODE_8218_length_408_cov_0.630662:1-408 [pilon] NODE_5871_length_550_cov_0.766900:1-550 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 219 of 550 bases (39.82%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5871_length_550_cov_0.766900:1-550 [pilon] Processing NODE_12766_length_243_cov_25.409836:1-243 [pilon] NODE_5638_length_568_cov_1.807606:1-568 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 260 of 568 bases (45.77%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5638_length_568_cov_1.807606:1-568 [pilon] Processing NODE_2493_length_969_cov_2.054245:1-969 [pilon] NODE_7368_length_450_cov_13.027356:1-450 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 101, Coverage: 19, minDepth: 5 [pilon] Confirmed 369 of 450 bases (82.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7368_length_450_cov_13.027356:1-450 [pilon] Processing NODE_14311_length_243_cov_11.778689:1-243 [pilon] NODE_11447_length_265_cov_11.597222:1-265 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 43, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 265 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11447_length_265_cov_11.597222:1-265 [pilon] Processing NODE_7342_length_451_cov_12.172727:1-451 [pilon] NODE_14220_length_243_cov_12.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14220_length_243_cov_12.434426:1-243 [pilon] Processing NODE_13442_length_243_cov_18.918033:1-243 [pilon] NODE_7733_length_431_cov_0.606452:1-431 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 7 of 431 bases (1.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7733_length_431_cov_0.606452:1-431 [pilon] Processing NODE_13140_length_243_cov_21.614754:1-243 [pilon] NODE_5676_length_564_cov_28.203160:1-564 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 277, Coverage: 31, minDepth: 8 [pilon] Confirmed 342 of 564 bases (60.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5676_length_564_cov_28.203160:1-564 [pilon] Processing NODE_13334_length_243_cov_19.959016:1-243 [pilon] NODE_12196_length_243_cov_36.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 94, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12196_length_243_cov_36.983607:1-243 [pilon] Processing NODE_12942_length_243_cov_23.475410:1-243 [pilon] NODE_11885_length_249_cov_25.781250:1-249 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 74, Coverage: 6, minDepth: 5 [pilon] Confirmed 148 of 249 bases (59.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11885_length_249_cov_25.781250:1-249 [pilon] Processing NODE_9688_length_339_cov_8.811927:1-339 [pilon] NODE_970_length_1514_cov_1.780330:1-1514 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 77, Coverage: 6, minDepth: 5 [pilon] Confirmed 1038 of 1514 bases (68.56%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_970_length_1514_cov_1.780330:1-1514 [pilon] Processing NODE_6072_length_534_cov_14.641646:1-534 [pilon] NODE_2251_length_1020_cov_32.173526:1-1020 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 698, Coverage: 63, minDepth: 16 [pilon] Confirmed 847 of 1020 bases (83.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2251_length_1020_cov_32.173526:1-1020 [pilon] Processing NODE_9454_length_348_cov_12.110132:1-348 [pilon] NODE_10408_length_308_cov_28.556150:1-308 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 120, Coverage: 15, minDepth: 5 [pilon] Confirmed 260 of 308 bases (84.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10408_length_308_cov_28.556150:1-308 [pilon] Processing NODE_9547_length_344_cov_33.538117:1-344 [pilon] NODE_3886_length_730_cov_0.898194:1-730 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 159 of 730 bases (21.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3886_length_730_cov_0.898194:1-730 [pilon] Processing NODE_765_length_1650_cov_26.083061:1-1650 [pilon] NODE_7318_length_452_cov_35.202417:1-452 log: [pilon] NODE_11109_length_279_cov_19.455696:1-279 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 66, Coverage: 7, minDepth: 5 [pilon] Confirmed 190 of 279 bases (68.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11109_length_279_cov_19.455696:1-279 [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 293, Coverage: 23, minDepth: 6 [pilon] Confirmed 201 of 452 bases (44.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7318_length_452_cov_35.202417:1-452 [pilon] Processing NODE_1076_length_1454_cov_9.734434:1-1454 [pilon] NODE_6749_length_486_cov_24.082192:1-486 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 179, Coverage: 20, minDepth: 5 [pilon] Confirmed 347 of 486 bases (71.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7164_length_462_cov_1.607038:1-462 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 285 of 462 bases (61.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7164_length_462_cov_1.607038:1-462 [pilon] Processing NODE_3769_length_745_cov_0.349359:1-745 [pilon] Processing NODE_6740_length_487_cov_28.051913:1-487 [pilon] Finished processing NODE_6749_length_486_cov_24.082192:1-486 [pilon] Processing NODE_3636_length_763_cov_26.593458:1-763 [pilon] NODE_5609_length_570_cov_2.380846:1-570 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 39, Coverage: 7, minDepth: 5 [pilon] Confirmed 435 of 570 bases (76.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5609_length_570_cov_2.380846:1-570 [pilon] Processing NODE_6110_length_531_cov_18.207317:1-531 [pilon] NODE_6794_length_483_cov_25.560773:1-483 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 193, Coverage: 36, minDepth: 9 [pilon] Confirmed 389 of 483 bases (80.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6794_length_483_cov_25.560773:1-483 [pilon] Processing NODE_11557_length_261_cov_31.342857:1-261 [pilon] NODE_10833_length_291_cov_14.494118:1-291 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 49, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 291 bases (44.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10833_length_291_cov_14.494118:1-291 [pilon] Processing NODE_3732_length_750_cov_23.890302:1-750 [pilon] NODE_5158_length_605_cov_14.340909:1-605 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 159, Coverage: 26, minDepth: 7 [pilon] Confirmed 504 of 605 bases (83.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5158_length_605_cov_14.340909:1-605 [pilon] Processing NODE_12849_length_243_cov_24.540984:1-243 [pilon] NODE_8299_length_405_cov_0.338028:1-405 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 405 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8299_length_405_cov_0.338028:1-405 [pilon] Processing NODE_14422_length_243_cov_10.901639:1-243 [pilon] NODE_3329_length_810_cov_29.738752:1-810 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 493, Coverage: 59, minDepth: 15 [pilon] Confirmed 677 of 810 bases (83.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3329_length_810_cov_29.738752:1-810 [pilon] Processing NODE_14337_length_243_cov_11.557377:1-243 [pilon] NODE_4981_length_620_cov_2.655311:1-620 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 367 of 620 bases (59.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4981_length_620_cov_2.655311:1-620 [pilon] Processing NODE_11160_length_277_cov_13.198718:1-277 [pilon] NODE_7106_length_465_cov_11.909884:1-465 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 97, Coverage: 11, minDepth: 5 [pilon] Confirmed 281 of 465 bases (60.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7106_length_465_cov_11.909884:1-465 [pilon] Processing NODE_12507_length_243_cov_29.008197:1-243 [pilon] NODE_10061_length_323_cov_11.608911:1-323 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 63, Coverage: 5, minDepth: 5 [pilon] Confirmed 175 of 323 bases (54.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10061_length_323_cov_11.608911:1-323 [pilon] Processing NODE_3011_length_871_cov_8.720000:1-871 [pilon] NODE_4620_length_651_cov_2.535849:1-651 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 38, Coverage: 8, minDepth: 5 [pilon] Confirmed 493 of 651 bases (75.73%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4620_length_651_cov_2.535849:1-651 [pilon] Processing NODE_1235_length_1372_cov_2.860112:1-1372 [pilon] NODE_7287_length_455_cov_12.553892:1-455 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 83, Coverage: 5, minDepth: 5 [pilon] Confirmed 177 of 455 bases (38.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7287_length_455_cov_12.553892:1-455 [pilon] Processing NODE_977_length_1511_cov_2.558273:1-1511 [pilon] NODE_2741_length_920_cov_9.430538:1-920 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 183, Coverage: 18, minDepth: 5 [pilon] Confirmed 686 of 920 bases (74.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2741_length_920_cov_9.430538:1-920 [pilon] Processing NODE_7431_length_447_cov_1.352761:1-447 [pilon] NODE_8218_length_408_cov_0.630662:1-408 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 408 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8218_length_408_cov_0.630662:1-408 [pilon] Processing NODE_11007_length_284_cov_19.380368:1-284 [pilon] NODE_2493_length_969_cov_2.054245:1-969 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 51, Coverage: 7, minDepth: 5 [pilon] Confirmed 595 of 969 bases (61.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2493_length_969_cov_2.054245:1-969 [pilon] Processing NODE_14523_length_243_cov_10.106557:1-243 [pilon] NODE_12766_length_243_cov_25.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12766_length_243_cov_25.409836:1-243 [pilon] Processing NODE_980_length_1509_cov_1.510086:1-1509 [pilon] NODE_7342_length_451_cov_12.172727:1-451 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 90, Coverage: 14, minDepth: 5 [pilon] Confirmed 377 of 451 bases (83.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7342_length_451_cov_12.172727:1-451 [pilon] Processing NODE_11706_length_255_cov_31.589552:1-255 [pilon] NODE_14311_length_243_cov_11.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14311_length_243_cov_11.778689:1-243 [pilon] Processing NODE_9522_length_345_cov_15.254464:1-345 [pilon] NODE_13442_length_243_cov_18.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13442_length_243_cov_18.918033:1-243 [pilon] Processing NODE_2101_length_1059_cov_1.312367:1-1059 [pilon] NODE_13334_length_243_cov_19.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13334_length_243_cov_19.959016:1-243 [pilon] Processing NODE_2818_length_906_cov_28.783439:1-906 [pilon] NODE_13140_length_243_cov_21.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13140_length_243_cov_21.614754:1-243 [pilon] Processing NODE_874_length_1580_cov_16.738177:1-1580 [pilon] NODE_12942_length_243_cov_23.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12942_length_243_cov_23.475410:1-243 [pilon] Processing NODE_6475_length_505_cov_17.690104:1-505 [pilon] NODE_9688_length_339_cov_8.811927:1-339 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 339 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9688_length_339_cov_8.811927:1-339 [pilon] Processing NODE_5662_length_566_cov_2.734831:1-566 [pilon] NODE_6072_length_534_cov_14.641646:1-534 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 128, Coverage: 10, minDepth: 5 [pilon] Confirmed 335 of 534 bases (62.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6072_length_534_cov_14.641646:1-534 [pilon] Processing NODE_3084_length_856_cov_24.216327:1-856 [pilon] NODE_9454_length_348_cov_12.110132:1-348 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 65, Coverage: 8, minDepth: 5 [pilon] Confirmed 213 of 348 bases (61.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9454_length_348_cov_12.110132:1-348 [pilon] Processing NODE_7520_length_442_cov_14.224299:1-442 [pilon] NODE_9547_length_344_cov_33.538117:1-344 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 172, Coverage: 26, minDepth: 7 [pilon] Confirmed 294 of 344 bases (85.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9547_length_344_cov_33.538117:1-344 [pilon] Processing NODE_5123_length_608_cov_5.223819:1-608 [pilon] NODE_3636_length_763_cov_26.593458:1-763 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 391, Coverage: 46, minDepth: 12 [pilon] Confirmed 570 of 763 bases (74.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3636_length_763_cov_26.593458:1-763 [pilon] Processing NODE_10009_length_324_cov_32.487685:1-324 [pilon] NODE_1076_length_1454_cov_9.734434:1-1454 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 291, Coverage: 26, minDepth: 7 [pilon] Confirmed 1251 of 1454 bases (86.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1076_length_1454_cov_9.734434:1-1454 [pilon] Processing NODE_6955_length_474_cov_11.685552:1-474 [pilon] NODE_14422_length_243_cov_10.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14422_length_243_cov_10.901639:1-243 [pilon] Processing NODE_3412_length_797_cov_12.394970:1-797 [pilon] NODE_11557_length_261_cov_31.342857:1-261 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 92, Coverage: 5, minDepth: 5 [pilon] Confirmed 144 of 261 bases (55.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11557_length_261_cov_31.342857:1-261 [pilon] Processing NODE_10316_length_312_cov_26.141361:1-312 [pilon] NODE_6740_length_487_cov_28.051913:1-487 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 262, Coverage: 35, minDepth: 9 [pilon] Confirmed 425 of 487 bases (87.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6740_length_487_cov_28.051913:1-487 [pilon] Processing NODE_701_length_1703_cov_23.945638:1-1703 [pilon] NODE_3769_length_745_cov_0.349359:1-745 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 120 of 745 bases (16.11%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3769_length_745_cov_0.349359:1-745 [pilon] Processing NODE_4343_length_676_cov_30.282883:1-676 [pilon] NODE_6110_length_531_cov_18.207317:1-531 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 172, Coverage: 23, minDepth: 6 [pilon] Confirmed 428 of 531 bases (80.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6110_length_531_cov_18.207317:1-531 [pilon] Processing NODE_6650_length_494_cov_1.040214:1-494 [pilon] NODE_12849_length_243_cov_24.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12849_length_243_cov_24.540984:1-243 [pilon] Processing NODE_979_length_1510_cov_3.975522:1-1510 [pilon] NODE_765_length_1650_cov_26.083061:1-1650 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 1012, Coverage: 72, minDepth: 18 [pilon] Confirmed 1399 of 1650 bases (84.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_765_length_1650_cov_26.083061:1-1650 [pilon] Processing NODE_3584_length_771_cov_18.235385:1-771 [pilon] NODE_14337_length_243_cov_11.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14337_length_243_cov_11.557377:1-243 [pilon] Processing NODE_14574_length_243_cov_9.647541:1-243 [pilon] NODE_3732_length_750_cov_23.890302:1-750 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 325, Coverage: 36, minDepth: 9 [pilon] Confirmed 607 of 750 bases (80.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3732_length_750_cov_23.890302:1-750 [pilon] Processing NODE_10861_length_290_cov_8.923077:1-290 [pilon] NODE_12507_length_243_cov_29.008197:1-243 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 79, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12507_length_243_cov_29.008197:1-243 [pilon] Processing NODE_1589_length_1223_cov_29.856624:1-1223 [pilon] NODE_3011_length_871_cov_8.720000:1-871 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 154, Coverage: 17, minDepth: 5 [pilon] Confirmed 806 of 871 bases (92.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3011_length_871_cov_8.720000:1-871 [pilon] Processing NODE_5231_length_598_cov_4.117400:1-598 [pilon] NODE_11160_length_277_cov_13.198718:1-277 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 44, Coverage: 3, minDepth: 5 [pilon] Confirmed 93 of 277 bases (33.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11160_length_277_cov_13.198718:1-277 [pilon] Processing NODE_14090_length_243_cov_13.524590:1-243 [pilon] NODE_1235_length_1372_cov_2.860112:1-1372 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 94, Coverage: 9, minDepth: 5 [pilon] Confirmed 901 of 1372 bases (65.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1235_length_1372_cov_2.860112:1-1372 [pilon] Processing NODE_8670_length_384_cov_13.969582:1-384 [pilon] NODE_977_length_1511_cov_2.558273:1-1511 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 100, Coverage: 8, minDepth: 5 [pilon] Confirmed 1152 of 1511 bases (76.24%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_977_length_1511_cov_2.558273:1-1511 [pilon] Processing NODE_9319_length_354_cov_5.686695:1-354 [pilon] NODE_7431_length_447_cov_1.352761:1-447 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 132 of 447 bases (29.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7431_length_447_cov_1.352761:1-447 [pilon] Processing NODE_13286_length_243_cov_20.311475:1-243 [pilon] NODE_11007_length_284_cov_19.380368:1-284 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 72, Coverage: 11, minDepth: 5 [pilon] Confirmed 229 of 284 bases (80.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11007_length_284_cov_19.380368:1-284 [pilon] Processing NODE_5842_length_552_cov_18.559165:1-552 [pilon] NODE_14523_length_243_cov_10.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14523_length_243_cov_10.106557:1-243 [pilon] Processing NODE_4892_length_627_cov_12.448617:1-627 [pilon] NODE_980_length_1509_cov_1.510086:1-1509 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 74, Coverage: 6, minDepth: 5 [pilon] Confirmed 686 of 1509 bases (45.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_980_length_1509_cov_1.510086:1-1509 [pilon] Processing NODE_13396_length_243_cov_19.336066:1-243 [pilon] NODE_11706_length_255_cov_31.589552:1-255 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 88, Coverage: 9, minDepth: 5 [pilon] Confirmed 216 of 255 bases (84.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11706_length_255_cov_31.589552:1-255 [pilon] Processing NODE_11497_length_264_cov_8.321678:1-264 [pilon] NODE_9522_length_345_cov_15.254464:1-345 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 80, Coverage: 2, minDepth: 5 [pilon] Confirmed 109 of 345 bases (31.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9522_length_345_cov_15.254464:1-345 [pilon] Processing NODE_4510_length_660_cov_54.250464:1-660 [pilon] NODE_2101_length_1059_cov_1.312367:1-1059 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 39, Coverage: 4, minDepth: 5 [pilon] Confirmed 578 of 1059 bases (54.58%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2101_length_1059_cov_1.312367:1-1059 [pilon] Processing NODE_7370_length_450_cov_12.030395:1-450 [pilon] NODE_2818_length_906_cov_28.783439:1-906 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 504, Coverage: 56, minDepth: 14 [pilon] Confirmed 670 of 906 bases (73.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2818_length_906_cov_28.783439:1-906 [pilon] Processing NODE_10802_length_293_cov_23.587209:1-293 [pilon] NODE_874_length_1580_cov_16.738177:1-1580 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 721, Coverage: 45, minDepth: 11 [pilon] Confirmed 1203 of 1580 bases (76.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_874_length_1580_cov_16.738177:1-1580 [pilon] Processing NODE_13547_length_243_cov_17.959016:1-243 [pilon] NODE_6475_length_505_cov_17.690104:1-505 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 163, Coverage: 16, minDepth: 5 [pilon] Confirmed 382 of 505 bases (75.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6475_length_505_cov_17.690104:1-505 [pilon] Processing NODE_8462_length_396_cov_14.181818:1-396 [pilon] NODE_5662_length_566_cov_2.734831:1-566 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 46, Coverage: 10, minDepth: 5 [pilon] Confirmed 447 of 566 bases (78.98%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5662_length_566_cov_2.734831:1-566 [pilon] Processing NODE_375_length_2087_cov_2.901322:1-2087 [pilon] NODE_3084_length_856_cov_24.216327:1-856 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 442, Coverage: 38, minDepth: 10 [pilon] Confirmed 751 of 856 bases (87.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3084_length_856_cov_24.216327:1-856 [pilon] Processing NODE_1602_length_1216_cov_26.721461:1-1216 [pilon] NODE_7520_length_442_cov_14.224299:1-442 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 119, Coverage: 16, minDepth: 5 [pilon] Confirmed 382 of 442 bases (86.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7520_length_442_cov_14.224299:1-442 [pilon] Processing NODE_1127_length_1426_cov_18.590038:1-1426 [pilon] NODE_6650_length_494_cov_1.040214:1-494 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 42 of 494 bases (8.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6650_length_494_cov_1.040214:1-494 [pilon] Processing NODE_12798_length_243_cov_25.040984:1-243 [pilon] NODE_10009_length_324_cov_32.487685:1-324 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 122, Coverage: 7, minDepth: 5 [pilon] Confirmed 163 of 324 bases (50.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10009_length_324_cov_32.487685:1-324 [pilon] Processing NODE_6348_length_514_cov_1.862595:1-514 [pilon] NODE_5123_length_608_cov_5.223819:1-608 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 83, Coverage: 1, minDepth: 5 [pilon] Confirmed 55 of 608 bases (9.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5123_length_608_cov_5.223819:1-608 [pilon] Processing NODE_6569_length_499_cov_1.005291:1-499 [pilon] NODE_6955_length_474_cov_11.685552:1-474 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 90, Coverage: 13, minDepth: 5 [pilon] Confirmed 338 of 474 bases (71.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6955_length_474_cov_11.685552:1-474 [pilon] Processing NODE_12341_length_243_cov_32.442623:1-243 [pilon] NODE_4343_length_676_cov_30.282883:1-676 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 357, Coverage: 57, minDepth: 14 [pilon] Confirmed 594 of 676 bases (87.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4343_length_676_cov_30.282883:1-676 [pilon] Processing NODE_3797_length_741_cov_13.251613:1-741 [pilon] NODE_10316_length_312_cov_26.141361:1-312 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 103, Coverage: 14, minDepth: 5 [pilon] Confirmed 247 of 312 bases (79.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10316_length_312_cov_26.141361:1-312 [pilon] Processing NODE_4649_length_648_cov_8.884250:1-648 [pilon] NODE_979_length_1510_cov_3.975522:1-1510 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 152, Coverage: 12, minDepth: 5 [pilon] Confirmed 1421 of 1510 bases (94.11%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_979_length_1510_cov_3.975522:1-1510 [pilon] Processing NODE_4986_length_619_cov_24.140562:1-619 [pilon] NODE_3584_length_771_cov_18.235385:1-771 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 242, Coverage: 26, minDepth: 7 [pilon] Confirmed 582 of 771 bases (75.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3584_length_771_cov_18.235385:1-771 [pilon] Processing NODE_7418_length_447_cov_16.533742:1-447 [pilon] NODE_10861_length_290_cov_8.923077:1-290 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 208 of 290 bases (71.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10861_length_290_cov_8.923077:1-290 [pilon] Processing NODE_10472_length_306_cov_10.729730:1-306 [pilon] NODE_3412_length_797_cov_12.394970:1-797 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 218, Coverage: 23, minDepth: 6 [pilon] Confirmed 739 of 797 bases (92.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3412_length_797_cov_12.394970:1-797 [pilon] Processing NODE_14052_length_243_cov_13.819672:1-243 [pilon] NODE_701_length_1703_cov_23.945638:1-1703 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 1068, Coverage: 60, minDepth: 15 [pilon] Confirmed 1248 of 1703 bases (73.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_701_length_1703_cov_23.945638:1-1703 [pilon] Processing NODE_1512_length_1252_cov_27.044209:1-1252 [pilon] NODE_14090_length_243_cov_13.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14090_length_243_cov_13.524590:1-243 [pilon] Processing NODE_4420_length_669_cov_15.145985:1-669 [pilon] NODE_5231_length_598_cov_4.117400:1-598 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 43, Coverage: 9, minDepth: 5 [pilon] Confirmed 386 of 598 bases (64.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5231_length_598_cov_4.117400:1-598 [pilon] Processing NODE_12503_length_243_cov_29.040984:1-243 [pilon] NODE_14574_length_243_cov_9.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14574_length_243_cov_9.647541:1-243 [pilon] Processing NODE_2299_length_1011_cov_15.803371:1-1011 [pilon] NODE_8670_length_384_cov_13.969582:1-384 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 90, Coverage: 2, minDepth: 5 [pilon] Confirmed 124 of 384 bases (32.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8670_length_384_cov_13.969582:1-384 [pilon] Processing NODE_4482_length_663_cov_14.440959:1-663 [pilon] NODE_13286_length_243_cov_20.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13286_length_243_cov_20.311475:1-243 [pilon] Processing NODE_764_length_1651_cov_19.264706:1-1651 [pilon] NODE_1589_length_1223_cov_29.856624:1-1223 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 772, Coverage: 65, minDepth: 16 [pilon] Confirmed 1007 of 1223 bases (82.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1589_length_1223_cov_29.856624:1-1223 [pilon] Processing NODE_5988_length_542_cov_10.220903:1-542 [pilon] NODE_9319_length_354_cov_5.686695:1-354 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 36, Coverage: 5, minDepth: 5 [pilon] Confirmed 227 of 354 bases (64.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9319_length_354_cov_5.686695:1-354 [pilon] Processing NODE_12402_length_243_cov_30.852459:1-243 [pilon] NODE_5842_length_552_cov_18.559165:1-552 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 190, Coverage: 27, minDepth: 7 [pilon] Confirmed 405 of 552 bases (73.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5842_length_552_cov_18.559165:1-552 [pilon] Processing NODE_8297_length_405_cov_1.985915:1-405 [pilon] NODE_11497_length_264_cov_8.321678:1-264 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 26, Coverage: 4, minDepth: 5 [pilon] Confirmed 107 of 264 bases (40.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11497_length_264_cov_8.321678:1-264 [pilon] NODE_13396_length_243_cov_19.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_9383_length_351_cov_14.860870:1-351 [pilon] Finished processing NODE_13396_length_243_cov_19.336066:1-243 [pilon] Processing NODE_7410_length_447_cov_27.840491:1-447 [pilon] NODE_4892_length_627_cov_12.448617:1-627 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 146, Coverage: 29, minDepth: 7 [pilon] Confirmed 469 of 627 bases (74.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4892_length_627_cov_12.448617:1-627 [pilon] Processing NODE_670_length_1729_cov_2.188433:1-1729 [pilon] NODE_7370_length_450_cov_12.030395:1-450 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 94, Coverage: 15, minDepth: 5 [pilon] Confirmed 328 of 450 bases (72.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7370_length_450_cov_12.030395:1-450 [pilon] Processing NODE_10825_length_291_cov_24.558824:1-291 [pilon] NODE_4510_length_660_cov_54.250464:1-660 log: [pilon] frags shovill.bam: coverage 101 [pilon] Total Reads: 661, Coverage: 101, minDepth: 25 [pilon] Confirmed 598 of 660 bases (90.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4510_length_660_cov_54.250464:1-660 [pilon] Processing NODE_6195_length_524_cov_32.498759:1-524 [pilon] NODE_13547_length_243_cov_17.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13547_length_243_cov_17.959016:1-243 [pilon] Processing NODE_2405_length_990_cov_8.246260:1-990 [pilon] NODE_10802_length_293_cov_23.587209:1-293 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 67, Coverage: 6, minDepth: 5 [pilon] Confirmed 146 of 293 bases (49.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10802_length_293_cov_23.587209:1-293 [pilon] Processing NODE_6374_length_512_cov_10.076726:1-512 [pilon] NODE_375_length_2087_cov_2.901322:1-2087 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 165, Coverage: 10, minDepth: 5 [pilon] Confirmed 1901 of 2087 bases (91.09%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_375_length_2087_cov_2.901322:1-2087 [pilon] Processing NODE_1175_length_1408_cov_15.536952:1-1408 [pilon] NODE_8462_length_396_cov_14.181818:1-396 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 78, Coverage: 8, minDepth: 5 [pilon] Confirmed 241 of 396 bases (60.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8462_length_396_cov_14.181818:1-396 [pilon] Processing NODE_13643_length_243_cov_17.098361:1-243 [pilon] NODE_12798_length_243_cov_25.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12798_length_243_cov_25.040984:1-243 [pilon] Processing NODE_4568_length_656_cov_7.327103:1-656 [pilon] NODE_1602_length_1216_cov_26.721461:1-1216 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 828, Coverage: 79, minDepth: 20 [pilon] Confirmed 1024 of 1216 bases (84.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1602_length_1216_cov_26.721461:1-1216 [pilon] Processing NODE_5374_length_586_cov_13.415054:1-586 [pilon] NODE_6569_length_499_cov_1.005291:1-499 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 161 of 499 bases (32.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6569_length_499_cov_1.005291:1-499 [pilon] Processing NODE_8535_length_392_cov_26.188192:1-392 [pilon] NODE_6348_length_514_cov_1.862595:1-514 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 298 of 514 bases (57.98%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6348_length_514_cov_1.862595:1-514 [pilon] Processing NODE_5127_length_608_cov_1.640657:1-608 [pilon] NODE_1127_length_1426_cov_18.590038:1-1426 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 575, Coverage: 35, minDepth: 9 [pilon] Confirmed 1092 of 1426 bases (76.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1127_length_1426_cov_18.590038:1-1426 [pilon] Processing NODE_6189_length_525_cov_12.547030:1-525 [pilon] NODE_3797_length_741_cov_13.251613:1-741 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 191, Coverage: 21, minDepth: 5 [pilon] Confirmed 676 of 741 bases (91.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3797_length_741_cov_13.251613:1-741 [pilon] Processing NODE_844_length_1602_cov_2.686023:1-1602 [pilon] NODE_4986_length_619_cov_24.140562:1-619 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 293, Coverage: 32, minDepth: 8 [pilon] Confirmed 489 of 619 bases (79.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4986_length_619_cov_24.140562:1-619 [pilon] Processing NODE_679_length_1720_cov_15.195747:1-1720 [pilon] NODE_7418_length_447_cov_16.533742:1-447 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 113, Coverage: 14, minDepth: 5 [pilon] Confirmed 331 of 447 bases (74.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7418_length_447_cov_16.533742:1-447 [pilon] Processing NODE_311_length_2218_cov_27.407248:1-2218 [pilon] NODE_14052_length_243_cov_13.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14052_length_243_cov_13.819672:1-243 [pilon] Processing NODE_11603_length_260_cov_12.151079:1-260 [pilon] NODE_4649_length_648_cov_8.884250:1-648 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 124, Coverage: 25, minDepth: 6 [pilon] Confirmed 555 of 648 bases (85.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4649_length_648_cov_8.884250:1-648 [pilon] Processing NODE_11119_length_279_cov_14.974684:1-279 [pilon] NODE_12503_length_243_cov_29.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12503_length_243_cov_29.040984:1-243 [pilon] Processing NODE_11248_length_273_cov_24.743421:1-273 [pilon] NODE_4420_length_669_cov_15.145985:1-669 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 189, Coverage: 26, minDepth: 7 [pilon] Confirmed 530 of 669 bases (79.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4420_length_669_cov_15.145985:1-669 [pilon] Processing NODE_7115_length_465_cov_6.700581:1-465 [pilon] NODE_2299_length_1011_cov_15.803371:1-1011 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 311, Coverage: 25, minDepth: 6 [pilon] Confirmed 917 of 1011 bases (90.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2299_length_1011_cov_15.803371:1-1011 [pilon] Processing NODE_11468_length_264_cov_22.160839:1-264 [pilon] NODE_10472_length_306_cov_10.729730:1-306 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 43, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10472_length_306_cov_10.729730:1-306 [pilon] Processing NODE_373_length_2090_cov_13.621127:1-2090 [pilon] NODE_764_length_1651_cov_19.264706:1-1651 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 706, Coverage: 48, minDepth: 12 [pilon] Confirmed 987 of 1651 bases (59.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_764_length_1651_cov_19.264706:1-1651 [pilon] Processing NODE_7125_length_464_cov_25.903790:1-464 [pilon] NODE_12341_length_243_cov_32.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12341_length_243_cov_32.442623:1-243 [pilon] Processing NODE_9590_length_342_cov_17.244344:1-342 [pilon] NODE_1512_length_1252_cov_27.044209:1-1252 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 763, Coverage: 48, minDepth: 12 [pilon] Confirmed 1135 of 1252 bases (90.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1512_length_1252_cov_27.044209:1-1252 [pilon] Processing NODE_8195_length_408_cov_25.801394:1-408 [pilon] NODE_5988_length_542_cov_10.220903:1-542 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 146, Coverage: 18, minDepth: 5 [pilon] Confirmed 341 of 542 bases (62.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5988_length_542_cov_10.220903:1-542 [pilon] Processing NODE_3420_length_795_cov_33.456973:1-795 [pilon] NODE_4482_length_663_cov_14.440959:1-663 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 187, Coverage: 24, minDepth: 6 [pilon] Confirmed 542 of 663 bases (81.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4482_length_663_cov_14.440959:1-663 [pilon] Processing NODE_7002_length_471_cov_19.882857:1-471 [pilon] NODE_9383_length_351_cov_14.860870:1-351 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 70, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 351 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9383_length_351_cov_14.860870:1-351 [pilon] Processing NODE_2107_length_1057_cov_7.521368:1-1057 [pilon] NODE_670_length_1729_cov_2.188433:1-1729 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 100, Coverage: 7, minDepth: 5 [pilon] Confirmed 1192 of 1729 bases (68.94%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_670_length_1729_cov_2.188433:1-1729 [pilon] Processing NODE_9205_length_357_cov_19.478814:1-357 [pilon] NODE_8297_length_405_cov_1.985915:1-405 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 19, Coverage: 6, minDepth: 5 [pilon] Confirmed 317 of 405 bases (78.27%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8297_length_405_cov_1.985915:1-405 [pilon] Processing NODE_9513_length_345_cov_20.209821:1-345 [pilon] NODE_7410_length_447_cov_27.840491:1-447 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 227, Coverage: 37, minDepth: 9 [pilon] Confirmed 388 of 447 bases (86.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7410_length_447_cov_27.840491:1-447 [pilon] Processing NODE_11075_length_280_cov_17.364780:1-280 [pilon] NODE_12402_length_243_cov_30.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12402_length_243_cov_30.852459:1-243 [pilon] Processing NODE_4976_length_620_cov_16.693387:1-620 [pilon] NODE_6195_length_524_cov_32.498759:1-524 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 324, Coverage: 42, minDepth: 11 [pilon] Confirmed 469 of 524 bases (89.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6195_length_524_cov_32.498759:1-524 [pilon] Processing NODE_5920_length_546_cov_15.637647:1-546 [pilon] NODE_10825_length_291_cov_24.558824:1-291 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 83, Coverage: 7, minDepth: 5 [pilon] Confirmed 190 of 291 bases (65.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10825_length_291_cov_24.558824:1-291 [pilon] Processing NODE_11366_length_269_cov_9.716216:1-269 [pilon] NODE_6374_length_512_cov_10.076726:1-512 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 102, Coverage: 11, minDepth: 5 [pilon] Confirmed 442 of 512 bases (86.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6374_length_512_cov_10.076726:1-512 [pilon] Processing NODE_9225_length_357_cov_11.228814:1-357 [pilon] NODE_2405_length_990_cov_8.246260:1-990 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 169, Coverage: 15, minDepth: 5 [pilon] Confirmed 717 of 990 bases (72.42%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2405_length_990_cov_8.246260:1-990 [pilon] Processing NODE_14903_length_243_cov_6.688525:1-243 [pilon] NODE_13643_length_243_cov_17.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13643_length_243_cov_17.098361:1-243 [pilon] Processing NODE_14401_length_243_cov_11.073770:1-243 [pilon] NODE_5374_length_586_cov_13.415054:1-586 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 156, Coverage: 17, minDepth: 5 [pilon] Confirmed 354 of 586 bases (60.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5374_length_586_cov_13.415054:1-586 [pilon] Processing NODE_8767_length_378_cov_40.622568:1-378 [pilon] NODE_8535_length_392_cov_26.188192:1-392 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 148, Coverage: 20, minDepth: 5 [pilon] Confirmed 359 of 392 bases (91.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8535_length_392_cov_26.188192:1-392 [pilon] Processing NODE_6053_length_536_cov_1.204819:1-536 [pilon] NODE_1175_length_1408_cov_15.536952:1-1408 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 556, Coverage: 46, minDepth: 12 [pilon] Confirmed 1319 of 1408 bases (93.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1175_length_1408_cov_15.536952:1-1408 [pilon] Processing NODE_8484_length_395_cov_10.503650:1-395 [pilon] NODE_7115_length_465_cov_6.700581:1-465 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 43, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 465 bases (27.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7115_length_465_cov_6.700581:1-465 [pilon] Processing NODE_10345_length_312_cov_8.073298:1-312 [pilon] NODE_5127_length_608_cov_1.640657:1-608 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 19, Coverage: 4, minDepth: 5 [pilon] Confirmed 222 of 608 bases (36.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5127_length_608_cov_1.640657:1-608 [pilon] Processing NODE_8516_length_393_cov_14.518382:1-393 [pilon] NODE_11119_length_279_cov_14.974684:1-279 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 45, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 279 bases (46.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11119_length_279_cov_14.974684:1-279 [pilon] Processing NODE_12560_length_243_cov_28.139344:1-243 [pilon] NODE_844_length_1602_cov_2.686023:1-1602 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 114, Coverage: 9, minDepth: 5 [pilon] Confirmed 1170 of 1602 bases (73.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_844_length_1602_cov_2.686023:1-1602 [pilon] NODE_11603_length_260_cov_12.151079:1-260 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 35, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 260 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11603_length_260_cov_12.151079:1-260 [pilon] Processing NODE_12571_length_243_cov_28.016393:1-243 [pilon] Processing NODE_5382_length_585_cov_38.053879:1-585 [pilon] NODE_11468_length_264_cov_22.160839:1-264 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 76, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11468_length_264_cov_22.160839:1-264 [pilon] Processing NODE_3477_length_788_cov_8.541229:1-788 [pilon] NODE_7125_length_464_cov_25.903790:1-464 log: [pilon] NODE_9590_length_342_cov_17.244344:1-342 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 76, Coverage: 5, minDepth: 5 [pilon] Confirmed 170 of 342 bases (49.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9590_length_342_cov_17.244344:1-342 [pilon] Processing NODE_14980_length_243_cov_5.713115:1-243 [pilon] NODE_11248_length_273_cov_24.743421:1-273 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 85, Coverage: 9, minDepth: 5 [pilon] Confirmed 207 of 273 bases (75.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11248_length_273_cov_24.743421:1-273 [pilon] Processing NODE_12120_length_243_cov_43.729508:1-243 [pilon] NODE_6189_length_525_cov_12.547030:1-525 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 112, Coverage: 15, minDepth: 5 [pilon] Confirmed 388 of 525 bases (73.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6189_length_525_cov_12.547030:1-525 [pilon] Processing NODE_7280_length_456_cov_0.800000:1-456 [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 210, Coverage: 23, minDepth: 6 [pilon] Confirmed 336 of 464 bases (72.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7125_length_464_cov_25.903790:1-464 [pilon] Processing NODE_8977_length_367_cov_58.971545:1-367 [pilon] NODE_4568_length_656_cov_7.327103:1-656 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 128, Coverage: 15, minDepth: 5 [pilon] Confirmed 419 of 656 bases (63.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4568_length_656_cov_7.327103:1-656 [pilon] Processing NODE_2510_length_965_cov_20.966825:1-965 [pilon] NODE_8195_length_408_cov_25.801394:1-408 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 190, Coverage: 10, minDepth: 5 [pilon] Confirmed 167 of 408 bases (40.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8195_length_408_cov_25.801394:1-408 [pilon] Processing NODE_6748_length_486_cov_35.950685:1-486 [pilon] NODE_3420_length_795_cov_33.456973:1-795 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 511, Coverage: 52, minDepth: 13 [pilon] Confirmed 643 of 795 bases (80.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3420_length_795_cov_33.456973:1-795 [pilon] Processing NODE_11976_length_246_cov_29.760000:1-246 [pilon] NODE_679_length_1720_cov_15.195747:1-1720 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 613, Coverage: 40, minDepth: 10 [pilon] Confirmed 1558 of 1720 bases (90.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_679_length_1720_cov_15.195747:1-1720 [pilon] Processing NODE_7236_length_458_cov_21.258160:1-458 [pilon] NODE_373_length_2090_cov_13.621127:1-2090 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 890, Coverage: 51, minDepth: 13 [pilon] Confirmed 1439 of 2090 bases (68.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_373_length_2090_cov_13.621127:1-2090 [pilon] Processing NODE_1806_length_1145_cov_14.747070:1-1145 [pilon] NODE_7002_length_471_cov_19.882857:1-471 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 159, Coverage: 24, minDepth: 6 [pilon] Confirmed 356 of 471 bases (75.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7002_length_471_cov_19.882857:1-471 [pilon] Processing NODE_3552_length_777_cov_7.842988:1-777 [pilon] NODE_311_length_2218_cov_27.407248:1-2218 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 1305, Coverage: 61, minDepth: 15 [pilon] Confirmed 1987 of 2218 bases (89.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_311_length_2218_cov_27.407248:1-2218 [pilon] Processing NODE_2365_length_998_cov_28.718358:1-998 [pilon] NODE_9205_length_357_cov_19.478814:1-357 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 111, Coverage: 17, minDepth: 5 [pilon] Confirmed 304 of 357 bases (85.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9205_length_357_cov_19.478814:1-357 [pilon] Processing NODE_6677_length_492_cov_16.013477:1-492 [pilon] NODE_9513_length_345_cov_20.209821:1-345 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 102, Coverage: 12, minDepth: 5 [pilon] Confirmed 236 of 345 bases (68.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9513_length_345_cov_20.209821:1-345 [pilon] Processing NODE_8905_length_371_cov_56.540000:1-371 [pilon] NODE_11366_length_269_cov_9.716216:1-269 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 30, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 269 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11366_length_269_cov_9.716216:1-269 [pilon] Processing NODE_3649_length_762_cov_3.265211:1-762 [pilon] NODE_2107_length_1057_cov_7.521368:1-1057 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 172, Coverage: 21, minDepth: 5 [pilon] Confirmed 959 of 1057 bases (90.73%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2107_length_1057_cov_7.521368:1-1057 [pilon] Processing NODE_11707_length_255_cov_31.447761:1-255 [pilon] NODE_11075_length_280_cov_17.364780:1-280 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 58, Coverage: 10, minDepth: 5 [pilon] Confirmed 220 of 280 bases (78.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11075_length_280_cov_17.364780:1-280 [pilon] Processing NODE_5554_length_574_cov_1.251656:1-574 [pilon] NODE_4976_length_620_cov_16.693387:1-620 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 216, Coverage: 28, minDepth: 7 [pilon] Confirmed 396 of 620 bases (63.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4976_length_620_cov_16.693387:1-620 [pilon] Processing NODE_2230_length_1026_cov_1.723757:1-1026 [pilon] NODE_5920_length_546_cov_15.637647:1-546 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 151, Coverage: 30, minDepth: 8 [pilon] Confirmed 443 of 546 bases (81.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5920_length_546_cov_15.637647:1-546 [pilon] Processing NODE_3839_length_735_cov_30.819218:1-735 [pilon] NODE_14903_length_243_cov_6.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14903_length_243_cov_6.688525:1-243 [pilon] Processing NODE_14464_length_243_cov_10.549180:1-243 [pilon] NODE_9225_length_357_cov_11.228814:1-357 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 64, Coverage: 8, minDepth: 5 [pilon] Confirmed 236 of 357 bases (66.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9225_length_357_cov_11.228814:1-357 [pilon] Processing NODE_3279_length_818_cov_21.416069:1-818 [pilon] NODE_14401_length_243_cov_11.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14401_length_243_cov_11.073770:1-243 [pilon] Processing NODE_14649_length_243_cov_9.040984:1-243 [pilon] NODE_6053_length_536_cov_1.204819:1-536 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 131 of 536 bases (24.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6053_length_536_cov_1.204819:1-536 [pilon] Processing NODE_9737_length_336_cov_26.455814:1-336 [pilon] NODE_10345_length_312_cov_8.073298:1-312 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 312 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10345_length_312_cov_8.073298:1-312 [pilon] Processing NODE_4428_length_668_cov_24.552102:1-668 [pilon] NODE_8767_length_378_cov_40.622568:1-378 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 231, Coverage: 39, minDepth: 10 [pilon] Confirmed 334 of 378 bases (88.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8767_length_378_cov_40.622568:1-378 [pilon] Processing NODE_9245_length_356_cov_15.029787:1-356 [pilon] NODE_8484_length_395_cov_10.503650:1-395 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 62, Coverage: 13, minDepth: 5 [pilon] Confirmed 306 of 395 bases (77.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8484_length_395_cov_10.503650:1-395 [pilon] Processing NODE_2385_length_993_cov_2.292431:1-993 [pilon] NODE_12560_length_243_cov_28.139344:1-243 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 76, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12560_length_243_cov_28.139344:1-243 [pilon] Processing NODE_11837_length_252_cov_11.442748:1-252 [pilon] NODE_8516_length_393_cov_14.518382:1-393 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 94, Coverage: 4, minDepth: 5 [pilon] Confirmed 155 of 393 bases (39.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8516_length_393_cov_14.518382:1-393 [pilon] Processing NODE_14625_length_243_cov_9.229508:1-243 [pilon] NODE_12571_length_243_cov_28.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12571_length_243_cov_28.016393:1-243 [pilon] NODE_7280_length_456_cov_0.800000:1-456 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 456 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7280_length_456_cov_0.800000:1-456 [pilon] Processing NODE_8681_length_383_cov_57.965649:1-383 [pilon] Processing NODE_11034_length_282_cov_16.645963:1-282 [pilon] NODE_3552_length_777_cov_7.842988:1-777 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 122, Coverage: 13, minDepth: 5 [pilon] Confirmed 548 of 777 bases (70.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3552_length_777_cov_7.842988:1-777 [pilon] Processing NODE_9495_length_345_cov_36.991071:1-345 [pilon] NODE_14980_length_243_cov_5.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14980_length_243_cov_5.713115:1-243 [pilon] Processing NODE_13453_length_243_cov_18.811475:1-243 [pilon] NODE_5382_length_585_cov_38.053879:1-585 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 450, Coverage: 31, minDepth: 8 [pilon] Confirmed 351 of 585 bases (60.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5382_length_585_cov_38.053879:1-585 [pilon] Processing NODE_15185_length_166_cov_34.333333:1-166 [pilon] NODE_3477_length_788_cov_8.541229:1-788 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 159, Coverage: 11, minDepth: 5 [pilon] Confirmed 638 of 788 bases (80.96%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3477_length_788_cov_8.541229:1-788 [pilon] Processing NODE_5170_length_604_cov_1.614907:1-604 [pilon] NODE_8977_length_367_cov_58.971545:1-367 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 302, Coverage: 60, minDepth: 15 [pilon] Confirmed 317 of 367 bases (86.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8977_length_367_cov_58.971545:1-367 [pilon] Processing NODE_370_length_2095_cov_24.631206:1-2095 [pilon] NODE_11976_length_246_cov_29.760000:1-246 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 66, Coverage: 4, minDepth: 5 [pilon] Confirmed 84 of 246 bases (34.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11976_length_246_cov_29.760000:1-246 [pilon] Processing NODE_7689_length_433_cov_1.022436:1-433 [pilon] NODE_6748_length_486_cov_35.950685:1-486 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 251, Coverage: 22, minDepth: 6 [pilon] Confirmed 346 of 486 bases (71.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6748_length_486_cov_35.950685:1-486 [pilon] Processing NODE_1413_length_1294_cov_17.503836:1-1294 [pilon] NODE_12120_length_243_cov_43.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 79, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12120_length_243_cov_43.729508:1-243 [pilon] Processing NODE_4235_length_689_cov_8.015845:1-689 [pilon] NODE_2510_length_965_cov_20.966825:1-965 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 431, Coverage: 47, minDepth: 12 [pilon] Confirmed 866 of 965 bases (89.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2510_length_965_cov_20.966825:1-965 [pilon] Processing NODE_14208_length_243_cov_12.540984:1-243 [pilon] NODE_1806_length_1145_cov_14.747070:1-1145 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 390, Coverage: 37, minDepth: 9 [pilon] Confirmed 955 of 1145 bases (83.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1806_length_1145_cov_14.747070:1-1145 [pilon] Processing NODE_5701_length_563_cov_38.581448:1-563 [pilon] NODE_7236_length_458_cov_21.258160:1-458 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 153, Coverage: 18, minDepth: 5 [pilon] Confirmed 349 of 458 bases (76.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7236_length_458_cov_21.258160:1-458 [pilon] Processing NODE_14528_length_243_cov_10.032787:1-243 [pilon] NODE_8905_length_371_cov_56.540000:1-371 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 342, Coverage: 63, minDepth: 16 [pilon] Confirmed 331 of 371 bases (89.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8905_length_371_cov_56.540000:1-371 [pilon] Processing NODE_6770_length_485_cov_8.357143:1-485 [pilon] NODE_2365_length_998_cov_28.718358:1-998 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 645, Coverage: 42, minDepth: 11 [pilon] Confirmed 872 of 998 bases (87.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2365_length_998_cov_28.718358:1-998 [pilon] Processing NODE_6068_length_534_cov_20.958838:1-534 [pilon] NODE_3649_length_762_cov_3.265211:1-762 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 52, Coverage: 9, minDepth: 5 [pilon] Confirmed 420 of 762 bases (55.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3649_length_762_cov_3.265211:1-762 [pilon] Processing NODE_2627_length_942_cov_1.395859:1-942 [pilon] NODE_6677_length_492_cov_16.013477:1-492 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 132, Coverage: 18, minDepth: 5 [pilon] Confirmed 339 of 492 bases (68.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6677_length_492_cov_16.013477:1-492 [pilon] Processing NODE_4177_length_696_cov_17.612174:1-696 [pilon] NODE_5554_length_574_cov_1.251656:1-574 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 216 of 574 bases (37.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5554_length_574_cov_1.251656:1-574 [pilon] Processing NODE_11430_length_267_cov_5.746575:1-267 [pilon] NODE_11707_length_255_cov_31.447761:1-255 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 99, Coverage: 11, minDepth: 5 [pilon] Confirmed 227 of 255 bases (89.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11707_length_255_cov_31.447761:1-255 [pilon] Processing NODE_6096_length_532_cov_26.659367:1-532 [pilon] NODE_2230_length_1026_cov_1.723757:1-1026 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 46, Coverage: 6, minDepth: 5 [pilon] Confirmed 425 of 1026 bases (41.42%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2230_length_1026_cov_1.723757:1-1026 [pilon] Processing NODE_9510_length_345_cov_21.754464:1-345 [pilon] NODE_3839_length_735_cov_30.819218:1-735 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 497, Coverage: 45, minDepth: 11 [pilon] Confirmed 583 of 735 bases (79.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3839_length_735_cov_30.819218:1-735 [pilon] Processing NODE_4514_length_660_cov_20.497217:1-660 [pilon] NODE_14464_length_243_cov_10.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14464_length_243_cov_10.549180:1-243 [pilon] Processing NODE_9320_length_354_cov_5.283262:1-354 [pilon] NODE_3279_length_818_cov_21.416069:1-818 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 341, Coverage: 33, minDepth: 8 [pilon] Confirmed 768 of 818 bases (93.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3279_length_818_cov_21.416069:1-818 [pilon] Processing NODE_8294_length_405_cov_6.693662:1-405 [pilon] NODE_14649_length_243_cov_9.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14649_length_243_cov_9.040984:1-243 [pilon] Processing NODE_7242_length_458_cov_0.931751:1-458 [pilon] NODE_11837_length_252_cov_11.442748:1-252 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 33, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11837_length_252_cov_11.442748:1-252 [pilon] Processing NODE_7275_length_456_cov_7.364179:1-456 [pilon] NODE_7689_length_433_cov_1.022436:1-433 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 131 of 433 bases (30.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7689_length_433_cov_1.022436:1-433 [pilon] Processing NODE_12326_length_243_cov_32.631148:1-243 [pilon] NODE_11034_length_282_cov_16.645963:1-282 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 62, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 282 bases (46.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_9737_length_336_cov_26.455814:1-336 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 116, Coverage: 4, minDepth: 5 [pilon] Confirmed 144 of 336 bases (42.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11034_length_282_cov_16.645963:1-282 [pilon] Finished processing NODE_9737_length_336_cov_26.455814:1-336 [pilon] Processing NODE_11093_length_279_cov_30.424051:1-279 [pilon] Processing NODE_14418_length_243_cov_10.909836:1-243 [pilon] NODE_4428_length_668_cov_24.552102:1-668 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 319, Coverage: 47, minDepth: 12 [pilon] Confirmed 489 of 668 bases (73.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4428_length_668_cov_24.552102:1-668 [pilon] NODE_9245_length_356_cov_15.029787:1-356 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 73, Coverage: 2, minDepth: 5 [pilon] Confirmed 108 of 356 bases (30.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9245_length_356_cov_15.029787:1-356 [pilon] Processing NODE_4384_length_673_cov_1.599638:1-673 [pilon] NODE_14625_length_243_cov_9.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14625_length_243_cov_9.229508:1-243 [pilon] Processing NODE_7102_length_465_cov_12.377907:1-465 [pilon] NODE_2385_length_993_cov_2.292431:1-993 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 55, Coverage: 7, minDepth: 5 [pilon] Confirmed 537 of 993 bases (54.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2385_length_993_cov_2.292431:1-993 [pilon] Processing NODE_10250_length_315_cov_12.520619:1-315 [pilon] Processing NODE_12634_length_243_cov_27.090164:1-243 [pilon] NODE_8681_length_383_cov_57.965649:1-383 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 311, Coverage: 67, minDepth: 17 [pilon] Confirmed 314 of 383 bases (81.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8681_length_383_cov_57.965649:1-383 [pilon] Processing NODE_13233_length_243_cov_20.803279:1-243 [pilon] NODE_13453_length_243_cov_18.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13453_length_243_cov_18.811475:1-243 [pilon] Processing NODE_14527_length_243_cov_10.040984:1-243 [pilon] NODE_14208_length_243_cov_12.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14208_length_243_cov_12.540984:1-243 [pilon] Processing NODE_10554_length_303_cov_10.126374:1-303 [pilon] NODE_15185_length_166_cov_34.333333:1-166 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 166 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15185_length_166_cov_34.333333:1-166 [pilon] Processing NODE_2357_length_1000_cov_1.386803:1-1000 [pilon] NODE_5170_length_604_cov_1.614907:1-604 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 20, Coverage: 3, minDepth: 5 [pilon] Confirmed 249 of 604 bases (41.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5170_length_604_cov_1.614907:1-604 [pilon] Processing NODE_9498_length_345_cov_31.205357:1-345 [pilon] NODE_14528_length_243_cov_10.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14528_length_243_cov_10.032787:1-243 [pilon] Processing NODE_4407_length_671_cov_1.123636:1-671 [pilon] NODE_9495_length_345_cov_36.991071:1-345 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 195, Coverage: 5, minDepth: 5 [pilon] Confirmed 143 of 345 bases (41.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9495_length_345_cov_36.991071:1-345 [pilon] Processing NODE_11483_length_264_cov_15.524476:1-264 [pilon] NODE_4235_length_689_cov_8.015845:1-689 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 111, Coverage: 19, minDepth: 5 [pilon] Confirmed 615 of 689 bases (89.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4235_length_689_cov_8.015845:1-689 [pilon] Processing NODE_7137_length_463_cov_19.783626:1-463 [pilon] NODE_5701_length_563_cov_38.581448:1-563 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 462, Coverage: 74, minDepth: 19 [pilon] Confirmed 437 of 563 bases (77.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5701_length_563_cov_38.581448:1-563 [pilon] Processing NODE_13905_length_243_cov_14.852459:1-243 [pilon] NODE_1413_length_1294_cov_17.503836:1-1294 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 516, Coverage: 30, minDepth: 8 [pilon] Confirmed 999 of 1294 bases (77.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1413_length_1294_cov_17.503836:1-1294 [pilon] Processing NODE_11772_length_254_cov_32.969925:1-254 [pilon] NODE_6068_length_534_cov_20.958838:1-534 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 182, Coverage: 24, minDepth: 6 [pilon] Confirmed 447 of 534 bases (83.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6068_length_534_cov_20.958838:1-534 [pilon] Processing NODE_936_length_1537_cov_17.875000:1-1537 [pilon] NODE_370_length_2095_cov_24.631206:1-2095 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 1190, Coverage: 41, minDepth: 10 [pilon] Confirmed 1978 of 2095 bases (94.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_370_length_2095_cov_24.631206:1-2095 [pilon] Processing NODE_11506_length_263_cov_65.000000:1-263 [pilon] NODE_6770_length_485_cov_8.357143:1-485 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 83, Coverage: 6, minDepth: 5 [pilon] Confirmed 278 of 485 bases (57.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6770_length_485_cov_8.357143:1-485 [pilon] Processing NODE_3635_length_763_cov_28.331776:1-763 [pilon] NODE_2627_length_942_cov_1.395859:1-942 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 408 of 942 bases (43.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2627_length_942_cov_1.395859:1-942 [pilon] Processing NODE_13655_length_243_cov_16.950820:1-243 [pilon] NODE_4177_length_696_cov_17.612174:1-696 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 241, Coverage: 26, minDepth: 7 [pilon] Confirmed 560 of 696 bases (80.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4177_length_696_cov_17.612174:1-696 [pilon] Processing NODE_11717_length_255_cov_27.425373:1-255 [pilon] NODE_9510_length_345_cov_21.754464:1-345 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 96, Coverage: 5, minDepth: 5 [pilon] Confirmed 141 of 345 bases (40.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9510_length_345_cov_21.754464:1-345 [pilon] Processing NODE_11175_length_276_cov_27.883871:1-276 [pilon] NODE_6096_length_532_cov_26.659367:1-532 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 274, Coverage: 40, minDepth: 10 [pilon] Confirmed 329 of 532 bases (61.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6096_length_532_cov_26.659367:1-532 [pilon] Processing NODE_3498_length_783_cov_30.090634:1-783 [pilon] NODE_11430_length_267_cov_5.746575:1-267 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 23, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11430_length_267_cov_5.746575:1-267 [pilon] Processing NODE_3019_length_870_cov_3.129506:1-870 [pilon] NODE_4514_length_660_cov_20.497217:1-660 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 291, Coverage: 28, minDepth: 7 [pilon] Confirmed 478 of 660 bases (72.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4514_length_660_cov_20.497217:1-660 [pilon] Processing NODE_10600_length_301_cov_5.072222:1-301 [pilon] NODE_9320_length_354_cov_5.283262:1-354 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 29, Coverage: 3, minDepth: 5 [pilon] Confirmed 115 of 354 bases (32.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9320_length_354_cov_5.283262:1-354 [pilon] Processing NODE_12203_length_243_cov_36.622951:1-243 [pilon] NODE_8294_length_405_cov_6.693662:1-405 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 40, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 405 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8294_length_405_cov_6.693662:1-405 [pilon] Processing NODE_7308_length_453_cov_19.936747:1-453 [pilon] NODE_11093_length_279_cov_30.424051:1-279 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 96, Coverage: 5, minDepth: 5 [pilon] Confirmed 150 of 279 bases (53.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11093_length_279_cov_30.424051:1-279 [pilon] Processing NODE_11067_length_280_cov_25.289308:1-280 [pilon] NODE_7275_length_456_cov_7.364179:1-456 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 57, Coverage: 6, minDepth: 5 [pilon] Confirmed 287 of 456 bases (62.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7275_length_456_cov_7.364179:1-456 [pilon] Processing NODE_9347_length_352_cov_17.619048:1-352 [pilon] NODE_14418_length_243_cov_10.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14418_length_243_cov_10.909836:1-243 [pilon] Processing NODE_10327_length_312_cov_19.732984:1-312 [pilon] NODE_7102_length_465_cov_12.377907:1-465 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 101, Coverage: 13, minDepth: 5 [pilon] Confirmed 317 of 465 bases (68.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7102_length_465_cov_12.377907:1-465 [pilon] Processing NODE_253_length_2327_cov_2.927471:1-2327 [pilon] NODE_7242_length_458_cov_0.931751:1-458 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 458 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7242_length_458_cov_0.931751:1-458 [pilon] Processing NODE_9815_length_333_cov_24.584906:1-333 [pilon] NODE_4384_length_673_cov_1.599638:1-673 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 36, Coverage: 4, minDepth: 5 [pilon] Confirmed 387 of 673 bases (57.50%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4384_length_673_cov_1.599638:1-673 [pilon] Processing NODE_3716_length_753_cov_3.012658:1-753 [pilon] NODE_12326_length_243_cov_32.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12326_length_243_cov_32.631148:1-243 [pilon] Processing NODE_5833_length_553_cov_3.372685:1-553 [pilon] NODE_7137_length_463_cov_19.783626:1-463 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 135, Coverage: 18, minDepth: 5 [pilon] Confirmed 289 of 463 bases (62.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7137_length_463_cov_19.783626:1-463 [pilon] Processing NODE_14962_length_243_cov_5.959016:1-243 [pilon] NODE_11506_length_263_cov_65.000000:1-263 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 222, Coverage: 16, minDepth: 5 [pilon] Confirmed 241 of 263 bases (91.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11506_length_263_cov_65.000000:1-263 [pilon] Processing NODE_8745_length_380_cov_33.154440:1-380 [pilon] NODE_12634_length_243_cov_27.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12634_length_243_cov_27.090164:1-243 [pilon] Processing NODE_4637_length_649_cov_1.714015:1-649 [pilon] NODE_10250_length_315_cov_12.520619:1-315 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 57, Coverage: 7, minDepth: 5 [pilon] Confirmed 213 of 315 bases (67.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10250_length_315_cov_12.520619:1-315 [pilon] Processing NODE_6071_length_534_cov_15.600484:1-534 [pilon] NODE_14527_length_243_cov_10.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14527_length_243_cov_10.040984:1-243 [pilon] Processing NODE_13297_length_243_cov_20.262295:1-243 [pilon] NODE_13233_length_243_cov_20.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13233_length_243_cov_20.803279:1-243 [pilon] Processing NODE_9929_length_328_cov_33.106280:1-328 [pilon] NODE_9498_length_345_cov_31.205357:1-345 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 150, Coverage: 5, minDepth: 5 [pilon] Confirmed 134 of 345 bases (38.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9498_length_345_cov_31.205357:1-345 [pilon] Processing NODE_14654_length_243_cov_8.975410:1-243 [pilon] NODE_2357_length_1000_cov_1.386803:1-1000 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 38, Coverage: 4, minDepth: 5 [pilon] Confirmed 587 of 1000 bases (58.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2357_length_1000_cov_1.386803:1-1000 [pilon] Processing NODE_14596_length_243_cov_9.426230:1-243 [pilon] NODE_936_length_1537_cov_17.875000:1-1537 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 692, Coverage: 58, minDepth: 15 [pilon] Confirmed 1184 of 1537 bases (77.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_936_length_1537_cov_17.875000:1-1537 [pilon] Processing NODE_13702_length_243_cov_16.401639:1-243 [pilon] NODE_4407_length_671_cov_1.123636:1-671 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 227 of 671 bases (33.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4407_length_671_cov_1.123636:1-671 [pilon] Processing NODE_2927_length_887_cov_28.637076:1-887 [pilon] NODE_10554_length_303_cov_10.126374:1-303 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 37, Coverage: 6, minDepth: 5 [pilon] Confirmed 193 of 303 bases (63.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10554_length_303_cov_10.126374:1-303 [pilon] Processing NODE_3969_length_718_cov_6.293132:1-718 [pilon] NODE_13905_length_243_cov_14.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13905_length_243_cov_14.852459:1-243 [pilon] Processing NODE_6075_length_534_cov_7.479419:1-534 [pilon] NODE_3635_length_763_cov_28.331776:1-763 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 522, Coverage: 34, minDepth: 9 [pilon] Confirmed 506 of 763 bases (66.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3635_length_763_cov_28.331776:1-763 [pilon] Processing NODE_5470_length_579_cov_24.694323:1-579 [pilon] NODE_11483_length_264_cov_15.524476:1-264 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 45, Coverage: 6, minDepth: 5 [pilon] Confirmed 152 of 264 bases (57.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11483_length_264_cov_15.524476:1-264 [pilon] Processing NODE_12094_length_244_cov_11.934959:1-244 [pilon] NODE_11772_length_254_cov_32.969925:1-254 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 94, Coverage: 7, minDepth: 5 [pilon] Confirmed 176 of 254 bases (69.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11772_length_254_cov_32.969925:1-254 [pilon] Processing NODE_889_length_1569_cov_1.681630:1-1569 [pilon] NODE_11717_length_255_cov_27.425373:1-255 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 97, Coverage: 10, minDepth: 5 [pilon] Confirmed 182 of 255 bases (71.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11717_length_255_cov_27.425373:1-255 [pilon] Processing NODE_6039_length_537_cov_19.569712:1-537 [pilon] NODE_11175_length_276_cov_27.883871:1-276 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 84, Coverage: 3, minDepth: 5 [pilon] Confirmed 70 of 276 bases (25.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11175_length_276_cov_27.883871:1-276 [pilon] Processing NODE_5970_length_543_cov_22.907583:1-543 [pilon] NODE_13655_length_243_cov_16.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13655_length_243_cov_16.950820:1-243 [pilon] Processing NODE_10269_length_315_cov_6.855670:1-315 [pilon] NODE_11067_length_280_cov_25.289308:1-280 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 69, Coverage: 7, minDepth: 5 [pilon] Confirmed 191 of 280 bases (68.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11067_length_280_cov_25.289308:1-280 [pilon] Processing NODE_5406_length_584_cov_1.129590:1-584 [pilon] NODE_3019_length_870_cov_3.129506:1-870 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 69, Coverage: 10, minDepth: 5 [pilon] Confirmed 615 of 870 bases (70.69%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3019_length_870_cov_3.129506:1-870 [pilon] Processing NODE_10018_length_324_cov_24.660099:1-324 [pilon] NODE_8745_length_380_cov_33.154440:1-380 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 196, Coverage: 28, minDepth: 7 [pilon] Confirmed 351 of 380 bases (92.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8745_length_380_cov_33.154440:1-380 [pilon] Processing NODE_8932_length_369_cov_23.471774:1-369 [pilon] NODE_13702_length_243_cov_16.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13702_length_243_cov_16.401639:1-243 [pilon] Processing NODE_2470_length_973_cov_1.791080:1-973 [pilon] NODE_13297_length_243_cov_20.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13297_length_243_cov_20.262295:1-243 [pilon] Processing NODE_5026_length_617_cov_2.610887:1-617 [pilon] NODE_253_length_2327_cov_2.927471:1-2327 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 179, Coverage: 10, minDepth: 5 [pilon] Confirmed 2006 of 2327 bases (86.21%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_253_length_2327_cov_2.927471:1-2327 [pilon] Processing NODE_4505_length_661_cov_20.792593:1-661 [pilon] NODE_12203_length_243_cov_36.622951:1-243 log: [pilon] NODE_5833_length_553_cov_3.372685:1-553 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 31, Coverage: 7, minDepth: 5 [pilon] Confirmed 336 of 553 bases (60.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_9815_length_333_cov_24.584906:1-333 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 84, Coverage: 6, minDepth: 5 [pilon] Confirmed 157 of 333 bases (47.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5833_length_553_cov_3.372685:1-553 [pilon] Processing NODE_9597_length_342_cov_13.597285:1-342 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 96, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12203_length_243_cov_36.622951:1-243 [pilon] Processing NODE_365_length_2104_cov_1.073626:1-2104 [pilon] Finished processing NODE_9815_length_333_cov_24.584906:1-333 [pilon] Processing NODE_615_length_1788_cov_16.359928:1-1788 [pilon] NODE_5470_length_579_cov_24.694323:1-579 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 265, Coverage: 44, minDepth: 11 [pilon] Confirmed 484 of 579 bases (83.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5470_length_579_cov_24.694323:1-579 [pilon] Processing NODE_11533_length_262_cov_32.425532:1-262 [pilon] NODE_4637_length_649_cov_1.714015:1-649 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 406 of 649 bases (62.56%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4637_length_649_cov_1.714015:1-649 [pilon] Processing NODE_11260_length_273_cov_18.927632:1-273 [pilon] NODE_14654_length_243_cov_8.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14654_length_243_cov_8.975410:1-243 [pilon] Processing NODE_801_length_1626_cov_3.299003:1-1626 [pilon] NODE_10327_length_312_cov_19.732984:1-312 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 67, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 312 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10327_length_312_cov_19.732984:1-312 [pilon] Processing NODE_13833_length_243_cov_15.377049:1-243 [pilon] NODE_6071_length_534_cov_15.600484:1-534 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 164, Coverage: 19, minDepth: 5 [pilon] Confirmed 330 of 534 bases (61.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6071_length_534_cov_15.600484:1-534 [pilon] Processing NODE_5386_length_585_cov_24.021552:1-585 [pilon] NODE_7308_length_453_cov_19.936747:1-453 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 149, Coverage: 22, minDepth: 6 [pilon] Confirmed 305 of 453 bases (67.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7308_length_453_cov_19.936747:1-453 [pilon] Processing NODE_10046_length_323_cov_62.252475:1-323 [pilon] NODE_14962_length_243_cov_5.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14962_length_243_cov_5.959016:1-243 [pilon] Processing NODE_4226_length_691_cov_2.368421:1-691 [pilon] NODE_889_length_1569_cov_1.681630:1-1569 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 67, Coverage: 5, minDepth: 5 [pilon] Confirmed 670 of 1569 bases (42.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_889_length_1569_cov_1.681630:1-1569 [pilon] Processing NODE_9017_length_366_cov_9.408163:1-366 [pilon] NODE_10600_length_301_cov_5.072222:1-301 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 39, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 301 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10600_length_301_cov_5.072222:1-301 [pilon] Processing NODE_13787_length_243_cov_15.786885:1-243 [pilon] NODE_3498_length_783_cov_30.090634:1-783 log: [pilon] NODE_14596_length_243_cov_9.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14596_length_243_cov_9.426230:1-243 [pilon] Processing NODE_444_length_1976_cov_2.988679:1-1976 [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 464, Coverage: 61, minDepth: 15 [pilon] Confirmed 717 of 783 bases (91.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3498_length_783_cov_30.090634:1-783 [pilon] Processing NODE_12130_length_243_cov_41.737705:1-243 [pilon] NODE_9929_length_328_cov_33.106280:1-328 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 161, Coverage: 18, minDepth: 5 [pilon] Confirmed 254 of 328 bases (77.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9929_length_328_cov_33.106280:1-328 [pilon] Processing NODE_14865_length_243_cov_7.024590:1-243 [pilon] NODE_9347_length_352_cov_17.619048:1-352 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 88, Coverage: 6, minDepth: 5 [pilon] Confirmed 155 of 352 bases (44.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9347_length_352_cov_17.619048:1-352 [pilon] Processing NODE_13515_length_243_cov_18.262295:1-243 [pilon] NODE_2927_length_887_cov_28.637076:1-887 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 488, Coverage: 63, minDepth: 16 [pilon] Confirmed 696 of 887 bases (78.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2927_length_887_cov_28.637076:1-887 [pilon] Processing NODE_7495_length_443_cov_31.121118:1-443 [pilon] NODE_6075_length_534_cov_7.479419:1-534 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 82, Coverage: 14, minDepth: 5 [pilon] Confirmed 371 of 534 bases (69.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6075_length_534_cov_7.479419:1-534 [pilon] Processing NODE_780_length_1635_cov_41.115588:1-1635 [pilon] NODE_3716_length_753_cov_3.012658:1-753 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 48, Coverage: 8, minDepth: 5 [pilon] Confirmed 517 of 753 bases (68.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3716_length_753_cov_3.012658:1-753 [pilon] Processing NODE_8352_length_402_cov_25.256228:1-402 [pilon] NODE_3969_length_718_cov_6.293132:1-718 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 90, Coverage: 16, minDepth: 5 [pilon] Confirmed 643 of 718 bases (89.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3969_length_718_cov_6.293132:1-718 [pilon] Processing NODE_14706_length_243_cov_8.508197:1-243 [pilon] NODE_5970_length_543_cov_22.907583:1-543 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 183, Coverage: 20, minDepth: 5 [pilon] Confirmed 379 of 543 bases (69.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5970_length_543_cov_22.907583:1-543 [pilon] Processing NODE_3940_length_722_cov_25.542429:1-722 [pilon] NODE_12094_length_244_cov_11.934959:1-244 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 32, Coverage: 3, minDepth: 5 [pilon] Confirmed 78 of 244 bases (31.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12094_length_244_cov_11.934959:1-244 [pilon] Processing NODE_11296_length_273_cov_5.065789:1-273 [pilon] NODE_6039_length_537_cov_19.569712:1-537 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 179, Coverage: 24, minDepth: 6 [pilon] Confirmed 489 of 537 bases (91.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6039_length_537_cov_19.569712:1-537 [pilon] Processing NODE_454_length_1968_cov_12.106659:1-1968 [pilon] NODE_10269_length_315_cov_6.855670:1-315 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 36, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10269_length_315_cov_6.855670:1-315 [pilon] Processing NODE_14713_length_243_cov_8.475410:1-243 [pilon] NODE_5406_length_584_cov_1.129590:1-584 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 215 of 584 bases (36.82%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5406_length_584_cov_1.129590:1-584 [pilon] Processing NODE_588_length_1822_cov_2.723692:1-1822 [pilon] NODE_8932_length_369_cov_23.471774:1-369 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 133, Coverage: 23, minDepth: 6 [pilon] Confirmed 314 of 369 bases (85.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8932_length_369_cov_23.471774:1-369 [pilon] Processing NODE_6527_length_501_cov_39.663158:1-501 [pilon] NODE_2470_length_973_cov_1.791080:1-973 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 50, Coverage: 6, minDepth: 5 [pilon] Confirmed 441 of 973 bases (45.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2470_length_973_cov_1.791080:1-973 [pilon] Processing NODE_4327_length_678_cov_2.818671:1-678 [pilon] NODE_5026_length_617_cov_2.610887:1-617 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 39, Coverage: 8, minDepth: 5 [pilon] Confirmed 464 of 617 bases (75.20%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5026_length_617_cov_2.610887:1-617 [pilon] Processing NODE_5990_length_542_cov_1.377672:1-542 [pilon] NODE_4505_length_661_cov_20.792593:1-661 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 281, Coverage: 38, minDepth: 10 [pilon] Confirmed 474 of 661 bases (71.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4505_length_661_cov_20.792593:1-661 [pilon] Processing NODE_708_length_1699_cov_15.169202:1-1699 [pilon] NODE_10018_length_324_cov_24.660099:1-324 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 99, Coverage: 12, minDepth: 5 [pilon] Confirmed 236 of 324 bases (72.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10018_length_324_cov_24.660099:1-324 [pilon] Processing NODE_12025_length_246_cov_11.432000:1-246 [pilon] NODE_365_length_2104_cov_1.073626:1-2104 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 72, Coverage: 4, minDepth: 5 [pilon] Confirmed 1016 of 2104 bases (48.29%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_365_length_2104_cov_1.073626:1-2104 [pilon] Processing NODE_1750_length_1160_cov_22.007700:1-1160 [pilon] NODE_9597_length_342_cov_13.597285:1-342 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 59, Coverage: 7, minDepth: 5 [pilon] Confirmed 224 of 342 bases (65.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9597_length_342_cov_13.597285:1-342 [pilon] Processing NODE_4485_length_663_cov_12.230627:1-663 [pilon] NODE_11260_length_273_cov_18.927632:1-273 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 55, Coverage: 5, minDepth: 5 [pilon] Confirmed 161 of 273 bases (58.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11260_length_273_cov_18.927632:1-273 [pilon] Processing NODE_1513_length_1252_cov_21.503979:1-1252 [pilon] NODE_615_length_1788_cov_16.359928:1-1788 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 743, Coverage: 47, minDepth: 12 [pilon] Confirmed 1340 of 1788 bases (74.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_615_length_1788_cov_16.359928:1-1788 [pilon] Processing NODE_2843_length_903_cov_30.842711:1-903 [pilon] NODE_11533_length_262_cov_32.425532:1-262 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 109, Coverage: 11, minDepth: 5 [pilon] Confirmed 233 of 262 bases (88.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11533_length_262_cov_32.425532:1-262 [pilon] Processing NODE_784_length_1632_cov_2.893448:1-1632 [pilon] NODE_12130_length_243_cov_41.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12130_length_243_cov_41.737705:1-243 [pilon] Processing NODE_7553_length_441_cov_1.759375:1-441 [pilon] NODE_13833_length_243_cov_15.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13833_length_243_cov_15.377049:1-243 [pilon] Processing NODE_14140_length_243_cov_13.204918:1-243 [pilon] NODE_10046_length_323_cov_62.252475:1-323 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 264, Coverage: 47, minDepth: 12 [pilon] Confirmed 276 of 323 bases (85.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10046_length_323_cov_62.252475:1-323 [pilon] Processing NODE_8442_length_397_cov_21.021739:1-397 [pilon] NODE_5386_length_585_cov_24.021552:1-585 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 386, Coverage: 55, minDepth: 14 [pilon] Confirmed 527 of 585 bases (90.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5386_length_585_cov_24.021552:1-585 [pilon] Processing NODE_13202_length_243_cov_21.073770:1-243 [pilon] NODE_13787_length_243_cov_15.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13787_length_243_cov_15.786885:1-243 [pilon] Processing NODE_3943_length_722_cov_5.008319:1-722 [pilon] NODE_9017_length_366_cov_9.408163:1-366 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 49, Coverage: 4, minDepth: 5 [pilon] Confirmed 157 of 366 bases (42.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9017_length_366_cov_9.408163:1-366 [pilon] Processing NODE_14938_length_243_cov_6.278689:1-243 [pilon] NODE_801_length_1626_cov_3.299003:1-1626 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 150, Coverage: 12, minDepth: 5 [pilon] Confirmed 1483 of 1626 bases (91.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_801_length_1626_cov_3.299003:1-1626 [pilon] Processing NODE_7525_length_442_cov_1.233645:1-442 [pilon] NODE_7495_length_443_cov_31.121118:1-443 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 242, Coverage: 31, minDepth: 8 [pilon] Confirmed 373 of 443 bases (84.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7495_length_443_cov_31.121118:1-443 [pilon] Processing NODE_1761_length_1158_cov_2.027001:1-1158 [pilon] NODE_444_length_1976_cov_2.988679:1-1976 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 144, Coverage: 9, minDepth: 5 [pilon] Confirmed 1583 of 1976 bases (80.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_444_length_1976_cov_2.988679:1-1976 [pilon] Processing NODE_9459_length_348_cov_9.048458:1-348 [pilon] NODE_14865_length_243_cov_7.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14865_length_243_cov_7.024590:1-243 [pilon] Processing NODE_9253_length_355_cov_40.115385:1-355 [pilon] NODE_13515_length_243_cov_18.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13515_length_243_cov_18.262295:1-243 [pilon] Processing NODE_15055_length_240_cov_7.924370:1-240 [pilon] NODE_4226_length_691_cov_2.368421:1-691 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 52, Coverage: 8, minDepth: 5 [pilon] Confirmed 472 of 691 bases (68.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4226_length_691_cov_2.368421:1-691 [pilon] Processing NODE_6852_length_480_cov_22.952646:1-480 [pilon] NODE_8352_length_402_cov_25.256228:1-402 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 135, Coverage: 15, minDepth: 5 [pilon] Confirmed 250 of 402 bases (62.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8352_length_402_cov_25.256228:1-402 [pilon] Processing NODE_12499_length_243_cov_29.131148:1-243 [pilon] NODE_780_length_1635_cov_41.115588:1-1635 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 1555, Coverage: 72, minDepth: 18 [pilon] Confirmed 1480 of 1635 bases (90.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_780_length_1635_cov_41.115588:1-1635 [pilon] Processing NODE_4356_length_675_cov_12.667870:1-675 [pilon] NODE_14706_length_243_cov_8.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14706_length_243_cov_8.508197:1-243 [pilon] Processing NODE_8505_length_393_cov_31.889706:1-393 [pilon] NODE_3940_length_722_cov_25.542429:1-722 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 368, Coverage: 46, minDepth: 12 [pilon] Confirmed 532 of 722 bases (73.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3940_length_722_cov_25.542429:1-722 [pilon] Processing NODE_4588_length_654_cov_22.120075:1-654 [pilon] NODE_11296_length_273_cov_5.065789:1-273 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11296_length_273_cov_5.065789:1-273 [pilon] Processing NODE_4837_length_632_cov_0.929550:1-632 [pilon] NODE_454_length_1968_cov_12.106659:1-1968 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 554, Coverage: 29, minDepth: 7 [pilon] Confirmed 1807 of 1968 bases (91.82%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_454_length_1968_cov_12.106659:1-1968 [pilon] Processing NODE_537_length_1873_cov_2.656393:1-1873 [pilon] NODE_14713_length_243_cov_8.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14713_length_243_cov_8.475410:1-243 [pilon] Processing NODE_9016_length_366_cov_9.424490:1-366 [pilon] NODE_588_length_1822_cov_2.723692:1-1822 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 134, Coverage: 10, minDepth: 5 [pilon] Confirmed 1290 of 1822 bases (70.80%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_588_length_1822_cov_2.723692:1-1822 [pilon] Processing NODE_12198_length_243_cov_36.836066:1-243 [pilon] NODE_5990_length_542_cov_1.377672:1-542 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 181 of 542 bases (33.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5990_length_542_cov_1.377672:1-542 [pilon] Processing NODE_6861_length_480_cov_13.922006:1-480 [pilon] NODE_1750_length_1160_cov_22.007700:1-1160 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 561, Coverage: 44, minDepth: 11 [pilon] Confirmed 1090 of 1160 bases (93.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1750_length_1160_cov_22.007700:1-1160 [pilon] Processing NODE_6790_length_484_cov_0.655647:1-484 [pilon] NODE_4327_length_678_cov_2.818671:1-678 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 42, Coverage: 8, minDepth: 5 [pilon] Confirmed 504 of 678 bases (74.34%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4327_length_678_cov_2.818671:1-678 [pilon] Processing NODE_10940_length_286_cov_20.727273:1-286 [pilon] NODE_12025_length_246_cov_11.432000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 27, Coverage: 3, minDepth: 5 [pilon] Confirmed 34 of 246 bases (13.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12025_length_246_cov_11.432000:1-246 [pilon] Processing NODE_8765_length_379_cov_10.011628:1-379 [pilon] NODE_7525_length_442_cov_1.233645:1-442 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 13, Coverage: 2, minDepth: 5 [pilon] Confirmed 19 of 442 bases (4.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7525_length_442_cov_1.233645:1-442 [pilon] Processing NODE_7013_length_470_cov_79.352436:1-470 [pilon] NODE_14140_length_243_cov_13.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_14938_length_243_cov_6.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14938_length_243_cov_6.278689:1-243 [pilon] NODE_2843_length_903_cov_30.842711:1-903 log: [pilon] Processing NODE_7454_length_446_cov_1.301538:1-446 [pilon] NODE_708_length_1699_cov_15.169202:1-1699 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 663, Coverage: 50, minDepth: 13 [pilon] Confirmed 1440 of 1699 bases (84.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_708_length_1699_cov_15.169202:1-1699 [pilon] Processing NODE_118_length_2894_cov_3.036423:1-2894 [pilon] Finished processing NODE_14140_length_243_cov_13.204918:1-243 [pilon] Processing NODE_10365_length_310_cov_18.095238:1-310 [pilon] NODE_4485_length_663_cov_12.230627:1-663 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 162, Coverage: 17, minDepth: 5 [pilon] Confirmed 577 of 663 bases (87.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4485_length_663_cov_12.230627:1-663 [pilon] Processing NODE_4793_length_635_cov_9.192607:1-635 [pilon] NODE_8442_length_397_cov_21.021739:1-397 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 133, Coverage: 21, minDepth: 5 [pilon] Confirmed 315 of 397 bases (79.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8442_length_397_cov_21.021739:1-397 [pilon] Processing NODE_14642_length_243_cov_9.073770:1-243 [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 561, Coverage: 63, minDepth: 16 [pilon] Confirmed 789 of 903 bases (87.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2843_length_903_cov_30.842711:1-903 [pilon] Processing NODE_1567_length_1232_cov_12.395140:1-1232 [pilon] NODE_9459_length_348_cov_9.048458:1-348 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 42, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 348 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9459_length_348_cov_9.048458:1-348 [pilon] Processing NODE_9926_length_329_cov_9.110577:1-329 [pilon] NODE_1513_length_1252_cov_21.503979:1-1252 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 587, Coverage: 27, minDepth: 7 [pilon] Confirmed 1077 of 1252 bases (86.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1513_length_1252_cov_21.503979:1-1252 [pilon] Processing NODE_1176_length_1407_cov_35.504666:1-1407 [pilon] NODE_3943_length_722_cov_5.008319:1-722 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 87, Coverage: 15, minDepth: 5 [pilon] Confirmed 588 of 722 bases (81.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3943_length_722_cov_5.008319:1-722 [pilon] Processing NODE_7648_length_435_cov_26.238854:1-435 [pilon] NODE_7553_length_441_cov_1.759375:1-441 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 263 of 441 bases (59.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7553_length_441_cov_1.759375:1-441 [pilon] Processing NODE_5160_length_605_cov_9.380165:1-605 [pilon] NODE_6527_length_501_cov_39.663158:1-501 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 345, Coverage: 53, minDepth: 13 [pilon] Confirmed 432 of 501 bases (86.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6527_length_501_cov_39.663158:1-501 [pilon] Processing NODE_5466_length_579_cov_51.377729:1-579 [pilon] NODE_784_length_1632_cov_2.893448:1-1632 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 130, Coverage: 10, minDepth: 5 [pilon] Confirmed 1127 of 1632 bases (69.06%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_784_length_1632_cov_2.893448:1-1632 [pilon] Processing NODE_5253_length_596_cov_21.077895:1-596 [pilon] NODE_1761_length_1158_cov_2.027001:1-1158 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 72, Coverage: 8, minDepth: 5 [pilon] Confirmed 713 of 1158 bases (61.57%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1761_length_1158_cov_2.027001:1-1158 [pilon] Processing NODE_12950_length_243_cov_23.409836:1-243 [pilon] NODE_15055_length_240_cov_7.924370:1-240 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 240 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15055_length_240_cov_7.924370:1-240 [pilon] Processing NODE_1637_length_1204_cov_3.466297:1-1204 [pilon] NODE_6852_length_480_cov_22.952646:1-480 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 194, Coverage: 33, minDepth: 8 [pilon] Confirmed 356 of 480 bases (74.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6852_length_480_cov_22.952646:1-480 [pilon] Processing NODE_4392_length_672_cov_11.622505:1-672 [pilon] NODE_13202_length_243_cov_21.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13202_length_243_cov_21.073770:1-243 [pilon] Processing NODE_1707_length_1178_cov_2.750237:1-1178 [pilon] NODE_9253_length_355_cov_40.115385:1-355 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 199, Coverage: 31, minDepth: 8 [pilon] Confirmed 313 of 355 bases (88.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9253_length_355_cov_40.115385:1-355 [pilon] Processing NODE_7945_length_420_cov_22.083612:1-420 [pilon] NODE_12499_length_243_cov_29.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12499_length_243_cov_29.131148:1-243 [pilon] Processing NODE_2739_length_920_cov_19.078849:1-920 [pilon] NODE_4356_length_675_cov_12.667870:1-675 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 165, Coverage: 22, minDepth: 6 [pilon] Confirmed 538 of 675 bases (79.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4356_length_675_cov_12.667870:1-675 [pilon] Processing NODE_8036_length_417_cov_0.597973:1-417 [pilon] NODE_8505_length_393_cov_31.889706:1-393 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 169, Coverage: 19, minDepth: 5 [pilon] Confirmed 262 of 393 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8505_length_393_cov_31.889706:1-393 [pilon] Processing NODE_4299_length_681_cov_21.223214:1-681 [pilon] NODE_4588_length_654_cov_22.120075:1-654 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 273, Coverage: 38, minDepth: 10 [pilon] Confirmed 513 of 654 bases (78.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4588_length_654_cov_22.120075:1-654 [pilon] Processing NODE_2260_length_1019_cov_18.144766:1-1019 [pilon] NODE_4837_length_632_cov_0.929550:1-632 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 85 of 632 bases (13.45%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4837_length_632_cov_0.929550:1-632 [pilon] Processing NODE_9606_length_342_cov_8.855204:1-342 [pilon] NODE_537_length_1873_cov_2.656393:1-1873 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 130, Coverage: 9, minDepth: 5 [pilon] Confirmed 1391 of 1873 bases (74.27%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_537_length_1873_cov_2.656393:1-1873 [pilon] Processing NODE_9070_length_363_cov_16.929752:1-363 [pilon] NODE_9016_length_366_cov_9.424490:1-366 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 56, Coverage: 9, minDepth: 5 [pilon] Confirmed 276 of 366 bases (75.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9016_length_366_cov_9.424490:1-366 [pilon] Processing NODE_1171_length_1409_cov_17.191770:1-1409 [pilon] NODE_12198_length_243_cov_36.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 102, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12198_length_243_cov_36.836066:1-243 [pilon] Processing NODE_12633_length_243_cov_27.098361:1-243 [pilon] NODE_6861_length_480_cov_13.922006:1-480 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 118, Coverage: 21, minDepth: 5 [pilon] Confirmed 324 of 480 bases (67.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6861_length_480_cov_13.922006:1-480 [pilon] Processing NODE_832_length_1610_cov_18.599060:1-1610 [pilon] NODE_7013_length_470_cov_79.352436:1-470 log: [pilon] frags shovill.bam: coverage 112 [pilon] Total Reads: 612, Coverage: 112, minDepth: 28 [pilon] Confirmed 406 of 470 bases (86.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7013_length_470_cov_79.352436:1-470 [pilon] Processing NODE_14586_length_243_cov_9.540984:1-243 [pilon] NODE_10940_length_286_cov_20.727273:1-286 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 67, Coverage: 5, minDepth: 5 [pilon] Confirmed 137 of 286 bases (47.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10940_length_286_cov_20.727273:1-286 [pilon] Processing NODE_10468_length_306_cov_11.762162:1-306 [pilon] NODE_14642_length_243_cov_9.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14642_length_243_cov_9.073770:1-243 [pilon] Processing NODE_7886_length_423_cov_25.109272:1-423 [pilon] NODE_6790_length_484_cov_0.655647:1-484 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 53 of 484 bases (10.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6790_length_484_cov_0.655647:1-484 [pilon] Processing NODE_170_length_2595_cov_13.356508:1-2595 [pilon] NODE_7454_length_446_cov_1.301538:1-446 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 17, Coverage: 5, minDepth: 5 [pilon] Confirmed 292 of 446 bases (65.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7454_length_446_cov_1.301538:1-446 [pilon] Processing NODE_14682_length_243_cov_8.729508:1-243 [pilon] NODE_8765_length_379_cov_10.011628:1-379 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 57, Coverage: 8, minDepth: 5 [pilon] Confirmed 240 of 379 bases (63.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8765_length_379_cov_10.011628:1-379 [pilon] Processing NODE_6625_length_495_cov_33.379679:1-495 [pilon] NODE_1567_length_1232_cov_12.395140:1-1232 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 364, Coverage: 31, minDepth: 8 [pilon] Confirmed 1057 of 1232 bases (85.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1567_length_1232_cov_12.395140:1-1232 [pilon] Processing NODE_11267_length_273_cov_15.013158:1-273 [pilon] NODE_4793_length_635_cov_9.192607:1-635 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 113, Coverage: 13, minDepth: 5 [pilon] Confirmed 432 of 635 bases (68.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4793_length_635_cov_9.192607:1-635 [pilon] Processing NODE_2910_length_891_cov_1.597403:1-891 [pilon] NODE_1176_length_1407_cov_35.504666:1-1407 log: [pilon] frags shovill.bam: coverage 88 [pilon] Total Reads: 1072, Coverage: 88, minDepth: 22 [pilon] Confirmed 1058 of 1407 bases (75.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1176_length_1407_cov_35.504666:1-1407 [pilon] Processing NODE_8323_length_403_cov_24.347518:1-403 [pilon] NODE_10365_length_310_cov_18.095238:1-310 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 76, Coverage: 4, minDepth: 5 [pilon] Confirmed 132 of 310 bases (42.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10365_length_310_cov_18.095238:1-310 [pilon] Processing NODE_7685_length_433_cov_2.060897:1-433 [pilon] NODE_118_length_2894_cov_3.036423:1-2894 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 238, Coverage: 11, minDepth: 5 [pilon] Confirmed 2073 of 2894 bases (71.63%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_118_length_2894_cov_3.036423:1-2894 [pilon] Processing NODE_2873_length_898_cov_32.822394:1-898 [pilon] NODE_5160_length_605_cov_9.380165:1-605 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 114, Coverage: 13, minDepth: 5 [pilon] Confirmed 477 of 605 bases (78.84%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5160_length_605_cov_9.380165:1-605 [pilon] Processing NODE_15207_length_156_cov_38.428571:1-156 [pilon] NODE_9926_length_329_cov_9.110577:1-329 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 329 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9926_length_329_cov_9.110577:1-329 [pilon] Processing NODE_9910_length_330_cov_10.349282:1-330 [pilon] NODE_12950_length_243_cov_23.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12950_length_243_cov_23.409836:1-243 [pilon] Processing NODE_6836_length_481_cov_12.616667:1-481 [pilon] NODE_4392_length_672_cov_11.622505:1-672 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 146, Coverage: 15, minDepth: 5 [pilon] Confirmed 568 of 672 bases (84.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4392_length_672_cov_11.622505:1-672 [pilon] Processing NODE_21_length_5022_cov_32.476433:1-5022 [pilon] NODE_5466_length_579_cov_51.377729:1-579 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 526, Coverage: 90, minDepth: 23 [pilon] Confirmed 460 of 579 bases (79.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5466_length_579_cov_51.377729:1-579 [pilon] Processing NODE_7032_length_469_cov_16.258621:1-469 [pilon] NODE_5253_length_596_cov_21.077895:1-596 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 227, Coverage: 36, minDepth: 9 [pilon] Confirmed 470 of 596 bases (78.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5253_length_596_cov_21.077895:1-596 [pilon] Processing NODE_4110_length_704_cov_4.927959:1-704 [pilon] NODE_7648_length_435_cov_26.238854:1-435 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 177, Coverage: 32, minDepth: 8 [pilon] Confirmed 319 of 435 bases (73.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7648_length_435_cov_26.238854:1-435 [pilon] Processing NODE_14615_length_243_cov_9.286885:1-243 [pilon] NODE_7945_length_420_cov_22.083612:1-420 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 142, Coverage: 29, minDepth: 7 [pilon] Confirmed 310 of 420 bases (73.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7945_length_420_cov_22.083612:1-420 [pilon] Processing NODE_5441_length_581_cov_13.102174:1-581 [pilon] NODE_1637_length_1204_cov_3.466297:1-1204 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 96, Coverage: 10, minDepth: 5 [pilon] Confirmed 813 of 1204 bases (67.52%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1637_length_1204_cov_3.466297:1-1204 [pilon] Processing NODE_1383_length_1304_cov_3.291631:1-1304 [pilon] NODE_4299_length_681_cov_21.223214:1-681 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 275, Coverage: 22, minDepth: 6 [pilon] Confirmed 467 of 681 bases (68.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4299_length_681_cov_21.223214:1-681 [pilon] NODE_1707_length_1178_cov_2.750237:1-1178 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 72, Coverage: 8, minDepth: 5 [pilon] Confirmed 951 of 1178 bases (80.73%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_15150_length_190_cov_8.304348:1-190 [pilon] Finished processing NODE_1707_length_1178_cov_2.750237:1-1178 [pilon] Processing NODE_5960_length_544_cov_2.683215:1-544 [pilon] NODE_2739_length_920_cov_19.078849:1-920 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 328, Coverage: 26, minDepth: 7 [pilon] Confirmed 816 of 920 bases (88.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2739_length_920_cov_19.078849:1-920 [pilon] Processing NODE_6805_length_483_cov_1.660221:1-483 [pilon] NODE_8036_length_417_cov_0.597973:1-417 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 417 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8036_length_417_cov_0.597973:1-417 [pilon] Processing NODE_5474_length_579_cov_17.530568:1-579 [pilon] NODE_2260_length_1019_cov_18.144766:1-1019 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 390, Coverage: 36, minDepth: 9 [pilon] Confirmed 721 of 1019 bases (70.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2260_length_1019_cov_18.144766:1-1019 [pilon] Processing NODE_10350_length_311_cov_49.510526:1-311 [pilon] NODE_9070_length_363_cov_16.929752:1-363 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 91, Coverage: 2, minDepth: 5 [pilon] Confirmed 124 of 363 bases (34.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9070_length_363_cov_16.929752:1-363 [pilon] Processing NODE_10559_length_303_cov_9.203297:1-303 [pilon] NODE_9606_length_342_cov_8.855204:1-342 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 41, Coverage: 6, minDepth: 5 [pilon] Confirmed 189 of 342 bases (55.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9606_length_342_cov_8.855204:1-342 [pilon] Processing NODE_1206_length_1393_cov_8.548742:1-1393 [pilon] NODE_1171_length_1409_cov_17.191770:1-1409 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 573, Coverage: 30, minDepth: 8 [pilon] Confirmed 852 of 1409 bases (60.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1171_length_1409_cov_17.191770:1-1409 [pilon] Processing NODE_4942_length_623_cov_1.424303:1-623 [pilon] NODE_12633_length_243_cov_27.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12633_length_243_cov_27.098361:1-243 [pilon] Processing NODE_4326_length_678_cov_3.827648:1-678 [pilon] NODE_14586_length_243_cov_9.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14586_length_243_cov_9.540984:1-243 [pilon] Processing NODE_2657_length_936_cov_12.874847:1-936 [pilon] NODE_10468_length_306_cov_11.762162:1-306 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 58, Coverage: 3, minDepth: 5 [pilon] Confirmed 112 of 306 bases (36.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10468_length_306_cov_11.762162:1-306 [pilon] Processing NODE_5736_length_560_cov_24.170843:1-560 [pilon] NODE_832_length_1610_cov_18.599060:1-1610 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 644, Coverage: 40, minDepth: 10 [pilon] Confirmed 1365 of 1610 bases (84.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_832_length_1610_cov_18.599060:1-1610 [pilon] Processing NODE_1320_length_1333_cov_1.507426:1-1333 [pilon] NODE_7886_length_423_cov_25.109272:1-423 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 179, Coverage: 31, minDepth: 8 [pilon] Confirmed 343 of 423 bases (81.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7886_length_423_cov_25.109272:1-423 [pilon] Processing NODE_10893_length_288_cov_23.838323:1-288 [pilon] NODE_14682_length_243_cov_8.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14682_length_243_cov_8.729508:1-243 [pilon] NODE_9910_length_330_cov_10.349282:1-330 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 43, Coverage: 7, minDepth: 5 [pilon] Confirmed 178 of 330 bases (53.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9910_length_330_cov_10.349282:1-330 [pilon] Processing NODE_165_length_2650_cov_20.319494:1-2650 [pilon] Processing NODE_4656_length_648_cov_0.690702:1-648 [pilon] NODE_7685_length_433_cov_2.060897:1-433 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 274 of 433 bases (63.28%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7685_length_433_cov_2.060897:1-433 [pilon] Processing NODE_13860_length_243_cov_15.204918:1-243 [pilon] NODE_8323_length_403_cov_24.347518:1-403 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 162, Coverage: 18, minDepth: 5 [pilon] Confirmed 344 of 403 bases (85.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8323_length_403_cov_24.347518:1-403 [pilon] Processing NODE_12090_length_244_cov_14.577236:1-244 [pilon] NODE_11267_length_273_cov_15.013158:1-273 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 50, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11267_length_273_cov_15.013158:1-273 [pilon] Processing NODE_4640_length_648_cov_29.091082:1-648 [pilon] NODE_170_length_2595_cov_13.356508:1-2595 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 946, Coverage: 41, minDepth: 10 [pilon] Confirmed 2370 of 2595 bases (91.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_170_length_2595_cov_13.356508:1-2595 [pilon] Processing NODE_7034_length_469_cov_12.600575:1-469 [pilon] NODE_2873_length_898_cov_32.822394:1-898 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 613, Coverage: 73, minDepth: 18 [pilon] Confirmed 615 of 898 bases (68.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2873_length_898_cov_32.822394:1-898 [pilon] Processing NODE_8126_length_412_cov_1.082474:1-412 [pilon] NODE_6625_length_495_cov_33.379679:1-495 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 312, Coverage: 43, minDepth: 11 [pilon] Confirmed 320 of 495 bases (64.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6625_length_495_cov_33.379679:1-495 [pilon] Processing NODE_4977_length_620_cov_14.294589:1-620 [pilon] NODE_2910_length_891_cov_1.597403:1-891 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 35, Coverage: 5, minDepth: 5 [pilon] Confirmed 447 of 891 bases (50.17%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2910_length_891_cov_1.597403:1-891 [pilon] Processing NODE_424_length_2004_cov_2.726500:1-2004 [pilon] NODE_15207_length_156_cov_38.428571:1-156 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 156 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15207_length_156_cov_38.428571:1-156 [pilon] Processing NODE_4609_length_652_cov_1.627119:1-652 [pilon] NODE_1383_length_1304_cov_3.291631:1-1304 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 105, Coverage: 10, minDepth: 5 [pilon] Confirmed 1008 of 1304 bases (77.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1383_length_1304_cov_3.291631:1-1304 [pilon] Processing NODE_12158_length_243_cov_38.901639:1-243 [pilon] NODE_7032_length_469_cov_16.258621:1-469 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 126, Coverage: 14, minDepth: 5 [pilon] Confirmed 305 of 469 bases (65.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7032_length_469_cov_16.258621:1-469 [pilon] Processing NODE_859_length_1589_cov_28.920300:1-1589 [pilon] NODE_6836_length_481_cov_12.616667:1-481 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 87, Coverage: 6, minDepth: 5 [pilon] Confirmed 318 of 481 bases (66.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6836_length_481_cov_12.616667:1-481 [pilon] Processing NODE_11745_length_255_cov_19.276119:1-255 [pilon] NODE_14615_length_243_cov_9.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14615_length_243_cov_9.286885:1-243 [pilon] Processing NODE_3001_length_873_cov_13.617021:1-873 [pilon] NODE_4110_length_704_cov_4.927959:1-704 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 70, Coverage: 11, minDepth: 5 [pilon] Confirmed 521 of 704 bases (74.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4110_length_704_cov_4.927959:1-704 [pilon] Processing NODE_7353_length_450_cov_23.164134:1-450 [pilon] NODE_5960_length_544_cov_2.683215:1-544 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 29, Coverage: 7, minDepth: 5 [pilon] Confirmed 288 of 544 bases (52.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5960_length_544_cov_2.683215:1-544 [pilon] Processing NODE_6990_length_472_cov_1.000000:1-472 [pilon] NODE_5474_length_579_cov_17.530568:1-579 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 177, Coverage: 19, minDepth: 5 [pilon] Confirmed 407 of 579 bases (70.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5474_length_579_cov_17.530568:1-579 [pilon] Processing NODE_10195_length_318_cov_7.695431:1-318 [pilon] NODE_5441_length_581_cov_13.102174:1-581 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 139, Coverage: 12, minDepth: 5 [pilon] Confirmed 288 of 581 bases (49.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5441_length_581_cov_13.102174:1-581 [pilon] Processing NODE_1460_length_1278_cov_12.713915:1-1278 [pilon] NODE_6805_length_483_cov_1.660221:1-483 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 245 of 483 bases (50.72%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6805_length_483_cov_1.660221:1-483 [pilon] Processing NODE_2869_length_899_cov_2.921594:1-899 [pilon] NODE_15150_length_190_cov_8.304348:1-190 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 190 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15150_length_190_cov_8.304348:1-190 [pilon] Processing NODE_8564_length_390_cov_14.085502:1-390 [pilon] NODE_10350_length_311_cov_49.510526:1-311 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 217, Coverage: 25, minDepth: 6 [pilon] Confirmed 284 of 311 bases (91.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10350_length_311_cov_49.510526:1-311 [pilon] Processing NODE_12137_length_243_cov_40.778689:1-243 [pilon] NODE_21_length_5022_cov_32.476433:1-5022 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 3629, Coverage: 70, minDepth: 18 [pilon] Confirmed 4726 of 5022 bases (94.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_21_length_5022_cov_32.476433:1-5022 [pilon] Processing NODE_6166_length_527_cov_19.827586:1-527 [pilon] NODE_10559_length_303_cov_9.203297:1-303 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 39, Coverage: 3, minDepth: 5 [pilon] Confirmed 109 of 303 bases (35.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10559_length_303_cov_9.203297:1-303 [pilon] Processing NODE_2249_length_1021_cov_2.033333:1-1021 [pilon] NODE_1206_length_1393_cov_8.548742:1-1393 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 283, Coverage: 24, minDepth: 6 [pilon] Confirmed 1222 of 1393 bases (87.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1206_length_1393_cov_8.548742:1-1393 [pilon] Processing NODE_4439_length_667_cov_3.851648:1-667 [pilon] NODE_4942_length_623_cov_1.424303:1-623 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 246 of 623 bases (39.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4942_length_623_cov_1.424303:1-623 [pilon] Processing NODE_12296_length_243_cov_33.196721:1-243 [pilon] NODE_4326_length_678_cov_3.827648:1-678 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 68, Coverage: 12, minDepth: 5 [pilon] Confirmed 563 of 678 bases (83.04%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4326_length_678_cov_3.827648:1-678 [pilon] Processing NODE_1776_length_1154_cov_12.479187:1-1154 [pilon] NODE_2657_length_936_cov_12.874847:1-936 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 254, Coverage: 35, minDepth: 9 [pilon] Confirmed 568 of 936 bases (60.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2657_length_936_cov_12.874847:1-936 [pilon] Processing NODE_13462_length_243_cov_18.745902:1-243 [pilon] NODE_4656_length_648_cov_0.690702:1-648 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 25, Coverage: 4, minDepth: 5 [pilon] Confirmed 296 of 648 bases (45.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4656_length_648_cov_0.690702:1-648 [pilon] Processing NODE_10460_length_306_cov_15.102703:1-306 [pilon] NODE_5736_length_560_cov_24.170843:1-560 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 234, Coverage: 34, minDepth: 9 [pilon] Confirmed 390 of 560 bases (69.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5736_length_560_cov_24.170843:1-560 [pilon] Processing NODE_3100_length_853_cov_24.046448:1-853 [pilon] NODE_1320_length_1333_cov_1.507426:1-1333 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 54, Coverage: 5, minDepth: 5 [pilon] Confirmed 614 of 1333 bases (46.06%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1320_length_1333_cov_1.507426:1-1333 [pilon] Processing NODE_3228_length_829_cov_12.984463:1-829 [pilon] NODE_10893_length_288_cov_23.838323:1-288 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 93, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10893_length_288_cov_23.838323:1-288 [pilon] Processing NODE_12522_length_243_cov_28.786885:1-243 [pilon] NODE_13860_length_243_cov_15.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13860_length_243_cov_15.204918:1-243 [pilon] Processing NODE_10493_length_305_cov_18.418478:1-305 [pilon] NODE_12090_length_244_cov_14.577236:1-244 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 40, Coverage: 3, minDepth: 5 [pilon] Confirmed 79 of 244 bases (32.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12090_length_244_cov_14.577236:1-244 [pilon] Processing NODE_3370_length_802_cov_4.599119:1-802 [pilon] NODE_3001_length_873_cov_13.617021:1-873 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 227, Coverage: 28, minDepth: 7 [pilon] Confirmed 629 of 873 bases (72.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3001_length_873_cov_13.617021:1-873 [pilon] Processing NODE_9526_length_345_cov_14.348214:1-345 [pilon] NODE_4640_length_648_cov_29.091082:1-648 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 335, Coverage: 36, minDepth: 9 [pilon] Confirmed 518 of 648 bases (79.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4640_length_648_cov_29.091082:1-648 [pilon] Processing NODE_14572_length_243_cov_9.696721:1-243 [pilon] NODE_7034_length_469_cov_12.600575:1-469 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 102, Coverage: 18, minDepth: 5 [pilon] Confirmed 394 of 469 bases (84.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7034_length_469_cov_12.600575:1-469 [pilon] Processing NODE_8983_length_367_cov_21.524390:1-367 [pilon] NODE_8126_length_412_cov_1.082474:1-412 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 8 of 412 bases (1.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8126_length_412_cov_1.082474:1-412 [pilon] Processing NODE_1482_length_1270_cov_9.202785:1-1270 [pilon] NODE_4977_length_620_cov_14.294589:1-620 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 162, Coverage: 29, minDepth: 7 [pilon] Confirmed 440 of 620 bases (70.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4977_length_620_cov_14.294589:1-620 [pilon] Processing NODE_11072_length_280_cov_19.289308:1-280 [pilon] NODE_12158_length_243_cov_38.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12158_length_243_cov_38.901639:1-243 [pilon] Processing NODE_1503_length_1257_cov_30.147887:1-1257 [pilon] NODE_859_length_1589_cov_28.920300:1-1589 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 948, Coverage: 67, minDepth: 17 [pilon] Confirmed 1508 of 1589 bases (94.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_859_length_1589_cov_28.920300:1-1589 [pilon] Processing NODE_1808_length_1144_cov_32.172043:1-1144 [pilon] NODE_4609_length_652_cov_1.627119:1-652 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 325 of 652 bases (49.85%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4609_length_652_cov_1.627119:1-652 [pilon] Processing NODE_3042_length_865_cov_9.321237:1-865 [pilon] NODE_165_length_2650_cov_20.319494:1-2650 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 1396, Coverage: 63, minDepth: 16 [pilon] Confirmed 2222 of 2650 bases (83.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_165_length_2650_cov_20.319494:1-2650 [pilon] Processing NODE_13714_length_243_cov_16.295082:1-243 [pilon] NODE_6990_length_472_cov_1.000000:1-472 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 472 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6990_length_472_cov_1.000000:1-472 [pilon] Processing NODE_10912_length_288_cov_16.035928:1-288 [pilon] NODE_11745_length_255_cov_19.276119:1-255 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 58, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11745_length_255_cov_19.276119:1-255 [pilon] Processing NODE_2246_length_1021_cov_7.406667:1-1021 [pilon] NODE_424_length_2004_cov_2.726500:1-2004 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 159, Coverage: 10, minDepth: 5 [pilon] Confirmed 1580 of 2004 bases (78.84%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_424_length_2004_cov_2.726500:1-2004 [pilon] Processing NODE_10413_length_308_cov_19.839572:1-308 [pilon] NODE_8564_length_390_cov_14.085502:1-390 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 96, Coverage: 2, minDepth: 5 [pilon] Confirmed 94 of 390 bases (24.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8564_length_390_cov_14.085502:1-390 [pilon] Processing NODE_14506_length_243_cov_10.270492:1-243 [pilon] NODE_7353_length_450_cov_23.164134:1-450 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 181, Coverage: 14, minDepth: 5 [pilon] Confirmed 239 of 450 bases (53.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7353_length_450_cov_23.164134:1-450 [pilon] Processing NODE_13615_length_243_cov_17.352459:1-243 [pilon] NODE_1460_length_1278_cov_12.713915:1-1278 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 363, Coverage: 27, minDepth: 7 [pilon] Confirmed 690 of 1278 bases (53.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1460_length_1278_cov_12.713915:1-1278 [pilon] Processing NODE_2037_length_1076_cov_34.100524:1-1076 [pilon] NODE_10195_length_318_cov_7.695431:1-318 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 22, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 318 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10195_length_318_cov_7.695431:1-318 [pilon] Processing NODE_6357_length_513_cov_18.533163:1-513 [pilon] NODE_12137_length_243_cov_40.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 107, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12137_length_243_cov_40.778689:1-243 [pilon] Processing NODE_3575_length_773_cov_39.108896:1-773 [pilon] NODE_2869_length_899_cov_2.921594:1-899 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 66, Coverage: 9, minDepth: 5 [pilon] Confirmed 629 of 899 bases (69.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2869_length_899_cov_2.921594:1-899 [pilon] Processing NODE_6180_length_526_cov_1.138272:1-526 [pilon] NODE_6166_length_527_cov_19.827586:1-527 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 193, Coverage: 29, minDepth: 7 [pilon] Confirmed 363 of 527 bases (68.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6166_length_527_cov_19.827586:1-527 [pilon] Processing NODE_9135_length_360_cov_15.970711:1-360 [pilon] NODE_2249_length_1021_cov_2.033333:1-1021 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 374 of 1021 bases (36.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2249_length_1021_cov_2.033333:1-1021 [pilon] Processing NODE_6360_length_513_cov_5.448980:1-513 [pilon] NODE_4439_length_667_cov_3.851648:1-667 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 55, Coverage: 11, minDepth: 5 [pilon] Confirmed 475 of 667 bases (71.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4439_length_667_cov_3.851648:1-667 [pilon] Processing NODE_4411_length_670_cov_27.459016:1-670 [pilon] NODE_12296_length_243_cov_33.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12296_length_243_cov_33.196721:1-243 [pilon] Processing NODE_5082_length_611_cov_49.765306:1-611 [pilon] NODE_1776_length_1154_cov_12.479187:1-1154 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 341, Coverage: 27, minDepth: 7 [pilon] Confirmed 1047 of 1154 bases (90.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1776_length_1154_cov_12.479187:1-1154 [pilon] Processing NODE_13829_length_243_cov_15.385246:1-243 [pilon] NODE_10460_length_306_cov_15.102703:1-306 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 61, Coverage: 3, minDepth: 5 [pilon] Confirmed 121 of 306 bases (39.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10460_length_306_cov_15.102703:1-306 [pilon] Processing NODE_9878_length_330_cov_29.028708:1-330 [pilon] NODE_3100_length_853_cov_24.046448:1-853 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 378, Coverage: 39, minDepth: 10 [pilon] Confirmed 661 of 853 bases (77.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3100_length_853_cov_24.046448:1-853 [pilon] Processing NODE_13701_length_243_cov_16.409836:1-243 [pilon] NODE_13462_length_243_cov_18.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13462_length_243_cov_18.745902:1-243 [pilon] Processing NODE_5818_length_554_cov_4.524249:1-554 [pilon] NODE_10493_length_305_cov_18.418478:1-305 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 78, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 305 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10493_length_305_cov_18.418478:1-305 [pilon] Processing NODE_1462_length_1277_cov_10.687716:1-1277 [pilon] NODE_12522_length_243_cov_28.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12522_length_243_cov_28.786885:1-243 [pilon] Processing NODE_5649_length_567_cov_15.053812:1-567 [pilon] NODE_14572_length_243_cov_9.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14572_length_243_cov_9.696721:1-243 [pilon] NODE_9526_length_345_cov_14.348214:1-345 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 71, Coverage: 6, minDepth: 5 [pilon] Confirmed 169 of 345 bases (48.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9526_length_345_cov_14.348214:1-345 [pilon] Processing NODE_10434_length_307_cov_8.500000:1-307 [pilon] Processing NODE_7999_length_418_cov_14.649832:1-418 [pilon] NODE_3228_length_829_cov_12.984463:1-829 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 210, Coverage: 27, minDepth: 7 [pilon] Confirmed 606 of 829 bases (73.10%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3228_length_829_cov_12.984463:1-829 [pilon] Processing NODE_8561_length_390_cov_20.007435:1-390 [pilon] NODE_3370_length_802_cov_4.599119:1-802 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 73, Coverage: 12, minDepth: 5 [pilon] Confirmed 552 of 802 bases (68.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3370_length_802_cov_4.599119:1-802 [pilon] Processing NODE_9506_length_345_cov_25.334821:1-345 [pilon] NODE_13714_length_243_cov_16.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13714_length_243_cov_16.295082:1-243 [pilon] Processing NODE_14031_length_243_cov_13.975410:1-243 [pilon] NODE_8983_length_367_cov_21.524390:1-367 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 116, Coverage: 13, minDepth: 5 [pilon] Confirmed 220 of 367 bases (59.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8983_length_367_cov_21.524390:1-367 [pilon] Processing NODE_1913_length_1109_cov_15.961538:1-1109 [pilon] NODE_1482_length_1270_cov_9.202785:1-1270 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 247, Coverage: 25, minDepth: 6 [pilon] Confirmed 1039 of 1270 bases (81.81%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1482_length_1270_cov_9.202785:1-1270 [pilon] Processing NODE_3388_length_799_cov_18.988201:1-799 [pilon] NODE_1503_length_1257_cov_30.147887:1-1257 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 785, Coverage: 54, minDepth: 14 [pilon] Confirmed 1047 of 1257 bases (83.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1503_length_1257_cov_30.147887:1-1257 [pilon] Processing NODE_8189_length_409_cov_0.892361:1-409 [pilon] NODE_11072_length_280_cov_19.289308:1-280 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 63, Coverage: 5, minDepth: 5 [pilon] Confirmed 131 of 280 bases (46.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11072_length_280_cov_19.289308:1-280 [pilon] Processing NODE_7465_length_445_cov_1.259259:1-445 [pilon] NODE_10413_length_308_cov_19.839572:1-308 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 78, Coverage: 11, minDepth: 5 [pilon] Confirmed 248 of 308 bases (80.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10413_length_308_cov_19.839572:1-308 [pilon] Processing NODE_3380_length_800_cov_10.715758:1-800 [pilon] NODE_3042_length_865_cov_9.321237:1-865 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 207, Coverage: 22, minDepth: 6 [pilon] Confirmed 744 of 865 bases (86.01%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3042_length_865_cov_9.321237:1-865 [pilon] Processing NODE_11925_length_249_cov_10.664062:1-249 [pilon] NODE_10912_length_288_cov_16.035928:1-288 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10912_length_288_cov_16.035928:1-288 [pilon] Processing NODE_9846_length_333_cov_8.127358:1-333 [pilon] NODE_6357_length_513_cov_18.533163:1-513 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 171, Coverage: 31, minDepth: 8 [pilon] Confirmed 364 of 513 bases (70.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6357_length_513_cov_18.533163:1-513 [pilon] Processing NODE_8964_length_368_cov_26.016194:1-368 [pilon] NODE_1808_length_1144_cov_32.172043:1-1144 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 886, Coverage: 46, minDepth: 12 [pilon] Confirmed 946 of 1144 bases (82.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1808_length_1144_cov_32.172043:1-1144 [pilon] Processing NODE_1677_length_1190_cov_12.650140:1-1190 [pilon] NODE_13615_length_243_cov_17.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13615_length_243_cov_17.352459:1-243 [pilon] Processing NODE_5155_length_605_cov_64.204545:1-605 [pilon] NODE_6180_length_526_cov_1.138272:1-526 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 32 of 526 bases (6.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6180_length_526_cov_1.138272:1-526 [pilon] Processing NODE_53_length_3562_cov_13.454810:1-3562 [pilon] NODE_14506_length_243_cov_10.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14506_length_243_cov_10.270492:1-243 [pilon] Processing NODE_3603_length_768_cov_5.669243:1-768 [pilon] NODE_2246_length_1021_cov_7.406667:1-1021 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 200, Coverage: 21, minDepth: 5 [pilon] Confirmed 784 of 1021 bases (76.79%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2246_length_1021_cov_7.406667:1-1021 [pilon] Processing NODE_7081_length_466_cov_20.266667:1-466 [pilon] NODE_3575_length_773_cov_39.108896:1-773 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 578, Coverage: 81, minDepth: 20 [pilon] Confirmed 638 of 773 bases (82.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3575_length_773_cov_39.108896:1-773 [pilon] Processing NODE_11120_length_279_cov_14.702532:1-279 [pilon] NODE_6360_length_513_cov_5.448980:1-513 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 49, Coverage: 9, minDepth: 5 [pilon] Confirmed 409 of 513 bases (79.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6360_length_513_cov_5.448980:1-513 [pilon] Processing NODE_14025_length_243_cov_14.008197:1-243 [pilon] NODE_2037_length_1076_cov_34.100524:1-1076 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 710, Coverage: 69, minDepth: 17 [pilon] Confirmed 838 of 1076 bases (77.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2037_length_1076_cov_34.100524:1-1076 [pilon] Processing NODE_12213_length_243_cov_36.204918:1-243 [pilon] NODE_9135_length_360_cov_15.970711:1-360 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 78, Coverage: 11, minDepth: 5 [pilon] Confirmed 243 of 360 bases (67.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9135_length_360_cov_15.970711:1-360 [pilon] Processing NODE_2836_length_904_cov_17.805875:1-904 [pilon] NODE_4411_length_670_cov_27.459016:1-670 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 356, Coverage: 60, minDepth: 15 [pilon] Confirmed 551 of 670 bases (82.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4411_length_670_cov_27.459016:1-670 [pilon] Processing NODE_13216_length_243_cov_20.934426:1-243 [pilon] NODE_5082_length_611_cov_49.765306:1-611 log: [pilon] frags shovill.bam: coverage 93 [pilon] Total Reads: 549, Coverage: 93, minDepth: 23 [pilon] Confirmed 536 of 611 bases (87.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5082_length_611_cov_49.765306:1-611 [pilon] Processing NODE_12141_length_243_cov_40.286885:1-243 [pilon] NODE_13829_length_243_cov_15.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13829_length_243_cov_15.385246:1-243 [pilon] Processing NODE_12895_length_243_cov_24.122951:1-243 [pilon] NODE_13701_length_243_cov_16.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13701_length_243_cov_16.409836:1-243 [pilon] Processing NODE_15130_length_202_cov_6.567901:1-202 [pilon] NODE_5818_length_554_cov_4.524249:1-554 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 43, Coverage: 10, minDepth: 5 [pilon] Confirmed 413 of 554 bases (74.55%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5818_length_554_cov_4.524249:1-554 [pilon] Processing NODE_1783_length_1152_cov_17.016489:1-1152 [pilon] NODE_9878_length_330_cov_29.028708:1-330 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 154, Coverage: 27, minDepth: 7 [pilon] Confirmed 259 of 330 bases (78.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9878_length_330_cov_29.028708:1-330 [pilon] Processing NODE_13668_length_243_cov_16.803279:1-243 [pilon] NODE_10434_length_307_cov_8.500000:1-307 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 307 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10434_length_307_cov_8.500000:1-307 [pilon] Processing NODE_4221_length_691_cov_31.538596:1-691 [pilon] NODE_1462_length_1277_cov_10.687716:1-1277 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 298, Coverage: 27, minDepth: 7 [pilon] Confirmed 968 of 1277 bases (75.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1462_length_1277_cov_10.687716:1-1277 [pilon] Processing NODE_14917_length_243_cov_6.524590:1-243 [pilon] NODE_8561_length_390_cov_20.007435:1-390 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 111, Coverage: 7, minDepth: 5 [pilon] Confirmed 210 of 390 bases (53.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7999_length_418_cov_14.649832:1-418 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 94, Coverage: 21, minDepth: 5 [pilon] Confirmed 366 of 418 bases (87.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8561_length_390_cov_20.007435:1-390 [pilon] NODE_9506_length_345_cov_25.334821:1-345 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 136, Coverage: 16, minDepth: 5 [pilon] Confirmed 272 of 345 bases (78.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9506_length_345_cov_25.334821:1-345 [pilon] Finished processing NODE_7999_length_418_cov_14.649832:1-418 [pilon] Processing NODE_7321_length_452_cov_21.193353:1-452 [pilon] Processing NODE_11018_length_282_cov_45.397516:1-282 [pilon] Processing NODE_14137_length_243_cov_13.229508:1-243 [pilon] NODE_5649_length_567_cov_15.053812:1-567 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 165, Coverage: 15, minDepth: 5 [pilon] Confirmed 296 of 567 bases (52.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5649_length_567_cov_15.053812:1-567 [pilon] Processing NODE_5192_length_602_cov_22.137214:1-602 [pilon] NODE_8189_length_409_cov_0.892361:1-409 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 409 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8189_length_409_cov_0.892361:1-409 [pilon] Processing NODE_10635_length_300_cov_15.636872:1-300 [pilon] NODE_14031_length_243_cov_13.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14031_length_243_cov_13.975410:1-243 [pilon] Processing NODE_9276_length_354_cov_29.768240:1-354 [pilon] NODE_7081_length_466_cov_20.266667:1-466 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 119, Coverage: 18, minDepth: 5 [pilon] Confirmed 346 of 466 bases (74.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7081_length_466_cov_20.266667:1-466 [pilon] Processing NODE_10657_length_300_cov_6.424581:1-300 [pilon] NODE_11925_length_249_cov_10.664062:1-249 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11925_length_249_cov_10.664062:1-249 [pilon] Processing NODE_13659_length_243_cov_16.901639:1-243 [pilon] NODE_1913_length_1109_cov_15.961538:1-1109 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 464, Coverage: 44, minDepth: 11 [pilon] Confirmed 901 of 1109 bases (81.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1913_length_1109_cov_15.961538:1-1109 [pilon] Processing NODE_1762_length_1157_cov_34.956564:1-1157 [pilon] NODE_7465_length_445_cov_1.259259:1-445 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 445 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7465_length_445_cov_1.259259:1-445 [pilon] Processing NODE_3555_length_776_cov_54.525191:1-776 [pilon] NODE_3388_length_799_cov_18.988201:1-799 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 293, Coverage: 38, minDepth: 10 [pilon] Confirmed 676 of 799 bases (84.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3388_length_799_cov_18.988201:1-799 [pilon] Processing NODE_13540_length_243_cov_18.008197:1-243 [pilon] NODE_3380_length_800_cov_10.715758:1-800 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 181, Coverage: 19, minDepth: 5 [pilon] Confirmed 513 of 800 bases (64.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3380_length_800_cov_10.715758:1-800 [pilon] Processing NODE_1000_length_1494_cov_16.683176:1-1494 [pilon] NODE_9846_length_333_cov_8.127358:1-333 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 46, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 333 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9846_length_333_cov_8.127358:1-333 [pilon] Processing NODE_8190_length_409_cov_0.739583:1-409 [pilon] NODE_3603_length_768_cov_5.669243:1-768 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 101, Coverage: 17, minDepth: 5 [pilon] Confirmed 535 of 768 bases (69.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3603_length_768_cov_5.669243:1-768 [pilon] Processing NODE_6787_length_484_cov_1.055096:1-484 [pilon] NODE_8964_length_368_cov_26.016194:1-368 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 143, Coverage: 25, minDepth: 6 [pilon] Confirmed 294 of 368 bases (79.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8964_length_368_cov_26.016194:1-368 [pilon] Processing NODE_6834_length_481_cov_14.575000:1-481 [pilon] NODE_5155_length_605_cov_64.204545:1-605 log: [pilon] frags shovill.bam: coverage 116 [pilon] Total Reads: 715, Coverage: 116, minDepth: 29 [pilon] Confirmed 535 of 605 bases (88.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5155_length_605_cov_64.204545:1-605 [pilon] Processing NODE_1506_length_1255_cov_7.706349:1-1255 [pilon] NODE_1677_length_1190_cov_12.650140:1-1190 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 315, Coverage: 30, minDepth: 8 [pilon] Confirmed 809 of 1190 bases (67.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1677_length_1190_cov_12.650140:1-1190 [pilon] Processing NODE_11163_length_277_cov_6.294872:1-277 [pilon] NODE_14025_length_243_cov_14.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14025_length_243_cov_14.008197:1-243 [pilon] Processing NODE_10397_length_309_cov_14.946809:1-309 [pilon] NODE_53_length_3562_cov_13.454810:1-3562 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 1141, Coverage: 39, minDepth: 10 [pilon] Confirmed 2506 of 3562 bases (70.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_53_length_3562_cov_13.454810:1-3562 [pilon] Processing NODE_13920_length_243_cov_14.737705:1-243 [pilon] NODE_11120_length_279_cov_14.702532:1-279 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 51, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11120_length_279_cov_14.702532:1-279 [pilon] Processing NODE_12528_length_243_cov_28.713115:1-243 [pilon] NODE_12213_length_243_cov_36.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12213_length_243_cov_36.204918:1-243 [pilon] Processing NODE_9282_length_354_cov_22.506438:1-354 [pilon] NODE_2836_length_904_cov_17.805875:1-904 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 324, Coverage: 31, minDepth: 8 [pilon] Confirmed 634 of 904 bases (70.13%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2836_length_904_cov_17.805875:1-904 [pilon] Processing NODE_3967_length_718_cov_12.562814:1-718 [pilon] NODE_13216_length_243_cov_20.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13216_length_243_cov_20.934426:1-243 [pilon] Processing NODE_1031_length_1479_cov_20.027982:1-1479 [pilon] NODE_12141_length_243_cov_40.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12141_length_243_cov_40.286885:1-243 [pilon] Processing NODE_9003_length_366_cov_24.702041:1-366 [pilon] NODE_12895_length_243_cov_24.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12895_length_243_cov_24.122951:1-243 [pilon] Processing NODE_15138_length_198_cov_5.935065:1-198 [pilon] NODE_15130_length_202_cov_6.567901:1-202 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 202 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15130_length_202_cov_6.567901:1-202 [pilon] Processing NODE_66_length_3335_cov_19.546982:1-3335 [pilon] NODE_13668_length_243_cov_16.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13668_length_243_cov_16.803279:1-243 [pilon] Processing NODE_3173_length_836_cov_20.616783:1-836 [pilon] NODE_1783_length_1152_cov_17.016489:1-1152 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 413, Coverage: 33, minDepth: 8 [pilon] Confirmed 1001 of 1152 bases (86.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1783_length_1152_cov_17.016489:1-1152 [pilon] Processing NODE_2265_length_1018_cov_1.086957:1-1018 [pilon] NODE_4221_length_691_cov_31.538596:1-691 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 405, Coverage: 53, minDepth: 13 [pilon] Confirmed 638 of 691 bases (92.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4221_length_691_cov_31.538596:1-691 [pilon] Processing NODE_12423_length_243_cov_30.434426:1-243 [pilon] NODE_14917_length_243_cov_6.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14917_length_243_cov_6.524590:1-243 [pilon] Processing NODE_10981_length_285_cov_15.134146:1-285 [pilon] NODE_11018_length_282_cov_45.397516:1-282 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 141, Coverage: 12, minDepth: 5 [pilon] Confirmed 216 of 282 bases (76.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11018_length_282_cov_45.397516:1-282 [pilon] Processing NODE_12187_length_243_cov_37.245902:1-243 [pilon] NODE_14137_length_243_cov_13.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14137_length_243_cov_13.229508:1-243 [pilon] Processing NODE_11713_length_255_cov_29.134328:1-255 [pilon] NODE_5192_length_602_cov_22.137214:1-602 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 259, Coverage: 35, minDepth: 9 [pilon] Confirmed 529 of 602 bases (87.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5192_length_602_cov_22.137214:1-602 [pilon] Processing NODE_1880_length_1118_cov_40.758275:1-1118 [pilon] NODE_7321_length_452_cov_21.193353:1-452 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 147, Coverage: 19, minDepth: 5 [pilon] Confirmed 292 of 452 bases (64.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7321_length_452_cov_21.193353:1-452 [pilon] Processing NODE_2046_length_1074_cov_0.599161:1-1074 [pilon] NODE_13659_length_243_cov_16.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13659_length_243_cov_16.901639:1-243 [pilon] Processing NODE_6960_length_474_cov_1.943343:1-474 [pilon] NODE_10635_length_300_cov_15.636872:1-300 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 53, Coverage: 7, minDepth: 5 [pilon] Confirmed 203 of 300 bases (67.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10635_length_300_cov_15.636872:1-300 [pilon] Processing NODE_8132_length_411_cov_25.748276:1-411 [pilon] NODE_10657_length_300_cov_6.424581:1-300 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 24, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10657_length_300_cov_6.424581:1-300 [pilon] Processing NODE_330_length_2156_cov_31.485995:1-2156 [pilon] NODE_9276_length_354_cov_29.768240:1-354 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 138, Coverage: 16, minDepth: 5 [pilon] Confirmed 249 of 354 bases (70.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9276_length_354_cov_29.768240:1-354 [pilon] Processing NODE_5179_length_603_cov_15.159751:1-603 [pilon] NODE_6834_length_481_cov_14.575000:1-481 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 120, Coverage: 4, minDepth: 5 [pilon] Confirmed 239 of 481 bases (49.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6834_length_481_cov_14.575000:1-481 [pilon] Processing NODE_1332_length_1328_cov_6.426678:1-1328 [pilon] NODE_1762_length_1157_cov_34.956564:1-1157 log: [pilon] frags shovill.bam: coverage 82 [pilon] Total Reads: 853, Coverage: 82, minDepth: 21 [pilon] Confirmed 948 of 1157 bases (81.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1762_length_1157_cov_34.956564:1-1157 [pilon] Processing NODE_13630_length_243_cov_17.204918:1-243 [pilon] NODE_3555_length_776_cov_54.525191:1-776 log: [pilon] frags shovill.bam: coverage 108 [pilon] Total Reads: 811, Coverage: 108, minDepth: 27 [pilon] Confirmed 702 of 776 bases (90.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3555_length_776_cov_54.525191:1-776 [pilon] Processing NODE_14297_length_243_cov_11.852459:1-243 [pilon] NODE_6787_length_484_cov_1.055096:1-484 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 149 of 484 bases (30.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6787_length_484_cov_1.055096:1-484 [pilon] Processing NODE_13005_length_243_cov_22.844262:1-243 [pilon] NODE_11163_length_277_cov_6.294872:1-277 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 18, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 277 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11163_length_277_cov_6.294872:1-277 [pilon] Processing NODE_4318_length_679_cov_1.053763:1-679 [pilon] NODE_13540_length_243_cov_18.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13540_length_243_cov_18.008197:1-243 [pilon] Processing NODE_5636_length_568_cov_2.606264:1-568 [pilon] NODE_8190_length_409_cov_0.739583:1-409 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 9, Coverage: 3, minDepth: 5 [pilon] Confirmed 31 of 409 bases (7.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8190_length_409_cov_0.739583:1-409 [pilon] Processing NODE_348_length_2128_cov_16.395117:1-2128 [pilon] NODE_1506_length_1255_cov_7.706349:1-1255 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 304, Coverage: 25, minDepth: 6 [pilon] Confirmed 865 of 1255 bases (68.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1506_length_1255_cov_7.706349:1-1255 [pilon] Processing NODE_12880_length_243_cov_24.229508:1-243 [pilon] NODE_12528_length_243_cov_28.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12528_length_243_cov_28.713115:1-243 [pilon] Processing NODE_13827_length_243_cov_15.409836:1-243 [pilon] NODE_1000_length_1494_cov_16.683176:1-1494 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 551, Coverage: 40, minDepth: 10 [pilon] Confirmed 1215 of 1494 bases (81.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1000_length_1494_cov_16.683176:1-1494 [pilon] Processing NODE_13988_length_243_cov_14.245902:1-243 [pilon] NODE_10397_length_309_cov_14.946809:1-309 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 57, Coverage: 3, minDepth: 5 [pilon] Confirmed 92 of 309 bases (29.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10397_length_309_cov_14.946809:1-309 [pilon] Processing NODE_5198_length_602_cov_2.380457:1-602 [pilon] NODE_13920_length_243_cov_14.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13920_length_243_cov_14.737705:1-243 [pilon] Processing NODE_12873_length_243_cov_24.270492:1-243 [pilon] NODE_3967_length_718_cov_12.562814:1-718 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 270, Coverage: 49, minDepth: 12 [pilon] Confirmed 530 of 718 bases (73.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3967_length_718_cov_12.562814:1-718 [pilon] Processing NODE_4133_length_700_cov_17.975820:1-700 [pilon] NODE_9282_length_354_cov_22.506438:1-354 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 110, Coverage: 2, minDepth: 5 [pilon] Confirmed 125 of 354 bases (35.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9282_length_354_cov_22.506438:1-354 [pilon] Processing NODE_8385_length_400_cov_45.376344:1-400 [pilon] NODE_1031_length_1479_cov_20.027982:1-1479 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 645, Coverage: 38, minDepth: 10 [pilon] Confirmed 1257 of 1479 bases (84.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1031_length_1479_cov_20.027982:1-1479 [pilon] Processing NODE_6343_length_514_cov_17.905852:1-514 [pilon] NODE_9003_length_366_cov_24.702041:1-366 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 136, Coverage: 21, minDepth: 5 [pilon] Confirmed 294 of 366 bases (80.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9003_length_366_cov_24.702041:1-366 [pilon] Processing NODE_5163_length_605_cov_2.933884:1-605 [pilon] NODE_15138_length_198_cov_5.935065:1-198 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 198 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15138_length_198_cov_5.935065:1-198 [pilon] Processing NODE_6223_length_523_cov_1.266169:1-523 [pilon] NODE_3173_length_836_cov_20.616783:1-836 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 355, Coverage: 38, minDepth: 10 [pilon] Confirmed 742 of 836 bases (88.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3173_length_836_cov_20.616783:1-836 [pilon] Processing NODE_14125_length_243_cov_13.303279:1-243 [pilon] NODE_2265_length_1018_cov_1.086957:1-1018 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 31, Coverage: 4, minDepth: 5 [pilon] Confirmed 289 of 1018 bases (28.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2265_length_1018_cov_1.086957:1-1018 [pilon] Processing NODE_9853_length_332_cov_19.649289:1-332 [pilon] NODE_12423_length_243_cov_30.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12423_length_243_cov_30.434426:1-243 [pilon] Processing NODE_11902_length_249_cov_18.023438:1-249 [pilon] NODE_66_length_3335_cov_19.546982:1-3335 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 1552, Coverage: 49, minDepth: 12 [pilon] Confirmed 2934 of 3335 bases (87.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_66_length_3335_cov_19.546982:1-3335 [pilon] Processing NODE_7072_length_467_cov_0.757225:1-467 [pilon] NODE_12187_length_243_cov_37.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12187_length_243_cov_37.245902:1-243 [pilon] Processing NODE_12963_length_243_cov_23.327869:1-243 [pilon] NODE_10981_length_285_cov_15.134146:1-285 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 61, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10981_length_285_cov_15.134146:1-285 [pilon] Processing NODE_7638_length_435_cov_69.939490:1-435 [pilon] NODE_11713_length_255_cov_29.134328:1-255 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 81, Coverage: 7, minDepth: 5 [pilon] Confirmed 182 of 255 bases (71.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11713_length_255_cov_29.134328:1-255 [pilon] Processing NODE_9196_length_357_cov_27.190678:1-357 [pilon] NODE_2046_length_1074_cov_0.599161:1-1074 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 23, Coverage: 3, minDepth: 5 [pilon] Confirmed 200 of 1074 bases (18.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2046_length_1074_cov_0.599161:1-1074 [pilon] Processing NODE_1779_length_1153_cov_34.413760:1-1153 [pilon] NODE_1880_length_1118_cov_40.758275:1-1118 log: [pilon] frags shovill.bam: coverage 106 [pilon] Total Reads: 1015, Coverage: 106, minDepth: 27 [pilon] Confirmed 760 of 1118 bases (67.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1880_length_1118_cov_40.758275:1-1118 [pilon] Processing NODE_10632_length_300_cov_16.770950:1-300 [pilon] NODE_6960_length_474_cov_1.943343:1-474 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 219 of 474 bases (46.20%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6960_length_474_cov_1.943343:1-474 [pilon] Processing NODE_4911_length_625_cov_15.674603:1-625 [pilon] NODE_8132_length_411_cov_25.748276:1-411 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 133, Coverage: 18, minDepth: 5 [pilon] Confirmed 274 of 411 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8132_length_411_cov_25.748276:1-411 [pilon] Processing NODE_14109_length_243_cov_13.409836:1-243 [pilon] NODE_5179_length_603_cov_15.159751:1-603 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 141, Coverage: 20, minDepth: 5 [pilon] Confirmed 381 of 603 bases (63.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5179_length_603_cov_15.159751:1-603 [pilon] Processing NODE_12421_length_243_cov_30.516393:1-243 [pilon] NODE_13630_length_243_cov_17.204918:1-243 log: [pilon] NODE_14297_length_243_cov_11.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13630_length_243_cov_17.204918:1-243 [pilon] Processing NODE_8004_length_418_cov_6.407407:1-418 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14297_length_243_cov_11.852459:1-243 [pilon] Processing NODE_103_length_2980_cov_17.089542:1-2980 [pilon] NODE_5198_length_602_cov_2.380457:1-602 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 386 of 602 bases (64.12%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5198_length_602_cov_2.380457:1-602 [pilon] Processing NODE_13564_length_243_cov_17.778689:1-243 [pilon] NODE_13988_length_243_cov_14.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13988_length_243_cov_14.245902:1-243 [pilon] Processing NODE_8401_length_399_cov_26.226619:1-399 [pilon] NODE_1332_length_1328_cov_6.426678:1-1328 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 209, Coverage: 12, minDepth: 5 [pilon] Confirmed 1035 of 1328 bases (77.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1332_length_1328_cov_6.426678:1-1328 [pilon] Processing NODE_10446_length_306_cov_21.270270:1-306 [pilon] NODE_13827_length_243_cov_15.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13827_length_243_cov_15.409836:1-243 [pilon] Processing NODE_12442_length_243_cov_30.090164:1-243 [pilon] NODE_13005_length_243_cov_22.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13005_length_243_cov_22.844262:1-243 [pilon] Processing NODE_2087_length_1062_cov_18.222104:1-1062 [pilon] NODE_4318_length_679_cov_1.053763:1-679 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 172 of 679 bases (25.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4318_length_679_cov_1.053763:1-679 [pilon] Processing NODE_15240_length_131_cov_29.700000:1-131 [pilon] NODE_12880_length_243_cov_24.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12880_length_243_cov_24.229508:1-243 [pilon] Processing NODE_1856_length_1126_cov_35.100498:1-1126 [pilon] NODE_330_length_2156_cov_31.485995:1-2156 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1644, Coverage: 54, minDepth: 14 [pilon] Confirmed 1886 of 2156 bases (87.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_330_length_2156_cov_31.485995:1-2156 [pilon] Processing NODE_7326_length_452_cov_13.268882:1-452 [pilon] NODE_5636_length_568_cov_2.606264:1-568 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 33, Coverage: 8, minDepth: 5 [pilon] Confirmed 355 of 568 bases (62.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5636_length_568_cov_2.606264:1-568 [pilon] Processing NODE_8003_length_418_cov_6.525253:1-418 [pilon] NODE_12873_length_243_cov_24.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12873_length_243_cov_24.270492:1-243 [pilon] Processing NODE_10163_length_318_cov_23.695431:1-318 [pilon] NODE_348_length_2128_cov_16.395117:1-2128 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 803, Coverage: 40, minDepth: 10 [pilon] Confirmed 1567 of 2128 bases (73.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_348_length_2128_cov_16.395117:1-2128 [pilon] Processing NODE_6908_length_477_cov_12.727528:1-477 [pilon] NODE_4133_length_700_cov_17.975820:1-700 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 234, Coverage: 24, minDepth: 6 [pilon] Confirmed 551 of 700 bases (78.71%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4133_length_700_cov_17.975820:1-700 [pilon] Processing NODE_11646_length_258_cov_16.131387:1-258 [pilon] NODE_8385_length_400_cov_45.376344:1-400 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 308, Coverage: 51, minDepth: 13 [pilon] Confirmed 344 of 400 bases (86.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8385_length_400_cov_45.376344:1-400 [pilon] Processing NODE_12269_length_243_cov_34.090164:1-243 [pilon] NODE_6343_length_514_cov_17.905852:1-514 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 162, Coverage: 14, minDepth: 5 [pilon] Confirmed 379 of 514 bases (73.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6343_length_514_cov_17.905852:1-514 [pilon] Processing NODE_367_length_2098_cov_2.708144:1-2098 [pilon] NODE_5163_length_605_cov_2.933884:1-605 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 38, Coverage: 8, minDepth: 5 [pilon] Confirmed 437 of 605 bases (72.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5163_length_605_cov_2.933884:1-605 [pilon] Processing NODE_911_length_1549_cov_13.331232:1-1549 [pilon] NODE_6223_length_523_cov_1.266169:1-523 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 201 of 523 bases (38.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6223_length_523_cov_1.266169:1-523 [pilon] Processing NODE_9140_length_360_cov_14.359833:1-360 [pilon] NODE_12963_length_243_cov_23.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12963_length_243_cov_23.327869:1-243 [pilon] Processing NODE_5588_length_571_cov_12.044444:1-571 [pilon] NODE_7072_length_467_cov_0.757225:1-467 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 72 of 467 bases (15.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7072_length_467_cov_0.757225:1-467 [pilon] Processing NODE_5518_length_576_cov_8.701099:1-576 [pilon] NODE_11902_length_249_cov_18.023438:1-249 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 42, Coverage: 7, minDepth: 5 [pilon] Confirmed 194 of 249 bases (77.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11902_length_249_cov_18.023438:1-249 [pilon] Processing NODE_8999_length_366_cov_28.559184:1-366 [pilon] NODE_9196_length_357_cov_27.190678:1-357 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 145, Coverage: 13, minDepth: 5 [pilon] Confirmed 233 of 357 bases (65.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9196_length_357_cov_27.190678:1-357 [pilon] Processing NODE_7149_length_462_cov_31.548387:1-462 [pilon] NODE_9853_length_332_cov_19.649289:1-332 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 79, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 332 bases (39.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9853_length_332_cov_19.649289:1-332 [pilon] Processing NODE_12410_length_243_cov_30.762295:1-243 [pilon] NODE_14125_length_243_cov_13.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14125_length_243_cov_13.303279:1-243 [pilon] Processing NODE_6019_length_539_cov_23.925837:1-539 [pilon] NODE_10632_length_300_cov_16.770950:1-300 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 73, Coverage: 3, minDepth: 5 [pilon] Confirmed 110 of 300 bases (36.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10632_length_300_cov_16.770950:1-300 [pilon] Processing NODE_14273_length_243_cov_12.049180:1-243 [pilon] NODE_7638_length_435_cov_69.939490:1-435 log: [pilon] frags shovill.bam: coverage 93 [pilon] Total Reads: 456, Coverage: 93, minDepth: 23 [pilon] Confirmed 393 of 435 bases (90.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7638_length_435_cov_69.939490:1-435 [pilon] Processing NODE_4190_length_695_cov_1.754355:1-695 [pilon] NODE_1779_length_1153_cov_34.413760:1-1153 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 810, Coverage: 76, minDepth: 19 [pilon] Confirmed 1008 of 1153 bases (87.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1779_length_1153_cov_34.413760:1-1153 [pilon] Processing NODE_7931_length_421_cov_25.686667:1-421 [pilon] NODE_12421_length_243_cov_30.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12421_length_243_cov_30.516393:1-243 [pilon] Processing NODE_2331_length_1004_cov_16.648924:1-1004 [pilon] NODE_4911_length_625_cov_15.674603:1-625 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 168, Coverage: 30, minDepth: 8 [pilon] Confirmed 504 of 625 bases (80.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4911_length_625_cov_15.674603:1-625 [pilon] NODE_10446_length_306_cov_21.270270:1-306 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 90, Coverage: 3, minDepth: 5 [pilon] Confirmed 126 of 306 bases (41.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10446_length_306_cov_21.270270:1-306 [pilon] Processing NODE_14598_length_243_cov_9.401639:1-243 [pilon] Processing NODE_15159_length_185_cov_4.906250:1-185 [pilon] NODE_14109_length_243_cov_13.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14109_length_243_cov_13.409836:1-243 [pilon] Processing NODE_1787_length_1151_cov_20.908738:1-1151 [pilon] NODE_8004_length_418_cov_6.407407:1-418 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 418 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8004_length_418_cov_6.407407:1-418 [pilon] Processing NODE_658_length_1740_cov_4.126004:1-1740 [pilon] NODE_8401_length_399_cov_26.226619:1-399 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 157, Coverage: 20, minDepth: 5 [pilon] Confirmed 287 of 399 bases (71.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8401_length_399_cov_26.226619:1-399 [pilon] Processing NODE_13761_length_243_cov_15.959016:1-243 [pilon] NODE_15240_length_131_cov_29.700000:1-131 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 131 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15240_length_131_cov_29.700000:1-131 [pilon] Processing NODE_11082_length_280_cov_9.566038:1-280 [pilon] NODE_2087_length_1062_cov_18.222104:1-1062 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 410, Coverage: 25, minDepth: 6 [pilon] Confirmed 930 of 1062 bases (87.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2087_length_1062_cov_18.222104:1-1062 [pilon] Processing NODE_6421_length_509_cov_2.969072:1-509 [pilon] NODE_13564_length_243_cov_17.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13564_length_243_cov_17.778689:1-243 [pilon] Processing NODE_3245_length_825_cov_21.883523:1-825 [pilon] NODE_103_length_2980_cov_17.089542:1-2980 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 1106, Coverage: 48, minDepth: 12 [pilon] Confirmed 2575 of 2980 bases (86.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_103_length_2980_cov_17.089542:1-2980 [pilon] Processing NODE_2020_length_1081_cov_12.026042:1-1081 [pilon] NODE_12442_length_243_cov_30.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12442_length_243_cov_30.090164:1-243 [pilon] Processing NODE_3483_length_787_cov_21.381381:1-787 [pilon] NODE_6908_length_477_cov_12.727528:1-477 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 133, Coverage: 10, minDepth: 5 [pilon] Confirmed 331 of 477 bases (69.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6908_length_477_cov_12.727528:1-477 [pilon] Processing NODE_9581_length_342_cov_23.533937:1-342 [pilon] NODE_8003_length_418_cov_6.525253:1-418 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 32, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 418 bases (31.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8003_length_418_cov_6.525253:1-418 [pilon] Processing NODE_4771_length_637_cov_47.127907:1-637 [pilon] NODE_1856_length_1126_cov_35.100498:1-1126 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 849, Coverage: 68, minDepth: 17 [pilon] Confirmed 987 of 1126 bases (87.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1856_length_1126_cov_35.100498:1-1126 [pilon] Processing NODE_9862_length_331_cov_20.771429:1-331 [pilon] NODE_11646_length_258_cov_16.131387:1-258 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 58, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 258 bases (50.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11646_length_258_cov_16.131387:1-258 [pilon] Processing NODE_570_length_1834_cov_21.723876:1-1834 [pilon] NODE_7326_length_452_cov_13.268882:1-452 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 114, Coverage: 10, minDepth: 5 [pilon] Confirmed 361 of 452 bases (79.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7326_length_452_cov_13.268882:1-452 [pilon] Processing NODE_9828_length_333_cov_16.679245:1-333 [pilon] NODE_10163_length_318_cov_23.695431:1-318 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 113, Coverage: 16, minDepth: 5 [pilon] Confirmed 291 of 318 bases (91.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10163_length_318_cov_23.695431:1-318 [pilon] Processing NODE_10157_length_318_cov_35.355330:1-318 [pilon] NODE_12269_length_243_cov_34.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12269_length_243_cov_34.090164:1-243 [pilon] Processing NODE_3565_length_774_cov_45.900459:1-774 [pilon] NODE_9140_length_360_cov_14.359833:1-360 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 73, Coverage: 7, minDepth: 5 [pilon] Confirmed 181 of 360 bases (50.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9140_length_360_cov_14.359833:1-360 [pilon] Processing NODE_11253_length_273_cov_23.006579:1-273 [pilon] NODE_367_length_2098_cov_2.708144:1-2098 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 162, Coverage: 10, minDepth: 5 [pilon] Confirmed 1824 of 2098 bases (86.94%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_367_length_2098_cov_2.708144:1-2098 [pilon] Processing NODE_789_length_1630_cov_28.007952:1-1630 [pilon] NODE_911_length_1549_cov_13.331232:1-1549 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 494, Coverage: 32, minDepth: 8 [pilon] Confirmed 1388 of 1549 bases (89.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_911_length_1549_cov_13.331232:1-1549 [pilon] Processing NODE_14035_length_243_cov_13.934426:1-243 [pilon] NODE_5588_length_571_cov_12.044444:1-571 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 118, Coverage: 22, minDepth: 6 [pilon] Confirmed 428 of 571 bases (74.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5588_length_571_cov_12.044444:1-571 [pilon] Processing NODE_5763_length_559_cov_0.726027:1-559 [pilon] NODE_7149_length_462_cov_31.548387:1-462 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 229, Coverage: 41, minDepth: 10 [pilon] Confirmed 367 of 462 bases (79.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7149_length_462_cov_31.548387:1-462 [pilon] Processing NODE_9985_length_326_cov_36.234146:1-326 [pilon] NODE_8999_length_366_cov_28.559184:1-366 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 161, Coverage: 13, minDepth: 5 [pilon] Confirmed 244 of 366 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8999_length_366_cov_28.559184:1-366 [pilon] Processing NODE_13853_length_243_cov_15.295082:1-243 [pilon] NODE_5518_length_576_cov_8.701099:1-576 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 137, Coverage: 15, minDepth: 5 [pilon] Confirmed 377 of 576 bases (65.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5518_length_576_cov_8.701099:1-576 [pilon] Processing NODE_6388_length_511_cov_13.615385:1-511 [pilon] NODE_6019_length_539_cov_23.925837:1-539 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 228, Coverage: 36, minDepth: 9 [pilon] Confirmed 446 of 539 bases (82.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6019_length_539_cov_23.925837:1-539 [pilon] Processing NODE_9662_length_339_cov_17.151376:1-339 [pilon] NODE_12410_length_243_cov_30.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12410_length_243_cov_30.762295:1-243 [pilon] Processing NODE_13740_length_243_cov_16.114754:1-243 [pilon] NODE_14273_length_243_cov_12.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14273_length_243_cov_12.049180:1-243 [pilon] Processing NODE_966_length_1515_cov_4.102582:1-1515 [pilon] NODE_7931_length_421_cov_25.686667:1-421 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 179, Coverage: 27, minDepth: 7 [pilon] Confirmed 385 of 421 bases (91.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7931_length_421_cov_25.686667:1-421 [pilon] Processing NODE_9188_length_357_cov_32.783898:1-357 [pilon] NODE_4190_length_695_cov_1.754355:1-695 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 449 of 695 bases (64.60%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4190_length_695_cov_1.754355:1-695 [pilon] Processing NODE_8659_length_384_cov_19.958175:1-384 [pilon] NODE_15159_length_185_cov_4.906250:1-185 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 185 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15159_length_185_cov_4.906250:1-185 [pilon] Processing NODE_60_length_3436_cov_34.035294:1-3436 [pilon] NODE_14598_length_243_cov_9.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14598_length_243_cov_9.401639:1-243 [pilon] Processing NODE_14247_length_243_cov_12.270492:1-243 [pilon] NODE_1787_length_1151_cov_20.908738:1-1151 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 493, Coverage: 42, minDepth: 11 [pilon] Confirmed 1028 of 1151 bases (89.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1787_length_1151_cov_20.908738:1-1151 [pilon] Processing NODE_13678_length_243_cov_16.721311:1-243 [pilon] NODE_2331_length_1004_cov_16.648924:1-1004 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 396, Coverage: 42, minDepth: 11 [pilon] Confirmed 877 of 1004 bases (87.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2331_length_1004_cov_16.648924:1-1004 [pilon] Processing NODE_4012_length_714_cov_19.758853:1-714 [pilon] NODE_13761_length_243_cov_15.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13761_length_243_cov_15.959016:1-243 [pilon] Processing NODE_13973_length_243_cov_14.303279:1-243 [pilon] NODE_658_length_1740_cov_4.126004:1-1740 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 176, Coverage: 13, minDepth: 5 [pilon] Confirmed 1558 of 1740 bases (89.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_658_length_1740_cov_4.126004:1-1740 [pilon] Processing NODE_11631_length_258_cov_22.503650:1-258 [pilon] NODE_6421_length_509_cov_2.969072:1-509 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 35, Coverage: 8, minDepth: 5 [pilon] Confirmed 348 of 509 bases (68.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6421_length_509_cov_2.969072:1-509 [pilon] Processing NODE_6066_length_534_cov_21.898305:1-534 [pilon] NODE_11082_length_280_cov_9.566038:1-280 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 280 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11082_length_280_cov_9.566038:1-280 [pilon] Processing NODE_5409_length_583_cov_13.694805:1-583 [pilon] NODE_3245_length_825_cov_21.883523:1-825 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 395, Coverage: 34, minDepth: 9 [pilon] Confirmed 608 of 825 bases (73.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3245_length_825_cov_21.883523:1-825 [pilon] Processing NODE_250_length_2340_cov_25.841370:1-2340 [pilon] NODE_9581_length_342_cov_23.533937:1-342 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 114, Coverage: 13, minDepth: 5 [pilon] Confirmed 251 of 342 bases (73.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9581_length_342_cov_23.533937:1-342 [pilon] Processing NODE_1586_length_1224_cov_20.341795:1-1224 [pilon] NODE_2020_length_1081_cov_12.026042:1-1081 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 373, Coverage: 27, minDepth: 7 [pilon] Confirmed 961 of 1081 bases (88.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2020_length_1081_cov_12.026042:1-1081 [pilon] Processing NODE_10613_length_300_cov_24.927374:1-300 [pilon] NODE_3483_length_787_cov_21.381381:1-787 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 369, Coverage: 25, minDepth: 6 [pilon] Confirmed 615 of 787 bases (78.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3483_length_787_cov_21.381381:1-787 [pilon] Processing NODE_13242_length_243_cov_20.704918:1-243 [pilon] NODE_4771_length_637_cov_47.127907:1-637 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 535, Coverage: 77, minDepth: 19 [pilon] Confirmed 472 of 637 bases (74.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4771_length_637_cov_47.127907:1-637 [pilon] Processing NODE_5782_length_557_cov_1.561927:1-557 [pilon] NODE_9862_length_331_cov_20.771429:1-331 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 87, Coverage: 8, minDepth: 5 [pilon] Confirmed 217 of 331 bases (65.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9862_length_331_cov_20.771429:1-331 [pilon] Processing NODE_3102_length_852_cov_18.393981:1-852 [pilon] NODE_9828_length_333_cov_16.679245:1-333 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 84, Coverage: 7, minDepth: 5 [pilon] Confirmed 165 of 333 bases (49.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9828_length_333_cov_16.679245:1-333 [pilon] Processing NODE_1142_length_1422_cov_16.167563:1-1422 [pilon] NODE_10157_length_318_cov_35.355330:1-318 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 166, Coverage: 23, minDepth: 6 [pilon] Confirmed 296 of 318 bases (93.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10157_length_318_cov_35.355330:1-318 [pilon] Processing NODE_6513_length_503_cov_2.227749:1-503 [pilon] NODE_3565_length_774_cov_45.900459:1-774 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 663, Coverage: 90, minDepth: 23 [pilon] Confirmed 656 of 774 bases (84.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_570_length_1834_cov_21.723876:1-1834 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 850, Coverage: 42, minDepth: 11 [pilon] Confirmed 1552 of 1834 bases (84.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_570_length_1834_cov_21.723876:1-1834 [pilon] Processing NODE_6864_length_480_cov_9.821727:1-480 [pilon] Finished processing NODE_3565_length_774_cov_45.900459:1-774 [pilon] Processing NODE_4930_length_624_cov_2.516899:1-624 [pilon] NODE_11253_length_273_cov_23.006579:1-273 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 72, Coverage: 6, minDepth: 5 [pilon] Confirmed 190 of 273 bases (69.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11253_length_273_cov_23.006579:1-273 [pilon] Processing NODE_14584_length_243_cov_9.565574:1-243 [pilon] NODE_14035_length_243_cov_13.934426:1-243 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 35, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14035_length_243_cov_13.934426:1-243 [pilon] Processing NODE_5427_length_582_cov_17.173536:1-582 [pilon] NODE_789_length_1630_cov_28.007952:1-1630 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 967, Coverage: 53, minDepth: 13 [pilon] Confirmed 1459 of 1630 bases (89.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_789_length_1630_cov_28.007952:1-1630 [pilon] Processing NODE_13130_length_243_cov_21.663934:1-243 [pilon] NODE_5763_length_559_cov_0.726027:1-559 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 559 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5763_length_559_cov_0.726027:1-559 [pilon] Processing NODE_4787_length_636_cov_13.219417:1-636 [pilon] NODE_13853_length_243_cov_15.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13853_length_243_cov_15.295082:1-243 [pilon] Processing NODE_12843_length_243_cov_24.581967:1-243 [pilon] NODE_9985_length_326_cov_36.234146:1-326 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 171, Coverage: 16, minDepth: 5 [pilon] Confirmed 243 of 326 bases (74.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9985_length_326_cov_36.234146:1-326 [pilon] Processing NODE_3670_length_759_cov_17.619122:1-759 [pilon] NODE_9662_length_339_cov_17.151376:1-339 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 89, Coverage: 11, minDepth: 5 [pilon] Confirmed 251 of 339 bases (74.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9662_length_339_cov_17.151376:1-339 [pilon] Processing NODE_761_length_1659_cov_38.705462:1-1659 [pilon] NODE_6388_length_511_cov_13.615385:1-511 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 132, Coverage: 25, minDepth: 6 [pilon] Confirmed 411 of 511 bases (80.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6388_length_511_cov_13.615385:1-511 [pilon] Processing NODE_7514_length_442_cov_40.146417:1-442 [pilon] NODE_8659_length_384_cov_19.958175:1-384 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 104, Coverage: 15, minDepth: 5 [pilon] Confirmed 264 of 384 bases (68.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8659_length_384_cov_19.958175:1-384 [pilon] Processing NODE_11736_length_255_cov_20.738806:1-255 [pilon] NODE_13740_length_243_cov_16.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13740_length_243_cov_16.114754:1-243 [pilon] Processing NODE_347_length_2129_cov_13.608068:1-2129 [pilon] NODE_966_length_1515_cov_4.102582:1-1515 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 148, Coverage: 13, minDepth: 5 [pilon] Confirmed 1295 of 1515 bases (85.48%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_966_length_1515_cov_4.102582:1-1515 [pilon] Processing NODE_13486_length_243_cov_18.508197:1-243 [pilon] NODE_9188_length_357_cov_32.783898:1-357 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 127, Coverage: 14, minDepth: 5 [pilon] Confirmed 226 of 357 bases (63.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9188_length_357_cov_32.783898:1-357 [pilon] Processing NODE_15076_length_235_cov_9.780702:1-235 [pilon] NODE_14247_length_243_cov_12.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14247_length_243_cov_12.270492:1-243 [pilon] Processing NODE_12253_length_243_cov_34.573770:1-243 [pilon] NODE_13678_length_243_cov_16.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13678_length_243_cov_16.721311:1-243 [pilon] Processing NODE_11240_length_273_cov_43.493421:1-273 [pilon] NODE_11631_length_258_cov_22.503650:1-258 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 62, Coverage: 6, minDepth: 5 [pilon] Confirmed 174 of 258 bases (67.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11631_length_258_cov_22.503650:1-258 [pilon] Processing NODE_9106_length_361_cov_17.083333:1-361 [pilon] NODE_4012_length_714_cov_19.758853:1-714 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 305, Coverage: 37, minDepth: 9 [pilon] Confirmed 630 of 714 bases (88.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4012_length_714_cov_19.758853:1-714 [pilon] Processing NODE_2127_length_1052_cov_27.691729:1-1052 [pilon] NODE_60_length_3436_cov_34.035294:1-3436 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 2478, Coverage: 91, minDepth: 23 [pilon] Confirmed 2921 of 3436 bases (85.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_60_length_3436_cov_34.035294:1-3436 [pilon] Processing NODE_5030_length_617_cov_0.562500:1-617 [pilon] NODE_13973_length_243_cov_14.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13973_length_243_cov_14.303279:1-243 [pilon] Processing NODE_5880_length_549_cov_17.518692:1-549 [pilon] NODE_5409_length_583_cov_13.694805:1-583 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 137, Coverage: 22, minDepth: 6 [pilon] Confirmed 452 of 583 bases (77.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5409_length_583_cov_13.694805:1-583 [pilon] Processing NODE_11102_length_279_cov_25.487342:1-279 [pilon] NODE_6066_length_534_cov_21.898305:1-534 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 212, Coverage: 25, minDepth: 6 [pilon] Confirmed 466 of 534 bases (87.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6066_length_534_cov_21.898305:1-534 [pilon] Processing NODE_1774_length_1154_cov_51.313650:1-1154 [pilon] NODE_5782_length_557_cov_1.561927:1-557 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 225 of 557 bases (40.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5782_length_557_cov_1.561927:1-557 [pilon] Processing NODE_1807_length_1145_cov_4.465820:1-1145 [pilon] NODE_10613_length_300_cov_24.927374:1-300 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 95, Coverage: 9, minDepth: 5 [pilon] Confirmed 190 of 300 bases (63.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10613_length_300_cov_24.927374:1-300 [pilon] Processing NODE_3048_length_864_cov_1.409152:1-864 [pilon] NODE_250_length_2340_cov_25.841370:1-2340 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 1311, Coverage: 58, minDepth: 15 [pilon] Confirmed 2198 of 2340 bases (93.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_250_length_2340_cov_25.841370:1-2340 [pilon] Processing NODE_58_length_3471_cov_2.893731:1-3471 [pilon] NODE_13242_length_243_cov_20.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13242_length_243_cov_20.704918:1-243 [pilon] Processing NODE_8609_length_387_cov_29.830827:1-387 [pilon] NODE_3102_length_852_cov_18.393981:1-852 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 332, Coverage: 31, minDepth: 8 [pilon] Confirmed 733 of 852 bases (86.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3102_length_852_cov_18.393981:1-852 [pilon] Processing NODE_2832_length_905_cov_3.719388:1-905 [pilon] NODE_1586_length_1224_cov_20.341795:1-1224 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 595, Coverage: 51, minDepth: 13 [pilon] Confirmed 830 of 1224 bases (67.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1586_length_1224_cov_20.341795:1-1224 [pilon] Processing NODE_2681_length_932_cov_15.416769:1-932 [pilon] NODE_6513_length_503_cov_2.227749:1-503 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 42, Coverage: 9, minDepth: 5 [pilon] Confirmed 314 of 503 bases (62.43%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6513_length_503_cov_2.227749:1-503 [pilon] Processing NODE_7154_length_462_cov_20.985337:1-462 [pilon] NODE_1142_length_1422_cov_16.167563:1-1422 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 495, Coverage: 38, minDepth: 10 [pilon] Confirmed 1236 of 1422 bases (86.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1142_length_1422_cov_16.167563:1-1422 [pilon] Processing NODE_9752_length_336_cov_16.046512:1-336 [pilon] NODE_6864_length_480_cov_9.821727:1-480 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 85, Coverage: 5, minDepth: 5 [pilon] Confirmed 271 of 480 bases (56.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6864_length_480_cov_9.821727:1-480 [pilon] Processing NODE_13788_length_243_cov_15.786885:1-243 [pilon] NODE_4930_length_624_cov_2.516899:1-624 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 39, Coverage: 8, minDepth: 5 [pilon] Confirmed 453 of 624 bases (72.60%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4930_length_624_cov_2.516899:1-624 [pilon] Processing NODE_11953_length_247_cov_13.761905:1-247 [pilon] NODE_14584_length_243_cov_9.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14584_length_243_cov_9.565574:1-243 [pilon] Processing NODE_13406_length_243_cov_19.270492:1-243 [pilon] NODE_5427_length_582_cov_17.173536:1-582 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 182, Coverage: 32, minDepth: 8 [pilon] Confirmed 475 of 582 bases (81.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5427_length_582_cov_17.173536:1-582 [pilon] Processing NODE_13132_length_243_cov_21.655738:1-243 [pilon] NODE_13130_length_243_cov_21.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13130_length_243_cov_21.663934:1-243 [pilon] Processing NODE_12112_length_243_cov_45.663934:1-243 [pilon] NODE_4787_length_636_cov_13.219417:1-636 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 178, Coverage: 21, minDepth: 5 [pilon] Confirmed 385 of 636 bases (60.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4787_length_636_cov_13.219417:1-636 [pilon] Processing NODE_11310_length_271_cov_8.746667:1-271 [pilon] NODE_3670_length_759_cov_17.619122:1-759 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 281, Coverage: 30, minDepth: 8 [pilon] Confirmed 718 of 759 bases (94.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3670_length_759_cov_17.619122:1-759 [pilon] Processing NODE_3666_length_759_cov_31.177116:1-759 [pilon] NODE_12843_length_243_cov_24.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12843_length_243_cov_24.581967:1-243 [pilon] Processing NODE_5805_length_555_cov_1.698157:1-555 [pilon] NODE_7514_length_442_cov_40.146417:1-442 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 286, Coverage: 56, minDepth: 14 [pilon] Confirmed 370 of 442 bases (83.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7514_length_442_cov_40.146417:1-442 [pilon] Processing NODE_10129_length_321_cov_5.745000:1-321 [pilon] NODE_11736_length_255_cov_20.738806:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 71, Coverage: 4, minDepth: 5 [pilon] Confirmed 114 of 255 bases (44.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11736_length_255_cov_20.738806:1-255 [pilon] Processing NODE_1167_length_1410_cov_23.579519:1-1410 [pilon] NODE_761_length_1659_cov_38.705462:1-1659 log: [pilon] frags shovill.bam: coverage 105 [pilon] Total Reads: 1405, Coverage: 105, minDepth: 26 [pilon] Confirmed 1418 of 1659 bases (85.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_761_length_1659_cov_38.705462:1-1659 [pilon] Processing NODE_1234_length_1372_cov_11.457234:1-1372 [pilon] NODE_347_length_2129_cov_13.608068:1-2129 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 661, Coverage: 36, minDepth: 9 [pilon] Confirmed 1916 of 2129 bases (90.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_347_length_2129_cov_13.608068:1-2129 [pilon] Processing NODE_11354_length_270_cov_9.630872:1-270 [pilon] NODE_15076_length_235_cov_9.780702:1-235 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 27, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 235 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15076_length_235_cov_9.780702:1-235 [pilon] Processing NODE_2475_length_971_cov_13.691765:1-971 [pilon] NODE_13486_length_243_cov_18.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13486_length_243_cov_18.508197:1-243 [pilon] Processing NODE_690_length_1710_cov_18.876652:1-1710 [pilon] NODE_11240_length_273_cov_43.493421:1-273 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 140, Coverage: 10, minDepth: 5 [pilon] Confirmed 216 of 273 bases (79.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11240_length_273_cov_43.493421:1-273 [pilon] Processing NODE_14773_length_243_cov_7.959016:1-243 [pilon] NODE_12253_length_243_cov_34.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12253_length_243_cov_34.573770:1-243 [pilon] Processing NODE_12842_length_243_cov_24.590164:1-243 [pilon] NODE_9106_length_361_cov_17.083333:1-361 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 84, Coverage: 16, minDepth: 5 [pilon] Confirmed 271 of 361 bases (75.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9106_length_361_cov_17.083333:1-361 [pilon] Processing NODE_7315_length_452_cov_50.380665:1-452 [pilon] NODE_5030_length_617_cov_0.562500:1-617 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 15 of 617 bases (2.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5030_length_617_cov_0.562500:1-617 [pilon] Processing NODE_9389_length_351_cov_8.808696:1-351 [pilon] NODE_11102_length_279_cov_25.487342:1-279 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 88, Coverage: 10, minDepth: 5 [pilon] Confirmed 209 of 279 bases (74.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11102_length_279_cov_25.487342:1-279 [pilon] Processing NODE_8531_length_392_cov_32.033210:1-392 [pilon] NODE_2127_length_1052_cov_27.691729:1-1052 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 584, Coverage: 59, minDepth: 15 [pilon] Confirmed 878 of 1052 bases (83.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2127_length_1052_cov_27.691729:1-1052 [pilon] Processing NODE_4171_length_697_cov_0.699653:1-697 [pilon] NODE_11953_length_247_cov_13.761905:1-247 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 247 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11953_length_247_cov_13.761905:1-247 [pilon] Processing NODE_13846_length_243_cov_15.327869:1-243 [pilon] NODE_8609_length_387_cov_29.830827:1-387 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 163, Coverage: 16, minDepth: 5 [pilon] Confirmed 243 of 387 bases (62.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8609_length_387_cov_29.830827:1-387 [pilon] Processing NODE_6574_length_498_cov_28.466844:1-498 [pilon] NODE_3048_length_864_cov_1.409152:1-864 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 35, Coverage: 5, minDepth: 5 [pilon] Confirmed 450 of 864 bases (52.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3048_length_864_cov_1.409152:1-864 [pilon] Processing NODE_3351_length_805_cov_22.559942:1-805 [pilon] NODE_2832_length_905_cov_3.719388:1-905 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 70, Coverage: 10, minDepth: 5 [pilon] Confirmed 778 of 905 bases (85.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2832_length_905_cov_3.719388:1-905 [pilon] Processing NODE_4712_length_642_cov_23.103647:1-642 [pilon] NODE_5880_length_549_cov_17.518692:1-549 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 188, Coverage: 14, minDepth: 5 [pilon] Confirmed 321 of 549 bases (58.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5880_length_549_cov_17.518692:1-549 [pilon] Processing NODE_9199_length_357_cov_23.529661:1-357 [pilon] NODE_1807_length_1145_cov_4.465820:1-1145 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 105, Coverage: 12, minDepth: 5 [pilon] Confirmed 685 of 1145 bases (59.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1807_length_1145_cov_4.465820:1-1145 [pilon] Processing NODE_11210_length_276_cov_7.509677:1-276 [pilon] NODE_9752_length_336_cov_16.046512:1-336 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 83, Coverage: 9, minDepth: 5 [pilon] Confirmed 214 of 336 bases (63.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9752_length_336_cov_16.046512:1-336 [pilon] Processing NODE_12736_length_243_cov_25.737705:1-243 [pilon] NODE_1774_length_1154_cov_51.313650:1-1154 log: [pilon] frags shovill.bam: coverage 119 [pilon] Total Reads: 1244, Coverage: 119, minDepth: 30 [pilon] Confirmed 1020 of 1154 bases (88.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1774_length_1154_cov_51.313650:1-1154 [pilon] Processing NODE_6143_length_528_cov_40.213759:1-528 [pilon] NODE_7154_length_462_cov_20.985337:1-462 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 158, Coverage: 25, minDepth: 6 [pilon] Confirmed 348 of 462 bases (75.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7154_length_462_cov_20.985337:1-462 [pilon] Processing NODE_5178_length_603_cov_16.917012:1-603 [pilon] NODE_2681_length_932_cov_15.416769:1-932 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 296, Coverage: 41, minDepth: 10 [pilon] Confirmed 719 of 932 bases (77.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2681_length_932_cov_15.416769:1-932 [pilon] Processing NODE_14724_length_243_cov_8.393443:1-243 [pilon] NODE_58_length_3471_cov_2.893731:1-3471 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 274, Coverage: 10, minDepth: 5 [pilon] Confirmed 2870 of 3471 bases (82.69%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_58_length_3471_cov_2.893731:1-3471 [pilon] Processing NODE_13161_length_243_cov_21.442623:1-243 [pilon] NODE_13788_length_243_cov_15.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13788_length_243_cov_15.786885:1-243 [pilon] Processing NODE_937_length_1537_cov_12.387006:1-1537 [pilon] NODE_13406_length_243_cov_19.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13406_length_243_cov_19.270492:1-243 [pilon] Processing NODE_389_length_2062_cov_1.777950:1-2062 [pilon] NODE_13132_length_243_cov_21.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13132_length_243_cov_21.655738:1-243 [pilon] Processing NODE_4178_length_696_cov_16.713043:1-696 [pilon] NODE_12112_length_243_cov_45.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 130, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12112_length_243_cov_45.663934:1-243 [pilon] Processing NODE_5766_length_558_cov_15.302059:1-558 [pilon] NODE_11354_length_270_cov_9.630872:1-270 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 44, Coverage: 3, minDepth: 5 [pilon] Confirmed 96 of 270 bases (35.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11354_length_270_cov_9.630872:1-270 [pilon] Processing NODE_5226_length_599_cov_3.983264:1-599 [pilon] NODE_11310_length_271_cov_8.746667:1-271 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 25, Coverage: 8, minDepth: 5 [pilon] Confirmed 209 of 271 bases (77.12%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11310_length_271_cov_8.746667:1-271 [pilon] Processing NODE_1577_length_1228_cov_8.923216:1-1228 [pilon] NODE_3666_length_759_cov_31.177116:1-759 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 474, Coverage: 46, minDepth: 12 [pilon] Confirmed 610 of 759 bases (80.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3666_length_759_cov_31.177116:1-759 [pilon] Processing NODE_11519_length_263_cov_16.105634:1-263 [pilon] NODE_5805_length_555_cov_1.698157:1-555 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 336 of 555 bases (60.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5805_length_555_cov_1.698157:1-555 [pilon] Processing NODE_9664_length_339_cov_16.605505:1-339 [pilon] NODE_10129_length_321_cov_5.745000:1-321 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 28, Coverage: 2, minDepth: 5 [pilon] Confirmed 52 of 321 bases (16.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10129_length_321_cov_5.745000:1-321 [pilon] Processing NODE_14325_length_243_cov_11.672131:1-243 [pilon] NODE_1234_length_1372_cov_11.457234:1-1372 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 359, Coverage: 20, minDepth: 5 [pilon] Confirmed 1287 of 1372 bases (93.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1234_length_1372_cov_11.457234:1-1372 [pilon] Processing NODE_12932_length_243_cov_23.614754:1-243 [pilon] NODE_2475_length_971_cov_13.691765:1-971 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 275, Coverage: 24, minDepth: 6 [pilon] Confirmed 873 of 971 bases (89.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2475_length_971_cov_13.691765:1-971 [pilon] Processing NODE_15266_length_122_cov_1976.000000:1-122 [pilon] NODE_1167_length_1410_cov_23.579519:1-1410 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 608, Coverage: 14, minDepth: 5 [pilon] Confirmed 789 of 1410 bases (55.96%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1167_length_1410_cov_23.579519:1-1410 [pilon] Processing NODE_42_length_3864_cov_21.510019:1-3864 [pilon] NODE_13846_length_243_cov_15.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13846_length_243_cov_15.327869:1-243 [pilon] Processing NODE_2601_length_945_cov_12.825243:1-945 [pilon] NODE_12842_length_243_cov_24.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12842_length_243_cov_24.590164:1-243 [pilon] Processing NODE_187_length_2555_cov_2.036976:1-2555 [pilon] NODE_690_length_1710_cov_18.876652:1-1710 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 814, Coverage: 30, minDepth: 8 [pilon] Confirmed 1529 of 1710 bases (89.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_690_length_1710_cov_18.876652:1-1710 [pilon] Processing NODE_1135_length_1423_cov_35.870200:1-1423 [pilon] NODE_14773_length_243_cov_7.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14773_length_243_cov_7.959016:1-243 [pilon] Processing NODE_8399_length_399_cov_33.111511:1-399 [pilon] NODE_9389_length_351_cov_8.808696:1-351 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 58, Coverage: 4, minDepth: 5 [pilon] Confirmed 128 of 351 bases (36.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9389_length_351_cov_8.808696:1-351 [pilon] Processing NODE_7547_length_441_cov_15.415625:1-441 [pilon] NODE_7315_length_452_cov_50.380665:1-452 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 372, Coverage: 66, minDepth: 17 [pilon] Confirmed 384 of 452 bases (84.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7315_length_452_cov_50.380665:1-452 [pilon] Processing NODE_2814_length_907_cov_2.586514:1-907 [pilon] NODE_8531_length_392_cov_32.033210:1-392 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 187, Coverage: 29, minDepth: 7 [pilon] Confirmed 334 of 392 bases (85.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8531_length_392_cov_32.033210:1-392 [pilon] Processing NODE_2215_length_1029_cov_22.694934:1-1029 [pilon] NODE_11210_length_276_cov_7.509677:1-276 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 26, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11210_length_276_cov_7.509677:1-276 [pilon] Processing NODE_10295_length_313_cov_29.520833:1-313 [pilon] NODE_4171_length_697_cov_0.699653:1-697 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 697 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4171_length_697_cov_0.699653:1-697 [pilon] Processing NODE_1588_length_1224_cov_2.134180:1-1224 [pilon] NODE_12736_length_243_cov_25.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12736_length_243_cov_25.737705:1-243 [pilon] Processing NODE_243_length_2365_cov_17.463458:1-2365 [pilon] NODE_5178_length_603_cov_16.917012:1-603 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 174, Coverage: 23, minDepth: 6 [pilon] Confirmed 430 of 603 bases (71.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5178_length_603_cov_16.917012:1-603 [pilon] Processing NODE_4811_length_633_cov_49.259766:1-633 [pilon] NODE_6574_length_498_cov_28.466844:1-498 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 235, Coverage: 38, minDepth: 10 [pilon] Confirmed 394 of 498 bases (79.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6574_length_498_cov_28.466844:1-498 [pilon] Processing NODE_8943_length_369_cov_14.657258:1-369 [pilon] NODE_3351_length_805_cov_22.559942:1-805 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 421, Coverage: 36, minDepth: 9 [pilon] Confirmed 531 of 805 bases (65.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3351_length_805_cov_22.559942:1-805 [pilon] Processing NODE_5456_length_580_cov_23.751634:1-580 [pilon] NODE_4712_length_642_cov_23.103647:1-642 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 254, Coverage: 32, minDepth: 8 [pilon] Confirmed 506 of 642 bases (78.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4712_length_642_cov_23.103647:1-642 [pilon] Processing NODE_839_length_1606_cov_1.657239:1-1606 [pilon] NODE_9199_length_357_cov_23.529661:1-357 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 132, Coverage: 13, minDepth: 5 [pilon] Confirmed 277 of 357 bases (77.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9199_length_357_cov_23.529661:1-357 [pilon] Processing NODE_3741_length_749_cov_25.288217:1-749 [pilon] NODE_14724_length_243_cov_8.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14724_length_243_cov_8.393443:1-243 [pilon] Processing NODE_8865_length_374_cov_7.335968:1-374 [pilon] NODE_6143_length_528_cov_40.213759:1-528 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 372, Coverage: 40, minDepth: 10 [pilon] Confirmed 400 of 528 bases (75.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6143_length_528_cov_40.213759:1-528 [pilon] Processing NODE_9644_length_339_cov_28.871560:1-339 [pilon] NODE_5226_length_599_cov_3.983264:1-599 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 52, Coverage: 9, minDepth: 5 [pilon] Confirmed 433 of 599 bases (72.29%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5226_length_599_cov_3.983264:1-599 [pilon] Processing NODE_11688_length_257_cov_6.154412:1-257 [pilon] NODE_937_length_1537_cov_12.387006:1-1537 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 483, Coverage: 26, minDepth: 7 [pilon] Confirmed 1254 of 1537 bases (81.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_937_length_1537_cov_12.387006:1-1537 [pilon] Processing NODE_2529_length_961_cov_2.866667:1-961 [pilon] NODE_13161_length_243_cov_21.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13161_length_243_cov_21.442623:1-243 [pilon] Processing NODE_4858_length_630_cov_4.815324:1-630 [pilon] NODE_389_length_2062_cov_1.777950:1-2062 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 105, Coverage: 7, minDepth: 5 [pilon] Confirmed 1437 of 2062 bases (69.69%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_389_length_2062_cov_1.777950:1-2062 [pilon] Processing NODE_9869_length_331_cov_6.709524:1-331 [pilon] NODE_4178_length_696_cov_16.713043:1-696 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 212, Coverage: 25, minDepth: 6 [pilon] Confirmed 565 of 696 bases (81.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4178_length_696_cov_16.713043:1-696 [pilon] Processing NODE_13236_length_243_cov_20.762295:1-243 [pilon] NODE_1577_length_1228_cov_8.923216:1-1228 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 277, Coverage: 20, minDepth: 5 [pilon] Confirmed 991 of 1228 bases (80.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1577_length_1228_cov_8.923216:1-1228 [pilon] Processing NODE_3875_length_731_cov_6.916393:1-731 [pilon] NODE_11519_length_263_cov_16.105634:1-263 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 51, Coverage: 8, minDepth: 5 [pilon] Confirmed 209 of 263 bases (79.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_2601_length_945_cov_12.825243:1-945 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 253, Coverage: 29, minDepth: 7 [pilon] Confirmed 797 of 945 bases (84.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2601_length_945_cov_12.825243:1-945 [pilon] Finished processing NODE_11519_length_263_cov_16.105634:1-263 [pilon] Processing NODE_411_length_2032_cov_12.623757:1-2032 [pilon] Processing NODE_13658_length_243_cov_16.918033:1-243 [pilon] NODE_9664_length_339_cov_16.605505:1-339 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 81, Coverage: 10, minDepth: 5 [pilon] Confirmed 238 of 339 bases (70.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9664_length_339_cov_16.605505:1-339 [pilon] Processing NODE_9820_length_333_cov_21.448113:1-333 [pilon] NODE_12932_length_243_cov_23.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12932_length_243_cov_23.614754:1-243 [pilon] Processing NODE_6824_length_482_cov_0.490305:1-482 [pilon] NODE_14325_length_243_cov_11.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14325_length_243_cov_11.672131:1-243 [pilon] Processing NODE_5415_length_583_cov_1.705628:1-583 [pilon] NODE_5766_length_558_cov_15.302059:1-558 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 181, Coverage: 9, minDepth: 5 [pilon] Confirmed 313 of 558 bases (56.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5766_length_558_cov_15.302059:1-558 [pilon] Processing NODE_4089_length_706_cov_13.194872:1-706 [pilon] NODE_15266_length_122_cov_1976.000000:1-122 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 153, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 122 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15266_length_122_cov_1976.000000:1-122 [pilon] Processing NODE_15102_length_220_cov_57.494949:1-220 [pilon] NODE_187_length_2555_cov_2.036976:1-2555 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 164, Coverage: 8, minDepth: 5 [pilon] Confirmed 1948 of 2555 bases (76.24%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_187_length_2555_cov_2.036976:1-2555 [pilon] Processing NODE_4922_length_624_cov_24.343936:1-624 [pilon] NODE_1135_length_1423_cov_35.870200:1-1423 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 1105, Coverage: 51, minDepth: 13 [pilon] Confirmed 1172 of 1423 bases (82.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1135_length_1423_cov_35.870200:1-1423 [pilon] Processing NODE_1703_length_1179_cov_2.734405:1-1179 [pilon] NODE_42_length_3864_cov_21.510019:1-3864 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 2229, Coverage: 63, minDepth: 16 [pilon] Confirmed 3608 of 3864 bases (93.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_42_length_3864_cov_21.510019:1-3864 [pilon] Processing NODE_14730_length_243_cov_8.336066:1-243 [pilon] NODE_11688_length_257_cov_6.154412:1-257 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 257 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11688_length_257_cov_6.154412:1-257 [pilon] Processing NODE_3517_length_781_cov_3.706061:1-781 [pilon] NODE_8399_length_399_cov_33.111511:1-399 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 157, Coverage: 21, minDepth: 5 [pilon] Confirmed 258 of 399 bases (64.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8399_length_399_cov_33.111511:1-399 [pilon] Processing NODE_7432_length_447_cov_0.858896:1-447 [pilon] NODE_10295_length_313_cov_29.520833:1-313 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 107, Coverage: 3, minDepth: 5 [pilon] Confirmed 86 of 313 bases (27.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10295_length_313_cov_29.520833:1-313 [pilon] Processing NODE_4532_length_659_cov_1.314126:1-659 [pilon] NODE_7547_length_441_cov_15.415625:1-441 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 95, Coverage: 15, minDepth: 5 [pilon] Confirmed 301 of 441 bases (68.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7547_length_441_cov_15.415625:1-441 [pilon] Processing NODE_12928_length_243_cov_23.704918:1-243 [pilon] NODE_1588_length_1224_cov_2.134180:1-1224 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 82, Coverage: 9, minDepth: 5 [pilon] Confirmed 816 of 1224 bases (66.67%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1588_length_1224_cov_2.134180:1-1224 [pilon] Processing NODE_13150_length_243_cov_21.508197:1-243 [pilon] NODE_2215_length_1029_cov_22.694934:1-1029 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 499, Coverage: 34, minDepth: 9 [pilon] Confirmed 803 of 1029 bases (78.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2215_length_1029_cov_22.694934:1-1029 [pilon] Processing NODE_6083_length_533_cov_23.817961:1-533 [pilon] NODE_2814_length_907_cov_2.586514:1-907 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 57, Coverage: 8, minDepth: 5 [pilon] Confirmed 561 of 907 bases (61.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2814_length_907_cov_2.586514:1-907 [pilon] Processing NODE_13871_length_243_cov_15.114754:1-243 [pilon] NODE_8865_length_374_cov_7.335968:1-374 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 51, Coverage: 2, minDepth: 5 [pilon] Confirmed 69 of 374 bases (18.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8865_length_374_cov_7.335968:1-374 [pilon] Processing NODE_5014_length_617_cov_30.342742:1-617 [pilon] NODE_4811_length_633_cov_49.259766:1-633 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 547, Coverage: 81, minDepth: 20 [pilon] Confirmed 539 of 633 bases (85.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4811_length_633_cov_49.259766:1-633 [pilon] Processing NODE_7494_length_443_cov_41.403727:1-443 [pilon] NODE_8943_length_369_cov_14.657258:1-369 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 86, Coverage: 11, minDepth: 5 [pilon] Confirmed 222 of 369 bases (60.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8943_length_369_cov_14.657258:1-369 [pilon] Processing NODE_1347_length_1322_cov_22.618651:1-1322 [pilon] NODE_4858_length_630_cov_4.815324:1-630 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 57, Coverage: 11, minDepth: 5 [pilon] Confirmed 422 of 630 bases (66.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4858_length_630_cov_4.815324:1-630 [pilon] Processing NODE_8954_length_369_cov_7.233871:1-369 [pilon] NODE_839_length_1606_cov_1.657239:1-1606 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 84, Coverage: 7, minDepth: 5 [pilon] Confirmed 1196 of 1606 bases (74.47%) [pilon] Corrected 7 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_839_length_1606_cov_1.657239:1-1606 [pilon] Processing NODE_14905_length_243_cov_6.647541:1-243 [pilon] NODE_9644_length_339_cov_28.871560:1-339 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 128, Coverage: 16, minDepth: 5 [pilon] Confirmed 270 of 339 bases (79.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9644_length_339_cov_28.871560:1-339 [pilon] Processing NODE_8965_length_368_cov_24.461538:1-368 [pilon] NODE_2529_length_961_cov_2.866667:1-961 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 71, Coverage: 10, minDepth: 5 [pilon] Confirmed 831 of 961 bases (86.47%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2529_length_961_cov_2.866667:1-961 [pilon] Processing NODE_9698_length_338_cov_31.299539:1-338 [pilon] NODE_5456_length_580_cov_23.751634:1-580 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 247, Coverage: 31, minDepth: 8 [pilon] Confirmed 367 of 580 bases (63.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5456_length_580_cov_23.751634:1-580 [pilon] Processing NODE_1682_length_1189_cov_14.704120:1-1189 [pilon] NODE_411_length_2032_cov_12.623757:1-2032 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 534, Coverage: 34, minDepth: 9 [pilon] Confirmed 1577 of 2032 bases (77.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_411_length_2032_cov_12.623757:1-2032 [pilon] Processing NODE_13240_length_243_cov_20.729508:1-243 [pilon] NODE_3741_length_749_cov_25.288217:1-749 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 357, Coverage: 49, minDepth: 12 [pilon] Confirmed 625 of 749 bases (83.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3741_length_749_cov_25.288217:1-749 [pilon] Processing NODE_4696_length_644_cov_1.137667:1-644 [pilon] NODE_243_length_2365_cov_17.463458:1-2365 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 920, Coverage: 49, minDepth: 12 [pilon] Confirmed 2078 of 2365 bases (87.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_243_length_2365_cov_17.463458:1-2365 [pilon] Processing NODE_3423_length_795_cov_16.563798:1-795 [pilon] NODE_9869_length_331_cov_6.709524:1-331 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 20, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 331 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9869_length_331_cov_6.709524:1-331 [pilon] Processing NODE_329_length_2168_cov_12.519297:1-2168 [pilon] NODE_9820_length_333_cov_21.448113:1-333 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 110, Coverage: 7, minDepth: 5 [pilon] Confirmed 150 of 333 bases (45.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9820_length_333_cov_21.448113:1-333 [pilon] Processing NODE_199_length_2503_cov_21.462217:1-2503 [pilon] NODE_13236_length_243_cov_20.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13236_length_243_cov_20.762295:1-243 [pilon] Processing NODE_14769_length_243_cov_7.967213:1-243 [pilon] NODE_3875_length_731_cov_6.916393:1-731 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 119, Coverage: 9, minDepth: 5 [pilon] Confirmed 507 of 731 bases (69.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3875_length_731_cov_6.916393:1-731 [pilon] Processing NODE_6387_length_511_cov_13.966667:1-511 [pilon] NODE_13658_length_243_cov_16.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13658_length_243_cov_16.918033:1-243 [pilon] Processing NODE_12049_length_246_cov_5.160000:1-246 [pilon] NODE_6824_length_482_cov_0.490305:1-482 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 47 of 482 bases (9.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6824_length_482_cov_0.490305:1-482 [pilon] Processing NODE_12775_length_243_cov_25.303279:1-243 [pilon] NODE_5415_length_583_cov_1.705628:1-583 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 217 of 583 bases (37.22%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5415_length_583_cov_1.705628:1-583 [pilon] Processing NODE_11300_length_272_cov_22.317881:1-272 [pilon] NODE_4089_length_706_cov_13.194872:1-706 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 207, Coverage: 24, minDepth: 6 [pilon] Confirmed 555 of 706 bases (78.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4089_length_706_cov_13.194872:1-706 [pilon] Processing NODE_13478_length_243_cov_18.606557:1-243 [pilon] NODE_15102_length_220_cov_57.494949:1-220 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 149, Coverage: 7, minDepth: 5 [pilon] Confirmed 152 of 220 bases (69.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15102_length_220_cov_57.494949:1-220 [pilon] Processing NODE_76_length_3249_cov_1.394182:1-3249 [pilon] NODE_13871_length_243_cov_15.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13871_length_243_cov_15.114754:1-243 [pilon] Processing NODE_5804_length_555_cov_2.269585:1-555 [pilon] NODE_3517_length_781_cov_3.706061:1-781 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 84, Coverage: 6, minDepth: 5 [pilon] Confirmed 534 of 781 bases (68.37%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3517_length_781_cov_3.706061:1-781 [pilon] Processing NODE_6403_length_510_cov_13.192802:1-510 [pilon] NODE_14730_length_243_cov_8.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14730_length_243_cov_8.336066:1-243 [pilon] Processing NODE_1529_length_1249_cov_2.105496:1-1249 [pilon] NODE_1703_length_1179_cov_2.734405:1-1179 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 743 of 1179 bases (63.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1703_length_1179_cov_2.734405:1-1179 [pilon] Processing NODE_12379_length_243_cov_31.442623:1-243 [pilon] NODE_4922_length_624_cov_24.343936:1-624 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 291, Coverage: 37, minDepth: 9 [pilon] Confirmed 559 of 624 bases (89.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4922_length_624_cov_24.343936:1-624 [pilon] Processing NODE_13039_length_243_cov_22.540984:1-243 [pilon] NODE_7432_length_447_cov_0.858896:1-447 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 5, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 447 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7432_length_447_cov_0.858896:1-447 [pilon] Processing NODE_1842_length_1132_cov_20.574679:1-1132 [pilon] NODE_4532_length_659_cov_1.314126:1-659 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 265 of 659 bases (40.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4532_length_659_cov_1.314126:1-659 [pilon] Processing NODE_14969_length_243_cov_5.827869:1-243 [pilon] NODE_12928_length_243_cov_23.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12928_length_243_cov_23.704918:1-243 [pilon] Processing NODE_6011_length_540_cov_6.687351:1-540 [pilon] NODE_6083_length_533_cov_23.817961:1-533 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 227, Coverage: 32, minDepth: 8 [pilon] Confirmed 386 of 533 bases (72.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6083_length_533_cov_23.817961:1-533 [pilon] Processing NODE_4398_length_671_cov_22.356364:1-671 [pilon] NODE_8954_length_369_cov_7.233871:1-369 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 26, Coverage: 2, minDepth: 5 [pilon] Confirmed 119 of 369 bases (32.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8954_length_369_cov_7.233871:1-369 [pilon] Processing NODE_11607_length_260_cov_5.172662:1-260 [pilon] NODE_13150_length_243_cov_21.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13150_length_243_cov_21.508197:1-243 [pilon] Processing NODE_5945_length_545_cov_1.417453:1-545 [pilon] NODE_5014_length_617_cov_30.342742:1-617 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 357, Coverage: 31, minDepth: 8 [pilon] Confirmed 478 of 617 bases (77.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5014_length_617_cov_30.342742:1-617 [pilon] Processing NODE_14167_length_243_cov_12.934426:1-243 [pilon] NODE_8965_length_368_cov_24.461538:1-368 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 151, Coverage: 22, minDepth: 6 [pilon] Confirmed 311 of 368 bases (84.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8965_length_368_cov_24.461538:1-368 [pilon] Processing NODE_9120_length_360_cov_25.485356:1-360 [pilon] NODE_9698_length_338_cov_31.299539:1-338 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 143, Coverage: 5, minDepth: 5 [pilon] Confirmed 132 of 338 bases (39.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9698_length_338_cov_31.299539:1-338 [pilon] Processing NODE_10606_length_300_cov_27.703911:1-300 [pilon] NODE_14905_length_243_cov_6.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14905_length_243_cov_6.647541:1-243 [pilon] Processing NODE_13638_length_243_cov_17.147541:1-243 [pilon] NODE_7494_length_443_cov_41.403727:1-443 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 353, Coverage: 62, minDepth: 16 [pilon] Confirmed 376 of 443 bases (84.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7494_length_443_cov_41.403727:1-443 [pilon] Processing NODE_2008_length_1085_cov_15.208506:1-1085 [pilon] NODE_199_length_2503_cov_21.462217:1-2503 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 1214, Coverage: 47, minDepth: 12 [pilon] Confirmed 2367 of 2503 bases (94.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_199_length_2503_cov_21.462217:1-2503 [pilon] Processing NODE_11941_length_248_cov_12.039370:1-248 [pilon] NODE_1347_length_1322_cov_22.618651:1-1322 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 613, Coverage: 40, minDepth: 10 [pilon] Confirmed 1117 of 1322 bases (84.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1347_length_1322_cov_22.618651:1-1322 [pilon] Processing NODE_12783_length_243_cov_25.221311:1-243 [pilon] NODE_13240_length_243_cov_20.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13240_length_243_cov_20.729508:1-243 [pilon] Processing NODE_337_length_2142_cov_15.164275:1-2142 [pilon] NODE_4696_length_644_cov_1.137667:1-644 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 239 of 644 bases (37.11%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4696_length_644_cov_1.137667:1-644 [pilon] Processing NODE_12123_length_243_cov_43.163934:1-243 [pilon] NODE_1682_length_1189_cov_14.704120:1-1189 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 451, Coverage: 37, minDepth: 9 [pilon] Confirmed 1122 of 1189 bases (94.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1682_length_1189_cov_14.704120:1-1189 [pilon] Processing NODE_14508_length_243_cov_10.270492:1-243 [pilon] NODE_3423_length_795_cov_16.563798:1-795 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 305, Coverage: 39, minDepth: 10 [pilon] Confirmed 651 of 795 bases (81.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3423_length_795_cov_16.563798:1-795 [pilon] Processing NODE_3368_length_802_cov_27.427313:1-802 [pilon] NODE_329_length_2168_cov_12.519297:1-2168 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 716, Coverage: 36, minDepth: 9 [pilon] Confirmed 1886 of 2168 bases (86.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_329_length_2168_cov_12.519297:1-2168 [pilon] Processing NODE_10105_length_321_cov_17.785000:1-321 [pilon] NODE_14769_length_243_cov_7.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14769_length_243_cov_7.967213:1-243 [pilon] Processing NODE_11199_length_276_cov_13.109677:1-276 [pilon] NODE_5804_length_555_cov_2.269585:1-555 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 249 of 555 bases (44.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5804_length_555_cov_2.269585:1-555 [pilon] Processing NODE_5519_length_576_cov_7.136264:1-576 [pilon] NODE_6387_length_511_cov_13.966667:1-511 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 181, Coverage: 22, minDepth: 6 [pilon] Confirmed 422 of 511 bases (82.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6387_length_511_cov_13.966667:1-511 [pilon] Processing NODE_13560_length_243_cov_17.786885:1-243 [pilon] NODE_12049_length_246_cov_5.160000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 15, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12049_length_246_cov_5.160000:1-246 [pilon] Processing NODE_2961_length_881_cov_0.780263:1-881 [pilon] NODE_11300_length_272_cov_22.317881:1-272 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 74, Coverage: 3, minDepth: 5 [pilon] Confirmed 69 of 272 bases (25.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11300_length_272_cov_22.317881:1-272 [pilon] Processing NODE_11784_length_253_cov_31.818182:1-253 [pilon] NODE_12775_length_243_cov_25.303279:1-243 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 52, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12775_length_243_cov_25.303279:1-243 [pilon] Processing NODE_12036_length_246_cov_9.176000:1-246 [pilon] NODE_13478_length_243_cov_18.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13478_length_243_cov_18.606557:1-243 [pilon] Processing NODE_14352_length_243_cov_11.450820:1-243 [pilon] NODE_76_length_3249_cov_1.394182:1-3249 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 149, Coverage: 6, minDepth: 5 [pilon] Confirmed 1775 of 3249 bases (54.63%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_76_length_3249_cov_1.394182:1-3249 [pilon] Processing NODE_8279_length_405_cov_19.475352:1-405 [pilon] NODE_6403_length_510_cov_13.192802:1-510 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 124, Coverage: 14, minDepth: 5 [pilon] Confirmed 312 of 510 bases (61.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6403_length_510_cov_13.192802:1-510 [pilon] Processing NODE_10727_length_297_cov_9.948864:1-297 [pilon] NODE_12379_length_243_cov_31.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_13039_length_243_cov_22.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12379_length_243_cov_31.442623:1-243 [pilon] Finished processing NODE_13039_length_243_cov_22.540984:1-243 [pilon] Processing NODE_10122_length_321_cov_10.010000:1-321 [pilon] NODE_1529_length_1249_cov_2.105496:1-1249 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 73, Coverage: 7, minDepth: 5 [pilon] Confirmed 992 of 1249 bases (79.42%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1529_length_1249_cov_2.105496:1-1249 [pilon] Processing NODE_9896_length_330_cov_18.961722:1-330 [pilon] Processing NODE_8241_length_407_cov_1.332168:1-407 [pilon] NODE_11941_length_248_cov_12.039370:1-248 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 19, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 248 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11941_length_248_cov_12.039370:1-248 [pilon] Processing NODE_505_length_1909_cov_4.178971:1-1909 [pilon] NODE_1842_length_1132_cov_20.574679:1-1132 log: [pilon] NODE_6011_length_540_cov_6.687351:1-540 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 79, Coverage: 18, minDepth: 5 [pilon] Confirmed 539 of 540 bases (99.81%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 493, Coverage: 35, minDepth: 9 [pilon] Confirmed 807 of 1132 bases (71.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6011_length_540_cov_6.687351:1-540 [pilon] Finished processing NODE_1842_length_1132_cov_20.574679:1-1132 [pilon] Processing NODE_14241_length_243_cov_12.295082:1-243 [pilon] Processing NODE_8093_length_414_cov_2.122867:1-414 [pilon] NODE_14969_length_243_cov_5.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14969_length_243_cov_5.827869:1-243 [pilon] Processing NODE_2492_length_969_cov_2.949292:1-969 [pilon] NODE_14167_length_243_cov_12.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14167_length_243_cov_12.934426:1-243 [pilon] Processing NODE_245_length_2357_cov_23.882826:1-2357 [pilon] NODE_4398_length_671_cov_22.356364:1-671 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 289, Coverage: 45, minDepth: 11 [pilon] Confirmed 485 of 671 bases (72.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4398_length_671_cov_22.356364:1-671 [pilon] Processing NODE_9159_length_359_cov_29.037815:1-359 [pilon] NODE_5945_length_545_cov_1.417453:1-545 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 146 of 545 bases (26.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5945_length_545_cov_1.417453:1-545 [pilon] Processing NODE_9407_length_350_cov_16.021834:1-350 [pilon] NODE_11607_length_260_cov_5.172662:1-260 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 260 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11607_length_260_cov_5.172662:1-260 [pilon] Processing NODE_12179_length_243_cov_37.557377:1-243 [pilon] NODE_13638_length_243_cov_17.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13638_length_243_cov_17.147541:1-243 [pilon] Processing NODE_12962_length_243_cov_23.327869:1-243 [pilon] NODE_5519_length_576_cov_7.136264:1-576 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 70, Coverage: 9, minDepth: 5 [pilon] Confirmed 272 of 576 bases (47.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5519_length_576_cov_7.136264:1-576 [pilon] Processing NODE_12666_length_243_cov_26.614754:1-243 [pilon] NODE_10606_length_300_cov_27.703911:1-300 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 103, Coverage: 5, minDepth: 5 [pilon] Confirmed 138 of 300 bases (46.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10606_length_300_cov_27.703911:1-300 [pilon] Processing NODE_1356_length_1316_cov_10.654393:1-1316 [pilon] NODE_12123_length_243_cov_43.163934:1-243 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 117, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12123_length_243_cov_43.163934:1-243 [pilon] Processing NODE_9368_length_351_cov_21.026087:1-351 [pilon] NODE_2008_length_1085_cov_15.208506:1-1085 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 347, Coverage: 34, minDepth: 9 [pilon] Confirmed 943 of 1085 bases (86.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2008_length_1085_cov_15.208506:1-1085 [pilon] Processing NODE_8421_length_398_cov_29.635379:1-398 [pilon] NODE_9120_length_360_cov_25.485356:1-360 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 130, Coverage: 22, minDepth: 6 [pilon] Confirmed 331 of 360 bases (91.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9120_length_360_cov_25.485356:1-360 [pilon] Processing NODE_727_length_1686_cov_2.109904:1-1686 [pilon] NODE_12783_length_243_cov_25.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12783_length_243_cov_25.221311:1-243 [pilon] Processing NODE_617_length_1787_cov_22.389556:1-1787 [pilon] NODE_14508_length_243_cov_10.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14508_length_243_cov_10.270492:1-243 [pilon] Processing NODE_12823_length_243_cov_24.811475:1-243 [pilon] NODE_3368_length_802_cov_27.427313:1-802 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 424, Coverage: 45, minDepth: 11 [pilon] Confirmed 662 of 802 bases (82.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3368_length_802_cov_27.427313:1-802 [pilon] Processing NODE_7862_length_424_cov_22.221122:1-424 [pilon] NODE_337_length_2142_cov_15.164275:1-2142 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 771, Coverage: 45, minDepth: 11 [pilon] Confirmed 1876 of 2142 bases (87.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_337_length_2142_cov_15.164275:1-2142 [pilon] Processing NODE_8198_length_408_cov_22.979094:1-408 [pilon] NODE_11199_length_276_cov_13.109677:1-276 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 40, Coverage: 2, minDepth: 5 [pilon] Confirmed 30 of 276 bases (10.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11199_length_276_cov_13.109677:1-276 [pilon] Processing NODE_4723_length_641_cov_21.880769:1-641 [pilon] NODE_10105_length_321_cov_17.785000:1-321 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 83, Coverage: 8, minDepth: 5 [pilon] Confirmed 237 of 321 bases (73.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10105_length_321_cov_17.785000:1-321 [pilon] Processing NODE_3036_length_867_cov_3.329759:1-867 [pilon] NODE_11784_length_253_cov_31.818182:1-253 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 96, Coverage: 3, minDepth: 5 [pilon] Confirmed 68 of 253 bases (26.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11784_length_253_cov_31.818182:1-253 [pilon] Processing NODE_294_length_2250_cov_19.184124:1-2250 [pilon] NODE_12036_length_246_cov_9.176000:1-246 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12036_length_246_cov_9.176000:1-246 [pilon] Processing NODE_14089_length_243_cov_13.532787:1-243 [pilon] NODE_13560_length_243_cov_17.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13560_length_243_cov_17.786885:1-243 [pilon] Processing NODE_1222_length_1379_cov_1.750397:1-1379 [pilon] NODE_2961_length_881_cov_0.780263:1-881 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 16, Coverage: 2, minDepth: 5 [pilon] Confirmed 129 of 881 bases (14.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2961_length_881_cov_0.780263:1-881 [pilon] Processing NODE_2036_length_1076_cov_37.917277:1-1076 [pilon] NODE_14352_length_243_cov_11.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14352_length_243_cov_11.450820:1-243 [pilon] Processing NODE_6260_length_520_cov_25.982456:1-520 [pilon] NODE_10727_length_297_cov_9.948864:1-297 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 177 of 297 bases (59.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10727_length_297_cov_9.948864:1-297 [pilon] Processing NODE_2703_length_929_cov_1.650990:1-929 [pilon] NODE_505_length_1909_cov_4.178971:1-1909 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 207, Coverage: 13, minDepth: 5 [pilon] Confirmed 1684 of 1909 bases (88.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_505_length_1909_cov_4.178971:1-1909 [pilon] Processing NODE_15173_length_175_cov_10.722222:1-175 [pilon] NODE_8241_length_407_cov_1.332168:1-407 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 77 of 407 bases (18.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8241_length_407_cov_1.332168:1-407 [pilon] Processing NODE_1203_length_1394_cov_33.979576:1-1394 [pilon] NODE_10122_length_321_cov_10.010000:1-321 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 321 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10122_length_321_cov_10.010000:1-321 [pilon] Processing NODE_8532_length_392_cov_30.837638:1-392 [pilon] NODE_14241_length_243_cov_12.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14241_length_243_cov_12.295082:1-243 [pilon] Processing NODE_14226_length_243_cov_12.368852:1-243 [pilon] NODE_8279_length_405_cov_19.475352:1-405 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 138, Coverage: 17, minDepth: 5 [pilon] Confirmed 279 of 405 bases (68.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8279_length_405_cov_19.475352:1-405 [pilon] Processing NODE_4498_length_662_cov_5.299445:1-662 [pilon] NODE_8093_length_414_cov_2.122867:1-414 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 227 of 414 bases (54.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8093_length_414_cov_2.122867:1-414 [pilon] Processing NODE_11356_length_270_cov_9.033557:1-270 [pilon] NODE_12666_length_243_cov_26.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12666_length_243_cov_26.614754:1-243 [pilon] Processing NODE_3778_length_743_cov_40.993569:1-743 [pilon] NODE_9896_length_330_cov_18.961722:1-330 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 89, Coverage: 13, minDepth: 5 [pilon] Confirmed 291 of 330 bases (88.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9896_length_330_cov_18.961722:1-330 [pilon] Processing NODE_1132_length_1425_cov_2.143405:1-1425 [pilon] NODE_2492_length_969_cov_2.949292:1-969 log: [pilon] NODE_9159_length_359_cov_29.037815:1-359 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 144, Coverage: 15, minDepth: 5 [pilon] Confirmed 306 of 359 bases (85.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9159_length_359_cov_29.037815:1-359 [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 66, Coverage: 8, minDepth: 5 [pilon] Confirmed 809 of 969 bases (83.49%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2492_length_969_cov_2.949292:1-969 [pilon] Processing NODE_15108_length_217_cov_4.479167:1-217 [pilon] Processing NODE_599_length_1811_cov_27.150296:1-1811 [pilon] NODE_12179_length_243_cov_37.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12179_length_243_cov_37.557377:1-243 [pilon] Processing NODE_9356_length_351_cov_31.104348:1-351 [pilon] NODE_9407_length_350_cov_16.021834:1-350 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 76, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 350 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9407_length_350_cov_16.021834:1-350 [pilon] Processing NODE_2884_length_895_cov_33.789406:1-895 [pilon] NODE_245_length_2357_cov_23.882826:1-2357 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 1239, Coverage: 62, minDepth: 16 [pilon] Confirmed 2141 of 2357 bases (90.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_245_length_2357_cov_23.882826:1-2357 [pilon] Processing NODE_7980_length_419_cov_12.825503:1-419 [pilon] NODE_12962_length_243_cov_23.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12962_length_243_cov_23.327869:1-243 [pilon] Processing NODE_10529_length_303_cov_24.774725:1-303 [pilon] NODE_1356_length_1316_cov_10.654393:1-1316 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 383, Coverage: 32, minDepth: 8 [pilon] Confirmed 1141 of 1316 bases (86.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1356_length_1316_cov_10.654393:1-1316 [pilon] Processing NODE_2524_length_962_cov_24.753864:1-962 [pilon] NODE_8421_length_398_cov_29.635379:1-398 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 155, Coverage: 23, minDepth: 6 [pilon] Confirmed 263 of 398 bases (66.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8421_length_398_cov_29.635379:1-398 [pilon] Processing NODE_9081_length_363_cov_10.706612:1-363 [pilon] NODE_9368_length_351_cov_21.026087:1-351 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 103, Coverage: 13, minDepth: 5 [pilon] Confirmed 261 of 351 bases (74.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9368_length_351_cov_21.026087:1-351 [pilon] Processing NODE_6465_length_506_cov_4.228571:1-506 [pilon] NODE_12823_length_243_cov_24.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12823_length_243_cov_24.811475:1-243 [pilon] Processing NODE_8355_length_402_cov_21.982206:1-402 [pilon] NODE_727_length_1686_cov_2.109904:1-1686 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 107, Coverage: 8, minDepth: 5 [pilon] Confirmed 1291 of 1686 bases (76.57%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_727_length_1686_cov_2.109904:1-1686 [pilon] Processing NODE_12598_length_243_cov_27.614754:1-243 [pilon] NODE_14089_length_243_cov_13.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14089_length_243_cov_13.532787:1-243 [pilon] Processing NODE_2957_length_881_cov_3.686842:1-881 [pilon] NODE_7862_length_424_cov_22.221122:1-424 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 163, Coverage: 23, minDepth: 6 [pilon] Confirmed 325 of 424 bases (76.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7862_length_424_cov_22.221122:1-424 [pilon] Processing NODE_1209_length_1389_cov_21.611199:1-1389 [pilon] NODE_8198_length_408_cov_22.979094:1-408 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 168, Coverage: 18, minDepth: 5 [pilon] Confirmed 329 of 408 bases (80.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8198_length_408_cov_22.979094:1-408 [pilon] Processing NODE_14151_length_243_cov_13.098361:1-243 [pilon] NODE_4723_length_641_cov_21.880769:1-641 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 254, Coverage: 23, minDepth: 6 [pilon] Confirmed 603 of 641 bases (94.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4723_length_641_cov_21.880769:1-641 [pilon] Processing NODE_1863_length_1125_cov_18.010956:1-1125 [pilon] NODE_617_length_1787_cov_22.389556:1-1787 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 856, Coverage: 50, minDepth: 13 [pilon] Confirmed 1668 of 1787 bases (93.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_617_length_1787_cov_22.389556:1-1787 [pilon] Processing NODE_12258_length_243_cov_34.303279:1-243 [pilon] NODE_3036_length_867_cov_3.329759:1-867 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 65, Coverage: 9, minDepth: 5 [pilon] Confirmed 757 of 867 bases (87.31%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3036_length_867_cov_3.329759:1-867 [pilon] Processing NODE_6462_length_506_cov_11.496104:1-506 [pilon] NODE_15173_length_175_cov_10.722222:1-175 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 175 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15173_length_175_cov_10.722222:1-175 [pilon] Processing NODE_1038_length_1474_cov_30.397635:1-1474 [pilon] NODE_15108_length_217_cov_4.479167:1-217 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 217 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15108_length_217_cov_4.479167:1-217 [pilon] Processing NODE_2339_length_1003_cov_1.894558:1-1003 [pilon] NODE_3778_length_743_cov_40.993569:1-743 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 572, Coverage: 77, minDepth: 19 [pilon] Confirmed 621 of 743 bases (83.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3778_length_743_cov_40.993569:1-743 [pilon] Processing NODE_860_length_1588_cov_12.516701:1-1588 [pilon] NODE_6260_length_520_cov_25.982456:1-520 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 224, Coverage: 38, minDepth: 10 [pilon] Confirmed 387 of 520 bases (74.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6260_length_520_cov_25.982456:1-520 [pilon] Processing NODE_9811_length_333_cov_26.773585:1-333 [pilon] NODE_11356_length_270_cov_9.033557:1-270 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 26, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 270 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11356_length_270_cov_9.033557:1-270 [pilon] Processing NODE_12773_length_243_cov_25.311475:1-243 [pilon] NODE_14226_length_243_cov_12.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14226_length_243_cov_12.368852:1-243 [pilon] Processing NODE_7178_length_461_cov_2.047059:1-461 [pilon] NODE_1222_length_1379_cov_1.750397:1-1379 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 64, Coverage: 6, minDepth: 5 [pilon] Confirmed 693 of 1379 bases (50.25%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1222_length_1379_cov_1.750397:1-1379 [pilon] Processing NODE_4786_length_636_cov_13.679612:1-636 [pilon] NODE_8532_length_392_cov_30.837638:1-392 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 184, Coverage: 26, minDepth: 7 [pilon] Confirmed 286 of 392 bases (72.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_2036_length_1076_cov_37.917277:1-1076 log: [pilon] frags shovill.bam: coverage 87 [pilon] Total Reads: 820, Coverage: 87, minDepth: 22 [pilon] Confirmed 842 of 1076 bases (78.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2036_length_1076_cov_37.917277:1-1076 [pilon] Processing NODE_4569_length_656_cov_6.353271:1-656 [pilon] Finished processing NODE_8532_length_392_cov_30.837638:1-392 [pilon] Processing NODE_2924_length_888_cov_20.271186:1-888 [pilon] NODE_9356_length_351_cov_31.104348:1-351 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 188, Coverage: 30, minDepth: 8 [pilon] Confirmed 319 of 351 bases (90.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9356_length_351_cov_31.104348:1-351 [pilon] Processing NODE_9032_length_365_cov_11.036885:1-365 [pilon] NODE_2703_length_929_cov_1.650990:1-929 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 43, Coverage: 6, minDepth: 5 [pilon] Confirmed 320 of 929 bases (34.45%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2703_length_929_cov_1.650990:1-929 [pilon] Processing NODE_526_length_1891_cov_15.740678:1-1891 [pilon] NODE_4498_length_662_cov_5.299445:1-662 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 71, Coverage: 13, minDepth: 5 [pilon] Confirmed 561 of 662 bases (84.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4498_length_662_cov_5.299445:1-662 [pilon] Processing NODE_4927_length_624_cov_5.051690:1-624 [pilon] NODE_7980_length_419_cov_12.825503:1-419 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 89, Coverage: 11, minDepth: 5 [pilon] Confirmed 314 of 419 bases (74.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7980_length_419_cov_12.825503:1-419 [pilon] Processing NODE_2976_length_878_cov_46.221929:1-878 [pilon] NODE_1203_length_1394_cov_33.979576:1-1394 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 1062, Coverage: 63, minDepth: 16 [pilon] Confirmed 1177 of 1394 bases (84.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1203_length_1394_cov_33.979576:1-1394 [pilon] Processing NODE_7230_length_459_cov_0.473373:1-459 [pilon] NODE_294_length_2250_cov_19.184124:1-2250 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 964, Coverage: 50, minDepth: 13 [pilon] Confirmed 1598 of 2250 bases (71.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_294_length_2250_cov_19.184124:1-2250 [pilon] Processing NODE_7322_length_452_cov_16.691843:1-452 [pilon] NODE_2884_length_895_cov_33.789406:1-895 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 596, Coverage: 48, minDepth: 12 [pilon] Confirmed 811 of 895 bases (90.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2884_length_895_cov_33.789406:1-895 [pilon] Processing NODE_3182_length_835_cov_1.326331:1-835 [pilon] NODE_10529_length_303_cov_24.774725:1-303 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 103, Coverage: 6, minDepth: 5 [pilon] Confirmed 155 of 303 bases (51.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10529_length_303_cov_24.774725:1-303 [pilon] Processing NODE_9163_length_359_cov_15.264706:1-359 [pilon] NODE_1132_length_1425_cov_2.143405:1-1425 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 86, Coverage: 8, minDepth: 5 [pilon] Confirmed 1128 of 1425 bases (79.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1132_length_1425_cov_2.143405:1-1425 [pilon] Processing NODE_1569_length_1230_cov_37.708747:1-1230 [pilon] NODE_9081_length_363_cov_10.706612:1-363 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 47, Coverage: 2, minDepth: 5 [pilon] Confirmed 108 of 363 bases (29.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9081_length_363_cov_10.706612:1-363 [pilon] Processing NODE_12824_length_243_cov_24.811475:1-243 [pilon] NODE_599_length_1811_cov_27.150296:1-1811 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 1187, Coverage: 59, minDepth: 15 [pilon] Confirmed 1602 of 1811 bases (88.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_599_length_1811_cov_27.150296:1-1811 [pilon] Processing NODE_9241_length_356_cov_28.485106:1-356 [pilon] NODE_2524_length_962_cov_24.753864:1-962 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 474, Coverage: 43, minDepth: 11 [pilon] Confirmed 718 of 962 bases (74.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2524_length_962_cov_24.753864:1-962 [pilon] Processing NODE_10872_length_289_cov_12.732143:1-289 [pilon] NODE_12598_length_243_cov_27.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12598_length_243_cov_27.614754:1-243 [pilon] Processing NODE_5698_length_563_cov_49.477376:1-563 [pilon] NODE_6465_length_506_cov_4.228571:1-506 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 40, Coverage: 9, minDepth: 5 [pilon] Confirmed 412 of 506 bases (81.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6465_length_506_cov_4.228571:1-506 [pilon] Processing NODE_8397_length_399_cov_35.068345:1-399 [pilon] NODE_8355_length_402_cov_21.982206:1-402 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 145, Coverage: 4, minDepth: 5 [pilon] Confirmed 143 of 402 bases (35.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8355_length_402_cov_21.982206:1-402 [pilon] Processing NODE_2422_length_985_cov_28.987269:1-985 [pilon] NODE_1209_length_1389_cov_21.611199:1-1389 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 705, Coverage: 31, minDepth: 8 [pilon] Confirmed 1180 of 1389 bases (84.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1209_length_1389_cov_21.611199:1-1389 [pilon] Processing NODE_8933_length_369_cov_22.798387:1-369 [pilon] NODE_2957_length_881_cov_3.686842:1-881 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 67, Coverage: 9, minDepth: 5 [pilon] Confirmed 705 of 881 bases (80.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2957_length_881_cov_3.686842:1-881 [pilon] Processing NODE_10363_length_310_cov_22.677249:1-310 [pilon] NODE_14151_length_243_cov_13.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14151_length_243_cov_13.098361:1-243 [pilon] Processing NODE_13335_length_243_cov_19.934426:1-243 [pilon] NODE_12258_length_243_cov_34.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12258_length_243_cov_34.303279:1-243 [pilon] Processing NODE_2986_length_875_cov_26.757294:1-875 [pilon] NODE_2339_length_1003_cov_1.894558:1-1003 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 54, Coverage: 7, minDepth: 5 [pilon] Confirmed 626 of 1003 bases (62.41%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2339_length_1003_cov_1.894558:1-1003 [pilon] Processing NODE_15169_length_177_cov_43.535714:1-177 [pilon] NODE_1863_length_1125_cov_18.010956:1-1125 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 461, Coverage: 32, minDepth: 8 [pilon] Confirmed 1024 of 1125 bases (91.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1863_length_1125_cov_18.010956:1-1125 [pilon] Processing NODE_10403_length_309_cov_10.946809:1-309 [pilon] NODE_6462_length_506_cov_11.496104:1-506 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 119, Coverage: 15, minDepth: 5 [pilon] Confirmed 461 of 506 bases (91.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6462_length_506_cov_11.496104:1-506 [pilon] Processing NODE_14768_length_243_cov_7.967213:1-243 [pilon] NODE_860_length_1588_cov_12.516701:1-1588 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 404, Coverage: 21, minDepth: 5 [pilon] Confirmed 1210 of 1588 bases (76.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_860_length_1588_cov_12.516701:1-1588 [pilon] Processing NODE_12363_length_243_cov_31.786885:1-243 [pilon] NODE_12773_length_243_cov_25.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12773_length_243_cov_25.311475:1-243 [pilon] Processing NODE_12668_length_243_cov_26.581967:1-243 [pilon] NODE_1038_length_1474_cov_30.397635:1-1474 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 974, Coverage: 58, minDepth: 15 [pilon] Confirmed 1140 of 1474 bases (77.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1038_length_1474_cov_30.397635:1-1474 [pilon] Processing NODE_2988_length_874_cov_44.192563:1-874 [pilon] NODE_7178_length_461_cov_2.047059:1-461 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 204 of 461 bases (44.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7178_length_461_cov_2.047059:1-461 [pilon] Processing NODE_4471_length_664_cov_9.550645:1-664 [pilon] NODE_9811_length_333_cov_26.773585:1-333 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 98, Coverage: 12, minDepth: 5 [pilon] Confirmed 241 of 333 bases (72.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9811_length_333_cov_26.773585:1-333 [pilon] Processing NODE_7875_length_424_cov_0.815182:1-424 [pilon] NODE_9032_length_365_cov_11.036885:1-365 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 64, Coverage: 5, minDepth: 5 [pilon] Confirmed 208 of 365 bases (56.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9032_length_365_cov_11.036885:1-365 [pilon] Processing NODE_11446_length_265_cov_12.847222:1-265 [pilon] NODE_4786_length_636_cov_13.679612:1-636 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 161, Coverage: 33, minDepth: 8 [pilon] Confirmed 394 of 636 bases (61.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4786_length_636_cov_13.679612:1-636 [pilon] Processing NODE_10063_length_323_cov_10.534653:1-323 [pilon] NODE_2924_length_888_cov_20.271186:1-888 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 385, Coverage: 34, minDepth: 9 [pilon] Confirmed 726 of 888 bases (81.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2924_length_888_cov_20.271186:1-888 [pilon] Processing NODE_1950_length_1098_cov_3.711361:1-1098 [pilon] NODE_4569_length_656_cov_6.353271:1-656 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 83, Coverage: 4, minDepth: 5 [pilon] Confirmed 260 of 656 bases (39.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4569_length_656_cov_6.353271:1-656 [pilon] Processing NODE_4147_length_699_cov_2.664360:1-699 [pilon] NODE_10872_length_289_cov_12.732143:1-289 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 52, Coverage: 2, minDepth: 5 [pilon] Confirmed 43 of 289 bases (14.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10872_length_289_cov_12.732143:1-289 [pilon] Processing NODE_995_length_1496_cov_22.752000:1-1496 [pilon] NODE_4927_length_624_cov_5.051690:1-624 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 60, Coverage: 13, minDepth: 5 [pilon] Confirmed 479 of 624 bases (76.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4927_length_624_cov_5.051690:1-624 [pilon] Processing NODE_11929_length_249_cov_7.328125:1-249 [pilon] NODE_7230_length_459_cov_0.473373:1-459 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 109 of 459 bases (23.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7230_length_459_cov_0.473373:1-459 [pilon] Processing NODE_4760_length_639_cov_0.814672:1-639 [pilon] NODE_9241_length_356_cov_28.485106:1-356 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 140, Coverage: 4, minDepth: 5 [pilon] Confirmed 132 of 356 bases (37.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9241_length_356_cov_28.485106:1-356 [pilon] Processing NODE_5711_length_563_cov_0.934389:1-563 [pilon] NODE_9163_length_359_cov_15.264706:1-359 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 77, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 359 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9163_length_359_cov_15.264706:1-359 [pilon] Processing NODE_15189_length_163_cov_27.714286:1-163 [pilon] NODE_7322_length_452_cov_16.691843:1-452 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 119, Coverage: 4, minDepth: 5 [pilon] Confirmed 246 of 452 bases (54.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7322_length_452_cov_16.691843:1-452 [pilon] Processing NODE_11708_length_255_cov_30.492537:1-255 [pilon] NODE_2976_length_878_cov_46.221929:1-878 log: [pilon] frags shovill.bam: coverage 101 [pilon] Total Reads: 793, Coverage: 101, minDepth: 25 [pilon] Confirmed 640 of 878 bases (72.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2976_length_878_cov_46.221929:1-878 [pilon] Processing NODE_14509_length_243_cov_10.254098:1-243 [pilon] NODE_3182_length_835_cov_1.326331:1-835 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 38, Coverage: 5, minDepth: 5 [pilon] Confirmed 526 of 835 bases (62.99%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3182_length_835_cov_1.326331:1-835 [pilon] Processing NODE_2431_length_982_cov_19.409988:1-982 [pilon] NODE_12824_length_243_cov_24.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12824_length_243_cov_24.811475:1-243 [pilon] Processing NODE_11469_length_264_cov_20.874126:1-264 [pilon] NODE_526_length_1891_cov_15.740678:1-1891 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 648, Coverage: 44, minDepth: 11 [pilon] Confirmed 1593 of 1891 bases (84.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_526_length_1891_cov_15.740678:1-1891 [pilon] Processing NODE_1745_length_1163_cov_3.373321:1-1163 [pilon] NODE_1569_length_1230_cov_37.708747:1-1230 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 972, Coverage: 90, minDepth: 23 [pilon] Confirmed 1091 of 1230 bases (88.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1569_length_1230_cov_37.708747:1-1230 [pilon] Processing NODE_3527_length_780_cov_1.095599:1-780 [pilon] NODE_5698_length_563_cov_49.477376:1-563 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 477, Coverage: 70, minDepth: 18 [pilon] Confirmed 494 of 563 bases (87.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5698_length_563_cov_49.477376:1-563 [pilon] Processing NODE_13552_length_243_cov_17.918033:1-243 [pilon] NODE_8397_length_399_cov_35.068345:1-399 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 176, Coverage: 15, minDepth: 5 [pilon] Confirmed 245 of 399 bases (61.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8397_length_399_cov_35.068345:1-399 [pilon] Processing NODE_5486_length_579_cov_0.497817:1-579 [pilon] NODE_2422_length_985_cov_28.987269:1-985 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 611, Coverage: 43, minDepth: 11 [pilon] Confirmed 822 of 985 bases (83.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2422_length_985_cov_28.987269:1-985 [pilon] Processing NODE_13546_length_243_cov_17.959016:1-243 [pilon] NODE_13335_length_243_cov_19.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13335_length_243_cov_19.934426:1-243 [pilon] Processing NODE_8814_length_376_cov_24.556863:1-376 [pilon] NODE_8933_length_369_cov_22.798387:1-369 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 139, Coverage: 19, minDepth: 5 [pilon] Confirmed 296 of 369 bases (80.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8933_length_369_cov_22.798387:1-369 [pilon] Processing NODE_11660_length_258_cov_12.248175:1-258 [pilon] NODE_15169_length_177_cov_43.535714:1-177 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 177 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15169_length_177_cov_43.535714:1-177 [pilon] Processing NODE_8197_length_408_cov_24.324042:1-408 [pilon] NODE_2986_length_875_cov_26.757294:1-875 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 560, Coverage: 61, minDepth: 15 [pilon] Confirmed 799 of 875 bases (91.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2986_length_875_cov_26.757294:1-875 [pilon] Processing NODE_112_length_2921_cov_2.535357:1-2921 [pilon] NODE_10363_length_310_cov_22.677249:1-310 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 96, Coverage: 7, minDepth: 5 [pilon] Confirmed 211 of 310 bases (68.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10363_length_310_cov_22.677249:1-310 [pilon] Processing NODE_548_length_1858_cov_12.617156:1-1858 [pilon] NODE_10403_length_309_cov_10.946809:1-309 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 50, Coverage: 7, minDepth: 5 [pilon] Confirmed 211 of 309 bases (68.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10403_length_309_cov_10.946809:1-309 [pilon] Processing NODE_12797_length_243_cov_25.049180:1-243 [pilon] NODE_12668_length_243_cov_26.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12668_length_243_cov_26.581967:1-243 [pilon] Processing NODE_10076_length_322_cov_14.218905:1-322 [pilon] NODE_14768_length_243_cov_7.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14768_length_243_cov_7.967213:1-243 [pilon] Processing NODE_2580_length_950_cov_36.921592:1-950 [pilon] NODE_12363_length_243_cov_31.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12363_length_243_cov_31.786885:1-243 [pilon] Processing NODE_8733_length_381_cov_11.261538:1-381 [pilon] NODE_2988_length_874_cov_44.192563:1-874 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 776, Coverage: 76, minDepth: 19 [pilon] Confirmed 707 of 874 bases (80.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2988_length_874_cov_44.192563:1-874 [pilon] Processing NODE_11486_length_264_cov_15.125874:1-264 [pilon] NODE_10063_length_323_cov_10.534653:1-323 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 42, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 323 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10063_length_323_cov_10.534653:1-323 [pilon] Processing NODE_14323_length_243_cov_11.688525:1-243 [pilon] NODE_11446_length_265_cov_12.847222:1-265 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 42, Coverage: 4, minDepth: 5 [pilon] Confirmed 87 of 265 bases (32.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11446_length_265_cov_12.847222:1-265 [pilon] Processing NODE_14715_length_243_cov_8.467213:1-243 [pilon] NODE_4147_length_699_cov_2.664360:1-699 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 41, Coverage: 7, minDepth: 5 [pilon] Confirmed 394 of 699 bases (56.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4147_length_699_cov_2.664360:1-699 [pilon] Processing NODE_5976_length_543_cov_8.954976:1-543 [pilon] NODE_4471_length_664_cov_9.550645:1-664 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 126, Coverage: 18, minDepth: 5 [pilon] Confirmed 597 of 664 bases (89.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4471_length_664_cov_9.550645:1-664 [pilon] Processing NODE_12318_length_243_cov_32.786885:1-243 [pilon] NODE_1950_length_1098_cov_3.711361:1-1098 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 111, Coverage: 11, minDepth: 5 [pilon] Confirmed 594 of 1098 bases (54.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1950_length_1098_cov_3.711361:1-1098 [pilon] Processing NODE_14790_length_243_cov_7.786885:1-243 [pilon] NODE_7875_length_424_cov_0.815182:1-424 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 424 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7875_length_424_cov_0.815182:1-424 [pilon] Processing NODE_3865_length_732_cov_18.256956:1-732 [pilon] NODE_11929_length_249_cov_7.328125:1-249 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11929_length_249_cov_7.328125:1-249 [pilon] Processing NODE_15091_length_226_cov_5.142857:1-226 [pilon] NODE_1745_length_1163_cov_3.373321:1-1163 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 96, Coverage: 10, minDepth: 5 [pilon] Confirmed 992 of 1163 bases (85.30%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1745_length_1163_cov_3.373321:1-1163 [pilon] Processing NODE_202_length_2492_cov_19.819907:1-2492 [pilon] NODE_4760_length_639_cov_0.814672:1-639 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 1 of 639 bases (0.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4760_length_639_cov_0.814672:1-639 [pilon] Processing NODE_7270_length_456_cov_15.564179:1-456 [pilon] NODE_995_length_1496_cov_22.752000:1-1496 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 698, Coverage: 50, minDepth: 13 [pilon] Confirmed 1053 of 1496 bases (70.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_995_length_1496_cov_22.752000:1-1496 [pilon] Processing NODE_4847_length_631_cov_3.109804:1-631 [pilon] NODE_15189_length_163_cov_27.714286:1-163 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 24, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 163 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15189_length_163_cov_27.714286:1-163 [pilon] Processing NODE_626_length_1777_cov_20.739734:1-1777 [pilon] NODE_5711_length_563_cov_0.934389:1-563 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 143 of 563 bases (25.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5711_length_563_cov_0.934389:1-563 [pilon] Processing NODE_9180_length_358_cov_10.084388:1-358 [pilon] NODE_8814_length_376_cov_24.556863:1-376 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 138, Coverage: 25, minDepth: 6 [pilon] Confirmed 332 of 376 bases (88.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8814_length_376_cov_24.556863:1-376 [pilon] Processing NODE_13673_length_243_cov_16.778689:1-243 [pilon] NODE_3527_length_780_cov_1.095599:1-780 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 333 of 780 bases (42.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3527_length_780_cov_1.095599:1-780 [pilon] Processing NODE_4648_length_648_cov_10.998102:1-648 [pilon] NODE_14509_length_243_cov_10.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_11708_length_255_cov_30.492537:1-255 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 59, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11708_length_255_cov_30.492537:1-255 [pilon] Finished processing NODE_14509_length_243_cov_10.254098:1-243 [pilon] Processing NODE_4348_length_676_cov_14.805405:1-676 [pilon] Processing NODE_14923_length_243_cov_6.475410:1-243 [pilon] NODE_11469_length_264_cov_20.874126:1-264 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 63, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 264 bases (56.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11469_length_264_cov_20.874126:1-264 [pilon] Processing NODE_15208_length_155_cov_50.470588:1-155 [pilon] NODE_13552_length_243_cov_17.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13552_length_243_cov_17.918033:1-243 [pilon] Processing NODE_3815_length_739_cov_13.373786:1-739 [pilon] NODE_2431_length_982_cov_19.409988:1-982 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 481, Coverage: 16, minDepth: 5 [pilon] Confirmed 684 of 982 bases (69.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2431_length_982_cov_19.409988:1-982 [pilon] Processing NODE_15151_length_190_cov_6.782609:1-190 [pilon] NODE_5486_length_579_cov_0.497817:1-579 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 42 of 579 bases (7.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5486_length_579_cov_0.497817:1-579 [pilon] Processing NODE_6355_length_513_cov_23.553571:1-513 [pilon] NODE_11660_length_258_cov_12.248175:1-258 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 43, Coverage: 7, minDepth: 5 [pilon] Confirmed 188 of 258 bases (72.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11660_length_258_cov_12.248175:1-258 [pilon] Processing NODE_14333_length_243_cov_11.598361:1-243 [pilon] NODE_13546_length_243_cov_17.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13546_length_243_cov_17.959016:1-243 [pilon] Processing NODE_13262_length_243_cov_20.491803:1-243 [pilon] NODE_8197_length_408_cov_24.324042:1-408 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 159, Coverage: 22, minDepth: 6 [pilon] Confirmed 300 of 408 bases (73.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8197_length_408_cov_24.324042:1-408 [pilon] Processing NODE_1815_length_1143_cov_2.404110:1-1143 [pilon] NODE_10076_length_322_cov_14.218905:1-322 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 41, Coverage: 3, minDepth: 5 [pilon] Confirmed 108 of 322 bases (33.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10076_length_322_cov_14.218905:1-322 [pilon] Processing NODE_2206_length_1032_cov_1.823271:1-1032 [pilon] NODE_12797_length_243_cov_25.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12797_length_243_cov_25.049180:1-243 [pilon] Processing NODE_13932_length_243_cov_14.663934:1-243 [pilon] NODE_2580_length_950_cov_36.921592:1-950 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 693, Coverage: 80, minDepth: 20 [pilon] Confirmed 888 of 950 bases (93.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2580_length_950_cov_36.921592:1-950 [pilon] Processing NODE_10255_length_315_cov_10.762887:1-315 [pilon] NODE_112_length_2921_cov_2.535357:1-2921 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 185, Coverage: 8, minDepth: 5 [pilon] Confirmed 1578 of 2921 bases (54.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_112_length_2921_cov_2.535357:1-2921 [pilon] Processing NODE_1811_length_1144_cov_15.229717:1-1144 [pilon] NODE_8733_length_381_cov_11.261538:1-381 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 69, Coverage: 10, minDepth: 5 [pilon] Confirmed 276 of 381 bases (72.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8733_length_381_cov_11.261538:1-381 [pilon] Processing NODE_1047_length_1470_cov_14.280208:1-1470 [pilon] NODE_548_length_1858_cov_12.617156:1-1858 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 561, Coverage: 31, minDepth: 8 [pilon] Confirmed 1411 of 1858 bases (75.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_548_length_1858_cov_12.617156:1-1858 [pilon] Processing NODE_9756_length_336_cov_14.237209:1-336 [pilon] NODE_11486_length_264_cov_15.125874:1-264 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 52, Coverage: 5, minDepth: 5 [pilon] Confirmed 140 of 264 bases (53.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11486_length_264_cov_15.125874:1-264 [pilon] Processing NODE_14655_length_243_cov_8.975410:1-243 [pilon] NODE_13673_length_243_cov_16.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13673_length_243_cov_16.778689:1-243 [pilon] Processing NODE_5079_length_612_cov_1.299389:1-612 [pilon] NODE_14715_length_243_cov_8.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14715_length_243_cov_8.467213:1-243 [pilon] Processing NODE_7598_length_438_cov_6.760252:1-438 [pilon] NODE_14323_length_243_cov_11.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14323_length_243_cov_11.688525:1-243 [pilon] Processing NODE_5475_length_579_cov_17.181223:1-579 [pilon] NODE_5976_length_543_cov_8.954976:1-543 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 109, Coverage: 10, minDepth: 5 [pilon] Confirmed 335 of 543 bases (61.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5976_length_543_cov_8.954976:1-543 [pilon] Processing NODE_1496_length_1259_cov_22.942004:1-1259 [pilon] NODE_3815_length_739_cov_13.373786:1-739 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 211, Coverage: 23, minDepth: 6 [pilon] Confirmed 438 of 739 bases (59.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3815_length_739_cov_13.373786:1-739 [pilon] Processing NODE_1574_length_1228_cov_46.760614:1-1228 [pilon] NODE_12318_length_243_cov_32.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 83, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12318_length_243_cov_32.786885:1-243 [pilon] Processing NODE_15030_length_243_cov_5.090164:1-243 [pilon] NODE_14790_length_243_cov_7.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14790_length_243_cov_7.786885:1-243 [pilon] Processing NODE_12169_length_243_cov_38.155738:1-243 [pilon] NODE_15091_length_226_cov_5.142857:1-226 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 226 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15091_length_226_cov_5.142857:1-226 [pilon] Processing NODE_15164_length_181_cov_6.316667:1-181 [pilon] NODE_7270_length_456_cov_15.564179:1-456 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 122, Coverage: 18, minDepth: 5 [pilon] Confirmed 297 of 456 bases (65.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7270_length_456_cov_15.564179:1-456 [pilon] Processing NODE_9100_length_361_cov_24.100000:1-361 [pilon] NODE_202_length_2492_cov_19.819907:1-2492 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 1061, Coverage: 37, minDepth: 9 [pilon] Confirmed 2095 of 2492 bases (84.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_202_length_2492_cov_19.819907:1-2492 [pilon] Processing NODE_12457_length_243_cov_29.770492:1-243 [pilon] NODE_9180_length_358_cov_10.084388:1-358 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 66, Coverage: 11, minDepth: 5 [pilon] Confirmed 251 of 358 bases (70.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9180_length_358_cov_10.084388:1-358 [pilon] Processing NODE_7111_length_465_cov_10.375000:1-465 [pilon] NODE_4648_length_648_cov_10.998102:1-648 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 131, Coverage: 18, minDepth: 5 [pilon] Confirmed 487 of 648 bases (75.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4648_length_648_cov_10.998102:1-648 [pilon] Processing NODE_13183_length_243_cov_21.254098:1-243 [pilon] NODE_3865_length_732_cov_18.256956:1-732 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 270, Coverage: 29, minDepth: 7 [pilon] Confirmed 702 of 732 bases (95.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3865_length_732_cov_18.256956:1-732 [pilon] Processing NODE_9419_length_349_cov_19.605263:1-349 [pilon] NODE_4847_length_631_cov_3.109804:1-631 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 40, Coverage: 8, minDepth: 5 [pilon] Confirmed 386 of 631 bases (61.17%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4847_length_631_cov_3.109804:1-631 [pilon] Processing NODE_10563_length_303_cov_8.346154:1-303 [pilon] NODE_14923_length_243_cov_6.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14923_length_243_cov_6.475410:1-243 [pilon] Processing NODE_5440_length_581_cov_13.978261:1-581 [pilon] NODE_626_length_1777_cov_20.739734:1-1777 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 621, Coverage: 16, minDepth: 5 [pilon] Confirmed 1060 of 1777 bases (59.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_626_length_1777_cov_20.739734:1-1777 [pilon] Processing NODE_1088_length_1447_cov_10.340875:1-1447 [pilon] NODE_4348_length_676_cov_14.805405:1-676 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 208, Coverage: 30, minDepth: 8 [pilon] Confirmed 523 of 676 bases (77.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4348_length_676_cov_14.805405:1-676 [pilon] Processing NODE_5641_length_568_cov_0.762864:1-568 [pilon] NODE_15208_length_155_cov_50.470588:1-155 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 155 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15208_length_155_cov_50.470588:1-155 [pilon] Processing NODE_4015_length_714_cov_13.726813:1-714 [pilon] NODE_15151_length_190_cov_6.782609:1-190 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 190 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15151_length_190_cov_6.782609:1-190 [pilon] Processing NODE_135_length_2804_cov_14.558330:1-2804 [pilon] NODE_14333_length_243_cov_11.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14333_length_243_cov_11.598361:1-243 [pilon] Processing NODE_8512_length_393_cov_18.886029:1-393 [pilon] NODE_6355_length_513_cov_23.553571:1-513 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 216, Coverage: 29, minDepth: 7 [pilon] Confirmed 453 of 513 bases (88.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6355_length_513_cov_23.553571:1-513 [pilon] Processing NODE_3239_length_826_cov_32.791489:1-826 [pilon] NODE_13262_length_243_cov_20.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13262_length_243_cov_20.491803:1-243 [pilon] Processing NODE_14728_length_243_cov_8.360656:1-243 [pilon] NODE_1815_length_1143_cov_2.404110:1-1143 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 66, Coverage: 8, minDepth: 5 [pilon] Confirmed 822 of 1143 bases (71.92%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1815_length_1143_cov_2.404110:1-1143 [pilon] NODE_2206_length_1032_cov_1.823271:1-1032 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 42, Coverage: 5, minDepth: 5 [pilon] Confirmed 565 of 1032 bases (54.75%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_2673_length_933_cov_14.128079:1-933 [pilon] Finished processing NODE_2206_length_1032_cov_1.823271:1-1032 [pilon] Processing NODE_13555_length_243_cov_17.893443:1-243 [pilon] NODE_13932_length_243_cov_14.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13932_length_243_cov_14.663934:1-243 [pilon] Processing NODE_1075_length_1454_cov_17.307577:1-1454 [pilon] NODE_1574_length_1228_cov_46.760614:1-1228 log: [pilon] frags shovill.bam: coverage 103 [pilon] Total Reads: 1202, Coverage: 103, minDepth: 26 [pilon] Confirmed 996 of 1228 bases (81.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1574_length_1228_cov_46.760614:1-1228 [pilon] Processing NODE_3095_length_854_cov_4.357435:1-854 [pilon] NODE_12169_length_243_cov_38.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 101, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12169_length_243_cov_38.155738:1-243 [pilon] Processing NODE_2209_length_1031_cov_27.901099:1-1031 [pilon] NODE_10255_length_315_cov_10.762887:1-315 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 55, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10255_length_315_cov_10.762887:1-315 [pilon] Processing NODE_1034_length_1477_cov_32.189528:1-1477 [pilon] NODE_7598_length_438_cov_6.760252:1-438 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 50, Coverage: 6, minDepth: 5 [pilon] Confirmed 281 of 438 bases (64.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7598_length_438_cov_6.760252:1-438 [pilon] Processing NODE_5168_length_604_cov_17.536232:1-604 [pilon] NODE_1811_length_1144_cov_15.229717:1-1144 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 422, Coverage: 39, minDepth: 10 [pilon] Confirmed 905 of 1144 bases (79.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1811_length_1144_cov_15.229717:1-1144 [pilon] Processing NODE_12333_length_243_cov_32.516393:1-243 [pilon] NODE_1047_length_1470_cov_14.280208:1-1470 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 463, Coverage: 26, minDepth: 7 [pilon] Confirmed 1375 of 1470 bases (93.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1047_length_1470_cov_14.280208:1-1470 [pilon] Processing NODE_13084_length_243_cov_22.098361:1-243 [pilon] NODE_9756_length_336_cov_14.237209:1-336 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 94, Coverage: 6, minDepth: 5 [pilon] Confirmed 184 of 336 bases (54.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9756_length_336_cov_14.237209:1-336 [pilon] Processing NODE_6526_length_502_cov_0.645669:1-502 [pilon] NODE_5475_length_579_cov_17.181223:1-579 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 194, Coverage: 31, minDepth: 8 [pilon] Confirmed 445 of 579 bases (76.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5475_length_579_cov_17.181223:1-579 [pilon] Processing NODE_11558_length_261_cov_31.078571:1-261 [pilon] NODE_14655_length_243_cov_8.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14655_length_243_cov_8.975410:1-243 [pilon] Processing NODE_1108_length_1437_cov_1.726444:1-1437 [pilon] NODE_5079_length_612_cov_1.299389:1-612 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 27, Coverage: 6, minDepth: 5 [pilon] Confirmed 322 of 612 bases (52.61%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5079_length_612_cov_1.299389:1-612 [pilon] Processing NODE_5018_length_617_cov_16.701613:1-617 [pilon] NODE_15030_length_243_cov_5.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15030_length_243_cov_5.090164:1-243 [pilon] Processing NODE_3459_length_790_cov_19.853513:1-790 [pilon] NODE_1496_length_1259_cov_22.942004:1-1259 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 729, Coverage: 60, minDepth: 15 [pilon] Confirmed 1128 of 1259 bases (89.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1496_length_1259_cov_22.942004:1-1259 [pilon] Processing NODE_8924_length_369_cov_37.108871:1-369 [pilon] NODE_15164_length_181_cov_6.316667:1-181 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 181 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15164_length_181_cov_6.316667:1-181 [pilon] Processing NODE_3578_length_773_cov_6.815951:1-773 [pilon] NODE_9100_length_361_cov_24.100000:1-361 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 126, Coverage: 17, minDepth: 5 [pilon] Confirmed 295 of 361 bases (81.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9100_length_361_cov_24.100000:1-361 [pilon] Processing NODE_10135_length_320_cov_38.045226:1-320 [pilon] NODE_12457_length_243_cov_29.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12457_length_243_cov_29.770492:1-243 [pilon] Processing NODE_898_length_1562_cov_23.925052:1-1562 [pilon] NODE_7111_length_465_cov_10.375000:1-465 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 294 of 465 bases (63.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7111_length_465_cov_10.375000:1-465 [pilon] Processing NODE_6407_length_510_cov_12.470437:1-510 [pilon] NODE_10563_length_303_cov_8.346154:1-303 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 23, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 303 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10563_length_303_cov_8.346154:1-303 [pilon] Processing NODE_6903_length_477_cov_19.727528:1-477 [pilon] NODE_13183_length_243_cov_21.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13183_length_243_cov_21.254098:1-243 [pilon] Processing NODE_7470_length_444_cov_24.513932:1-444 [pilon] NODE_9419_length_349_cov_19.605263:1-349 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 95, Coverage: 4, minDepth: 5 [pilon] Confirmed 148 of 349 bases (42.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9419_length_349_cov_19.605263:1-349 [pilon] Processing NODE_10760_length_295_cov_9.040230:1-295 [pilon] NODE_1088_length_1447_cov_10.340875:1-1447 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 345, Coverage: 22, minDepth: 6 [pilon] Confirmed 1151 of 1447 bases (79.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1088_length_1447_cov_10.340875:1-1447 [pilon] Processing NODE_3419_length_796_cov_0.937778:1-796 [pilon] NODE_4015_length_714_cov_13.726813:1-714 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 160, Coverage: 15, minDepth: 5 [pilon] Confirmed 472 of 714 bases (66.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4015_length_714_cov_13.726813:1-714 [pilon] Processing NODE_1562_length_1233_cov_18.732014:1-1233 [pilon] NODE_5641_length_568_cov_0.762864:1-568 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 98 of 568 bases (17.25%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5641_length_568_cov_0.762864:1-568 [pilon] Processing NODE_14877_length_243_cov_6.918033:1-243 [pilon] NODE_5440_length_581_cov_13.978261:1-581 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 138, Coverage: 31, minDepth: 8 [pilon] Confirmed 485 of 581 bases (83.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5440_length_581_cov_13.978261:1-581 [pilon] Processing NODE_3611_length_767_cov_9.729102:1-767 [pilon] NODE_8512_length_393_cov_18.886029:1-393 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 121, Coverage: 17, minDepth: 5 [pilon] Confirmed 291 of 393 bases (74.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8512_length_393_cov_18.886029:1-393 [pilon] Processing NODE_14741_length_243_cov_8.180328:1-243 [pilon] NODE_2673_length_933_cov_14.128079:1-933 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 342, Coverage: 38, minDepth: 10 [pilon] Confirmed 800 of 933 bases (85.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2673_length_933_cov_14.128079:1-933 [pilon] Processing NODE_12256_length_243_cov_34.344262:1-243 [pilon] NODE_135_length_2804_cov_14.558330:1-2804 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 956, Coverage: 36, minDepth: 9 [pilon] Confirmed 2395 of 2804 bases (85.41%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_135_length_2804_cov_14.558330:1-2804 [pilon] Processing NODE_6230_length_522_cov_22.665835:1-522 [pilon] NODE_3239_length_826_cov_32.791489:1-826 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 519, Coverage: 70, minDepth: 18 [pilon] Confirmed 620 of 826 bases (75.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3239_length_826_cov_32.791489:1-826 [pilon] Processing NODE_2947_length_882_cov_14.115637:1-882 [pilon] NODE_1034_length_1477_cov_32.189528:1-1477 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 941, Coverage: 54, minDepth: 14 [pilon] Confirmed 1148 of 1477 bases (77.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1034_length_1477_cov_32.189528:1-1477 [pilon] Processing NODE_1819_length_1140_cov_15.239450:1-1140 [pilon] NODE_14728_length_243_cov_8.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14728_length_243_cov_8.360656:1-243 [pilon] Processing NODE_6368_length_512_cov_63.209719:1-512 [pilon] NODE_13555_length_243_cov_17.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13555_length_243_cov_17.893443:1-243 [pilon] Processing NODE_11264_length_273_cov_17.144737:1-273 [pilon] NODE_5168_length_604_cov_17.536232:1-604 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 305, Coverage: 32, minDepth: 8 [pilon] Confirmed 390 of 604 bases (64.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5168_length_604_cov_17.536232:1-604 [pilon] Processing NODE_14118_length_243_cov_13.344262:1-243 [pilon] NODE_1075_length_1454_cov_17.307577:1-1454 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 647, Coverage: 26, minDepth: 7 [pilon] Confirmed 1297 of 1454 bases (89.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1075_length_1454_cov_17.307577:1-1454 [pilon] Processing NODE_4869_length_629_cov_17.933071:1-629 [pilon] NODE_3095_length_854_cov_4.357435:1-854 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 89, Coverage: 14, minDepth: 5 [pilon] Confirmed 725 of 854 bases (84.89%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3095_length_854_cov_4.357435:1-854 [pilon] Processing NODE_2640_length_940_cov_1.860806:1-940 [pilon] NODE_12333_length_243_cov_32.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12333_length_243_cov_32.516393:1-243 [pilon] Processing NODE_607_length_1802_cov_15.437835:1-1802 [pilon] NODE_13084_length_243_cov_22.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13084_length_243_cov_22.098361:1-243 [pilon] Processing NODE_3124_length_847_cov_29.517906:1-847 [pilon] NODE_6526_length_502_cov_0.645669:1-502 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 502 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6526_length_502_cov_0.645669:1-502 [pilon] Processing NODE_4965_length_621_cov_19.124000:1-621 [pilon] NODE_2209_length_1031_cov_27.901099:1-1031 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 660, Coverage: 41, minDepth: 10 [pilon] Confirmed 759 of 1031 bases (73.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2209_length_1031_cov_27.901099:1-1031 [pilon] Processing NODE_4036_length_711_cov_26.854237:1-711 [pilon] NODE_11558_length_261_cov_31.078571:1-261 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 97, Coverage: 8, minDepth: 5 [pilon] Confirmed 208 of 261 bases (79.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_1108_length_1437_cov_1.726444:1-1437 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 72, Coverage: 7, minDepth: 5 [pilon] Confirmed 786 of 1437 bases (54.70%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1108_length_1437_cov_1.726444:1-1437 [pilon] Finished processing NODE_11558_length_261_cov_31.078571:1-261 [pilon] Processing NODE_13851_length_243_cov_15.303279:1-243 [pilon] Processing NODE_12846_length_243_cov_24.557377:1-243 [pilon] NODE_5018_length_617_cov_16.701613:1-617 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 210, Coverage: 23, minDepth: 6 [pilon] Confirmed 484 of 617 bases (78.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5018_length_617_cov_16.701613:1-617 [pilon] Processing NODE_14970_length_243_cov_5.827869:1-243 [pilon] NODE_3578_length_773_cov_6.815951:1-773 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 103, Coverage: 15, minDepth: 5 [pilon] Confirmed 674 of 773 bases (87.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3578_length_773_cov_6.815951:1-773 [pilon] Processing NODE_1457_length_1278_cov_20.452895:1-1278 [pilon] NODE_8924_length_369_cov_37.108871:1-369 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 210, Coverage: 43, minDepth: 11 [pilon] Confirmed 320 of 369 bases (86.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8924_length_369_cov_37.108871:1-369 [pilon] Processing NODE_13308_length_243_cov_20.188525:1-243 [pilon] NODE_3459_length_790_cov_19.853513:1-790 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 295, Coverage: 44, minDepth: 11 [pilon] Confirmed 647 of 790 bases (81.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3459_length_790_cov_19.853513:1-790 [pilon] Processing NODE_7429_length_447_cov_2.193252:1-447 [pilon] NODE_898_length_1562_cov_23.925052:1-1562 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 725, Coverage: 38, minDepth: 10 [pilon] Confirmed 1371 of 1562 bases (87.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_898_length_1562_cov_23.925052:1-1562 [pilon] Processing NODE_8682_length_383_cov_52.633588:1-383 [pilon] NODE_10135_length_320_cov_38.045226:1-320 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 163, Coverage: 18, minDepth: 5 [pilon] Confirmed 256 of 320 bases (80.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10135_length_320_cov_38.045226:1-320 [pilon] Processing NODE_5505_length_577_cov_1.046053:1-577 [pilon] NODE_6903_length_477_cov_19.727528:1-477 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 153, Coverage: 24, minDepth: 6 [pilon] Confirmed 339 of 477 bases (71.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6903_length_477_cov_19.727528:1-477 [pilon] Processing NODE_10800_length_294_cov_1.797688:1-294 [pilon] NODE_6407_length_510_cov_12.470437:1-510 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 125, Coverage: 10, minDepth: 5 [pilon] Confirmed 348 of 510 bases (68.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6407_length_510_cov_12.470437:1-510 [pilon] Processing NODE_8123_length_412_cov_1.436426:1-412 [pilon] NODE_7470_length_444_cov_24.513932:1-444 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 179, Coverage: 13, minDepth: 5 [pilon] Confirmed 251 of 444 bases (56.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7470_length_444_cov_24.513932:1-444 [pilon] Processing NODE_9717_length_337_cov_20.162037:1-337 [pilon] NODE_3419_length_796_cov_0.937778:1-796 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 28, Coverage: 4, minDepth: 5 [pilon] Confirmed 364 of 796 bases (45.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3419_length_796_cov_0.937778:1-796 [pilon] Processing NODE_2544_length_957_cov_21.169856:1-957 [pilon] NODE_14877_length_243_cov_6.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14877_length_243_cov_6.918033:1-243 [pilon] Processing NODE_12630_length_243_cov_27.163934:1-243 [pilon] NODE_10760_length_295_cov_9.040230:1-295 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 33, Coverage: 7, minDepth: 5 [pilon] Confirmed 232 of 295 bases (78.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10760_length_295_cov_9.040230:1-295 [pilon] Processing NODE_13886_length_243_cov_15.008197:1-243 [pilon] NODE_14741_length_243_cov_8.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14741_length_243_cov_8.180328:1-243 [pilon] Processing NODE_1621_length_1210_cov_23.774105:1-1210 [pilon] NODE_3611_length_767_cov_9.729102:1-767 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 148, Coverage: 13, minDepth: 5 [pilon] Confirmed 642 of 767 bases (83.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3611_length_767_cov_9.729102:1-767 [pilon] Processing NODE_3760_length_746_cov_2.977600:1-746 [pilon] NODE_1562_length_1233_cov_18.732014:1-1233 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 488, Coverage: 38, minDepth: 10 [pilon] Confirmed 1097 of 1233 bases (88.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1562_length_1233_cov_18.732014:1-1233 [pilon] Processing NODE_12995_length_243_cov_22.983607:1-243 [pilon] NODE_6230_length_522_cov_22.665835:1-522 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 217, Coverage: 9, minDepth: 5 [pilon] Confirmed 292 of 522 bases (55.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6230_length_522_cov_22.665835:1-522 [pilon] Processing NODE_10842_length_291_cov_9.252941:1-291 [pilon] NODE_12256_length_243_cov_34.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12256_length_243_cov_34.344262:1-243 [pilon] Processing NODE_2838_length_904_cov_4.213282:1-904 [pilon] NODE_11264_length_273_cov_17.144737:1-273 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 65, Coverage: 7, minDepth: 5 [pilon] Confirmed 168 of 273 bases (61.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11264_length_273_cov_17.144737:1-273 [pilon] Processing NODE_8254_length_406_cov_13.803509:1-406 [pilon] NODE_1819_length_1140_cov_15.239450:1-1140 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 447, Coverage: 46, minDepth: 12 [pilon] Confirmed 786 of 1140 bases (68.95%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1819_length_1140_cov_15.239450:1-1140 [pilon] Processing NODE_7869_length_424_cov_1.963696:1-424 [pilon] NODE_14118_length_243_cov_13.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14118_length_243_cov_13.344262:1-243 [pilon] Processing NODE_2592_length_946_cov_48.728485:1-946 [pilon] NODE_6368_length_512_cov_63.209719:1-512 log: [pilon] frags shovill.bam: coverage 99 [pilon] Total Reads: 563, Coverage: 99, minDepth: 25 [pilon] Confirmed 446 of 512 bases (87.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6368_length_512_cov_63.209719:1-512 [pilon] Processing NODE_5653_length_567_cov_1.022422:1-567 [pilon] NODE_2947_length_882_cov_14.115637:1-882 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 285, Coverage: 29, minDepth: 7 [pilon] Confirmed 796 of 882 bases (90.25%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2947_length_882_cov_14.115637:1-882 [pilon] Processing NODE_3836_length_736_cov_2.343089:1-736 [pilon] NODE_2640_length_940_cov_1.860806:1-940 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 39, Coverage: 5, minDepth: 5 [pilon] Confirmed 437 of 940 bases (46.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2640_length_940_cov_1.860806:1-940 [pilon] Processing NODE_40_length_3957_cov_27.478884:1-3957 [pilon] NODE_4869_length_629_cov_17.933071:1-629 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 221, Coverage: 18, minDepth: 5 [pilon] Confirmed 573 of 629 bases (91.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4869_length_629_cov_17.933071:1-629 [pilon] Processing NODE_10075_length_322_cov_15.094527:1-322 [pilon] NODE_12846_length_243_cov_24.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12846_length_243_cov_24.557377:1-243 [pilon] Processing NODE_13298_length_243_cov_20.245902:1-243 [pilon] NODE_8682_length_383_cov_52.633588:1-383 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 316, Coverage: 49, minDepth: 12 [pilon] Confirmed 340 of 383 bases (88.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8682_length_383_cov_52.633588:1-383 [pilon] Processing NODE_11392_length_267_cov_24.780822:1-267 [pilon] NODE_3124_length_847_cov_29.517906:1-847 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 518, Coverage: 49, minDepth: 12 [pilon] Confirmed 612 of 847 bases (72.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3124_length_847_cov_29.517906:1-847 [pilon] Processing NODE_14745_length_243_cov_8.139344:1-243 [pilon] NODE_607_length_1802_cov_15.437835:1-1802 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 717, Coverage: 45, minDepth: 11 [pilon] Confirmed 1211 of 1802 bases (67.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_607_length_1802_cov_15.437835:1-1802 [pilon] Processing NODE_5392_length_585_cov_1.064655:1-585 [pilon] NODE_1457_length_1278_cov_20.452895:1-1278 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 599, Coverage: 51, minDepth: 13 [pilon] Confirmed 1142 of 1278 bases (89.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1457_length_1278_cov_20.452895:1-1278 [pilon] Processing NODE_4328_length_678_cov_2.165171:1-678 [pilon] NODE_14970_length_243_cov_5.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14970_length_243_cov_5.827869:1-243 [pilon] NODE_13851_length_243_cov_15.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_4375_length_673_cov_27.735507:1-673 [pilon] Finished processing NODE_13851_length_243_cov_15.303279:1-243 [pilon] Processing NODE_3308_length_814_cov_1.121212:1-814 [pilon] NODE_4965_length_621_cov_19.124000:1-621 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 244, Coverage: 13, minDepth: 5 [pilon] Confirmed 495 of 621 bases (79.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4965_length_621_cov_19.124000:1-621 [pilon] Processing NODE_513_length_1904_cov_1.782389:1-1904 [pilon] NODE_4036_length_711_cov_26.854237:1-711 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 369, Coverage: 45, minDepth: 11 [pilon] Confirmed 636 of 711 bases (89.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4036_length_711_cov_26.854237:1-711 [pilon] Processing NODE_14620_length_243_cov_9.245902:1-243 [pilon] NODE_13308_length_243_cov_20.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13308_length_243_cov_20.188525:1-243 [pilon] Processing NODE_6441_length_507_cov_22.624352:1-507 [pilon] NODE_7429_length_447_cov_2.193252:1-447 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 22, Coverage: 6, minDepth: 5 [pilon] Confirmed 334 of 447 bases (74.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7429_length_447_cov_2.193252:1-447 [pilon] Processing NODE_3929_length_724_cov_9.484245:1-724 [pilon] NODE_8123_length_412_cov_1.436426:1-412 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 165 of 412 bases (40.05%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8123_length_412_cov_1.436426:1-412 [pilon] Processing NODE_2448_length_978_cov_5.331389:1-978 [pilon] NODE_9717_length_337_cov_20.162037:1-337 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 87, Coverage: 12, minDepth: 5 [pilon] Confirmed 252 of 337 bases (74.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9717_length_337_cov_20.162037:1-337 [pilon] Processing NODE_14440_length_243_cov_10.737705:1-243 [pilon] NODE_5505_length_577_cov_1.046053:1-577 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 185 of 577 bases (32.06%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5505_length_577_cov_1.046053:1-577 [pilon] Processing NODE_5272_length_595_cov_0.932489:1-595 [pilon] NODE_10800_length_294_cov_1.797688:1-294 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 294 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10800_length_294_cov_1.797688:1-294 [pilon] Processing NODE_13007_length_243_cov_22.844262:1-243 [pilon] NODE_10842_length_291_cov_9.252941:1-291 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 39, Coverage: 5, minDepth: 5 [pilon] Confirmed 143 of 291 bases (49.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10842_length_291_cov_9.252941:1-291 [pilon] Processing NODE_968_length_1514_cov_21.521177:1-1514 [pilon] NODE_2544_length_957_cov_21.169856:1-957 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 443, Coverage: 46, minDepth: 12 [pilon] Confirmed 902 of 957 bases (94.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2544_length_957_cov_21.169856:1-957 [pilon] Processing NODE_5803_length_555_cov_3.301843:1-555 [pilon] NODE_12995_length_243_cov_22.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12995_length_243_cov_22.983607:1-243 [pilon] Processing NODE_12990_length_243_cov_23.040984:1-243 [pilon] NODE_12630_length_243_cov_27.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12630_length_243_cov_27.163934:1-243 [pilon] Processing NODE_8835_length_375_cov_18.102362:1-375 [pilon] NODE_13886_length_243_cov_15.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13886_length_243_cov_15.008197:1-243 [pilon] Processing NODE_6487_length_504_cov_18.590078:1-504 [pilon] NODE_3760_length_746_cov_2.977600:1-746 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 52, Coverage: 8, minDepth: 5 [pilon] Confirmed 483 of 746 bases (64.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3760_length_746_cov_2.977600:1-746 [pilon] Processing NODE_2276_length_1016_cov_2.388827:1-1016 [pilon] NODE_1621_length_1210_cov_23.774105:1-1210 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 609, Coverage: 54, minDepth: 14 [pilon] Confirmed 1052 of 1210 bases (86.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1621_length_1210_cov_23.774105:1-1210 [pilon] Processing NODE_11317_length_270_cov_30.436242:1-270 [pilon] NODE_2838_length_904_cov_4.213282:1-904 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 87, Coverage: 12, minDepth: 5 [pilon] Confirmed 705 of 904 bases (77.99%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2838_length_904_cov_4.213282:1-904 [pilon] Processing NODE_12227_length_243_cov_35.450820:1-243 [pilon] NODE_8254_length_406_cov_13.803509:1-406 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 103, Coverage: 12, minDepth: 5 [pilon] Confirmed 306 of 406 bases (75.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8254_length_406_cov_13.803509:1-406 [pilon] Processing NODE_11639_length_258_cov_19.540146:1-258 [pilon] NODE_7869_length_424_cov_1.963696:1-424 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 28, Coverage: 5, minDepth: 5 [pilon] Confirmed 237 of 424 bases (55.90%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7869_length_424_cov_1.963696:1-424 [pilon] Processing NODE_7226_length_459_cov_1.488166:1-459 [pilon] NODE_13298_length_243_cov_20.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13298_length_243_cov_20.245902:1-243 [pilon] Processing NODE_3727_length_751_cov_12.030159:1-751 [pilon] NODE_2592_length_946_cov_48.728485:1-946 log: [pilon] frags shovill.bam: coverage 110 [pilon] Total Reads: 893, Coverage: 110, minDepth: 28 [pilon] Confirmed 793 of 946 bases (83.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2592_length_946_cov_48.728485:1-946 [pilon] Processing NODE_9117_length_360_cov_29.518828:1-360 [pilon] NODE_5653_length_567_cov_1.022422:1-567 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 89 of 567 bases (15.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5653_length_567_cov_1.022422:1-567 [pilon] Processing NODE_11935_length_248_cov_21.133858:1-248 [pilon] NODE_10075_length_322_cov_15.094527:1-322 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 72, Coverage: 8, minDepth: 5 [pilon] Confirmed 225 of 322 bases (69.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10075_length_322_cov_15.094527:1-322 [pilon] Processing NODE_78_length_3195_cov_26.173064:1-3195 [pilon] NODE_3836_length_736_cov_2.343089:1-736 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 479 of 736 bases (65.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3836_length_736_cov_2.343089:1-736 [pilon] Processing NODE_5302_length_592_cov_31.734607:1-592 [pilon] NODE_14745_length_243_cov_8.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14745_length_243_cov_8.139344:1-243 [pilon] Processing NODE_1238_length_1370_cov_22.738991:1-1370 [pilon] NODE_2448_length_978_cov_5.331389:1-978 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 164, Coverage: 14, minDepth: 5 [pilon] Confirmed 713 of 978 bases (72.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2448_length_978_cov_5.331389:1-978 [pilon] Processing NODE_567_length_1838_cov_13.386139:1-1838 [pilon] NODE_11392_length_267_cov_24.780822:1-267 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 77, Coverage: 5, minDepth: 5 [pilon] Confirmed 148 of 267 bases (55.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11392_length_267_cov_24.780822:1-267 [pilon] Processing NODE_12409_length_243_cov_30.778689:1-243 [pilon] NODE_5392_length_585_cov_1.064655:1-585 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 19, Coverage: 4, minDepth: 5 [pilon] Confirmed 259 of 585 bases (44.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5392_length_585_cov_1.064655:1-585 [pilon] Processing NODE_8166_length_410_cov_24.332180:1-410 [pilon] NODE_40_length_3957_cov_27.478884:1-3957 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 2444, Coverage: 75, minDepth: 19 [pilon] Confirmed 3623 of 3957 bases (91.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_40_length_3957_cov_27.478884:1-3957 [pilon] Processing NODE_12983_length_243_cov_23.131148:1-243 [pilon] NODE_3308_length_814_cov_1.121212:1-814 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 32, Coverage: 5, minDepth: 5 [pilon] Confirmed 414 of 814 bases (50.86%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3308_length_814_cov_1.121212:1-814 [pilon] Processing NODE_2583_length_949_cov_21.433575:1-949 [pilon] NODE_4328_length_678_cov_2.165171:1-678 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 385 of 678 bases (56.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4328_length_678_cov_2.165171:1-678 [pilon] Processing NODE_15258_length_125_cov_18.250000:1-125 [pilon] NODE_4375_length_673_cov_27.735507:1-673 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 352, Coverage: 44, minDepth: 11 [pilon] Confirmed 497 of 673 bases (73.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4375_length_673_cov_27.735507:1-673 [pilon] Processing NODE_13026_length_243_cov_22.655738:1-243 [pilon] NODE_14620_length_243_cov_9.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14620_length_243_cov_9.245902:1-243 [pilon] Processing NODE_1451_length_1280_cov_9.163072:1-1280 [pilon] NODE_513_length_1904_cov_1.782389:1-1904 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 107, Coverage: 7, minDepth: 5 [pilon] Confirmed 1259 of 1904 bases (66.12%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_513_length_1904_cov_1.782389:1-1904 [pilon] Processing NODE_9315_length_354_cov_8.339056:1-354 [pilon] NODE_6441_length_507_cov_22.624352:1-507 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 214, Coverage: 18, minDepth: 5 [pilon] Confirmed 321 of 507 bases (63.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6441_length_507_cov_22.624352:1-507 [pilon] Processing NODE_641_length_1760_cov_4.115314:1-1760 [pilon] NODE_3929_length_724_cov_9.484245:1-724 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 154, Coverage: 14, minDepth: 5 [pilon] Confirmed 509 of 724 bases (70.30%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3929_length_724_cov_9.484245:1-724 [pilon] Processing NODE_13786_length_243_cov_15.795082:1-243 [pilon] NODE_14440_length_243_cov_10.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14440_length_243_cov_10.737705:1-243 [pilon] Processing NODE_14796_length_243_cov_7.721311:1-243 [pilon] NODE_5272_length_595_cov_0.932489:1-595 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 212 of 595 bases (35.63%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5272_length_595_cov_0.932489:1-595 [pilon] Processing NODE_7714_length_432_cov_10.864952:1-432 [pilon] NODE_968_length_1514_cov_21.521177:1-1514 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 731, Coverage: 51, minDepth: 13 [pilon] Confirmed 1329 of 1514 bases (87.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_968_length_1514_cov_21.521177:1-1514 [pilon] Processing NODE_4692_length_644_cov_2.166348:1-644 [pilon] NODE_5803_length_555_cov_3.301843:1-555 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 51, Coverage: 5, minDepth: 5 [pilon] Confirmed 270 of 555 bases (48.65%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5803_length_555_cov_3.301843:1-555 [pilon] Processing NODE_14397_length_243_cov_11.090164:1-243 [pilon] NODE_13007_length_243_cov_22.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13007_length_243_cov_22.844262:1-243 [pilon] Processing NODE_13171_length_243_cov_21.360656:1-243 [pilon] NODE_8835_length_375_cov_18.102362:1-375 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 124, Coverage: 24, minDepth: 6 [pilon] Confirmed 336 of 375 bases (89.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8835_length_375_cov_18.102362:1-375 [pilon] Processing NODE_4903_length_626_cov_9.605941:1-626 [pilon] NODE_12990_length_243_cov_23.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12990_length_243_cov_23.040984:1-243 [pilon] Processing NODE_9354_length_351_cov_34.321739:1-351 [pilon] NODE_6487_length_504_cov_18.590078:1-504 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 190, Coverage: 20, minDepth: 5 [pilon] Confirmed 275 of 504 bases (54.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6487_length_504_cov_18.590078:1-504 [pilon] Processing NODE_14108_length_243_cov_13.418033:1-243 [pilon] NODE_2276_length_1016_cov_2.388827:1-1016 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 60, Coverage: 8, minDepth: 5 [pilon] Confirmed 716 of 1016 bases (70.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2276_length_1016_cov_2.388827:1-1016 [pilon] Processing NODE_13870_length_243_cov_15.131148:1-243 [pilon] NODE_7226_length_459_cov_1.488166:1-459 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 267 of 459 bases (58.17%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7226_length_459_cov_1.488166:1-459 [pilon] Processing NODE_2718_length_925_cov_55.865672:1-925 [pilon] NODE_11317_length_270_cov_30.436242:1-270 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 104, Coverage: 10, minDepth: 5 [pilon] Confirmed 208 of 270 bases (77.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11317_length_270_cov_30.436242:1-270 [pilon] Processing NODE_3903_length_727_cov_26.425743:1-727 [pilon] NODE_3727_length_751_cov_12.030159:1-751 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 183, Coverage: 25, minDepth: 6 [pilon] Confirmed 662 of 751 bases (88.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3727_length_751_cov_12.030159:1-751 [pilon] Processing NODE_5772_length_558_cov_0.590389:1-558 [pilon] NODE_11639_length_258_cov_19.540146:1-258 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 201 of 258 bases (77.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11639_length_258_cov_19.540146:1-258 [pilon] Processing NODE_14283_length_243_cov_11.959016:1-243 [pilon] NODE_12227_length_243_cov_35.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12227_length_243_cov_35.450820:1-243 [pilon] Processing NODE_483_length_1926_cov_16.606094:1-1926 [pilon] NODE_78_length_3195_cov_26.173064:1-3195 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 1904, Coverage: 65, minDepth: 16 [pilon] Confirmed 2701 of 3195 bases (84.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_78_length_3195_cov_26.173064:1-3195 [pilon] Processing NODE_5624_length_569_cov_1.540179:1-569 [pilon] NODE_9117_length_360_cov_29.518828:1-360 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 128, Coverage: 10, minDepth: 5 [pilon] Confirmed 192 of 360 bases (53.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9117_length_360_cov_29.518828:1-360 [pilon] Processing NODE_13497_length_243_cov_18.377049:1-243 [pilon] NODE_11935_length_248_cov_21.133858:1-248 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 71, Coverage: 6, minDepth: 5 [pilon] Confirmed 140 of 248 bases (56.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11935_length_248_cov_21.133858:1-248 [pilon] Processing NODE_3469_length_789_cov_13.336826:1-789 [pilon] NODE_12983_length_243_cov_23.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12983_length_243_cov_23.131148:1-243 [pilon] Processing NODE_2424_length_985_cov_1.496528:1-985 [pilon] NODE_567_length_1838_cov_13.386139:1-1838 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 619, Coverage: 39, minDepth: 10 [pilon] Confirmed 1254 of 1838 bases (68.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_567_length_1838_cov_13.386139:1-1838 [pilon] Processing NODE_1314_length_1334_cov_3.999176:1-1334 [pilon] NODE_5302_length_592_cov_31.734607:1-592 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 335, Coverage: 33, minDepth: 8 [pilon] Confirmed 339 of 592 bases (57.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5302_length_592_cov_31.734607:1-592 [pilon] Processing NODE_4522_length_659_cov_47.050186:1-659 [pilon] NODE_13026_length_243_cov_22.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13026_length_243_cov_22.655738:1-243 [pilon] Processing NODE_2062_length_1069_cov_11.678270:1-1069 [pilon] NODE_12409_length_243_cov_30.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12409_length_243_cov_30.778689:1-243 [pilon] Processing NODE_14869_length_243_cov_7.008197:1-243 [pilon] NODE_15258_length_125_cov_18.250000:1-125 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 125 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15258_length_125_cov_18.250000:1-125 [pilon] Processing NODE_15212_length_153_cov_75.812500:1-153 [pilon] NODE_2583_length_949_cov_21.433575:1-949 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 414, Coverage: 41, minDepth: 10 [pilon] Confirmed 701 of 949 bases (73.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2583_length_949_cov_21.433575:1-949 [pilon] Processing NODE_2155_length_1044_cov_2.274106:1-1044 [pilon] NODE_1238_length_1370_cov_22.738991:1-1370 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 719, Coverage: 58, minDepth: 15 [pilon] Confirmed 1136 of 1370 bases (82.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1238_length_1370_cov_22.738991:1-1370 [pilon] Processing NODE_11998_length_246_cov_19.736000:1-246 [pilon] NODE_8166_length_410_cov_24.332180:1-410 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 132, Coverage: 10, minDepth: 5 [pilon] Confirmed 227 of 410 bases (55.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8166_length_410_cov_24.332180:1-410 [pilon] Processing NODE_9167_length_359_cov_11.176471:1-359 [pilon] NODE_9315_length_354_cov_8.339056:1-354 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 354 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9315_length_354_cov_8.339056:1-354 [pilon] Processing NODE_6744_length_487_cov_0.931694:1-487 [pilon] NODE_641_length_1760_cov_4.115314:1-1760 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 176, Coverage: 13, minDepth: 5 [pilon] Confirmed 1570 of 1760 bases (89.20%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_641_length_1760_cov_4.115314:1-1760 [pilon] Processing NODE_419_length_2016_cov_21.865435:1-2016 [pilon] NODE_1451_length_1280_cov_9.163072:1-1280 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 255, Coverage: 23, minDepth: 6 [pilon] Confirmed 1164 of 1280 bases (90.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1451_length_1280_cov_9.163072:1-1280 [pilon] Processing NODE_7823_length_426_cov_16.124590:1-426 [pilon] NODE_13786_length_243_cov_15.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13786_length_243_cov_15.795082:1-243 [pilon] Processing NODE_12921_length_243_cov_23.844262:1-243 [pilon] NODE_7714_length_432_cov_10.864952:1-432 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 74, Coverage: 6, minDepth: 5 [pilon] Confirmed 218 of 432 bases (50.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7714_length_432_cov_10.864952:1-432 [pilon] Processing NODE_14515_length_243_cov_10.180328:1-243 [pilon] NODE_14796_length_243_cov_7.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14796_length_243_cov_7.721311:1-243 [pilon] Processing NODE_9736_length_336_cov_29.190698:1-336 [pilon] NODE_2718_length_925_cov_55.865672:1-925 log: [pilon] frags shovill.bam: coverage 127 [pilon] Total Reads: 1013, Coverage: 127, minDepth: 32 [pilon] Confirmed 817 of 925 bases (88.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2718_length_925_cov_55.865672:1-925 [pilon] Processing NODE_13118_length_243_cov_21.819672:1-243 [pilon] NODE_4692_length_644_cov_2.166348:1-644 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 43, Coverage: 7, minDepth: 5 [pilon] Confirmed 480 of 644 bases (74.53%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4692_length_644_cov_2.166348:1-644 [pilon] Processing NODE_7204_length_460_cov_0.280236:1-460 [pilon] NODE_13171_length_243_cov_21.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13171_length_243_cov_21.360656:1-243 [pilon] Processing NODE_9263_length_355_cov_14.970085:1-355 [pilon] NODE_14397_length_243_cov_11.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14397_length_243_cov_11.090164:1-243 [pilon] Processing NODE_11237_length_274_cov_7.830065:1-274 [pilon] NODE_4903_length_626_cov_9.605941:1-626 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 111, Coverage: 17, minDepth: 5 [pilon] Confirmed 580 of 626 bases (92.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4903_length_626_cov_9.605941:1-626 [pilon] Processing NODE_3688_length_756_cov_12.497638:1-756 [pilon] NODE_5624_length_569_cov_1.540179:1-569 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 385 of 569 bases (67.66%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5624_length_569_cov_1.540179:1-569 [pilon] Processing NODE_1931_length_1103_cov_23.278004:1-1103 [pilon] NODE_9354_length_351_cov_34.321739:1-351 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 132, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 351 bases (37.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9354_length_351_cov_34.321739:1-351 [pilon] Processing NODE_8598_length_388_cov_24.632959:1-388 [pilon] NODE_14108_length_243_cov_13.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14108_length_243_cov_13.418033:1-243 [pilon] NODE_13870_length_243_cov_15.131148:1-243 log: [pilon] Processing NODE_7400_length_448_cov_9.737003:1-448 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13870_length_243_cov_15.131148:1-243 [pilon] Processing NODE_2537_length_959_cov_37.300716:1-959 [pilon] NODE_3903_length_727_cov_26.425743:1-727 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 392, Coverage: 38, minDepth: 10 [pilon] Confirmed 625 of 727 bases (85.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3903_length_727_cov_26.425743:1-727 [pilon] Processing NODE_1001_length_1494_cov_12.132556:1-1494 [pilon] NODE_5772_length_558_cov_0.590389:1-558 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 9, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 558 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5772_length_558_cov_0.590389:1-558 [pilon] Processing NODE_10030_length_324_cov_17.674877:1-324 [pilon] NODE_14283_length_243_cov_11.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14283_length_243_cov_11.959016:1-243 [pilon] Processing NODE_12575_length_243_cov_27.909836:1-243 [pilon] NODE_13497_length_243_cov_18.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13497_length_243_cov_18.377049:1-243 [pilon] Processing NODE_6581_length_498_cov_13.931034:1-498 [pilon] NODE_483_length_1926_cov_16.606094:1-1926 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 713, Coverage: 31, minDepth: 8 [pilon] Confirmed 1667 of 1926 bases (86.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_483_length_1926_cov_16.606094:1-1926 [pilon] Processing NODE_3725_length_751_cov_24.771429:1-751 [pilon] NODE_3469_length_789_cov_13.336826:1-789 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 204, Coverage: 18, minDepth: 5 [pilon] Confirmed 654 of 789 bases (82.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3469_length_789_cov_13.336826:1-789 [pilon] Processing NODE_1578_length_1228_cov_2.270099:1-1228 [pilon] NODE_2424_length_985_cov_1.496528:1-985 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 42, Coverage: 5, minDepth: 5 [pilon] Confirmed 430 of 985 bases (43.65%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2424_length_985_cov_1.496528:1-985 [pilon] Processing NODE_10944_length_286_cov_14.412121:1-286 [pilon] NODE_9167_length_359_cov_11.176471:1-359 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 65, Coverage: 17, minDepth: 5 [pilon] Confirmed 312 of 359 bases (86.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9167_length_359_cov_11.176471:1-359 [pilon] Processing NODE_14453_length_243_cov_10.663934:1-243 [pilon] NODE_1314_length_1334_cov_3.999176:1-1334 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 125, Coverage: 12, minDepth: 5 [pilon] Confirmed 1006 of 1334 bases (75.41%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1314_length_1334_cov_3.999176:1-1334 [pilon] Processing NODE_11606_length_260_cov_7.007194:1-260 [pilon] NODE_13118_length_243_cov_21.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13118_length_243_cov_21.819672:1-243 [pilon] Processing NODE_7264_length_456_cov_22.194030:1-456 [pilon] NODE_14869_length_243_cov_7.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14869_length_243_cov_7.008197:1-243 [pilon] Processing NODE_1627_length_1208_cov_16.298988:1-1208 [pilon] NODE_15212_length_153_cov_75.812500:1-153 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 53, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 153 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15212_length_153_cov_75.812500:1-153 [pilon] Processing NODE_5572_length_573_cov_1.101770:1-573 [pilon] NODE_11998_length_246_cov_19.736000:1-246 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 48, Coverage: 6, minDepth: 5 [pilon] Confirmed 141 of 246 bases (57.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11998_length_246_cov_19.736000:1-246 [pilon] Processing NODE_10955_length_285_cov_28.865854:1-285 [pilon] NODE_4522_length_659_cov_47.050186:1-659 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 542, Coverage: 81, minDepth: 20 [pilon] Confirmed 595 of 659 bases (90.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4522_length_659_cov_47.050186:1-659 [pilon] Processing NODE_1511_length_1253_cov_19.794170:1-1253 [pilon] NODE_2155_length_1044_cov_2.274106:1-1044 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 782 of 1044 bases (74.90%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2155_length_1044_cov_2.274106:1-1044 [pilon] Processing NODE_9277_length_354_cov_29.283262:1-354 [pilon] NODE_6744_length_487_cov_0.931694:1-487 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 487 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6744_length_487_cov_0.931694:1-487 [pilon] Processing NODE_7191_length_460_cov_16.970501:1-460 [pilon] NODE_2062_length_1069_cov_11.678270:1-1069 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 254, Coverage: 31, minDepth: 8 [pilon] Confirmed 929 of 1069 bases (86.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2062_length_1069_cov_11.678270:1-1069 [pilon] Processing NODE_11614_length_259_cov_10.007246:1-259 [pilon] NODE_1931_length_1103_cov_23.278004:1-1103 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 519, Coverage: 56, minDepth: 14 [pilon] Confirmed 679 of 1103 bases (61.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1931_length_1103_cov_23.278004:1-1103 [pilon] Processing NODE_7790_length_428_cov_10.918567:1-428 [pilon] NODE_7823_length_426_cov_16.124590:1-426 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 126, Coverage: 7, minDepth: 5 [pilon] Confirmed 164 of 426 bases (38.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7823_length_426_cov_16.124590:1-426 [pilon] Processing NODE_3407_length_797_cov_35.593195:1-797 [pilon] NODE_7204_length_460_cov_0.280236:1-460 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 136 of 460 bases (29.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7204_length_460_cov_0.280236:1-460 [pilon] Processing NODE_4935_length_623_cov_10.725100:1-623 [pilon] NODE_14515_length_243_cov_10.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14515_length_243_cov_10.180328:1-243 [pilon] Processing NODE_12687_length_243_cov_26.393443:1-243 [pilon] NODE_12921_length_243_cov_23.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12921_length_243_cov_23.844262:1-243 [pilon] Processing NODE_2313_length_1007_cov_24.009029:1-1007 [pilon] NODE_419_length_2016_cov_21.865435:1-2016 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 1098, Coverage: 44, minDepth: 11 [pilon] Confirmed 1650 of 2016 bases (81.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_419_length_2016_cov_21.865435:1-2016 [pilon] Processing NODE_4035_length_711_cov_28.767797:1-711 [pilon] NODE_9736_length_336_cov_29.190698:1-336 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 131, Coverage: 4, minDepth: 5 [pilon] Confirmed 141 of 336 bases (41.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9736_length_336_cov_29.190698:1-336 [pilon] Processing NODE_2656_length_936_cov_20.511656:1-936 [pilon] NODE_9263_length_355_cov_14.970085:1-355 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 49, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 355 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9263_length_355_cov_14.970085:1-355 [pilon] Processing NODE_2826_length_905_cov_22.302296:1-905 [pilon] NODE_3688_length_756_cov_12.497638:1-756 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 251, Coverage: 43, minDepth: 11 [pilon] Confirmed 551 of 756 bases (72.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3688_length_756_cov_12.497638:1-756 [pilon] Processing NODE_10444_length_306_cov_23.102703:1-306 [pilon] NODE_11237_length_274_cov_7.830065:1-274 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 26, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 274 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11237_length_274_cov_7.830065:1-274 [pilon] Processing NODE_13149_length_243_cov_21.516393:1-243 [pilon] NODE_8598_length_388_cov_24.632959:1-388 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 149, Coverage: 13, minDepth: 5 [pilon] Confirmed 278 of 388 bases (71.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8598_length_388_cov_24.632959:1-388 [pilon] Processing NODE_4189_length_695_cov_2.386760:1-695 [pilon] NODE_2537_length_959_cov_37.300716:1-959 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 741, Coverage: 73, minDepth: 18 [pilon] Confirmed 851 of 959 bases (88.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2537_length_959_cov_37.300716:1-959 [pilon] Processing NODE_9055_length_363_cov_27.743802:1-363 [pilon] NODE_6581_length_498_cov_13.931034:1-498 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 129, Coverage: 15, minDepth: 5 [pilon] Confirmed 321 of 498 bases (64.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6581_length_498_cov_13.931034:1-498 [pilon] Processing NODE_7080_length_466_cov_21.371014:1-466 [pilon] NODE_10030_length_324_cov_17.674877:1-324 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 49, Coverage: 2, minDepth: 5 [pilon] Confirmed 81 of 324 bases (25.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10030_length_324_cov_17.674877:1-324 [pilon] NODE_7400_length_448_cov_9.737003:1-448 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 53, Coverage: 9, minDepth: 5 [pilon] Confirmed 219 of 448 bases (48.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7400_length_448_cov_9.737003:1-448 [pilon] Processing NODE_8647_length_385_cov_26.178030:1-385 [pilon] Processing NODE_2220_length_1029_cov_3.564978:1-1029 [pilon] NODE_1001_length_1494_cov_12.132556:1-1494 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 427, Coverage: 32, minDepth: 8 [pilon] Confirmed 1170 of 1494 bases (78.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1001_length_1494_cov_12.132556:1-1494 [pilon] Processing NODE_13123_length_243_cov_21.762295:1-243 [pilon] NODE_7264_length_456_cov_22.194030:1-456 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 190, Coverage: 12, minDepth: 5 [pilon] Confirmed 210 of 456 bases (46.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7264_length_456_cov_22.194030:1-456 [pilon] Processing NODE_9129_length_360_cov_18.707113:1-360 [pilon] NODE_12575_length_243_cov_27.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12575_length_243_cov_27.909836:1-243 [pilon] Processing NODE_2998_length_874_cov_1.338645:1-874 [pilon] NODE_3725_length_751_cov_24.771429:1-751 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 402, Coverage: 33, minDepth: 8 [pilon] Confirmed 679 of 751 bases (90.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3725_length_751_cov_24.771429:1-751 [pilon] Processing NODE_5666_length_566_cov_1.105618:1-566 [pilon] NODE_11614_length_259_cov_10.007246:1-259 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 259 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11614_length_259_cov_10.007246:1-259 [pilon] Processing NODE_11831_length_252_cov_13.366412:1-252 [pilon] NODE_10944_length_286_cov_14.412121:1-286 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 51, Coverage: 5, minDepth: 5 [pilon] Confirmed 196 of 286 bases (68.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10944_length_286_cov_14.412121:1-286 [pilon] Processing NODE_11438_length_266_cov_14.234483:1-266 [pilon] NODE_11606_length_260_cov_7.007194:1-260 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 21, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 260 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11606_length_260_cov_7.007194:1-260 [pilon] Processing NODE_11369_length_269_cov_7.155405:1-269 [pilon] NODE_1578_length_1228_cov_2.270099:1-1228 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 717 of 1228 bases (58.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1578_length_1228_cov_2.270099:1-1228 [pilon] Processing NODE_5213_length_600_cov_22.711900:1-600 [pilon] NODE_14453_length_243_cov_10.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14453_length_243_cov_10.663934:1-243 [pilon] Processing NODE_13287_length_243_cov_20.311475:1-243 [pilon] NODE_5572_length_573_cov_1.101770:1-573 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 250 of 573 bases (43.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5572_length_573_cov_1.101770:1-573 [pilon] Processing NODE_8171_length_410_cov_1.311419:1-410 [pilon] NODE_10955_length_285_cov_28.865854:1-285 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 130, Coverage: 8, minDepth: 5 [pilon] Confirmed 189 of 285 bases (66.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10955_length_285_cov_28.865854:1-285 [pilon] Processing NODE_2381_length_994_cov_23.544101:1-994 [pilon] NODE_7191_length_460_cov_16.970501:1-460 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 149, Coverage: 18, minDepth: 5 [pilon] Confirmed 399 of 460 bases (86.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7191_length_460_cov_16.970501:1-460 [pilon] Processing NODE_502_length_1911_cov_17.250838:1-1911 [pilon] NODE_1627_length_1208_cov_16.298988:1-1208 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 539, Coverage: 48, minDepth: 12 [pilon] Confirmed 909 of 1208 bases (75.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1627_length_1208_cov_16.298988:1-1208 [pilon] Processing NODE_11214_length_276_cov_5.645161:1-276 [pilon] NODE_1511_length_1253_cov_19.794170:1-1253 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 539, Coverage: 44, minDepth: 11 [pilon] Confirmed 887 of 1253 bases (70.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7790_length_428_cov_10.918567:1-428 log: [pilon] NODE_9277_length_354_cov_29.283262:1-354 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 126, Coverage: 16, minDepth: 5 [pilon] Confirmed 213 of 354 bases (60.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9277_length_354_cov_29.283262:1-354 [pilon] Finished processing NODE_1511_length_1253_cov_19.794170:1-1253 [pilon] Processing NODE_1136_length_1423_cov_24.413978:1-1423 [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 62, Coverage: 8, minDepth: 5 [pilon] Confirmed 256 of 428 bases (59.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_2410_length_989_cov_3.872120:1-989 [pilon] Finished processing NODE_7790_length_428_cov_10.918567:1-428 [pilon] Processing NODE_6536_length_501_cov_16.005263:1-501 [pilon] NODE_12687_length_243_cov_26.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12687_length_243_cov_26.393443:1-243 [pilon] Processing NODE_6808_length_483_cov_0.925414:1-483 [pilon] NODE_4935_length_623_cov_10.725100:1-623 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 146, Coverage: 5, minDepth: 5 [pilon] Confirmed 251 of 623 bases (40.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4935_length_623_cov_10.725100:1-623 [pilon] Processing NODE_4115_length_703_cov_31.676976:1-703 [pilon] NODE_3407_length_797_cov_35.593195:1-797 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 607, Coverage: 74, minDepth: 19 [pilon] Confirmed 597 of 797 bases (74.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3407_length_797_cov_35.593195:1-797 [pilon] Processing NODE_8791_length_378_cov_8.233463:1-378 [pilon] NODE_2826_length_905_cov_22.302296:1-905 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 394, Coverage: 38, minDepth: 10 [pilon] Confirmed 810 of 905 bases (89.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2826_length_905_cov_22.302296:1-905 [pilon] Processing NODE_5850_length_551_cov_48.311628:1-551 [pilon] NODE_2656_length_936_cov_20.511656:1-936 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 400, Coverage: 36, minDepth: 9 [pilon] Confirmed 765 of 936 bases (81.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2656_length_936_cov_20.511656:1-936 [pilon] Processing NODE_10915_length_288_cov_13.964072:1-288 [pilon] NODE_4035_length_711_cov_28.767797:1-711 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 446, Coverage: 29, minDepth: 7 [pilon] Confirmed 566 of 711 bases (79.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4035_length_711_cov_28.767797:1-711 [pilon] Processing NODE_8741_length_380_cov_39.579151:1-380 [pilon] NODE_2313_length_1007_cov_24.009029:1-1007 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 521, Coverage: 60, minDepth: 15 [pilon] Confirmed 712 of 1007 bases (70.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2313_length_1007_cov_24.009029:1-1007 [pilon] Processing NODE_8270_length_405_cov_24.799296:1-405 [pilon] NODE_13149_length_243_cov_21.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13149_length_243_cov_21.516393:1-243 [pilon] Processing NODE_6026_length_539_cov_0.648325:1-539 [pilon] NODE_10444_length_306_cov_23.102703:1-306 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 100, Coverage: 9, minDepth: 5 [pilon] Confirmed 225 of 306 bases (73.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10444_length_306_cov_23.102703:1-306 [pilon] Processing NODE_6215_length_523_cov_17.803483:1-523 [pilon] NODE_11831_length_252_cov_13.366412:1-252 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 45, Coverage: 6, minDepth: 5 [pilon] Confirmed 166 of 252 bases (65.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11831_length_252_cov_13.366412:1-252 [pilon] Processing NODE_1159_length_1414_cov_17.335654:1-1414 [pilon] NODE_9129_length_360_cov_18.707113:1-360 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 88, Coverage: 13, minDepth: 5 [pilon] Confirmed 245 of 360 bases (68.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9129_length_360_cov_18.707113:1-360 [pilon] Processing NODE_6965_length_474_cov_0.866856:1-474 [pilon] NODE_4189_length_695_cov_2.386760:1-695 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 37, Coverage: 6, minDepth: 5 [pilon] Confirmed 516 of 695 bases (74.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4189_length_695_cov_2.386760:1-695 [pilon] Processing NODE_11959_length_247_cov_6.984127:1-247 [pilon] NODE_9055_length_363_cov_27.743802:1-363 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 171, Coverage: 22, minDepth: 6 [pilon] Confirmed 294 of 363 bases (80.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9055_length_363_cov_27.743802:1-363 [pilon] Processing NODE_14148_length_243_cov_13.122951:1-243 [pilon] NODE_8647_length_385_cov_26.178030:1-385 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 162, Coverage: 21, minDepth: 5 [pilon] Confirmed 349 of 385 bases (90.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8647_length_385_cov_26.178030:1-385 [pilon] Processing NODE_5534_length_575_cov_8.411894:1-575 [pilon] NODE_11369_length_269_cov_7.155405:1-269 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 269 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11369_length_269_cov_7.155405:1-269 [pilon] Processing NODE_6764_length_485_cov_26.343407:1-485 [pilon] NODE_7080_length_466_cov_21.371014:1-466 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 154, Coverage: 20, minDepth: 5 [pilon] Confirmed 300 of 466 bases (64.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7080_length_466_cov_21.371014:1-466 [pilon] Processing NODE_10806_length_293_cov_9.238372:1-293 [pilon] NODE_2220_length_1029_cov_3.564978:1-1029 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 71, Coverage: 8, minDepth: 5 [pilon] Confirmed 651 of 1029 bases (63.27%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2220_length_1029_cov_3.564978:1-1029 [pilon] Processing NODE_6265_length_520_cov_12.258145:1-520 [pilon] NODE_13123_length_243_cov_21.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13123_length_243_cov_21.762295:1-243 [pilon] Processing NODE_12101_length_244_cov_5.650407:1-244 [pilon] NODE_2998_length_874_cov_1.338645:1-874 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 32, Coverage: 5, minDepth: 5 [pilon] Confirmed 382 of 874 bases (43.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2998_length_874_cov_1.338645:1-874 [pilon] Processing NODE_125_length_2852_cov_10.360674:1-2852 [pilon] NODE_5666_length_566_cov_1.105618:1-566 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 233 of 566 bases (41.17%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5666_length_566_cov_1.105618:1-566 [pilon] Processing NODE_10056_length_323_cov_18.450495:1-323 [pilon] NODE_11438_length_266_cov_14.234483:1-266 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 47, Coverage: 3, minDepth: 5 [pilon] Confirmed 69 of 266 bases (25.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11438_length_266_cov_14.234483:1-266 [pilon] Processing NODE_438_length_1984_cov_23.570585:1-1984 [pilon] NODE_13287_length_243_cov_20.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_5213_length_600_cov_22.711900:1-600 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 195, Coverage: 15, minDepth: 5 [pilon] Confirmed 387 of 600 bases (64.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5213_length_600_cov_22.711900:1-600 [pilon] Finished processing NODE_13287_length_243_cov_20.311475:1-243 [pilon] Processing NODE_6177_length_526_cov_6.195062:1-526 [pilon] Processing NODE_9469_length_347_cov_27.672566:1-347 [pilon] NODE_8171_length_410_cov_1.311419:1-410 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 5, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 410 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8171_length_410_cov_1.311419:1-410 [pilon] Processing NODE_13010_length_243_cov_22.827869:1-243 [pilon] NODE_2381_length_994_cov_23.544101:1-994 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 480, Coverage: 50, minDepth: 13 [pilon] Confirmed 639 of 994 bases (64.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2381_length_994_cov_23.544101:1-994 [pilon] Processing NODE_13421_length_243_cov_19.090164:1-243 [pilon] NODE_11214_length_276_cov_5.645161:1-276 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 127 of 276 bases (46.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11214_length_276_cov_5.645161:1-276 [pilon] Processing NODE_14793_length_243_cov_7.762295:1-243 [pilon] NODE_502_length_1911_cov_17.250838:1-1911 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 778, Coverage: 44, minDepth: 11 [pilon] Confirmed 1448 of 1911 bases (75.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_502_length_1911_cov_17.250838:1-1911 [pilon] Processing NODE_1887_length_1116_cov_42.001005:1-1116 [pilon] NODE_6536_length_501_cov_16.005263:1-501 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 136, Coverage: 29, minDepth: 7 [pilon] Confirmed 409 of 501 bases (81.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6536_length_501_cov_16.005263:1-501 [pilon] Processing NODE_4701_length_643_cov_11.768199:1-643 [pilon] NODE_6808_length_483_cov_0.925414:1-483 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 483 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6808_length_483_cov_0.925414:1-483 [pilon] Processing NODE_1008_length_1490_cov_27.914536:1-1490 [pilon] NODE_2410_length_989_cov_3.872120:1-989 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 87, Coverage: 11, minDepth: 5 [pilon] Confirmed 797 of 989 bases (80.59%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2410_length_989_cov_3.872120:1-989 [pilon] Processing NODE_10347_length_312_cov_6.910995:1-312 [pilon] NODE_8791_length_378_cov_8.233463:1-378 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 46, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 378 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8791_length_378_cov_8.233463:1-378 [pilon] Processing NODE_9477_length_347_cov_10.486726:1-347 [pilon] NODE_1159_length_1414_cov_17.335654:1-1414 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 509, Coverage: 29, minDepth: 7 [pilon] Confirmed 1083 of 1414 bases (76.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1159_length_1414_cov_17.335654:1-1414 [pilon] Processing NODE_10552_length_303_cov_11.780220:1-303 [pilon] NODE_1136_length_1423_cov_24.413978:1-1423 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 724, Coverage: 66, minDepth: 17 [pilon] Confirmed 867 of 1423 bases (60.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1136_length_1423_cov_24.413978:1-1423 [pilon] Processing NODE_4592_length_654_cov_13.110694:1-654 [pilon] NODE_4115_length_703_cov_31.676976:1-703 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 434, Coverage: 31, minDepth: 8 [pilon] Confirmed 543 of 703 bases (77.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4115_length_703_cov_31.676976:1-703 [pilon] Processing NODE_7424_length_447_cov_3.631902:1-447 [pilon] NODE_10915_length_288_cov_13.964072:1-288 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 47, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10915_length_288_cov_13.964072:1-288 [pilon] Processing NODE_13094_length_243_cov_22.016393:1-243 [pilon] NODE_8741_length_380_cov_39.579151:1-380 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 237, Coverage: 35, minDepth: 9 [pilon] Confirmed 336 of 380 bases (88.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8741_length_380_cov_39.579151:1-380 [pilon] Processing NODE_4065_length_709_cov_2.568027:1-709 [pilon] NODE_5850_length_551_cov_48.311628:1-551 log: [pilon] frags shovill.bam: coverage 93 [pilon] Total Reads: 490, Coverage: 93, minDepth: 23 [pilon] Confirmed 480 of 551 bases (87.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5850_length_551_cov_48.311628:1-551 [pilon] Processing NODE_10254_length_315_cov_11.273196:1-315 [pilon] NODE_8270_length_405_cov_24.799296:1-405 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 167, Coverage: 24, minDepth: 6 [pilon] Confirmed 279 of 405 bases (68.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8270_length_405_cov_24.799296:1-405 [pilon] Processing NODE_2219_length_1029_cov_18.376652:1-1029 [pilon] NODE_6215_length_523_cov_17.803483:1-523 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 167, Coverage: 26, minDepth: 7 [pilon] Confirmed 458 of 523 bases (87.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6215_length_523_cov_17.803483:1-523 [pilon] Processing NODE_4752_length_639_cov_17.820463:1-639 [pilon] NODE_6026_length_539_cov_0.648325:1-539 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 55 of 539 bases (10.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6026_length_539_cov_0.648325:1-539 [pilon] Processing NODE_13047_length_243_cov_22.442623:1-243 [pilon] NODE_6764_length_485_cov_26.343407:1-485 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 202, Coverage: 24, minDepth: 6 [pilon] Confirmed 347 of 485 bases (71.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6764_length_485_cov_26.343407:1-485 [pilon] Processing NODE_11738_length_255_cov_20.261194:1-255 [pilon] NODE_6965_length_474_cov_0.866856:1-474 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 118 of 474 bases (24.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6965_length_474_cov_0.866856:1-474 [pilon] Processing NODE_2151_length_1046_cov_4.056216:1-1046 [pilon] NODE_5534_length_575_cov_8.411894:1-575 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 91, Coverage: 16, minDepth: 5 [pilon] Confirmed 450 of 575 bases (78.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5534_length_575_cov_8.411894:1-575 [pilon] Processing NODE_10918_length_288_cov_11.179641:1-288 [pilon] NODE_14148_length_243_cov_13.122951:1-243 log: [pilon] NODE_11959_length_247_cov_6.984127:1-247 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14148_length_243_cov_13.122951:1-243 [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 25, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 247 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_4288_length_683_cov_1.419929:1-683 [pilon] Finished processing NODE_11959_length_247_cov_6.984127:1-247 [pilon] Processing NODE_6541_length_501_cov_1.439474:1-501 [pilon] NODE_10806_length_293_cov_9.238372:1-293 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 38, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 293 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10806_length_293_cov_9.238372:1-293 [pilon] Processing NODE_639_length_1764_cov_16.656726:1-1764 [pilon] NODE_10056_length_323_cov_18.450495:1-323 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 84, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 323 bases (38.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10056_length_323_cov_18.450495:1-323 [pilon] Processing NODE_7293_length_454_cov_77.090090:1-454 [pilon] NODE_125_length_2852_cov_10.360674:1-2852 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 713, Coverage: 31, minDepth: 8 [pilon] Confirmed 2322 of 2852 bases (81.42%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_125_length_2852_cov_10.360674:1-2852 [pilon] Processing NODE_1539_length_1246_cov_26.665778:1-1246 [pilon] NODE_6265_length_520_cov_12.258145:1-520 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 131, Coverage: 15, minDepth: 5 [pilon] Confirmed 349 of 520 bases (67.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6265_length_520_cov_12.258145:1-520 [pilon] Processing NODE_4366_length_674_cov_21.106691:1-674 [pilon] NODE_12101_length_244_cov_5.650407:1-244 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12101_length_244_cov_5.650407:1-244 [pilon] Processing NODE_1016_length_1487_cov_23.760615:1-1487 [pilon] NODE_438_length_1984_cov_23.570585:1-1984 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 1039, Coverage: 59, minDepth: 15 [pilon] Confirmed 1643 of 1984 bases (82.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_438_length_1984_cov_23.570585:1-1984 [pilon] Processing NODE_429_length_1995_cov_20.640342:1-1995 [pilon] NODE_10552_length_303_cov_11.780220:1-303 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 53, Coverage: 3, minDepth: 5 [pilon] Confirmed 82 of 303 bases (27.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10552_length_303_cov_11.780220:1-303 [pilon] Processing NODE_652_length_1744_cov_24.895872:1-1744 [pilon] NODE_6177_length_526_cov_6.195062:1-526 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 61, Coverage: 10, minDepth: 5 [pilon] Confirmed 373 of 526 bases (70.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6177_length_526_cov_6.195062:1-526 [pilon] Processing NODE_4848_length_631_cov_2.096078:1-631 [pilon] NODE_9469_length_347_cov_27.672566:1-347 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 146, Coverage: 24, minDepth: 6 [pilon] Confirmed 309 of 347 bases (89.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9469_length_347_cov_27.672566:1-347 [pilon] Processing NODE_13662_length_243_cov_16.844262:1-243 [pilon] NODE_13010_length_243_cov_22.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13010_length_243_cov_22.827869:1-243 [pilon] Processing NODE_8250_length_406_cov_21.947368:1-406 [pilon] NODE_14793_length_243_cov_7.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14793_length_243_cov_7.762295:1-243 [pilon] Processing NODE_972_length_1512_cov_23.028037:1-1512 [pilon] NODE_4701_length_643_cov_11.768199:1-643 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 148, Coverage: 20, minDepth: 5 [pilon] Confirmed 448 of 643 bases (69.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4701_length_643_cov_11.768199:1-643 [pilon] Processing NODE_1041_length_1473_cov_16.115385:1-1473 [pilon] NODE_13421_length_243_cov_19.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13421_length_243_cov_19.090164:1-243 [pilon] Processing NODE_10718_length_297_cov_14.482955:1-297 [pilon] NODE_10347_length_312_cov_6.910995:1-312 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 30, Coverage: 3, minDepth: 5 [pilon] Confirmed 48 of 312 bases (15.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10347_length_312_cov_6.910995:1-312 [pilon] Processing NODE_10218_length_316_cov_12.866667:1-316 [pilon] NODE_11738_length_255_cov_20.261194:1-255 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 59, Coverage: 8, minDepth: 5 [pilon] Confirmed 196 of 255 bases (76.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11738_length_255_cov_20.261194:1-255 [pilon] Processing NODE_8619_length_387_cov_21.770677:1-387 [pilon] NODE_1008_length_1490_cov_27.914536:1-1490 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 981, Coverage: 46, minDepth: 12 [pilon] Confirmed 1113 of 1490 bases (74.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1008_length_1490_cov_27.914536:1-1490 [pilon] Processing NODE_13930_length_243_cov_14.672131:1-243 [pilon] NODE_9477_length_347_cov_10.486726:1-347 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 60, Coverage: 8, minDepth: 5 [pilon] Confirmed 226 of 347 bases (65.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9477_length_347_cov_10.486726:1-347 [pilon] Processing NODE_12958_length_243_cov_23.377049:1-243 [pilon] NODE_13094_length_243_cov_22.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13094_length_243_cov_22.016393:1-243 [pilon] Processing NODE_1866_length_1123_cov_20.943114:1-1123 [pilon] NODE_4065_length_709_cov_2.568027:1-709 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 37, Coverage: 6, minDepth: 5 [pilon] Confirmed 424 of 709 bases (59.80%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4065_length_709_cov_2.568027:1-709 [pilon] Processing NODE_1122_length_1428_cov_37.924254:1-1428 [pilon] NODE_7424_length_447_cov_3.631902:1-447 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 33, Coverage: 9, minDepth: 5 [pilon] Confirmed 340 of 447 bases (76.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7424_length_447_cov_3.631902:1-447 [pilon] NODE_1887_length_1116_cov_42.001005:1-1116 log: [pilon] frags shovill.bam: coverage 101 [pilon] Total Reads: 1070, Coverage: 101, minDepth: 25 [pilon] Confirmed 1020 of 1116 bases (91.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_687_length_1713_cov_13.758794:1-1713 [pilon] Finished processing NODE_1887_length_1116_cov_42.001005:1-1116 [pilon] Processing NODE_7817_length_426_cov_22.163934:1-426 [pilon] NODE_4752_length_639_cov_17.820463:1-639 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 213, Coverage: 36, minDepth: 9 [pilon] Confirmed 567 of 639 bases (88.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4752_length_639_cov_17.820463:1-639 [pilon] Processing NODE_3499_length_783_cov_29.605740:1-783 [pilon] NODE_4592_length_654_cov_13.110694:1-654 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 197, Coverage: 15, minDepth: 5 [pilon] Confirmed 455 of 654 bases (69.57%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4592_length_654_cov_13.110694:1-654 [pilon] Processing NODE_12114_length_243_cov_45.360656:1-243 [pilon] NODE_10254_length_315_cov_11.273196:1-315 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 53, Coverage: 7, minDepth: 5 [pilon] Confirmed 167 of 315 bases (53.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10254_length_315_cov_11.273196:1-315 [pilon] Processing NODE_10059_length_323_cov_13.742574:1-323 [pilon] NODE_2219_length_1029_cov_18.376652:1-1029 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 413, Coverage: 38, minDepth: 10 [pilon] Confirmed 971 of 1029 bases (94.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2219_length_1029_cov_18.376652:1-1029 [pilon] Processing NODE_4697_length_643_cov_32.618774:1-643 [pilon] NODE_2151_length_1046_cov_4.056216:1-1046 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 94, Coverage: 11, minDepth: 5 [pilon] Confirmed 913 of 1046 bases (87.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2151_length_1046_cov_4.056216:1-1046 [pilon] Processing NODE_475_length_1941_cov_23.794505:1-1941 [pilon] NODE_13047_length_243_cov_22.442623:1-243 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 54, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13047_length_243_cov_22.442623:1-243 [pilon] Processing NODE_8751_length_380_cov_15.988417:1-380 [pilon] NODE_10918_length_288_cov_11.179641:1-288 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 179 of 288 bases (62.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10918_length_288_cov_11.179641:1-288 [pilon] Processing NODE_987_length_1504_cov_10.920463:1-1504 [pilon] NODE_6541_length_501_cov_1.439474:1-501 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 167 of 501 bases (33.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6541_length_501_cov_1.439474:1-501 [pilon] Processing NODE_7245_length_457_cov_33.017857:1-457 [pilon] NODE_4288_length_683_cov_1.419929:1-683 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 35, Coverage: 6, minDepth: 5 [pilon] Confirmed 356 of 683 bases (52.12%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4288_length_683_cov_1.419929:1-683 [pilon] Processing NODE_12864_length_243_cov_24.360656:1-243 [pilon] NODE_7293_length_454_cov_77.090090:1-454 log: [pilon] frags shovill.bam: coverage 111 [pilon] Total Reads: 614, Coverage: 111, minDepth: 28 [pilon] Confirmed 412 of 454 bases (90.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7293_length_454_cov_77.090090:1-454 [pilon] Processing NODE_985_length_1505_cov_17.910405:1-1505 [pilon] NODE_639_length_1764_cov_16.656726:1-1764 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 695, Coverage: 39, minDepth: 10 [pilon] Confirmed 1422 of 1764 bases (80.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_639_length_1764_cov_16.656726:1-1764 [pilon] Processing NODE_6271_length_519_cov_37.062814:1-519 [pilon] NODE_652_length_1744_cov_24.895872:1-1744 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 916, Coverage: 63, minDepth: 16 [pilon] Confirmed 1158 of 1744 bases (66.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_652_length_1744_cov_24.895872:1-1744 [pilon] Processing NODE_2427_length_984_cov_1.899189:1-984 [pilon] NODE_1539_length_1246_cov_26.665778:1-1246 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 665, Coverage: 54, minDepth: 14 [pilon] Confirmed 1007 of 1246 bases (80.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1539_length_1246_cov_26.665778:1-1246 [pilon] Processing NODE_10100_length_321_cov_19.520000:1-321 [pilon] NODE_8619_length_387_cov_21.770677:1-387 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 124, Coverage: 14, minDepth: 5 [pilon] Confirmed 234 of 387 bases (60.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8619_length_387_cov_21.770677:1-387 [pilon] Processing NODE_693_length_1709_cov_1.948992:1-1709 [pilon] NODE_1016_length_1487_cov_23.760615:1-1487 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 786, Coverage: 60, minDepth: 15 [pilon] Confirmed 1222 of 1487 bases (82.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1016_length_1487_cov_23.760615:1-1487 [pilon] Processing NODE_6231_length_522_cov_21.304239:1-522 [pilon] NODE_4366_length_674_cov_21.106691:1-674 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 301, Coverage: 46, minDepth: 12 [pilon] Confirmed 486 of 674 bases (72.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4366_length_674_cov_21.106691:1-674 [pilon] Processing NODE_10021_length_324_cov_23.822660:1-324 [pilon] NODE_4848_length_631_cov_2.096078:1-631 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 40, Coverage: 8, minDepth: 5 [pilon] Confirmed 479 of 631 bases (75.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4848_length_631_cov_2.096078:1-631 [pilon] Processing NODE_1200_length_1398_cov_24.740016:1-1398 [pilon] NODE_429_length_1995_cov_20.640342:1-1995 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 988, Coverage: 51, minDepth: 13 [pilon] Confirmed 1614 of 1995 bases (80.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_429_length_1995_cov_20.640342:1-1995 [pilon] Processing NODE_13045_length_243_cov_22.475410:1-243 [pilon] NODE_13662_length_243_cov_16.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13662_length_243_cov_16.844262:1-243 [pilon] Processing NODE_1158_length_1414_cov_24.521268:1-1414 [pilon] NODE_10718_length_297_cov_14.482955:1-297 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 57, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10718_length_297_cov_14.482955:1-297 [pilon] Processing NODE_9866_length_331_cov_14.500000:1-331 [pilon] NODE_8250_length_406_cov_21.947368:1-406 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 184, Coverage: 4, minDepth: 5 [pilon] Confirmed 149 of 406 bases (36.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8250_length_406_cov_21.947368:1-406 [pilon] Processing NODE_14157_length_243_cov_13.032787:1-243 [pilon] NODE_1041_length_1473_cov_16.115385:1-1473 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 635, Coverage: 51, minDepth: 13 [pilon] Confirmed 933 of 1473 bases (63.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1041_length_1473_cov_16.115385:1-1473 [pilon] Processing NODE_2199_length_1034_cov_3.634173:1-1034 [pilon] NODE_972_length_1512_cov_23.028037:1-1512 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 765, Coverage: 33, minDepth: 8 [pilon] Confirmed 1217 of 1512 bases (80.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_972_length_1512_cov_23.028037:1-1512 [pilon] Processing NODE_2835_length_904_cov_19.551724:1-904 [pilon] NODE_10218_length_316_cov_12.866667:1-316 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 55, Coverage: 5, minDepth: 5 [pilon] Confirmed 144 of 316 bases (45.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10218_length_316_cov_12.866667:1-316 [pilon] Processing NODE_8274_length_405_cov_23.137324:1-405 [pilon] NODE_13930_length_243_cov_14.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13930_length_243_cov_14.672131:1-243 [pilon] Processing NODE_5811_length_554_cov_45.972286:1-554 [pilon] NODE_12958_length_243_cov_23.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12958_length_243_cov_23.377049:1-243 [pilon] Processing NODE_15097_length_223_cov_6.862745:1-223 [pilon] NODE_1866_length_1123_cov_20.943114:1-1123 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 530, Coverage: 28, minDepth: 7 [pilon] Confirmed 847 of 1123 bases (75.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1866_length_1123_cov_20.943114:1-1123 [pilon] Processing NODE_1417_length_1292_cov_21.009394:1-1292 [pilon] NODE_7817_length_426_cov_22.163934:1-426 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 176, Coverage: 21, minDepth: 5 [pilon] Confirmed 298 of 426 bases (69.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7817_length_426_cov_22.163934:1-426 [pilon] NODE_3499_length_783_cov_29.605740:1-783 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 563, Coverage: 77, minDepth: 19 [pilon] Confirmed 481 of 783 bases (61.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_5314_length_591_cov_31.940426:1-591 [pilon] Finished processing NODE_3499_length_783_cov_29.605740:1-783 [pilon] Processing NODE_13142_length_243_cov_21.606557:1-243 [pilon] NODE_10059_length_323_cov_13.742574:1-323 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 62, Coverage: 9, minDepth: 5 [pilon] Confirmed 215 of 323 bases (66.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10059_length_323_cov_13.742574:1-323 [pilon] Processing NODE_7253_length_457_cov_1.383929:1-457 [pilon] NODE_1122_length_1428_cov_37.924254:1-1428 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 1262, Coverage: 65, minDepth: 16 [pilon] Confirmed 1066 of 1428 bases (74.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1122_length_1428_cov_37.924254:1-1428 [pilon] Processing NODE_12394_length_243_cov_31.188525:1-243 [pilon] NODE_12114_length_243_cov_45.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12114_length_243_cov_45.360656:1-243 [pilon] Processing NODE_15049_length_240_cov_120.428571:1-240 [pilon] NODE_687_length_1713_cov_13.758794:1-1713 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 546, Coverage: 31, minDepth: 8 [pilon] Confirmed 1244 of 1713 bases (72.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_687_length_1713_cov_13.758794:1-1713 [pilon] Processing NODE_7471_length_444_cov_23.368421:1-444 [pilon] NODE_4697_length_643_cov_32.618774:1-643 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 413, Coverage: 51, minDepth: 13 [pilon] Confirmed 455 of 643 bases (70.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4697_length_643_cov_32.618774:1-643 [pilon] Processing NODE_6087_length_533_cov_4.742718:1-533 [pilon] NODE_2427_length_984_cov_1.899189:1-984 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 53, Coverage: 6, minDepth: 5 [pilon] Confirmed 616 of 984 bases (62.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2427_length_984_cov_1.899189:1-984 [pilon] Processing NODE_13795_length_243_cov_15.754098:1-243 [pilon] NODE_475_length_1941_cov_23.794505:1-1941 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 1015, Coverage: 57, minDepth: 14 [pilon] Confirmed 1583 of 1941 bases (81.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_475_length_1941_cov_23.794505:1-1941 [pilon] Processing NODE_13278_length_243_cov_20.377049:1-243 [pilon] NODE_8751_length_380_cov_15.988417:1-380 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 98, Coverage: 12, minDepth: 5 [pilon] Confirmed 273 of 380 bases (71.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8751_length_380_cov_15.988417:1-380 [pilon] Processing NODE_1201_length_1397_cov_16.555643:1-1397 [pilon] NODE_693_length_1709_cov_1.948992:1-1709 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 100, Coverage: 7, minDepth: 5 [pilon] Confirmed 1160 of 1709 bases (67.88%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_693_length_1709_cov_1.948992:1-1709 [pilon] Processing NODE_9777_length_335_cov_60.046729:1-335 [pilon] NODE_987_length_1504_cov_10.920463:1-1504 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 359, Coverage: 30, minDepth: 8 [pilon] Confirmed 1098 of 1504 bases (73.01%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_987_length_1504_cov_10.920463:1-1504 [pilon] Processing NODE_2786_length_911_cov_11.645570:1-911 [pilon] NODE_7245_length_457_cov_33.017857:1-457 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 254, Coverage: 41, minDepth: 10 [pilon] Confirmed 380 of 457 bases (83.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7245_length_457_cov_33.017857:1-457 [pilon] Processing NODE_6003_length_540_cov_25.983294:1-540 [pilon] NODE_12864_length_243_cov_24.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12864_length_243_cov_24.360656:1-243 [pilon] Processing NODE_8560_length_390_cov_21.230483:1-390 [pilon] NODE_6271_length_519_cov_37.062814:1-519 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 318, Coverage: 46, minDepth: 12 [pilon] Confirmed 455 of 519 bases (87.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6271_length_519_cov_37.062814:1-519 [pilon] Processing NODE_62_length_3391_cov_18.534251:1-3391 [pilon] NODE_985_length_1505_cov_17.910405:1-1505 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 528, Coverage: 29, minDepth: 7 [pilon] Confirmed 1366 of 1505 bases (90.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_985_length_1505_cov_17.910405:1-1505 [pilon] Processing NODE_1949_length_1098_cov_18.953941:1-1098 [pilon] NODE_10100_length_321_cov_19.520000:1-321 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 94, Coverage: 13, minDepth: 5 [pilon] Confirmed 274 of 321 bases (85.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10100_length_321_cov_19.520000:1-321 [pilon] Processing NODE_11900_length_249_cov_18.945312:1-249 [pilon] NODE_6231_length_522_cov_21.304239:1-522 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 212, Coverage: 19, minDepth: 5 [pilon] Confirmed 372 of 522 bases (71.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6231_length_522_cov_21.304239:1-522 [pilon] Processing NODE_11274_length_273_cov_12.342105:1-273 [pilon] NODE_9866_length_331_cov_14.500000:1-331 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 67, Coverage: 5, minDepth: 5 [pilon] Confirmed 152 of 331 bases (45.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9866_length_331_cov_14.500000:1-331 [pilon] Processing NODE_14707_length_243_cov_8.508197:1-243 [pilon] NODE_2199_length_1034_cov_3.634173:1-1034 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 94, Coverage: 12, minDepth: 5 [pilon] Confirmed 846 of 1034 bases (81.82%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2199_length_1034_cov_3.634173:1-1034 [pilon] Processing NODE_7983_length_419_cov_9.345638:1-419 [pilon] NODE_13045_length_243_cov_22.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13045_length_243_cov_22.475410:1-243 [pilon] Processing NODE_11355_length_270_cov_9.201342:1-270 [pilon] NODE_14157_length_243_cov_13.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14157_length_243_cov_13.032787:1-243 [pilon] Processing NODE_3186_length_834_cov_7.713885:1-834 [pilon] NODE_2835_length_904_cov_19.551724:1-904 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 379, Coverage: 24, minDepth: 6 [pilon] Confirmed 579 of 904 bases (64.05%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_10021_length_324_cov_23.822660:1-324 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 100, Coverage: 15, minDepth: 5 [pilon] Confirmed 267 of 324 bases (82.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2835_length_904_cov_19.551724:1-904 [pilon] Finished processing NODE_10021_length_324_cov_23.822660:1-324 [pilon] Processing NODE_11162_length_277_cov_9.743590:1-277 [pilon] Processing NODE_5511_length_576_cov_17.597802:1-576 [pilon] NODE_1158_length_1414_cov_24.521268:1-1414 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 754, Coverage: 56, minDepth: 14 [pilon] Confirmed 1121 of 1414 bases (79.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1158_length_1414_cov_24.521268:1-1414 [pilon] Processing NODE_9528_length_345_cov_13.272321:1-345 [pilon] NODE_1200_length_1398_cov_24.740016:1-1398 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 778, Coverage: 47, minDepth: 12 [pilon] Confirmed 1191 of 1398 bases (85.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1200_length_1398_cov_24.740016:1-1398 [pilon] Processing NODE_82_length_3160_cov_20.669299:1-3160 [pilon] NODE_8274_length_405_cov_23.137324:1-405 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 144, Coverage: 23, minDepth: 6 [pilon] Confirmed 309 of 405 bases (76.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8274_length_405_cov_23.137324:1-405 [pilon] Processing NODE_12599_length_243_cov_27.598361:1-243 [pilon] NODE_13142_length_243_cov_21.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13142_length_243_cov_21.606557:1-243 [pilon] Processing NODE_10113_length_321_cov_14.430000:1-321 [pilon] NODE_5811_length_554_cov_45.972286:1-554 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 451, Coverage: 65, minDepth: 16 [pilon] Confirmed 484 of 554 bases (87.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5811_length_554_cov_45.972286:1-554 [pilon] Processing NODE_3831_length_737_cov_1.459416:1-737 [pilon] NODE_7471_length_444_cov_23.368421:1-444 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 183, Coverage: 30, minDepth: 8 [pilon] Confirmed 359 of 444 bases (80.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7471_length_444_cov_23.368421:1-444 [pilon] Processing NODE_9152_length_360_cov_9.154812:1-360 [pilon] NODE_1417_length_1292_cov_21.009394:1-1292 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 605, Coverage: 41, minDepth: 10 [pilon] Confirmed 977 of 1292 bases (75.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_15097_length_223_cov_6.862745:1-223 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 51 of 223 bases (22.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15097_length_223_cov_6.862745:1-223 [pilon] Finished processing NODE_1417_length_1292_cov_21.009394:1-1292 [pilon] Processing NODE_4550_length_657_cov_12.108209:1-657 [pilon] Processing NODE_9773_length_336_cov_8.413953:1-336 [pilon] NODE_13795_length_243_cov_15.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13795_length_243_cov_15.754098:1-243 [pilon] Processing NODE_8936_length_369_cov_19.838710:1-369 [pilon] NODE_12394_length_243_cov_31.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12394_length_243_cov_31.188525:1-243 [pilon] Processing NODE_11678_length_258_cov_7.167883:1-258 [pilon] NODE_7253_length_457_cov_1.383929:1-457 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 174 of 457 bases (38.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7253_length_457_cov_1.383929:1-457 [pilon] Processing NODE_13215_length_243_cov_20.950820:1-243 [pilon] NODE_5314_length_591_cov_31.940426:1-591 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 333, Coverage: 49, minDepth: 12 [pilon] Confirmed 478 of 591 bases (80.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5314_length_591_cov_31.940426:1-591 [pilon] Processing NODE_13317_length_243_cov_20.098361:1-243 [pilon] NODE_6087_length_533_cov_4.742718:1-533 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 51, Coverage: 12, minDepth: 5 [pilon] Confirmed 398 of 533 bases (74.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6087_length_533_cov_4.742718:1-533 [pilon] Processing NODE_7151_length_462_cov_25.404692:1-462 [pilon] NODE_2786_length_911_cov_11.645570:1-911 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 253, Coverage: 24, minDepth: 6 [pilon] Confirmed 863 of 911 bases (94.73%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2786_length_911_cov_11.645570:1-911 [pilon] Processing NODE_1102_length_1440_cov_17.656558:1-1440 [pilon] NODE_15049_length_240_cov_120.428571:1-240 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 301, Coverage: 26, minDepth: 7 [pilon] Confirmed 221 of 240 bases (92.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15049_length_240_cov_120.428571:1-240 [pilon] Processing NODE_14105_length_243_cov_13.434426:1-243 [pilon] NODE_13278_length_243_cov_20.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13278_length_243_cov_20.377049:1-243 [pilon] Processing NODE_5144_length_606_cov_16.981443:1-606 [pilon] NODE_9777_length_335_cov_60.046729:1-335 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 303, Coverage: 32, minDepth: 8 [pilon] Confirmed 295 of 335 bases (88.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9777_length_335_cov_60.046729:1-335 [pilon] Processing NODE_13782_length_243_cov_15.803279:1-243 [pilon] NODE_1201_length_1397_cov_16.555643:1-1397 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 616, Coverage: 48, minDepth: 12 [pilon] Confirmed 1057 of 1397 bases (75.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1201_length_1397_cov_16.555643:1-1397 [pilon] Processing NODE_4917_length_625_cov_1.307540:1-625 [pilon] NODE_8560_length_390_cov_21.230483:1-390 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 135, Coverage: 23, minDepth: 6 [pilon] Confirmed 318 of 390 bases (81.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8560_length_390_cov_21.230483:1-390 [pilon] Processing NODE_3813_length_739_cov_15.292880:1-739 [pilon] NODE_6003_length_540_cov_25.983294:1-540 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 268, Coverage: 24, minDepth: 6 [pilon] Confirmed 298 of 540 bases (55.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6003_length_540_cov_25.983294:1-540 [pilon] Processing NODE_6074_length_534_cov_9.464891:1-534 [pilon] NODE_11900_length_249_cov_18.945312:1-249 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11900_length_249_cov_18.945312:1-249 [pilon] NODE_1949_length_1098_cov_18.953941:1-1098 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 448, Coverage: 42, minDepth: 11 [pilon] Confirmed 593 of 1098 bases (54.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_3874_length_731_cov_16.101639:1-731 [pilon] Finished processing NODE_1949_length_1098_cov_18.953941:1-1098 [pilon] Processing NODE_2271_length_1017_cov_18.614955:1-1017 [pilon] NODE_14707_length_243_cov_8.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14707_length_243_cov_8.508197:1-243 [pilon] Processing NODE_10072_length_322_cov_22.955224:1-322 [pilon] NODE_11274_length_273_cov_12.342105:1-273 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 44, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 273 bases (47.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11274_length_273_cov_12.342105:1-273 [pilon] Processing NODE_12799_length_243_cov_25.032787:1-243 [pilon] NODE_9152_length_360_cov_9.154812:1-360 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 54, Coverage: 4, minDepth: 5 [pilon] Confirmed 146 of 360 bases (40.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9152_length_360_cov_9.154812:1-360 [pilon] Processing NODE_6940_length_475_cov_3.155367:1-475 [pilon] NODE_7983_length_419_cov_9.345638:1-419 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 61, Coverage: 10, minDepth: 5 [pilon] Confirmed 324 of 419 bases (77.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7983_length_419_cov_9.345638:1-419 [pilon] Processing NODE_4534_length_658_cov_24.906890:1-658 [pilon] NODE_62_length_3391_cov_18.534251:1-3391 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 1691, Coverage: 41, minDepth: 10 [pilon] Confirmed 3053 of 3391 bases (90.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_62_length_3391_cov_18.534251:1-3391 [pilon] Processing NODE_11575_length_261_cov_18.978571:1-261 [pilon] NODE_11355_length_270_cov_9.201342:1-270 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 23, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 270 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11355_length_270_cov_9.201342:1-270 [pilon] Processing NODE_6191_length_525_cov_3.009901:1-525 [pilon] NODE_9528_length_345_cov_13.272321:1-345 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 61, Coverage: 4, minDepth: 5 [pilon] Confirmed 138 of 345 bases (40.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9528_length_345_cov_13.272321:1-345 [pilon] Processing NODE_2262_length_1019_cov_10.096882:1-1019 [pilon] NODE_11162_length_277_cov_9.743590:1-277 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 29, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 277 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11162_length_277_cov_9.743590:1-277 [pilon] Processing NODE_10287_length_314_cov_15.300518:1-314 [pilon] NODE_3186_length_834_cov_7.713885:1-834 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 132, Coverage: 20, minDepth: 5 [pilon] Confirmed 683 of 834 bases (81.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3186_length_834_cov_7.713885:1-834 [pilon] Processing NODE_1905_length_1111_cov_16.701010:1-1111 [pilon] NODE_5511_length_576_cov_17.597802:1-576 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 189, Coverage: 25, minDepth: 6 [pilon] Confirmed 455 of 576 bases (78.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5511_length_576_cov_17.597802:1-576 [pilon] Processing NODE_7133_length_464_cov_0.580175:1-464 [pilon] NODE_1102_length_1440_cov_17.656558:1-1440 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 671, Coverage: 48, minDepth: 12 [pilon] Confirmed 1098 of 1440 bases (76.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_10113_length_321_cov_14.430000:1-321 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 45, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 321 bases (39.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10113_length_321_cov_14.430000:1-321 [pilon] Finished processing NODE_1102_length_1440_cov_17.656558:1-1440 [pilon] Processing NODE_7382_length_449_cov_20.847561:1-449 [pilon] Processing NODE_11011_length_284_cov_5.723926:1-284 [pilon] NODE_3831_length_737_cov_1.459416:1-737 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 24, Coverage: 4, minDepth: 5 [pilon] Confirmed 222 of 737 bases (30.12%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3831_length_737_cov_1.459416:1-737 [pilon] Processing NODE_10660_length_300_cov_5.608939:1-300 [pilon] NODE_12599_length_243_cov_27.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12599_length_243_cov_27.598361:1-243 [pilon] Processing NODE_4046_length_711_cov_0.962712:1-711 [pilon] NODE_11678_length_258_cov_7.167883:1-258 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11678_length_258_cov_7.167883:1-258 [pilon] Processing NODE_9808_length_333_cov_31.160377:1-333 [pilon] NODE_9773_length_336_cov_8.413953:1-336 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 28, Coverage: 3, minDepth: 5 [pilon] Confirmed 121 of 336 bases (36.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9773_length_336_cov_8.413953:1-336 [pilon] Processing NODE_2515_length_964_cov_18.593120:1-964 [pilon] NODE_4550_length_657_cov_12.108209:1-657 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 142, Coverage: 14, minDepth: 5 [pilon] Confirmed 553 of 657 bases (84.17%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4550_length_657_cov_12.108209:1-657 [pilon] Processing NODE_5053_length_614_cov_42.868154:1-614 [pilon] NODE_82_length_3160_cov_20.669299:1-3160 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 1474, Coverage: 50, minDepth: 13 [pilon] Confirmed 2880 of 3160 bases (91.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_82_length_3160_cov_20.669299:1-3160 [pilon] Processing NODE_10671_length_299_cov_17.224719:1-299 [pilon] NODE_13215_length_243_cov_20.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13215_length_243_cov_20.950820:1-243 [pilon] Processing NODE_15183_length_168_cov_6.170213:1-168 [pilon] NODE_13317_length_243_cov_20.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13317_length_243_cov_20.098361:1-243 [pilon] Processing NODE_971_length_1513_cov_57.696121:1-1513 [pilon] NODE_8936_length_369_cov_19.838710:1-369 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 104, Coverage: 16, minDepth: 5 [pilon] Confirmed 307 of 369 bases (83.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8936_length_369_cov_19.838710:1-369 [pilon] Processing NODE_10253_length_315_cov_11.989691:1-315 [pilon] NODE_13782_length_243_cov_15.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13782_length_243_cov_15.803279:1-243 [pilon] Processing NODE_2913_length_890_cov_12.226268:1-890 [pilon] NODE_14105_length_243_cov_13.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14105_length_243_cov_13.434426:1-243 [pilon] Processing NODE_13739_length_243_cov_16.114754:1-243 [pilon] NODE_7151_length_462_cov_25.404692:1-462 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 194, Coverage: 28, minDepth: 7 [pilon] Confirmed 295 of 462 bases (63.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7151_length_462_cov_25.404692:1-462 [pilon] Processing NODE_4381_length_673_cov_2.742754:1-673 [pilon] NODE_5144_length_606_cov_16.981443:1-606 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 179, Coverage: 21, minDepth: 5 [pilon] Confirmed 487 of 606 bases (80.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5144_length_606_cov_16.981443:1-606 [pilon] Processing NODE_12635_length_243_cov_27.049180:1-243 [pilon] NODE_6074_length_534_cov_9.464891:1-534 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 89, Coverage: 8, minDepth: 5 [pilon] Confirmed 255 of 534 bases (47.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6074_length_534_cov_9.464891:1-534 [pilon] Processing NODE_6699_length_490_cov_19.972900:1-490 [pilon] NODE_3813_length_739_cov_15.292880:1-739 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 217, Coverage: 30, minDepth: 8 [pilon] Confirmed 558 of 739 bases (75.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3813_length_739_cov_15.292880:1-739 [pilon] Processing NODE_13879_length_243_cov_15.040984:1-243 [pilon] NODE_6940_length_475_cov_3.155367:1-475 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 27, Coverage: 7, minDepth: 5 [pilon] Confirmed 262 of 475 bases (55.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6940_length_475_cov_3.155367:1-475 [pilon] Processing NODE_13989_length_243_cov_14.237705:1-243 [pilon] NODE_4917_length_625_cov_1.307540:1-625 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 191 of 625 bases (30.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4917_length_625_cov_1.307540:1-625 [pilon] Processing NODE_7257_length_457_cov_0.377976:1-457 [pilon] NODE_12799_length_243_cov_25.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12799_length_243_cov_25.032787:1-243 [pilon] Processing NODE_6567_length_499_cov_1.351852:1-499 [pilon] NODE_3874_length_731_cov_16.101639:1-731 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 235, Coverage: 25, minDepth: 6 [pilon] Confirmed 608 of 731 bases (83.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3874_length_731_cov_16.101639:1-731 [pilon] Processing NODE_11442_length_265_cov_32.743056:1-265 [pilon] NODE_2271_length_1017_cov_18.614955:1-1017 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 398, Coverage: 32, minDepth: 8 [pilon] Confirmed 939 of 1017 bases (92.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2271_length_1017_cov_18.614955:1-1017 [pilon] Processing NODE_8911_length_371_cov_9.612000:1-371 [pilon] NODE_7382_length_449_cov_20.847561:1-449 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 150, Coverage: 31, minDepth: 8 [pilon] Confirmed 369 of 449 bases (82.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7382_length_449_cov_20.847561:1-449 [pilon] Processing NODE_13301_length_243_cov_20.229508:1-243 [pilon] NODE_10072_length_322_cov_22.955224:1-322 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 96, Coverage: 11, minDepth: 5 [pilon] Confirmed 217 of 322 bases (67.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10072_length_322_cov_22.955224:1-322 [pilon] Processing NODE_1069_length_1456_cov_17.871161:1-1456 [pilon] NODE_4534_length_658_cov_24.906890:1-658 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 437, Coverage: 60, minDepth: 15 [pilon] Confirmed 394 of 658 bases (59.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4534_length_658_cov_24.906890:1-658 [pilon] Processing NODE_12568_length_243_cov_28.065574:1-243 [pilon] NODE_11575_length_261_cov_18.978571:1-261 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 52, Coverage: 11, minDepth: 5 [pilon] Confirmed 218 of 261 bases (83.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11575_length_261_cov_18.978571:1-261 [pilon] Processing NODE_12608_length_243_cov_27.483607:1-243 [pilon] NODE_6191_length_525_cov_3.009901:1-525 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 306 of 525 bases (58.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6191_length_525_cov_3.009901:1-525 [pilon] Processing NODE_12878_length_243_cov_24.237705:1-243 [pilon] NODE_10287_length_314_cov_15.300518:1-314 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 49, Coverage: 2, minDepth: 5 [pilon] Confirmed 93 of 314 bases (29.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10287_length_314_cov_15.300518:1-314 [pilon] Processing NODE_6104_length_531_cov_35.331707:1-531 [pilon] NODE_11011_length_284_cov_5.723926:1-284 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 284 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11011_length_284_cov_5.723926:1-284 [pilon] NODE_2262_length_1019_cov_10.096882:1-1019 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 224, Coverage: 20, minDepth: 5 [pilon] Confirmed 909 of 1019 bases (89.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2262_length_1019_cov_10.096882:1-1019 [pilon] Processing NODE_8923_length_369_cov_52.020161:1-369 [pilon] NODE_7133_length_464_cov_0.580175:1-464 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 464 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7133_length_464_cov_0.580175:1-464 [pilon] Processing NODE_14307_length_243_cov_11.786885:1-243 [pilon] Processing NODE_6272_length_519_cov_34.891960:1-519 [pilon] NODE_1905_length_1111_cov_16.701010:1-1111 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 387, Coverage: 34, minDepth: 9 [pilon] Confirmed 1012 of 1111 bases (91.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1905_length_1111_cov_16.701010:1-1111 [pilon] Processing NODE_13282_length_243_cov_20.352459:1-243 [pilon] NODE_10660_length_300_cov_5.608939:1-300 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 29, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 300 bases (43.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10660_length_300_cov_5.608939:1-300 [pilon] Processing NODE_2547_length_957_cov_15.840909:1-957 [pilon] NODE_9808_length_333_cov_31.160377:1-333 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 124, Coverage: 5, minDepth: 5 [pilon] Confirmed 156 of 333 bases (46.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9808_length_333_cov_31.160377:1-333 [pilon] Processing NODE_12230_length_243_cov_35.393443:1-243 [pilon] NODE_15183_length_168_cov_6.170213:1-168 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 29, Coverage: 1, minDepth: 5 [pilon] Confirmed 26 of 168 bases (15.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15183_length_168_cov_6.170213:1-168 [pilon] Processing NODE_9705_length_338_cov_12.907834:1-338 [pilon] NODE_5053_length_614_cov_42.868154:1-614 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 490, Coverage: 67, minDepth: 17 [pilon] Confirmed 556 of 614 bases (90.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5053_length_614_cov_42.868154:1-614 [pilon] Processing NODE_240_length_2377_cov_3.861702:1-2377 [pilon] NODE_10671_length_299_cov_17.224719:1-299 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 50, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 299 bases (43.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10671_length_299_cov_17.224719:1-299 [pilon] Processing NODE_10611_length_300_cov_26.441341:1-300 [pilon] NODE_4046_length_711_cov_0.962712:1-711 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 296 of 711 bases (41.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4046_length_711_cov_0.962712:1-711 [pilon] Processing NODE_10176_length_318_cov_17.817259:1-318 [pilon] NODE_13989_length_243_cov_14.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13989_length_243_cov_14.237705:1-243 [pilon] Processing NODE_9284_length_354_cov_21.738197:1-354 [pilon] NODE_10253_length_315_cov_11.989691:1-315 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 62, Coverage: 5, minDepth: 5 [pilon] Confirmed 164 of 315 bases (52.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10253_length_315_cov_11.989691:1-315 [pilon] Processing NODE_1072_length_1455_cov_14.086957:1-1455 [pilon] NODE_2515_length_964_cov_18.593120:1-964 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 362, Coverage: 31, minDepth: 8 [pilon] Confirmed 693 of 964 bases (71.89%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2515_length_964_cov_18.593120:1-964 [pilon] Processing NODE_7979_length_419_cov_15.171141:1-419 [pilon] NODE_2913_length_890_cov_12.226268:1-890 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 252, Coverage: 14, minDepth: 5 [pilon] Confirmed 506 of 890 bases (56.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2913_length_890_cov_12.226268:1-890 [pilon] Processing NODE_11467_length_264_cov_22.398601:1-264 [pilon] NODE_12635_length_243_cov_27.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12635_length_243_cov_27.049180:1-243 [pilon] Processing NODE_11727_length_255_cov_23.470149:1-255 [pilon] NODE_13739_length_243_cov_16.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13739_length_243_cov_16.114754:1-243 [pilon] Processing NODE_3855_length_734_cov_1.249592:1-734 [pilon] NODE_4381_length_673_cov_2.742754:1-673 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 49, Coverage: 9, minDepth: 5 [pilon] Confirmed 479 of 673 bases (71.17%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4381_length_673_cov_2.742754:1-673 [pilon] Processing NODE_11115_length_279_cov_16.500000:1-279 [pilon] NODE_6567_length_499_cov_1.351852:1-499 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 499 bases (26.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6567_length_499_cov_1.351852:1-499 [pilon] Processing NODE_8147_length_411_cov_12.144828:1-411 [pilon] NODE_971_length_1513_cov_57.696121:1-1513 log: [pilon] frags shovill.bam: coverage 142 [pilon] Total Reads: 1838, Coverage: 142, minDepth: 36 [pilon] Confirmed 1444 of 1513 bases (95.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_971_length_1513_cov_57.696121:1-1513 [pilon] Processing NODE_10341_length_312_cov_11.743455:1-312 [pilon] NODE_13879_length_243_cov_15.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13879_length_243_cov_15.040984:1-243 [pilon] Processing NODE_3843_length_735_cov_12.838762:1-735 [pilon] NODE_6699_length_490_cov_19.972900:1-490 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 206, Coverage: 30, minDepth: 8 [pilon] Confirmed 381 of 490 bases (77.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6699_length_490_cov_19.972900:1-490 [pilon] Processing NODE_298_length_2243_cov_44.390198:1-2243 [pilon] NODE_7257_length_457_cov_0.377976:1-457 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 457 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7257_length_457_cov_0.377976:1-457 [pilon] Processing NODE_5654_length_566_cov_49.907865:1-566 [pilon] NODE_11442_length_265_cov_32.743056:1-265 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 107, Coverage: 6, minDepth: 5 [pilon] Confirmed 215 of 265 bases (81.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11442_length_265_cov_32.743056:1-265 [pilon] Processing NODE_5563_length_573_cov_14.303097:1-573 [pilon] NODE_8911_length_371_cov_9.612000:1-371 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 60, Coverage: 5, minDepth: 5 [pilon] Confirmed 141 of 371 bases (38.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8911_length_371_cov_9.612000:1-371 [pilon] Processing NODE_3062_length_861_cov_1.282432:1-861 [pilon] NODE_13301_length_243_cov_20.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13301_length_243_cov_20.229508:1-243 [pilon] Processing NODE_13581_length_243_cov_17.672131:1-243 [pilon] NODE_12568_length_243_cov_28.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12568_length_243_cov_28.065574:1-243 [pilon] Processing NODE_8640_length_386_cov_13.275472:1-386 [pilon] NODE_12608_length_243_cov_27.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12608_length_243_cov_27.483607:1-243 [pilon] Processing NODE_4831_length_632_cov_3.301370:1-632 [pilon] NODE_1069_length_1456_cov_17.871161:1-1456 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 548, Coverage: 40, minDepth: 10 [pilon] Confirmed 1338 of 1456 bases (91.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1069_length_1456_cov_17.871161:1-1456 [pilon] Processing NODE_15011_length_243_cov_5.311475:1-243 [pilon] NODE_9284_length_354_cov_21.738197:1-354 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 114, Coverage: 23, minDepth: 6 [pilon] Confirmed 331 of 354 bases (93.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9284_length_354_cov_21.738197:1-354 [pilon] Processing NODE_1290_length_1345_cov_15.834150:1-1345 [pilon] NODE_12878_length_243_cov_24.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12878_length_243_cov_24.237705:1-243 [pilon] Processing NODE_12051_length_245_cov_34.967742:1-245 [pilon] NODE_13282_length_243_cov_20.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13282_length_243_cov_20.352459:1-243 [pilon] Processing NODE_4403_length_671_cov_11.727273:1-671 [pilon] NODE_12230_length_243_cov_35.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_8923_length_369_cov_52.020161:1-369 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 280, Coverage: 50, minDepth: 13 [pilon] Confirmed 305 of 369 bases (82.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12230_length_243_cov_35.393443:1-243 [pilon] Finished processing NODE_8923_length_369_cov_52.020161:1-369 [pilon] Processing NODE_10728_length_297_cov_9.926136:1-297 [pilon] Processing NODE_11852_length_252_cov_6.923664:1-252 [pilon] NODE_6104_length_531_cov_35.331707:1-531 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 321, Coverage: 34, minDepth: 9 [pilon] Confirmed 341 of 531 bases (64.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6104_length_531_cov_35.331707:1-531 [pilon] Processing NODE_5235_length_598_cov_0.507338:1-598 [pilon] NODE_6272_length_519_cov_34.891960:1-519 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 317, Coverage: 46, minDepth: 12 [pilon] Confirmed 469 of 519 bases (90.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6272_length_519_cov_34.891960:1-519 [pilon] Processing NODE_962_length_1517_cov_29.771490:1-1517 [pilon] NODE_2547_length_957_cov_15.840909:1-957 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 318, Coverage: 36, minDepth: 9 [pilon] Confirmed 870 of 957 bases (90.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2547_length_957_cov_15.840909:1-957 [pilon] Processing NODE_1044_length_1471_cov_13.909630:1-1471 [pilon] NODE_8147_length_411_cov_12.144828:1-411 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 85, Coverage: 11, minDepth: 5 [pilon] Confirmed 277 of 411 bases (67.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8147_length_411_cov_12.144828:1-411 [pilon] Processing NODE_1604_length_1215_cov_35.643510:1-1215 [pilon] NODE_14307_length_243_cov_11.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14307_length_243_cov_11.786885:1-243 [pilon] Processing NODE_12395_length_243_cov_31.122951:1-243 [pilon] NODE_10611_length_300_cov_26.441341:1-300 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 99, Coverage: 7, minDepth: 5 [pilon] Confirmed 164 of 300 bases (54.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7979_length_419_cov_15.171141:1-419 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 100, Coverage: 12, minDepth: 5 [pilon] Confirmed 270 of 419 bases (64.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10611_length_300_cov_26.441341:1-300 [pilon] Processing NODE_3935_length_723_cov_2.023256:1-723 [pilon] Finished processing NODE_7979_length_419_cov_15.171141:1-419 [pilon] Processing NODE_5106_length_610_cov_1.801636:1-610 [pilon] NODE_9705_length_338_cov_12.907834:1-338 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 104, Coverage: 5, minDepth: 5 [pilon] Confirmed 164 of 338 bases (48.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9705_length_338_cov_12.907834:1-338 [pilon] Processing NODE_15066_length_237_cov_27.706897:1-237 [pilon] NODE_240_length_2377_cov_3.861702:1-2377 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 209, Coverage: 11, minDepth: 5 [pilon] Confirmed 1926 of 2377 bases (81.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_240_length_2377_cov_3.861702:1-2377 [pilon] Processing NODE_8496_length_394_cov_16.190476:1-394 [pilon] NODE_10176_length_318_cov_17.817259:1-318 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 92, Coverage: 15, minDepth: 5 [pilon] Confirmed 276 of 318 bases (86.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10176_length_318_cov_17.817259:1-318 [pilon] Processing NODE_3600_length_768_cov_24.360124:1-768 [pilon] NODE_11467_length_264_cov_22.398601:1-264 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 70, Coverage: 5, minDepth: 5 [pilon] Confirmed 182 of 264 bases (68.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11467_length_264_cov_22.398601:1-264 [pilon] Processing NODE_4166_length_697_cov_16.276042:1-697 [pilon] NODE_11727_length_255_cov_23.470149:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 75, Coverage: 4, minDepth: 5 [pilon] Confirmed 93 of 255 bases (36.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11727_length_255_cov_23.470149:1-255 [pilon] Processing NODE_3366_length_802_cov_39.961821:1-802 [pilon] NODE_1072_length_1455_cov_14.086957:1-1455 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 446, Coverage: 23, minDepth: 6 [pilon] Confirmed 1192 of 1455 bases (81.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1072_length_1455_cov_14.086957:1-1455 [pilon] Processing NODE_666_length_1731_cov_41.323602:1-1731 [pilon] NODE_3843_length_735_cov_12.838762:1-735 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 177, Coverage: 15, minDepth: 5 [pilon] Confirmed 578 of 735 bases (78.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3843_length_735_cov_12.838762:1-735 [pilon] Processing NODE_580_length_1828_cov_36.054482:1-1828 [pilon] NODE_3855_length_734_cov_1.249592:1-734 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 217 of 734 bases (29.56%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3855_length_734_cov_1.249592:1-734 [pilon] Processing NODE_10167_length_318_cov_22.076142:1-318 [pilon] NODE_11115_length_279_cov_16.500000:1-279 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 176 of 279 bases (63.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11115_length_279_cov_16.500000:1-279 [pilon] Processing NODE_12190_length_243_cov_37.131148:1-243 [pilon] NODE_10341_length_312_cov_11.743455:1-312 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 39, Coverage: 8, minDepth: 5 [pilon] Confirmed 251 of 312 bases (80.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10341_length_312_cov_11.743455:1-312 [pilon] Processing NODE_4282_length_683_cov_20.290036:1-683 [pilon] NODE_5654_length_566_cov_49.907865:1-566 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 456, Coverage: 66, minDepth: 17 [pilon] Confirmed 500 of 566 bases (88.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5654_length_566_cov_49.907865:1-566 [pilon] Processing NODE_13361_length_243_cov_19.729508:1-243 [pilon] NODE_1290_length_1345_cov_15.834150:1-1345 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 498, Coverage: 42, minDepth: 11 [pilon] Confirmed 944 of 1345 bases (70.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1290_length_1345_cov_15.834150:1-1345 [pilon] Processing NODE_2556_length_955_cov_46.398082:1-955 [pilon] NODE_5563_length_573_cov_14.303097:1-573 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 151, Coverage: 25, minDepth: 6 [pilon] Confirmed 463 of 573 bases (80.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5563_length_573_cov_14.303097:1-573 [pilon] Processing NODE_9731_length_336_cov_31.316279:1-336 [pilon] NODE_298_length_2243_cov_44.390198:1-2243 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 2271, Coverage: 91, minDepth: 23 [pilon] Confirmed 2062 of 2243 bases (91.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_298_length_2243_cov_44.390198:1-2243 [pilon] Processing NODE_11940_length_248_cov_13.874016:1-248 [pilon] NODE_13581_length_243_cov_17.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13581_length_243_cov_17.672131:1-243 [pilon] Processing NODE_12857_length_243_cov_24.467213:1-243 [pilon] NODE_3062_length_861_cov_1.282432:1-861 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 36, Coverage: 5, minDepth: 5 [pilon] Confirmed 441 of 861 bases (51.22%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3062_length_861_cov_1.282432:1-861 [pilon] Processing NODE_14694_length_243_cov_8.622951:1-243 [pilon] NODE_4831_length_632_cov_3.301370:1-632 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 55, Coverage: 10, minDepth: 5 [pilon] Confirmed 532 of 632 bases (84.18%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4831_length_632_cov_3.301370:1-632 [pilon] Processing NODE_9574_length_342_cov_27.859729:1-342 [pilon] NODE_15011_length_243_cov_5.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15011_length_243_cov_5.311475:1-243 [pilon] Processing NODE_13675_length_243_cov_16.762295:1-243 [pilon] NODE_8640_length_386_cov_13.275472:1-386 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 78, Coverage: 6, minDepth: 5 [pilon] Confirmed 204 of 386 bases (52.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8640_length_386_cov_13.275472:1-386 [pilon] Processing NODE_3511_length_781_cov_49.093939:1-781 [pilon] NODE_12051_length_245_cov_34.967742:1-245 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 105, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 245 bases (53.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12051_length_245_cov_34.967742:1-245 [pilon] Processing NODE_5473_length_579_cov_19.231441:1-579 [pilon] NODE_1604_length_1215_cov_35.643510:1-1215 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 879, Coverage: 81, minDepth: 20 [pilon] Confirmed 1115 of 1215 bases (91.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1604_length_1215_cov_35.643510:1-1215 [pilon] Processing NODE_99_length_3008_cov_11.984413:1-3008 [pilon] NODE_10728_length_297_cov_9.926136:1-297 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 40, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10728_length_297_cov_9.926136:1-297 [pilon] Processing NODE_600_length_1811_cov_14.694083:1-1811 [pilon] NODE_4403_length_671_cov_11.727273:1-671 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 174, Coverage: 17, minDepth: 5 [pilon] Confirmed 594 of 671 bases (88.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4403_length_671_cov_11.727273:1-671 [pilon] Processing NODE_7208_length_459_cov_33.772189:1-459 [pilon] NODE_11852_length_252_cov_6.923664:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11852_length_252_cov_6.923664:1-252 [pilon] Processing NODE_10474_length_306_cov_9.362162:1-306 [pilon] NODE_5235_length_598_cov_0.507338:1-598 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 8, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 598 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5235_length_598_cov_0.507338:1-598 [pilon] Processing NODE_15007_length_243_cov_5.344262:1-243 [pilon] NODE_962_length_1517_cov_29.771490:1-1517 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 878, Coverage: 45, minDepth: 11 [pilon] Confirmed 1151 of 1517 bases (75.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_962_length_1517_cov_29.771490:1-1517 [pilon] Processing NODE_14481_length_243_cov_10.368852:1-243 [pilon] NODE_15066_length_237_cov_27.706897:1-237 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 52, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 237 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15066_length_237_cov_27.706897:1-237 [pilon] Processing NODE_1197_length_1399_cov_18.615806:1-1399 [pilon] NODE_1044_length_1471_cov_13.909630:1-1471 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 441, Coverage: 35, minDepth: 9 [pilon] Confirmed 1233 of 1471 bases (83.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1044_length_1471_cov_13.909630:1-1471 [pilon] Processing NODE_4576_length_655_cov_19.024345:1-655 [pilon] NODE_3935_length_723_cov_2.023256:1-723 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 38, Coverage: 6, minDepth: 5 [pilon] Confirmed 452 of 723 bases (62.52%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3935_length_723_cov_2.023256:1-723 [pilon] Processing NODE_7847_length_425_cov_9.851974:1-425 [pilon] NODE_12395_length_243_cov_31.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12395_length_243_cov_31.122951:1-243 [pilon] Processing NODE_13867_length_243_cov_15.155738:1-243 [pilon] NODE_5106_length_610_cov_1.801636:1-610 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 452 of 610 bases (74.10%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5106_length_610_cov_1.801636:1-610 [pilon] Processing NODE_5814_length_554_cov_19.103926:1-554 [pilon] NODE_8496_length_394_cov_16.190476:1-394 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 105, Coverage: 11, minDepth: 5 [pilon] Confirmed 232 of 394 bases (58.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8496_length_394_cov_16.190476:1-394 [pilon] Processing NODE_14664_length_243_cov_8.901639:1-243 [pilon] NODE_10167_length_318_cov_22.076142:1-318 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 66, Coverage: 4, minDepth: 5 [pilon] Confirmed 143 of 318 bases (44.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10167_length_318_cov_22.076142:1-318 [pilon] Processing NODE_8771_length_378_cov_29.140078:1-378 [pilon] NODE_3600_length_768_cov_24.360124:1-768 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 371, Coverage: 40, minDepth: 10 [pilon] Confirmed 575 of 768 bases (74.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3600_length_768_cov_24.360124:1-768 [pilon] Processing NODE_11819_length_252_cov_17.587786:1-252 [pilon] NODE_12190_length_243_cov_37.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12190_length_243_cov_37.131148:1-243 [pilon] Processing NODE_10154_length_319_cov_7.424242:1-319 [pilon] NODE_4166_length_697_cov_16.276042:1-697 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 226, Coverage: 31, minDepth: 8 [pilon] Confirmed 576 of 697 bases (82.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4166_length_697_cov_16.276042:1-697 [pilon] Processing NODE_7296_length_454_cov_16.000000:1-454 [pilon] NODE_3366_length_802_cov_39.961821:1-802 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 633, Coverage: 76, minDepth: 19 [pilon] Confirmed 742 of 802 bases (92.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3366_length_802_cov_39.961821:1-802 [pilon] Processing NODE_8617_length_387_cov_22.526316:1-387 [pilon] NODE_2556_length_955_cov_46.398082:1-955 log: [pilon] frags shovill.bam: coverage 103 [pilon] Total Reads: 898, Coverage: 103, minDepth: 26 [pilon] Confirmed 755 of 955 bases (79.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2556_length_955_cov_46.398082:1-955 [pilon] Processing NODE_8338_length_403_cov_0.929078:1-403 [pilon] NODE_4282_length_683_cov_20.290036:1-683 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 267, Coverage: 43, minDepth: 11 [pilon] Confirmed 587 of 683 bases (85.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4282_length_683_cov_20.290036:1-683 [pilon] Processing NODE_5533_length_575_cov_10.962555:1-575 [pilon] NODE_666_length_1731_cov_41.323602:1-1731 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 1625, Coverage: 75, minDepth: 19 [pilon] Confirmed 1523 of 1731 bases (87.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_666_length_1731_cov_41.323602:1-1731 [pilon] Processing NODE_2066_length_1068_cov_27.198522:1-1068 [pilon] NODE_580_length_1828_cov_36.054482:1-1828 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 1456, Coverage: 67, minDepth: 17 [pilon] Confirmed 1571 of 1828 bases (85.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_580_length_1828_cov_36.054482:1-1828 [pilon] Processing NODE_12718_length_243_cov_26.000000:1-243 [pilon] NODE_13361_length_243_cov_19.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13361_length_243_cov_19.729508:1-243 [pilon] Processing NODE_7185_length_460_cov_38.920354:1-460 [pilon] NODE_9731_length_336_cov_31.316279:1-336 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 144, Coverage: 11, minDepth: 5 [pilon] Confirmed 246 of 336 bases (73.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9731_length_336_cov_31.316279:1-336 [pilon] Processing NODE_4545_length_657_cov_28.365672:1-657 [pilon] NODE_11940_length_248_cov_13.874016:1-248 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 44, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 248 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11940_length_248_cov_13.874016:1-248 [pilon] Processing NODE_10541_length_303_cov_18.686813:1-303 [pilon] NODE_14694_length_243_cov_8.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14694_length_243_cov_8.622951:1-243 [pilon] Processing NODE_12778_length_243_cov_25.270492:1-243 [pilon] NODE_12857_length_243_cov_24.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12857_length_243_cov_24.467213:1-243 [pilon] Processing NODE_5816_length_554_cov_16.893764:1-554 [pilon] NODE_10474_length_306_cov_9.362162:1-306 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 33, Coverage: 4, minDepth: 5 [pilon] Confirmed 131 of 306 bases (42.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10474_length_306_cov_9.362162:1-306 [pilon] Processing NODE_9560_length_343_cov_19.396396:1-343 [pilon] NODE_9574_length_342_cov_27.859729:1-342 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 125, Coverage: 5, minDepth: 5 [pilon] Confirmed 135 of 342 bases (39.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9574_length_342_cov_27.859729:1-342 [pilon] Processing NODE_5327_length_590_cov_50.407249:1-590 [pilon] NODE_5473_length_579_cov_19.231441:1-579 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 194, Coverage: 29, minDepth: 7 [pilon] Confirmed 447 of 579 bases (77.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5473_length_579_cov_19.231441:1-579 [pilon] Processing NODE_15095_length_224_cov_7.533981:1-224 [pilon] NODE_3511_length_781_cov_49.093939:1-781 log: [pilon] frags shovill.bam: coverage 101 [pilon] Total Reads: 736, Coverage: 101, minDepth: 25 [pilon] Confirmed 691 of 781 bases (88.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3511_length_781_cov_49.093939:1-781 [pilon] Processing NODE_2473_length_972_cov_4.616921:1-972 [pilon] NODE_13675_length_243_cov_16.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13675_length_243_cov_16.762295:1-243 [pilon] Processing NODE_306_length_2234_cov_2.259347:1-2234 [pilon] NODE_99_length_3008_cov_11.984413:1-3008 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 870, Coverage: 35, minDepth: 9 [pilon] Confirmed 2523 of 3008 bases (83.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_99_length_3008_cov_11.984413:1-3008 [pilon] Processing NODE_14994_length_243_cov_5.516393:1-243 [pilon] NODE_15007_length_243_cov_5.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15007_length_243_cov_5.344262:1-243 [pilon] Processing NODE_4731_length_641_cov_1.334615:1-641 [pilon] NODE_8338_length_403_cov_0.929078:1-403 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 9, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 403 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8338_length_403_cov_0.929078:1-403 [pilon] Processing NODE_7623_length_436_cov_19.288889:1-436 [pilon] NODE_7208_length_459_cov_33.772189:1-459 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 230, Coverage: 32, minDepth: 8 [pilon] Confirmed 358 of 459 bases (78.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7208_length_459_cov_33.772189:1-459 [pilon] Processing NODE_7250_length_457_cov_13.363095:1-457 [pilon] NODE_600_length_1811_cov_14.694083:1-1811 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 580, Coverage: 40, minDepth: 10 [pilon] Confirmed 1606 of 1811 bases (88.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_600_length_1811_cov_14.694083:1-1811 [pilon] Processing NODE_10603_length_300_cov_36.541899:1-300 [pilon] NODE_7847_length_425_cov_9.851974:1-425 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 72, Coverage: 5, minDepth: 5 [pilon] Confirmed 181 of 425 bases (42.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7847_length_425_cov_9.851974:1-425 [pilon] Processing NODE_14948_length_243_cov_6.139344:1-243 [pilon] NODE_1197_length_1399_cov_18.615806:1-1399 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 565, Coverage: 34, minDepth: 9 [pilon] Confirmed 1032 of 1399 bases (73.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1197_length_1399_cov_18.615806:1-1399 [pilon] Processing NODE_5527_length_575_cov_21.270925:1-575 [pilon] NODE_13867_length_243_cov_15.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13867_length_243_cov_15.155738:1-243 [pilon] Processing NODE_2750_length_917_cov_52.645729:1-917 [pilon] NODE_14481_length_243_cov_10.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14481_length_243_cov_10.368852:1-243 [pilon] Processing NODE_14346_length_243_cov_11.483607:1-243 [pilon] NODE_4576_length_655_cov_19.024345:1-655 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 248, Coverage: 27, minDepth: 7 [pilon] Confirmed 471 of 655 bases (71.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4576_length_655_cov_19.024345:1-655 [pilon] Processing NODE_9271_length_354_cov_37.845494:1-354 [pilon] NODE_5814_length_554_cov_19.103926:1-554 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 181, Coverage: 27, minDepth: 7 [pilon] Confirmed 404 of 554 bases (72.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5814_length_554_cov_19.103926:1-554 [pilon] Processing NODE_5445_length_581_cov_2.476087:1-581 [pilon] NODE_10154_length_319_cov_7.424242:1-319 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 319 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10154_length_319_cov_7.424242:1-319 [pilon] Processing NODE_4319_length_678_cov_34.244165:1-678 [pilon] NODE_8771_length_378_cov_29.140078:1-378 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 161, Coverage: 22, minDepth: 6 [pilon] Confirmed 281 of 378 bases (74.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8771_length_378_cov_29.140078:1-378 [pilon] Processing NODE_2892_length_894_cov_7.001294:1-894 [pilon] NODE_8617_length_387_cov_22.526316:1-387 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 136, Coverage: 27, minDepth: 7 [pilon] Confirmed 348 of 387 bases (89.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8617_length_387_cov_22.526316:1-387 [pilon] Processing NODE_3945_length_721_cov_27.163333:1-721 [pilon] NODE_14664_length_243_cov_8.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14664_length_243_cov_8.901639:1-243 [pilon] Processing NODE_6099_length_532_cov_6.754258:1-532 [pilon] NODE_11819_length_252_cov_17.587786:1-252 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 58, Coverage: 5, minDepth: 5 [pilon] Confirmed 135 of 252 bases (53.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11819_length_252_cov_17.587786:1-252 [pilon] Processing NODE_13616_length_243_cov_17.344262:1-243 [pilon] NODE_7296_length_454_cov_16.000000:1-454 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 119, Coverage: 10, minDepth: 5 [pilon] Confirmed 250 of 454 bases (55.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7296_length_454_cov_16.000000:1-454 [pilon] Processing NODE_14926_length_243_cov_6.442623:1-243 [pilon] NODE_2066_length_1068_cov_27.198522:1-1068 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 574, Coverage: 53, minDepth: 13 [pilon] Confirmed 1006 of 1068 bases (94.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2066_length_1068_cov_27.198522:1-1068 [pilon] Processing NODE_9467_length_347_cov_58.451327:1-347 [pilon] NODE_5533_length_575_cov_10.962555:1-575 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 136, Coverage: 27, minDepth: 7 [pilon] Confirmed 501 of 575 bases (87.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5533_length_575_cov_10.962555:1-575 [pilon] Processing NODE_3531_length_779_cov_24.332827:1-779 [pilon] NODE_5816_length_554_cov_16.893764:1-554 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 194, Coverage: 32, minDepth: 8 [pilon] Confirmed 426 of 554 bases (76.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5816_length_554_cov_16.893764:1-554 [pilon] Processing NODE_8518_length_393_cov_13.161765:1-393 [pilon] NODE_12718_length_243_cov_26.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12718_length_243_cov_26.000000:1-243 [pilon] Processing NODE_3887_length_730_cov_0.766831:1-730 [pilon] NODE_4545_length_657_cov_28.365672:1-657 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 324, Coverage: 49, minDepth: 12 [pilon] Confirmed 550 of 657 bases (83.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4545_length_657_cov_28.365672:1-657 [pilon] Processing NODE_2768_length_914_cov_18.820933:1-914 [pilon] NODE_7185_length_460_cov_38.920354:1-460 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 292, Coverage: 50, minDepth: 13 [pilon] Confirmed 351 of 460 bases (76.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7185_length_460_cov_38.920354:1-460 [pilon] Processing NODE_6185_length_525_cov_34.230198:1-525 [pilon] NODE_14346_length_243_cov_11.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14346_length_243_cov_11.483607:1-243 [pilon] Processing NODE_13463_length_243_cov_18.745902:1-243 [pilon] NODE_306_length_2234_cov_2.259347:1-2234 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 140, Coverage: 8, minDepth: 5 [pilon] Confirmed 1379 of 2234 bases (61.73%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_306_length_2234_cov_2.259347:1-2234 [pilon] Processing NODE_4052_length_710_cov_20.047538:1-710 [pilon] NODE_9560_length_343_cov_19.396396:1-343 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 97, Coverage: 9, minDepth: 5 [pilon] Confirmed 213 of 343 bases (62.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9560_length_343_cov_19.396396:1-343 [pilon] Processing NODE_14288_length_243_cov_11.934426:1-243 [pilon] NODE_4731_length_641_cov_1.334615:1-641 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 220 of 641 bases (34.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4731_length_641_cov_1.334615:1-641 [pilon] Processing NODE_6266_length_520_cov_2.556391:1-520 [pilon] NODE_7623_length_436_cov_19.288889:1-436 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 145, Coverage: 12, minDepth: 5 [pilon] Confirmed 259 of 436 bases (59.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7623_length_436_cov_19.288889:1-436 [pilon] Processing NODE_3537_length_779_cov_0.806991:1-779 [pilon] NODE_12778_length_243_cov_25.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12778_length_243_cov_25.270492:1-243 [pilon] Processing NODE_15268_length_122_cov_1.000000:1-122 [pilon] NODE_10541_length_303_cov_18.686813:1-303 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 173 of 303 bases (57.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10541_length_303_cov_18.686813:1-303 [pilon] Processing NODE_9977_length_327_cov_12.106796:1-327 [pilon] NODE_2473_length_972_cov_4.616921:1-972 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 96, Coverage: 12, minDepth: 5 [pilon] Confirmed 842 of 972 bases (86.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2473_length_972_cov_4.616921:1-972 [pilon] Processing NODE_2140_length_1049_cov_8.535560:1-1049 [pilon] NODE_13616_length_243_cov_17.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13616_length_243_cov_17.344262:1-243 [pilon] Processing NODE_8117_length_412_cov_7.429553:1-412 [pilon] NODE_4319_length_678_cov_34.244165:1-678 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 406, Coverage: 62, minDepth: 16 [pilon] Confirmed 517 of 678 bases (76.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4319_length_678_cov_34.244165:1-678 [pilon] Processing NODE_12714_length_243_cov_26.057377:1-243 [pilon] NODE_14948_length_243_cov_6.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14948_length_243_cov_6.139344:1-243 [pilon] Processing NODE_12822_length_243_cov_24.819672:1-243 [pilon] NODE_5445_length_581_cov_2.476087:1-581 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 301 of 581 bases (51.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5445_length_581_cov_2.476087:1-581 [pilon] Processing NODE_6045_length_537_cov_2.274038:1-537 [pilon] NODE_14994_length_243_cov_5.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14994_length_243_cov_5.516393:1-243 [pilon] Processing NODE_8313_length_404_cov_2.141343:1-404 [pilon] NODE_6099_length_532_cov_6.754258:1-532 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 81, Coverage: 2, minDepth: 5 [pilon] Confirmed 97 of 532 bases (18.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6099_length_532_cov_6.754258:1-532 [pilon] Processing NODE_13528_length_243_cov_18.073770:1-243 [pilon] NODE_10603_length_300_cov_36.541899:1-300 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 127, Coverage: 12, minDepth: 5 [pilon] Confirmed 188 of 300 bases (62.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10603_length_300_cov_36.541899:1-300 [pilon] Processing NODE_5935_length_545_cov_34.870283:1-545 [pilon] NODE_15095_length_224_cov_7.533981:1-224 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 224 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15095_length_224_cov_7.533981:1-224 [pilon] Processing NODE_5781_length_557_cov_5.128440:1-557 [pilon] NODE_7250_length_457_cov_13.363095:1-457 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 98, Coverage: 6, minDepth: 5 [pilon] Confirmed 256 of 457 bases (56.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7250_length_457_cov_13.363095:1-457 [pilon] Processing NODE_5216_length_600_cov_17.066806:1-600 [pilon] NODE_5527_length_575_cov_21.270925:1-575 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 225, Coverage: 30, minDepth: 8 [pilon] Confirmed 499 of 575 bases (86.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5527_length_575_cov_21.270925:1-575 [pilon] Processing NODE_6927_length_476_cov_2.042254:1-476 [pilon] NODE_2750_length_917_cov_52.645729:1-917 log: [pilon] frags shovill.bam: coverage 119 [pilon] Total Reads: 961, Coverage: 119, minDepth: 30 [pilon] Confirmed 772 of 917 bases (84.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2750_length_917_cov_52.645729:1-917 [pilon] NODE_5327_length_590_cov_50.407249:1-590 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 521, Coverage: 90, minDepth: 23 [pilon] Confirmed 499 of 590 bases (84.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_11303_length_272_cov_8.774834:1-272 [pilon] Finished processing NODE_5327_length_590_cov_50.407249:1-590 [pilon] Processing NODE_7748_length_430_cov_0.711974:1-430 [pilon] NODE_9271_length_354_cov_37.845494:1-354 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 189, Coverage: 29, minDepth: 7 [pilon] Confirmed 301 of 354 bases (85.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9271_length_354_cov_37.845494:1-354 [pilon] Processing NODE_10041_length_324_cov_11.591133:1-324 [pilon] NODE_2892_length_894_cov_7.001294:1-894 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 128, Coverage: 18, minDepth: 5 [pilon] Confirmed 767 of 894 bases (85.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2892_length_894_cov_7.001294:1-894 [pilon] Processing NODE_14935_length_243_cov_6.336066:1-243 [pilon] NODE_3945_length_721_cov_27.163333:1-721 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 383, Coverage: 45, minDepth: 11 [pilon] Confirmed 655 of 721 bases (90.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3945_length_721_cov_27.163333:1-721 [pilon] Processing NODE_5193_length_602_cov_20.960499:1-602 [pilon] NODE_9467_length_347_cov_58.451327:1-347 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 304, Coverage: 52, minDepth: 13 [pilon] Confirmed 313 of 347 bases (90.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9467_length_347_cov_58.451327:1-347 [pilon] Processing NODE_11420_length_267_cov_11.027397:1-267 [pilon] NODE_14926_length_243_cov_6.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14926_length_243_cov_6.442623:1-243 [pilon] Processing NODE_7346_length_450_cov_75.006079:1-450 [pilon] NODE_13463_length_243_cov_18.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13463_length_243_cov_18.745902:1-243 [pilon] Processing NODE_9183_length_358_cov_5.265823:1-358 [pilon] NODE_3887_length_730_cov_0.766831:1-730 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 226 of 730 bases (30.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3887_length_730_cov_0.766831:1-730 [pilon] Processing NODE_14272_length_243_cov_12.057377:1-243 [pilon] NODE_8518_length_393_cov_13.161765:1-393 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 84, Coverage: 14, minDepth: 5 [pilon] Confirmed 295 of 393 bases (75.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8518_length_393_cov_13.161765:1-393 [pilon] Processing NODE_3626_length_764_cov_35.171073:1-764 [pilon] NODE_3531_length_779_cov_24.332827:1-779 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 349, Coverage: 39, minDepth: 10 [pilon] Confirmed 614 of 779 bases (78.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3531_length_779_cov_24.332827:1-779 [pilon] Processing NODE_1501_length_1258_cov_2.265611:1-1258 [pilon] NODE_6185_length_525_cov_34.230198:1-525 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 320, Coverage: 58, minDepth: 15 [pilon] Confirmed 395 of 525 bases (75.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6185_length_525_cov_34.230198:1-525 [pilon] Processing NODE_4038_length_711_cov_22.722034:1-711 [pilon] NODE_9977_length_327_cov_12.106796:1-327 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 48, Coverage: 6, minDepth: 5 [pilon] Confirmed 172 of 327 bases (52.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9977_length_327_cov_12.106796:1-327 [pilon] Processing NODE_5115_length_608_cov_39.308008:1-608 [pilon] NODE_2768_length_914_cov_18.820933:1-914 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 344, Coverage: 35, minDepth: 9 [pilon] Confirmed 707 of 914 bases (77.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2768_length_914_cov_18.820933:1-914 [pilon] Processing NODE_1687_length_1187_cov_2.838649:1-1187 [pilon] NODE_14288_length_243_cov_11.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14288_length_243_cov_11.934426:1-243 [pilon] Processing NODE_14839_length_243_cov_7.352459:1-243 [pilon] NODE_3537_length_779_cov_0.806991:1-779 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 19, Coverage: 3, minDepth: 5 [pilon] Confirmed 131 of 779 bases (16.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3537_length_779_cov_0.806991:1-779 [pilon] Processing NODE_9740_length_336_cov_23.297674:1-336 [pilon] NODE_6266_length_520_cov_2.556391:1-520 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 30, Coverage: 7, minDepth: 5 [pilon] Confirmed 375 of 520 bases (72.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6266_length_520_cov_2.556391:1-520 [pilon] Processing NODE_6811_length_482_cov_34.770083:1-482 [pilon] NODE_4052_length_710_cov_20.047538:1-710 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 283, Coverage: 40, minDepth: 10 [pilon] Confirmed 531 of 710 bases (74.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4052_length_710_cov_20.047538:1-710 [pilon] Processing NODE_2043_length_1074_cov_13.589717:1-1074 [pilon] NODE_15268_length_122_cov_1.000000:1-122 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 122 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15268_length_122_cov_1.000000:1-122 [pilon] Processing NODE_3709_length_753_cov_17.140823:1-753 [pilon] NODE_6045_length_537_cov_2.274038:1-537 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 264 of 537 bases (49.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6045_length_537_cov_2.274038:1-537 [pilon] Processing NODE_2752_length_917_cov_22.118090:1-917 [pilon] NODE_5781_length_557_cov_5.128440:1-557 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 82, Coverage: 3, minDepth: 5 [pilon] Confirmed 136 of 557 bases (24.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5781_length_557_cov_5.128440:1-557 [pilon] Processing NODE_13145_length_243_cov_21.549180:1-243 [pilon] NODE_12714_length_243_cov_26.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12714_length_243_cov_26.057377:1-243 [pilon] Processing NODE_15114_length_214_cov_1.838710:1-214 [pilon] NODE_8117_length_412_cov_7.429553:1-412 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 54, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 412 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8117_length_412_cov_7.429553:1-412 [pilon] Processing NODE_14651_length_243_cov_9.000000:1-243 [pilon] NODE_12822_length_243_cov_24.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_8313_length_404_cov_2.141343:1-404 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 259 of 404 bases (64.11%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12822_length_243_cov_24.819672:1-243 [pilon] Finished processing NODE_8313_length_404_cov_2.141343:1-404 [pilon] Processing NODE_993_length_1499_cov_22.760522:1-1499 [pilon] Processing NODE_10864_length_289_cov_32.880952:1-289 [pilon] NODE_2140_length_1049_cov_8.535560:1-1049 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 217, Coverage: 18, minDepth: 5 [pilon] Confirmed 1013 of 1049 bases (96.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2140_length_1049_cov_8.535560:1-1049 [pilon] Processing NODE_2895_length_894_cov_1.516171:1-894 [pilon] NODE_5935_length_545_cov_34.870283:1-545 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 336, Coverage: 50, minDepth: 13 [pilon] Confirmed 467 of 545 bases (85.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5935_length_545_cov_34.870283:1-545 [pilon] Processing NODE_11951_length_247_cov_14.904762:1-247 [pilon] NODE_9183_length_358_cov_5.265823:1-358 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 33, Coverage: 5, minDepth: 5 [pilon] Confirmed 157 of 358 bases (43.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9183_length_358_cov_5.265823:1-358 [pilon] Processing NODE_1126_length_1427_cov_1.483155:1-1427 [pilon] NODE_13528_length_243_cov_18.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13528_length_243_cov_18.073770:1-243 [pilon] Processing NODE_1293_length_1344_cov_1.952576:1-1344 [pilon] NODE_11303_length_272_cov_8.774834:1-272 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 272 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11303_length_272_cov_8.774834:1-272 [pilon] Processing NODE_5135_length_607_cov_1.989712:1-607 [pilon] NODE_5216_length_600_cov_17.066806:1-600 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 183, Coverage: 22, minDepth: 6 [pilon] Confirmed 456 of 600 bases (76.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5216_length_600_cov_17.066806:1-600 [pilon] Processing NODE_1414_length_1293_cov_2.084471:1-1293 [pilon] NODE_7748_length_430_cov_0.711974:1-430 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 45 of 430 bases (10.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_6927_length_476_cov_2.042254:1-476 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 213 of 476 bases (44.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6927_length_476_cov_2.042254:1-476 [pilon] Finished processing NODE_7748_length_430_cov_0.711974:1-430 [pilon] Processing NODE_7105_length_465_cov_12.066860:1-465 [pilon] Processing NODE_13322_length_243_cov_20.073770:1-243 [pilon] NODE_14935_length_243_cov_6.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14935_length_243_cov_6.336066:1-243 [pilon] Processing NODE_13669_length_243_cov_16.803279:1-243 [pilon] NODE_10041_length_324_cov_11.591133:1-324 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 53, Coverage: 12, minDepth: 5 [pilon] Confirmed 259 of 324 bases (79.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10041_length_324_cov_11.591133:1-324 [pilon] Processing NODE_4689_length_644_cov_8.122371:1-644 [pilon] NODE_5193_length_602_cov_20.960499:1-602 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 224, Coverage: 32, minDepth: 8 [pilon] Confirmed 406 of 602 bases (67.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5193_length_602_cov_20.960499:1-602 [pilon] Processing NODE_3766_length_745_cov_26.866987:1-745 [pilon] NODE_7346_length_450_cov_75.006079:1-450 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 540, Coverage: 91, minDepth: 23 [pilon] Confirmed 399 of 450 bases (88.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7346_length_450_cov_75.006079:1-450 [pilon] Processing NODE_12160_length_243_cov_38.795082:1-243 [pilon] NODE_11420_length_267_cov_11.027397:1-267 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11420_length_267_cov_11.027397:1-267 [pilon] Processing NODE_6684_length_492_cov_2.097035:1-492 [pilon] NODE_5115_length_608_cov_39.308008:1-608 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 413, Coverage: 66, minDepth: 17 [pilon] Confirmed 513 of 608 bases (84.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5115_length_608_cov_39.308008:1-608 [pilon] Processing NODE_2626_length_942_cov_1.444580:1-942 [pilon] NODE_14272_length_243_cov_12.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14272_length_243_cov_12.057377:1-243 [pilon] Processing NODE_9570_length_342_cov_30.511312:1-342 [pilon] NODE_3626_length_764_cov_35.171073:1-764 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 517, Coverage: 63, minDepth: 16 [pilon] Confirmed 721 of 764 bases (94.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3626_length_764_cov_35.171073:1-764 [pilon] Processing NODE_9181_length_358_cov_7.687764:1-358 [pilon] NODE_1501_length_1258_cov_2.265611:1-1258 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 78, Coverage: 8, minDepth: 5 [pilon] Confirmed 708 of 1258 bases (56.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1501_length_1258_cov_2.265611:1-1258 [pilon] Processing NODE_7713_length_432_cov_12.141479:1-432 [pilon] NODE_4038_length_711_cov_22.722034:1-711 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 348, Coverage: 27, minDepth: 7 [pilon] Confirmed 575 of 711 bases (80.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4038_length_711_cov_22.722034:1-711 [pilon] Processing NODE_4700_length_643_cov_15.528736:1-643 [pilon] NODE_1126_length_1427_cov_1.483155:1-1427 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 66, Coverage: 6, minDepth: 5 [pilon] Confirmed 949 of 1427 bases (66.50%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1126_length_1427_cov_1.483155:1-1427 [pilon] Processing NODE_8057_length_415_cov_10.051020:1-415 [pilon] NODE_1687_length_1187_cov_2.838649:1-1187 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 76, Coverage: 8, minDepth: 5 [pilon] Confirmed 864 of 1187 bases (72.79%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1687_length_1187_cov_2.838649:1-1187 [pilon] Processing NODE_8945_length_369_cov_13.919355:1-369 [pilon] NODE_9740_length_336_cov_23.297674:1-336 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 107, Coverage: 5, minDepth: 5 [pilon] Confirmed 133 of 336 bases (39.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9740_length_336_cov_23.297674:1-336 [pilon] Processing NODE_8408_length_399_cov_17.068345:1-399 [pilon] NODE_14839_length_243_cov_7.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14839_length_243_cov_7.352459:1-243 [pilon] Processing NODE_12411_length_243_cov_30.762295:1-243 [pilon] NODE_6811_length_482_cov_34.770083:1-482 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 275, Coverage: 46, minDepth: 12 [pilon] Confirmed 376 of 482 bases (78.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6811_length_482_cov_34.770083:1-482 [pilon] Processing NODE_10730_length_297_cov_9.045455:1-297 [pilon] NODE_2895_length_894_cov_1.516171:1-894 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 36, Coverage: 5, minDepth: 5 [pilon] Confirmed 503 of 894 bases (56.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2895_length_894_cov_1.516171:1-894 [pilon] Processing NODE_15145_length_194_cov_28.123288:1-194 [pilon] NODE_13145_length_243_cov_21.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13145_length_243_cov_21.549180:1-243 [pilon] Processing NODE_15165_length_180_cov_5.847458:1-180 [pilon] NODE_2043_length_1074_cov_13.589717:1-1074 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 311, Coverage: 25, minDepth: 6 [pilon] Confirmed 952 of 1074 bases (88.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2043_length_1074_cov_13.589717:1-1074 [pilon] Processing NODE_9934_length_328_cov_21.758454:1-328 [pilon] NODE_2752_length_917_cov_22.118090:1-917 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 427, Coverage: 47, minDepth: 12 [pilon] Confirmed 724 of 917 bases (78.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2752_length_917_cov_22.118090:1-917 [pilon] Processing NODE_5048_length_615_cov_5.052632:1-615 [pilon] NODE_15114_length_214_cov_1.838710:1-214 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 214 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15114_length_214_cov_1.838710:1-214 [pilon] Processing NODE_7841_length_425_cov_17.000000:1-425 [pilon] NODE_3709_length_753_cov_17.140823:1-753 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 247, Coverage: 33, minDepth: 8 [pilon] Confirmed 596 of 753 bases (79.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3709_length_753_cov_17.140823:1-753 [pilon] Processing NODE_9433_length_348_cov_25.916300:1-348 [pilon] NODE_13322_length_243_cov_20.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13322_length_243_cov_20.073770:1-243 [pilon] Processing NODE_5536_length_575_cov_2.207048:1-575 [pilon] NODE_14651_length_243_cov_9.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14651_length_243_cov_9.000000:1-243 [pilon] Processing NODE_730_length_1685_cov_11.605499:1-1685 [pilon] NODE_5135_length_607_cov_1.989712:1-607 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 349 of 607 bases (57.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5135_length_607_cov_1.989712:1-607 [pilon] Processing NODE_10099_length_321_cov_19.655000:1-321 [pilon] NODE_7105_length_465_cov_12.066860:1-465 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 98, Coverage: 9, minDepth: 5 [pilon] Confirmed 257 of 465 bases (55.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7105_length_465_cov_12.066860:1-465 [pilon] Processing NODE_2149_length_1046_cov_33.762162:1-1046 [pilon] NODE_11951_length_247_cov_14.904762:1-247 log: [pilon] NODE_10864_length_289_cov_32.880952:1-289 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 131, Coverage: 5, minDepth: 5 [pilon] Confirmed 192 of 289 bases (66.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10864_length_289_cov_32.880952:1-289 [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 43, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 247 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11951_length_247_cov_14.904762:1-247 [pilon] Processing NODE_7729_length_431_cov_18.987097:1-431 [pilon] NODE_13669_length_243_cov_16.803279:1-243 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 46, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_10666_length_299_cov_27.466292:1-299 [pilon] Finished processing NODE_13669_length_243_cov_16.803279:1-243 [pilon] Processing NODE_9996_length_326_cov_7.029268:1-326 [pilon] NODE_2626_length_942_cov_1.444580:1-942 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 40, Coverage: 6, minDepth: 5 [pilon] Confirmed 399 of 942 bases (42.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2626_length_942_cov_1.444580:1-942 [pilon] Processing NODE_14936_length_243_cov_6.327869:1-243 [pilon] NODE_1293_length_1344_cov_1.952576:1-1344 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 73, Coverage: 7, minDepth: 5 [pilon] Confirmed 831 of 1344 bases (61.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1293_length_1344_cov_1.952576:1-1344 [pilon] Processing NODE_1441_length_1284_cov_32.703353:1-1284 [pilon] NODE_1414_length_1293_cov_2.084471:1-1293 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 752 of 1293 bases (58.16%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1414_length_1293_cov_2.084471:1-1293 [pilon] Processing NODE_12850_length_243_cov_24.524590:1-243 [pilon] NODE_993_length_1499_cov_22.760522:1-1499 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 753, Coverage: 34, minDepth: 9 [pilon] Confirmed 1443 of 1499 bases (96.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_993_length_1499_cov_22.760522:1-1499 [pilon] Processing NODE_8569_length_390_cov_11.728625:1-390 [pilon] NODE_4689_length_644_cov_8.122371:1-644 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 115, Coverage: 9, minDepth: 5 [pilon] Confirmed 349 of 644 bases (54.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4689_length_644_cov_8.122371:1-644 [pilon] Processing NODE_5947_length_544_cov_51.515366:1-544 [pilon] NODE_3766_length_745_cov_26.866987:1-745 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 383, Coverage: 36, minDepth: 9 [pilon] Confirmed 484 of 745 bases (64.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3766_length_745_cov_26.866987:1-745 [pilon] Processing NODE_9195_length_357_cov_27.733051:1-357 [pilon] NODE_12160_length_243_cov_38.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12160_length_243_cov_38.795082:1-243 [pilon] Processing NODE_3369_length_802_cov_13.105727:1-802 [pilon] NODE_6684_length_492_cov_2.097035:1-492 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 147 of 492 bases (29.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6684_length_492_cov_2.097035:1-492 [pilon] Processing NODE_10053_length_323_cov_21.841584:1-323 [pilon] NODE_9570_length_342_cov_30.511312:1-342 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 131, Coverage: 6, minDepth: 5 [pilon] Confirmed 148 of 342 bases (43.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9570_length_342_cov_30.511312:1-342 [pilon] Processing NODE_5476_length_579_cov_14.056769:1-579 [pilon] NODE_9181_length_358_cov_7.687764:1-358 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 358 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9181_length_358_cov_7.687764:1-358 [pilon] Processing NODE_1205_length_1393_cov_9.579403:1-1393 [pilon] NODE_8057_length_415_cov_10.051020:1-415 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 55, Coverage: 8, minDepth: 5 [pilon] Confirmed 207 of 415 bases (49.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8057_length_415_cov_10.051020:1-415 [pilon] Processing NODE_11404_length_267_cov_17.335616:1-267 [pilon] NODE_7713_length_432_cov_12.141479:1-432 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 83, Coverage: 17, minDepth: 5 [pilon] Confirmed 272 of 432 bases (62.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7713_length_432_cov_12.141479:1-432 [pilon] Processing NODE_8998_length_366_cov_35.224490:1-366 [pilon] NODE_14936_length_243_cov_6.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14936_length_243_cov_6.327869:1-243 [pilon] Processing NODE_3052_length_862_cov_9.364372:1-862 [pilon] NODE_8945_length_369_cov_13.919355:1-369 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 87, Coverage: 9, minDepth: 5 [pilon] Confirmed 238 of 369 bases (64.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8945_length_369_cov_13.919355:1-369 [pilon] Processing NODE_10725_length_297_cov_11.215909:1-297 [pilon] NODE_4700_length_643_cov_15.528736:1-643 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 191, Coverage: 21, minDepth: 5 [pilon] Confirmed 536 of 643 bases (83.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4700_length_643_cov_15.528736:1-643 [pilon] Processing NODE_6712_length_489_cov_28.489130:1-489 [pilon] NODE_8408_length_399_cov_17.068345:1-399 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 103, Coverage: 16, minDepth: 5 [pilon] Confirmed 294 of 399 bases (73.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8408_length_399_cov_17.068345:1-399 [pilon] Processing NODE_14585_length_243_cov_9.549180:1-243 [pilon] NODE_12411_length_243_cov_30.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12411_length_243_cov_30.762295:1-243 [pilon] Processing NODE_13567_length_243_cov_17.754098:1-243 [pilon] NODE_15145_length_194_cov_28.123288:1-194 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 194 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15145_length_194_cov_28.123288:1-194 [pilon] Processing NODE_10239_length_315_cov_21.515464:1-315 [pilon] NODE_10730_length_297_cov_9.045455:1-297 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 30, Coverage: 3, minDepth: 5 [pilon] Confirmed 111 of 297 bases (37.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10730_length_297_cov_9.045455:1-297 [pilon] Processing NODE_193_length_2532_cov_24.176690:1-2532 [pilon] NODE_5048_length_615_cov_5.052632:1-615 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 68, Coverage: 14, minDepth: 5 [pilon] Confirmed 483 of 615 bases (78.54%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5048_length_615_cov_5.052632:1-615 [pilon] Processing NODE_5861_length_551_cov_0.948837:1-551 [pilon] NODE_15165_length_180_cov_5.847458:1-180 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 180 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15165_length_180_cov_5.847458:1-180 [pilon] Processing NODE_5280_length_594_cov_17.805497:1-594 [pilon] NODE_7841_length_425_cov_17.000000:1-425 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 136, Coverage: 11, minDepth: 5 [pilon] Confirmed 289 of 425 bases (68.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7841_length_425_cov_17.000000:1-425 [pilon] Processing NODE_849_length_1598_cov_35.360190:1-1598 [pilon] NODE_9433_length_348_cov_25.916300:1-348 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 130, Coverage: 3, minDepth: 5 [pilon] Confirmed 119 of 348 bases (34.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9433_length_348_cov_25.916300:1-348 [pilon] Processing NODE_6470_length_505_cov_51.341146:1-505 [pilon] NODE_9996_length_326_cov_7.029268:1-326 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 40, Coverage: 4, minDepth: 5 [pilon] Confirmed 97 of 326 bases (29.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9996_length_326_cov_7.029268:1-326 [pilon] Processing NODE_12013_length_246_cov_14.728000:1-246 [pilon] NODE_10666_length_299_cov_27.466292:1-299 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 93, Coverage: 4, minDepth: 5 [pilon] Confirmed 154 of 299 bases (51.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10666_length_299_cov_27.466292:1-299 [pilon] NODE_9934_length_328_cov_21.758454:1-328 log: [pilon] Processing NODE_6771_length_485_cov_3.016484:1-485 [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 75, Coverage: 3, minDepth: 5 [pilon] Confirmed 105 of 328 bases (32.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9934_length_328_cov_21.758454:1-328 [pilon] Processing NODE_12103_length_243_cov_51.491803:1-243 [pilon] NODE_5536_length_575_cov_2.207048:1-575 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 27, Coverage: 6, minDepth: 5 [pilon] Confirmed 258 of 575 bases (44.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5536_length_575_cov_2.207048:1-575 [pilon] Processing NODE_5365_length_587_cov_9.708155:1-587 [pilon] NODE_12850_length_243_cov_24.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12850_length_243_cov_24.524590:1-243 [pilon] Processing NODE_11249_length_273_cov_24.375000:1-273 [pilon] NODE_10099_length_321_cov_19.655000:1-321 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 90, Coverage: 11, minDepth: 5 [pilon] Confirmed 230 of 321 bases (71.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10099_length_321_cov_19.655000:1-321 [pilon] Processing NODE_11101_length_279_cov_25.582278:1-279 [pilon] NODE_7729_length_431_cov_18.987097:1-431 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 139, Coverage: 24, minDepth: 6 [pilon] Confirmed 368 of 431 bases (85.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7729_length_431_cov_18.987097:1-431 [pilon] Processing NODE_1325_length_1331_cov_37.225620:1-1331 [pilon] NODE_8569_length_390_cov_11.728625:1-390 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 92, Coverage: 3, minDepth: 5 [pilon] Confirmed 117 of 390 bases (30.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8569_length_390_cov_11.728625:1-390 [pilon] Processing NODE_2963_length_880_cov_21.194993:1-880 [pilon] NODE_2149_length_1046_cov_33.762162:1-1046 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 670, Coverage: 73, minDepth: 18 [pilon] Confirmed 892 of 1046 bases (85.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2149_length_1046_cov_33.762162:1-1046 [pilon] Processing NODE_9096_length_362_cov_4.626556:1-362 [pilon] NODE_3369_length_802_cov_13.105727:1-802 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 223, Coverage: 22, minDepth: 6 [pilon] Confirmed 629 of 802 bases (78.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3369_length_802_cov_13.105727:1-802 [pilon] Processing NODE_2399_length_990_cov_27.869965:1-990 [pilon] NODE_11404_length_267_cov_17.335616:1-267 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 47, Coverage: 3, minDepth: 5 [pilon] Confirmed 57 of 267 bases (21.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11404_length_267_cov_17.335616:1-267 [pilon] Processing NODE_12884_length_243_cov_24.204918:1-243 [pilon] NODE_5947_length_544_cov_51.515366:1-544 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 523, Coverage: 77, minDepth: 19 [pilon] Confirmed 456 of 544 bases (83.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5947_length_544_cov_51.515366:1-544 [pilon] Processing NODE_11994_length_246_cov_20.184000:1-246 [pilon] NODE_1441_length_1284_cov_32.703353:1-1284 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 1019, Coverage: 77, minDepth: 19 [pilon] Confirmed 1080 of 1284 bases (84.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1441_length_1284_cov_32.703353:1-1284 [pilon] Processing NODE_12698_length_243_cov_26.245902:1-243 [pilon] NODE_730_length_1685_cov_11.605499:1-1685 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 445, Coverage: 27, minDepth: 7 [pilon] Confirmed 1587 of 1685 bases (94.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_730_length_1685_cov_11.605499:1-1685 [pilon] Processing NODE_14293_length_243_cov_11.901639:1-243 [pilon] NODE_9195_length_357_cov_27.733051:1-357 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 158, Coverage: 17, minDepth: 5 [pilon] Confirmed 257 of 357 bases (71.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9195_length_357_cov_27.733051:1-357 [pilon] Processing NODE_9653_length_339_cov_23.142202:1-339 [pilon] NODE_10053_length_323_cov_21.841584:1-323 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 83, Coverage: 8, minDepth: 5 [pilon] Confirmed 170 of 323 bases (52.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10053_length_323_cov_21.841584:1-323 [pilon] Processing NODE_14051_length_243_cov_13.819672:1-243 [pilon] NODE_1205_length_1393_cov_9.579403:1-1393 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 331, Coverage: 28, minDepth: 7 [pilon] Confirmed 1128 of 1393 bases (80.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1205_length_1393_cov_9.579403:1-1393 [pilon] Processing NODE_2930_length_885_cov_31.098168:1-885 [pilon] NODE_5476_length_579_cov_14.056769:1-579 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 130, Coverage: 20, minDepth: 5 [pilon] Confirmed 400 of 579 bases (69.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5476_length_579_cov_14.056769:1-579 [pilon] Processing NODE_13594_length_243_cov_17.565574:1-243 [pilon] NODE_3052_length_862_cov_9.364372:1-862 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 197, Coverage: 25, minDepth: 6 [pilon] Confirmed 703 of 862 bases (81.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3052_length_862_cov_9.364372:1-862 [pilon] Processing NODE_8305_length_404_cov_19.939929:1-404 [pilon] NODE_8998_length_366_cov_35.224490:1-366 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 196, Coverage: 40, minDepth: 10 [pilon] Confirmed 320 of 366 bases (87.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8998_length_366_cov_35.224490:1-366 [pilon] Processing NODE_108_length_2939_cov_13.002129:1-2939 [pilon] NODE_14585_length_243_cov_9.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14585_length_243_cov_9.549180:1-243 [pilon] Processing NODE_6476_length_505_cov_8.239583:1-505 [pilon] NODE_10725_length_297_cov_11.215909:1-297 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 44, Coverage: 2, minDepth: 5 [pilon] Confirmed 12 of 297 bases (4.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10725_length_297_cov_11.215909:1-297 [pilon] Processing NODE_6117_length_530_cov_61.611247:1-530 [pilon] NODE_6712_length_489_cov_28.489130:1-489 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 285, Coverage: 32, minDepth: 8 [pilon] Confirmed 355 of 489 bases (72.60%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6712_length_489_cov_28.489130:1-489 [pilon] Processing NODE_3195_length_833_cov_30.832865:1-833 [pilon] NODE_12884_length_243_cov_24.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12884_length_243_cov_24.204918:1-243 [pilon] Processing NODE_14771_length_243_cov_7.967213:1-243 [pilon] NODE_10239_length_315_cov_21.515464:1-315 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 93, Coverage: 17, minDepth: 5 [pilon] Confirmed 281 of 315 bases (89.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10239_length_315_cov_21.515464:1-315 [pilon] Processing NODE_7058_length_467_cov_36.398844:1-467 [pilon] NODE_13567_length_243_cov_17.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13567_length_243_cov_17.754098:1-243 [pilon] Processing NODE_12531_length_243_cov_28.622951:1-243 [pilon] NODE_5280_length_594_cov_17.805497:1-594 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 165, Coverage: 20, minDepth: 5 [pilon] Confirmed 448 of 594 bases (75.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5280_length_594_cov_17.805497:1-594 [pilon] Processing NODE_3414_length_797_cov_3.789941:1-797 [pilon] NODE_5861_length_551_cov_0.948837:1-551 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 209 of 551 bases (37.93%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12103_length_243_cov_51.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 124, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5861_length_551_cov_0.948837:1-551 [pilon] Finished processing NODE_12103_length_243_cov_51.491803:1-243 [pilon] Processing NODE_1734_length_1169_cov_2.709924:1-1169 [pilon] Processing NODE_7753_length_429_cov_23.740260:1-429 [pilon] NODE_11249_length_273_cov_24.375000:1-273 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 75, Coverage: 7, minDepth: 5 [pilon] Confirmed 196 of 273 bases (71.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11249_length_273_cov_24.375000:1-273 [pilon] Processing NODE_12925_length_243_cov_23.762295:1-243 [pilon] NODE_12013_length_246_cov_14.728000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 43, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12013_length_246_cov_14.728000:1-246 [pilon] Processing NODE_6296_length_518_cov_23.090680:1-518 [pilon] NODE_193_length_2532_cov_24.176690:1-2532 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 1444, Coverage: 45, minDepth: 11 [pilon] Confirmed 2133 of 2532 bases (84.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_193_length_2532_cov_24.176690:1-2532 [pilon] Processing NODE_11800_length_252_cov_31.366412:1-252 [pilon] NODE_6470_length_505_cov_51.341146:1-505 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 455, Coverage: 84, minDepth: 21 [pilon] Confirmed 453 of 505 bases (89.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6470_length_505_cov_51.341146:1-505 [pilon] Processing NODE_12605_length_243_cov_27.508197:1-243 [pilon] NODE_11101_length_279_cov_25.582278:1-279 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 82, Coverage: 5, minDepth: 5 [pilon] Confirmed 180 of 279 bases (64.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11101_length_279_cov_25.582278:1-279 [pilon] Processing NODE_11513_length_263_cov_23.619718:1-263 [pilon] NODE_5365_length_587_cov_9.708155:1-587 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 103, Coverage: 23, minDepth: 6 [pilon] Confirmed 499 of 587 bases (85.01%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5365_length_587_cov_9.708155:1-587 [pilon] Processing NODE_7516_length_442_cov_25.975078:1-442 [pilon] NODE_6771_length_485_cov_3.016484:1-485 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 34, Coverage: 8, minDepth: 5 [pilon] Confirmed 378 of 485 bases (77.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6771_length_485_cov_3.016484:1-485 [pilon] Processing NODE_2546_length_957_cov_18.159091:1-957 [pilon] NODE_8305_length_404_cov_19.939929:1-404 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 120, Coverage: 7, minDepth: 5 [pilon] Confirmed 200 of 404 bases (49.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8305_length_404_cov_19.939929:1-404 [pilon] Processing NODE_14695_length_243_cov_8.622951:1-243 [pilon] NODE_2399_length_990_cov_27.869965:1-990 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 672, Coverage: 43, minDepth: 11 [pilon] Confirmed 734 of 990 bases (74.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2399_length_990_cov_27.869965:1-990 [pilon] Processing NODE_2125_length_1052_cov_30.818475:1-1052 [pilon] NODE_9096_length_362_cov_4.626556:1-362 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 43, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 362 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9096_length_362_cov_4.626556:1-362 [pilon] Processing NODE_4079_length_707_cov_24.313993:1-707 [pilon] NODE_2963_length_880_cov_21.194993:1-880 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 511, Coverage: 65, minDepth: 16 [pilon] Confirmed 683 of 880 bases (77.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2963_length_880_cov_21.194993:1-880 [pilon] Processing NODE_6570_length_499_cov_0.878307:1-499 [pilon] NODE_1325_length_1331_cov_37.225620:1-1331 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 1012, Coverage: 85, minDepth: 21 [pilon] Confirmed 1032 of 1331 bases (77.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1325_length_1331_cov_37.225620:1-1331 [pilon] Processing NODE_12774_length_243_cov_25.311475:1-243 [pilon] NODE_12698_length_243_cov_26.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12698_length_243_cov_26.245902:1-243 [pilon] Processing NODE_11370_length_269_cov_6.398649:1-269 [pilon] NODE_11994_length_246_cov_20.184000:1-246 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 57, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 246 bases (52.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11994_length_246_cov_20.184000:1-246 [pilon] Processing NODE_7593_length_438_cov_13.107256:1-438 [pilon] NODE_849_length_1598_cov_35.360190:1-1598 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 1204, Coverage: 85, minDepth: 21 [pilon] Confirmed 1382 of 1598 bases (86.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_849_length_1598_cov_35.360190:1-1598 [pilon] Processing NODE_12385_length_243_cov_31.344262:1-243 [pilon] NODE_14293_length_243_cov_11.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14293_length_243_cov_11.901639:1-243 [pilon] Processing NODE_18_length_5299_cov_2.793936:1-5299 [pilon] NODE_9653_length_339_cov_23.142202:1-339 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 108, Coverage: 4, minDepth: 5 [pilon] Confirmed 144 of 339 bases (42.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9653_length_339_cov_23.142202:1-339 [pilon] Processing NODE_6169_length_527_cov_6.600985:1-527 [pilon] NODE_14051_length_243_cov_13.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14051_length_243_cov_13.819672:1-243 [pilon] Processing NODE_14172_length_243_cov_12.893443:1-243 [pilon] NODE_2930_length_885_cov_31.098168:1-885 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 532, Coverage: 61, minDepth: 15 [pilon] Confirmed 852 of 885 bases (96.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2930_length_885_cov_31.098168:1-885 [pilon] Processing NODE_9984_length_326_cov_44.585366:1-326 [pilon] NODE_13594_length_243_cov_17.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13594_length_243_cov_17.565574:1-243 [pilon] Processing NODE_3617_length_766_cov_30.217054:1-766 [pilon] NODE_14771_length_243_cov_7.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14771_length_243_cov_7.967213:1-243 [pilon] Processing NODE_4528_length_659_cov_6.286245:1-659 [pilon] NODE_108_length_2939_cov_13.002129:1-2939 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 877, Coverage: 38, minDepth: 10 [pilon] Confirmed 2235 of 2939 bases (76.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_108_length_2939_cov_13.002129:1-2939 [pilon] Processing NODE_1878_length_1120_cov_3.629630:1-1120 [pilon] NODE_6476_length_505_cov_8.239583:1-505 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 96, Coverage: 7, minDepth: 5 [pilon] Confirmed 287 of 505 bases (56.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6476_length_505_cov_8.239583:1-505 [pilon] Processing NODE_5097_length_610_cov_42.323108:1-610 [pilon] NODE_14695_length_243_cov_8.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14695_length_243_cov_8.622951:1-243 [pilon] Processing NODE_4661_length_647_cov_17.471483:1-647 [pilon] NODE_7058_length_467_cov_36.398844:1-467 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 282, Coverage: 49, minDepth: 12 [pilon] Confirmed 370 of 467 bases (79.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7058_length_467_cov_36.398844:1-467 [pilon] Processing NODE_6443_length_507_cov_21.049223:1-507 [pilon] NODE_6117_length_530_cov_61.611247:1-530 log: [pilon] frags shovill.bam: coverage 101 [pilon] Total Reads: 583, Coverage: 101, minDepth: 25 [pilon] Confirmed 450 of 530 bases (84.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6117_length_530_cov_61.611247:1-530 [pilon] Processing NODE_12104_length_243_cov_51.090164:1-243 [pilon] NODE_12531_length_243_cov_28.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 81, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12531_length_243_cov_28.622951:1-243 [pilon] Processing NODE_2841_length_903_cov_33.134271:1-903 [pilon] NODE_3195_length_833_cov_30.832865:1-833 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 499, Coverage: 56, minDepth: 14 [pilon] Confirmed 763 of 833 bases (91.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3195_length_833_cov_30.832865:1-833 [pilon] Processing NODE_4007_length_715_cov_2.870370:1-715 [pilon] NODE_7753_length_429_cov_23.740260:1-429 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 163, Coverage: 12, minDepth: 5 [pilon] Confirmed 245 of 429 bases (57.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7753_length_429_cov_23.740260:1-429 [pilon] Processing NODE_8992_length_367_cov_11.715447:1-367 [pilon] NODE_11800_length_252_cov_31.366412:1-252 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 91, Coverage: 3, minDepth: 5 [pilon] Confirmed 116 of 252 bases (46.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11800_length_252_cov_31.366412:1-252 [pilon] Processing NODE_14138_length_243_cov_13.213115:1-243 [pilon] NODE_1734_length_1169_cov_2.709924:1-1169 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 66, Coverage: 7, minDepth: 5 [pilon] Confirmed 836 of 1169 bases (71.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1734_length_1169_cov_2.709924:1-1169 [pilon] Processing NODE_4078_length_708_cov_1.713799:1-708 [pilon] NODE_6296_length_518_cov_23.090680:1-518 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 205, Coverage: 25, minDepth: 6 [pilon] Confirmed 421 of 518 bases (81.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6296_length_518_cov_23.090680:1-518 [pilon] Processing NODE_6012_length_540_cov_5.727924:1-540 [pilon] NODE_12925_length_243_cov_23.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12925_length_243_cov_23.762295:1-243 [pilon] Processing NODE_6720_length_489_cov_10.967391:1-489 [pilon] NODE_3414_length_797_cov_3.789941:1-797 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 79, Coverage: 12, minDepth: 5 [pilon] Confirmed 627 of 797 bases (78.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3414_length_797_cov_3.789941:1-797 [pilon] Processing NODE_10854_length_290_cov_20.970414:1-290 [pilon] NODE_12605_length_243_cov_27.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12605_length_243_cov_27.508197:1-243 [pilon] Processing NODE_11664_length_258_cov_10.963504:1-258 [pilon] NODE_7516_length_442_cov_25.975078:1-442 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 181, Coverage: 32, minDepth: 8 [pilon] Confirmed 392 of 442 bases (88.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7516_length_442_cov_25.975078:1-442 [pilon] Processing NODE_5126_length_608_cov_2.669405:1-608 [pilon] NODE_12774_length_243_cov_25.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12774_length_243_cov_25.311475:1-243 [pilon] Processing NODE_7496_length_443_cov_23.375776:1-443 [pilon] NODE_11370_length_269_cov_6.398649:1-269 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 16, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 269 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11370_length_269_cov_6.398649:1-269 [pilon] Processing NODE_5062_length_613_cov_57.225610:1-613 [pilon] NODE_12385_length_243_cov_31.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 79, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12385_length_243_cov_31.344262:1-243 [pilon] Processing NODE_229_length_2409_cov_19.367133:1-2409 [pilon] NODE_11513_length_263_cov_23.619718:1-263 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 61, Coverage: 5, minDepth: 5 [pilon] Confirmed 188 of 263 bases (71.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11513_length_263_cov_23.619718:1-263 [pilon] Processing NODE_214_length_2460_cov_11.129115:1-2460 [pilon] NODE_7593_length_438_cov_13.107256:1-438 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 97, Coverage: 7, minDepth: 5 [pilon] Confirmed 214 of 438 bases (48.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7593_length_438_cov_13.107256:1-438 [pilon] Processing NODE_10664_length_299_cov_28.264045:1-299 [pilon] NODE_2546_length_957_cov_18.159091:1-957 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 384, Coverage: 41, minDepth: 10 [pilon] Confirmed 910 of 957 bases (95.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2546_length_957_cov_18.159091:1-957 [pilon] Processing NODE_11773_length_254_cov_30.308271:1-254 [pilon] NODE_6570_length_499_cov_0.878307:1-499 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 19 of 499 bases (3.81%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6570_length_499_cov_0.878307:1-499 [pilon] Processing NODE_13289_length_243_cov_20.295082:1-243 [pilon] NODE_4079_length_707_cov_24.313993:1-707 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 335, Coverage: 53, minDepth: 13 [pilon] Confirmed 574 of 707 bases (81.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4079_length_707_cov_24.313993:1-707 [pilon] Processing NODE_10321_length_312_cov_21.465969:1-312 [pilon] NODE_2125_length_1052_cov_30.818475:1-1052 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 710, Coverage: 46, minDepth: 12 [pilon] Confirmed 794 of 1052 bases (75.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2125_length_1052_cov_30.818475:1-1052 [pilon] Processing NODE_12347_length_243_cov_32.155738:1-243 [pilon] NODE_4528_length_659_cov_6.286245:1-659 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 116, Coverage: 8, minDepth: 5 [pilon] Confirmed 575 of 659 bases (87.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4528_length_659_cov_6.286245:1-659 [pilon] NODE_6169_length_527_cov_6.600985:1-527 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 84, Coverage: 8, minDepth: 5 [pilon] Confirmed 298 of 527 bases (56.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6169_length_527_cov_6.600985:1-527 [pilon] Processing NODE_2400_length_990_cov_21.706559:1-990 [pilon] NODE_18_length_5299_cov_2.793936:1-5299 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 401, Coverage: 10, minDepth: 5 [pilon] Confirmed 4367 of 5299 bases (82.41%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_18_length_5299_cov_2.793936:1-5299 [pilon] Processing NODE_10294_length_313_cov_30.291667:1-313 [pilon] NODE_14172_length_243_cov_12.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14172_length_243_cov_12.893443:1-243 [pilon] Processing NODE_5694_length_564_cov_1.205418:1-564 [pilon] NODE_9984_length_326_cov_44.585366:1-326 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 237, Coverage: 41, minDepth: 10 [pilon] Confirmed 296 of 326 bases (90.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9984_length_326_cov_44.585366:1-326 [pilon] Processing NODE_7174_length_461_cov_10.905882:1-461 [pilon] NODE_3617_length_766_cov_30.217054:1-766 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 485, Coverage: 54, minDepth: 14 [pilon] Confirmed 703 of 766 bases (91.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3617_length_766_cov_30.217054:1-766 [pilon] Processing NODE_9341_length_353_cov_8.159483:1-353 [pilon] NODE_4661_length_647_cov_17.471483:1-647 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 360, Coverage: 61, minDepth: 15 [pilon] Confirmed 415 of 647 bases (64.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4661_length_647_cov_17.471483:1-647 [pilon] Processing NODE_4933_length_624_cov_1.564612:1-624 [pilon] NODE_5097_length_610_cov_42.323108:1-610 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 495, Coverage: 85, minDepth: 21 [pilon] Confirmed 504 of 610 bases (82.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5097_length_610_cov_42.323108:1-610 [pilon] Processing NODE_14657_length_243_cov_8.967213:1-243 [pilon] NODE_1878_length_1120_cov_3.629630:1-1120 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 99, Coverage: 11, minDepth: 5 [pilon] Confirmed 1003 of 1120 bases (89.55%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1878_length_1120_cov_3.629630:1-1120 [pilon] Processing NODE_11089_length_279_cov_42.531646:1-279 [pilon] NODE_2841_length_903_cov_33.134271:1-903 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 612, Coverage: 66, minDepth: 17 [pilon] Confirmed 779 of 903 bases (86.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2841_length_903_cov_33.134271:1-903 [pilon] Processing NODE_2616_length_942_cov_35.225335:1-942 [pilon] NODE_6443_length_507_cov_21.049223:1-507 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 179, Coverage: 19, minDepth: 5 [pilon] Confirmed 392 of 507 bases (77.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6443_length_507_cov_21.049223:1-507 [pilon] Processing NODE_2918_length_889_cov_22.428385:1-889 [pilon] NODE_14138_length_243_cov_13.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14138_length_243_cov_13.213115:1-243 [pilon] Processing NODE_11142_length_278_cov_24.872611:1-278 [pilon] NODE_4007_length_715_cov_2.870370:1-715 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 615 of 715 bases (86.01%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4007_length_715_cov_2.870370:1-715 [pilon] Processing NODE_6558_length_500_cov_1.762533:1-500 [pilon] NODE_12104_length_243_cov_51.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 130, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12104_length_243_cov_51.090164:1-243 [pilon] Processing NODE_10722_length_297_cov_11.755682:1-297 [pilon] NODE_8992_length_367_cov_11.715447:1-367 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 65, Coverage: 9, minDepth: 5 [pilon] Confirmed 230 of 367 bases (62.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8992_length_367_cov_11.715447:1-367 [pilon] Processing NODE_3344_length_806_cov_21.956204:1-806 [pilon] NODE_10854_length_290_cov_20.970414:1-290 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 77, Coverage: 3, minDepth: 5 [pilon] Confirmed 101 of 290 bases (34.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10854_length_290_cov_20.970414:1-290 [pilon] Processing NODE_9007_length_366_cov_15.371429:1-366 [pilon] NODE_6720_length_489_cov_10.967391:1-489 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 75, Coverage: 4, minDepth: 5 [pilon] Confirmed 176 of 489 bases (35.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6720_length_489_cov_10.967391:1-489 [pilon] Processing NODE_14605_length_243_cov_9.352459:1-243 [pilon] NODE_6012_length_540_cov_5.727924:1-540 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 60, Coverage: 13, minDepth: 5 [pilon] Confirmed 464 of 540 bases (85.93%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6012_length_540_cov_5.727924:1-540 [pilon] Processing NODE_8667_length_384_cov_15.638783:1-384 [pilon] NODE_4078_length_708_cov_1.713799:1-708 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 34, Coverage: 6, minDepth: 5 [pilon] Confirmed 452 of 708 bases (63.84%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4078_length_708_cov_1.713799:1-708 [pilon] Processing NODE_6778_length_485_cov_0.637363:1-485 [pilon] NODE_7496_length_443_cov_23.375776:1-443 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 192, Coverage: 27, minDepth: 7 [pilon] Confirmed 349 of 443 bases (78.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7496_length_443_cov_23.375776:1-443 [pilon] Processing NODE_7636_length_436_cov_0.612698:1-436 [pilon] NODE_11664_length_258_cov_10.963504:1-258 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 122 of 258 bases (47.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11664_length_258_cov_10.963504:1-258 [pilon] Processing NODE_4671_length_646_cov_23.716190:1-646 [pilon] NODE_11773_length_254_cov_30.308271:1-254 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 89, Coverage: 12, minDepth: 5 [pilon] Confirmed 200 of 254 bases (78.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11773_length_254_cov_30.308271:1-254 [pilon] Processing NODE_2388_length_992_cov_24.051665:1-992 [pilon] NODE_10321_length_312_cov_21.465969:1-312 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 86, Coverage: 3, minDepth: 5 [pilon] Confirmed 85 of 312 bases (27.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10321_length_312_cov_21.465969:1-312 [pilon] Processing NODE_10653_length_300_cov_10.491620:1-300 [pilon] NODE_10664_length_299_cov_28.264045:1-299 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 104, Coverage: 11, minDepth: 5 [pilon] Confirmed 225 of 299 bases (75.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10664_length_299_cov_28.264045:1-299 [pilon] Processing NODE_12993_length_243_cov_23.008197:1-243 [pilon] NODE_5126_length_608_cov_2.669405:1-608 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 43, Coverage: 8, minDepth: 5 [pilon] Confirmed 397 of 608 bases (65.30%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5126_length_608_cov_2.669405:1-608 [pilon] Processing NODE_12205_length_243_cov_36.581967:1-243 [pilon] NODE_214_length_2460_cov_11.129115:1-2460 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 694, Coverage: 36, minDepth: 9 [pilon] Confirmed 1831 of 2460 bases (74.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_214_length_2460_cov_11.129115:1-2460 [pilon] NODE_13289_length_243_cov_20.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_10355_length_311_cov_19.000000:1-311 [pilon] Finished processing NODE_13289_length_243_cov_20.295082:1-243 [pilon] Processing NODE_7833_length_426_cov_0.826230:1-426 [pilon] NODE_4933_length_624_cov_1.564612:1-624 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 321 of 624 bases (51.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4933_length_624_cov_1.564612:1-624 [pilon] Processing NODE_7268_length_456_cov_18.089552:1-456 [pilon] NODE_5062_length_613_cov_57.225610:1-613 log: [pilon] frags shovill.bam: coverage 87 [pilon] Total Reads: 655, Coverage: 87, minDepth: 22 [pilon] Confirmed 542 of 613 bases (88.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5062_length_613_cov_57.225610:1-613 [pilon] Processing NODE_11202_length_276_cov_12.683871:1-276 [pilon] NODE_12347_length_243_cov_32.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 87, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12347_length_243_cov_32.155738:1-243 [pilon] Processing NODE_14811_length_243_cov_7.631148:1-243 [pilon] NODE_229_length_2409_cov_19.367133:1-2409 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 1095, Coverage: 55, minDepth: 14 [pilon] Confirmed 2025 of 2409 bases (84.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_229_length_2409_cov_19.367133:1-2409 [pilon] Processing NODE_447_length_1974_cov_1.789530:1-1974 [pilon] NODE_2400_length_990_cov_21.706559:1-990 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 433, Coverage: 40, minDepth: 10 [pilon] Confirmed 631 of 990 bases (63.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2400_length_990_cov_21.706559:1-990 [pilon] Processing NODE_467_length_1951_cov_17.010929:1-1951 [pilon] NODE_10294_length_313_cov_30.291667:1-313 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 125, Coverage: 13, minDepth: 5 [pilon] Confirmed 230 of 313 bases (73.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10294_length_313_cov_30.291667:1-313 [pilon] Processing NODE_9005_length_366_cov_20.857143:1-366 [pilon] NODE_7174_length_461_cov_10.905882:1-461 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 67, Coverage: 10, minDepth: 5 [pilon] Confirmed 294 of 461 bases (63.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7174_length_461_cov_10.905882:1-461 [pilon] Processing NODE_9330_length_353_cov_23.508621:1-353 [pilon] NODE_9341_length_353_cov_8.159483:1-353 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 60, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 353 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9341_length_353_cov_8.159483:1-353 [pilon] Processing NODE_1025_length_1482_cov_17.448935:1-1482 [pilon] NODE_11089_length_279_cov_42.531646:1-279 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 161, Coverage: 7, minDepth: 5 [pilon] Confirmed 200 of 279 bases (71.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11089_length_279_cov_42.531646:1-279 [pilon] Processing NODE_11762_length_255_cov_13.388060:1-255 [pilon] NODE_5694_length_564_cov_1.205418:1-564 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 222 of 564 bases (39.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5694_length_564_cov_1.205418:1-564 [pilon] Processing NODE_6542_length_501_cov_1.373684:1-501 [pilon] NODE_14657_length_243_cov_8.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14657_length_243_cov_8.967213:1-243 [pilon] Processing NODE_5266_length_595_cov_26.135021:1-595 [pilon] NODE_11142_length_278_cov_24.872611:1-278 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 82, Coverage: 8, minDepth: 5 [pilon] Confirmed 184 of 278 bases (66.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11142_length_278_cov_24.872611:1-278 [pilon] Processing NODE_11319_length_270_cov_29.993289:1-270 [pilon] NODE_10355_length_311_cov_19.000000:1-311 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 73, Coverage: 12, minDepth: 5 [pilon] Confirmed 231 of 311 bases (74.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10355_length_311_cov_19.000000:1-311 [pilon] Processing NODE_14371_length_243_cov_11.278689:1-243 [pilon] NODE_2616_length_942_cov_35.225335:1-942 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 718, Coverage: 64, minDepth: 16 [pilon] Confirmed 781 of 942 bases (82.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2616_length_942_cov_35.225335:1-942 [pilon] Processing NODE_1495_length_1259_cov_22.955185:1-1259 [pilon] NODE_7268_length_456_cov_18.089552:1-456 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 134, Coverage: 8, minDepth: 5 [pilon] Confirmed 253 of 456 bases (55.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7268_length_456_cov_18.089552:1-456 [pilon] Processing NODE_13772_length_243_cov_15.860656:1-243 [pilon] NODE_2918_length_889_cov_22.428385:1-889 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 394, Coverage: 43, minDepth: 11 [pilon] Confirmed 621 of 889 bases (69.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2918_length_889_cov_22.428385:1-889 [pilon] Processing NODE_5074_length_612_cov_27.702648:1-612 [pilon] NODE_6558_length_500_cov_1.762533:1-500 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 188 of 500 bases (37.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6558_length_500_cov_1.762533:1-500 [pilon] Processing NODE_3497_length_784_cov_1.431373:1-784 [pilon] NODE_10722_length_297_cov_11.755682:1-297 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 46, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10722_length_297_cov_11.755682:1-297 [pilon] Processing NODE_13380_length_243_cov_19.540984:1-243 [pilon] NODE_14605_length_243_cov_9.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14605_length_243_cov_9.352459:1-243 [pilon] Processing NODE_2294_length_1012_cov_20.430976:1-1012 [pilon] NODE_3344_length_806_cov_21.956204:1-806 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 357, Coverage: 45, minDepth: 11 [pilon] Confirmed 608 of 806 bases (75.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3344_length_806_cov_21.956204:1-806 [pilon] Processing NODE_6791_length_483_cov_58.312155:1-483 [pilon] NODE_9007_length_366_cov_15.371429:1-366 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 84, Coverage: 11, minDepth: 5 [pilon] Confirmed 240 of 366 bases (65.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9007_length_366_cov_15.371429:1-366 [pilon] Processing NODE_6346_length_514_cov_7.569975:1-514 [pilon] NODE_8667_length_384_cov_15.638783:1-384 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 88, Coverage: 10, minDepth: 5 [pilon] Confirmed 242 of 384 bases (63.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8667_length_384_cov_15.638783:1-384 [pilon] Processing NODE_6855_length_480_cov_18.091922:1-480 [pilon] NODE_7636_length_436_cov_0.612698:1-436 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 436 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7636_length_436_cov_0.612698:1-436 [pilon] Processing NODE_6192_length_525_cov_2.586634:1-525 [pilon] NODE_6778_length_485_cov_0.637363:1-485 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 485 bases (26.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6778_length_485_cov_0.637363:1-485 [pilon] Processing NODE_357_length_2117_cov_17.620240:1-2117 [pilon] NODE_14811_length_243_cov_7.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14811_length_243_cov_7.631148:1-243 [pilon] Processing NODE_7935_length_421_cov_11.266667:1-421 [pilon] NODE_10653_length_300_cov_10.491620:1-300 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 44, Coverage: 3, minDepth: 5 [pilon] Confirmed 119 of 300 bases (39.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10653_length_300_cov_10.491620:1-300 [pilon] Processing NODE_14065_length_243_cov_13.704918:1-243 [pilon] NODE_4671_length_646_cov_23.716190:1-646 log: [pilon] NODE_12205_length_243_cov_36.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12993_length_243_cov_23.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 286, Coverage: 42, minDepth: 11 [pilon] Confirmed 495 of 646 bases (76.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4671_length_646_cov_23.716190:1-646 [pilon] Finished processing NODE_12993_length_243_cov_23.008197:1-243 [pilon] Processing NODE_1748_length_1160_cov_31.331088:1-1160 [pilon] Finished processing NODE_12205_length_243_cov_36.581967:1-243 [pilon] Processing NODE_11019_length_282_cov_36.459627:1-282 [pilon] Processing NODE_11133_length_279_cov_8.101266:1-279 [pilon] NODE_11202_length_276_cov_12.683871:1-276 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 47, Coverage: 7, minDepth: 5 [pilon] Confirmed 189 of 276 bases (68.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11202_length_276_cov_12.683871:1-276 [pilon] Processing NODE_14575_length_243_cov_9.639344:1-243 [pilon] NODE_7833_length_426_cov_0.826230:1-426 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 195 of 426 bases (45.77%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7833_length_426_cov_0.826230:1-426 [pilon] Processing NODE_12028_length_246_cov_10.824000:1-246 [pilon] NODE_11762_length_255_cov_13.388060:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 40, Coverage: 4, minDepth: 5 [pilon] Confirmed 81 of 255 bases (31.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11762_length_255_cov_13.388060:1-255 [pilon] Processing NODE_8300_length_404_cov_66.257951:1-404 [pilon] NODE_9330_length_353_cov_23.508621:1-353 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 131, Coverage: 11, minDepth: 5 [pilon] Confirmed 239 of 353 bases (67.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9330_length_353_cov_23.508621:1-353 [pilon] Processing NODE_3866_length_732_cov_17.068740:1-732 [pilon] NODE_447_length_1974_cov_1.789530:1-1974 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 100, Coverage: 6, minDepth: 5 [pilon] Confirmed 1062 of 1974 bases (53.80%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_447_length_1974_cov_1.789530:1-1974 [pilon] Processing NODE_1805_length_1146_cov_2.867317:1-1146 [pilon] NODE_2388_length_992_cov_24.051665:1-992 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 740, Coverage: 76, minDepth: 19 [pilon] Confirmed 561 of 992 bases (56.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2388_length_992_cov_24.051665:1-992 [pilon] Processing NODE_7168_length_461_cov_33.135294:1-461 [pilon] NODE_6542_length_501_cov_1.373684:1-501 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 158 of 501 bases (31.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6542_length_501_cov_1.373684:1-501 [pilon] Processing NODE_10501_length_304_cov_26.021858:1-304 [pilon] NODE_467_length_1951_cov_17.010929:1-1951 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 726, Coverage: 48, minDepth: 12 [pilon] Confirmed 1674 of 1951 bases (85.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_467_length_1951_cov_17.010929:1-1951 [pilon] Processing NODE_5019_length_617_cov_15.489919:1-617 [pilon] NODE_5266_length_595_cov_26.135021:1-595 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 285, Coverage: 41, minDepth: 10 [pilon] Confirmed 532 of 595 bases (89.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5266_length_595_cov_26.135021:1-595 [pilon] Processing NODE_8394_length_400_cov_12.050179:1-400 [pilon] NODE_9005_length_366_cov_20.857143:1-366 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 98, Coverage: 12, minDepth: 5 [pilon] Confirmed 207 of 366 bases (56.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9005_length_366_cov_20.857143:1-366 [pilon] Processing NODE_827_length_1611_cov_24.190604:1-1611 [pilon] NODE_1025_length_1482_cov_17.448935:1-1482 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 527, Coverage: 41, minDepth: 10 [pilon] Confirmed 1078 of 1482 bases (72.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1025_length_1482_cov_17.448935:1-1482 [pilon] Processing NODE_7402_length_448_cov_8.629969:1-448 [pilon] NODE_13772_length_243_cov_15.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13772_length_243_cov_15.860656:1-243 [pilon] Processing NODE_15171_length_176_cov_10.381818:1-176 [pilon] NODE_14371_length_243_cov_11.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14371_length_243_cov_11.278689:1-243 [pilon] Processing NODE_3101_length_852_cov_25.097127:1-852 [pilon] NODE_11319_length_270_cov_29.993289:1-270 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 86, Coverage: 4, minDepth: 5 [pilon] Confirmed 97 of 270 bases (35.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11319_length_270_cov_29.993289:1-270 [pilon] Processing NODE_1252_length_1364_cov_3.181818:1-1364 [pilon] NODE_1495_length_1259_cov_22.955185:1-1259 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 613, Coverage: 36, minDepth: 9 [pilon] Confirmed 1132 of 1259 bases (89.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1495_length_1259_cov_22.955185:1-1259 [pilon] Processing NODE_6372_length_512_cov_14.795396:1-512 [pilon] NODE_2294_length_1012_cov_20.430976:1-1012 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 414, Coverage: 40, minDepth: 10 [pilon] Confirmed 854 of 1012 bases (84.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2294_length_1012_cov_20.430976:1-1012 [pilon] NODE_5074_length_612_cov_27.702648:1-612 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 360, Coverage: 32, minDepth: 8 [pilon] Confirmed 387 of 612 bases (63.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5074_length_612_cov_27.702648:1-612 [pilon] Processing NODE_9563_length_343_cov_13.031532:1-343 [pilon] Processing NODE_14327_length_243_cov_11.647541:1-243 [pilon] NODE_6346_length_514_cov_7.569975:1-514 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 71, Coverage: 14, minDepth: 5 [pilon] Confirmed 393 of 514 bases (76.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6346_length_514_cov_7.569975:1-514 [pilon] Processing NODE_2603_length_945_cov_3.575243:1-945 [pilon] NODE_13380_length_243_cov_19.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13380_length_243_cov_19.540984:1-243 [pilon] Processing NODE_14960_length_243_cov_5.991803:1-243 [pilon] NODE_3497_length_784_cov_1.431373:1-784 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 350 of 784 bases (44.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3497_length_784_cov_1.431373:1-784 [pilon] Processing NODE_11647_length_258_cov_15.970803:1-258 [pilon] NODE_14575_length_243_cov_9.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14575_length_243_cov_9.639344:1-243 [pilon] Processing NODE_72_length_3288_cov_18.425639:1-3288 [pilon] NODE_6855_length_480_cov_18.091922:1-480 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 155, Coverage: 18, minDepth: 5 [pilon] Confirmed 327 of 480 bases (68.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6855_length_480_cov_18.091922:1-480 [pilon] Processing NODE_7507_length_443_cov_1.267081:1-443 [pilon] NODE_6192_length_525_cov_2.586634:1-525 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 34, Coverage: 6, minDepth: 5 [pilon] Confirmed 373 of 525 bases (71.05%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6192_length_525_cov_2.586634:1-525 [pilon] Processing NODE_14690_length_243_cov_8.672131:1-243 [pilon] NODE_8394_length_400_cov_12.050179:1-400 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 70, Coverage: 6, minDepth: 5 [pilon] Confirmed 188 of 400 bases (47.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8394_length_400_cov_12.050179:1-400 [pilon] Processing NODE_6568_length_499_cov_1.280423:1-499 [pilon] NODE_6791_length_483_cov_58.312155:1-483 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 489, Coverage: 86, minDepth: 22 [pilon] Confirmed 436 of 483 bases (90.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6791_length_483_cov_58.312155:1-483 [pilon] Processing NODE_10278_length_314_cov_26.077720:1-314 [pilon] NODE_7935_length_421_cov_11.266667:1-421 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 92, Coverage: 20, minDepth: 5 [pilon] Confirmed 384 of 421 bases (91.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7935_length_421_cov_11.266667:1-421 [pilon] Processing NODE_3080_length_857_cov_37.550272:1-857 [pilon] NODE_14065_length_243_cov_13.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_11133_length_279_cov_8.101266:1-279 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 34, Coverage: 3, minDepth: 5 [pilon] Confirmed 68 of 279 bases (24.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11133_length_279_cov_8.101266:1-279 [pilon] Finished processing NODE_14065_length_243_cov_13.704918:1-243 [pilon] Processing NODE_14496_length_243_cov_10.319672:1-243 [pilon] Processing NODE_8632_length_386_cov_33.260377:1-386 [pilon] Processing NODE_7569_length_440_cov_1.125392:1-440 [pilon] NODE_3866_length_732_cov_17.068740:1-732 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 227, Coverage: 30, minDepth: 8 [pilon] Confirmed 572 of 732 bases (78.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3866_length_732_cov_17.068740:1-732 [pilon] Processing NODE_5614_length_569_cov_23.256696:1-569 [pilon] NODE_357_length_2117_cov_17.620240:1-2117 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 892, Coverage: 49, minDepth: 12 [pilon] Confirmed 1682 of 2117 bases (79.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_357_length_2117_cov_17.620240:1-2117 [pilon] Processing NODE_12270_length_243_cov_34.024590:1-243 [pilon] NODE_11019_length_282_cov_36.459627:1-282 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 127, Coverage: 15, minDepth: 5 [pilon] Confirmed 228 of 282 bases (80.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11019_length_282_cov_36.459627:1-282 [pilon] Processing NODE_9339_length_353_cov_9.219828:1-353 [pilon] NODE_1805_length_1146_cov_2.867317:1-1146 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 83, Coverage: 9, minDepth: 5 [pilon] Confirmed 795 of 1146 bases (69.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1805_length_1146_cov_2.867317:1-1146 [pilon] Processing NODE_7860_length_424_cov_26.844884:1-424 [pilon] NODE_12028_length_246_cov_10.824000:1-246 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 33, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12028_length_246_cov_10.824000:1-246 [pilon] Processing NODE_14929_length_243_cov_6.393443:1-243 [pilon] NODE_1748_length_1160_cov_31.331088:1-1160 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 895, Coverage: 38, minDepth: 10 [pilon] Confirmed 903 of 1160 bases (77.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1748_length_1160_cov_31.331088:1-1160 [pilon] Processing NODE_7668_length_434_cov_28.287540:1-434 [pilon] NODE_8300_length_404_cov_66.257951:1-404 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 426, Coverage: 81, minDepth: 20 [pilon] Confirmed 366 of 404 bases (90.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8300_length_404_cov_66.257951:1-404 [pilon] Processing NODE_4801_length_634_cov_21.001949:1-634 [pilon] NODE_10501_length_304_cov_26.021858:1-304 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 118, Coverage: 8, minDepth: 5 [pilon] Confirmed 215 of 304 bases (70.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10501_length_304_cov_26.021858:1-304 [pilon] Processing NODE_7001_length_471_cov_21.800000:1-471 [pilon] NODE_7168_length_461_cov_33.135294:1-461 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 261, Coverage: 44, minDepth: 11 [pilon] Confirmed 388 of 461 bases (84.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7168_length_461_cov_33.135294:1-461 [pilon] Processing NODE_8011_length_417_cov_52.057432:1-417 [pilon] NODE_15171_length_176_cov_10.381818:1-176 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 176 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15171_length_176_cov_10.381818:1-176 [pilon] Processing NODE_14084_length_243_cov_13.590164:1-243 [pilon] NODE_5019_length_617_cov_15.489919:1-617 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 174, Coverage: 21, minDepth: 5 [pilon] Confirmed 579 of 617 bases (93.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5019_length_617_cov_15.489919:1-617 [pilon] Processing NODE_10821_length_291_cov_29.329412:1-291 [pilon] NODE_7402_length_448_cov_8.629969:1-448 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 34, Coverage: 2, minDepth: 5 [pilon] Confirmed 41 of 448 bases (9.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7402_length_448_cov_8.629969:1-448 [pilon] Processing NODE_12596_length_243_cov_27.639344:1-243 [pilon] NODE_827_length_1611_cov_24.190604:1-1611 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 837, Coverage: 60, minDepth: 15 [pilon] Confirmed 1445 of 1611 bases (89.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_827_length_1611_cov_24.190604:1-1611 [pilon] NODE_6568_length_499_cov_1.280423:1-499 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 499 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6568_length_499_cov_1.280423:1-499 [pilon] Processing NODE_9986_length_326_cov_21.385366:1-326 [pilon] NODE_6372_length_512_cov_14.795396:1-512 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 127, Coverage: 6, minDepth: 5 [pilon] Confirmed 201 of 512 bases (39.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6372_length_512_cov_14.795396:1-512 [pilon] Processing NODE_12029_length_246_cov_10.568000:1-246 [pilon] NODE_1252_length_1364_cov_3.181818:1-1364 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 107, Coverage: 10, minDepth: 5 [pilon] Confirmed 930 of 1364 bases (68.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1252_length_1364_cov_3.181818:1-1364 [pilon] Processing NODE_14469_length_243_cov_10.508197:1-243 [pilon] NODE_3101_length_852_cov_25.097127:1-852 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 488, Coverage: 28, minDepth: 7 [pilon] Confirmed 672 of 852 bases (78.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3101_length_852_cov_25.097127:1-852 [pilon] Processing NODE_8386_length_400_cov_39.946237:1-400 [pilon] NODE_14496_length_243_cov_10.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14496_length_243_cov_10.319672:1-243 [pilon] Processing NODE_11562_length_261_cov_26.792857:1-261 [pilon] NODE_9563_length_343_cov_13.031532:1-343 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 63, Coverage: 9, minDepth: 5 [pilon] Confirmed 245 of 343 bases (71.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9563_length_343_cov_13.031532:1-343 [pilon] Processing NODE_10771_length_294_cov_21.508671:1-294 [pilon] NODE_14327_length_243_cov_11.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14327_length_243_cov_11.647541:1-243 [pilon] Processing NODE_13323_length_243_cov_20.065574:1-243 [pilon] NODE_2603_length_945_cov_3.575243:1-945 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 82, Coverage: 10, minDepth: 5 [pilon] Confirmed 635 of 945 bases (67.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2603_length_945_cov_3.575243:1-945 [pilon] Processing NODE_8341_length_403_cov_0.716312:1-403 [pilon] NODE_14960_length_243_cov_5.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14960_length_243_cov_5.991803:1-243 [pilon] NODE_11647_length_258_cov_15.970803:1-258 log: [pilon] Processing NODE_11479_length_264_cov_16.622378:1-264 [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 47, Coverage: 4, minDepth: 5 [pilon] Confirmed 69 of 258 bases (26.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11647_length_258_cov_15.970803:1-258 [pilon] Processing NODE_6999_length_471_cov_27.834286:1-471 [pilon] NODE_7507_length_443_cov_1.267081:1-443 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 88 of 443 bases (19.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7507_length_443_cov_1.267081:1-443 [pilon] Processing NODE_14721_length_243_cov_8.401639:1-243 [pilon] NODE_3080_length_857_cov_37.550272:1-857 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 615, Coverage: 76, minDepth: 19 [pilon] Confirmed 613 of 857 bases (71.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3080_length_857_cov_37.550272:1-857 [pilon] Processing NODE_2891_length_894_cov_42.861578:1-894 [pilon] NODE_14690_length_243_cov_8.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14690_length_243_cov_8.672131:1-243 [pilon] NODE_10278_length_314_cov_26.077720:1-314 log: [pilon] Processing NODE_3736_length_750_cov_6.310016:1-750 [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 112, Coverage: 6, minDepth: 5 [pilon] Confirmed 150 of 314 bases (47.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10278_length_314_cov_26.077720:1-314 [pilon] Processing NODE_1428_length_1290_cov_8.949530:1-1290 [pilon] NODE_7569_length_440_cov_1.125392:1-440 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 13, Coverage: 4, minDepth: 5 [pilon] Confirmed 110 of 440 bases (25.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7569_length_440_cov_1.125392:1-440 [pilon] Processing NODE_2353_length_1000_cov_18.806598:1-1000 [pilon] NODE_8632_length_386_cov_33.260377:1-386 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 200, Coverage: 28, minDepth: 7 [pilon] Confirmed 331 of 386 bases (85.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8632_length_386_cov_33.260377:1-386 [pilon] Processing NODE_10390_length_309_cov_17.968085:1-309 [pilon] NODE_12270_length_243_cov_34.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12270_length_243_cov_34.024590:1-243 [pilon] Processing NODE_3590_length_770_cov_43.870570:1-770 [pilon] NODE_72_length_3288_cov_18.425639:1-3288 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1367, Coverage: 54, minDepth: 14 [pilon] Confirmed 2631 of 3288 bases (80.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_72_length_3288_cov_18.425639:1-3288 [pilon] Processing NODE_9576_length_342_cov_25.809955:1-342 [pilon] NODE_9339_length_353_cov_9.219828:1-353 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 47, Coverage: 7, minDepth: 5 [pilon] Confirmed 200 of 353 bases (56.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9339_length_353_cov_9.219828:1-353 [pilon] Processing NODE_462_length_1962_cov_1.919609:1-1962 [pilon] NODE_5614_length_569_cov_23.256696:1-569 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 233, Coverage: 32, minDepth: 8 [pilon] Confirmed 521 of 569 bases (91.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5614_length_569_cov_23.256696:1-569 [pilon] Processing NODE_9557_length_344_cov_8.591928:1-344 [pilon] NODE_7860_length_424_cov_26.844884:1-424 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 177, Coverage: 33, minDepth: 8 [pilon] Confirmed 342 of 424 bases (80.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7860_length_424_cov_26.844884:1-424 [pilon] Processing NODE_11286_length_273_cov_8.631579:1-273 [pilon] NODE_7668_length_434_cov_28.287540:1-434 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 186, Coverage: 12, minDepth: 5 [pilon] Confirmed 253 of 434 bases (58.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7668_length_434_cov_28.287540:1-434 [pilon] Processing NODE_3445_length_792_cov_12.485842:1-792 [pilon] NODE_4801_length_634_cov_21.001949:1-634 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 269, Coverage: 35, minDepth: 9 [pilon] Confirmed 421 of 634 bases (66.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4801_length_634_cov_21.001949:1-634 [pilon] Processing NODE_7399_length_448_cov_11.639144:1-448 [pilon] NODE_14929_length_243_cov_6.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14929_length_243_cov_6.393443:1-243 [pilon] NODE_14084_length_243_cov_13.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14084_length_243_cov_13.590164:1-243 [pilon] Processing NODE_14640_length_243_cov_9.090164:1-243 [pilon] NODE_7001_length_471_cov_21.800000:1-471 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 197, Coverage: 31, minDepth: 8 [pilon] Confirmed 397 of 471 bases (84.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7001_length_471_cov_21.800000:1-471 [pilon] Processing NODE_2501_length_967_cov_17.845154:1-967 [pilon] NODE_12596_length_243_cov_27.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12596_length_243_cov_27.639344:1-243 [pilon] Processing NODE_11178_length_276_cov_22.187097:1-276 [pilon] NODE_10821_length_291_cov_29.329412:1-291 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 115, Coverage: 12, minDepth: 5 [pilon] Confirmed 226 of 291 bases (77.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10821_length_291_cov_29.329412:1-291 [pilon] Processing NODE_7740_length_430_cov_25.831715:1-430 [pilon] NODE_8011_length_417_cov_52.057432:1-417 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 351, Coverage: 59, minDepth: 15 [pilon] Confirmed 372 of 417 bases (89.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8011_length_417_cov_52.057432:1-417 [pilon] Processing NODE_3534_length_779_cov_12.858663:1-779 [pilon] NODE_11562_length_261_cov_26.792857:1-261 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 85, Coverage: 2, minDepth: 5 [pilon] Confirmed 9 of 261 bases (3.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11562_length_261_cov_26.792857:1-261 [pilon] Processing NODE_8402_length_399_cov_23.992806:1-399 [pilon] NODE_12029_length_246_cov_10.568000:1-246 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12029_length_246_cov_10.568000:1-246 [pilon] Processing NODE_14906_length_243_cov_6.606557:1-243 [pilon] NODE_9986_length_326_cov_21.385366:1-326 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 101, Coverage: 13, minDepth: 5 [pilon] Confirmed 235 of 326 bases (72.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9986_length_326_cov_21.385366:1-326 [pilon] Processing NODE_11039_length_282_cov_14.118012:1-282 [pilon] NODE_14469_length_243_cov_10.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14469_length_243_cov_10.508197:1-243 [pilon] Processing NODE_1269_length_1355_cov_2.355754:1-1355 [pilon] NODE_8386_length_400_cov_39.946237:1-400 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 262, Coverage: 25, minDepth: 6 [pilon] Confirmed 256 of 400 bases (64.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8386_length_400_cov_39.946237:1-400 [pilon] Processing NODE_399_length_2048_cov_10.601972:1-2048 [pilon] NODE_13323_length_243_cov_20.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13323_length_243_cov_20.065574:1-243 [pilon] Processing NODE_15044_length_241_cov_27.008333:1-241 [pilon] NODE_14721_length_243_cov_8.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14721_length_243_cov_8.401639:1-243 [pilon] Processing NODE_13946_length_243_cov_14.540984:1-243 [pilon] NODE_10771_length_294_cov_21.508671:1-294 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 92, Coverage: 6, minDepth: 5 [pilon] Confirmed 175 of 294 bases (59.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10771_length_294_cov_21.508671:1-294 [pilon] Processing NODE_8966_length_368_cov_22.797571:1-368 [pilon] NODE_8341_length_403_cov_0.716312:1-403 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 403 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8341_length_403_cov_0.716312:1-403 [pilon] Processing NODE_9913_length_330_cov_8.138756:1-330 [pilon] NODE_11479_length_264_cov_16.622378:1-264 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 47, Coverage: 4, minDepth: 5 [pilon] Confirmed 99 of 264 bases (37.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11479_length_264_cov_16.622378:1-264 [pilon] Processing NODE_2714_length_926_cov_14.647205:1-926 [pilon] NODE_6999_length_471_cov_27.834286:1-471 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 236, Coverage: 30, minDepth: 8 [pilon] Confirmed 327 of 471 bases (69.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6999_length_471_cov_27.834286:1-471 [pilon] Processing NODE_1094_length_1443_cov_25.192133:1-1443 [pilon] NODE_3736_length_750_cov_6.310016:1-750 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 104, Coverage: 5, minDepth: 5 [pilon] Confirmed 337 of 750 bases (44.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3736_length_750_cov_6.310016:1-750 [pilon] Processing NODE_2019_length_1082_cov_11.710718:1-1082 [pilon] NODE_1428_length_1290_cov_8.949530:1-1290 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 306, Coverage: 24, minDepth: 6 [pilon] Confirmed 1039 of 1290 bases (80.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1428_length_1290_cov_8.949530:1-1290 [pilon] Processing NODE_6705_length_490_cov_2.915989:1-490 [pilon] NODE_3590_length_770_cov_43.870570:1-770 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 667, Coverage: 84, minDepth: 21 [pilon] Confirmed 699 of 770 bases (90.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3590_length_770_cov_43.870570:1-770 [pilon] Processing NODE_4770_length_638_cov_1.783366:1-638 [pilon] NODE_2353_length_1000_cov_18.806598:1-1000 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 423, Coverage: 40, minDepth: 10 [pilon] Confirmed 633 of 1000 bases (63.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2353_length_1000_cov_18.806598:1-1000 [pilon] Processing NODE_8483_length_395_cov_14.653285:1-395 [pilon] NODE_2891_length_894_cov_42.861578:1-894 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 737, Coverage: 90, minDepth: 23 [pilon] Confirmed 776 of 894 bases (86.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2891_length_894_cov_42.861578:1-894 [pilon] Processing NODE_2578_length_951_cov_1.662651:1-951 [pilon] NODE_10390_length_309_cov_17.968085:1-309 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 75, Coverage: 5, minDepth: 5 [pilon] Confirmed 162 of 309 bases (52.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10390_length_309_cov_17.968085:1-309 [pilon] Processing NODE_9856_length_332_cov_17.677725:1-332 [pilon] NODE_7399_length_448_cov_11.639144:1-448 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 85, Coverage: 8, minDepth: 5 [pilon] Confirmed 288 of 448 bases (64.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7399_length_448_cov_11.639144:1-448 [pilon] Processing NODE_14428_length_243_cov_10.836066:1-243 [pilon] NODE_3445_length_792_cov_12.485842:1-792 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 190, Coverage: 31, minDepth: 8 [pilon] Confirmed 574 of 792 bases (72.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3445_length_792_cov_12.485842:1-792 [pilon] Processing NODE_3028_length_868_cov_2.485944:1-868 [pilon] NODE_11286_length_273_cov_8.631579:1-273 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 28, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11286_length_273_cov_8.631579:1-273 [pilon] Processing NODE_8428_length_398_cov_21.061372:1-398 [pilon] NODE_9557_length_344_cov_8.591928:1-344 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 53, Coverage: 12, minDepth: 5 [pilon] Confirmed 276 of 344 bases (80.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9557_length_344_cov_8.591928:1-344 [pilon] Processing NODE_8371_length_402_cov_1.615658:1-402 [pilon] NODE_8402_length_399_cov_23.992806:1-399 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 146, Coverage: 16, minDepth: 5 [pilon] Confirmed 239 of 399 bases (59.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8402_length_399_cov_23.992806:1-399 [pilon] Processing NODE_9517_length_345_cov_18.468750:1-345 [pilon] NODE_9576_length_342_cov_25.809955:1-342 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 114, Coverage: 5, minDepth: 5 [pilon] Confirmed 152 of 342 bases (44.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9576_length_342_cov_25.809955:1-342 [pilon] Processing NODE_7958_length_420_cov_12.401338:1-420 [pilon] NODE_462_length_1962_cov_1.919609:1-1962 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 125, Coverage: 8, minDepth: 5 [pilon] Confirmed 1559 of 1962 bases (79.46%) [pilon] Corrected 7 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_462_length_1962_cov_1.919609:1-1962 [pilon] Processing NODE_13855_length_243_cov_15.270492:1-243 [pilon] NODE_14906_length_243_cov_6.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14906_length_243_cov_6.606557:1-243 [pilon] Processing NODE_6395_length_510_cov_28.079692:1-510 [pilon] NODE_14640_length_243_cov_9.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14640_length_243_cov_9.090164:1-243 [pilon] Processing NODE_15211_length_154_cov_7.242424:1-154 [pilon] NODE_2501_length_967_cov_17.845154:1-967 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 358, Coverage: 32, minDepth: 8 [pilon] Confirmed 848 of 967 bases (87.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2501_length_967_cov_17.845154:1-967 [pilon] Processing NODE_9894_length_330_cov_19.583732:1-330 [pilon] NODE_7740_length_430_cov_25.831715:1-430 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 185, Coverage: 33, minDepth: 8 [pilon] Confirmed 388 of 430 bases (90.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7740_length_430_cov_25.831715:1-430 [pilon] Processing NODE_2509_length_965_cov_36.558057:1-965 [pilon] NODE_11178_length_276_cov_22.187097:1-276 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 69, Coverage: 7, minDepth: 5 [pilon] Confirmed 174 of 276 bases (63.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11178_length_276_cov_22.187097:1-276 [pilon] Processing NODE_6413_length_510_cov_1.416452:1-510 [pilon] NODE_3534_length_779_cov_12.858663:1-779 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 250, Coverage: 22, minDepth: 6 [pilon] Confirmed 669 of 779 bases (85.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3534_length_779_cov_12.858663:1-779 [pilon] Processing NODE_4419_length_670_cov_0.825137:1-670 [pilon] NODE_11039_length_282_cov_14.118012:1-282 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 176 of 282 bases (62.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11039_length_282_cov_14.118012:1-282 [pilon] Processing NODE_8217_length_408_cov_0.787456:1-408 [pilon] NODE_1269_length_1355_cov_2.355754:1-1355 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 91, Coverage: 9, minDepth: 5 [pilon] Confirmed 1053 of 1355 bases (77.71%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1269_length_1355_cov_2.355754:1-1355 [pilon] Processing NODE_10528_length_303_cov_25.225275:1-303 [pilon] NODE_15044_length_241_cov_27.008333:1-241 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 241 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15044_length_241_cov_27.008333:1-241 [pilon] Processing NODE_13247_length_243_cov_20.680328:1-243 [pilon] NODE_399_length_2048_cov_10.601972:1-2048 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 542, Coverage: 28, minDepth: 7 [pilon] Confirmed 1778 of 2048 bases (86.82%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_399_length_2048_cov_10.601972:1-2048 [pilon] Processing NODE_1908_length_1110_cov_28.263903:1-1110 [pilon] NODE_2019_length_1082_cov_11.710718:1-1082 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 275, Coverage: 22, minDepth: 6 [pilon] Confirmed 832 of 1082 bases (76.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2019_length_1082_cov_11.710718:1-1082 [pilon] Processing NODE_8773_length_378_cov_23.712062:1-378 [pilon] NODE_13946_length_243_cov_14.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13946_length_243_cov_14.540984:1-243 [pilon] Processing NODE_13417_length_243_cov_19.131148:1-243 [pilon] NODE_9517_length_345_cov_18.468750:1-345 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 93, Coverage: 16, minDepth: 5 [pilon] Confirmed 299 of 345 bases (86.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9517_length_345_cov_18.468750:1-345 [pilon] Processing NODE_5726_length_561_cov_20.990909:1-561 [pilon] NODE_9913_length_330_cov_8.138756:1-330 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 40, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 330 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9913_length_330_cov_8.138756:1-330 [pilon] Processing NODE_1452_length_1280_cov_2.395168:1-1280 [pilon] NODE_8966_length_368_cov_22.797571:1-368 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 128, Coverage: 11, minDepth: 5 [pilon] Confirmed 237 of 368 bases (64.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8966_length_368_cov_22.797571:1-368 [pilon] Processing NODE_7331_length_452_cov_0.676737:1-452 [pilon] NODE_6705_length_490_cov_2.915989:1-490 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 25, Coverage: 7, minDepth: 5 [pilon] Confirmed 282 of 490 bases (57.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6705_length_490_cov_2.915989:1-490 [pilon] Processing NODE_6_length_6713_cov_43.613471:1-6713 [pilon] NODE_1094_length_1443_cov_25.192133:1-1443 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1002, Coverage: 54, minDepth: 14 [pilon] Confirmed 945 of 1443 bases (65.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1094_length_1443_cov_25.192133:1-1443 [pilon] Processing NODE_6618_length_496_cov_3.168000:1-496 [pilon] NODE_4770_length_638_cov_1.783366:1-638 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 43, Coverage: 8, minDepth: 5 [pilon] Confirmed 492 of 638 bases (77.12%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4770_length_638_cov_1.783366:1-638 [pilon] Processing NODE_1795_length_1148_cov_2.642648:1-1148 [pilon] NODE_8371_length_402_cov_1.615658:1-402 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 58 of 402 bases (14.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8371_length_402_cov_1.615658:1-402 [pilon] Processing NODE_4268_length_685_cov_2.193262:1-685 [pilon] NODE_6395_length_510_cov_28.079692:1-510 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 264, Coverage: 22, minDepth: 6 [pilon] Confirmed 246 of 510 bases (48.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6395_length_510_cov_28.079692:1-510 [pilon] Processing NODE_15153_length_189_cov_6.647059:1-189 [pilon] NODE_14428_length_243_cov_10.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14428_length_243_cov_10.836066:1-243 [pilon] Processing NODE_10033_length_324_cov_16.453202:1-324 [pilon] NODE_3028_length_868_cov_2.485944:1-868 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 46, Coverage: 7, minDepth: 5 [pilon] Confirmed 423 of 868 bases (48.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3028_length_868_cov_2.485944:1-868 [pilon] Processing NODE_1995_length_1088_cov_7.247156:1-1088 [pilon] NODE_2714_length_926_cov_14.647205:1-926 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 295, Coverage: 29, minDepth: 7 [pilon] Confirmed 806 of 926 bases (87.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2714_length_926_cov_14.647205:1-926 [pilon] Processing NODE_1740_length_1164_cov_18.877277:1-1164 [pilon] NODE_8483_length_395_cov_14.653285:1-395 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 107, Coverage: 14, minDepth: 5 [pilon] Confirmed 348 of 395 bases (88.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8483_length_395_cov_14.653285:1-395 [pilon] Processing NODE_1015_length_1487_cov_40.479502:1-1487 [pilon] NODE_2578_length_951_cov_1.662651:1-951 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 41, Coverage: 6, minDepth: 5 [pilon] Confirmed 444 of 951 bases (46.69%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2578_length_951_cov_1.662651:1-951 [pilon] Processing NODE_3646_length_762_cov_15.804992:1-762 [pilon] NODE_8428_length_398_cov_21.061372:1-398 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 134, Coverage: 10, minDepth: 5 [pilon] Confirmed 195 of 398 bases (48.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8428_length_398_cov_21.061372:1-398 [pilon] Processing NODE_6582_length_498_cov_10.427056:1-498 [pilon] NODE_8217_length_408_cov_0.787456:1-408 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 16, Coverage: 5, minDepth: 5 [pilon] Confirmed 192 of 408 bases (47.06%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8217_length_408_cov_0.787456:1-408 [pilon] Processing NODE_2775_length_913_cov_45.637626:1-913 [pilon] NODE_9856_length_332_cov_17.677725:1-332 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 84, Coverage: 3, minDepth: 5 [pilon] Confirmed 88 of 332 bases (26.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9856_length_332_cov_17.677725:1-332 [pilon] Processing NODE_8777_length_378_cov_19.649805:1-378 [pilon] NODE_13855_length_243_cov_15.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13855_length_243_cov_15.270492:1-243 [pilon] Processing NODE_3094_length_854_cov_12.603001:1-854 [pilon] NODE_4419_length_670_cov_0.825137:1-670 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 144 of 670 bases (21.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4419_length_670_cov_0.825137:1-670 [pilon] Processing NODE_9128_length_360_cov_19.033473:1-360 [pilon] NODE_7958_length_420_cov_12.401338:1-420 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 149, Coverage: 20, minDepth: 5 [pilon] Confirmed 378 of 420 bases (90.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7958_length_420_cov_12.401338:1-420 [pilon] Processing NODE_4431_length_668_cov_11.996344:1-668 [pilon] NODE_9894_length_330_cov_19.583732:1-330 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 104, Coverage: 13, minDepth: 5 [pilon] Confirmed 267 of 330 bases (80.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9894_length_330_cov_19.583732:1-330 [pilon] Processing NODE_7016_length_470_cov_59.266476:1-470 [pilon] NODE_6413_length_510_cov_1.416452:1-510 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 24, Coverage: 4, minDepth: 5 [pilon] Confirmed 240 of 510 bases (47.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6413_length_510_cov_1.416452:1-510 [pilon] Processing NODE_13246_length_243_cov_20.680328:1-243 [pilon] NODE_15211_length_154_cov_7.242424:1-154 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 154 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15211_length_154_cov_7.242424:1-154 [pilon] Processing NODE_304_length_2236_cov_1.414657:1-2236 [pilon] NODE_8773_length_378_cov_23.712062:1-378 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 140, Coverage: 21, minDepth: 5 [pilon] Confirmed 338 of 378 bases (89.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8773_length_378_cov_23.712062:1-378 [pilon] Processing NODE_644_length_1754_cov_1.664421:1-1754 [pilon] NODE_13247_length_243_cov_20.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13247_length_243_cov_20.680328:1-243 [pilon] Processing NODE_30_length_4619_cov_17.853490:1-4619 [pilon] NODE_1795_length_1148_cov_2.642648:1-1148 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 87, Coverage: 10, minDepth: 5 [pilon] Confirmed 1008 of 1148 bases (87.80%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1795_length_1148_cov_2.642648:1-1148 [pilon] Processing NODE_12613_length_243_cov_27.434426:1-243 [pilon] NODE_2509_length_965_cov_36.558057:1-965 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 717, Coverage: 78, minDepth: 20 [pilon] Confirmed 880 of 965 bases (91.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2509_length_965_cov_36.558057:1-965 [pilon] Processing NODE_13065_length_243_cov_22.262295:1-243 [pilon] NODE_1908_length_1110_cov_28.263903:1-1110 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 685, Coverage: 55, minDepth: 14 [pilon] Confirmed 924 of 1110 bases (83.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1908_length_1110_cov_28.263903:1-1110 [pilon] Processing NODE_946_length_1531_cov_26.238298:1-1531 [pilon] NODE_1452_length_1280_cov_2.395168:1-1280 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 87, Coverage: 9, minDepth: 5 [pilon] Confirmed 1095 of 1280 bases (85.55%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1452_length_1280_cov_2.395168:1-1280 [pilon] Processing NODE_6274_length_519_cov_25.763819:1-519 [pilon] NODE_13417_length_243_cov_19.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13417_length_243_cov_19.131148:1-243 [pilon] Processing NODE_77_length_3246_cov_11.819840:1-3246 [pilon] NODE_6618_length_496_cov_3.168000:1-496 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 256 of 496 bases (51.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6618_length_496_cov_3.168000:1-496 [pilon] Processing NODE_3753_length_747_cov_9.549521:1-747 [pilon] NODE_7331_length_452_cov_0.676737:1-452 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 3, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 452 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7331_length_452_cov_0.676737:1-452 [pilon] Processing NODE_11472_length_264_cov_19.104895:1-264 [pilon] NODE_1995_length_1088_cov_7.247156:1-1088 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 169, Coverage: 10, minDepth: 5 [pilon] Confirmed 692 of 1088 bases (63.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1995_length_1088_cov_7.247156:1-1088 [pilon] Processing NODE_13160_length_243_cov_21.450820:1-243 [pilon] NODE_10033_length_324_cov_16.453202:1-324 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 47, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 324 bases (40.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10033_length_324_cov_16.453202:1-324 [pilon] Processing NODE_3219_length_830_cov_23.586742:1-830 [pilon] NODE_10528_length_303_cov_25.225275:1-303 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 83, Coverage: 4, minDepth: 5 [pilon] Confirmed 139 of 303 bases (45.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10528_length_303_cov_25.225275:1-303 [pilon] Processing NODE_9838_length_333_cov_10.485849:1-333 [pilon] NODE_1015_length_1487_cov_40.479502:1-1487 log: [pilon] frags shovill.bam: coverage 98 [pilon] Total Reads: 1267, Coverage: 98, minDepth: 25 [pilon] Confirmed 1043 of 1487 bases (70.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1015_length_1487_cov_40.479502:1-1487 [pilon] Processing NODE_7545_length_441_cov_17.356250:1-441 [pilon] NODE_4431_length_668_cov_11.996344:1-668 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 143, Coverage: 19, minDepth: 5 [pilon] Confirmed 527 of 668 bases (78.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4431_length_668_cov_11.996344:1-668 [pilon] Processing NODE_2362_length_999_cov_1.986333:1-999 [pilon] NODE_4268_length_685_cov_2.193262:1-685 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 34, Coverage: 6, minDepth: 5 [pilon] Confirmed 436 of 685 bases (63.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4268_length_685_cov_2.193262:1-685 [pilon] Processing NODE_14005_length_243_cov_14.155738:1-243 [pilon] NODE_15153_length_189_cov_6.647059:1-189 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 189 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15153_length_189_cov_6.647059:1-189 [pilon] Processing NODE_531_length_1880_cov_28.404207:1-1880 [pilon] NODE_5726_length_561_cov_20.990909:1-561 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 240, Coverage: 35, minDepth: 9 [pilon] Confirmed 394 of 561 bases (70.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5726_length_561_cov_20.990909:1-561 [pilon] Processing NODE_10335_length_312_cov_14.230366:1-312 [pilon] NODE_3094_length_854_cov_12.603001:1-854 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 219, Coverage: 21, minDepth: 5 [pilon] Confirmed 800 of 854 bases (93.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3094_length_854_cov_12.603001:1-854 [pilon] Processing NODE_13775_length_243_cov_15.852459:1-243 [pilon] NODE_12613_length_243_cov_27.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12613_length_243_cov_27.434426:1-243 [pilon] Processing NODE_1830_length_1135_cov_2.524655:1-1135 [pilon] NODE_8777_length_378_cov_19.649805:1-378 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 104, Coverage: 21, minDepth: 5 [pilon] Confirmed 287 of 378 bases (75.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8777_length_378_cov_19.649805:1-378 [pilon] Processing NODE_6554_length_500_cov_15.699208:1-500 [pilon] NODE_2775_length_913_cov_45.637626:1-913 log: [pilon] frags shovill.bam: coverage 101 [pilon] Total Reads: 823, Coverage: 101, minDepth: 25 [pilon] Confirmed 766 of 913 bases (83.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2775_length_913_cov_45.637626:1-913 [pilon] Processing NODE_12788_length_243_cov_25.114754:1-243 [pilon] NODE_6582_length_498_cov_10.427056:1-498 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 114, Coverage: 10, minDepth: 5 [pilon] Confirmed 342 of 498 bases (68.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6582_length_498_cov_10.427056:1-498 [pilon] Processing NODE_2542_length_958_cov_31.181601:1-958 [pilon] NODE_9128_length_360_cov_19.033473:1-360 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 100, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 360 bases (34.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9128_length_360_cov_19.033473:1-360 [pilon] Processing NODE_5896_length_548_cov_9.374707:1-548 [pilon] NODE_3646_length_762_cov_15.804992:1-762 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 221, Coverage: 20, minDepth: 5 [pilon] Confirmed 534 of 762 bases (70.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3646_length_762_cov_15.804992:1-762 [pilon] Processing NODE_11459_length_264_cov_26.860140:1-264 [pilon] NODE_6274_length_519_cov_25.763819:1-519 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 217, Coverage: 26, minDepth: 7 [pilon] Confirmed 307 of 519 bases (59.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6274_length_519_cov_25.763819:1-519 [pilon] Processing NODE_12583_length_243_cov_27.713115:1-243 [pilon] NODE_1740_length_1164_cov_18.877277:1-1164 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 518, Coverage: 32, minDepth: 8 [pilon] Confirmed 975 of 1164 bases (83.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1740_length_1164_cov_18.877277:1-1164 [pilon] Processing NODE_13050_length_243_cov_22.418033:1-243 [pilon] NODE_946_length_1531_cov_26.238298:1-1531 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 875, Coverage: 60, minDepth: 15 [pilon] Confirmed 1082 of 1531 bases (70.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_946_length_1531_cov_26.238298:1-1531 [pilon] Processing NODE_13720_length_243_cov_16.254098:1-243 [pilon] NODE_3753_length_747_cov_9.549521:1-747 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 160, Coverage: 15, minDepth: 5 [pilon] Confirmed 596 of 747 bases (79.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3753_length_747_cov_9.549521:1-747 [pilon] Processing NODE_6599_length_497_cov_31.859043:1-497 [pilon] NODE_7016_length_470_cov_59.266476:1-470 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 465, Coverage: 81, minDepth: 20 [pilon] Confirmed 409 of 470 bases (87.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7016_length_470_cov_59.266476:1-470 [pilon] Processing NODE_6630_length_495_cov_16.098930:1-495 [pilon] NODE_13160_length_243_cov_21.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13160_length_243_cov_21.450820:1-243 [pilon] Processing NODE_12168_length_243_cov_38.204918:1-243 [pilon] NODE_7545_length_441_cov_17.356250:1-441 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 123, Coverage: 23, minDepth: 6 [pilon] Confirmed 335 of 441 bases (75.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7545_length_441_cov_17.356250:1-441 [pilon] Processing NODE_2882_length_896_cov_5.948387:1-896 [pilon] NODE_2362_length_999_cov_1.986333:1-999 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 50, Coverage: 6, minDepth: 5 [pilon] Confirmed 486 of 999 bases (48.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2362_length_999_cov_1.986333:1-999 [pilon] Processing NODE_14996_length_243_cov_5.459016:1-243 [pilon] NODE_77_length_3246_cov_11.819840:1-3246 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 997, Coverage: 37, minDepth: 9 [pilon] Confirmed 2557 of 3246 bases (78.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_77_length_3246_cov_11.819840:1-3246 [pilon] Processing NODE_12083_length_244_cov_19.430894:1-244 [pilon] NODE_304_length_2236_cov_1.414657:1-2236 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 101, Coverage: 6, minDepth: 5 [pilon] Confirmed 1315 of 2236 bases (58.81%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_304_length_2236_cov_1.414657:1-2236 [pilon] Processing NODE_11702_length_255_cov_43.037313:1-255 [pilon] NODE_644_length_1754_cov_1.664421:1-1754 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 80, Coverage: 6, minDepth: 5 [pilon] Confirmed 1064 of 1754 bases (60.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_644_length_1754_cov_1.664421:1-1754 [pilon] Processing NODE_11432_length_267_cov_5.684932:1-267 [pilon] NODE_13246_length_243_cov_20.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13246_length_243_cov_20.680328:1-243 [pilon] Processing NODE_14032_length_243_cov_13.959016:1-243 [pilon] NODE_11472_length_264_cov_19.104895:1-264 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 59, Coverage: 5, minDepth: 5 [pilon] Confirmed 165 of 264 bases (62.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11472_length_264_cov_19.104895:1-264 [pilon] Processing NODE_6446_length_507_cov_17.406736:1-507 [pilon] NODE_13775_length_243_cov_15.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13775_length_243_cov_15.852459:1-243 [pilon] Processing NODE_3819_length_738_cov_25.823339:1-738 [pilon] NODE_6_length_6713_cov_43.613471:1-6713 log: [pilon] frags shovill.bam: coverage 125 [pilon] Total Reads: 6500, Coverage: 125, minDepth: 31 [pilon] Confirmed 6372 of 6713 bases (94.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6_length_6713_cov_43.613471:1-6713 [pilon] Processing NODE_4295_length_682_cov_2.146168:1-682 [pilon] NODE_13065_length_243_cov_22.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13065_length_243_cov_22.262295:1-243 [pilon] Processing NODE_13204_length_243_cov_21.049180:1-243 [pilon] NODE_14005_length_243_cov_14.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14005_length_243_cov_14.155738:1-243 [pilon] Processing NODE_11346_length_270_cov_15.906040:1-270 [pilon] NODE_531_length_1880_cov_28.404207:1-1880 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 1286, Coverage: 77, minDepth: 19 [pilon] Confirmed 1516 of 1880 bases (80.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_531_length_1880_cov_28.404207:1-1880 [pilon] Processing NODE_15224_length_144_cov_5.608696:1-144 [pilon] NODE_10335_length_312_cov_14.230366:1-312 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 54, Coverage: 6, minDepth: 5 [pilon] Confirmed 214 of 312 bases (68.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10335_length_312_cov_14.230366:1-312 [pilon] Processing NODE_5387_length_585_cov_21.172414:1-585 [pilon] NODE_9838_length_333_cov_10.485849:1-333 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 333 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9838_length_333_cov_10.485849:1-333 [pilon] Processing NODE_15084_length_231_cov_29.109091:1-231 [pilon] NODE_3219_length_830_cov_23.586742:1-830 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 376, Coverage: 41, minDepth: 10 [pilon] Confirmed 554 of 830 bases (66.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3219_length_830_cov_23.586742:1-830 [pilon] Processing NODE_12948_length_243_cov_23.450820:1-243 [pilon] NODE_11459_length_264_cov_26.860140:1-264 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 80, Coverage: 8, minDepth: 5 [pilon] Confirmed 217 of 264 bases (82.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11459_length_264_cov_26.860140:1-264 [pilon] Processing NODE_14848_length_243_cov_7.229508:1-243 [pilon] NODE_30_length_4619_cov_17.853490:1-4619 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 1823, Coverage: 51, minDepth: 13 [pilon] Confirmed 3628 of 4619 bases (78.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_30_length_4619_cov_17.853490:1-4619 [pilon] Processing NODE_13265_length_243_cov_20.459016:1-243 [pilon] NODE_13720_length_243_cov_16.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13720_length_243_cov_16.254098:1-243 [pilon] Processing NODE_2190_length_1037_cov_2.803493:1-1037 [pilon] NODE_1830_length_1135_cov_2.524655:1-1135 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 77, Coverage: 9, minDepth: 5 [pilon] Confirmed 878 of 1135 bases (77.36%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1830_length_1135_cov_2.524655:1-1135 [pilon] Processing NODE_2476_length_971_cov_7.885882:1-971 [pilon] NODE_6630_length_495_cov_16.098930:1-495 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 145, Coverage: 5, minDepth: 5 [pilon] Confirmed 263 of 495 bases (53.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6630_length_495_cov_16.098930:1-495 [pilon] Processing NODE_12936_length_243_cov_23.573770:1-243 [pilon] NODE_6554_length_500_cov_15.699208:1-500 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 130, Coverage: 19, minDepth: 5 [pilon] Confirmed 342 of 500 bases (68.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6554_length_500_cov_15.699208:1-500 [pilon] Processing NODE_12359_length_243_cov_31.852459:1-243 [pilon] NODE_5896_length_548_cov_9.374707:1-548 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 83, Coverage: 14, minDepth: 5 [pilon] Confirmed 424 of 548 bases (77.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5896_length_548_cov_9.374707:1-548 [pilon] Processing NODE_7868_length_424_cov_2.191419:1-424 [pilon] NODE_12788_length_243_cov_25.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12788_length_243_cov_25.114754:1-243 [pilon] Processing NODE_2047_length_1073_cov_22.086134:1-1073 [pilon] NODE_12583_length_243_cov_27.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12583_length_243_cov_27.713115:1-243 [pilon] Processing NODE_15028_length_243_cov_5.098361:1-243 [pilon] NODE_13050_length_243_cov_22.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13050_length_243_cov_22.418033:1-243 [pilon] Processing NODE_11527_length_263_cov_9.105634:1-263 [pilon] NODE_6599_length_497_cov_31.859043:1-497 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 269, Coverage: 40, minDepth: 10 [pilon] Confirmed 410 of 497 bases (82.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6599_length_497_cov_31.859043:1-497 [pilon] Processing NODE_553_length_1856_cov_15.911239:1-1856 [pilon] NODE_2542_length_958_cov_31.181601:1-958 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 561, Coverage: 76, minDepth: 19 [pilon] Confirmed 591 of 958 bases (61.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2542_length_958_cov_31.181601:1-958 [pilon] Processing NODE_12261_length_243_cov_34.262295:1-243 [pilon] NODE_3819_length_738_cov_25.823339:1-738 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 488, Coverage: 62, minDepth: 16 [pilon] Confirmed 445 of 738 bases (60.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3819_length_738_cov_25.823339:1-738 [pilon] Processing NODE_14593_length_243_cov_9.450820:1-243 [pilon] NODE_12168_length_243_cov_38.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12168_length_243_cov_38.204918:1-243 [pilon] Processing NODE_4254_length_687_cov_22.888693:1-687 [pilon] NODE_14996_length_243_cov_5.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14996_length_243_cov_5.459016:1-243 [pilon] Processing NODE_12817_length_243_cov_24.868852:1-243 [pilon] NODE_2882_length_896_cov_5.948387:1-896 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 166, Coverage: 14, minDepth: 5 [pilon] Confirmed 742 of 896 bases (82.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2882_length_896_cov_5.948387:1-896 [pilon] Processing NODE_12285_length_243_cov_33.598361:1-243 [pilon] NODE_11432_length_267_cov_5.684932:1-267 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 18, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11432_length_267_cov_5.684932:1-267 [pilon] Processing NODE_14691_length_243_cov_8.655738:1-243 [pilon] NODE_14032_length_243_cov_13.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14032_length_243_cov_13.959016:1-243 [pilon] Processing NODE_13402_length_243_cov_19.295082:1-243 [pilon] NODE_12083_length_244_cov_19.430894:1-244 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 52, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12083_length_244_cov_19.430894:1-244 [pilon] Processing NODE_7039_length_468_cov_25.953890:1-468 [pilon] NODE_11702_length_255_cov_43.037313:1-255 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 119, Coverage: 5, minDepth: 5 [pilon] Confirmed 131 of 255 bases (51.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11702_length_255_cov_43.037313:1-255 [pilon] Processing NODE_4329_length_678_cov_2.095153:1-678 [pilon] NODE_6446_length_507_cov_17.406736:1-507 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 143, Coverage: 17, minDepth: 5 [pilon] Confirmed 349 of 507 bases (68.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6446_length_507_cov_17.406736:1-507 [pilon] Processing NODE_3035_length_867_cov_5.313673:1-867 [pilon] NODE_4295_length_682_cov_2.146168:1-682 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 34, Coverage: 6, minDepth: 5 [pilon] Confirmed 348 of 682 bases (51.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4295_length_682_cov_2.146168:1-682 [pilon] Processing NODE_8404_length_399_cov_21.697842:1-399 [pilon] NODE_13204_length_243_cov_21.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13204_length_243_cov_21.049180:1-243 [pilon] Processing NODE_2730_length_922_cov_35.081149:1-922 [pilon] NODE_14848_length_243_cov_7.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14848_length_243_cov_7.229508:1-243 [pilon] Processing NODE_790_length_1630_cov_11.119947:1-1630 [pilon] NODE_11346_length_270_cov_15.906040:1-270 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 44, Coverage: 3, minDepth: 5 [pilon] Confirmed 92 of 270 bases (34.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11346_length_270_cov_15.906040:1-270 [pilon] Processing NODE_4011_length_714_cov_21.249578:1-714 [pilon] NODE_15224_length_144_cov_5.608696:1-144 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 144 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15224_length_144_cov_5.608696:1-144 [pilon] Processing NODE_9471_length_347_cov_22.057522:1-347 [pilon] NODE_2190_length_1037_cov_2.803493:1-1037 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 63, Coverage: 8, minDepth: 5 [pilon] Confirmed 567 of 1037 bases (54.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2190_length_1037_cov_2.803493:1-1037 [pilon] Processing NODE_8821_length_375_cov_37.118110:1-375 [pilon] NODE_12936_length_243_cov_23.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12936_length_243_cov_23.573770:1-243 [pilon] Processing NODE_7328_length_452_cov_1.543807:1-452 [pilon] NODE_12948_length_243_cov_23.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12948_length_243_cov_23.450820:1-243 [pilon] Processing NODE_9858_length_332_cov_5.981043:1-332 [pilon] NODE_15084_length_231_cov_29.109091:1-231 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 76, Coverage: 6, minDepth: 5 [pilon] Confirmed 164 of 231 bases (71.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15084_length_231_cov_29.109091:1-231 [pilon] Processing NODE_10899_length_288_cov_20.239521:1-288 [pilon] NODE_5387_length_585_cov_21.172414:1-585 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 202, Coverage: 30, minDepth: 8 [pilon] Confirmed 450 of 585 bases (76.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5387_length_585_cov_21.172414:1-585 [pilon] Processing NODE_9588_length_342_cov_19.457014:1-342 [pilon] NODE_14593_length_243_cov_9.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14593_length_243_cov_9.450820:1-243 [pilon] Processing NODE_1466_length_1276_cov_1.639827:1-1276 [pilon] NODE_13265_length_243_cov_20.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13265_length_243_cov_20.459016:1-243 [pilon] Processing NODE_3346_length_806_cov_11.843796:1-806 [pilon] NODE_12359_length_243_cov_31.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12359_length_243_cov_31.852459:1-243 [pilon] NODE_15028_length_243_cov_5.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_5680_length_564_cov_22.146727:1-564 [pilon] Finished processing NODE_15028_length_243_cov_5.098361:1-243 [pilon] Processing NODE_6579_length_498_cov_18.302387:1-498 [pilon] NODE_2476_length_971_cov_7.885882:1-971 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 234, Coverage: 31, minDepth: 8 [pilon] Confirmed 625 of 971 bases (64.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2476_length_971_cov_7.885882:1-971 [pilon] Processing NODE_12940_length_243_cov_23.557377:1-243 [pilon] NODE_7868_length_424_cov_2.191419:1-424 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 23, Coverage: 6, minDepth: 5 [pilon] Confirmed 274 of 424 bases (64.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7868_length_424_cov_2.191419:1-424 [pilon] Processing NODE_9677_length_339_cov_13.119266:1-339 [pilon] NODE_2047_length_1073_cov_22.086134:1-1073 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 488, Coverage: 47, minDepth: 12 [pilon] Confirmed 903 of 1073 bases (84.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2047_length_1073_cov_22.086134:1-1073 [pilon] Processing NODE_9114_length_360_cov_36.125523:1-360 [pilon] NODE_11527_length_263_cov_9.105634:1-263 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 263 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11527_length_263_cov_9.105634:1-263 [pilon] Processing NODE_6145_length_528_cov_28.125307:1-528 [pilon] NODE_12261_length_243_cov_34.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12261_length_243_cov_34.262295:1-243 [pilon] Processing NODE_8869_length_373_cov_41.047619:1-373 [pilon] NODE_553_length_1856_cov_15.911239:1-1856 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 758, Coverage: 52, minDepth: 13 [pilon] Confirmed 1479 of 1856 bases (79.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_553_length_1856_cov_15.911239:1-1856 [pilon] Processing NODE_8432_length_398_cov_18.422383:1-398 [pilon] NODE_12817_length_243_cov_24.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12817_length_243_cov_24.868852:1-243 [pilon] Processing NODE_6052_length_536_cov_2.272289:1-536 [pilon] NODE_790_length_1630_cov_11.119947:1-1630 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 436, Coverage: 25, minDepth: 6 [pilon] Confirmed 1418 of 1630 bases (86.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_790_length_1630_cov_11.119947:1-1630 [pilon] Processing NODE_13321_length_243_cov_20.073770:1-243 [pilon] NODE_12285_length_243_cov_33.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 90, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12285_length_243_cov_33.598361:1-243 [pilon] Processing NODE_7162_length_462_cov_1.970674:1-462 [pilon] NODE_13402_length_243_cov_19.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13402_length_243_cov_19.295082:1-243 [pilon] Processing NODE_11485_length_264_cov_15.160839:1-264 [pilon] NODE_14691_length_243_cov_8.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14691_length_243_cov_8.655738:1-243 [pilon] Processing NODE_9779_length_335_cov_33.397196:1-335 [pilon] NODE_8821_length_375_cov_37.118110:1-375 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 194, Coverage: 17, minDepth: 5 [pilon] Confirmed 243 of 375 bases (64.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7039_length_468_cov_25.953890:1-468 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 214, Coverage: 33, minDepth: 8 [pilon] Confirmed 376 of 468 bases (80.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7039_length_468_cov_25.953890:1-468 [pilon] Processing NODE_14859_length_243_cov_7.065574:1-243 [pilon] Finished processing NODE_8821_length_375_cov_37.118110:1-375 [pilon] Processing NODE_1844_length_1131_cov_33.342574:1-1131 [pilon] NODE_4254_length_687_cov_22.888693:1-687 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 303, Coverage: 24, minDepth: 6 [pilon] Confirmed 409 of 687 bases (59.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4254_length_687_cov_22.888693:1-687 [pilon] Processing NODE_12740_length_243_cov_25.696721:1-243 [pilon] NODE_4329_length_678_cov_2.095153:1-678 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 31, Coverage: 6, minDepth: 5 [pilon] Confirmed 272 of 678 bases (40.12%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4329_length_678_cov_2.095153:1-678 [pilon] Processing NODE_6584_length_498_cov_9.567639:1-498 [pilon] NODE_7328_length_452_cov_1.543807:1-452 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 252 of 452 bases (55.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7328_length_452_cov_1.543807:1-452 [pilon] Processing NODE_3917_length_725_cov_41.334437:1-725 [pilon] NODE_8404_length_399_cov_21.697842:1-399 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 132, Coverage: 14, minDepth: 5 [pilon] Confirmed 243 of 399 bases (60.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8404_length_399_cov_21.697842:1-399 [pilon] Processing NODE_12700_length_243_cov_26.204918:1-243 [pilon] NODE_3035_length_867_cov_5.313673:1-867 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 94, Coverage: 14, minDepth: 5 [pilon] Confirmed 708 of 867 bases (81.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3035_length_867_cov_5.313673:1-867 [pilon] Processing NODE_3049_length_863_cov_23.688679:1-863 [pilon] NODE_4011_length_714_cov_21.249578:1-714 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 319, Coverage: 39, minDepth: 10 [pilon] Confirmed 603 of 714 bases (84.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4011_length_714_cov_21.249578:1-714 [pilon] Processing NODE_14033_length_243_cov_13.959016:1-243 [pilon] NODE_1466_length_1276_cov_1.639827:1-1276 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 52, Coverage: 5, minDepth: 5 [pilon] Confirmed 596 of 1276 bases (46.71%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1466_length_1276_cov_1.639827:1-1276 [pilon] Processing NODE_11671_length_258_cov_8.576642:1-258 [pilon] NODE_2730_length_922_cov_35.081149:1-922 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 650, Coverage: 57, minDepth: 14 [pilon] Confirmed 777 of 922 bases (84.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2730_length_922_cov_35.081149:1-922 [pilon] Processing NODE_13418_length_243_cov_19.122951:1-243 [pilon] NODE_9471_length_347_cov_22.057522:1-347 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 113, Coverage: 14, minDepth: 5 [pilon] Confirmed 229 of 347 bases (65.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9471_length_347_cov_22.057522:1-347 [pilon] Processing NODE_7746_length_430_cov_1.278317:1-430 [pilon] NODE_9858_length_332_cov_5.981043:1-332 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 180 of 332 bases (54.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9858_length_332_cov_5.981043:1-332 [pilon] Processing NODE_7022_length_470_cov_19.564470:1-470 [pilon] NODE_10899_length_288_cov_20.239521:1-288 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 72, Coverage: 7, minDepth: 5 [pilon] Confirmed 164 of 288 bases (56.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10899_length_288_cov_20.239521:1-288 [pilon] Processing NODE_6310_length_517_cov_2.277778:1-517 [pilon] NODE_9588_length_342_cov_19.457014:1-342 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 80, Coverage: 8, minDepth: 5 [pilon] Confirmed 220 of 342 bases (64.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9588_length_342_cov_19.457014:1-342 [pilon] Processing NODE_2819_length_906_cov_20.461146:1-906 [pilon] NODE_3346_length_806_cov_11.843796:1-806 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 187, Coverage: 20, minDepth: 5 [pilon] Confirmed 694 of 806 bases (86.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3346_length_806_cov_11.843796:1-806 [pilon] Processing NODE_10326_length_312_cov_20.225131:1-312 [pilon] NODE_13321_length_243_cov_20.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13321_length_243_cov_20.073770:1-243 [pilon] Processing NODE_1113_length_1436_cov_8.315589:1-1436 [pilon] NODE_5680_length_564_cov_22.146727:1-564 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 226, Coverage: 21, minDepth: 5 [pilon] Confirmed 401 of 564 bases (71.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5680_length_564_cov_22.146727:1-564 [pilon] Processing NODE_12600_length_243_cov_27.573770:1-243 [pilon] NODE_6579_length_498_cov_18.302387:1-498 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 152, Coverage: 21, minDepth: 5 [pilon] Confirmed 354 of 498 bases (71.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6579_length_498_cov_18.302387:1-498 [pilon] Processing NODE_6460_length_506_cov_41.397403:1-506 [pilon] NODE_12940_length_243_cov_23.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12940_length_243_cov_23.557377:1-243 [pilon] Processing NODE_15250_length_126_cov_12.800000:1-126 [pilon] NODE_9677_length_339_cov_13.119266:1-339 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 61, Coverage: 5, minDepth: 5 [pilon] Confirmed 168 of 339 bases (49.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9677_length_339_cov_13.119266:1-339 [pilon] NODE_1844_length_1131_cov_33.342574:1-1131 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 844, Coverage: 59, minDepth: 15 [pilon] Confirmed 975 of 1131 bases (86.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1844_length_1131_cov_33.342574:1-1131 [pilon] Processing NODE_6308_length_517_cov_4.537879:1-517 [pilon] Processing NODE_11165_length_276_cov_33.148387:1-276 [pilon] NODE_9114_length_360_cov_36.125523:1-360 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 143, Coverage: 4, minDepth: 5 [pilon] Confirmed 139 of 360 bases (38.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9114_length_360_cov_36.125523:1-360 [pilon] Processing NODE_12512_length_243_cov_28.877049:1-243 [pilon] NODE_3917_length_725_cov_41.334437:1-725 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 583, Coverage: 78, minDepth: 20 [pilon] Confirmed 659 of 725 bases (90.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3917_length_725_cov_41.334437:1-725 [pilon] Processing NODE_6279_length_519_cov_17.195980:1-519 [pilon] NODE_6145_length_528_cov_28.125307:1-528 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 280, Coverage: 35, minDepth: 9 [pilon] Confirmed 425 of 528 bases (80.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6145_length_528_cov_28.125307:1-528 [pilon] Processing NODE_4169_length_697_cov_3.680556:1-697 [pilon] NODE_8432_length_398_cov_18.422383:1-398 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 116, Coverage: 17, minDepth: 5 [pilon] Confirmed 278 of 398 bases (69.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8432_length_398_cov_18.422383:1-398 [pilon] Processing NODE_4910_length_625_cov_17.503968:1-625 [pilon] NODE_8869_length_373_cov_41.047619:1-373 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 245, Coverage: 39, minDepth: 10 [pilon] Confirmed 327 of 373 bases (87.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8869_length_373_cov_41.047619:1-373 [pilon] Processing NODE_9207_length_357_cov_19.169492:1-357 [pilon] NODE_11671_length_258_cov_8.576642:1-258 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 36, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11671_length_258_cov_8.576642:1-258 [pilon] Processing NODE_10194_length_318_cov_8.670051:1-318 [pilon] NODE_12740_length_243_cov_25.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7162_length_462_cov_1.970674:1-462 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 168 of 462 bases (36.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12740_length_243_cov_25.696721:1-243 [pilon] Finished processing NODE_7162_length_462_cov_1.970674:1-462 [pilon] Processing NODE_4069_length_708_cov_23.930153:1-708 [pilon] Processing NODE_10320_length_312_cov_21.853403:1-312 [pilon] NODE_9779_length_335_cov_33.397196:1-335 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 176, Coverage: 25, minDepth: 6 [pilon] Confirmed 308 of 335 bases (91.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9779_length_335_cov_33.397196:1-335 [pilon] Processing NODE_4484_length_663_cov_13.182657:1-663 [pilon] NODE_11485_length_264_cov_15.160839:1-264 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 54, Coverage: 6, minDepth: 5 [pilon] Confirmed 190 of 264 bases (71.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11485_length_264_cov_15.160839:1-264 [pilon] Processing NODE_10271_length_315_cov_6.525773:1-315 [pilon] NODE_6052_length_536_cov_2.272289:1-536 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 350 of 536 bases (65.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6052_length_536_cov_2.272289:1-536 [pilon] Processing NODE_10143_length_320_cov_17.728643:1-320 [pilon] NODE_14859_length_243_cov_7.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14859_length_243_cov_7.065574:1-243 [pilon] Processing NODE_2920_length_889_cov_2.691406:1-889 [pilon] NODE_6584_length_498_cov_9.567639:1-498 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 85, Coverage: 13, minDepth: 5 [pilon] Confirmed 382 of 498 bases (76.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6584_length_498_cov_9.567639:1-498 [pilon] Processing NODE_7512_length_443_cov_0.344720:1-443 [pilon] NODE_12700_length_243_cov_26.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12700_length_243_cov_26.204918:1-243 [pilon] Processing NODE_4694_length_644_cov_1.374761:1-644 [pilon] NODE_14033_length_243_cov_13.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14033_length_243_cov_13.959016:1-243 [pilon] Processing NODE_9212_length_357_cov_18.436441:1-357 [pilon] NODE_13418_length_243_cov_19.122951:1-243 log: [pilon] NODE_3049_length_863_cov_23.688679:1-863 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 392, Coverage: 53, minDepth: 13 [pilon] Confirmed 564 of 863 bases (65.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3049_length_863_cov_23.688679:1-863 [pilon] Finished processing NODE_13418_length_243_cov_19.122951:1-243 [pilon] Processing NODE_5934_length_545_cov_38.870283:1-545 [pilon] Processing NODE_9802_length_334_cov_8.314554:1-334 [pilon] NODE_1113_length_1436_cov_8.315589:1-1436 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 313, Coverage: 23, minDepth: 6 [pilon] Confirmed 994 of 1436 bases (69.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1113_length_1436_cov_8.315589:1-1436 [pilon] Processing NODE_3694_length_755_cov_20.197161:1-755 [pilon] NODE_7746_length_430_cov_1.278317:1-430 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 158 of 430 bases (36.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7746_length_430_cov_1.278317:1-430 [pilon] Processing NODE_8511_length_393_cov_21.033088:1-393 [pilon] NODE_6310_length_517_cov_2.277778:1-517 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 31, Coverage: 8, minDepth: 5 [pilon] Confirmed 362 of 517 bases (70.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6310_length_517_cov_2.277778:1-517 [pilon] Processing NODE_11227_length_274_cov_19.640523:1-274 [pilon] NODE_2819_length_906_cov_20.461146:1-906 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 354, Coverage: 40, minDepth: 10 [pilon] Confirmed 791 of 906 bases (87.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2819_length_906_cov_20.461146:1-906 [pilon] Processing NODE_14606_length_243_cov_9.352459:1-243 [pilon] NODE_7022_length_470_cov_19.564470:1-470 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 186, Coverage: 21, minDepth: 5 [pilon] Confirmed 437 of 470 bases (92.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7022_length_470_cov_19.564470:1-470 [pilon] Processing NODE_3966_length_719_cov_3.073579:1-719 [pilon] NODE_11165_length_276_cov_33.148387:1-276 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 91, Coverage: 12, minDepth: 5 [pilon] Confirmed 235 of 276 bases (85.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11165_length_276_cov_33.148387:1-276 [pilon] Processing NODE_11363_length_269_cov_19.412162:1-269 [pilon] NODE_6279_length_519_cov_17.195980:1-519 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 173, Coverage: 16, minDepth: 5 [pilon] Confirmed 319 of 519 bases (61.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6279_length_519_cov_17.195980:1-519 [pilon] Processing NODE_3312_length_813_cov_2.578035:1-813 [pilon] NODE_10194_length_318_cov_8.670051:1-318 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 57, Coverage: 3, minDepth: 5 [pilon] Confirmed 36 of 318 bases (11.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10194_length_318_cov_8.670051:1-318 [pilon] Processing NODE_4775_length_637_cov_11.350775:1-637 [pilon] NODE_12600_length_243_cov_27.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12600_length_243_cov_27.573770:1-243 [pilon] Processing NODE_8633_length_386_cov_32.913208:1-386 [pilon] NODE_10326_length_312_cov_20.225131:1-312 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 96, Coverage: 7, minDepth: 5 [pilon] Confirmed 167 of 312 bases (53.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10326_length_312_cov_20.225131:1-312 [pilon] Processing NODE_5902_length_548_cov_0.882904:1-548 [pilon] NODE_15250_length_126_cov_12.800000:1-126 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 126 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15250_length_126_cov_12.800000:1-126 [pilon] Processing NODE_3134_length_845_cov_13.023481:1-845 [pilon] NODE_6460_length_506_cov_41.397403:1-506 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 337, Coverage: 43, minDepth: 11 [pilon] Confirmed 431 of 506 bases (85.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6460_length_506_cov_41.397403:1-506 [pilon] Processing NODE_4212_length_692_cov_21.765324:1-692 [pilon] NODE_6308_length_517_cov_4.537879:1-517 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 35, Coverage: 9, minDepth: 5 [pilon] Confirmed 315 of 517 bases (60.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6308_length_517_cov_4.537879:1-517 [pilon] Processing NODE_1692_length_1185_cov_3.912594:1-1185 [pilon] NODE_4169_length_697_cov_3.680556:1-697 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 46, Coverage: 9, minDepth: 5 [pilon] Confirmed 371 of 697 bases (53.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4169_length_697_cov_3.680556:1-697 [pilon] Processing NODE_7518_length_442_cov_22.239875:1-442 [pilon] NODE_7512_length_443_cov_0.344720:1-443 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 443 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7512_length_443_cov_0.344720:1-443 [pilon] Processing NODE_13612_length_243_cov_17.377049:1-243 [pilon] NODE_12512_length_243_cov_28.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12512_length_243_cov_28.877049:1-243 [pilon] Processing NODE_4222_length_691_cov_23.015789:1-691 [pilon] NODE_10271_length_315_cov_6.525773:1-315 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10271_length_315_cov_6.525773:1-315 [pilon] Processing NODE_5305_length_592_cov_13.588110:1-592 [pilon] NODE_4910_length_625_cov_17.503968:1-625 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 222, Coverage: 20, minDepth: 5 [pilon] Confirmed 435 of 625 bases (69.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4910_length_625_cov_17.503968:1-625 [pilon] Processing NODE_10241_length_315_cov_18.716495:1-315 [pilon] NODE_9207_length_357_cov_19.169492:1-357 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 103, Coverage: 8, minDepth: 5 [pilon] Confirmed 192 of 357 bases (53.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9207_length_357_cov_19.169492:1-357 [pilon] Processing NODE_1225_length_1378_cov_13.968178:1-1378 [pilon] NODE_10320_length_312_cov_21.853403:1-312 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 91, Coverage: 14, minDepth: 5 [pilon] Confirmed 240 of 312 bases (76.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10320_length_312_cov_21.853403:1-312 [pilon] Processing NODE_5891_length_548_cov_31.309133:1-548 [pilon] NODE_4069_length_708_cov_23.930153:1-708 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 330, Coverage: 33, minDepth: 8 [pilon] Confirmed 579 of 708 bases (81.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4069_length_708_cov_23.930153:1-708 [pilon] Processing NODE_8555_length_390_cov_24.215613:1-390 [pilon] NODE_4484_length_663_cov_13.182657:1-663 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 194, Coverage: 22, minDepth: 6 [pilon] Confirmed 529 of 663 bases (79.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4484_length_663_cov_13.182657:1-663 [pilon] Processing NODE_6587_length_498_cov_2.212202:1-498 [pilon] NODE_10143_length_320_cov_17.728643:1-320 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 59, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 320 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10143_length_320_cov_17.728643:1-320 [pilon] Processing NODE_2503_length_967_cov_6.871158:1-967 [pilon] NODE_3694_length_755_cov_20.197161:1-755 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 334, Coverage: 38, minDepth: 10 [pilon] Confirmed 630 of 755 bases (83.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3694_length_755_cov_20.197161:1-755 [pilon] Processing NODE_46_length_3797_cov_15.596028:1-3797 [pilon] NODE_2920_length_889_cov_2.691406:1-889 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 54, Coverage: 8, minDepth: 5 [pilon] Confirmed 563 of 889 bases (63.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2920_length_889_cov_2.691406:1-889 [pilon] Processing NODE_3720_length_752_cov_10.576862:1-752 [pilon] NODE_9802_length_334_cov_8.314554:1-334 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 28, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 334 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9802_length_334_cov_8.314554:1-334 [pilon] Processing NODE_11099_length_279_cov_26.449367:1-279 [pilon] NODE_9212_length_357_cov_18.436441:1-357 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 99, Coverage: 15, minDepth: 5 [pilon] Confirmed 270 of 357 bases (75.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9212_length_357_cov_18.436441:1-357 [pilon] Processing NODE_9308_length_354_cov_12.570815:1-354 [pilon] NODE_5934_length_545_cov_38.870283:1-545 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 371, Coverage: 59, minDepth: 15 [pilon] Confirmed 479 of 545 bases (87.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5934_length_545_cov_38.870283:1-545 [pilon] Processing NODE_5346_length_589_cov_1.258547:1-589 [pilon] NODE_4694_length_644_cov_1.374761:1-644 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 329 of 644 bases (51.09%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4694_length_644_cov_1.374761:1-644 [pilon] Processing NODE_944_length_1533_cov_12.982295:1-1533 [pilon] NODE_11227_length_274_cov_19.640523:1-274 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 59, Coverage: 6, minDepth: 5 [pilon] Confirmed 158 of 274 bases (57.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11227_length_274_cov_19.640523:1-274 [pilon] Processing NODE_5200_length_601_cov_63.800000:1-601 [pilon] NODE_3312_length_813_cov_2.578035:1-813 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 45, Coverage: 7, minDepth: 5 [pilon] Confirmed 502 of 813 bases (61.75%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3312_length_813_cov_2.578035:1-813 [pilon] Processing NODE_7324_length_452_cov_13.706949:1-452 [pilon] NODE_14606_length_243_cov_9.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14606_length_243_cov_9.352459:1-243 [pilon] Processing NODE_2517_length_964_cov_4.255042:1-964 [pilon] NODE_4775_length_637_cov_11.350775:1-637 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 114, Coverage: 12, minDepth: 5 [pilon] Confirmed 410 of 637 bases (64.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4775_length_637_cov_11.350775:1-637 [pilon] Processing NODE_14904_length_243_cov_6.688525:1-243 [pilon] NODE_8511_length_393_cov_21.033088:1-393 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 115, Coverage: 8, minDepth: 5 [pilon] Confirmed 231 of 393 bases (58.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8511_length_393_cov_21.033088:1-393 [pilon] Processing NODE_6722_length_489_cov_2.760870:1-489 [pilon] NODE_3966_length_719_cov_3.073579:1-719 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 49, Coverage: 9, minDepth: 5 [pilon] Confirmed 448 of 719 bases (62.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3966_length_719_cov_3.073579:1-719 [pilon] Processing NODE_1544_length_1243_cov_1.309269:1-1243 [pilon] NODE_11363_length_269_cov_19.412162:1-269 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 151 of 269 bases (56.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11363_length_269_cov_19.412162:1-269 [pilon] Processing NODE_2866_length_899_cov_27.895887:1-899 [pilon] NODE_13612_length_243_cov_17.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13612_length_243_cov_17.377049:1-243 [pilon] Processing NODE_10486_length_305_cov_40.717391:1-305 [pilon] NODE_8633_length_386_cov_32.913208:1-386 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 231, Coverage: 30, minDepth: 8 [pilon] Confirmed 327 of 386 bases (84.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8633_length_386_cov_32.913208:1-386 [pilon] Processing NODE_7601_length_438_cov_0.656151:1-438 [pilon] NODE_5902_length_548_cov_0.882904:1-548 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 25, Coverage: 3, minDepth: 5 [pilon] Confirmed 53 of 548 bases (9.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5902_length_548_cov_0.882904:1-548 [pilon] Processing NODE_8782_length_378_cov_16.591440:1-378 [pilon] NODE_3134_length_845_cov_13.023481:1-845 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 228, Coverage: 29, minDepth: 7 [pilon] Confirmed 545 of 845 bases (64.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3134_length_845_cov_13.023481:1-845 [pilon] Processing NODE_11812_length_252_cov_21.450382:1-252 [pilon] NODE_4212_length_692_cov_21.765324:1-692 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 277, Coverage: 23, minDepth: 6 [pilon] Confirmed 537 of 692 bases (77.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4212_length_692_cov_21.765324:1-692 [pilon] Processing NODE_1117_length_1432_cov_3.008391:1-1432 [pilon] NODE_7518_length_442_cov_22.239875:1-442 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 157, Coverage: 21, minDepth: 5 [pilon] Confirmed 377 of 442 bases (85.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7518_length_442_cov_22.239875:1-442 [pilon] Processing NODE_10369_length_310_cov_9.566138:1-310 [pilon] NODE_1692_length_1185_cov_3.912594:1-1185 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 128, Coverage: 14, minDepth: 5 [pilon] Confirmed 943 of 1185 bases (79.58%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1692_length_1185_cov_3.912594:1-1185 [pilon] Processing NODE_8214_length_408_cov_3.209059:1-408 [pilon] NODE_4222_length_691_cov_23.015789:1-691 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 265, Coverage: 36, minDepth: 9 [pilon] Confirmed 624 of 691 bases (90.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4222_length_691_cov_23.015789:1-691 [pilon] Processing NODE_3218_length_830_cov_25.392102:1-830 [pilon] NODE_46_length_3797_cov_15.596028:1-3797 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 1436, Coverage: 35, minDepth: 9 [pilon] Confirmed 3418 of 3797 bases (90.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_46_length_3797_cov_15.596028:1-3797 [pilon] Processing NODE_4885_length_628_cov_2.232742:1-628 [pilon] NODE_10241_length_315_cov_18.716495:1-315 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 89, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 315 bases (47.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10241_length_315_cov_18.716495:1-315 [pilon] Processing NODE_5337_length_590_cov_4.620469:1-590 [pilon] NODE_5305_length_592_cov_13.588110:1-592 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 150, Coverage: 26, minDepth: 7 [pilon] Confirmed 454 of 592 bases (76.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5305_length_592_cov_13.588110:1-592 [pilon] Processing NODE_9322_length_353_cov_56.418103:1-353 [pilon] NODE_8555_length_390_cov_24.215613:1-390 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 156, Coverage: 28, minDepth: 7 [pilon] Confirmed 333 of 390 bases (85.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8555_length_390_cov_24.215613:1-390 [pilon] Processing NODE_6721_length_489_cov_4.100543:1-489 [pilon] NODE_5891_length_548_cov_31.309133:1-548 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 335, Coverage: 49, minDepth: 12 [pilon] Confirmed 400 of 548 bases (72.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5891_length_548_cov_31.309133:1-548 [pilon] Processing NODE_9500_length_345_cov_29.379464:1-345 [pilon] NODE_6587_length_498_cov_2.212202:1-498 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 182 of 498 bases (36.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6587_length_498_cov_2.212202:1-498 [pilon] Processing NODE_1875_length_1121_cov_11.689000:1-1121 [pilon] NODE_7324_length_452_cov_13.706949:1-452 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 109, Coverage: 13, minDepth: 5 [pilon] Confirmed 319 of 452 bases (70.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7324_length_452_cov_13.706949:1-452 [pilon] Processing NODE_1932_length_1103_cov_3.058045:1-1103 [pilon] NODE_14904_length_243_cov_6.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14904_length_243_cov_6.688525:1-243 [pilon] Processing NODE_2425_length_984_cov_55.885284:1-984 [pilon] NODE_1225_length_1378_cov_13.968178:1-1378 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 436, Coverage: 26, minDepth: 7 [pilon] Confirmed 1286 of 1378 bases (93.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1225_length_1378_cov_13.968178:1-1378 [pilon] Processing NODE_15156_length_186_cov_15.430769:1-186 [pilon] NODE_2503_length_967_cov_6.871158:1-967 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 178, Coverage: 14, minDepth: 5 [pilon] Confirmed 757 of 967 bases (78.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2503_length_967_cov_6.871158:1-967 [pilon] Processing NODE_12452_length_243_cov_29.868852:1-243 [pilon] NODE_10486_length_305_cov_40.717391:1-305 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 183, Coverage: 20, minDepth: 5 [pilon] Confirmed 273 of 305 bases (89.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10486_length_305_cov_40.717391:1-305 [pilon] Processing NODE_2095_length_1061_cov_13.442553:1-1061 [pilon] NODE_9308_length_354_cov_12.570815:1-354 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 64, Coverage: 4, minDepth: 5 [pilon] Confirmed 157 of 354 bases (44.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9308_length_354_cov_12.570815:1-354 [pilon] Processing NODE_1667_length_1194_cov_14.492078:1-1194 [pilon] NODE_3720_length_752_cov_10.576862:1-752 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 166, Coverage: 29, minDepth: 7 [pilon] Confirmed 567 of 752 bases (75.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3720_length_752_cov_10.576862:1-752 [pilon] Processing NODE_9799_length_334_cov_14.690141:1-334 [pilon] NODE_11099_length_279_cov_26.449367:1-279 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 93, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 279 bases (46.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11099_length_279_cov_26.449367:1-279 [pilon] Processing NODE_14577_length_243_cov_9.614754:1-243 [pilon] NODE_5346_length_589_cov_1.258547:1-589 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 159 of 589 bases (26.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5346_length_589_cov_1.258547:1-589 [pilon] Processing NODE_12319_length_243_cov_32.688525:1-243 [pilon] NODE_6722_length_489_cov_2.760870:1-489 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 283 of 489 bases (57.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6722_length_489_cov_2.760870:1-489 [pilon] Processing NODE_11232_length_274_cov_12.986928:1-274 [pilon] NODE_5200_length_601_cov_63.800000:1-601 log: [pilon] frags shovill.bam: coverage 116 [pilon] Total Reads: 705, Coverage: 116, minDepth: 29 [pilon] Confirmed 514 of 601 bases (85.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5200_length_601_cov_63.800000:1-601 [pilon] Processing NODE_7723_length_431_cov_36.264516:1-431 [pilon] NODE_944_length_1533_cov_12.982295:1-1533 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 497, Coverage: 32, minDepth: 8 [pilon] Confirmed 1321 of 1533 bases (86.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_944_length_1533_cov_12.982295:1-1533 [pilon] Processing NODE_11799_length_252_cov_31.847328:1-252 [pilon] NODE_1544_length_1243_cov_1.309269:1-1243 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 45, Coverage: 4, minDepth: 5 [pilon] Confirmed 545 of 1243 bases (43.85%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1544_length_1243_cov_1.309269:1-1243 [pilon] Processing NODE_14314_length_243_cov_11.754098:1-243 [pilon] NODE_2517_length_964_cov_4.255042:1-964 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 100, Coverage: 11, minDepth: 5 [pilon] Confirmed 463 of 964 bases (48.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2517_length_964_cov_4.255042:1-964 [pilon] Processing NODE_6007_length_540_cov_14.181384:1-540 [pilon] NODE_4885_length_628_cov_2.232742:1-628 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 442 of 628 bases (70.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4885_length_628_cov_2.232742:1-628 [pilon] Processing NODE_487_length_1923_cov_5.966704:1-1923 [pilon] NODE_2866_length_899_cov_27.895887:1-899 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 614, Coverage: 65, minDepth: 16 [pilon] Confirmed 838 of 899 bases (93.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2866_length_899_cov_27.895887:1-899 [pilon] Processing NODE_8713_length_381_cov_26.434615:1-381 [pilon] NODE_8782_length_378_cov_16.591440:1-378 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 87, Coverage: 10, minDepth: 5 [pilon] Confirmed 202 of 378 bases (53.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8782_length_378_cov_16.591440:1-378 [pilon] Processing NODE_8133_length_411_cov_24.458621:1-411 [pilon] NODE_7601_length_438_cov_0.656151:1-438 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 5, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 438 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7601_length_438_cov_0.656151:1-438 [pilon] Processing NODE_1895_length_1114_cov_29.911380:1-1114 [pilon] NODE_1932_length_1103_cov_3.058045:1-1103 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 76, Coverage: 9, minDepth: 5 [pilon] Confirmed 873 of 1103 bases (79.15%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1932_length_1103_cov_3.058045:1-1103 [pilon] Processing NODE_3271_length_819_cov_37.889685:1-819 [pilon] NODE_11812_length_252_cov_21.450382:1-252 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 56, Coverage: 9, minDepth: 5 [pilon] Confirmed 217 of 252 bases (86.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11812_length_252_cov_21.450382:1-252 [pilon] Processing NODE_1886_length_1117_cov_29.266064:1-1117 [pilon] NODE_2425_length_984_cov_55.885284:1-984 log: [pilon] frags shovill.bam: coverage 118 [pilon] Total Reads: 1100, Coverage: 118, minDepth: 30 [pilon] Confirmed 899 of 984 bases (91.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2425_length_984_cov_55.885284:1-984 [pilon] Processing NODE_6728_length_489_cov_1.029891:1-489 [pilon] NODE_8214_length_408_cov_3.209059:1-408 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 41, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 408 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8214_length_408_cov_3.209059:1-408 [pilon] Processing NODE_12578_length_243_cov_27.803279:1-243 [pilon] NODE_10369_length_310_cov_9.566138:1-310 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 310 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10369_length_310_cov_9.566138:1-310 [pilon] Processing NODE_6943_length_474_cov_64.747875:1-474 [pilon] NODE_1117_length_1432_cov_3.008391:1-1432 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 111, Coverage: 10, minDepth: 5 [pilon] Confirmed 1099 of 1432 bases (76.75%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1117_length_1432_cov_3.008391:1-1432 [pilon] Processing NODE_9530_length_345_cov_12.745536:1-345 [pilon] NODE_2095_length_1061_cov_13.442553:1-1061 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 324, Coverage: 28, minDepth: 7 [pilon] Confirmed 996 of 1061 bases (93.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2095_length_1061_cov_13.442553:1-1061 [pilon] Processing NODE_14846_length_243_cov_7.237705:1-243 [pilon] NODE_3218_length_830_cov_25.392102:1-830 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 485, Coverage: 39, minDepth: 10 [pilon] Confirmed 668 of 830 bases (80.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3218_length_830_cov_25.392102:1-830 [pilon] Processing NODE_3125_length_847_cov_19.712121:1-847 [pilon] NODE_9322_length_353_cov_56.418103:1-353 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 274, Coverage: 53, minDepth: 13 [pilon] Confirmed 309 of 353 bases (87.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9322_length_353_cov_56.418103:1-353 [pilon] Processing NODE_1929_length_1104_cov_1.584944:1-1104 [pilon] NODE_5337_length_590_cov_4.620469:1-590 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 50, Coverage: 10, minDepth: 5 [pilon] Confirmed 472 of 590 bases (80.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5337_length_590_cov_4.620469:1-590 [pilon] Processing NODE_6331_length_515_cov_2.477157:1-515 [pilon] NODE_6721_length_489_cov_4.100543:1-489 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 37, Coverage: 9, minDepth: 5 [pilon] Confirmed 345 of 489 bases (70.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6721_length_489_cov_4.100543:1-489 [pilon] Processing NODE_3587_length_771_cov_11.110769:1-771 [pilon] NODE_9500_length_345_cov_29.379464:1-345 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 140, Coverage: 8, minDepth: 5 [pilon] Confirmed 156 of 345 bases (45.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9500_length_345_cov_29.379464:1-345 [pilon] Processing NODE_15112_length_216_cov_6.757895:1-216 [pilon] NODE_1875_length_1121_cov_11.689000:1-1121 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 276, Coverage: 22, minDepth: 6 [pilon] Confirmed 793 of 1121 bases (70.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1875_length_1121_cov_11.689000:1-1121 [pilon] Processing NODE_7744_length_430_cov_1.715210:1-430 [pilon] NODE_15156_length_186_cov_15.430769:1-186 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 186 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15156_length_186_cov_15.430769:1-186 [pilon] Processing NODE_4899_length_626_cov_26.091089:1-626 [pilon] NODE_12452_length_243_cov_29.868852:1-243 log: [pilon] NODE_9799_length_334_cov_14.690141:1-334 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 79, Coverage: 10, minDepth: 5 [pilon] Confirmed 228 of 334 bases (68.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9799_length_334_cov_14.690141:1-334 [pilon] Processing NODE_5829_length_553_cov_33.289352:1-553 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 87, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12452_length_243_cov_29.868852:1-243 [pilon] Processing NODE_14393_length_243_cov_11.114754:1-243 [pilon] NODE_14577_length_243_cov_9.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14577_length_243_cov_9.614754:1-243 [pilon] Processing NODE_610_length_1793_cov_12.355861:1-1793 [pilon] NODE_1667_length_1194_cov_14.492078:1-1194 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 447, Coverage: 23, minDepth: 6 [pilon] Confirmed 900 of 1194 bases (75.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1667_length_1194_cov_14.492078:1-1194 [pilon] Processing NODE_2090_length_1062_cov_2.201913:1-1062 [pilon] NODE_11232_length_274_cov_12.986928:1-274 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 45, Coverage: 5, minDepth: 5 [pilon] Confirmed 157 of 274 bases (57.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11232_length_274_cov_12.986928:1-274 [pilon] Processing NODE_9391_length_351_cov_8.082609:1-351 [pilon] NODE_12319_length_243_cov_32.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 93, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12319_length_243_cov_32.688525:1-243 [pilon] Processing NODE_1398_length_1297_cov_27.545068:1-1297 [pilon] NODE_487_length_1923_cov_5.966704:1-1923 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 305, Coverage: 15, minDepth: 5 [pilon] Confirmed 1650 of 1923 bases (85.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_487_length_1923_cov_5.966704:1-1923 [pilon] Processing NODE_8339_length_403_cov_0.875887:1-403 [pilon] NODE_14314_length_243_cov_11.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14314_length_243_cov_11.754098:1-243 [pilon] Processing NODE_623_length_1781_cov_2.064458:1-1781 [pilon] NODE_11799_length_252_cov_31.847328:1-252 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 96, Coverage: 7, minDepth: 5 [pilon] Confirmed 177 of 252 bases (70.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11799_length_252_cov_31.847328:1-252 [pilon] Processing NODE_1827_length_1136_cov_3.154680:1-1136 [pilon] NODE_7723_length_431_cov_36.264516:1-431 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 269, Coverage: 42, minDepth: 11 [pilon] Confirmed 328 of 431 bases (76.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7723_length_431_cov_36.264516:1-431 [pilon] Processing NODE_10242_length_315_cov_18.144330:1-315 [pilon] NODE_6007_length_540_cov_14.181384:1-540 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 121, Coverage: 21, minDepth: 5 [pilon] Confirmed 457 of 540 bases (84.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6007_length_540_cov_14.181384:1-540 [pilon] Processing NODE_11454_length_264_cov_33.566434:1-264 [pilon] NODE_6728_length_489_cov_1.029891:1-489 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 9 of 489 bases (1.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6728_length_489_cov_1.029891:1-489 [pilon] Processing NODE_5098_length_610_cov_38.269939:1-610 [pilon] NODE_3271_length_819_cov_37.889685:1-819 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 601, Coverage: 54, minDepth: 14 [pilon] Confirmed 546 of 819 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3271_length_819_cov_37.889685:1-819 [pilon] Processing NODE_12944_length_243_cov_23.475410:1-243 [pilon] NODE_14846_length_243_cov_7.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14846_length_243_cov_7.237705:1-243 [pilon] Processing NODE_6717_length_489_cov_17.116848:1-489 [pilon] NODE_8713_length_381_cov_26.434615:1-381 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 156, Coverage: 20, minDepth: 5 [pilon] Confirmed 253 of 381 bases (66.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8713_length_381_cov_26.434615:1-381 [pilon] Processing NODE_11801_length_252_cov_31.083969:1-252 [pilon] NODE_8133_length_411_cov_24.458621:1-411 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 173, Coverage: 14, minDepth: 5 [pilon] Confirmed 258 of 411 bases (62.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8133_length_411_cov_24.458621:1-411 [pilon] Processing NODE_771_length_1642_cov_9.789612:1-1642 [pilon] NODE_12578_length_243_cov_27.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12578_length_243_cov_27.803279:1-243 [pilon] Processing NODE_11490_length_264_cov_13.867133:1-264 [pilon] NODE_1895_length_1114_cov_29.911380:1-1114 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 737, Coverage: 62, minDepth: 16 [pilon] Confirmed 862 of 1114 bases (77.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1895_length_1114_cov_29.911380:1-1114 [pilon] Processing NODE_13859_length_243_cov_15.213115:1-243 [pilon] NODE_9530_length_345_cov_12.745536:1-345 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 64, Coverage: 5, minDepth: 5 [pilon] Confirmed 174 of 345 bases (50.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9530_length_345_cov_12.745536:1-345 [pilon] Processing NODE_5788_length_556_cov_28.560920:1-556 [pilon] NODE_1929_length_1104_cov_1.584944:1-1104 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 639 of 1104 bases (57.88%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1929_length_1104_cov_1.584944:1-1104 [pilon] Processing NODE_8916_length_370_cov_34.682731:1-370 [pilon] NODE_4899_length_626_cov_26.091089:1-626 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 323, Coverage: 23, minDepth: 6 [pilon] Confirmed 516 of 626 bases (82.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4899_length_626_cov_26.091089:1-626 [pilon] Processing NODE_13657_length_243_cov_16.918033:1-243 [pilon] NODE_1886_length_1117_cov_29.266064:1-1117 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 650, Coverage: 66, minDepth: 17 [pilon] Confirmed 922 of 1117 bases (82.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1886_length_1117_cov_29.266064:1-1117 [pilon] Processing NODE_8882_length_372_cov_34.880478:1-372 [pilon] NODE_3125_length_847_cov_19.712121:1-847 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 366, Coverage: 25, minDepth: 6 [pilon] Confirmed 680 of 847 bases (80.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3125_length_847_cov_19.712121:1-847 [pilon] Processing NODE_2245_length_1021_cov_32.243333:1-1021 [pilon] NODE_6331_length_515_cov_2.477157:1-515 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 25, Coverage: 6, minDepth: 5 [pilon] Confirmed 326 of 515 bases (63.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6331_length_515_cov_2.477157:1-515 [pilon] Processing NODE_9289_length_354_cov_18.416309:1-354 [pilon] NODE_15112_length_216_cov_6.757895:1-216 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 216 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15112_length_216_cov_6.757895:1-216 [pilon] Processing NODE_6592_length_498_cov_0.978780:1-498 [pilon] NODE_6943_length_474_cov_64.747875:1-474 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 515, Coverage: 81, minDepth: 20 [pilon] Confirmed 394 of 474 bases (83.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6943_length_474_cov_64.747875:1-474 [pilon] Processing NODE_1772_length_1155_cov_14.903288:1-1155 [pilon] NODE_3587_length_771_cov_11.110769:1-771 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 187, Coverage: 20, minDepth: 5 [pilon] Confirmed 573 of 771 bases (74.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3587_length_771_cov_11.110769:1-771 [pilon] Processing NODE_5525_length_575_cov_32.394273:1-575 [pilon] NODE_7744_length_430_cov_1.715210:1-430 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 75 of 430 bases (17.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7744_length_430_cov_1.715210:1-430 [pilon] Processing NODE_10497_length_305_cov_8.625000:1-305 [pilon] NODE_2090_length_1062_cov_2.201913:1-1062 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 55, Coverage: 7, minDepth: 5 [pilon] Confirmed 782 of 1062 bases (73.63%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2090_length_1062_cov_2.201913:1-1062 [pilon] Processing NODE_5958_length_544_cov_6.794326:1-544 [pilon] NODE_5829_length_553_cov_33.289352:1-553 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 321, Coverage: 52, minDepth: 13 [pilon] Confirmed 455 of 553 bases (82.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5829_length_553_cov_33.289352:1-553 [pilon] Processing NODE_5911_length_547_cov_3.906103:1-547 [pilon] NODE_6717_length_489_cov_17.116848:1-489 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 160, Coverage: 8, minDepth: 5 [pilon] Confirmed 267 of 489 bases (54.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6717_length_489_cov_17.116848:1-489 [pilon] Processing NODE_3126_length_847_cov_6.643251:1-847 [pilon] NODE_9391_length_351_cov_8.082609:1-351 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 42, Coverage: 4, minDepth: 5 [pilon] Confirmed 167 of 351 bases (47.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9391_length_351_cov_8.082609:1-351 [pilon] Processing NODE_13585_length_243_cov_17.598361:1-243 [pilon] NODE_610_length_1793_cov_12.355861:1-1793 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 492, Coverage: 26, minDepth: 7 [pilon] Confirmed 1025 of 1793 bases (57.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_610_length_1793_cov_12.355861:1-1793 [pilon] Processing NODE_8413_length_399_cov_13.906475:1-399 [pilon] NODE_12944_length_243_cov_23.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12944_length_243_cov_23.475410:1-243 [pilon] Processing NODE_7284_length_455_cov_22.200599:1-455 [pilon] NODE_14393_length_243_cov_11.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14393_length_243_cov_11.114754:1-243 [pilon] Processing NODE_10619_length_300_cov_23.162011:1-300 [pilon] NODE_8339_length_403_cov_0.875887:1-403 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 47 of 403 bases (11.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8339_length_403_cov_0.875887:1-403 [pilon] Processing NODE_11748_length_255_cov_18.611940:1-255 [pilon] NODE_10242_length_315_cov_18.144330:1-315 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 151 of 315 bases (47.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10242_length_315_cov_18.144330:1-315 [pilon] Processing NODE_9190_length_357_cov_29.669492:1-357 [pilon] NODE_623_length_1781_cov_2.064458:1-1781 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 95, Coverage: 7, minDepth: 5 [pilon] Confirmed 1191 of 1781 bases (66.87%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_623_length_1781_cov_2.064458:1-1781 [pilon] Processing NODE_5520_length_576_cov_3.408791:1-576 [pilon] NODE_5098_length_610_cov_38.269939:1-610 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 410, Coverage: 66, minDepth: 17 [pilon] Confirmed 527 of 610 bases (86.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5098_length_610_cov_38.269939:1-610 [pilon] Processing NODE_14776_length_243_cov_7.950820:1-243 [pilon] NODE_1398_length_1297_cov_27.545068:1-1297 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 795, Coverage: 69, minDepth: 17 [pilon] Confirmed 892 of 1297 bases (68.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1398_length_1297_cov_27.545068:1-1297 [pilon] Processing NODE_4970_length_621_cov_1.320000:1-621 [pilon] NODE_1827_length_1136_cov_3.154680:1-1136 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 85, Coverage: 10, minDepth: 5 [pilon] Confirmed 721 of 1136 bases (63.47%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1827_length_1136_cov_3.154680:1-1136 [pilon] Processing NODE_7719_length_432_cov_1.511254:1-432 [pilon] NODE_11454_length_264_cov_33.566434:1-264 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 111, Coverage: 7, minDepth: 5 [pilon] Confirmed 184 of 264 bases (69.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11454_length_264_cov_33.566434:1-264 [pilon] Processing NODE_941_length_1534_cov_2.207360:1-1534 [pilon] NODE_11801_length_252_cov_31.083969:1-252 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 86, Coverage: 6, minDepth: 5 [pilon] Confirmed 148 of 252 bases (58.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11801_length_252_cov_31.083969:1-252 [pilon] Processing NODE_10751_length_295_cov_21.080460:1-295 [pilon] NODE_771_length_1642_cov_9.789612:1-1642 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 393, Coverage: 20, minDepth: 5 [pilon] Confirmed 1504 of 1642 bases (91.60%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_771_length_1642_cov_9.789612:1-1642 [pilon] Processing NODE_12954_length_243_cov_23.385246:1-243 [pilon] NODE_13657_length_243_cov_16.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13657_length_243_cov_16.918033:1-243 [pilon] Processing NODE_6514_length_502_cov_35.286089:1-502 [pilon] NODE_11490_length_264_cov_13.867133:1-264 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 47, Coverage: 5, minDepth: 5 [pilon] Confirmed 178 of 264 bases (67.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11490_length_264_cov_13.867133:1-264 [pilon] Processing NODE_6823_length_482_cov_0.631579:1-482 [pilon] NODE_13859_length_243_cov_15.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13859_length_243_cov_15.213115:1-243 [pilon] Processing NODE_1338_length_1327_cov_9.172471:1-1327 [pilon] NODE_8916_length_370_cov_34.682731:1-370 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 191, Coverage: 24, minDepth: 6 [pilon] Confirmed 298 of 370 bases (80.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8916_length_370_cov_34.682731:1-370 [pilon] Processing NODE_7340_length_451_cov_16.181818:1-451 [pilon] NODE_5788_length_556_cov_28.560920:1-556 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 280, Coverage: 43, minDepth: 11 [pilon] Confirmed 488 of 556 bases (87.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5788_length_556_cov_28.560920:1-556 [pilon] Processing NODE_7960_length_420_cov_11.558528:1-420 [pilon] NODE_9289_length_354_cov_18.416309:1-354 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 96, Coverage: 4, minDepth: 5 [pilon] Confirmed 133 of 354 bases (37.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9289_length_354_cov_18.416309:1-354 [pilon] Processing NODE_2652_length_937_cov_6.049020:1-937 [pilon] NODE_8882_length_372_cov_34.880478:1-372 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 193, Coverage: 4, minDepth: 5 [pilon] Confirmed 134 of 372 bases (36.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8882_length_372_cov_34.880478:1-372 [pilon] Processing NODE_9518_length_345_cov_18.450893:1-345 [pilon] NODE_3126_length_847_cov_6.643251:1-847 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 139, Coverage: 18, minDepth: 5 [pilon] Confirmed 575 of 847 bases (67.89%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3126_length_847_cov_6.643251:1-847 [pilon] Processing NODE_7097_length_465_cov_17.514535:1-465 [pilon] NODE_6592_length_498_cov_0.978780:1-498 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 156 of 498 bases (31.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6592_length_498_cov_0.978780:1-498 [pilon] Processing NODE_11508_length_263_cov_32.528169:1-263 [pilon] NODE_2245_length_1021_cov_32.243333:1-1021 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 695, Coverage: 65, minDepth: 16 [pilon] Confirmed 885 of 1021 bases (86.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2245_length_1021_cov_32.243333:1-1021 [pilon] Processing NODE_494_length_1914_cov_8.951478:1-1914 [pilon] NODE_1772_length_1155_cov_14.903288:1-1155 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 399, Coverage: 30, minDepth: 8 [pilon] Confirmed 1051 of 1155 bases (91.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1772_length_1155_cov_14.903288:1-1155 [pilon] Processing NODE_8843_length_375_cov_12.177165:1-375 [pilon] NODE_11748_length_255_cov_18.611940:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 63, Coverage: 4, minDepth: 5 [pilon] Confirmed 85 of 255 bases (33.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11748_length_255_cov_18.611940:1-255 [pilon] NODE_5525_length_575_cov_32.394273:1-575 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 301, Coverage: 48, minDepth: 12 [pilon] Confirmed 500 of 575 bases (86.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_6813_length_482_cov_26.537396:1-482 [pilon] Finished processing NODE_5525_length_575_cov_32.394273:1-575 [pilon] Processing NODE_7182_length_460_cov_64.407080:1-460 [pilon] NODE_10497_length_305_cov_8.625000:1-305 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 305 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10497_length_305_cov_8.625000:1-305 [pilon] Processing NODE_14435_length_243_cov_10.786885:1-243 [pilon] NODE_13585_length_243_cov_17.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13585_length_243_cov_17.598361:1-243 [pilon] Processing NODE_2129_length_1051_cov_33.689247:1-1051 [pilon] NODE_5958_length_544_cov_6.794326:1-544 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 78, Coverage: 8, minDepth: 5 [pilon] Confirmed 300 of 544 bases (55.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5958_length_544_cov_6.794326:1-544 [pilon] Processing NODE_12289_length_243_cov_33.467213:1-243 [pilon] NODE_5911_length_547_cov_3.906103:1-547 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 47, Coverage: 10, minDepth: 5 [pilon] Confirmed 489 of 547 bases (89.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5911_length_547_cov_3.906103:1-547 [pilon] Processing NODE_9993_length_326_cov_14.517073:1-326 [pilon] NODE_7284_length_455_cov_22.200599:1-455 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 166, Coverage: 24, minDepth: 6 [pilon] Confirmed 402 of 455 bases (88.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7284_length_455_cov_22.200599:1-455 [pilon] Processing NODE_2817_length_907_cov_0.788804:1-907 [pilon] NODE_8413_length_399_cov_13.906475:1-399 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 87, Coverage: 12, minDepth: 5 [pilon] Confirmed 283 of 399 bases (70.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8413_length_399_cov_13.906475:1-399 [pilon] NODE_10619_length_300_cov_23.162011:1-300 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 86, Coverage: 7, minDepth: 5 [pilon] Confirmed 228 of 300 bases (76.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_3503_length_783_cov_3.599698:1-783 [pilon] Finished processing NODE_10619_length_300_cov_23.162011:1-300 [pilon] Processing NODE_7754_length_429_cov_23.558442:1-429 [pilon] NODE_7719_length_432_cov_1.511254:1-432 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 21, Coverage: 6, minDepth: 5 [pilon] Confirmed 274 of 432 bases (63.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7719_length_432_cov_1.511254:1-432 [pilon] Processing NODE_3128_length_846_cov_45.834483:1-846 [pilon] NODE_9190_length_357_cov_29.669492:1-357 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 131, Coverage: 4, minDepth: 5 [pilon] Confirmed 132 of 357 bases (36.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9190_length_357_cov_29.669492:1-357 [pilon] Processing NODE_10010_length_324_cov_31.433498:1-324 [pilon] NODE_5520_length_576_cov_3.408791:1-576 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 38, Coverage: 8, minDepth: 5 [pilon] Confirmed 341 of 576 bases (59.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5520_length_576_cov_3.408791:1-576 [pilon] Processing NODE_8474_length_395_cov_27.412409:1-395 [pilon] NODE_14776_length_243_cov_7.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14776_length_243_cov_7.950820:1-243 [pilon] Processing NODE_2177_length_1039_cov_29.302832:1-1039 [pilon] NODE_4970_length_621_cov_1.320000:1-621 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 621 bases (20.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4970_length_621_cov_1.320000:1-621 [pilon] Processing NODE_1623_length_1210_cov_3.049587:1-1210 [pilon] NODE_941_length_1534_cov_2.207360:1-1534 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 103, Coverage: 8, minDepth: 5 [pilon] Confirmed 1274 of 1534 bases (83.05%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_941_length_1534_cov_2.207360:1-1534 [pilon] Processing NODE_6122_length_530_cov_20.012225:1-530 [pilon] NODE_7097_length_465_cov_17.514535:1-465 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 144, Coverage: 16, minDepth: 5 [pilon] Confirmed 324 of 465 bases (69.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7097_length_465_cov_17.514535:1-465 [pilon] Processing NODE_9208_length_357_cov_18.724576:1-357 [pilon] NODE_10751_length_295_cov_21.080460:1-295 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 84, Coverage: 16, minDepth: 5 [pilon] Confirmed 241 of 295 bases (81.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10751_length_295_cov_21.080460:1-295 [pilon] Processing NODE_5290_length_593_cov_25.317797:1-593 [pilon] NODE_9518_length_345_cov_18.450893:1-345 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 85, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 345 bases (37.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9518_length_345_cov_18.450893:1-345 [pilon] Processing NODE_6330_length_515_cov_3.487310:1-515 [pilon] NODE_6813_length_482_cov_26.537396:1-482 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 227, Coverage: 22, minDepth: 6 [pilon] Confirmed 285 of 482 bases (59.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6813_length_482_cov_26.537396:1-482 [pilon] Processing NODE_14623_length_243_cov_9.237705:1-243 [pilon] NODE_12954_length_243_cov_23.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12954_length_243_cov_23.385246:1-243 [pilon] Processing NODE_10919_length_288_cov_10.580838:1-288 [pilon] NODE_6514_length_502_cov_35.286089:1-502 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 308, Coverage: 38, minDepth: 10 [pilon] Confirmed 363 of 502 bases (72.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6514_length_502_cov_35.286089:1-502 [pilon] Processing NODE_2489_length_970_cov_1.579505:1-970 [pilon] NODE_8843_length_375_cov_12.177165:1-375 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 78, Coverage: 5, minDepth: 5 [pilon] Confirmed 161 of 375 bases (42.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8843_length_375_cov_12.177165:1-375 [pilon] Processing NODE_11825_length_252_cov_15.320611:1-252 [pilon] NODE_7960_length_420_cov_11.558528:1-420 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 71, Coverage: 19, minDepth: 5 [pilon] Confirmed 390 of 420 bases (92.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7960_length_420_cov_11.558528:1-420 [pilon] Processing NODE_1834_length_1133_cov_25.880435:1-1133 [pilon] NODE_2652_length_937_cov_6.049020:1-937 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 131, Coverage: 14, minDepth: 5 [pilon] Confirmed 508 of 937 bases (54.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2652_length_937_cov_6.049020:1-937 [pilon] Processing NODE_1901_length_1112_cov_43.221998:1-1112 [pilon] NODE_6823_length_482_cov_0.631579:1-482 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 482 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6823_length_482_cov_0.631579:1-482 [pilon] Processing NODE_4323_length_678_cov_11.080790:1-678 [pilon] NODE_1338_length_1327_cov_9.172471:1-1327 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 301, Coverage: 22, minDepth: 6 [pilon] Confirmed 1248 of 1327 bases (94.05%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1338_length_1327_cov_9.172471:1-1327 [pilon] Processing NODE_3086_length_856_cov_15.710204:1-856 [pilon] NODE_7340_length_451_cov_16.181818:1-451 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 113, Coverage: 15, minDepth: 5 [pilon] Confirmed 260 of 451 bases (57.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7340_length_451_cov_16.181818:1-451 [pilon] Processing NODE_9923_length_329_cov_12.028846:1-329 [pilon] NODE_11508_length_263_cov_32.528169:1-263 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 95, Coverage: 12, minDepth: 5 [pilon] Confirmed 223 of 263 bases (84.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11508_length_263_cov_32.528169:1-263 [pilon] Processing NODE_13980_length_243_cov_14.278689:1-243 [pilon] NODE_494_length_1914_cov_8.951478:1-1914 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 475, Coverage: 31, minDepth: 8 [pilon] Confirmed 1618 of 1914 bases (84.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_494_length_1914_cov_8.951478:1-1914 [pilon] Processing NODE_7278_length_456_cov_1.140299:1-456 [pilon] NODE_14435_length_243_cov_10.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14435_length_243_cov_10.786885:1-243 [pilon] Processing NODE_2162_length_1042_cov_15.406080:1-1042 [pilon] NODE_7182_length_460_cov_64.407080:1-460 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 489, Coverage: 79, minDepth: 20 [pilon] Confirmed 401 of 460 bases (87.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7182_length_460_cov_64.407080:1-460 [pilon] Processing NODE_9980_length_327_cov_8.485437:1-327 [pilon] NODE_2129_length_1051_cov_33.689247:1-1051 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 775, Coverage: 77, minDepth: 19 [pilon] Confirmed 865 of 1051 bases (82.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2129_length_1051_cov_33.689247:1-1051 [pilon] Processing NODE_3722_length_752_cov_1.763867:1-752 [pilon] NODE_12289_length_243_cov_33.467213:1-243 log: [pilon] NODE_2817_length_907_cov_0.788804:1-907 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 27, Coverage: 4, minDepth: 5 [pilon] Confirmed 337 of 907 bases (37.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2817_length_907_cov_0.788804:1-907 [pilon] Processing NODE_14454_length_243_cov_10.639344:1-243 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 107, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12289_length_243_cov_33.467213:1-243 [pilon] Processing NODE_13927_length_243_cov_14.713115:1-243 [pilon] NODE_9993_length_326_cov_14.517073:1-326 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 65, Coverage: 11, minDepth: 5 [pilon] Confirmed 216 of 326 bases (66.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9993_length_326_cov_14.517073:1-326 [pilon] Processing NODE_11259_length_273_cov_19.157895:1-273 [pilon] NODE_10010_length_324_cov_31.433498:1-324 log: [pilon] NODE_3503_length_783_cov_3.599698:1-783 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 60, Coverage: 9, minDepth: 5 [pilon] Confirmed 517 of 783 bases (66.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3503_length_783_cov_3.599698:1-783 [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 128, Coverage: 8, minDepth: 5 [pilon] Confirmed 177 of 324 bases (54.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10010_length_324_cov_31.433498:1-324 [pilon] Processing NODE_10487_length_305_cov_31.092391:1-305 [pilon] Processing NODE_1277_length_1351_cov_13.576423:1-1351 [pilon] NODE_3128_length_846_cov_45.834483:1-846 log: [pilon] frags shovill.bam: coverage 100 [pilon] Total Reads: 784, Coverage: 100, minDepth: 25 [pilon] Confirmed 715 of 846 bases (84.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3128_length_846_cov_45.834483:1-846 [pilon] Processing NODE_3738_length_750_cov_2.696343:1-750 [pilon] NODE_9208_length_357_cov_18.724576:1-357 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 90, Coverage: 9, minDepth: 5 [pilon] Confirmed 217 of 357 bases (60.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9208_length_357_cov_18.724576:1-357 [pilon] Processing NODE_14215_length_243_cov_12.491803:1-243 [pilon] NODE_6330_length_515_cov_3.487310:1-515 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 43, Coverage: 9, minDepth: 5 [pilon] Confirmed 398 of 515 bases (77.28%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6330_length_515_cov_3.487310:1-515 [pilon] Processing NODE_3989_length_716_cov_6.532773:1-716 [pilon] NODE_6122_length_530_cov_20.012225:1-530 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 188, Coverage: 28, minDepth: 7 [pilon] Confirmed 461 of 530 bases (86.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6122_length_530_cov_20.012225:1-530 [pilon] NODE_8474_length_395_cov_27.412409:1-395 log: [pilon] Processing NODE_13165_length_243_cov_21.385246:1-243 [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 183, Coverage: 25, minDepth: 6 [pilon] Confirmed 339 of 395 bases (85.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8474_length_395_cov_27.412409:1-395 [pilon] Processing NODE_14992_length_243_cov_5.540984:1-243 [pilon] NODE_1623_length_1210_cov_3.049587:1-1210 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 834 of 1210 bases (68.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1623_length_1210_cov_3.049587:1-1210 [pilon] Processing NODE_3628_length_764_cov_27.297045:1-764 [pilon] NODE_7754_length_429_cov_23.558442:1-429 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 163, Coverage: 29, minDepth: 7 [pilon] Confirmed 357 of 429 bases (83.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7754_length_429_cov_23.558442:1-429 [pilon] Processing NODE_9786_length_335_cov_14.149533:1-335 [pilon] NODE_2177_length_1039_cov_29.302832:1-1039 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 629, Coverage: 61, minDepth: 15 [pilon] Confirmed 996 of 1039 bases (95.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2177_length_1039_cov_29.302832:1-1039 [pilon] Processing NODE_5838_length_552_cov_25.770302:1-552 [pilon] NODE_14623_length_243_cov_9.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14623_length_243_cov_9.237705:1-243 [pilon] Processing NODE_748_length_1670_cov_2.001937:1-1670 [pilon] NODE_11825_length_252_cov_15.320611:1-252 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 51, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 252 bases (51.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11825_length_252_cov_15.320611:1-252 [pilon] Processing NODE_10649_length_300_cov_11.385475:1-300 [pilon] NODE_5290_length_593_cov_25.317797:1-593 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 274, Coverage: 41, minDepth: 10 [pilon] Confirmed 482 of 593 bases (81.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5290_length_593_cov_25.317797:1-593 [pilon] Processing NODE_1018_length_1487_cov_1.435578:1-1487 [pilon] NODE_10919_length_288_cov_10.580838:1-288 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 33, Coverage: 4, minDepth: 5 [pilon] Confirmed 129 of 288 bases (44.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10919_length_288_cov_10.580838:1-288 [pilon] Processing NODE_8493_length_394_cov_21.567766:1-394 [pilon] NODE_3086_length_856_cov_15.710204:1-856 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 300, Coverage: 31, minDepth: 8 [pilon] Confirmed 710 of 856 bases (82.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3086_length_856_cov_15.710204:1-856 [pilon] Processing NODE_14939_length_243_cov_6.270492:1-243 [pilon] NODE_2489_length_970_cov_1.579505:1-970 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 46, Coverage: 6, minDepth: 5 [pilon] Confirmed 655 of 970 bases (67.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2489_length_970_cov_1.579505:1-970 [pilon] Processing NODE_7062_length_467_cov_28.921965:1-467 [pilon] NODE_4323_length_678_cov_11.080790:1-678 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 135, Coverage: 11, minDepth: 5 [pilon] Confirmed 513 of 678 bases (75.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4323_length_678_cov_11.080790:1-678 [pilon] Processing NODE_5975_length_543_cov_12.078199:1-543 [pilon] NODE_1834_length_1133_cov_25.880435:1-1133 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 638, Coverage: 42, minDepth: 11 [pilon] Confirmed 1011 of 1133 bases (89.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1834_length_1133_cov_25.880435:1-1133 [pilon] Processing NODE_3785_length_742_cov_51.028986:1-742 [pilon] NODE_9923_length_329_cov_12.028846:1-329 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 69, Coverage: 3, minDepth: 5 [pilon] Confirmed 93 of 329 bases (28.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9923_length_329_cov_12.028846:1-329 [pilon] Processing NODE_8468_length_396_cov_9.392727:1-396 [pilon] NODE_13980_length_243_cov_14.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13980_length_243_cov_14.278689:1-243 [pilon] Processing NODE_10764_length_294_cov_38.797688:1-294 [pilon] NODE_1901_length_1112_cov_43.221998:1-1112 log: [pilon] frags shovill.bam: coverage 93 [pilon] Total Reads: 1022, Coverage: 93, minDepth: 23 [pilon] Confirmed 978 of 1112 bases (87.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1901_length_1112_cov_43.221998:1-1112 [pilon] Processing NODE_9460_length_348_cov_8.414097:1-348 [pilon] NODE_7278_length_456_cov_1.140299:1-456 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 88 of 456 bases (19.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7278_length_456_cov_1.140299:1-456 [pilon] Processing NODE_5222_length_599_cov_27.083682:1-599 [pilon] NODE_3628_length_764_cov_27.297045:1-764 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 408, Coverage: 50, minDepth: 13 [pilon] Confirmed 589 of 764 bases (77.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3628_length_764_cov_27.297045:1-764 [pilon] Processing NODE_3663_length_760_cov_1.809077:1-760 [pilon] NODE_3722_length_752_cov_1.763867:1-752 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 49, Coverage: 8, minDepth: 5 [pilon] Confirmed 545 of 752 bases (72.47%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3722_length_752_cov_1.763867:1-752 [pilon] Processing NODE_4741_length_640_cov_3.028902:1-640 [pilon] NODE_14454_length_243_cov_10.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14454_length_243_cov_10.639344:1-243 [pilon] Processing NODE_15227_length_142_cov_3.333333:1-142 [pilon] NODE_9980_length_327_cov_8.485437:1-327 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 20, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 327 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9980_length_327_cov_8.485437:1-327 [pilon] Processing NODE_13211_length_243_cov_20.975410:1-243 [pilon] NODE_13927_length_243_cov_14.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13927_length_243_cov_14.713115:1-243 [pilon] Processing NODE_3757_length_747_cov_1.420128:1-747 [pilon] NODE_10487_length_305_cov_31.092391:1-305 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 126, Coverage: 17, minDepth: 5 [pilon] Confirmed 268 of 305 bases (87.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10487_length_305_cov_31.092391:1-305 [pilon] Processing NODE_10785_length_294_cov_13.734104:1-294 [pilon] NODE_3989_length_716_cov_6.532773:1-716 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 113, Coverage: 18, minDepth: 5 [pilon] Confirmed 443 of 716 bases (61.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3989_length_716_cov_6.532773:1-716 [pilon] Processing NODE_6502_length_504_cov_0.770235:1-504 [pilon] NODE_2162_length_1042_cov_15.406080:1-1042 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 325, Coverage: 26, minDepth: 7 [pilon] Confirmed 957 of 1042 bases (91.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2162_length_1042_cov_15.406080:1-1042 [pilon] Processing NODE_9121_length_360_cov_23.623431:1-360 [pilon] NODE_14992_length_243_cov_5.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14992_length_243_cov_5.540984:1-243 [pilon] Processing NODE_3573_length_774_cov_4.245023:1-774 [pilon] NODE_1277_length_1351_cov_13.576423:1-1351 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 454, Coverage: 28, minDepth: 7 [pilon] Confirmed 1141 of 1351 bases (84.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1277_length_1351_cov_13.576423:1-1351 [pilon] Processing NODE_15249_length_127_cov_143.333333:1-127 [pilon] NODE_9786_length_335_cov_14.149533:1-335 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 70, Coverage: 6, minDepth: 5 [pilon] Confirmed 217 of 335 bases (64.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9786_length_335_cov_14.149533:1-335 [pilon] Processing NODE_778_length_1637_cov_2.116095:1-1637 [pilon] NODE_11259_length_273_cov_19.157895:1-273 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 64, Coverage: 6, minDepth: 5 [pilon] Confirmed 157 of 273 bases (57.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11259_length_273_cov_19.157895:1-273 [pilon] Processing NODE_6146_length_528_cov_25.904177:1-528 [pilon] NODE_5838_length_552_cov_25.770302:1-552 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 280, Coverage: 43, minDepth: 11 [pilon] Confirmed 418 of 552 bases (75.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5838_length_552_cov_25.770302:1-552 [pilon] Processing NODE_13921_length_243_cov_14.737705:1-243 [pilon] NODE_1018_length_1487_cov_1.435578:1-1487 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 56, Coverage: 5, minDepth: 5 [pilon] Confirmed 746 of 1487 bases (50.17%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1018_length_1487_cov_1.435578:1-1487 [pilon] Processing NODE_1873_length_1121_cov_23.150000:1-1121 [pilon] NODE_14215_length_243_cov_12.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14215_length_243_cov_12.491803:1-243 [pilon] Processing NODE_3013_length_871_cov_2.033333:1-871 [pilon] NODE_3738_length_750_cov_2.696343:1-750 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 51, Coverage: 7, minDepth: 5 [pilon] Confirmed 413 of 750 bases (55.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3738_length_750_cov_2.696343:1-750 [pilon] Processing NODE_6315_length_516_cov_24.898734:1-516 [pilon] NODE_13165_length_243_cov_21.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13165_length_243_cov_21.385246:1-243 [pilon] Processing NODE_11921_length_249_cov_12.367188:1-249 [pilon] NODE_10649_length_300_cov_11.385475:1-300 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 48, Coverage: 3, minDepth: 5 [pilon] Confirmed 118 of 300 bases (39.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10649_length_300_cov_11.385475:1-300 [pilon] Processing NODE_409_length_2037_cov_13.287056:1-2037 [pilon] NODE_7062_length_467_cov_28.921965:1-467 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 248, Coverage: 25, minDepth: 6 [pilon] Confirmed 417 of 467 bases (89.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7062_length_467_cov_28.921965:1-467 [pilon] Processing NODE_15219_length_149_cov_38.285714:1-149 [pilon] NODE_9121_length_360_cov_23.623431:1-360 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 132, Coverage: 17, minDepth: 5 [pilon] Confirmed 271 of 360 bases (75.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9121_length_360_cov_23.623431:1-360 [pilon] Processing NODE_2466_length_974_cov_27.873388:1-974 [pilon] NODE_8493_length_394_cov_21.567766:1-394 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 135, Coverage: 23, minDepth: 6 [pilon] Confirmed 344 of 394 bases (87.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8493_length_394_cov_21.567766:1-394 [pilon] Processing NODE_11531_length_263_cov_6.457746:1-263 [pilon] NODE_748_length_1670_cov_2.001937:1-1670 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 80, Coverage: 6, minDepth: 5 [pilon] Confirmed 985 of 1670 bases (58.98%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_748_length_1670_cov_2.001937:1-1670 [pilon] Processing NODE_10232_length_315_cov_29.381443:1-315 [pilon] NODE_5975_length_543_cov_12.078199:1-543 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 139, Coverage: 18, minDepth: 5 [pilon] Confirmed 402 of 543 bases (74.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5975_length_543_cov_12.078199:1-543 [pilon] Processing NODE_13583_length_243_cov_17.631148:1-243 [pilon] NODE_10764_length_294_cov_38.797688:1-294 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 116, Coverage: 8, minDepth: 5 [pilon] Confirmed 171 of 294 bases (58.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10764_length_294_cov_38.797688:1-294 [pilon] Processing NODE_6198_length_524_cov_17.933002:1-524 [pilon] NODE_14939_length_243_cov_6.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14939_length_243_cov_6.270492:1-243 [pilon] Processing NODE_12934_length_243_cov_23.598361:1-243 [pilon] NODE_3757_length_747_cov_1.420128:1-747 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 34, Coverage: 6, minDepth: 5 [pilon] Confirmed 369 of 747 bases (49.40%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3757_length_747_cov_1.420128:1-747 [pilon] Processing NODE_8030_length_417_cov_10.949324:1-417 [pilon] NODE_5222_length_599_cov_27.083682:1-599 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 311, Coverage: 28, minDepth: 7 [pilon] Confirmed 464 of 599 bases (77.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5222_length_599_cov_27.083682:1-599 [pilon] Processing NODE_11087_length_280_cov_6.062893:1-280 [pilon] NODE_15249_length_127_cov_143.333333:1-127 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 127 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15249_length_127_cov_143.333333:1-127 [pilon] Processing NODE_8196_length_408_cov_25.094077:1-408 [pilon] NODE_4741_length_640_cov_3.028902:1-640 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 346 of 640 bases (54.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4741_length_640_cov_3.028902:1-640 [pilon] Processing NODE_7025_length_470_cov_11.128940:1-470 [pilon] NODE_13211_length_243_cov_20.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13211_length_243_cov_20.975410:1-243 [pilon] Processing NODE_7085_length_465_cov_59.619186:1-465 [pilon] NODE_778_length_1637_cov_2.116095:1-1637 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 101, Coverage: 8, minDepth: 5 [pilon] Confirmed 1176 of 1637 bases (71.84%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_778_length_1637_cov_2.116095:1-1637 [pilon] Processing NODE_10797_length_294_cov_6.595376:1-294 [pilon] NODE_9460_length_348_cov_8.414097:1-348 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 140 of 348 bases (40.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9460_length_348_cov_8.414097:1-348 [pilon] Processing NODE_6221_length_523_cov_3.388060:1-523 [pilon] NODE_1873_length_1121_cov_23.150000:1-1121 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 526, Coverage: 43, minDepth: 11 [pilon] Confirmed 980 of 1121 bases (87.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1873_length_1121_cov_23.150000:1-1121 [pilon] Processing NODE_5559_length_573_cov_16.150442:1-573 [pilon] NODE_3573_length_774_cov_4.245023:1-774 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 73, Coverage: 12, minDepth: 5 [pilon] Confirmed 642 of 774 bases (82.95%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3573_length_774_cov_4.245023:1-774 [pilon] Processing NODE_2799_length_909_cov_16.119289:1-909 [pilon] NODE_3663_length_760_cov_1.809077:1-760 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 418 of 760 bases (55.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3663_length_760_cov_1.809077:1-760 [pilon] Processing NODE_9691_length_339_cov_7.197248:1-339 [pilon] NODE_3785_length_742_cov_51.028986:1-742 log: [pilon] frags shovill.bam: coverage 108 [pilon] Total Reads: 708, Coverage: 108, minDepth: 27 [pilon] Confirmed 610 of 742 bases (82.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3785_length_742_cov_51.028986:1-742 [pilon] Processing NODE_11466_length_264_cov_22.608392:1-264 [pilon] NODE_8468_length_396_cov_9.392727:1-396 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 57, Coverage: 9, minDepth: 5 [pilon] Confirmed 277 of 396 bases (69.95%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8468_length_396_cov_9.392727:1-396 [pilon] Processing NODE_14934_length_243_cov_6.352459:1-243 [pilon] NODE_15227_length_142_cov_3.333333:1-142 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 142 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15227_length_142_cov_3.333333:1-142 [pilon] Processing NODE_13812_length_243_cov_15.549180:1-243 [pilon] NODE_6146_length_528_cov_25.904177:1-528 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 290, Coverage: 26, minDepth: 7 [pilon] Confirmed 322 of 528 bases (60.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6146_length_528_cov_25.904177:1-528 [pilon] Processing NODE_11766_length_255_cov_11.432836:1-255 [pilon] NODE_10785_length_294_cov_13.734104:1-294 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 48, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 294 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10785_length_294_cov_13.734104:1-294 [pilon] Processing NODE_14552_length_243_cov_9.893443:1-243 [pilon] NODE_6502_length_504_cov_0.770235:1-504 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 504 bases (24.60%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6502_length_504_cov_0.770235:1-504 [pilon] Processing NODE_14054_length_243_cov_13.795082:1-243 [pilon] NODE_13921_length_243_cov_14.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13921_length_243_cov_14.737705:1-243 [pilon] Processing NODE_7704_length_432_cov_18.083601:1-432 [pilon] NODE_3013_length_871_cov_2.033333:1-871 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 52, Coverage: 8, minDepth: 5 [pilon] Confirmed 565 of 871 bases (64.87%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3013_length_871_cov_2.033333:1-871 [pilon] Processing NODE_6323_length_515_cov_18.637056:1-515 [pilon] NODE_15219_length_149_cov_38.285714:1-149 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 149 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15219_length_149_cov_38.285714:1-149 [pilon] Processing NODE_2445_length_979_cov_26.397436:1-979 [pilon] NODE_6198_length_524_cov_17.933002:1-524 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 168, Coverage: 16, minDepth: 5 [pilon] Confirmed 364 of 524 bases (69.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6198_length_524_cov_17.933002:1-524 [pilon] Processing NODE_2697_length_929_cov_7.919554:1-929 [pilon] NODE_8030_length_417_cov_10.949324:1-417 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 27, Coverage: 2, minDepth: 5 [pilon] Confirmed 125 of 417 bases (29.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8030_length_417_cov_10.949324:1-417 [pilon] Processing NODE_11498_length_264_cov_7.965035:1-264 [pilon] NODE_13583_length_243_cov_17.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13583_length_243_cov_17.631148:1-243 [pilon] Processing NODE_11989_length_246_cov_23.256000:1-246 [pilon] NODE_11087_length_280_cov_6.062893:1-280 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 19, Coverage: 3, minDepth: 5 [pilon] Confirmed 88 of 280 bases (31.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11087_length_280_cov_6.062893:1-280 [pilon] Processing NODE_5504_length_577_cov_1.587719:1-577 [pilon] NODE_11921_length_249_cov_12.367188:1-249 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11921_length_249_cov_12.367188:1-249 [pilon] Processing NODE_1219_length_1380_cov_20.325655:1-1380 [pilon] NODE_10232_length_315_cov_29.381443:1-315 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 113, Coverage: 7, minDepth: 5 [pilon] Confirmed 163 of 315 bases (51.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10232_length_315_cov_29.381443:1-315 [pilon] Processing NODE_14727_length_243_cov_8.360656:1-243 [pilon] NODE_11531_length_263_cov_6.457746:1-263 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 19, Coverage: 3, minDepth: 5 [pilon] Confirmed 46 of 263 bases (17.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11531_length_263_cov_6.457746:1-263 [pilon] Processing NODE_3026_length_868_cov_15.504685:1-868 [pilon] NODE_5559_length_573_cov_16.150442:1-573 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 183, Coverage: 20, minDepth: 5 [pilon] Confirmed 420 of 573 bases (73.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5559_length_573_cov_16.150442:1-573 [pilon] Processing NODE_9317_length_354_cov_6.824034:1-354 [pilon] NODE_6315_length_516_cov_24.898734:1-516 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 226, Coverage: 25, minDepth: 6 [pilon] Confirmed 376 of 516 bases (72.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6315_length_516_cov_24.898734:1-516 [pilon] Processing NODE_173_length_2588_cov_30.985407:1-2588 [pilon] NODE_6221_length_523_cov_3.388060:1-523 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 41, Coverage: 10, minDepth: 5 [pilon] Confirmed 335 of 523 bases (64.05%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6221_length_523_cov_3.388060:1-523 [pilon] Processing NODE_2994_length_874_cov_6.296149:1-874 [pilon] NODE_2466_length_974_cov_27.873388:1-974 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 551, Coverage: 64, minDepth: 16 [pilon] Confirmed 611 of 974 bases (62.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2466_length_974_cov_27.873388:1-974 [pilon] Processing NODE_3098_length_853_cov_28.606557:1-853 [pilon] NODE_11466_length_264_cov_22.608392:1-264 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 77, Coverage: 4, minDepth: 5 [pilon] Confirmed 121 of 264 bases (45.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11466_length_264_cov_22.608392:1-264 [pilon] Processing NODE_2055_length_1071_cov_14.672632:1-1071 [pilon] NODE_2799_length_909_cov_16.119289:1-909 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 301, Coverage: 22, minDepth: 6 [pilon] Confirmed 617 of 909 bases (67.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2799_length_909_cov_16.119289:1-909 [pilon] Processing NODE_7218_length_459_cov_15.423077:1-459 [pilon] NODE_10797_length_294_cov_6.595376:1-294 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 18, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 294 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10797_length_294_cov_6.595376:1-294 [pilon] NODE_409_length_2037_cov_13.287056:1-2037 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 698, Coverage: 35, minDepth: 9 [pilon] Confirmed 1530 of 2037 bases (75.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_409_length_2037_cov_13.287056:1-2037 [pilon] Processing NODE_9275_length_354_cov_29.918455:1-354 [pilon] Processing NODE_14329_length_243_cov_11.639344:1-243 [pilon] NODE_9691_length_339_cov_7.197248:1-339 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 339 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9691_length_339_cov_7.197248:1-339 [pilon] Processing NODE_7141_length_463_cov_1.274854:1-463 [pilon] NODE_14054_length_243_cov_13.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14054_length_243_cov_13.795082:1-243 [pilon] Processing NODE_1081_length_1451_cov_30.878947:1-1451 [pilon] NODE_13812_length_243_cov_15.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13812_length_243_cov_15.549180:1-243 [pilon] Processing NODE_5114_length_609_cov_1.764344:1-609 [pilon] NODE_12934_length_243_cov_23.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12934_length_243_cov_23.598361:1-243 [pilon] Processing NODE_5835_length_552_cov_37.178654:1-552 [pilon] NODE_8196_length_408_cov_25.094077:1-408 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 193, Coverage: 30, minDepth: 8 [pilon] Confirmed 312 of 408 bases (76.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8196_length_408_cov_25.094077:1-408 [pilon] Processing NODE_8798_length_377_cov_46.503906:1-377 [pilon] NODE_14934_length_243_cov_6.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14934_length_243_cov_6.352459:1-243 [pilon] Processing NODE_4939_length_623_cov_3.956175:1-623 [pilon] NODE_7025_length_470_cov_11.128940:1-470 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 92, Coverage: 25, minDepth: 6 [pilon] Confirmed 388 of 470 bases (82.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7025_length_470_cov_11.128940:1-470 [pilon] Processing NODE_9837_length_333_cov_11.655660:1-333 [pilon] NODE_11766_length_255_cov_11.432836:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 54 of 255 bases (21.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11766_length_255_cov_11.432836:1-255 [pilon] Processing NODE_2532_length_960_cov_37.377831:1-960 [pilon] NODE_2697_length_929_cov_7.919554:1-929 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 171, Coverage: 15, minDepth: 5 [pilon] Confirmed 753 of 929 bases (81.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2697_length_929_cov_7.919554:1-929 [pilon] Processing NODE_5647_length_567_cov_25.652466:1-567 [pilon] NODE_14552_length_243_cov_9.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14552_length_243_cov_9.893443:1-243 [pilon] Processing NODE_8758_length_380_cov_8.081081:1-380 [pilon] NODE_7085_length_465_cov_59.619186:1-465 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 460, Coverage: 86, minDepth: 22 [pilon] Confirmed 390 of 465 bases (83.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7085_length_465_cov_59.619186:1-465 [pilon] Processing NODE_496_length_1912_cov_38.805137:1-1912 [pilon] NODE_11498_length_264_cov_7.965035:1-264 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 23, Coverage: 3, minDepth: 5 [pilon] Confirmed 58 of 264 bases (21.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11498_length_264_cov_7.965035:1-264 [pilon] Processing NODE_4688_length_644_cov_18.701721:1-644 [pilon] NODE_11989_length_246_cov_23.256000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 62, Coverage: 3, minDepth: 5 [pilon] Confirmed 94 of 246 bases (38.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11989_length_246_cov_23.256000:1-246 [pilon] Processing NODE_9565_length_343_cov_12.184685:1-343 [pilon] NODE_7704_length_432_cov_18.083601:1-432 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 125, Coverage: 22, minDepth: 6 [pilon] Confirmed 298 of 432 bases (68.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7704_length_432_cov_18.083601:1-432 [pilon] Processing NODE_11992_length_246_cov_21.504000:1-246 [pilon] NODE_2445_length_979_cov_26.397436:1-979 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 543, Coverage: 56, minDepth: 14 [pilon] Confirmed 914 of 979 bases (93.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2445_length_979_cov_26.397436:1-979 [pilon] Processing NODE_14434_length_243_cov_10.786885:1-243 [pilon] NODE_6323_length_515_cov_18.637056:1-515 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 197, Coverage: 18, minDepth: 5 [pilon] Confirmed 334 of 515 bases (64.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6323_length_515_cov_18.637056:1-515 [pilon] Processing NODE_12122_length_243_cov_43.418033:1-243 [pilon] NODE_2055_length_1071_cov_14.672632:1-1071 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 376, Coverage: 34, minDepth: 9 [pilon] Confirmed 1021 of 1071 bases (95.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2055_length_1071_cov_14.672632:1-1071 [pilon] Processing NODE_14199_length_243_cov_12.590164:1-243 [pilon] NODE_14727_length_243_cov_8.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14727_length_243_cov_8.360656:1-243 [pilon] Processing NODE_9056_length_363_cov_27.466942:1-363 [pilon] NODE_5504_length_577_cov_1.587719:1-577 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 203 of 577 bases (35.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5504_length_577_cov_1.587719:1-577 [pilon] Processing NODE_6800_length_483_cov_14.872928:1-483 [pilon] NODE_9317_length_354_cov_6.824034:1-354 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 36, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 354 bases (36.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9317_length_354_cov_6.824034:1-354 [pilon] Processing NODE_1401_length_1297_cov_18.723639:1-1297 [pilon] NODE_3026_length_868_cov_15.504685:1-868 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 266, Coverage: 21, minDepth: 5 [pilon] Confirmed 626 of 868 bases (72.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3026_length_868_cov_15.504685:1-868 [pilon] Processing NODE_14348_length_243_cov_11.483607:1-243 [pilon] NODE_2994_length_874_cov_6.296149:1-874 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 123, Coverage: 18, minDepth: 5 [pilon] Confirmed 583 of 874 bases (66.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2994_length_874_cov_6.296149:1-874 [pilon] Processing NODE_547_length_1859_cov_12.736479:1-1859 [pilon] NODE_1219_length_1380_cov_20.325655:1-1380 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 654, Coverage: 46, minDepth: 12 [pilon] Confirmed 1219 of 1380 bases (88.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1219_length_1380_cov_20.325655:1-1380 [pilon] Processing NODE_9834_length_333_cov_13.231132:1-333 [pilon] NODE_14329_length_243_cov_11.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14329_length_243_cov_11.639344:1-243 [pilon] Processing NODE_525_length_1892_cov_8.766234:1-1892 [pilon] NODE_7218_length_459_cov_15.423077:1-459 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 116, Coverage: 15, minDepth: 5 [pilon] Confirmed 309 of 459 bases (67.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7218_length_459_cov_15.423077:1-459 [pilon] Processing NODE_6035_length_538_cov_0.868106:1-538 [pilon] NODE_9275_length_354_cov_29.918455:1-354 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 144, Coverage: 12, minDepth: 5 [pilon] Confirmed 213 of 354 bases (60.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9275_length_354_cov_29.918455:1-354 [pilon] Processing NODE_4358_length_675_cov_6.218412:1-675 [pilon] NODE_3098_length_853_cov_28.606557:1-853 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 561, Coverage: 72, minDepth: 18 [pilon] Confirmed 762 of 853 bases (89.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3098_length_853_cov_28.606557:1-853 [pilon] Processing NODE_10922_length_288_cov_9.407186:1-288 [pilon] NODE_7141_length_463_cov_1.274854:1-463 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 230 of 463 bases (49.68%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7141_length_463_cov_1.274854:1-463 [pilon] Processing NODE_4298_length_681_cov_30.448214:1-681 [pilon] NODE_5835_length_552_cov_37.178654:1-552 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 377, Coverage: 62, minDepth: 16 [pilon] Confirmed 412 of 552 bases (74.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5835_length_552_cov_37.178654:1-552 [pilon] Processing NODE_4883_length_628_cov_5.151874:1-628 [pilon] NODE_5114_length_609_cov_1.764344:1-609 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 269 of 609 bases (44.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5114_length_609_cov_1.764344:1-609 [pilon] Processing NODE_5890_length_548_cov_38.229508:1-548 [pilon] NODE_4939_length_623_cov_3.956175:1-623 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 48, Coverage: 10, minDepth: 5 [pilon] Confirmed 462 of 623 bases (74.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4939_length_623_cov_3.956175:1-623 [pilon] Processing NODE_858_length_1589_cov_58.848093:1-1589 [pilon] NODE_5647_length_567_cov_25.652466:1-567 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 256, Coverage: 19, minDepth: 5 [pilon] Confirmed 371 of 567 bases (65.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5647_length_567_cov_25.652466:1-567 [pilon] Processing NODE_4605_length_652_cov_17.229755:1-652 [pilon] NODE_4688_length_644_cov_18.701721:1-644 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 240, Coverage: 38, minDepth: 10 [pilon] Confirmed 570 of 644 bases (88.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4688_length_644_cov_18.701721:1-644 [pilon] Processing NODE_4541_length_658_cov_1.368715:1-658 [pilon] NODE_8798_length_377_cov_46.503906:1-377 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 273, Coverage: 51, minDepth: 13 [pilon] Confirmed 309 of 377 bases (81.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8798_length_377_cov_46.503906:1-377 [pilon] Processing NODE_71_length_3290_cov_3.015778:1-3290 [pilon] NODE_9837_length_333_cov_11.655660:1-333 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 53, Coverage: 7, minDepth: 5 [pilon] Confirmed 214 of 333 bases (64.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9837_length_333_cov_11.655660:1-333 [pilon] Processing NODE_14621_length_243_cov_9.245902:1-243 [pilon] NODE_173_length_2588_cov_30.985407:1-2588 log: [pilon] frags shovill.bam: coverage 88 [pilon] Total Reads: 1851, Coverage: 88, minDepth: 22 [pilon] Confirmed 2459 of 2588 bases (95.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_173_length_2588_cov_30.985407:1-2588 [pilon] Processing NODE_10058_length_323_cov_15.034653:1-323 [pilon] NODE_8758_length_380_cov_8.081081:1-380 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 39, Coverage: 8, minDepth: 5 [pilon] Confirmed 228 of 380 bases (60.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8758_length_380_cov_8.081081:1-380 [pilon] Processing NODE_7272_length_456_cov_12.244776:1-456 [pilon] NODE_9565_length_343_cov_12.184685:1-343 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 189 of 343 bases (55.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9565_length_343_cov_12.184685:1-343 [pilon] Processing NODE_4292_length_682_cov_4.265597:1-682 [pilon] NODE_1081_length_1451_cov_30.878947:1-1451 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 1033, Coverage: 56, minDepth: 14 [pilon] Confirmed 1057 of 1451 bases (72.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1081_length_1451_cov_30.878947:1-1451 [pilon] Processing NODE_1738_length_1167_cov_1.651052:1-1167 [pilon] NODE_2532_length_960_cov_37.377831:1-960 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 701, Coverage: 75, minDepth: 19 [pilon] Confirmed 766 of 960 bases (79.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2532_length_960_cov_37.377831:1-960 [pilon] Processing NODE_6647_length_494_cov_24.018767:1-494 [pilon] NODE_14199_length_243_cov_12.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14199_length_243_cov_12.590164:1-243 [pilon] Processing NODE_3314_length_813_cov_1.406069:1-813 [pilon] NODE_11992_length_246_cov_21.504000:1-246 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 160 of 246 bases (65.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11992_length_246_cov_21.504000:1-246 [pilon] Processing NODE_2771_length_914_cov_3.633039:1-914 [pilon] NODE_12122_length_243_cov_43.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 112, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12122_length_243_cov_43.418033:1-243 [pilon] Processing NODE_6698_length_490_cov_24.899729:1-490 [pilon] NODE_496_length_1912_cov_38.805137:1-1912 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 1690, Coverage: 66, minDepth: 17 [pilon] Confirmed 1694 of 1912 bases (88.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_496_length_1912_cov_38.805137:1-1912 [pilon] Processing NODE_10588_length_302_cov_10.497238:1-302 [pilon] NODE_14434_length_243_cov_10.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14434_length_243_cov_10.786885:1-243 [pilon] Processing NODE_8183_length_409_cov_3.697917:1-409 [pilon] NODE_9056_length_363_cov_27.466942:1-363 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 128, Coverage: 5, minDepth: 5 [pilon] Confirmed 143 of 363 bases (39.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9056_length_363_cov_27.466942:1-363 [pilon] Processing NODE_10330_length_312_cov_18.602094:1-312 [pilon] NODE_525_length_1892_cov_8.766234:1-1892 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 496, Coverage: 31, minDepth: 8 [pilon] Confirmed 1509 of 1892 bases (79.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_525_length_1892_cov_8.766234:1-1892 [pilon] Processing NODE_890_length_1568_cov_31.639254:1-1568 [pilon] NODE_6800_length_483_cov_14.872928:1-483 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 123, Coverage: 13, minDepth: 5 [pilon] Confirmed 340 of 483 bases (70.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6800_length_483_cov_14.872928:1-483 [pilon] Processing NODE_5644_length_567_cov_29.381166:1-567 [pilon] NODE_10922_length_288_cov_9.407186:1-288 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10922_length_288_cov_9.407186:1-288 [pilon] Processing NODE_13622_length_243_cov_17.295082:1-243 [pilon] NODE_9834_length_333_cov_13.231132:1-333 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 53, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 333 bases (38.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9834_length_333_cov_13.231132:1-333 [pilon] Processing NODE_5034_length_616_cov_27.242424:1-616 [pilon] NODE_4883_length_628_cov_5.151874:1-628 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 65, Coverage: 8, minDepth: 5 [pilon] Confirmed 352 of 628 bases (56.05%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_14348_length_243_cov_11.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4883_length_628_cov_5.151874:1-628 [pilon] Finished processing NODE_14348_length_243_cov_11.483607:1-243 [pilon] Processing NODE_11000_length_285_cov_6.048780:1-285 [pilon] Processing NODE_957_length_1522_cov_21.349036:1-1522 [pilon] NODE_4605_length_652_cov_17.229755:1-652 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 227, Coverage: 24, minDepth: 6 [pilon] Confirmed 609 of 652 bases (93.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4605_length_652_cov_17.229755:1-652 [pilon] Processing NODE_14351_length_243_cov_11.450820:1-243 [pilon] NODE_547_length_1859_cov_12.736479:1-1859 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 668, Coverage: 34, minDepth: 9 [pilon] Confirmed 1522 of 1859 bases (81.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_547_length_1859_cov_12.736479:1-1859 [pilon] Processing NODE_799_length_1626_cov_34.685050:1-1626 [pilon] NODE_1401_length_1297_cov_18.723639:1-1297 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 491, Coverage: 43, minDepth: 11 [pilon] Confirmed 811 of 1297 bases (62.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1401_length_1297_cov_18.723639:1-1297 [pilon] Processing NODE_12710_length_243_cov_26.081967:1-243 [pilon] NODE_4541_length_658_cov_1.368715:1-658 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 28, Coverage: 5, minDepth: 5 [pilon] Confirmed 318 of 658 bases (48.33%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4541_length_658_cov_1.368715:1-658 [pilon] Processing NODE_11020_length_282_cov_34.981366:1-282 [pilon] NODE_4358_length_675_cov_6.218412:1-675 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 87, Coverage: 9, minDepth: 5 [pilon] Confirmed 331 of 675 bases (49.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4358_length_675_cov_6.218412:1-675 [pilon] Processing NODE_6337_length_514_cov_36.977099:1-514 [pilon] NODE_4298_length_681_cov_30.448214:1-681 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 353, Coverage: 50, minDepth: 13 [pilon] Confirmed 535 of 681 bases (78.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4298_length_681_cov_30.448214:1-681 [pilon] Processing NODE_10593_length_301_cov_22.344444:1-301 [pilon] NODE_6035_length_538_cov_0.868106:1-538 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 538 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6035_length_538_cov_0.868106:1-538 [pilon] Processing NODE_10796_length_294_cov_6.630058:1-294 [pilon] NODE_858_length_1589_cov_58.848093:1-1589 log: [pilon] frags shovill.bam: coverage 139 [pilon] Total Reads: 1920, Coverage: 139, minDepth: 35 [pilon] Confirmed 1498 of 1589 bases (94.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_858_length_1589_cov_58.848093:1-1589 [pilon] Processing NODE_1691_length_1185_cov_24.116541:1-1185 [pilon] NODE_7272_length_456_cov_12.244776:1-456 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 88, Coverage: 17, minDepth: 5 [pilon] Confirmed 369 of 456 bases (80.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7272_length_456_cov_12.244776:1-456 [pilon] Processing NODE_12534_length_243_cov_28.581967:1-243 [pilon] NODE_5890_length_548_cov_38.229508:1-548 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 369, Coverage: 61, minDepth: 15 [pilon] Confirmed 478 of 548 bases (87.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5890_length_548_cov_38.229508:1-548 [pilon] Processing NODE_7449_length_446_cov_3.258462:1-446 [pilon] NODE_14621_length_243_cov_9.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14621_length_243_cov_9.245902:1-243 [pilon] Processing NODE_361_length_2108_cov_2.399094:1-2108 [pilon] NODE_10058_length_323_cov_15.034653:1-323 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 65, Coverage: 6, minDepth: 5 [pilon] Confirmed 178 of 323 bases (55.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10058_length_323_cov_15.034653:1-323 [pilon] Processing NODE_15060_length_239_cov_23.440678:1-239 [pilon] NODE_1738_length_1167_cov_1.651052:1-1167 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 694 of 1167 bases (59.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1738_length_1167_cov_1.651052:1-1167 [pilon] Processing NODE_3321_length_812_cov_1.017366:1-812 [pilon] NODE_4292_length_682_cov_4.265597:1-682 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 55, Coverage: 10, minDepth: 5 [pilon] Confirmed 541 of 682 bases (79.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4292_length_682_cov_4.265597:1-682 [pilon] Processing NODE_10590_length_301_cov_39.600000:1-301 [pilon] NODE_71_length_3290_cov_3.015778:1-3290 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 246, Coverage: 10, minDepth: 5 [pilon] Confirmed 2605 of 3290 bases (79.18%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_71_length_3290_cov_3.015778:1-3290 [pilon] Processing NODE_14975_length_243_cov_5.762295:1-243 [pilon] NODE_8183_length_409_cov_3.697917:1-409 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 37, Coverage: 9, minDepth: 5 [pilon] Confirmed 341 of 409 bases (83.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8183_length_409_cov_3.697917:1-409 [pilon] Processing NODE_14993_length_243_cov_5.540984:1-243 [pilon] NODE_6647_length_494_cov_24.018767:1-494 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 210, Coverage: 27, minDepth: 7 [pilon] Confirmed 404 of 494 bases (81.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6647_length_494_cov_24.018767:1-494 [pilon] Processing NODE_358_length_2115_cov_21.604814:1-2115 [pilon] NODE_2771_length_914_cov_3.633039:1-914 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 61, Coverage: 9, minDepth: 5 [pilon] Confirmed 559 of 914 bases (61.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2771_length_914_cov_3.633039:1-914 [pilon] Processing NODE_14495_length_243_cov_10.319672:1-243 [pilon] NODE_3314_length_813_cov_1.406069:1-813 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 375 of 813 bases (46.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3314_length_813_cov_1.406069:1-813 [pilon] Processing NODE_1641_length_1203_cov_22.224584:1-1203 [pilon] NODE_10588_length_302_cov_10.497238:1-302 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 39, Coverage: 6, minDepth: 5 [pilon] Confirmed 212 of 302 bases (70.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10588_length_302_cov_10.497238:1-302 [pilon] Processing NODE_13727_length_243_cov_16.204918:1-243 [pilon] NODE_6698_length_490_cov_24.899729:1-490 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 223, Coverage: 41, minDepth: 10 [pilon] Confirmed 411 of 490 bases (83.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6698_length_490_cov_24.899729:1-490 [pilon] Processing NODE_13353_length_243_cov_19.827869:1-243 [pilon] NODE_11000_length_285_cov_6.048780:1-285 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11000_length_285_cov_6.048780:1-285 [pilon] Processing NODE_6964_length_474_cov_1.062323:1-474 [pilon] NODE_890_length_1568_cov_31.639254:1-1568 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 1010, Coverage: 76, minDepth: 19 [pilon] Confirmed 1377 of 1568 bases (87.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_890_length_1568_cov_31.639254:1-1568 [pilon] Processing NODE_1725_length_1171_cov_20.661905:1-1171 [pilon] NODE_11020_length_282_cov_34.981366:1-282 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 114, Coverage: 8, minDepth: 5 [pilon] Confirmed 198 of 282 bases (70.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11020_length_282_cov_34.981366:1-282 [pilon] Processing NODE_10297_length_313_cov_22.286458:1-313 [pilon] NODE_10330_length_312_cov_18.602094:1-312 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 72, Coverage: 10, minDepth: 5 [pilon] Confirmed 244 of 312 bases (78.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10330_length_312_cov_18.602094:1-312 [pilon] Processing NODE_7826_length_426_cov_11.888525:1-426 [pilon] NODE_7449_length_446_cov_3.258462:1-446 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 27, Coverage: 8, minDepth: 5 [pilon] Confirmed 296 of 446 bases (66.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7449_length_446_cov_3.258462:1-446 [pilon] Processing NODE_12513_length_243_cov_28.877049:1-243 [pilon] NODE_5644_length_567_cov_29.381166:1-567 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 316, Coverage: 33, minDepth: 8 [pilon] Confirmed 394 of 567 bases (69.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5644_length_567_cov_29.381166:1-567 [pilon] Processing NODE_1253_length_1363_cov_19.435588:1-1363 [pilon] NODE_13622_length_243_cov_17.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13622_length_243_cov_17.295082:1-243 [pilon] Processing NODE_14755_length_243_cov_8.057377:1-243 [pilon] NODE_10593_length_301_cov_22.344444:1-301 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 82, Coverage: 8, minDepth: 5 [pilon] Confirmed 176 of 301 bases (58.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10593_length_301_cov_22.344444:1-301 [pilon] Processing NODE_5942_length_545_cov_10.799528:1-545 [pilon] NODE_5034_length_616_cov_27.242424:1-616 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 336, Coverage: 46, minDepth: 12 [pilon] Confirmed 471 of 616 bases (76.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5034_length_616_cov_27.242424:1-616 [pilon] Processing NODE_8878_length_373_cov_7.007937:1-373 [pilon] NODE_12710_length_243_cov_26.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12710_length_243_cov_26.081967:1-243 [pilon] Processing NODE_5922_length_546_cov_13.075294:1-546 [pilon] NODE_6337_length_514_cov_36.977099:1-514 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 319, Coverage: 48, minDepth: 12 [pilon] Confirmed 451 of 514 bases (87.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6337_length_514_cov_36.977099:1-514 [pilon] Processing NODE_8457_length_396_cov_16.829091:1-396 [pilon] NODE_957_length_1522_cov_21.349036:1-1522 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 757, Coverage: 52, minDepth: 13 [pilon] Confirmed 1246 of 1522 bases (81.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_957_length_1522_cov_21.349036:1-1522 [pilon] Processing NODE_10805_length_293_cov_9.877907:1-293 [pilon] NODE_14351_length_243_cov_11.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14351_length_243_cov_11.450820:1-243 [pilon] Processing NODE_12102_length_243_cov_51.770492:1-243 [pilon] NODE_799_length_1626_cov_34.685050:1-1626 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 1202, Coverage: 81, minDepth: 20 [pilon] Confirmed 1530 of 1626 bases (94.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_799_length_1626_cov_34.685050:1-1626 [pilon] Processing NODE_10_length_5871_cov_16.655304:1-5871 [pilon] NODE_10796_length_294_cov_6.630058:1-294 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 27, Coverage: 3, minDepth: 5 [pilon] Confirmed 110 of 294 bases (37.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10796_length_294_cov_6.630058:1-294 [pilon] Processing NODE_3465_length_789_cov_23.923653:1-789 [pilon] NODE_12534_length_243_cov_28.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12534_length_243_cov_28.581967:1-243 [pilon] Processing NODE_879_length_1575_cov_28.340440:1-1575 [pilon] NODE_1691_length_1185_cov_24.116541:1-1185 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 623, Coverage: 59, minDepth: 15 [pilon] Confirmed 1012 of 1185 bases (85.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1691_length_1185_cov_24.116541:1-1185 [pilon] Processing NODE_2284_length_1014_cov_27.167973:1-1014 [pilon] NODE_15060_length_239_cov_23.440678:1-239 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 72, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 239 bases (54.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15060_length_239_cov_23.440678:1-239 [pilon] Processing NODE_13477_length_243_cov_18.614754:1-243 [pilon] NODE_10590_length_301_cov_39.600000:1-301 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 142, Coverage: 22, minDepth: 6 [pilon] Confirmed 252 of 301 bases (83.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10590_length_301_cov_39.600000:1-301 [pilon] Processing NODE_9999_length_325_cov_22.799020:1-325 [pilon] NODE_14975_length_243_cov_5.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14975_length_243_cov_5.762295:1-243 [pilon] Processing NODE_1174_length_1408_cov_15.627040:1-1408 [pilon] NODE_361_length_2108_cov_2.399094:1-2108 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 141, Coverage: 9, minDepth: 5 [pilon] Confirmed 1637 of 2108 bases (77.66%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_361_length_2108_cov_2.399094:1-2108 [pilon] Processing NODE_1049_length_1468_cov_23.115071:1-1468 [pilon] NODE_14993_length_243_cov_5.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14993_length_243_cov_5.540984:1-243 [pilon] Processing NODE_13419_length_243_cov_19.122951:1-243 [pilon] NODE_6964_length_474_cov_1.062323:1-474 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 474 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6964_length_474_cov_1.062323:1-474 [pilon] Processing NODE_744_length_1671_cov_2.585806:1-1671 [pilon] NODE_3321_length_812_cov_1.017366:1-812 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 30, Coverage: 4, minDepth: 5 [pilon] Confirmed 298 of 812 bases (36.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3321_length_812_cov_1.017366:1-812 [pilon] Processing NODE_9488_length_346_cov_12.671111:1-346 [pilon] NODE_13353_length_243_cov_19.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13353_length_243_cov_19.827869:1-243 [pilon] Processing NODE_6901_length_477_cov_22.792135:1-477 [pilon] NODE_14495_length_243_cov_10.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14495_length_243_cov_10.319672:1-243 [pilon] Processing NODE_6968_length_473_cov_47.582386:1-473 [pilon] NODE_13727_length_243_cov_16.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13727_length_243_cov_16.204918:1-243 [pilon] Processing NODE_12436_length_243_cov_30.229508:1-243 [pilon] NODE_10297_length_313_cov_22.286458:1-313 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 93, Coverage: 7, minDepth: 5 [pilon] Confirmed 204 of 313 bases (65.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10297_length_313_cov_22.286458:1-313 [pilon] Processing NODE_1970_length_1094_cov_15.007194:1-1094 [pilon] NODE_358_length_2115_cov_21.604814:1-2115 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 988, Coverage: 40, minDepth: 10 [pilon] Confirmed 1820 of 2115 bases (86.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_358_length_2115_cov_21.604814:1-2115 [pilon] Processing NODE_14436_length_243_cov_10.778689:1-243 [pilon] NODE_1641_length_1203_cov_22.224584:1-1203 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 569, Coverage: 35, minDepth: 9 [pilon] Confirmed 975 of 1203 bases (81.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1641_length_1203_cov_22.224584:1-1203 [pilon] Processing NODE_8975_length_367_cov_68.760163:1-367 [pilon] NODE_12513_length_243_cov_28.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12513_length_243_cov_28.877049:1-243 [pilon] Processing NODE_4841_length_631_cov_27.494118:1-631 [pilon] NODE_1725_length_1171_cov_20.661905:1-1171 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 533, Coverage: 34, minDepth: 9 [pilon] Confirmed 975 of 1171 bases (83.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1725_length_1171_cov_20.661905:1-1171 [pilon] Processing NODE_14120_length_243_cov_13.327869:1-243 [pilon] NODE_7826_length_426_cov_11.888525:1-426 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 86, Coverage: 15, minDepth: 5 [pilon] Confirmed 352 of 426 bases (82.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7826_length_426_cov_11.888525:1-426 [pilon] Processing NODE_10631_length_300_cov_17.871508:1-300 [pilon] NODE_14755_length_243_cov_8.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14755_length_243_cov_8.057377:1-243 [pilon] Processing NODE_6750_length_486_cov_21.923288:1-486 [pilon] NODE_1253_length_1363_cov_19.435588:1-1363 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 698, Coverage: 54, minDepth: 14 [pilon] Confirmed 1209 of 1363 bases (88.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1253_length_1363_cov_19.435588:1-1363 [pilon] Processing NODE_14892_length_243_cov_6.786885:1-243 [pilon] NODE_5922_length_546_cov_13.075294:1-546 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 147, Coverage: 5, minDepth: 5 [pilon] Confirmed 256 of 546 bases (46.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5922_length_546_cov_13.075294:1-546 [pilon] Processing NODE_8868_length_373_cov_49.710317:1-373 [pilon] NODE_744_length_1671_cov_2.585806:1-1671 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 123, Coverage: 9, minDepth: 5 [pilon] Confirmed 1334 of 1671 bases (79.83%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_744_length_1671_cov_2.585806:1-1671 [pilon] Processing NODE_11055_length_281_cov_31.850000:1-281 [pilon] NODE_8457_length_396_cov_16.829091:1-396 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 102, Coverage: 13, minDepth: 5 [pilon] Confirmed 312 of 396 bases (78.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8457_length_396_cov_16.829091:1-396 [pilon] Processing NODE_3566_length_774_cov_44.261868:1-774 [pilon] NODE_10805_length_293_cov_9.877907:1-293 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 41, Coverage: 5, minDepth: 5 [pilon] Confirmed 210 of 293 bases (71.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_8878_length_373_cov_7.007937:1-373 log: [pilon] Finished processing NODE_10805_length_293_cov_9.877907:1-293 [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 43, Coverage: 3, minDepth: 5 [pilon] Confirmed 113 of 373 bases (30.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8878_length_373_cov_7.007937:1-373 [pilon] Processing NODE_1831_length_1134_cov_39.017769:1-1134 [pilon] Processing NODE_382_length_2071_cov_3.298462:1-2071 [pilon] NODE_5942_length_545_cov_10.799528:1-545 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 160, Coverage: 24, minDepth: 6 [pilon] Confirmed 445 of 545 bases (81.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5942_length_545_cov_10.799528:1-545 [pilon] Processing NODE_739_length_1672_cov_32.618956:1-1672 [pilon] NODE_12102_length_243_cov_51.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 125, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12102_length_243_cov_51.770492:1-243 [pilon] Processing NODE_11939_length_248_cov_14.811024:1-248 [pilon] NODE_6901_length_477_cov_22.792135:1-477 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 180, Coverage: 25, minDepth: 6 [pilon] Confirmed 418 of 477 bases (87.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6901_length_477_cov_22.792135:1-477 [pilon] Processing NODE_8607_length_387_cov_30.097744:1-387 [pilon] NODE_13477_length_243_cov_18.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13477_length_243_cov_18.614754:1-243 [pilon] Processing NODE_6040_length_537_cov_19.144231:1-537 [pilon] NODE_9999_length_325_cov_22.799020:1-325 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 115, Coverage: 10, minDepth: 5 [pilon] Confirmed 224 of 325 bases (68.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9999_length_325_cov_22.799020:1-325 [pilon] Processing NODE_7276_length_456_cov_2.761194:1-456 [pilon] NODE_3465_length_789_cov_23.923653:1-789 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 404, Coverage: 39, minDepth: 10 [pilon] Confirmed 617 of 789 bases (78.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3465_length_789_cov_23.923653:1-789 [pilon] Processing NODE_15239_length_131_cov_143.300000:1-131 [pilon] NODE_13419_length_243_cov_19.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13419_length_243_cov_19.122951:1-243 [pilon] Processing NODE_2815_length_907_cov_1.924936:1-907 [pilon] NODE_2284_length_1014_cov_27.167973:1-1014 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 611, Coverage: 72, minDepth: 18 [pilon] Confirmed 795 of 1014 bases (78.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2284_length_1014_cov_27.167973:1-1014 [pilon] Processing NODE_10282_length_314_cov_22.549223:1-314 [pilon] NODE_1174_length_1408_cov_15.627040:1-1408 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 493, Coverage: 42, minDepth: 11 [pilon] Confirmed 1199 of 1408 bases (85.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1174_length_1408_cov_15.627040:1-1408 [pilon] Processing NODE_7488_length_444_cov_1.315789:1-444 [pilon] NODE_879_length_1575_cov_28.340440:1-1575 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 1057, Coverage: 52, minDepth: 13 [pilon] Confirmed 1400 of 1575 bases (88.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_879_length_1575_cov_28.340440:1-1575 [pilon] Processing NODE_5770_length_558_cov_3.201373:1-558 [pilon] NODE_1970_length_1094_cov_15.007194:1-1094 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 364, Coverage: 24, minDepth: 6 [pilon] Confirmed 983 of 1094 bases (89.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1970_length_1094_cov_15.007194:1-1094 [pilon] Processing NODE_2696_length_930_cov_11.249691:1-930 [pilon] NODE_9488_length_346_cov_12.671111:1-346 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 71, Coverage: 7, minDepth: 5 [pilon] Confirmed 213 of 346 bases (61.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9488_length_346_cov_12.671111:1-346 [pilon] Processing NODE_1411_length_1295_cov_13.962521:1-1295 [pilon] NODE_1049_length_1468_cov_23.115071:1-1468 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 704, Coverage: 58, minDepth: 15 [pilon] Confirmed 1252 of 1468 bases (85.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1049_length_1468_cov_23.115071:1-1468 [pilon] Processing NODE_3598_length_769_cov_8.229938:1-769 [pilon] NODE_10_length_5871_cov_16.655304:1-5871 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 2233, Coverage: 47, minDepth: 12 [pilon] Confirmed 4837 of 5871 bases (82.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10_length_5871_cov_16.655304:1-5871 [pilon] Processing NODE_13449_length_243_cov_18.836066:1-243 [pilon] NODE_4841_length_631_cov_27.494118:1-631 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 331, Coverage: 39, minDepth: 10 [pilon] Confirmed 570 of 631 bases (90.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4841_length_631_cov_27.494118:1-631 [pilon] Processing NODE_3721_length_752_cov_3.662441:1-752 [pilon] NODE_6968_length_473_cov_47.582386:1-473 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 379, Coverage: 61, minDepth: 15 [pilon] Confirmed 431 of 473 bases (91.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6968_length_473_cov_47.582386:1-473 [pilon] Processing NODE_3558_length_776_cov_27.082443:1-776 [pilon] NODE_12436_length_243_cov_30.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12436_length_243_cov_30.229508:1-243 [pilon] Processing NODE_465_length_1954_cov_2.886525:1-1954 [pilon] NODE_14436_length_243_cov_10.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14436_length_243_cov_10.778689:1-243 [pilon] Processing NODE_7391_length_449_cov_1.073171:1-449 [pilon] NODE_8975_length_367_cov_68.760163:1-367 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 379, Coverage: 68, minDepth: 17 [pilon] Confirmed 320 of 367 bases (87.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8975_length_367_cov_68.760163:1-367 [pilon] Processing NODE_7122_length_464_cov_58.177843:1-464 [pilon] NODE_11055_length_281_cov_31.850000:1-281 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 96, Coverage: 5, minDepth: 5 [pilon] Confirmed 133 of 281 bases (47.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11055_length_281_cov_31.850000:1-281 [pilon] Processing NODE_13561_length_243_cov_17.786885:1-243 [pilon] NODE_6750_length_486_cov_21.923288:1-486 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 208, Coverage: 17, minDepth: 5 [pilon] Confirmed 313 of 486 bases (64.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6750_length_486_cov_21.923288:1-486 [pilon] Processing NODE_10498_length_304_cov_46.568306:1-304 [pilon] NODE_14120_length_243_cov_13.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14120_length_243_cov_13.327869:1-243 [pilon] Processing NODE_9666_length_339_cov_16.270642:1-339 [pilon] NODE_10631_length_300_cov_17.871508:1-300 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 76, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 300 bases (43.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10631_length_300_cov_17.871508:1-300 [pilon] Processing NODE_4307_length_680_cov_33.030411:1-680 [pilon] NODE_14892_length_243_cov_6.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14892_length_243_cov_6.786885:1-243 [pilon] Processing NODE_14447_length_243_cov_10.704918:1-243 [pilon] NODE_8607_length_387_cov_30.097744:1-387 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 176, Coverage: 33, minDepth: 8 [pilon] Confirmed 342 of 387 bases (88.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8607_length_387_cov_30.097744:1-387 [pilon] Processing NODE_8203_length_408_cov_18.355401:1-408 [pilon] NODE_3566_length_774_cov_44.261868:1-774 log: [pilon] frags shovill.bam: coverage 88 [pilon] Total Reads: 655, Coverage: 88, minDepth: 22 [pilon] Confirmed 672 of 774 bases (86.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3566_length_774_cov_44.261868:1-774 [pilon] Processing NODE_6014_length_540_cov_0.813842:1-540 [pilon] NODE_382_length_2071_cov_3.298462:1-2071 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 156, Coverage: 10, minDepth: 5 [pilon] Confirmed 1615 of 2071 bases (77.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_382_length_2071_cov_3.298462:1-2071 [pilon] Processing NODE_8024_length_417_cov_18.070946:1-417 [pilon] NODE_3721_length_752_cov_3.662441:1-752 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 55, Coverage: 8, minDepth: 5 [pilon] Confirmed 475 of 752 bases (63.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3721_length_752_cov_3.662441:1-752 [pilon] Processing NODE_12982_length_243_cov_23.139344:1-243 [pilon] NODE_1831_length_1134_cov_39.017769:1-1134 log: [pilon] frags shovill.bam: coverage 89 [pilon] Total Reads: 917, Coverage: 89, minDepth: 22 [pilon] Confirmed 1040 of 1134 bases (91.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1831_length_1134_cov_39.017769:1-1134 [pilon] Processing NODE_5784_length_557_cov_1.247706:1-557 [pilon] NODE_8868_length_373_cov_49.710317:1-373 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 288, Coverage: 38, minDepth: 10 [pilon] Confirmed 314 of 373 bases (84.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8868_length_373_cov_49.710317:1-373 [pilon] Processing NODE_15147_length_194_cov_5.397260:1-194 [pilon] NODE_11939_length_248_cov_14.811024:1-248 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 37, Coverage: 3, minDepth: 5 [pilon] Confirmed 33 of 248 bases (13.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11939_length_248_cov_14.811024:1-248 [pilon] Processing NODE_7587_length_438_cov_21.507886:1-438 [pilon] NODE_2696_length_930_cov_11.249691:1-930 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 231, Coverage: 12, minDepth: 5 [pilon] Confirmed 698 of 930 bases (75.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2696_length_930_cov_11.249691:1-930 [pilon] Processing NODE_3640_length_763_cov_3.188474:1-763 [pilon] NODE_739_length_1672_cov_32.618956:1-1672 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 1175, Coverage: 67, minDepth: 17 [pilon] Confirmed 1484 of 1672 bases (88.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_739_length_1672_cov_32.618956:1-1672 [pilon] Processing NODE_952_length_1527_cov_13.939545:1-1527 [pilon] NODE_7488_length_444_cov_1.315789:1-444 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 206 of 444 bases (46.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7488_length_444_cov_1.315789:1-444 [pilon] Processing NODE_12565_length_243_cov_28.073770:1-243 [pilon] NODE_7276_length_456_cov_2.761194:1-456 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 26, Coverage: 7, minDepth: 5 [pilon] Confirmed 292 of 456 bases (64.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7276_length_456_cov_2.761194:1-456 [pilon] Processing NODE_1660_length_1197_cov_2.183086:1-1197 [pilon] NODE_15239_length_131_cov_143.300000:1-131 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 131 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15239_length_131_cov_143.300000:1-131 [pilon] Processing NODE_14246_length_243_cov_12.270492:1-243 [pilon] NODE_2815_length_907_cov_1.924936:1-907 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 47, Coverage: 7, minDepth: 5 [pilon] Confirmed 666 of 907 bases (73.43%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2815_length_907_cov_1.924936:1-907 [pilon] Processing NODE_11348_length_270_cov_15.442953:1-270 [pilon] NODE_10282_length_314_cov_22.549223:1-314 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 82, Coverage: 4, minDepth: 5 [pilon] Confirmed 150 of 314 bases (47.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10282_length_314_cov_22.549223:1-314 [pilon] Processing NODE_14066_length_243_cov_13.704918:1-243 [pilon] NODE_6040_length_537_cov_19.144231:1-537 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 195, Coverage: 25, minDepth: 6 [pilon] Confirmed 367 of 537 bases (68.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6040_length_537_cov_19.144231:1-537 [pilon] Processing NODE_1107_length_1437_cov_20.102584:1-1437 [pilon] NODE_5770_length_558_cov_3.201373:1-558 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 39, Coverage: 8, minDepth: 5 [pilon] Confirmed 374 of 558 bases (67.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5770_length_558_cov_3.201373:1-558 [pilon] Processing NODE_1825_length_1137_cov_3.534449:1-1137 [pilon] NODE_13449_length_243_cov_18.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13449_length_243_cov_18.836066:1-243 [pilon] Processing NODE_4357_length_675_cov_7.996390:1-675 [pilon] NODE_3598_length_769_cov_8.229938:1-769 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 135, Coverage: 22, minDepth: 6 [pilon] Confirmed 510 of 769 bases (66.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3598_length_769_cov_8.229938:1-769 [pilon] Processing NODE_8152_length_411_cov_7.979310:1-411 [pilon] NODE_1411_length_1295_cov_13.962521:1-1295 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 357, Coverage: 23, minDepth: 6 [pilon] Confirmed 1031 of 1295 bases (79.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1411_length_1295_cov_13.962521:1-1295 [pilon] Processing NODE_7200_length_460_cov_1.292035:1-460 [pilon] NODE_465_length_1954_cov_2.886525:1-1954 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 136, Coverage: 9, minDepth: 5 [pilon] Confirmed 1623 of 1954 bases (83.06%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_465_length_1954_cov_2.886525:1-1954 [pilon] Processing NODE_10212_length_316_cov_28.364103:1-316 [pilon] NODE_13561_length_243_cov_17.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13561_length_243_cov_17.786885:1-243 [pilon] Processing NODE_8548_length_391_cov_23.037037:1-391 [pilon] NODE_3558_length_776_cov_27.082443:1-776 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 477, Coverage: 38, minDepth: 10 [pilon] Confirmed 634 of 776 bases (81.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3558_length_776_cov_27.082443:1-776 [pilon] Processing NODE_2755_length_917_cov_19.400754:1-917 [pilon] NODE_7391_length_449_cov_1.073171:1-449 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 178 of 449 bases (39.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7391_length_449_cov_1.073171:1-449 [pilon] Processing NODE_715_length_1691_cov_15.928025:1-1691 [pilon] NODE_10498_length_304_cov_46.568306:1-304 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 178, Coverage: 29, minDepth: 7 [pilon] Confirmed 269 of 304 bases (88.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10498_length_304_cov_46.568306:1-304 [pilon] Processing NODE_532_length_1878_cov_3.451907:1-1878 [pilon] NODE_8203_length_408_cov_18.355401:1-408 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 120, Coverage: 10, minDepth: 5 [pilon] Confirmed 246 of 408 bases (60.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8203_length_408_cov_18.355401:1-408 [pilon] Processing NODE_2186_length_1037_cov_32.878821:1-1037 [pilon] NODE_7122_length_464_cov_58.177843:1-464 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 465, Coverage: 75, minDepth: 19 [pilon] Confirmed 427 of 464 bases (92.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7122_length_464_cov_58.177843:1-464 [pilon] Processing NODE_1380_length_1304_cov_27.859679:1-1304 [pilon] NODE_12982_length_243_cov_23.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12982_length_243_cov_23.139344:1-243 [pilon] Processing NODE_3012_length_871_cov_3.838667:1-871 [pilon] NODE_9666_length_339_cov_16.270642:1-339 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 73, Coverage: 9, minDepth: 5 [pilon] Confirmed 222 of 339 bases (65.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9666_length_339_cov_16.270642:1-339 [pilon] Processing NODE_13880_length_243_cov_15.032787:1-243 [pilon] NODE_14447_length_243_cov_10.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14447_length_243_cov_10.704918:1-243 [pilon] Processing NODE_1074_length_1454_cov_35.200300:1-1454 [pilon] NODE_4307_length_680_cov_33.030411:1-680 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 428, Coverage: 61, minDepth: 15 [pilon] Confirmed 543 of 680 bases (79.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4307_length_680_cov_33.030411:1-680 [pilon] Processing NODE_1869_length_1122_cov_2.328671:1-1122 [pilon] NODE_6014_length_540_cov_0.813842:1-540 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 134 of 540 bases (24.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6014_length_540_cov_0.813842:1-540 [pilon] Processing NODE_4247_length_688_cov_10.774250:1-688 [pilon] NODE_8548_length_391_cov_23.037037:1-391 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 146, Coverage: 14, minDepth: 5 [pilon] Confirmed 321 of 391 bases (82.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8548_length_391_cov_23.037037:1-391 [pilon] Processing NODE_2716_length_926_cov_7.763975:1-926 [pilon] NODE_15147_length_194_cov_5.397260:1-194 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 194 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15147_length_194_cov_5.397260:1-194 [pilon] Processing NODE_6825_length_481_cov_46.300000:1-481 [pilon] NODE_8024_length_417_cov_18.070946:1-417 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 101, Coverage: 9, minDepth: 5 [pilon] Confirmed 247 of 417 bases (59.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8024_length_417_cov_18.070946:1-417 [pilon] Processing NODE_14832_length_243_cov_7.393443:1-243 [pilon] NODE_3640_length_763_cov_3.188474:1-763 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 44, Coverage: 7, minDepth: 5 [pilon] Confirmed 533 of 763 bases (69.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3640_length_763_cov_3.188474:1-763 [pilon] Processing NODE_5334_length_590_cov_14.938166:1-590 [pilon] NODE_5784_length_557_cov_1.247706:1-557 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 399 of 557 bases (71.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5784_length_557_cov_1.247706:1-557 [pilon] Processing NODE_5291_length_593_cov_22.718220:1-593 [pilon] NODE_7587_length_438_cov_21.507886:1-438 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 168, Coverage: 24, minDepth: 6 [pilon] Confirmed 290 of 438 bases (66.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7587_length_438_cov_21.507886:1-438 [pilon] Processing NODE_10011_length_324_cov_31.369458:1-324 [pilon] NODE_12565_length_243_cov_28.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12565_length_243_cov_28.073770:1-243 [pilon] Processing NODE_5467_length_579_cov_47.262009:1-579 [pilon] NODE_532_length_1878_cov_3.451907:1-1878 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 149, Coverage: 10, minDepth: 5 [pilon] Confirmed 1354 of 1878 bases (72.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_532_length_1878_cov_3.451907:1-1878 [pilon] Processing NODE_4539_length_658_cov_1.743017:1-658 [pilon] NODE_1660_length_1197_cov_2.183086:1-1197 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 814 of 1197 bases (68.00%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1660_length_1197_cov_2.183086:1-1197 [pilon] Processing NODE_8711_length_381_cov_47.146154:1-381 [pilon] NODE_952_length_1527_cov_13.939545:1-1527 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 460, Coverage: 39, minDepth: 10 [pilon] Confirmed 1274 of 1527 bases (83.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_952_length_1527_cov_13.939545:1-1527 [pilon] Processing NODE_2277_length_1015_cov_34.492170:1-1015 [pilon] NODE_14066_length_243_cov_13.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14066_length_243_cov_13.704918:1-243 [pilon] NODE_14246_length_243_cov_12.270492:1-243 log: [pilon] Processing NODE_1987_length_1090_cov_23.134159:1-1090 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14246_length_243_cov_12.270492:1-243 [pilon] Processing NODE_1608_length_1213_cov_28.161172:1-1213 [pilon] NODE_11348_length_270_cov_15.442953:1-270 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 54, Coverage: 6, minDepth: 5 [pilon] Confirmed 174 of 270 bases (64.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11348_length_270_cov_15.442953:1-270 [pilon] Processing NODE_8040_length_416_cov_17.569492:1-416 [pilon] NODE_2186_length_1037_cov_32.878821:1-1037 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 695, Coverage: 71, minDepth: 18 [pilon] Confirmed 945 of 1037 bases (91.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2186_length_1037_cov_32.878821:1-1037 [pilon] Processing NODE_4693_length_644_cov_1.957935:1-644 [pilon] NODE_8152_length_411_cov_7.979310:1-411 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 66, Coverage: 5, minDepth: 5 [pilon] Confirmed 221 of 411 bases (53.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8152_length_411_cov_7.979310:1-411 [pilon] Processing NODE_1669_length_1193_cov_2.937500:1-1193 [pilon] NODE_1107_length_1437_cov_20.102584:1-1437 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 675, Coverage: 38, minDepth: 10 [pilon] Confirmed 1241 of 1437 bases (86.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1107_length_1437_cov_20.102584:1-1437 [pilon] Processing NODE_8827_length_375_cov_26.000000:1-375 [pilon] NODE_4357_length_675_cov_7.996390:1-675 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 108, Coverage: 13, minDepth: 5 [pilon] Confirmed 343 of 675 bases (50.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4357_length_675_cov_7.996390:1-675 [pilon] Processing NODE_7727_length_431_cov_21.093548:1-431 [pilon] NODE_1825_length_1137_cov_3.534449:1-1137 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 99, Coverage: 11, minDepth: 5 [pilon] Confirmed 830 of 1137 bases (73.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1825_length_1137_cov_3.534449:1-1137 [pilon] Processing NODE_7965_length_420_cov_3.143813:1-420 [pilon] NODE_10212_length_316_cov_28.364103:1-316 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 111, Coverage: 14, minDepth: 5 [pilon] Confirmed 257 of 316 bases (81.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10212_length_316_cov_28.364103:1-316 [pilon] Processing NODE_9386_length_351_cov_13.313043:1-351 [pilon] NODE_3012_length_871_cov_3.838667:1-871 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 82, Coverage: 12, minDepth: 5 [pilon] Confirmed 734 of 871 bases (84.27%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7200_length_460_cov_1.292035:1-460 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 22, Coverage: 6, minDepth: 5 [pilon] Confirmed 331 of 460 bases (71.96%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7200_length_460_cov_1.292035:1-460 [pilon] Finished processing NODE_3012_length_871_cov_3.838667:1-871 [pilon] Processing NODE_4721_length_641_cov_32.642308:1-641 [pilon] Processing NODE_1412_length_1295_cov_1.769165:1-1295 [pilon] NODE_2755_length_917_cov_19.400754:1-917 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 368, Coverage: 52, minDepth: 13 [pilon] Confirmed 695 of 917 bases (75.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2755_length_917_cov_19.400754:1-917 [pilon] Processing NODE_9039_length_364_cov_24.127572:1-364 [pilon] NODE_715_length_1691_cov_15.928025:1-1691 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 616, Coverage: 40, minDepth: 10 [pilon] Confirmed 1481 of 1691 bases (87.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_715_length_1691_cov_15.928025:1-1691 [pilon] Processing NODE_8803_length_377_cov_16.066406:1-377 [pilon] NODE_1380_length_1304_cov_27.859679:1-1304 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 810, Coverage: 68, minDepth: 17 [pilon] Confirmed 1041 of 1304 bases (79.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1380_length_1304_cov_27.859679:1-1304 [pilon] Processing NODE_8567_length_390_cov_12.472119:1-390 [pilon] NODE_2716_length_926_cov_7.763975:1-926 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 137, Coverage: 13, minDepth: 5 [pilon] Confirmed 588 of 926 bases (63.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2716_length_926_cov_7.763975:1-926 [pilon] Processing NODE_9770_length_336_cov_9.795349:1-336 [pilon] NODE_13880_length_243_cov_15.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13880_length_243_cov_15.032787:1-243 [pilon] Processing NODE_13996_length_243_cov_14.213115:1-243 [pilon] NODE_4247_length_688_cov_10.774250:1-688 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 154, Coverage: 17, minDepth: 5 [pilon] Confirmed 626 of 688 bases (90.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4247_length_688_cov_10.774250:1-688 [pilon] Processing NODE_10685_length_298_cov_33.836158:1-298 [pilon] NODE_4539_length_658_cov_1.743017:1-658 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 34, Coverage: 6, minDepth: 5 [pilon] Confirmed 367 of 658 bases (55.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4539_length_658_cov_1.743017:1-658 [pilon] Processing NODE_1858_length_1126_cov_18.808955:1-1126 [pilon] NODE_1869_length_1122_cov_2.328671:1-1122 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 601 of 1122 bases (53.57%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1869_length_1122_cov_2.328671:1-1122 [pilon] Processing NODE_15142_length_196_cov_5.040000:1-196 [pilon] NODE_4693_length_644_cov_1.957935:1-644 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 42, Coverage: 8, minDepth: 5 [pilon] Confirmed 348 of 644 bases (54.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4693_length_644_cov_1.957935:1-644 [pilon] Processing NODE_7064_length_467_cov_19.921965:1-467 [pilon] NODE_1074_length_1454_cov_35.200300:1-1454 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 1115, Coverage: 73, minDepth: 18 [pilon] Confirmed 1117 of 1454 bases (76.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1074_length_1454_cov_35.200300:1-1454 [pilon] Processing NODE_11624_length_258_cov_26.547445:1-258 [pilon] NODE_14832_length_243_cov_7.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14832_length_243_cov_7.393443:1-243 [pilon] Processing NODE_10260_length_315_cov_9.113402:1-315 [pilon] NODE_5334_length_590_cov_14.938166:1-590 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 176, Coverage: 16, minDepth: 5 [pilon] Confirmed 515 of 590 bases (87.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5334_length_590_cov_14.938166:1-590 [pilon] Processing NODE_15136_length_198_cov_18.688312:1-198 [pilon] NODE_6825_length_481_cov_46.300000:1-481 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 361, Coverage: 65, minDepth: 16 [pilon] Confirmed 414 of 481 bases (86.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6825_length_481_cov_46.300000:1-481 [pilon] Processing NODE_8492_length_394_cov_23.194139:1-394 [pilon] NODE_1412_length_1295_cov_1.769165:1-1295 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 65, Coverage: 6, minDepth: 5 [pilon] Confirmed 897 of 1295 bases (69.27%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1412_length_1295_cov_1.769165:1-1295 [pilon] Processing NODE_5617_length_569_cov_15.395089:1-569 [pilon] NODE_5291_length_593_cov_22.718220:1-593 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 281, Coverage: 36, minDepth: 9 [pilon] Confirmed 498 of 593 bases (83.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5291_length_593_cov_22.718220:1-593 [pilon] Processing NODE_816_length_1618_cov_16.150301:1-1618 [pilon] NODE_10011_length_324_cov_31.369458:1-324 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 133, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 324 bases (40.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10011_length_324_cov_31.369458:1-324 [pilon] Processing NODE_9380_length_351_cov_16.482609:1-351 [pilon] NODE_8711_length_381_cov_47.146154:1-381 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 269, Coverage: 56, minDepth: 14 [pilon] Confirmed 334 of 381 bases (87.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8711_length_381_cov_47.146154:1-381 [pilon] Processing NODE_3801_length_740_cov_36.229402:1-740 [pilon] NODE_5467_length_579_cov_47.262009:1-579 log: [pilon] frags shovill.bam: coverage 83 [pilon] Total Reads: 483, Coverage: 83, minDepth: 21 [pilon] Confirmed 484 of 579 bases (83.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5467_length_579_cov_47.262009:1-579 [pilon] Processing NODE_14594_length_243_cov_9.442623:1-243 [pilon] NODE_8040_length_416_cov_17.569492:1-416 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 134, Coverage: 12, minDepth: 5 [pilon] Confirmed 382 of 416 bases (91.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8040_length_416_cov_17.569492:1-416 [pilon] Processing NODE_621_length_1781_cov_24.528313:1-1781 [pilon] NODE_2277_length_1015_cov_34.492170:1-1015 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 759, Coverage: 60, minDepth: 15 [pilon] Confirmed 799 of 1015 bases (78.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2277_length_1015_cov_34.492170:1-1015 [pilon] Processing NODE_12178_length_243_cov_37.557377:1-243 [pilon] NODE_1669_length_1193_cov_2.937500:1-1193 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 91, Coverage: 10, minDepth: 5 [pilon] Confirmed 764 of 1193 bases (64.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1669_length_1193_cov_2.937500:1-1193 [pilon] Processing NODE_6024_length_539_cov_1.688995:1-539 [pilon] NODE_1987_length_1090_cov_23.134159:1-1090 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 620, Coverage: 40, minDepth: 10 [pilon] Confirmed 813 of 1090 bases (74.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1987_length_1090_cov_23.134159:1-1090 [pilon] Processing NODE_2012_length_1083_cov_32.136175:1-1083 [pilon] NODE_7965_length_420_cov_3.143813:1-420 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 290 of 420 bases (69.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7965_length_420_cov_3.143813:1-420 [pilon] Processing NODE_1128_length_1426_cov_2.162452:1-1426 [pilon] NODE_8827_length_375_cov_26.000000:1-375 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 146, Coverage: 17, minDepth: 5 [pilon] Confirmed 292 of 375 bases (77.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8827_length_375_cov_26.000000:1-375 [pilon] NODE_7727_length_431_cov_21.093548:1-431 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 149, Coverage: 20, minDepth: 5 [pilon] Confirmed 348 of 431 bases (80.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_4759_length_639_cov_1.760618:1-639 [pilon] Finished processing NODE_7727_length_431_cov_21.093548:1-431 [pilon] Processing NODE_12376_length_243_cov_31.508197:1-243 [pilon] NODE_1608_length_1213_cov_28.161172:1-1213 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 817, Coverage: 43, minDepth: 11 [pilon] Confirmed 859 of 1213 bases (70.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1608_length_1213_cov_28.161172:1-1213 [pilon] Processing NODE_4265_length_685_cov_29.042553:1-685 [pilon] NODE_9386_length_351_cov_13.313043:1-351 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 71, Coverage: 6, minDepth: 5 [pilon] Confirmed 179 of 351 bases (51.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9386_length_351_cov_13.313043:1-351 [pilon] Processing NODE_12460_length_243_cov_29.754098:1-243 [pilon] NODE_9770_length_336_cov_9.795349:1-336 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 40, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 336 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9770_length_336_cov_9.795349:1-336 [pilon] Processing NODE_14361_length_243_cov_11.352459:1-243 [pilon] NODE_9039_length_364_cov_24.127572:1-364 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 129, Coverage: 18, minDepth: 5 [pilon] Confirmed 225 of 364 bases (61.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9039_length_364_cov_24.127572:1-364 [pilon] NODE_4721_length_641_cov_32.642308:1-641 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 397, Coverage: 65, minDepth: 16 [pilon] Confirmed 432 of 641 bases (67.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4721_length_641_cov_32.642308:1-641 [pilon] Processing NODE_252_length_2333_cov_27.566908:1-2333 [pilon] Processing NODE_8658_length_384_cov_21.178707:1-384 [pilon] NODE_8803_length_377_cov_16.066406:1-377 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 88, Coverage: 13, minDepth: 5 [pilon] Confirmed 287 of 377 bases (76.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8803_length_377_cov_16.066406:1-377 [pilon] Processing NODE_12501_length_243_cov_29.106557:1-243 [pilon] NODE_1858_length_1126_cov_18.808955:1-1126 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 462, Coverage: 33, minDepth: 8 [pilon] Confirmed 963 of 1126 bases (85.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1858_length_1126_cov_18.808955:1-1126 [pilon] Processing NODE_13619_length_243_cov_17.311475:1-243 [pilon] NODE_7064_length_467_cov_19.921965:1-467 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 164, Coverage: 14, minDepth: 5 [pilon] Confirmed 428 of 467 bases (91.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7064_length_467_cov_19.921965:1-467 [pilon] Processing NODE_14429_length_243_cov_10.827869:1-243 [pilon] NODE_8567_length_390_cov_12.472119:1-390 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 83, Coverage: 11, minDepth: 5 [pilon] Confirmed 249 of 390 bases (63.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8567_length_390_cov_12.472119:1-390 [pilon] Processing NODE_9507_length_345_cov_22.629464:1-345 [pilon] NODE_13996_length_243_cov_14.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13996_length_243_cov_14.213115:1-243 [pilon] Processing NODE_2708_length_927_cov_39.299007:1-927 [pilon] NODE_10685_length_298_cov_33.836158:1-298 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 138, Coverage: 20, minDepth: 5 [pilon] Confirmed 255 of 298 bases (85.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10685_length_298_cov_33.836158:1-298 [pilon] Processing NODE_13654_length_243_cov_16.967213:1-243 [pilon] NODE_5617_length_569_cov_15.395089:1-569 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 159, Coverage: 24, minDepth: 6 [pilon] Confirmed 404 of 569 bases (71.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5617_length_569_cov_15.395089:1-569 [pilon] Processing NODE_3701_length_754_cov_16.718799:1-754 [pilon] NODE_15142_length_196_cov_5.040000:1-196 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 196 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15142_length_196_cov_5.040000:1-196 [pilon] Processing NODE_11419_length_267_cov_11.431507:1-267 [pilon] NODE_11624_length_258_cov_26.547445:1-258 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 83, Coverage: 4, minDepth: 5 [pilon] Confirmed 125 of 258 bases (48.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11624_length_258_cov_26.547445:1-258 [pilon] Processing NODE_8842_length_375_cov_13.055118:1-375 [pilon] NODE_14361_length_243_cov_11.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14361_length_243_cov_11.352459:1-243 [pilon] Processing NODE_9690_length_339_cov_8.366972:1-339 [pilon] NODE_10260_length_315_cov_9.113402:1-315 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10260_length_315_cov_9.113402:1-315 [pilon] Processing NODE_1267_length_1355_cov_47.867909:1-1355 [pilon] NODE_15136_length_198_cov_18.688312:1-198 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 198 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15136_length_198_cov_18.688312:1-198 [pilon] Processing NODE_6176_length_526_cov_9.261728:1-526 [pilon] NODE_8492_length_394_cov_23.194139:1-394 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 161, Coverage: 8, minDepth: 5 [pilon] Confirmed 168 of 394 bases (42.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8492_length_394_cov_23.194139:1-394 [pilon] Processing NODE_3294_length_815_cov_31.688761:1-815 [pilon] NODE_9380_length_351_cov_16.482609:1-351 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 80, Coverage: 10, minDepth: 5 [pilon] Confirmed 247 of 351 bases (70.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9380_length_351_cov_16.482609:1-351 [pilon] Processing NODE_4113_length_704_cov_2.802744:1-704 [pilon] NODE_14594_length_243_cov_9.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14594_length_243_cov_9.442623:1-243 [pilon] Processing NODE_5442_length_581_cov_9.669565:1-581 [pilon] NODE_3801_length_740_cov_36.229402:1-740 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 514, Coverage: 72, minDepth: 18 [pilon] Confirmed 659 of 740 bases (89.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3801_length_740_cov_36.229402:1-740 [pilon] Processing NODE_11360_length_270_cov_7.624161:1-270 [pilon] NODE_12178_length_243_cov_37.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12178_length_243_cov_37.557377:1-243 [pilon] Processing NODE_8839_length_375_cov_15.192913:1-375 [pilon] NODE_6024_length_539_cov_1.688995:1-539 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 28, Coverage: 7, minDepth: 5 [pilon] Confirmed 353 of 539 bases (65.49%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6024_length_539_cov_1.688995:1-539 [pilon] Processing NODE_2298_length_1011_cov_24.239326:1-1011 [pilon] NODE_816_length_1618_cov_16.150301:1-1618 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 542, Coverage: 43, minDepth: 11 [pilon] Confirmed 1179 of 1618 bases (72.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_816_length_1618_cov_16.150301:1-1618 [pilon] NODE_1128_length_1426_cov_2.162452:1-1426 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 88, Coverage: 8, minDepth: 5 [pilon] Confirmed 922 of 1426 bases (64.66%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1128_length_1426_cov_2.162452:1-1426 [pilon] Processing NODE_5940_length_545_cov_14.535377:1-545 [pilon] Processing NODE_4467_length_664_cov_21.865562:1-664 [pilon] NODE_12376_length_243_cov_31.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 93, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12376_length_243_cov_31.508197:1-243 [pilon] Processing NODE_8235_length_407_cov_6.276224:1-407 [pilon] NODE_2012_length_1083_cov_32.136175:1-1083 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 716, Coverage: 70, minDepth: 18 [pilon] Confirmed 965 of 1083 bases (89.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2012_length_1083_cov_32.136175:1-1083 [pilon] Processing NODE_8762_length_379_cov_13.147287:1-379 [pilon] NODE_4265_length_685_cov_29.042553:1-685 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 402, Coverage: 35, minDepth: 9 [pilon] Confirmed 451 of 685 bases (65.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4265_length_685_cov_29.042553:1-685 [pilon] Processing NODE_10997_length_285_cov_6.384146:1-285 [pilon] NODE_14429_length_243_cov_10.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14429_length_243_cov_10.827869:1-243 [pilon] Processing NODE_13520_length_243_cov_18.155738:1-243 [pilon] NODE_4759_length_639_cov_1.760618:1-639 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 370 of 639 bases (57.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4759_length_639_cov_1.760618:1-639 [pilon] Processing NODE_5292_length_593_cov_12.572034:1-593 [pilon] NODE_621_length_1781_cov_24.528313:1-1781 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 1024, Coverage: 43, minDepth: 11 [pilon] Confirmed 1603 of 1781 bases (90.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_621_length_1781_cov_24.528313:1-1781 [pilon] Processing NODE_8375_length_402_cov_0.761566:1-402 [pilon] NODE_12460_length_243_cov_29.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 86, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12460_length_243_cov_29.754098:1-243 [pilon] Processing NODE_4481_length_663_cov_16.586716:1-663 [pilon] NODE_13619_length_243_cov_17.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13619_length_243_cov_17.311475:1-243 [pilon] Processing NODE_6793_length_483_cov_28.325967:1-483 [pilon] NODE_8658_length_384_cov_21.178707:1-384 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 123, Coverage: 11, minDepth: 5 [pilon] Confirmed 252 of 384 bases (65.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8658_length_384_cov_21.178707:1-384 [pilon] Processing NODE_7984_length_419_cov_6.570470:1-419 [pilon] NODE_3701_length_754_cov_16.718799:1-754 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 260, Coverage: 27, minDepth: 7 [pilon] Confirmed 505 of 754 bases (66.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3701_length_754_cov_16.718799:1-754 [pilon] Processing NODE_8061_length_415_cov_1.493197:1-415 [pilon] NODE_9507_length_345_cov_22.629464:1-345 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 100, Coverage: 9, minDepth: 5 [pilon] Confirmed 230 of 345 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9507_length_345_cov_22.629464:1-345 [pilon] Processing NODE_3894_length_729_cov_2.453947:1-729 [pilon] NODE_252_length_2333_cov_27.566908:1-2333 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 1548, Coverage: 59, minDepth: 15 [pilon] Confirmed 2260 of 2333 bases (96.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_252_length_2333_cov_27.566908:1-2333 [pilon] Processing NODE_8291_length_405_cov_10.232394:1-405 [pilon] NODE_12501_length_243_cov_29.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12501_length_243_cov_29.106557:1-243 [pilon] Processing NODE_7911_length_422_cov_44.162791:1-422 [pilon] NODE_2708_length_927_cov_39.299007:1-927 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 716, Coverage: 81, minDepth: 20 [pilon] Confirmed 827 of 927 bases (89.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2708_length_927_cov_39.299007:1-927 [pilon] Processing NODE_1402_length_1297_cov_14.647959:1-1297 [pilon] NODE_11419_length_267_cov_11.431507:1-267 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 37, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11419_length_267_cov_11.431507:1-267 [pilon] Processing NODE_7118_length_465_cov_0.802326:1-465 [pilon] NODE_13654_length_243_cov_16.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13654_length_243_cov_16.967213:1-243 [pilon] Processing NODE_11641_length_258_cov_18.518248:1-258 [pilon] NODE_9690_length_339_cov_8.366972:1-339 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 51, Coverage: 5, minDepth: 5 [pilon] Confirmed 194 of 339 bases (57.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9690_length_339_cov_8.366972:1-339 [pilon] Processing NODE_3672_length_759_cov_2.700627:1-759 [pilon] NODE_8842_length_375_cov_13.055118:1-375 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 73, Coverage: 14, minDepth: 5 [pilon] Confirmed 276 of 375 bases (73.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8842_length_375_cov_13.055118:1-375 [pilon] Processing NODE_11596_length_261_cov_5.271429:1-261 [pilon] NODE_6176_length_526_cov_9.261728:1-526 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 76, Coverage: 14, minDepth: 5 [pilon] Confirmed 373 of 526 bases (70.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6176_length_526_cov_9.261728:1-526 [pilon] Processing NODE_1697_length_1181_cov_2.200943:1-1181 [pilon] NODE_8839_length_375_cov_15.192913:1-375 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 88, Coverage: 15, minDepth: 5 [pilon] Confirmed 270 of 375 bases (72.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8839_length_375_cov_15.192913:1-375 [pilon] Processing NODE_8277_length_405_cov_20.242958:1-405 [pilon] NODE_13520_length_243_cov_18.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13520_length_243_cov_18.155738:1-243 [pilon] Processing NODE_3322_length_811_cov_40.813043:1-811 [pilon] NODE_3294_length_815_cov_31.688761:1-815 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 629, Coverage: 50, minDepth: 13 [pilon] Confirmed 602 of 815 bases (73.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3294_length_815_cov_31.688761:1-815 [pilon] Processing NODE_2261_length_1019_cov_17.596882:1-1019 [pilon] NODE_4113_length_704_cov_2.802744:1-704 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 71, Coverage: 9, minDepth: 5 [pilon] Confirmed 656 of 704 bases (93.18%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4113_length_704_cov_2.802744:1-704 [pilon] NODE_2298_length_1011_cov_24.239326:1-1011 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 517, Coverage: 54, minDepth: 14 [pilon] Confirmed 853 of 1011 bases (84.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_4436_length_667_cov_22.589744:1-667 [pilon] Finished processing NODE_2298_length_1011_cov_24.239326:1-1011 [pilon] Processing NODE_4855_length_630_cov_16.491159:1-630 [pilon] NODE_1267_length_1355_cov_47.867909:1-1355 log: [pilon] frags shovill.bam: coverage 122 [pilon] Total Reads: 1360, Coverage: 122, minDepth: 31 [pilon] Confirmed 1061 of 1355 bases (78.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1267_length_1355_cov_47.867909:1-1355 [pilon] Processing NODE_4082_length_707_cov_22.097270:1-707 [pilon] NODE_5442_length_581_cov_9.669565:1-581 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 118, Coverage: 9, minDepth: 5 [pilon] Confirmed 340 of 581 bases (58.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5442_length_581_cov_9.669565:1-581 [pilon] Processing NODE_6380_length_512_cov_1.900256:1-512 [pilon] NODE_6793_length_483_cov_28.325967:1-483 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 239, Coverage: 32, minDepth: 8 [pilon] Confirmed 323 of 483 bases (66.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6793_length_483_cov_28.325967:1-483 [pilon] Processing NODE_7139_length_463_cov_14.122807:1-463 [pilon] NODE_11360_length_270_cov_7.624161:1-270 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 270 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11360_length_270_cov_7.624161:1-270 [pilon] Processing NODE_3744_length_749_cov_0.598726:1-749 [pilon] NODE_4467_length_664_cov_21.865562:1-664 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 268, Coverage: 23, minDepth: 6 [pilon] Confirmed 487 of 664 bases (73.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4467_length_664_cov_21.865562:1-664 [pilon] Processing NODE_584_length_1825_cov_12.698357:1-1825 [pilon] NODE_5940_length_545_cov_14.535377:1-545 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 238, Coverage: 30, minDepth: 8 [pilon] Confirmed 438 of 545 bases (80.37%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5940_length_545_cov_14.535377:1-545 [pilon] Processing NODE_13075_length_243_cov_22.188525:1-243 [pilon] NODE_10997_length_285_cov_6.384146:1-285 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10997_length_285_cov_6.384146:1-285 [pilon] Processing NODE_219_length_2434_cov_1.327281:1-2434 [pilon] NODE_8375_length_402_cov_0.761566:1-402 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 8, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 402 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8375_length_402_cov_0.761566:1-402 [pilon] Processing NODE_2396_length_991_cov_14.110345:1-991 [pilon] NODE_8235_length_407_cov_6.276224:1-407 log: [pilon] NODE_8762_length_379_cov_13.147287:1-379 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 80, Coverage: 6, minDepth: 5 [pilon] Confirmed 226 of 379 bases (59.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 60, Coverage: 3, minDepth: 5 [pilon] Confirmed 110 of 407 bases (27.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8235_length_407_cov_6.276224:1-407 [pilon] Processing NODE_5164_length_605_cov_1.902893:1-605 [pilon] Finished processing NODE_8762_length_379_cov_13.147287:1-379 [pilon] Processing NODE_12876_length_243_cov_24.245902:1-243 [pilon] NODE_4481_length_663_cov_16.586716:1-663 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 243, Coverage: 27, minDepth: 7 [pilon] Confirmed 499 of 663 bases (75.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4481_length_663_cov_16.586716:1-663 [pilon] Processing NODE_8060_length_415_cov_1.710884:1-415 [pilon] NODE_5292_length_593_cov_12.572034:1-593 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 154, Coverage: 8, minDepth: 5 [pilon] Confirmed 404 of 593 bases (68.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5292_length_593_cov_12.572034:1-593 [pilon] Processing NODE_7590_length_438_cov_19.539432:1-438 [pilon] NODE_7118_length_465_cov_0.802326:1-465 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 11, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 465 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7118_length_465_cov_0.802326:1-465 [pilon] Processing NODE_14913_length_243_cov_6.557377:1-243 [pilon] NODE_7984_length_419_cov_6.570470:1-419 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 56, Coverage: 6, minDepth: 5 [pilon] Confirmed 273 of 419 bases (65.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7984_length_419_cov_6.570470:1-419 [pilon] Processing NODE_6971_length_473_cov_33.696023:1-473 [pilon] NODE_3894_length_729_cov_2.453947:1-729 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 36, Coverage: 6, minDepth: 5 [pilon] Confirmed 500 of 729 bases (68.59%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3894_length_729_cov_2.453947:1-729 [pilon] Processing NODE_2663_length_935_cov_2.651106:1-935 [pilon] NODE_7911_length_422_cov_44.162791:1-422 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 296, Coverage: 50, minDepth: 13 [pilon] Confirmed 355 of 422 bases (84.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7911_length_422_cov_44.162791:1-422 [pilon] Processing NODE_13865_length_243_cov_15.155738:1-243 [pilon] NODE_8061_length_415_cov_1.493197:1-415 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 22 of 415 bases (5.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8061_length_415_cov_1.493197:1-415 [pilon] Processing NODE_12072_length_244_cov_36.569106:1-244 [pilon] NODE_8291_length_405_cov_10.232394:1-405 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 56, Coverage: 3, minDepth: 5 [pilon] Confirmed 104 of 405 bases (25.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8291_length_405_cov_10.232394:1-405 [pilon] Processing NODE_4558_length_657_cov_1.679104:1-657 [pilon] NODE_8277_length_405_cov_20.242958:1-405 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 130, Coverage: 14, minDepth: 5 [pilon] Confirmed 252 of 405 bases (62.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8277_length_405_cov_20.242958:1-405 [pilon] Processing NODE_1508_length_1254_cov_28.132392:1-1254 [pilon] NODE_3322_length_811_cov_40.813043:1-811 log: [pilon] frags shovill.bam: coverage 87 [pilon] Total Reads: 608, Coverage: 87, minDepth: 22 [pilon] Confirmed 618 of 811 bases (76.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3322_length_811_cov_40.813043:1-811 [pilon] Processing NODE_648_length_1749_cov_31.025799:1-1749 [pilon] NODE_1402_length_1297_cov_14.647959:1-1297 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 398, Coverage: 32, minDepth: 8 [pilon] Confirmed 996 of 1297 bases (76.79%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1402_length_1297_cov_14.647959:1-1297 [pilon] Processing NODE_13170_length_243_cov_21.368852:1-243 [pilon] NODE_11641_length_258_cov_18.518248:1-258 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 57, Coverage: 4, minDepth: 5 [pilon] Confirmed 129 of 258 bases (50.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11641_length_258_cov_18.518248:1-258 [pilon] Processing NODE_9111_length_361_cov_5.562500:1-361 [pilon] NODE_4855_length_630_cov_16.491159:1-630 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 206, Coverage: 34, minDepth: 9 [pilon] Confirmed 504 of 630 bases (80.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4855_length_630_cov_16.491159:1-630 [pilon] Processing NODE_6466_length_506_cov_3.194805:1-506 [pilon] NODE_11596_length_261_cov_5.271429:1-261 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 20, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11596_length_261_cov_5.271429:1-261 [pilon] Processing NODE_8392_length_400_cov_12.670251:1-400 [pilon] NODE_3672_length_759_cov_2.700627:1-759 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 71, Coverage: 9, minDepth: 5 [pilon] Confirmed 730 of 759 bases (96.18%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3672_length_759_cov_2.700627:1-759 [pilon] Processing NODE_13454_length_243_cov_18.795082:1-243 [pilon] NODE_1697_length_1181_cov_2.200943:1-1181 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 66, Coverage: 7, minDepth: 5 [pilon] Confirmed 731 of 1181 bases (61.90%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1697_length_1181_cov_2.200943:1-1181 [pilon] Processing NODE_6059_length_535_cov_10.072464:1-535 [pilon] NODE_4436_length_667_cov_22.589744:1-667 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 277, Coverage: 29, minDepth: 7 [pilon] Confirmed 539 of 667 bases (80.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4436_length_667_cov_22.589744:1-667 [pilon] Processing NODE_1226_length_1378_cov_4.041368:1-1378 [pilon] NODE_2261_length_1019_cov_17.596882:1-1019 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 379, Coverage: 33, minDepth: 8 [pilon] Confirmed 926 of 1019 bases (90.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2261_length_1019_cov_17.596882:1-1019 [pilon] Processing NODE_6727_length_489_cov_1.114130:1-489 [pilon] NODE_3744_length_749_cov_0.598726:1-749 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 7 of 749 bases (0.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3744_length_749_cov_0.598726:1-749 [pilon] Processing NODE_4581_length_655_cov_3.898876:1-655 [pilon] NODE_6380_length_512_cov_1.900256:1-512 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 244 of 512 bases (47.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6380_length_512_cov_1.900256:1-512 [pilon] Processing NODE_14732_length_243_cov_8.303279:1-243 [pilon] NODE_4082_length_707_cov_22.097270:1-707 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 310, Coverage: 37, minDepth: 9 [pilon] Confirmed 589 of 707 bases (83.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4082_length_707_cov_22.097270:1-707 [pilon] Processing NODE_8523_length_393_cov_8.588235:1-393 [pilon] NODE_7139_length_463_cov_14.122807:1-463 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 114, Coverage: 15, minDepth: 5 [pilon] Confirmed 269 of 463 bases (58.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7139_length_463_cov_14.122807:1-463 [pilon] Processing NODE_4519_length_660_cov_1.994434:1-660 [pilon] NODE_2396_length_991_cov_14.110345:1-991 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 277, Coverage: 26, minDepth: 7 [pilon] Confirmed 813 of 991 bases (82.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2396_length_991_cov_14.110345:1-991 [pilon] Processing NODE_2618_length_942_cov_23.842875:1-942 [pilon] NODE_584_length_1825_cov_12.698357:1-1825 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 528, Coverage: 33, minDepth: 8 [pilon] Confirmed 1527 of 1825 bases (83.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_584_length_1825_cov_12.698357:1-1825 [pilon] Processing NODE_9812_length_333_cov_26.773585:1-333 [pilon] NODE_13075_length_243_cov_22.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13075_length_243_cov_22.188525:1-243 [pilon] Processing NODE_6680_length_492_cov_13.078167:1-492 [pilon] NODE_5164_length_605_cov_1.902893:1-605 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 428 of 605 bases (70.74%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5164_length_605_cov_1.902893:1-605 [pilon] Processing NODE_11961_length_246_cov_37.576000:1-246 [pilon] NODE_8060_length_415_cov_1.710884:1-415 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 19, Coverage: 4, minDepth: 5 [pilon] Confirmed 212 of 415 bases (51.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8060_length_415_cov_1.710884:1-415 [pilon] Processing NODE_3211_length_831_cov_19.821127:1-831 [pilon] NODE_12876_length_243_cov_24.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12876_length_243_cov_24.245902:1-243 [pilon] Processing NODE_7012_length_471_cov_0.608571:1-471 [pilon] NODE_7590_length_438_cov_19.539432:1-438 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 139, Coverage: 21, minDepth: 5 [pilon] Confirmed 276 of 438 bases (63.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7590_length_438_cov_19.539432:1-438 [pilon] Processing NODE_12830_length_243_cov_24.770492:1-243 [pilon] NODE_14913_length_243_cov_6.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14913_length_243_cov_6.557377:1-243 [pilon] Processing NODE_4512_length_660_cov_34.660482:1-660 [pilon] NODE_2663_length_935_cov_2.651106:1-935 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 55, Coverage: 7, minDepth: 5 [pilon] Confirmed 530 of 935 bases (56.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2663_length_935_cov_2.651106:1-935 [pilon] Processing NODE_3177_length_835_cov_17.053221:1-835 [pilon] NODE_4558_length_657_cov_1.679104:1-657 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 36, Coverage: 5, minDepth: 5 [pilon] Confirmed 346 of 657 bases (52.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4558_length_657_cov_1.679104:1-657 [pilon] Processing NODE_1440_length_1285_cov_14.573024:1-1285 [pilon] NODE_219_length_2434_cov_1.327281:1-2434 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 104, Coverage: 6, minDepth: 5 [pilon] Confirmed 1105 of 2434 bases (45.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_219_length_2434_cov_1.327281:1-2434 [pilon] Processing NODE_3601_length_768_cov_13.211747:1-768 [pilon] NODE_12072_length_244_cov_36.569106:1-244 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 98, Coverage: 5, minDepth: 5 [pilon] Confirmed 129 of 244 bases (52.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12072_length_244_cov_36.569106:1-244 [pilon] Processing NODE_6077_length_534_cov_3.968523:1-534 [pilon] NODE_1508_length_1254_cov_28.132392:1-1254 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 735, Coverage: 66, minDepth: 17 [pilon] Confirmed 971 of 1254 bases (77.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1508_length_1254_cov_28.132392:1-1254 [pilon] Processing NODE_10672_length_299_cov_17.078652:1-299 [pilon] NODE_13865_length_243_cov_15.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13865_length_243_cov_15.155738:1-243 [pilon] Processing NODE_13904_length_243_cov_14.860656:1-243 [pilon] NODE_6971_length_473_cov_33.696023:1-473 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 272, Coverage: 30, minDepth: 8 [pilon] Confirmed 384 of 473 bases (81.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6971_length_473_cov_33.696023:1-473 [pilon] Processing NODE_6237_length_522_cov_8.765586:1-522 [pilon] NODE_6466_length_506_cov_3.194805:1-506 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 44, Coverage: 10, minDepth: 5 [pilon] Confirmed 432 of 506 bases (85.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6466_length_506_cov_3.194805:1-506 [pilon] Processing NODE_8440_length_397_cov_23.184783:1-397 [pilon] NODE_648_length_1749_cov_31.025799:1-1749 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 1220, Coverage: 77, minDepth: 19 [pilon] Confirmed 1566 of 1749 bases (89.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_648_length_1749_cov_31.025799:1-1749 [pilon] Processing NODE_7095_length_465_cov_19.357558:1-465 [pilon] NODE_4581_length_655_cov_3.898876:1-655 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 52, Coverage: 10, minDepth: 5 [pilon] Confirmed 469 of 655 bases (71.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4581_length_655_cov_3.898876:1-655 [pilon] Processing NODE_2181_length_1039_cov_1.335512:1-1039 [pilon] NODE_8392_length_400_cov_12.670251:1-400 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 113, Coverage: 12, minDepth: 5 [pilon] Confirmed 339 of 400 bases (84.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8392_length_400_cov_12.670251:1-400 [pilon] Processing NODE_2922_length_888_cov_27.054759:1-888 [pilon] NODE_1226_length_1378_cov_4.041368:1-1378 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 124, Coverage: 11, minDepth: 5 [pilon] Confirmed 1184 of 1378 bases (85.92%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1226_length_1378_cov_4.041368:1-1378 [pilon] Processing NODE_13752_length_243_cov_16.016393:1-243 [pilon] NODE_6727_length_489_cov_1.114130:1-489 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 156 of 489 bases (31.90%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6727_length_489_cov_1.114130:1-489 [pilon] Processing NODE_12207_length_243_cov_36.467213:1-243 [pilon] NODE_9812_length_333_cov_26.773585:1-333 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 118, Coverage: 15, minDepth: 5 [pilon] Confirmed 236 of 333 bases (70.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9812_length_333_cov_26.773585:1-333 [pilon] Processing NODE_14204_length_243_cov_12.581967:1-243 [pilon] NODE_13170_length_243_cov_21.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13170_length_243_cov_21.368852:1-243 [pilon] Processing NODE_14708_length_243_cov_8.500000:1-243 [pilon] NODE_3601_length_768_cov_13.211747:1-768 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 192, Coverage: 20, minDepth: 5 [pilon] Confirmed 523 of 768 bases (68.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3601_length_768_cov_13.211747:1-768 [pilon] Processing NODE_1693_length_1184_cov_22.500470:1-1184 [pilon] NODE_6059_length_535_cov_10.072464:1-535 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 134, Coverage: 12, minDepth: 5 [pilon] Confirmed 288 of 535 bases (53.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6059_length_535_cov_10.072464:1-535 [pilon] Processing NODE_5854_length_551_cov_11.223256:1-551 [pilon] NODE_13454_length_243_cov_18.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13454_length_243_cov_18.795082:1-243 [pilon] Processing NODE_14227_length_243_cov_12.368852:1-243 [pilon] NODE_11961_length_246_cov_37.576000:1-246 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 97, Coverage: 8, minDepth: 5 [pilon] Confirmed 162 of 246 bases (65.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11961_length_246_cov_37.576000:1-246 [pilon] Processing NODE_9867_length_331_cov_12.138095:1-331 [pilon] NODE_7012_length_471_cov_0.608571:1-471 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 471 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7012_length_471_cov_0.608571:1-471 [pilon] Processing NODE_9054_length_363_cov_28.942149:1-363 [pilon] NODE_8523_length_393_cov_8.588235:1-393 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 50, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 393 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8523_length_393_cov_8.588235:1-393 [pilon] Processing NODE_3292_length_816_cov_17.519424:1-816 [pilon] NODE_9111_length_361_cov_5.562500:1-361 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 34, Coverage: 5, minDepth: 5 [pilon] Confirmed 145 of 361 bases (40.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9111_length_361_cov_5.562500:1-361 [pilon] Processing NODE_8522_length_393_cov_12.066176:1-393 [pilon] NODE_2618_length_942_cov_23.842875:1-942 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 446, Coverage: 46, minDepth: 12 [pilon] Confirmed 772 of 942 bases (81.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2618_length_942_cov_23.842875:1-942 [pilon] Processing NODE_4594_length_654_cov_6.510319:1-654 [pilon] NODE_14732_length_243_cov_8.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14732_length_243_cov_8.303279:1-243 [pilon] Processing NODE_11143_length_278_cov_23.675159:1-278 [pilon] NODE_1440_length_1285_cov_14.573024:1-1285 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 513, Coverage: 26, minDepth: 7 [pilon] Confirmed 1077 of 1285 bases (83.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1440_length_1285_cov_14.573024:1-1285 [pilon] Processing NODE_10708_length_297_cov_21.977273:1-297 [pilon] NODE_3211_length_831_cov_19.821127:1-831 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 358, Coverage: 28, minDepth: 7 [pilon] Confirmed 689 of 831 bases (82.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3211_length_831_cov_19.821127:1-831 [pilon] Processing NODE_1802_length_1146_cov_18.736585:1-1146 [pilon] NODE_4519_length_660_cov_1.994434:1-660 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 409 of 660 bases (61.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4519_length_660_cov_1.994434:1-660 [pilon] Processing NODE_5967_length_543_cov_27.864929:1-543 [pilon] NODE_4512_length_660_cov_34.660482:1-660 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 429, Coverage: 63, minDepth: 16 [pilon] Confirmed 582 of 660 bases (88.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4512_length_660_cov_34.660482:1-660 [pilon] Processing NODE_13155_length_243_cov_21.483607:1-243 [pilon] NODE_6680_length_492_cov_13.078167:1-492 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 123, Coverage: 8, minDepth: 5 [pilon] Confirmed 277 of 492 bases (56.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6680_length_492_cov_13.078167:1-492 [pilon] Processing NODE_5492_length_578_cov_15.207877:1-578 [pilon] NODE_13904_length_243_cov_14.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13904_length_243_cov_14.860656:1-243 [pilon] Processing NODE_4441_length_667_cov_2.293040:1-667 [pilon] NODE_6237_length_522_cov_8.765586:1-522 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 89, Coverage: 10, minDepth: 5 [pilon] Confirmed 267 of 522 bases (51.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6237_length_522_cov_8.765586:1-522 [pilon] Processing NODE_6088_length_533_cov_1.720874:1-533 [pilon] NODE_12830_length_243_cov_24.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12830_length_243_cov_24.770492:1-243 [pilon] Processing NODE_9776_length_336_cov_0.944186:1-336 [pilon] NODE_3177_length_835_cov_17.053221:1-835 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 295, Coverage: 45, minDepth: 11 [pilon] Confirmed 518 of 835 bases (62.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3177_length_835_cov_17.053221:1-835 [pilon] Processing NODE_13437_length_243_cov_18.959016:1-243 [pilon] NODE_8440_length_397_cov_23.184783:1-397 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 142, Coverage: 13, minDepth: 5 [pilon] Confirmed 257 of 397 bases (64.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8440_length_397_cov_23.184783:1-397 [pilon] Processing NODE_9684_length_339_cov_10.899083:1-339 [pilon] NODE_6077_length_534_cov_3.968523:1-534 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 43, Coverage: 9, minDepth: 5 [pilon] Confirmed 421 of 534 bases (78.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6077_length_534_cov_3.968523:1-534 [pilon] Processing NODE_5024_length_617_cov_4.375000:1-617 [pilon] NODE_7095_length_465_cov_19.357558:1-465 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 161, Coverage: 4, minDepth: 5 [pilon] Confirmed 238 of 465 bases (51.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7095_length_465_cov_19.357558:1-465 [pilon] Processing NODE_4600_length_653_cov_2.960526:1-653 [pilon] NODE_4594_length_654_cov_6.510319:1-654 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 88, Coverage: 8, minDepth: 5 [pilon] Confirmed 441 of 654 bases (67.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4594_length_654_cov_6.510319:1-654 [pilon] Processing NODE_14872_length_243_cov_6.967213:1-243 [pilon] NODE_3292_length_816_cov_17.519424:1-816 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 286, Coverage: 33, minDepth: 8 [pilon] Confirmed 583 of 816 bases (71.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3292_length_816_cov_17.519424:1-816 [pilon] Processing NODE_1307_length_1337_cov_14.006579:1-1337 [pilon] NODE_10672_length_299_cov_17.078652:1-299 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 76, Coverage: 6, minDepth: 5 [pilon] Confirmed 238 of 299 bases (79.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10672_length_299_cov_17.078652:1-299 [pilon] Processing NODE_13091_length_243_cov_22.040984:1-243 [pilon] NODE_1693_length_1184_cov_22.500470:1-1184 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 595, Coverage: 58, minDepth: 15 [pilon] Confirmed 1027 of 1184 bases (86.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1693_length_1184_cov_22.500470:1-1184 [pilon] Processing NODE_533_length_1877_cov_19.484624:1-1877 [pilon] NODE_9054_length_363_cov_28.942149:1-363 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 151, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 363 bases (34.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9054_length_363_cov_28.942149:1-363 [pilon] Processing NODE_14712_length_243_cov_8.483607:1-243 [pilon] NODE_2181_length_1039_cov_1.335512:1-1039 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 33, Coverage: 4, minDepth: 5 [pilon] Confirmed 353 of 1039 bases (33.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2181_length_1039_cov_1.335512:1-1039 [pilon] Processing NODE_13151_length_243_cov_21.508197:1-243 [pilon] NODE_14708_length_243_cov_8.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14708_length_243_cov_8.500000:1-243 [pilon] Processing NODE_4586_length_654_cov_28.266417:1-654 [pilon] NODE_13155_length_243_cov_21.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13155_length_243_cov_21.483607:1-243 [pilon] Processing NODE_932_length_1539_cov_41.311707:1-1539 [pilon] NODE_5854_length_551_cov_11.223256:1-551 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 115, Coverage: 15, minDepth: 5 [pilon] Confirmed 425 of 551 bases (77.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5854_length_551_cov_11.223256:1-551 [pilon] Processing NODE_2803_length_909_cov_0.884518:1-909 [pilon] NODE_13752_length_243_cov_16.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13752_length_243_cov_16.016393:1-243 [pilon] Processing NODE_12357_length_243_cov_31.909836:1-243 [pilon] NODE_8522_length_393_cov_12.066176:1-393 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 76, Coverage: 8, minDepth: 5 [pilon] Confirmed 214 of 393 bases (54.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8522_length_393_cov_12.066176:1-393 [pilon] Processing NODE_4763_length_638_cov_25.232108:1-638 [pilon] NODE_11143_length_278_cov_23.675159:1-278 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 71, Coverage: 6, minDepth: 5 [pilon] Confirmed 169 of 278 bases (60.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11143_length_278_cov_23.675159:1-278 [pilon] Processing NODE_4655_length_648_cov_1.521822:1-648 [pilon] NODE_14227_length_243_cov_12.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14227_length_243_cov_12.368852:1-243 [pilon] Processing NODE_12959_length_243_cov_23.368852:1-243 [pilon] NODE_14204_length_243_cov_12.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14204_length_243_cov_12.581967:1-243 [pilon] Processing NODE_6091_length_533_cov_1.016990:1-533 [pilon] NODE_10708_length_297_cov_21.977273:1-297 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 86, Coverage: 12, minDepth: 5 [pilon] Confirmed 240 of 297 bases (80.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10708_length_297_cov_21.977273:1-297 [pilon] Processing NODE_489_length_1919_cov_2.720245:1-1919 [pilon] NODE_1802_length_1146_cov_18.736585:1-1146 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 460, Coverage: 43, minDepth: 11 [pilon] Confirmed 853 of 1146 bases (74.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1802_length_1146_cov_18.736585:1-1146 [pilon] Processing NODE_3193_length_834_cov_0.516129:1-834 [pilon] NODE_2922_length_888_cov_27.054759:1-888 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 559, Coverage: 43, minDepth: 11 [pilon] Confirmed 751 of 888 bases (84.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2922_length_888_cov_27.054759:1-888 [pilon] Processing NODE_9968_length_327_cov_17.271845:1-327 [pilon] NODE_5492_length_578_cov_15.207877:1-578 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 160, Coverage: 20, minDepth: 5 [pilon] Confirmed 497 of 578 bases (85.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5492_length_578_cov_15.207877:1-578 [pilon] Processing NODE_14198_length_243_cov_12.631148:1-243 [pilon] NODE_9867_length_331_cov_12.138095:1-331 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 51, Coverage: 3, minDepth: 5 [pilon] Confirmed 99 of 331 bases (29.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9867_length_331_cov_12.138095:1-331 [pilon] Processing NODE_15137_length_198_cov_5.987013:1-198 [pilon] NODE_5967_length_543_cov_27.864929:1-543 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 287, Coverage: 34, minDepth: 9 [pilon] Confirmed 386 of 543 bases (71.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5967_length_543_cov_27.864929:1-543 [pilon] Processing NODE_3111_length_849_cov_17.717033:1-849 [pilon] NODE_13437_length_243_cov_18.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13437_length_243_cov_18.959016:1-243 [pilon] Processing NODE_10190_length_318_cov_11.304569:1-318 [pilon] NODE_12207_length_243_cov_36.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12207_length_243_cov_36.467213:1-243 [pilon] Processing NODE_8914_length_370_cov_56.871486:1-370 [pilon] NODE_9776_length_336_cov_0.944186:1-336 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 336 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9776_length_336_cov_0.944186:1-336 [pilon] Processing NODE_9880_length_330_cov_28.794258:1-330 [pilon] NODE_9684_length_339_cov_10.899083:1-339 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 53, Coverage: 8, minDepth: 5 [pilon] Confirmed 228 of 339 bases (67.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9684_length_339_cov_10.899083:1-339 [pilon] Processing NODE_8148_length_411_cov_11.051724:1-411 [pilon] NODE_14872_length_243_cov_6.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14872_length_243_cov_6.967213:1-243 [pilon] Processing NODE_5667_length_566_cov_0.325843:1-566 [pilon] NODE_5024_length_617_cov_4.375000:1-617 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 85, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 617 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5024_length_617_cov_4.375000:1-617 [pilon] Processing NODE_14387_length_243_cov_11.155738:1-243 [pilon] NODE_533_length_1877_cov_19.484624:1-1877 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 790, Coverage: 50, minDepth: 13 [pilon] Confirmed 1317 of 1877 bases (70.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_533_length_1877_cov_19.484624:1-1877 [pilon] Processing NODE_4953_length_622_cov_8.740519:1-622 [pilon] NODE_6088_length_533_cov_1.720874:1-533 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 30, Coverage: 7, minDepth: 5 [pilon] Confirmed 309 of 533 bases (57.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6088_length_533_cov_1.720874:1-533 [pilon] Processing NODE_15116_length_213_cov_10.304348:1-213 [pilon] NODE_4441_length_667_cov_2.293040:1-667 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 29, Coverage: 6, minDepth: 5 [pilon] Confirmed 334 of 667 bases (50.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4441_length_667_cov_2.293040:1-667 [pilon] Processing NODE_11450_length_265_cov_9.291667:1-265 [pilon] NODE_1307_length_1337_cov_14.006579:1-1337 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 420, Coverage: 32, minDepth: 8 [pilon] Confirmed 1048 of 1337 bases (78.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1307_length_1337_cov_14.006579:1-1337 [pilon] Processing NODE_10830_length_291_cov_19.429412:1-291 [pilon] NODE_4600_length_653_cov_2.960526:1-653 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 42, Coverage: 8, minDepth: 5 [pilon] Confirmed 415 of 653 bases (63.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4600_length_653_cov_2.960526:1-653 [pilon] Processing NODE_10974_length_285_cov_17.774390:1-285 [pilon] NODE_14712_length_243_cov_8.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14712_length_243_cov_8.483607:1-243 [pilon] Processing NODE_8449_length_396_cov_71.370909:1-396 [pilon] NODE_13151_length_243_cov_21.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13151_length_243_cov_21.508197:1-243 [pilon] NODE_14198_length_243_cov_12.631148:1-243 log: [pilon] Processing NODE_2344_length_1002_cov_1.137344:1-1002 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14198_length_243_cov_12.631148:1-243 [pilon] Processing NODE_8477_length_395_cov_25.186131:1-395 [pilon] NODE_4586_length_654_cov_28.266417:1-654 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 337, Coverage: 46, minDepth: 12 [pilon] Confirmed 560 of 654 bases (85.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4586_length_654_cov_28.266417:1-654 [pilon] Processing NODE_3791_length_741_cov_24.312903:1-741 [pilon] NODE_13091_length_243_cov_22.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13091_length_243_cov_22.040984:1-243 [pilon] Processing NODE_9001_length_366_cov_26.416327:1-366 [pilon] NODE_12357_length_243_cov_31.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12357_length_243_cov_31.909836:1-243 [pilon] Processing NODE_8845_length_375_cov_8.566929:1-375 [pilon] NODE_2803_length_909_cov_0.884518:1-909 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 24, Coverage: 3, minDepth: 5 [pilon] Confirmed 232 of 909 bases (25.52%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2803_length_909_cov_0.884518:1-909 [pilon] Processing NODE_7584_length_438_cov_26.479495:1-438 [pilon] NODE_4655_length_648_cov_1.521822:1-648 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 229 of 648 bases (35.34%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4655_length_648_cov_1.521822:1-648 [pilon] Processing NODE_7575_length_439_cov_17.179245:1-439 [pilon] NODE_932_length_1539_cov_41.311707:1-1539 log: [pilon] frags shovill.bam: coverage 94 [pilon] Total Reads: 1385, Coverage: 94, minDepth: 24 [pilon] Confirmed 1321 of 1539 bases (85.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_932_length_1539_cov_41.311707:1-1539 [pilon] Processing NODE_1299_length_1341_cov_18.363934:1-1341 [pilon] NODE_12959_length_243_cov_23.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12959_length_243_cov_23.368852:1-243 [pilon] Processing NODE_8249_length_406_cov_22.852632:1-406 [pilon] NODE_4763_length_638_cov_25.232108:1-638 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 310, Coverage: 32, minDepth: 8 [pilon] Confirmed 478 of 638 bases (74.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4763_length_638_cov_25.232108:1-638 [pilon] Processing NODE_1629_length_1206_cov_27.983410:1-1206 [pilon] NODE_6091_length_533_cov_1.016990:1-533 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 113 of 533 bases (21.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6091_length_533_cov_1.016990:1-533 [pilon] Processing NODE_6326_length_515_cov_16.068528:1-515 [pilon] NODE_5667_length_566_cov_0.325843:1-566 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 566 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5667_length_566_cov_0.325843:1-566 [pilon] Processing NODE_2797_length_909_cov_25.276650:1-909 [pilon] NODE_15137_length_198_cov_5.987013:1-198 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 198 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15137_length_198_cov_5.987013:1-198 [pilon] Processing NODE_1415_length_1292_cov_27.161401:1-1292 [pilon] NODE_4953_length_622_cov_8.740519:1-622 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 163, Coverage: 19, minDepth: 5 [pilon] Confirmed 516 of 622 bases (82.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4953_length_622_cov_8.740519:1-622 [pilon] Processing NODE_6141_length_529_cov_1.343137:1-529 [pilon] NODE_489_length_1919_cov_2.720245:1-1919 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 147, Coverage: 10, minDepth: 5 [pilon] Confirmed 1680 of 1919 bases (87.55%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_489_length_1919_cov_2.720245:1-1919 [pilon] Processing NODE_9541_length_345_cov_6.656250:1-345 [pilon] NODE_3193_length_834_cov_0.516129:1-834 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 16, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 834 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3193_length_834_cov_0.516129:1-834 [pilon] Processing NODE_12404_length_243_cov_30.827869:1-243 [pilon] NODE_9968_length_327_cov_17.271845:1-327 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 87, Coverage: 7, minDepth: 5 [pilon] Confirmed 205 of 327 bases (62.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9968_length_327_cov_17.271845:1-327 [pilon] Processing NODE_3564_length_775_cov_12.649847:1-775 [pilon] NODE_3111_length_849_cov_17.717033:1-849 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 322, Coverage: 22, minDepth: 6 [pilon] Confirmed 680 of 849 bases (80.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3111_length_849_cov_17.717033:1-849 [pilon] Processing NODE_4389_length_672_cov_21.705989:1-672 [pilon] NODE_10190_length_318_cov_11.304569:1-318 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 47, Coverage: 3, minDepth: 5 [pilon] Confirmed 99 of 318 bases (31.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10190_length_318_cov_11.304569:1-318 [pilon] Processing NODE_8227_length_407_cov_17.884615:1-407 [pilon] NODE_8914_length_370_cov_56.871486:1-370 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 308, Coverage: 56, minDepth: 14 [pilon] Confirmed 307 of 370 bases (82.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8914_length_370_cov_56.871486:1-370 [pilon] Processing NODE_9279_length_354_cov_27.154506:1-354 [pilon] NODE_10830_length_291_cov_19.429412:1-291 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 75, Coverage: 3, minDepth: 5 [pilon] Confirmed 125 of 291 bases (42.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10830_length_291_cov_19.429412:1-291 [pilon] Processing NODE_4683_length_645_cov_2.681298:1-645 [pilon] NODE_15116_length_213_cov_10.304348:1-213 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 213 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15116_length_213_cov_10.304348:1-213 [pilon] Processing NODE_341_length_2135_cov_29.541708:1-2135 [pilon] NODE_9880_length_330_cov_28.794258:1-330 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 136, Coverage: 7, minDepth: 5 [pilon] Confirmed 157 of 330 bases (47.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9880_length_330_cov_28.794258:1-330 [pilon] Processing NODE_9685_length_339_cov_10.366972:1-339 [pilon] NODE_8148_length_411_cov_11.051724:1-411 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 69, Coverage: 8, minDepth: 5 [pilon] Confirmed 209 of 411 bases (50.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8148_length_411_cov_11.051724:1-411 [pilon] Processing NODE_5895_length_548_cov_9.655738:1-548 [pilon] NODE_14387_length_243_cov_11.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14387_length_243_cov_11.155738:1-243 [pilon] NODE_8449_length_396_cov_71.370909:1-396 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 422, Coverage: 78, minDepth: 20 [pilon] Confirmed 349 of 396 bases (88.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8449_length_396_cov_71.370909:1-396 [pilon] Processing NODE_14286_length_243_cov_11.950820:1-243 [pilon] Processing NODE_2490_length_969_cov_9.987028:1-969 [pilon] NODE_11450_length_265_cov_9.291667:1-265 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 25, Coverage: 3, minDepth: 5 [pilon] Confirmed 43 of 265 bases (16.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11450_length_265_cov_9.291667:1-265 [pilon] Processing NODE_9865_length_331_cov_17.852381:1-331 [pilon] NODE_9001_length_366_cov_26.416327:1-366 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 136, Coverage: 18, minDepth: 5 [pilon] Confirmed 254 of 366 bases (69.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9001_length_366_cov_26.416327:1-366 [pilon] NODE_10974_length_285_cov_17.774390:1-285 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 64, Coverage: 9, minDepth: 5 [pilon] Confirmed 186 of 285 bases (65.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_9768_length_336_cov_9.823256:1-336 [pilon] Finished processing NODE_10974_length_285_cov_17.774390:1-285 [pilon] Processing NODE_7209_length_459_cov_29.136095:1-459 [pilon] NODE_8477_length_395_cov_25.186131:1-395 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 172, Coverage: 18, minDepth: 5 [pilon] Confirmed 312 of 395 bases (78.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_2344_length_1002_cov_1.137344:1-1002 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 44, Coverage: 5, minDepth: 5 [pilon] Confirmed 446 of 1002 bases (44.51%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8477_length_395_cov_25.186131:1-395 [pilon] Finished processing NODE_2344_length_1002_cov_1.137344:1-1002 [pilon] Processing NODE_13854_length_243_cov_15.286885:1-243 [pilon] Processing NODE_12726_length_243_cov_25.909836:1-243 [pilon] NODE_1299_length_1341_cov_18.363934:1-1341 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 543, Coverage: 34, minDepth: 9 [pilon] Confirmed 1138 of 1341 bases (84.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1299_length_1341_cov_18.363934:1-1341 [pilon] Processing NODE_6469_length_505_cov_61.848958:1-505 [pilon] NODE_3791_length_741_cov_24.312903:1-741 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 352, Coverage: 23, minDepth: 6 [pilon] Confirmed 590 of 741 bases (79.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3791_length_741_cov_24.312903:1-741 [pilon] Processing NODE_3742_length_749_cov_13.420382:1-749 [pilon] NODE_8845_length_375_cov_8.566929:1-375 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 51, Coverage: 9, minDepth: 5 [pilon] Confirmed 266 of 375 bases (70.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8845_length_375_cov_8.566929:1-375 [pilon] Processing NODE_9613_length_341_cov_54.972727:1-341 [pilon] NODE_2797_length_909_cov_25.276650:1-909 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 498, Coverage: 35, minDepth: 9 [pilon] Confirmed 653 of 909 bases (71.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2797_length_909_cov_25.276650:1-909 [pilon] Processing NODE_6132_length_529_cov_23.924020:1-529 [pilon] NODE_6141_length_529_cov_1.343137:1-529 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 529 bases (24.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6141_length_529_cov_1.343137:1-529 [pilon] Processing NODE_5907_length_547_cov_16.394366:1-547 [pilon] NODE_7584_length_438_cov_26.479495:1-438 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 192, Coverage: 13, minDepth: 5 [pilon] Confirmed 257 of 438 bases (58.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7584_length_438_cov_26.479495:1-438 [pilon] Processing NODE_13592_length_243_cov_17.573770:1-243 [pilon] NODE_8249_length_406_cov_22.852632:1-406 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 167, Coverage: 20, minDepth: 5 [pilon] Confirmed 339 of 406 bases (83.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8249_length_406_cov_22.852632:1-406 [pilon] Processing NODE_11073_length_280_cov_19.232704:1-280 [pilon] NODE_3564_length_775_cov_12.649847:1-775 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 227, Coverage: 20, minDepth: 5 [pilon] Confirmed 534 of 775 bases (68.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3564_length_775_cov_12.649847:1-775 [pilon] Processing NODE_10184_length_318_cov_14.071066:1-318 [pilon] NODE_9541_length_345_cov_6.656250:1-345 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 37, Coverage: 2, minDepth: 5 [pilon] Confirmed 85 of 345 bases (24.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9541_length_345_cov_6.656250:1-345 [pilon] Processing NODE_15257_length_125_cov_18.500000:1-125 [pilon] NODE_7575_length_439_cov_17.179245:1-439 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 125, Coverage: 21, minDepth: 5 [pilon] Confirmed 324 of 439 bases (73.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7575_length_439_cov_17.179245:1-439 [pilon] Processing NODE_14540_length_243_cov_9.975410:1-243 [pilon] NODE_6326_length_515_cov_16.068528:1-515 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 127, Coverage: 15, minDepth: 5 [pilon] Confirmed 329 of 515 bases (63.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6326_length_515_cov_16.068528:1-515 [pilon] Processing NODE_14809_length_243_cov_7.647541:1-243 [pilon] NODE_1629_length_1206_cov_27.983410:1-1206 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 788, Coverage: 49, minDepth: 12 [pilon] Confirmed 1064 of 1206 bases (88.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1629_length_1206_cov_27.983410:1-1206 [pilon] Processing NODE_11524_length_263_cov_11.838028:1-263 [pilon] NODE_12404_length_243_cov_30.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 92, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12404_length_243_cov_30.827869:1-243 [pilon] Processing NODE_13773_length_243_cov_15.860656:1-243 [pilon] NODE_8227_length_407_cov_17.884615:1-407 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 115, Coverage: 19, minDepth: 5 [pilon] Confirmed 326 of 407 bases (80.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8227_length_407_cov_17.884615:1-407 [pilon] Processing NODE_1270_length_1354_cov_11.841849:1-1354 [pilon] NODE_2490_length_969_cov_9.987028:1-969 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 211, Coverage: 19, minDepth: 5 [pilon] Confirmed 724 of 969 bases (74.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2490_length_969_cov_9.987028:1-969 [pilon] Processing NODE_4565_length_656_cov_22.856075:1-656 [pilon] NODE_1415_length_1292_cov_27.161401:1-1292 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 877, Coverage: 40, minDepth: 10 [pilon] Confirmed 1142 of 1292 bases (88.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1415_length_1292_cov_27.161401:1-1292 [pilon] Processing NODE_3115_length_849_cov_1.574176:1-849 [pilon] NODE_9279_length_354_cov_27.154506:1-354 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 119, Coverage: 14, minDepth: 5 [pilon] Confirmed 210 of 354 bases (59.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9279_length_354_cov_27.154506:1-354 [pilon] Processing NODE_14160_length_243_cov_13.008197:1-243 [pilon] NODE_4389_length_672_cov_21.705989:1-672 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 258, Coverage: 28, minDepth: 7 [pilon] Confirmed 555 of 672 bases (82.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4389_length_672_cov_21.705989:1-672 [pilon] Processing NODE_7359_length_450_cov_16.832827:1-450 [pilon] NODE_4683_length_645_cov_2.681298:1-645 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 40, Coverage: 8, minDepth: 5 [pilon] Confirmed 424 of 645 bases (65.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4683_length_645_cov_2.681298:1-645 [pilon] Processing NODE_824_length_1612_cov_2.112005:1-1612 [pilon] NODE_9768_length_336_cov_9.823256:1-336 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 57, Coverage: 5, minDepth: 5 [pilon] Confirmed 179 of 336 bases (53.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9768_length_336_cov_9.823256:1-336 [pilon] Processing NODE_6576_length_498_cov_25.514589:1-498 [pilon] NODE_9685_length_339_cov_10.366972:1-339 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 52, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 339 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9685_length_339_cov_10.366972:1-339 [pilon] Processing NODE_672_length_1726_cov_33.123364:1-1726 [pilon] NODE_5895_length_548_cov_9.655738:1-548 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 130, Coverage: 15, minDepth: 5 [pilon] Confirmed 290 of 548 bases (52.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5895_length_548_cov_9.655738:1-548 [pilon] Processing NODE_13272_length_243_cov_20.401639:1-243 [pilon] NODE_9865_length_331_cov_17.852381:1-331 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 85, Coverage: 4, minDepth: 5 [pilon] Confirmed 137 of 331 bases (41.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9865_length_331_cov_17.852381:1-331 [pilon] Processing NODE_9323_length_353_cov_46.349138:1-353 [pilon] NODE_14286_length_243_cov_11.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14286_length_243_cov_11.950820:1-243 [pilon] Processing NODE_14030_length_243_cov_13.975410:1-243 [pilon] NODE_341_length_2135_cov_29.541708:1-2135 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 1384, Coverage: 78, minDepth: 20 [pilon] Confirmed 1865 of 2135 bases (87.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_341_length_2135_cov_29.541708:1-2135 [pilon] Processing NODE_7786_length_428_cov_32.752443:1-428 [pilon] NODE_10184_length_318_cov_14.071066:1-318 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 39, Coverage: 2, minDepth: 5 [pilon] Confirmed 95 of 318 bases (29.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10184_length_318_cov_14.071066:1-318 [pilon] Processing NODE_7356_length_450_cov_18.513678:1-450 [pilon] NODE_6132_length_529_cov_23.924020:1-529 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 209, Coverage: 27, minDepth: 7 [pilon] Confirmed 367 of 529 bases (69.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6132_length_529_cov_23.924020:1-529 [pilon] Processing NODE_9373_length_351_cov_19.252174:1-351 [pilon] NODE_13854_length_243_cov_15.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13854_length_243_cov_15.286885:1-243 [pilon] Processing NODE_4452_length_666_cov_6.291743:1-666 [pilon] NODE_7209_length_459_cov_29.136095:1-459 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 200, Coverage: 27, minDepth: 7 [pilon] Confirmed 365 of 459 bases (79.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7209_length_459_cov_29.136095:1-459 [pilon] Processing NODE_10712_length_297_cov_17.642045:1-297 [pilon] NODE_12726_length_243_cov_25.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12726_length_243_cov_25.909836:1-243 [pilon] Processing NODE_5756_length_559_cov_13.908676:1-559 [pilon] NODE_6469_length_505_cov_61.848958:1-505 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 528, Coverage: 90, minDepth: 23 [pilon] Confirmed 444 of 505 bases (87.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6469_length_505_cov_61.848958:1-505 [pilon] Processing NODE_8710_length_381_cov_57.523077:1-381 [pilon] NODE_3742_length_749_cov_13.420382:1-749 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 223, Coverage: 27, minDepth: 7 [pilon] Confirmed 556 of 749 bases (74.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3742_length_749_cov_13.420382:1-749 [pilon] Processing NODE_14178_length_243_cov_12.778689:1-243 [pilon] NODE_9613_length_341_cov_54.972727:1-341 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 275, Coverage: 44, minDepth: 11 [pilon] Confirmed 307 of 341 bases (90.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9613_length_341_cov_54.972727:1-341 [pilon] Processing NODE_4716_length_642_cov_11.032630:1-642 [pilon] NODE_13592_length_243_cov_17.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13592_length_243_cov_17.573770:1-243 [pilon] Processing NODE_11208_length_276_cov_9.374194:1-276 [pilon] NODE_11073_length_280_cov_19.232704:1-280 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 73, Coverage: 11, minDepth: 5 [pilon] Confirmed 231 of 280 bases (82.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11073_length_280_cov_19.232704:1-280 [pilon] Processing NODE_10057_length_323_cov_16.198020:1-323 [pilon] NODE_5907_length_547_cov_16.394366:1-547 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 158, Coverage: 31, minDepth: 8 [pilon] Confirmed 410 of 547 bases (74.95%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5907_length_547_cov_16.394366:1-547 [pilon] Processing NODE_13340_length_243_cov_19.918033:1-243 [pilon] NODE_14540_length_243_cov_9.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14540_length_243_cov_9.975410:1-243 [pilon] Processing NODE_8837_length_375_cov_17.102362:1-375 [pilon] NODE_4565_length_656_cov_22.856075:1-656 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 298, Coverage: 31, minDepth: 8 [pilon] Confirmed 502 of 656 bases (76.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4565_length_656_cov_22.856075:1-656 [pilon] Processing NODE_2931_length_885_cov_27.662304:1-885 [pilon] NODE_15257_length_125_cov_18.500000:1-125 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 125 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15257_length_125_cov_18.500000:1-125 [pilon] Processing NODE_14777_length_243_cov_7.950820:1-243 [pilon] NODE_6576_length_498_cov_25.514589:1-498 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 207, Coverage: 25, minDepth: 6 [pilon] Confirmed 341 of 498 bases (68.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6576_length_498_cov_25.514589:1-498 [pilon] Processing NODE_6807_length_483_cov_1.069061:1-483 [pilon] NODE_14809_length_243_cov_7.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14809_length_243_cov_7.647541:1-243 [pilon] Processing NODE_13176_length_243_cov_21.303279:1-243 [pilon] NODE_3115_length_849_cov_1.574176:1-849 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 41, Coverage: 6, minDepth: 5 [pilon] Confirmed 489 of 849 bases (57.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3115_length_849_cov_1.574176:1-849 [pilon] Processing NODE_12386_length_243_cov_31.344262:1-243 [pilon] NODE_11524_length_263_cov_11.838028:1-263 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 43, Coverage: 5, minDepth: 5 [pilon] Confirmed 153 of 263 bases (58.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11524_length_263_cov_11.838028:1-263 [pilon] Processing NODE_4880_length_628_cov_22.767258:1-628 [pilon] NODE_1270_length_1354_cov_11.841849:1-1354 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 408, Coverage: 24, minDepth: 6 [pilon] Confirmed 1048 of 1354 bases (77.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1270_length_1354_cov_11.841849:1-1354 [pilon] Processing NODE_6708_length_489_cov_45.483696:1-489 [pilon] NODE_13773_length_243_cov_15.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13773_length_243_cov_15.860656:1-243 [pilon] Processing NODE_10189_length_318_cov_11.751269:1-318 [pilon] NODE_14160_length_243_cov_13.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14160_length_243_cov_13.008197:1-243 [pilon] Processing NODE_7778_length_429_cov_1.188312:1-429 [pilon] NODE_7359_length_450_cov_16.832827:1-450 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 133, Coverage: 11, minDepth: 5 [pilon] Confirmed 278 of 450 bases (61.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7359_length_450_cov_16.832827:1-450 [pilon] Processing NODE_4851_length_631_cov_1.550980:1-631 [pilon] NODE_824_length_1612_cov_2.112005:1-1612 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 99, Coverage: 8, minDepth: 5 [pilon] Confirmed 1173 of 1612 bases (72.77%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_824_length_1612_cov_2.112005:1-1612 [pilon] Processing NODE_5661_length_566_cov_3.570787:1-566 [pilon] NODE_7356_length_450_cov_18.513678:1-450 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 136, Coverage: 20, minDepth: 5 [pilon] Confirmed 352 of 450 bases (78.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7356_length_450_cov_18.513678:1-450 [pilon] Processing NODE_13128_length_243_cov_21.680328:1-243 [pilon] NODE_13272_length_243_cov_20.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13272_length_243_cov_20.401639:1-243 [pilon] Processing NODE_2593_length_946_cov_39.975758:1-946 [pilon] NODE_672_length_1726_cov_33.123364:1-1726 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 1203, Coverage: 86, minDepth: 22 [pilon] Confirmed 1557 of 1726 bases (90.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_672_length_1726_cov_33.123364:1-1726 [pilon] Processing NODE_14022_length_243_cov_14.024590:1-243 [pilon] NODE_14030_length_243_cov_13.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14030_length_243_cov_13.975410:1-243 [pilon] Processing NODE_2810_length_907_cov_45.173028:1-907 [pilon] NODE_9323_length_353_cov_46.349138:1-353 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 242, Coverage: 38, minDepth: 10 [pilon] Confirmed 319 of 353 bases (90.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9323_length_353_cov_46.349138:1-353 [pilon] Processing NODE_13875_length_243_cov_15.098361:1-243 [pilon] NODE_4716_length_642_cov_11.032630:1-642 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 131, Coverage: 26, minDepth: 7 [pilon] Confirmed 492 of 642 bases (76.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4716_length_642_cov_11.032630:1-642 [pilon] Processing NODE_14999_length_243_cov_5.393443:1-243 [pilon] NODE_9373_length_351_cov_19.252174:1-351 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 102, Coverage: 10, minDepth: 5 [pilon] Confirmed 230 of 351 bases (65.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9373_length_351_cov_19.252174:1-351 [pilon] Processing NODE_8678_length_384_cov_10.391635:1-384 [pilon] NODE_7786_length_428_cov_32.752443:1-428 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 237, Coverage: 45, minDepth: 11 [pilon] Confirmed 375 of 428 bases (87.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7786_length_428_cov_32.752443:1-428 [pilon] Processing NODE_13148_length_243_cov_21.516393:1-243 [pilon] NODE_4452_length_666_cov_6.291743:1-666 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 90, Coverage: 16, minDepth: 5 [pilon] Confirmed 612 of 666 bases (91.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4452_length_666_cov_6.291743:1-666 [pilon] Processing NODE_11561_length_261_cov_27.035714:1-261 [pilon] NODE_14178_length_243_cov_12.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14178_length_243_cov_12.778689:1-243 [pilon] Processing NODE_3571_length_774_cov_10.952527:1-774 [pilon] NODE_5756_length_559_cov_13.908676:1-559 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 140, Coverage: 15, minDepth: 5 [pilon] Confirmed 514 of 559 bases (91.95%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5756_length_559_cov_13.908676:1-559 [pilon] Processing NODE_257_length_2313_cov_18.074361:1-2313 [pilon] NODE_8710_length_381_cov_57.523077:1-381 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 339, Coverage: 54, minDepth: 14 [pilon] Confirmed 331 of 381 bases (86.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8710_length_381_cov_57.523077:1-381 [pilon] Processing NODE_5664_length_566_cov_1.604494:1-566 [pilon] NODE_10712_length_297_cov_17.642045:1-297 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 69, Coverage: 3, minDepth: 5 [pilon] Confirmed 66 of 297 bases (22.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10712_length_297_cov_17.642045:1-297 [pilon] Processing NODE_13987_length_243_cov_14.245902:1-243 [pilon] NODE_10057_length_323_cov_16.198020:1-323 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 70, Coverage: 5, minDepth: 5 [pilon] Confirmed 173 of 323 bases (53.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10057_length_323_cov_16.198020:1-323 [pilon] Processing NODE_2985_length_876_cov_13.698013:1-876 [pilon] NODE_11208_length_276_cov_9.374194:1-276 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 28, Coverage: 2, minDepth: 5 [pilon] Confirmed 32 of 276 bases (11.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11208_length_276_cov_9.374194:1-276 [pilon] Processing NODE_8137_length_411_cov_22.472414:1-411 [pilon] NODE_8837_length_375_cov_17.102362:1-375 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 110, Coverage: 10, minDepth: 5 [pilon] Confirmed 203 of 375 bases (54.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8837_length_375_cov_17.102362:1-375 [pilon] Processing NODE_492_length_1916_cov_2.867409:1-1916 [pilon] NODE_13128_length_243_cov_21.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13128_length_243_cov_21.680328:1-243 [pilon] Processing NODE_2933_length_885_cov_18.880890:1-885 [pilon] NODE_13340_length_243_cov_19.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13340_length_243_cov_19.918033:1-243 [pilon] Processing NODE_9050_length_363_cov_34.772727:1-363 [pilon] NODE_6807_length_483_cov_1.069061:1-483 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 483 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6807_length_483_cov_1.069061:1-483 [pilon] Processing NODE_974_length_1511_cov_15.873381:1-1511 [pilon] NODE_2931_length_885_cov_27.662304:1-885 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 514, Coverage: 39, minDepth: 10 [pilon] Confirmed 626 of 885 bases (70.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2931_length_885_cov_27.662304:1-885 [pilon] Processing NODE_13299_length_243_cov_20.237705:1-243 [pilon] NODE_13176_length_243_cov_21.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13176_length_243_cov_21.303279:1-243 [pilon] Processing NODE_11422_length_267_cov_9.671233:1-267 [pilon] NODE_14777_length_243_cov_7.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14777_length_243_cov_7.950820:1-243 [pilon] Processing NODE_12996_length_243_cov_22.967213:1-243 [pilon] NODE_12386_length_243_cov_31.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12386_length_243_cov_31.344262:1-243 [pilon] Processing NODE_11984_length_246_cov_25.440000:1-246 [pilon] NODE_4851_length_631_cov_1.550980:1-631 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 188 of 631 bases (29.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4851_length_631_cov_1.550980:1-631 [pilon] Processing NODE_3902_length_728_cov_1.085667:1-728 [pilon] NODE_4880_length_628_cov_22.767258:1-628 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 300, Coverage: 43, minDepth: 11 [pilon] Confirmed 480 of 628 bases (76.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4880_length_628_cov_22.767258:1-628 [pilon] Processing NODE_13134_length_243_cov_21.647541:1-243 [pilon] NODE_10189_length_318_cov_11.751269:1-318 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 55, Coverage: 3, minDepth: 5 [pilon] Confirmed 81 of 318 bases (25.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10189_length_318_cov_11.751269:1-318 [pilon] Processing NODE_196_length_2522_cov_15.932528:1-2522 [pilon] NODE_2810_length_907_cov_45.173028:1-907 log: [pilon] frags shovill.bam: coverage 83 [pilon] Total Reads: 782, Coverage: 83, minDepth: 21 [pilon] Confirmed 712 of 907 bases (78.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2810_length_907_cov_45.173028:1-907 [pilon] Processing NODE_1073_length_1455_cov_10.698651:1-1455 [pilon] NODE_6708_length_489_cov_45.483696:1-489 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 400, Coverage: 57, minDepth: 14 [pilon] Confirmed 386 of 489 bases (78.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6708_length_489_cov_45.483696:1-489 [pilon] Processing NODE_7934_length_421_cov_13.506667:1-421 [pilon] NODE_7778_length_429_cov_1.188312:1-429 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 429 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7778_length_429_cov_1.188312:1-429 [pilon] Processing NODE_3884_length_730_cov_4.431856:1-730 [pilon] NODE_14999_length_243_cov_5.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14999_length_243_cov_5.393443:1-243 [pilon] Processing NODE_2451_length_977_cov_20.885514:1-977 [pilon] NODE_5661_length_566_cov_3.570787:1-566 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 44, Coverage: 9, minDepth: 5 [pilon] Confirmed 388 of 566 bases (68.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5661_length_566_cov_3.570787:1-566 [pilon] Processing NODE_162_length_2681_cov_16.390625:1-2681 [pilon] NODE_3571_length_774_cov_10.952527:1-774 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 171, Coverage: 24, minDepth: 6 [pilon] Confirmed 563 of 774 bases (72.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3571_length_774_cov_10.952527:1-774 [pilon] Processing NODE_11568_length_261_cov_24.135714:1-261 [pilon] NODE_2593_length_946_cov_39.975758:1-946 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 716, Coverage: 81, minDepth: 20 [pilon] Confirmed 870 of 946 bases (91.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2593_length_946_cov_39.975758:1-946 [pilon] Processing NODE_8463_length_396_cov_13.149091:1-396 [pilon] NODE_14022_length_243_cov_14.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14022_length_243_cov_14.024590:1-243 [pilon] Processing NODE_9226_length_357_cov_10.686441:1-357 [pilon] NODE_8678_length_384_cov_10.391635:1-384 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 56, Coverage: 5, minDepth: 5 [pilon] Confirmed 193 of 384 bases (50.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8678_length_384_cov_10.391635:1-384 [pilon] Processing NODE_5145_length_606_cov_15.676289:1-606 [pilon] NODE_13875_length_243_cov_15.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13875_length_243_cov_15.098361:1-243 [pilon] Processing NODE_2340_length_1002_cov_27.104427:1-1002 [pilon] NODE_13148_length_243_cov_21.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13148_length_243_cov_21.516393:1-243 [pilon] Processing NODE_10226_length_315_cov_39.149485:1-315 [pilon] NODE_11561_length_261_cov_27.035714:1-261 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 87, Coverage: 8, minDepth: 5 [pilon] Confirmed 204 of 261 bases (78.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11561_length_261_cov_27.035714:1-261 [pilon] Processing NODE_9794_length_334_cov_19.718310:1-334 [pilon] NODE_2933_length_885_cov_18.880890:1-885 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 331, Coverage: 26, minDepth: 7 [pilon] Confirmed 753 of 885 bases (85.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2933_length_885_cov_18.880890:1-885 [pilon] Processing NODE_8785_length_378_cov_15.673152:1-378 [pilon] NODE_13987_length_243_cov_14.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13987_length_243_cov_14.245902:1-243 [pilon] Processing NODE_261_length_2305_cov_2.149267:1-2305 [pilon] NODE_257_length_2313_cov_18.074361:1-2313 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 1005, Coverage: 39, minDepth: 10 [pilon] Confirmed 2188 of 2313 bases (94.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_257_length_2313_cov_18.074361:1-2313 [pilon] Processing NODE_8895_length_372_cov_18.717131:1-372 [pilon] NODE_5664_length_566_cov_1.604494:1-566 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 187 of 566 bases (33.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5664_length_566_cov_1.604494:1-566 [pilon] Processing NODE_37_length_4126_cov_22.054432:1-4126 [pilon] NODE_1073_length_1455_cov_10.698651:1-1455 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 389, Coverage: 27, minDepth: 7 [pilon] Confirmed 1340 of 1455 bases (92.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1073_length_1455_cov_10.698651:1-1455 [pilon] Processing NODE_4154_length_698_cov_28.310225:1-698 [pilon] NODE_2985_length_876_cov_13.698013:1-876 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 247, Coverage: 22, minDepth: 6 [pilon] Confirmed 589 of 876 bases (67.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2985_length_876_cov_13.698013:1-876 [pilon] Processing NODE_5953_length_544_cov_18.101655:1-544 [pilon] NODE_492_length_1916_cov_2.867409:1-1916 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 164, Coverage: 11, minDepth: 5 [pilon] Confirmed 1185 of 1916 bases (61.85%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_492_length_1916_cov_2.867409:1-1916 [pilon] Processing NODE_2660_length_936_cov_2.607362:1-936 [pilon] NODE_11422_length_267_cov_9.671233:1-267 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11422_length_267_cov_9.671233:1-267 [pilon] Processing NODE_5472_length_579_cov_19.292576:1-579 [pilon] NODE_8137_length_411_cov_22.472414:1-411 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 152, Coverage: 22, minDepth: 6 [pilon] Confirmed 275 of 411 bases (66.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8137_length_411_cov_22.472414:1-411 [pilon] Processing NODE_2343_length_1002_cov_9.877412:1-1002 [pilon] NODE_9050_length_363_cov_34.772727:1-363 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 186, Coverage: 35, minDepth: 9 [pilon] Confirmed 313 of 363 bases (86.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9050_length_363_cov_34.772727:1-363 [pilon] Processing NODE_3050_length_863_cov_21.316712:1-863 [pilon] NODE_13299_length_243_cov_20.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13299_length_243_cov_20.237705:1-243 [pilon] Processing NODE_3857_length_733_cov_9.982026:1-733 [pilon] NODE_12996_length_243_cov_22.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12996_length_243_cov_22.967213:1-243 [pilon] Processing NODE_3714_length_753_cov_3.262658:1-753 [pilon] NODE_3902_length_728_cov_1.085667:1-728 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 728 bases (17.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3902_length_728_cov_1.085667:1-728 [pilon] Processing NODE_10381_length_309_cov_25.244681:1-309 [pilon] NODE_11984_length_246_cov_25.440000:1-246 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 64, Coverage: 4, minDepth: 5 [pilon] Confirmed 83 of 246 bases (33.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11984_length_246_cov_25.440000:1-246 [pilon] Processing NODE_9979_length_327_cov_10.233010:1-327 [pilon] NODE_974_length_1511_cov_15.873381:1-1511 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 566, Coverage: 37, minDepth: 9 [pilon] Confirmed 1152 of 1511 bases (76.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_974_length_1511_cov_15.873381:1-1511 [pilon] Processing NODE_7238_length_458_cov_3.207715:1-458 [pilon] NODE_11568_length_261_cov_24.135714:1-261 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 67, Coverage: 4, minDepth: 5 [pilon] Confirmed 129 of 261 bases (49.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11568_length_261_cov_24.135714:1-261 [pilon] Processing NODE_15027_length_243_cov_5.106557:1-243 [pilon] NODE_2451_length_977_cov_20.885514:1-977 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 455, Coverage: 54, minDepth: 14 [pilon] Confirmed 618 of 977 bases (63.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2451_length_977_cov_20.885514:1-977 [pilon] Processing NODE_2435_length_981_cov_3.418605:1-981 [pilon] NODE_13134_length_243_cov_21.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13134_length_243_cov_21.647541:1-243 [pilon] Processing NODE_7128_length_464_cov_14.997085:1-464 [pilon] NODE_7934_length_421_cov_13.506667:1-421 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 91, Coverage: 11, minDepth: 5 [pilon] Confirmed 307 of 421 bases (72.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7934_length_421_cov_13.506667:1-421 [pilon] Processing NODE_3491_length_785_cov_38.694277:1-785 [pilon] NODE_3884_length_730_cov_4.431856:1-730 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 60, Coverage: 10, minDepth: 5 [pilon] Confirmed 531 of 730 bases (72.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3884_length_730_cov_4.431856:1-730 [pilon] Processing NODE_14531_length_243_cov_10.016393:1-243 [pilon] NODE_196_length_2522_cov_15.932528:1-2522 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 973, Coverage: 37, minDepth: 9 [pilon] Confirmed 2273 of 2522 bases (90.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_196_length_2522_cov_15.932528:1-2522 [pilon] Processing NODE_12249_length_243_cov_34.663934:1-243 [pilon] NODE_162_length_2681_cov_16.390625:1-2681 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 997, Coverage: 42, minDepth: 11 [pilon] Confirmed 2355 of 2681 bases (87.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_162_length_2681_cov_16.390625:1-2681 [pilon] Processing NODE_14287_length_243_cov_11.942623:1-243 [pilon] NODE_8785_length_378_cov_15.673152:1-378 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 77, Coverage: 11, minDepth: 5 [pilon] Confirmed 228 of 378 bases (60.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8785_length_378_cov_15.673152:1-378 [pilon] Processing NODE_822_length_1612_cov_23.477532:1-1612 [pilon] NODE_8463_length_396_cov_13.149091:1-396 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 65, Coverage: 10, minDepth: 5 [pilon] Confirmed 239 of 396 bases (60.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8463_length_396_cov_13.149091:1-396 [pilon] Processing NODE_12809_length_243_cov_24.918033:1-243 [pilon] NODE_9226_length_357_cov_10.686441:1-357 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 66, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 357 bases (36.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9226_length_357_cov_10.686441:1-357 [pilon] Processing NODE_3376_length_801_cov_8.464706:1-801 [pilon] NODE_4154_length_698_cov_28.310225:1-698 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 405, Coverage: 45, minDepth: 11 [pilon] Confirmed 630 of 698 bases (90.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4154_length_698_cov_28.310225:1-698 [pilon] Processing NODE_3242_length_826_cov_1.984397:1-826 [pilon] NODE_9794_length_334_cov_19.718310:1-334 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 80, Coverage: 9, minDepth: 5 [pilon] Confirmed 223 of 334 bases (66.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9794_length_334_cov_19.718310:1-334 [pilon] Processing NODE_10859_length_290_cov_10.443787:1-290 [pilon] NODE_5145_length_606_cov_15.676289:1-606 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 178, Coverage: 27, minDepth: 7 [pilon] Confirmed 485 of 606 bases (80.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_10226_length_315_cov_39.149485:1-315 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 145, Coverage: 7, minDepth: 5 [pilon] Confirmed 172 of 315 bases (54.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5145_length_606_cov_15.676289:1-606 [pilon] Finished processing NODE_10226_length_315_cov_39.149485:1-315 [pilon] Processing NODE_10984_length_285_cov_14.542683:1-285 [pilon] Processing NODE_12721_length_243_cov_25.959016:1-243 [pilon] NODE_2340_length_1002_cov_27.104427:1-1002 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 505, Coverage: 58, minDepth: 15 [pilon] Confirmed 902 of 1002 bases (90.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2340_length_1002_cov_27.104427:1-1002 [pilon] Processing NODE_15264_length_123_cov_6.000000:1-123 [pilon] NODE_15027_length_243_cov_5.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15027_length_243_cov_5.106557:1-243 [pilon] Processing NODE_10312_length_312_cov_26.968586:1-312 [pilon] NODE_8895_length_372_cov_18.717131:1-372 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 114, Coverage: 11, minDepth: 5 [pilon] Confirmed 244 of 372 bases (65.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8895_length_372_cov_18.717131:1-372 [pilon] Processing NODE_12477_length_243_cov_29.508197:1-243 [pilon] NODE_2435_length_981_cov_3.418605:1-981 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 89, Coverage: 11, minDepth: 5 [pilon] Confirmed 829 of 981 bases (84.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2435_length_981_cov_3.418605:1-981 [pilon] Processing NODE_2521_length_963_cov_1.597387:1-963 [pilon] NODE_261_length_2305_cov_2.149267:1-2305 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 130, Coverage: 7, minDepth: 5 [pilon] Confirmed 1445 of 2305 bases (62.69%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_261_length_2305_cov_2.149267:1-2305 [pilon] Processing NODE_996_length_1496_cov_18.808727:1-1496 [pilon] NODE_5953_length_544_cov_18.101655:1-544 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 161, Coverage: 22, minDepth: 6 [pilon] Confirmed 364 of 544 bases (66.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5953_length_544_cov_18.101655:1-544 [pilon] Processing NODE_7219_length_459_cov_10.408284:1-459 [pilon] NODE_2660_length_936_cov_2.607362:1-936 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 58, Coverage: 8, minDepth: 5 [pilon] Confirmed 604 of 936 bases (64.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2660_length_936_cov_2.607362:1-936 [pilon] Processing NODE_11662_length_258_cov_11.729927:1-258 [pilon] NODE_2343_length_1002_cov_9.877412:1-1002 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 244, Coverage: 25, minDepth: 6 [pilon] Confirmed 799 of 1002 bases (79.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2343_length_1002_cov_9.877412:1-1002 [pilon] Processing NODE_13661_length_243_cov_16.844262:1-243 [pilon] NODE_5472_length_579_cov_19.292576:1-579 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 206, Coverage: 34, minDepth: 9 [pilon] Confirmed 502 of 579 bases (86.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5472_length_579_cov_19.292576:1-579 [pilon] Processing NODE_4890_length_627_cov_17.612648:1-627 [pilon] NODE_10381_length_309_cov_25.244681:1-309 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 84, Coverage: 5, minDepth: 5 [pilon] Confirmed 134 of 309 bases (43.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10381_length_309_cov_25.244681:1-309 [pilon] Processing NODE_7607_length_437_cov_24.563291:1-437 [pilon] NODE_3857_length_733_cov_9.982026:1-733 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 213, Coverage: 18, minDepth: 5 [pilon] Confirmed 644 of 733 bases (87.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3857_length_733_cov_9.982026:1-733 [pilon] Processing NODE_7286_length_455_cov_16.664671:1-455 [pilon] NODE_7238_length_458_cov_3.207715:1-458 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 29, Coverage: 7, minDepth: 5 [pilon] Confirmed 313 of 458 bases (68.34%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7238_length_458_cov_3.207715:1-458 [pilon] Processing NODE_12566_length_243_cov_28.065574:1-243 [pilon] NODE_3050_length_863_cov_21.316712:1-863 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 358, Coverage: 43, minDepth: 11 [pilon] Confirmed 758 of 863 bases (87.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3050_length_863_cov_21.316712:1-863 [pilon] Processing NODE_10002_length_325_cov_15.465686:1-325 [pilon] NODE_7128_length_464_cov_14.997085:1-464 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 99, Coverage: 10, minDepth: 5 [pilon] Confirmed 342 of 464 bases (73.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7128_length_464_cov_14.997085:1-464 [pilon] Processing NODE_6031_length_538_cov_2.333333:1-538 [pilon] NODE_3714_length_753_cov_3.262658:1-753 log: [pilon] NODE_822_length_1612_cov_23.477532:1-1612 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 798, Coverage: 58, minDepth: 15 [pilon] Confirmed 1193 of 1612 bases (74.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_822_length_1612_cov_23.477532:1-1612 [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 54, Coverage: 9, minDepth: 5 [pilon] Confirmed 592 of 753 bases (78.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_2772_length_914_cov_3.593947:1-914 [pilon] Finished processing NODE_3714_length_753_cov_3.262658:1-753 [pilon] Processing NODE_5037_length_616_cov_7.688889:1-616 [pilon] NODE_9979_length_327_cov_10.233010:1-327 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 46, Coverage: 3, minDepth: 5 [pilon] Confirmed 125 of 327 bases (38.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9979_length_327_cov_10.233010:1-327 [pilon] Processing NODE_6689_length_491_cov_17.886486:1-491 [pilon] NODE_37_length_4126_cov_22.054432:1-4126 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 2312, Coverage: 42, minDepth: 11 [pilon] Confirmed 3805 of 4126 bases (92.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_37_length_4126_cov_22.054432:1-4126 [pilon] Processing NODE_15045_length_241_cov_20.158333:1-241 [pilon] NODE_3491_length_785_cov_38.694277:1-785 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 613, Coverage: 70, minDepth: 18 [pilon] Confirmed 670 of 785 bases (85.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3491_length_785_cov_38.694277:1-785 [pilon] Processing NODE_376_length_2086_cov_23.770992:1-2086 [pilon] NODE_14531_length_243_cov_10.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14531_length_243_cov_10.016393:1-243 [pilon] Processing NODE_15255_length_125_cov_21.750000:1-125 [pilon] NODE_3242_length_826_cov_1.984397:1-826 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 44, Coverage: 7, minDepth: 5 [pilon] Confirmed 535 of 826 bases (64.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3242_length_826_cov_1.984397:1-826 [pilon] Processing NODE_2383_length_994_cov_3.052692:1-994 [pilon] NODE_12249_length_243_cov_34.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12249_length_243_cov_34.663934:1-243 [pilon] Processing NODE_10587_length_302_cov_13.243094:1-302 [pilon] NODE_12809_length_243_cov_24.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12809_length_243_cov_24.918033:1-243 [pilon] Processing NODE_9567_length_343_cov_8.135135:1-343 [pilon] NODE_14287_length_243_cov_11.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14287_length_243_cov_11.942623:1-243 [pilon] Processing NODE_8779_length_378_cov_17.618677:1-378 [pilon] NODE_3376_length_801_cov_8.464706:1-801 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 143, Coverage: 23, minDepth: 6 [pilon] Confirmed 720 of 801 bases (89.89%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3376_length_801_cov_8.464706:1-801 [pilon] Processing NODE_7684_length_433_cov_4.801282:1-433 [pilon] NODE_10312_length_312_cov_26.968586:1-312 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 103, Coverage: 11, minDepth: 5 [pilon] Confirmed 243 of 312 bases (77.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10312_length_312_cov_26.968586:1-312 [pilon] Processing NODE_6981_length_473_cov_0.855114:1-473 [pilon] NODE_2521_length_963_cov_1.597387:1-963 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 54, Coverage: 7, minDepth: 5 [pilon] Confirmed 775 of 963 bases (80.48%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2521_length_963_cov_1.597387:1-963 [pilon] Processing NODE_14317_length_243_cov_11.713115:1-243 [pilon] NODE_10984_length_285_cov_14.542683:1-285 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 58, Coverage: 5, minDepth: 5 [pilon] Confirmed 132 of 285 bases (46.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10984_length_285_cov_14.542683:1-285 [pilon] Processing NODE_7163_length_462_cov_1.917889:1-462 [pilon] NODE_10859_length_290_cov_10.443787:1-290 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 290 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10859_length_290_cov_10.443787:1-290 [pilon] Processing NODE_2536_length_960_cov_1.175209:1-960 [pilon] NODE_15264_length_123_cov_6.000000:1-123 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 123 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15264_length_123_cov_6.000000:1-123 [pilon] Processing NODE_8169_length_410_cov_8.629758:1-410 [pilon] NODE_12721_length_243_cov_25.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12721_length_243_cov_25.959016:1-243 [pilon] Processing NODE_11818_length_252_cov_18.122137:1-252 [pilon] NODE_12477_length_243_cov_29.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12477_length_243_cov_29.508197:1-243 [pilon] Processing NODE_6783_length_484_cov_14.107438:1-484 [pilon] NODE_2772_length_914_cov_3.593947:1-914 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 87, Coverage: 11, minDepth: 5 [pilon] Confirmed 703 of 914 bases (76.91%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2772_length_914_cov_3.593947:1-914 [pilon] Processing NODE_9713_length_337_cov_28.180556:1-337 [pilon] NODE_7219_length_459_cov_10.408284:1-459 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 108, Coverage: 8, minDepth: 5 [pilon] Confirmed 382 of 459 bases (83.22%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7219_length_459_cov_10.408284:1-459 [pilon] Processing NODE_11255_length_273_cov_20.717105:1-273 [pilon] NODE_13661_length_243_cov_16.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13661_length_243_cov_16.844262:1-243 [pilon] Processing NODE_4740_length_640_cov_3.541426:1-640 [pilon] NODE_996_length_1496_cov_18.808727:1-1496 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 596, Coverage: 41, minDepth: 10 [pilon] Confirmed 991 of 1496 bases (66.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_996_length_1496_cov_18.808727:1-1496 [pilon] Processing NODE_4220_length_691_cov_37.663158:1-691 [pilon] NODE_11662_length_258_cov_11.729927:1-258 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 29, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11662_length_258_cov_11.729927:1-258 [pilon] Processing NODE_774_length_1642_cov_2.249836:1-1642 [pilon] NODE_12566_length_243_cov_28.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12566_length_243_cov_28.065574:1-243 [pilon] Processing NODE_1137_length_1423_cov_23.403994:1-1423 [pilon] NODE_10002_length_325_cov_15.465686:1-325 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 72, Coverage: 7, minDepth: 5 [pilon] Confirmed 198 of 325 bases (60.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10002_length_325_cov_15.465686:1-325 [pilon] Processing NODE_7526_length_442_cov_1.186916:1-442 [pilon] NODE_7286_length_455_cov_16.664671:1-455 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 111, Coverage: 9, minDepth: 5 [pilon] Confirmed 224 of 455 bases (49.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7286_length_455_cov_16.664671:1-455 [pilon] Processing NODE_10875_length_289_cov_11.434524:1-289 [pilon] NODE_2383_length_994_cov_3.052692:1-994 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 75, Coverage: 10, minDepth: 5 [pilon] Confirmed 835 of 994 bases (84.00%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2383_length_994_cov_3.052692:1-994 [pilon] Processing NODE_8542_length_392_cov_8.959410:1-392 [pilon] NODE_7607_length_437_cov_24.563291:1-437 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 191, Coverage: 35, minDepth: 9 [pilon] Confirmed 374 of 437 bases (85.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7607_length_437_cov_24.563291:1-437 [pilon] Processing NODE_12558_length_243_cov_28.172131:1-243 [pilon] NODE_6031_length_538_cov_2.333333:1-538 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 334 of 538 bases (62.08%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6031_length_538_cov_2.333333:1-538 [pilon] Processing NODE_14763_length_243_cov_8.000000:1-243 [pilon] NODE_4890_length_627_cov_17.612648:1-627 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 206, Coverage: 39, minDepth: 10 [pilon] Confirmed 437 of 627 bases (69.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4890_length_627_cov_17.612648:1-627 [pilon] Processing NODE_6725_length_489_cov_1.293478:1-489 [pilon] NODE_6689_length_491_cov_17.886486:1-491 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 153, Coverage: 20, minDepth: 5 [pilon] Confirmed 360 of 491 bases (73.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6689_length_491_cov_17.886486:1-491 [pilon] Processing NODE_9663_length_339_cov_17.137615:1-339 [pilon] NODE_5037_length_616_cov_7.688889:1-616 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 99, Coverage: 10, minDepth: 5 [pilon] Confirmed 419 of 616 bases (68.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5037_length_616_cov_7.688889:1-616 [pilon] Processing NODE_8666_length_384_cov_15.866920:1-384 [pilon] NODE_15045_length_241_cov_20.158333:1-241 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 55, Coverage: 3, minDepth: 5 [pilon] Confirmed 52 of 241 bases (21.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15045_length_241_cov_20.158333:1-241 [pilon] Processing NODE_10888_length_288_cov_24.622754:1-288 [pilon] NODE_14317_length_243_cov_11.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14317_length_243_cov_11.713115:1-243 [pilon] Processing NODE_8053_length_415_cov_24.044218:1-415 [pilon] NODE_6981_length_473_cov_0.855114:1-473 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 118 of 473 bases (24.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6981_length_473_cov_0.855114:1-473 [pilon] Processing NODE_6224_length_522_cov_43.418953:1-522 [pilon] NODE_15255_length_125_cov_21.750000:1-125 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 125 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15255_length_125_cov_21.750000:1-125 [pilon] Processing NODE_5388_length_585_cov_7.831897:1-585 [pilon] NODE_10587_length_302_cov_13.243094:1-302 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 40, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 302 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10587_length_302_cov_13.243094:1-302 [pilon] Processing NODE_13800_length_243_cov_15.672131:1-243 [pilon] NODE_9567_length_343_cov_8.135135:1-343 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 56, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 343 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9567_length_343_cov_8.135135:1-343 [pilon] Processing NODE_1476_length_1272_cov_3.267593:1-1272 [pilon] NODE_376_length_2086_cov_23.770992:1-2086 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 1155, Coverage: 62, minDepth: 16 [pilon] Confirmed 1771 of 2086 bases (84.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_376_length_2086_cov_23.770992:1-2086 [pilon] Processing NODE_11788_length_253_cov_18.250000:1-253 [pilon] NODE_8779_length_378_cov_17.618677:1-378 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 107, Coverage: 11, minDepth: 5 [pilon] Confirmed 248 of 378 bases (65.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8779_length_378_cov_17.618677:1-378 [pilon] Processing NODE_6190_length_525_cov_6.579208:1-525 [pilon] NODE_7684_length_433_cov_4.801282:1-433 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 34, Coverage: 9, minDepth: 5 [pilon] Confirmed 331 of 433 bases (76.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7684_length_433_cov_4.801282:1-433 [pilon] Processing NODE_3323_length_811_cov_16.889855:1-811 [pilon] NODE_9713_length_337_cov_28.180556:1-337 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 119, Coverage: 4, minDepth: 5 [pilon] Confirmed 144 of 337 bases (42.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9713_length_337_cov_28.180556:1-337 [pilon] Processing NODE_8849_length_374_cov_56.687747:1-374 [pilon] NODE_7163_length_462_cov_1.917889:1-462 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 234 of 462 bases (50.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7163_length_462_cov_1.917889:1-462 [pilon] Processing NODE_12967_length_243_cov_23.286885:1-243 [pilon] NODE_11818_length_252_cov_18.122137:1-252 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 51, Coverage: 5, minDepth: 5 [pilon] Confirmed 178 of 252 bases (70.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11818_length_252_cov_18.122137:1-252 [pilon] Processing NODE_1104_length_1439_cov_20.275417:1-1439 [pilon] NODE_8169_length_410_cov_8.629758:1-410 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 61, Coverage: 9, minDepth: 5 [pilon] Confirmed 321 of 410 bases (78.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8169_length_410_cov_8.629758:1-410 [pilon] Processing NODE_3961_length_719_cov_39.530100:1-719 [pilon] NODE_2536_length_960_cov_1.175209:1-960 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 36, Coverage: 4, minDepth: 5 [pilon] Confirmed 465 of 960 bases (48.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2536_length_960_cov_1.175209:1-960 [pilon] Processing NODE_12892_length_243_cov_24.147541:1-243 [pilon] NODE_8542_length_392_cov_8.959410:1-392 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 82, Coverage: 16, minDepth: 5 [pilon] Confirmed 294 of 392 bases (75.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8542_length_392_cov_8.959410:1-392 [pilon] Processing NODE_13692_length_243_cov_16.467213:1-243 [pilon] NODE_6783_length_484_cov_14.107438:1-484 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 111, Coverage: 15, minDepth: 5 [pilon] Confirmed 330 of 484 bases (68.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6783_length_484_cov_14.107438:1-484 [pilon] Processing NODE_12266_length_243_cov_34.163934:1-243 [pilon] NODE_11255_length_273_cov_20.717105:1-273 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 69, Coverage: 7, minDepth: 5 [pilon] Confirmed 195 of 273 bases (71.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11255_length_273_cov_20.717105:1-273 [pilon] Processing NODE_2167_length_1041_cov_24.938043:1-1041 [pilon] NODE_8053_length_415_cov_24.044218:1-415 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 180, Coverage: 9, minDepth: 5 [pilon] Confirmed 175 of 415 bases (42.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8053_length_415_cov_24.044218:1-415 [pilon] Processing NODE_4107_length_704_cov_12.248714:1-704 [pilon] NODE_4740_length_640_cov_3.541426:1-640 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 42, Coverage: 9, minDepth: 5 [pilon] Confirmed 407 of 640 bases (63.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4740_length_640_cov_3.541426:1-640 [pilon] Processing NODE_8456_length_396_cov_17.421818:1-396 [pilon] NODE_7526_length_442_cov_1.186916:1-442 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 147 of 442 bases (33.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7526_length_442_cov_1.186916:1-442 [pilon] Processing NODE_3830_length_737_cov_19.303571:1-737 [pilon] NODE_4220_length_691_cov_37.663158:1-691 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 488, Coverage: 68, minDepth: 17 [pilon] Confirmed 507 of 691 bases (73.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4220_length_691_cov_37.663158:1-691 [pilon] Processing NODE_2221_length_1029_cov_2.582599:1-1029 [pilon] NODE_10875_length_289_cov_11.434524:1-289 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 40, Coverage: 3, minDepth: 5 [pilon] Confirmed 52 of 289 bases (17.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10875_length_289_cov_11.434524:1-289 [pilon] Processing NODE_1801_length_1146_cov_24.231220:1-1146 [pilon] NODE_6224_length_522_cov_43.418953:1-522 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 378, Coverage: 43, minDepth: 11 [pilon] Confirmed 474 of 522 bases (90.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6224_length_522_cov_43.418953:1-522 [pilon] Processing NODE_10473_length_306_cov_9.367568:1-306 [pilon] NODE_12558_length_243_cov_28.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12558_length_243_cov_28.172131:1-243 [pilon] Processing NODE_9084_length_362_cov_45.431535:1-362 [pilon] NODE_774_length_1642_cov_2.249836:1-1642 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 95, Coverage: 6, minDepth: 5 [pilon] Confirmed 901 of 1642 bases (54.87%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_774_length_1642_cov_2.249836:1-1642 [pilon] Processing NODE_7026_length_470_cov_1.670487:1-470 [pilon] NODE_1137_length_1423_cov_23.403994:1-1423 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 691, Coverage: 51, minDepth: 13 [pilon] Confirmed 1223 of 1423 bases (85.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1137_length_1423_cov_23.403994:1-1423 [pilon] Processing NODE_6288_length_518_cov_48.584383:1-518 [pilon] NODE_14763_length_243_cov_8.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14763_length_243_cov_8.000000:1-243 [pilon] Processing NODE_122_length_2874_cov_2.451144:1-2874 [pilon] NODE_6725_length_489_cov_1.293478:1-489 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 489 bases (26.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6725_length_489_cov_1.293478:1-489 [pilon] Processing NODE_5149_length_606_cov_11.851546:1-606 [pilon] NODE_10888_length_288_cov_24.622754:1-288 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 75, Coverage: 7, minDepth: 5 [pilon] Confirmed 175 of 288 bases (60.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10888_length_288_cov_24.622754:1-288 [pilon] Processing NODE_13210_length_243_cov_20.983607:1-243 [pilon] NODE_8849_length_374_cov_56.687747:1-374 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 335, Coverage: 48, minDepth: 12 [pilon] Confirmed 332 of 374 bases (88.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8849_length_374_cov_56.687747:1-374 [pilon] Processing NODE_7968_length_420_cov_0.528428:1-420 [pilon] NODE_9663_length_339_cov_17.137615:1-339 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 75, Coverage: 7, minDepth: 5 [pilon] Confirmed 177 of 339 bases (52.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_8666_length_384_cov_15.866920:1-384 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 96, Coverage: 13, minDepth: 5 [pilon] Confirmed 253 of 384 bases (65.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8666_length_384_cov_15.866920:1-384 [pilon] Finished processing NODE_9663_length_339_cov_17.137615:1-339 [pilon] Processing NODE_3391_length_799_cov_3.387906:1-799 [pilon] Processing NODE_63_length_3388_cov_17.286807:1-3388 [pilon] NODE_13800_length_243_cov_15.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13800_length_243_cov_15.672131:1-243 [pilon] Processing NODE_6734_length_488_cov_1.648501:1-488 [pilon] NODE_5388_length_585_cov_7.831897:1-585 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 103, Coverage: 22, minDepth: 6 [pilon] Confirmed 365 of 585 bases (62.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5388_length_585_cov_7.831897:1-585 [pilon] Processing NODE_12054_length_245_cov_26.596774:1-245 [pilon] NODE_11788_length_253_cov_18.250000:1-253 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 53, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 253 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11788_length_253_cov_18.250000:1-253 [pilon] Processing NODE_3880_length_730_cov_25.704433:1-730 [pilon] NODE_1476_length_1272_cov_3.267593:1-1272 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 96, Coverage: 10, minDepth: 5 [pilon] Confirmed 1090 of 1272 bases (85.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1476_length_1272_cov_3.267593:1-1272 [pilon] Processing NODE_6228_length_522_cov_28.698254:1-522 [pilon] NODE_13692_length_243_cov_16.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13692_length_243_cov_16.467213:1-243 [pilon] Processing NODE_5615_length_569_cov_20.645089:1-569 [pilon] NODE_6190_length_525_cov_6.579208:1-525 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 59, Coverage: 6, minDepth: 5 [pilon] Confirmed 251 of 525 bases (47.81%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6190_length_525_cov_6.579208:1-525 [pilon] Processing NODE_1526_length_1250_cov_1.537644:1-1250 [pilon] NODE_3323_length_811_cov_16.889855:1-811 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 273, Coverage: 44, minDepth: 11 [pilon] Confirmed 601 of 811 bases (74.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3323_length_811_cov_16.889855:1-811 [pilon] Processing NODE_5035_length_616_cov_19.121212:1-616 [pilon] NODE_4107_length_704_cov_12.248714:1-704 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 192, Coverage: 14, minDepth: 5 [pilon] Confirmed 459 of 704 bases (65.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4107_length_704_cov_12.248714:1-704 [pilon] Processing NODE_4517_length_660_cov_10.747681:1-660 [pilon] NODE_12967_length_243_cov_23.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12967_length_243_cov_23.286885:1-243 [pilon] Processing NODE_334_length_2151_cov_1.993596:1-2151 [pilon] NODE_3961_length_719_cov_39.530100:1-719 log: [pilon] frags shovill.bam: coverage 83 [pilon] Total Reads: 557, Coverage: 83, minDepth: 21 [pilon] Confirmed 578 of 719 bases (80.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3961_length_719_cov_39.530100:1-719 [pilon] Processing NODE_10151_length_319_cov_19.833333:1-319 [pilon] NODE_1104_length_1439_cov_20.275417:1-1439 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 674, Coverage: 53, minDepth: 13 [pilon] Confirmed 1231 of 1439 bases (85.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1104_length_1439_cov_20.275417:1-1439 [pilon] Processing NODE_12631_length_243_cov_27.155738:1-243 [pilon] NODE_10473_length_306_cov_9.367568:1-306 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 38, Coverage: 2, minDepth: 5 [pilon] Confirmed 53 of 306 bases (17.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10473_length_306_cov_9.367568:1-306 [pilon] Processing NODE_13474_length_243_cov_18.647541:1-243 [pilon] NODE_12892_length_243_cov_24.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12892_length_243_cov_24.147541:1-243 [pilon] Processing NODE_4920_length_624_cov_40.763419:1-624 [pilon] NODE_12266_length_243_cov_34.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12266_length_243_cov_34.163934:1-243 [pilon] Processing NODE_4096_length_705_cov_28.125000:1-705 [pilon] NODE_2167_length_1041_cov_24.938043:1-1041 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 535, Coverage: 53, minDepth: 13 [pilon] Confirmed 927 of 1041 bases (89.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2167_length_1041_cov_24.938043:1-1041 [pilon] Processing NODE_5583_length_572_cov_2.332594:1-572 [pilon] NODE_8456_length_396_cov_17.421818:1-396 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 105, Coverage: 10, minDepth: 5 [pilon] Confirmed 298 of 396 bases (75.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8456_length_396_cov_17.421818:1-396 [pilon] Processing NODE_13584_length_243_cov_17.598361:1-243 [pilon] NODE_2221_length_1029_cov_2.582599:1-1029 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 67, Coverage: 8, minDepth: 5 [pilon] Confirmed 794 of 1029 bases (77.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2221_length_1029_cov_2.582599:1-1029 [pilon] Processing NODE_13446_length_243_cov_18.860656:1-243 [pilon] NODE_7968_length_420_cov_0.528428:1-420 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 420 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7968_length_420_cov_0.528428:1-420 [pilon] Processing NODE_4722_length_641_cov_25.850000:1-641 [pilon] NODE_7026_length_470_cov_1.670487:1-470 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 263 of 470 bases (55.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7026_length_470_cov_1.670487:1-470 [pilon] Processing NODE_5853_length_551_cov_17.493023:1-551 [pilon] NODE_1801_length_1146_cov_24.231220:1-1146 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 567, Coverage: 52, minDepth: 13 [pilon] Confirmed 909 of 1146 bases (79.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1801_length_1146_cov_24.231220:1-1146 [pilon] Processing NODE_8859_length_374_cov_17.861660:1-374 [pilon] NODE_9084_length_362_cov_45.431535:1-362 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 269, Coverage: 46, minDepth: 12 [pilon] Confirmed 329 of 362 bases (90.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9084_length_362_cov_45.431535:1-362 [pilon] Processing NODE_5760_length_559_cov_2.449772:1-559 [pilon] NODE_5149_length_606_cov_11.851546:1-606 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 129, Coverage: 24, minDepth: 6 [pilon] Confirmed 465 of 606 bases (76.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5149_length_606_cov_11.851546:1-606 [pilon] Processing NODE_7369_length_450_cov_12.711246:1-450 [pilon] NODE_3830_length_737_cov_19.303571:1-737 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 270, Coverage: 36, minDepth: 9 [pilon] Confirmed 537 of 737 bases (72.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3830_length_737_cov_19.303571:1-737 [pilon] Processing NODE_3069_length_859_cov_19.325203:1-859 [pilon] NODE_6288_length_518_cov_48.584383:1-518 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 442, Coverage: 67, minDepth: 17 [pilon] Confirmed 451 of 518 bases (87.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6288_length_518_cov_48.584383:1-518 [pilon] Processing NODE_10880_length_288_cov_52.449102:1-288 [pilon] NODE_13210_length_243_cov_20.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13210_length_243_cov_20.983607:1-243 [pilon] Processing NODE_3745_length_748_cov_12.499203:1-748 [pilon] NODE_122_length_2874_cov_2.451144:1-2874 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 219, Coverage: 10, minDepth: 5 [pilon] Confirmed 2551 of 2874 bases (88.76%) [pilon] Corrected 9 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_122_length_2874_cov_2.451144:1-2874 [pilon] Processing NODE_7739_length_430_cov_28.449838:1-430 [pilon] NODE_5615_length_569_cov_20.645089:1-569 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 239, Coverage: 18, minDepth: 5 [pilon] Confirmed 502 of 569 bases (88.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5615_length_569_cov_20.645089:1-569 [pilon] Processing NODE_12009_length_246_cov_16.232000:1-246 [pilon] NODE_3391_length_799_cov_3.387906:1-799 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 62, Coverage: 10, minDepth: 5 [pilon] Confirmed 633 of 799 bases (79.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3391_length_799_cov_3.387906:1-799 [pilon] Processing NODE_842_length_1603_cov_15.781377:1-1603 [pilon] NODE_4517_length_660_cov_10.747681:1-660 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 147, Coverage: 16, minDepth: 5 [pilon] Confirmed 584 of 660 bases (88.48%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4517_length_660_cov_10.747681:1-660 [pilon] Processing NODE_2161_length_1042_cov_18.861021:1-1042 [pilon] NODE_6734_length_488_cov_1.648501:1-488 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 51 of 488 bases (10.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6734_length_488_cov_1.648501:1-488 [pilon] Processing NODE_1964_length_1095_cov_1.978439:1-1095 [pilon] NODE_3880_length_730_cov_25.704433:1-730 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 375, Coverage: 47, minDepth: 12 [pilon] Confirmed 518 of 730 bases (70.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3880_length_730_cov_25.704433:1-730 [pilon] Processing NODE_8899_length_372_cov_14.294821:1-372 [pilon] NODE_13474_length_243_cov_18.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13474_length_243_cov_18.647541:1-243 [pilon] Processing NODE_8956_length_369_cov_6.798387:1-369 [pilon] NODE_12054_length_245_cov_26.596774:1-245 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 79, Coverage: 4, minDepth: 5 [pilon] Confirmed 122 of 245 bases (49.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12054_length_245_cov_26.596774:1-245 [pilon] Processing NODE_4670_length_646_cov_36.752381:1-646 [pilon] NODE_1526_length_1250_cov_1.537644:1-1250 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 55, Coverage: 6, minDepth: 5 [pilon] Confirmed 588 of 1250 bases (47.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1526_length_1250_cov_1.537644:1-1250 [pilon] Processing NODE_11220_length_275_cov_18.928571:1-275 [pilon] NODE_63_length_3388_cov_17.286807:1-3388 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 1329, Coverage: 51, minDepth: 13 [pilon] Confirmed 2919 of 3388 bases (86.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_63_length_3388_cov_17.286807:1-3388 [pilon] Processing NODE_5090_length_611_cov_4.228571:1-611 [pilon] NODE_6228_length_522_cov_28.698254:1-522 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 268, Coverage: 53, minDepth: 13 [pilon] Confirmed 470 of 522 bases (90.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6228_length_522_cov_28.698254:1-522 [pilon] Processing NODE_11551_length_262_cov_6.851064:1-262 [pilon] NODE_5035_length_616_cov_19.121212:1-616 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 234, Coverage: 34, minDepth: 9 [pilon] Confirmed 543 of 616 bases (88.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5035_length_616_cov_19.121212:1-616 [pilon] Processing NODE_13876_length_243_cov_15.081967:1-243 [pilon] NODE_334_length_2151_cov_1.993596:1-2151 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 114, Coverage: 7, minDepth: 5 [pilon] Confirmed 1350 of 2151 bases (62.76%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_334_length_2151_cov_1.993596:1-2151 [pilon] Processing NODE_13893_length_243_cov_14.967213:1-243 [pilon] NODE_4920_length_624_cov_40.763419:1-624 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 464, Coverage: 71, minDepth: 18 [pilon] Confirmed 549 of 624 bases (87.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4920_length_624_cov_40.763419:1-624 [pilon] Processing NODE_10188_length_318_cov_12.015228:1-318 [pilon] NODE_4722_length_641_cov_25.850000:1-641 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 292, Coverage: 39, minDepth: 10 [pilon] Confirmed 554 of 641 bases (86.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4722_length_641_cov_25.850000:1-641 [pilon] Processing NODE_12854_length_243_cov_24.475410:1-243 [pilon] NODE_5583_length_572_cov_2.332594:1-572 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 33, Coverage: 7, minDepth: 5 [pilon] Confirmed 379 of 572 bases (66.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5583_length_572_cov_2.332594:1-572 [pilon] Processing NODE_11550_length_262_cov_10.148936:1-262 [pilon] NODE_12631_length_243_cov_27.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12631_length_243_cov_27.155738:1-243 [pilon] Processing NODE_4557_length_657_cov_2.350746:1-657 [pilon] NODE_10151_length_319_cov_19.833333:1-319 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 89, Coverage: 7, minDepth: 5 [pilon] Confirmed 184 of 319 bases (57.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10151_length_319_cov_19.833333:1-319 [pilon] Processing NODE_4727_length_641_cov_12.203846:1-641 [pilon] NODE_13446_length_243_cov_18.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13446_length_243_cov_18.860656:1-243 [pilon] Processing NODE_5447_length_581_cov_1.023913:1-581 [pilon] NODE_4096_length_705_cov_28.125000:1-705 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 389, Coverage: 51, minDepth: 13 [pilon] Confirmed 581 of 705 bases (82.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4096_length_705_cov_28.125000:1-705 [pilon] Processing NODE_7971_length_419_cov_35.644295:1-419 [pilon] NODE_13584_length_243_cov_17.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13584_length_243_cov_17.598361:1-243 [pilon] Processing NODE_1168_length_1410_cov_21.790535:1-1410 [pilon] NODE_8859_length_374_cov_17.861660:1-374 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 136, Coverage: 9, minDepth: 5 [pilon] Confirmed 265 of 374 bases (70.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8859_length_374_cov_17.861660:1-374 [pilon] Processing NODE_14698_length_243_cov_8.581967:1-243 [pilon] NODE_3745_length_748_cov_12.499203:1-748 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 160, Coverage: 15, minDepth: 5 [pilon] Confirmed 527 of 748 bases (70.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3745_length_748_cov_12.499203:1-748 [pilon] Processing NODE_13239_length_243_cov_20.737705:1-243 [pilon] NODE_5853_length_551_cov_17.493023:1-551 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 188, Coverage: 21, minDepth: 5 [pilon] Confirmed 386 of 551 bases (70.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5853_length_551_cov_17.493023:1-551 [pilon] Processing NODE_2754_length_917_cov_19.520101:1-917 [pilon] NODE_10880_length_288_cov_52.449102:1-288 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 208, Coverage: 9, minDepth: 5 [pilon] Confirmed 152 of 288 bases (52.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10880_length_288_cov_52.449102:1-288 [pilon] Processing NODE_5722_length_561_cov_28.997727:1-561 [pilon] NODE_12009_length_246_cov_16.232000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 42, Coverage: 3, minDepth: 5 [pilon] Confirmed 83 of 246 bases (33.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12009_length_246_cov_16.232000:1-246 [pilon] Processing NODE_5790_length_556_cov_3.931034:1-556 [pilon] NODE_7739_length_430_cov_28.449838:1-430 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 215, Coverage: 22, minDepth: 6 [pilon] Confirmed 285 of 430 bases (66.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7739_length_430_cov_28.449838:1-430 [pilon] Processing NODE_10217_length_316_cov_13.435897:1-316 [pilon] NODE_5760_length_559_cov_2.449772:1-559 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 240 of 559 bases (42.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5760_length_559_cov_2.449772:1-559 [pilon] Processing NODE_14442_length_243_cov_10.721311:1-243 [pilon] NODE_3069_length_859_cov_19.325203:1-859 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 423, Coverage: 31, minDepth: 8 [pilon] Confirmed 787 of 859 bases (91.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3069_length_859_cov_19.325203:1-859 [pilon] Processing NODE_8038_length_416_cov_26.216949:1-416 [pilon] NODE_11551_length_262_cov_6.851064:1-262 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 25, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 262 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11551_length_262_cov_6.851064:1-262 [pilon] Processing NODE_151_length_2719_cov_2.652040:1-2719 [pilon] NODE_5090_length_611_cov_4.228571:1-611 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 64, Coverage: 13, minDepth: 5 [pilon] Confirmed 409 of 611 bases (66.94%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5090_length_611_cov_4.228571:1-611 [pilon] Processing NODE_14997_length_243_cov_5.434426:1-243 [pilon] NODE_4727_length_641_cov_12.203846:1-641 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 174, Coverage: 23, minDepth: 6 [pilon] Confirmed 556 of 641 bases (86.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4727_length_641_cov_12.203846:1-641 [pilon] Processing NODE_9418_length_349_cov_23.210526:1-349 [pilon] NODE_7369_length_450_cov_12.711246:1-450 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 103, Coverage: 14, minDepth: 5 [pilon] Confirmed 257 of 450 bases (57.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7369_length_450_cov_12.711246:1-450 [pilon] Processing NODE_11129_length_279_cov_9.373418:1-279 [pilon] NODE_2161_length_1042_cov_18.861021:1-1042 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 396, Coverage: 39, minDepth: 10 [pilon] Confirmed 897 of 1042 bases (86.08%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2161_length_1042_cov_18.861021:1-1042 [pilon] Processing NODE_4186_length_695_cov_13.250871:1-695 [pilon] NODE_4670_length_646_cov_36.752381:1-646 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 437, Coverage: 47, minDepth: 12 [pilon] Confirmed 492 of 646 bases (76.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4670_length_646_cov_36.752381:1-646 [pilon] Processing NODE_13613_length_243_cov_17.377049:1-243 [pilon] NODE_4557_length_657_cov_2.350746:1-657 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 39, Coverage: 8, minDepth: 5 [pilon] Confirmed 425 of 657 bases (64.69%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4557_length_657_cov_2.350746:1-657 [pilon] Processing NODE_5218_length_600_cov_13.225470:1-600 [pilon] NODE_11550_length_262_cov_10.148936:1-262 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 35, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 262 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11550_length_262_cov_10.148936:1-262 [pilon] Processing NODE_12290_length_243_cov_33.459016:1-243 [pilon] NODE_8899_length_372_cov_14.294821:1-372 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 96, Coverage: 5, minDepth: 5 [pilon] Confirmed 176 of 372 bases (47.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8899_length_372_cov_14.294821:1-372 [pilon] Processing NODE_12022_length_246_cov_11.888000:1-246 [pilon] NODE_842_length_1603_cov_15.781377:1-1603 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 559, Coverage: 29, minDepth: 7 [pilon] Confirmed 1358 of 1603 bases (84.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_842_length_1603_cov_15.781377:1-1603 [pilon] Processing NODE_8660_length_384_cov_19.958175:1-384 [pilon] NODE_8956_length_369_cov_6.798387:1-369 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 41, Coverage: 3, minDepth: 5 [pilon] Confirmed 101 of 369 bases (27.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8956_length_369_cov_6.798387:1-369 [pilon] Processing NODE_11541_length_262_cov_21.794326:1-262 [pilon] NODE_13876_length_243_cov_15.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13876_length_243_cov_15.081967:1-243 [pilon] Processing NODE_11507_length_263_cov_38.704225:1-263 [pilon] NODE_14698_length_243_cov_8.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14698_length_243_cov_8.581967:1-243 [pilon] Processing NODE_4312_length_679_cov_36.541219:1-679 [pilon] NODE_7971_length_419_cov_35.644295:1-419 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 237, Coverage: 48, minDepth: 12 [pilon] Confirmed 352 of 419 bases (84.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7971_length_419_cov_35.644295:1-419 [pilon] Processing NODE_604_length_1806_cov_35.874777:1-1806 [pilon] NODE_1964_length_1095_cov_1.978439:1-1095 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 52, Coverage: 6, minDepth: 5 [pilon] Confirmed 858 of 1095 bases (78.36%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1964_length_1095_cov_1.978439:1-1095 [pilon] Processing NODE_1690_length_1185_cov_29.837406:1-1185 [pilon] NODE_13893_length_243_cov_14.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13893_length_243_cov_14.967213:1-243 [pilon] Processing NODE_1214_length_1384_cov_36.432304:1-1384 [pilon] NODE_13239_length_243_cov_20.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13239_length_243_cov_20.737705:1-243 [pilon] Processing NODE_6043_length_537_cov_8.622596:1-537 [pilon] NODE_11220_length_275_cov_18.928571:1-275 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 73, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 275 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11220_length_275_cov_18.928571:1-275 [pilon] Processing NODE_13186_length_243_cov_21.221311:1-243 [pilon] NODE_5722_length_561_cov_28.997727:1-561 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 263, Coverage: 36, minDepth: 9 [pilon] Confirmed 417 of 561 bases (74.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5722_length_561_cov_28.997727:1-561 [pilon] Processing NODE_2078_length_1065_cov_3.424788:1-1065 [pilon] NODE_5447_length_581_cov_1.023913:1-581 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 274 of 581 bases (47.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5447_length_581_cov_1.023913:1-581 [pilon] Processing NODE_3729_length_751_cov_1.187302:1-751 [pilon] NODE_10188_length_318_cov_12.015228:1-318 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 52, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 318 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10188_length_318_cov_12.015228:1-318 [pilon] Processing NODE_10470_length_306_cov_11.448649:1-306 [pilon] NODE_12854_length_243_cov_24.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12854_length_243_cov_24.475410:1-243 [pilon] Processing NODE_6642_length_495_cov_0.598930:1-495 [pilon] NODE_1168_length_1410_cov_21.790535:1-1410 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 640, Coverage: 33, minDepth: 8 [pilon] Confirmed 1083 of 1410 bases (76.81%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1168_length_1410_cov_21.790535:1-1410 [pilon] Processing NODE_1852_length_1128_cov_1.691162:1-1128 [pilon] NODE_2754_length_917_cov_19.520101:1-917 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 359, Coverage: 33, minDepth: 8 [pilon] Confirmed 732 of 917 bases (79.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2754_length_917_cov_19.520101:1-917 [pilon] Processing NODE_8480_length_395_cov_16.251825:1-395 [pilon] NODE_14442_length_243_cov_10.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14442_length_243_cov_10.721311:1-243 [pilon] Processing NODE_10759_length_295_cov_10.293103:1-295 [pilon] NODE_5790_length_556_cov_3.931034:1-556 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 51, Coverage: 12, minDepth: 5 [pilon] Confirmed 440 of 556 bases (79.14%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5790_length_556_cov_3.931034:1-556 [pilon] Processing NODE_6471_length_505_cov_46.578125:1-505 [pilon] NODE_8038_length_416_cov_26.216949:1-416 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 165, Coverage: 28, minDepth: 7 [pilon] Confirmed 344 of 416 bases (82.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8038_length_416_cov_26.216949:1-416 [pilon] Processing NODE_15006_length_243_cov_5.344262:1-243 [pilon] NODE_10217_length_316_cov_13.435897:1-316 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 45, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 316 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10217_length_316_cov_13.435897:1-316 [pilon] Processing NODE_8969_length_368_cov_16.093117:1-368 [pilon] NODE_9418_length_349_cov_23.210526:1-349 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 123, Coverage: 19, minDepth: 5 [pilon] Confirmed 303 of 349 bases (86.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9418_length_349_cov_23.210526:1-349 [pilon] Processing NODE_10905_length_288_cov_18.227545:1-288 [pilon] NODE_12022_length_246_cov_11.888000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 34, Coverage: 3, minDepth: 5 [pilon] Confirmed 32 of 246 bases (13.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12022_length_246_cov_11.888000:1-246 [pilon] Processing NODE_14556_length_243_cov_9.860656:1-243 [pilon] NODE_11129_length_279_cov_9.373418:1-279 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 30, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11129_length_279_cov_9.373418:1-279 [pilon] Processing NODE_14110_length_243_cov_13.401639:1-243 [pilon] NODE_2078_length_1065_cov_3.424788:1-1065 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 83, Coverage: 10, minDepth: 5 [pilon] Confirmed 910 of 1065 bases (85.45%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2078_length_1065_cov_3.424788:1-1065 [pilon] Processing NODE_11395_length_267_cov_21.869863:1-267 [pilon] NODE_4186_length_695_cov_13.250871:1-695 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 217, Coverage: 11, minDepth: 5 [pilon] Confirmed 381 of 695 bases (54.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4186_length_695_cov_13.250871:1-695 [pilon] Processing NODE_14653_length_243_cov_8.975410:1-243 [pilon] NODE_5218_length_600_cov_13.225470:1-600 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 153, Coverage: 23, minDepth: 6 [pilon] Confirmed 476 of 600 bases (79.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5218_length_600_cov_13.225470:1-600 [pilon] Processing NODE_13801_length_243_cov_15.672131:1-243 [pilon] NODE_1852_length_1128_cov_1.691162:1-1128 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 49, Coverage: 6, minDepth: 5 [pilon] Confirmed 650 of 1128 bases (57.62%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1852_length_1128_cov_1.691162:1-1128 [pilon] Processing NODE_7936_length_421_cov_0.753333:1-421 [pilon] NODE_8660_length_384_cov_19.958175:1-384 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 111, Coverage: 9, minDepth: 5 [pilon] Confirmed 189 of 384 bases (49.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8660_length_384_cov_19.958175:1-384 [pilon] Processing NODE_12976_length_243_cov_23.213115:1-243 [pilon] NODE_14997_length_243_cov_5.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14997_length_243_cov_5.434426:1-243 [pilon] Processing NODE_14244_length_243_cov_12.278689:1-243 [pilon] NODE_151_length_2719_cov_2.652040:1-2719 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 201, Coverage: 9, minDepth: 5 [pilon] Confirmed 2191 of 2719 bases (80.58%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_151_length_2719_cov_2.652040:1-2719 [pilon] Processing NODE_3462_length_790_cov_7.556054:1-790 [pilon] NODE_604_length_1806_cov_35.874777:1-1806 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 1432, Coverage: 91, minDepth: 23 [pilon] Confirmed 1637 of 1806 bases (90.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_604_length_1806_cov_35.874777:1-1806 [pilon] Processing NODE_5189_length_602_cov_54.723493:1-602 [pilon] NODE_12290_length_243_cov_33.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12290_length_243_cov_33.459016:1-243 [pilon] Processing NODE_9160_length_359_cov_20.957983:1-359 [pilon] NODE_13613_length_243_cov_17.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13613_length_243_cov_17.377049:1-243 [pilon] Processing NODE_923_length_1543_cov_39.791842:1-1543 [pilon] NODE_8480_length_395_cov_16.251825:1-395 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 101, Coverage: 18, minDepth: 5 [pilon] Confirmed 311 of 395 bases (78.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8480_length_395_cov_16.251825:1-395 [pilon] Processing NODE_13398_length_243_cov_19.327869:1-243 [pilon] NODE_11541_length_262_cov_21.794326:1-262 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 59, Coverage: 8, minDepth: 5 [pilon] Confirmed 197 of 262 bases (75.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11541_length_262_cov_21.794326:1-262 [pilon] Processing NODE_139_length_2786_cov_12.425516:1-2786 [pilon] NODE_6642_length_495_cov_0.598930:1-495 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 7, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 495 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6642_length_495_cov_0.598930:1-495 [pilon] Processing NODE_4714_length_642_cov_17.635317:1-642 [pilon] NODE_6043_length_537_cov_8.622596:1-537 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 91, Coverage: 4, minDepth: 5 [pilon] Confirmed 156 of 537 bases (29.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6043_length_537_cov_8.622596:1-537 [pilon] Processing NODE_13344_length_243_cov_19.893443:1-243 [pilon] NODE_3729_length_751_cov_1.187302:1-751 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 36, Coverage: 6, minDepth: 5 [pilon] Confirmed 415 of 751 bases (55.26%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3729_length_751_cov_1.187302:1-751 [pilon] Processing NODE_7605_length_437_cov_24.968354:1-437 [pilon] NODE_10470_length_306_cov_11.448649:1-306 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 43, Coverage: 2, minDepth: 5 [pilon] Confirmed 10 of 306 bases (3.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10470_length_306_cov_11.448649:1-306 [pilon] Processing NODE_1180_length_1407_cov_10.382582:1-1407 [pilon] NODE_4312_length_679_cov_36.541219:1-679 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 460, Coverage: 68, minDepth: 17 [pilon] Confirmed 543 of 679 bases (79.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4312_length_679_cov_36.541219:1-679 [pilon] Processing NODE_5865_length_550_cov_21.545455:1-550 [pilon] NODE_11507_length_263_cov_38.704225:1-263 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 127, Coverage: 8, minDepth: 5 [pilon] Confirmed 196 of 263 bases (74.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11507_length_263_cov_38.704225:1-263 [pilon] Processing NODE_14196_length_243_cov_12.647541:1-243 [pilon] NODE_1214_length_1384_cov_36.432304:1-1384 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 1041, Coverage: 84, minDepth: 21 [pilon] Confirmed 1154 of 1384 bases (83.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1214_length_1384_cov_36.432304:1-1384 [pilon] Processing NODE_7588_length_438_cov_21.454259:1-438 [pilon] NODE_13186_length_243_cov_21.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13186_length_243_cov_21.221311:1-243 [pilon] Processing NODE_15160_length_184_cov_62.809524:1-184 [pilon] NODE_10759_length_295_cov_10.293103:1-295 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 26, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 295 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10759_length_295_cov_10.293103:1-295 [pilon] Processing NODE_6227_length_522_cov_31.182045:1-522 [pilon] NODE_1690_length_1185_cov_29.837406:1-1185 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 789, Coverage: 43, minDepth: 11 [pilon] Confirmed 903 of 1185 bases (76.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1690_length_1185_cov_29.837406:1-1185 [pilon] Processing NODE_7752_length_429_cov_24.230519:1-429 [pilon] NODE_15006_length_243_cov_5.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15006_length_243_cov_5.344262:1-243 [pilon] Processing NODE_497_length_1912_cov_21.874930:1-1912 [pilon] NODE_6471_length_505_cov_46.578125:1-505 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 441, Coverage: 58, minDepth: 15 [pilon] Confirmed 391 of 505 bases (77.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6471_length_505_cov_46.578125:1-505 [pilon] Processing NODE_10711_length_297_cov_19.767045:1-297 [pilon] NODE_13801_length_243_cov_15.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13801_length_243_cov_15.672131:1-243 [pilon] Processing NODE_6199_length_524_cov_17.205955:1-524 [pilon] NODE_14556_length_243_cov_9.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14556_length_243_cov_9.860656:1-243 [pilon] Processing NODE_1468_length_1275_cov_12.193241:1-1275 [pilon] NODE_14653_length_243_cov_8.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14653_length_243_cov_8.975410:1-243 [pilon] Processing NODE_12262_length_243_cov_34.254098:1-243 [pilon] NODE_10905_length_288_cov_18.227545:1-288 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 63, Coverage: 5, minDepth: 5 [pilon] Confirmed 186 of 288 bases (64.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10905_length_288_cov_18.227545:1-288 [pilon] Processing NODE_12459_length_243_cov_29.754098:1-243 [pilon] NODE_7605_length_437_cov_24.968354:1-437 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 174, Coverage: 22, minDepth: 6 [pilon] Confirmed 340 of 437 bases (77.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7605_length_437_cov_24.968354:1-437 [pilon] Processing NODE_6885_length_478_cov_52.977591:1-478 [pilon] NODE_1180_length_1407_cov_10.382582:1-1407 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 346, Coverage: 28, minDepth: 7 [pilon] Confirmed 1184 of 1407 bases (84.15%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1180_length_1407_cov_10.382582:1-1407 [pilon] Processing NODE_59_length_3455_cov_17.742352:1-3455 [pilon] NODE_8969_length_368_cov_16.093117:1-368 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 93, Coverage: 8, minDepth: 5 [pilon] Confirmed 225 of 368 bases (61.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8969_length_368_cov_16.093117:1-368 [pilon] Processing NODE_12897_length_243_cov_24.114754:1-243 [pilon] NODE_14110_length_243_cov_13.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14110_length_243_cov_13.401639:1-243 [pilon] Processing NODE_3189_length_834_cov_3.349229:1-834 [pilon] NODE_11395_length_267_cov_21.869863:1-267 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 72, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11395_length_267_cov_21.869863:1-267 [pilon] Processing NODE_8547_length_391_cov_25.062963:1-391 [pilon] NODE_3462_length_790_cov_7.556054:1-790 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 146, Coverage: 13, minDepth: 5 [pilon] Confirmed 513 of 790 bases (64.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3462_length_790_cov_7.556054:1-790 [pilon] Processing NODE_3658_length_760_cov_25.042254:1-760 [pilon] NODE_14244_length_243_cov_12.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14244_length_243_cov_12.278689:1-243 [pilon] Processing NODE_7338_length_451_cov_25.518182:1-451 [pilon] NODE_7936_length_421_cov_0.753333:1-421 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 421 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7936_length_421_cov_0.753333:1-421 [pilon] Processing NODE_11132_length_279_cov_8.607595:1-279 [pilon] NODE_12976_length_243_cov_23.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12976_length_243_cov_23.213115:1-243 [pilon] Processing NODE_8760_length_379_cov_38.519380:1-379 [pilon] NODE_5189_length_602_cov_54.723493:1-602 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 597, Coverage: 90, minDepth: 23 [pilon] Confirmed 524 of 602 bases (87.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5189_length_602_cov_54.723493:1-602 [pilon] Processing NODE_8763_length_379_cov_12.717054:1-379 [pilon] NODE_13344_length_243_cov_19.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13344_length_243_cov_19.893443:1-243 [pilon] Processing NODE_9921_length_329_cov_16.716346:1-329 [pilon] NODE_13398_length_243_cov_19.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13398_length_243_cov_19.327869:1-243 [pilon] Processing NODE_1140_length_1423_cov_1.523041:1-1423 [pilon] NODE_4714_length_642_cov_17.635317:1-642 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 210, Coverage: 12, minDepth: 5 [pilon] Confirmed 391 of 642 bases (60.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4714_length_642_cov_17.635317:1-642 [pilon] Processing NODE_11118_length_279_cov_15.107595:1-279 [pilon] NODE_5865_length_550_cov_21.545455:1-550 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 207, Coverage: 33, minDepth: 8 [pilon] Confirmed 421 of 550 bases (76.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5865_length_550_cov_21.545455:1-550 [pilon] Processing NODE_11053_length_281_cov_37.618750:1-281 [pilon] NODE_9160_length_359_cov_20.957983:1-359 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 107, Coverage: 2, minDepth: 5 [pilon] Confirmed 99 of 359 bases (27.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9160_length_359_cov_20.957983:1-359 [pilon] Processing NODE_2586_length_948_cov_19.818622:1-948 [pilon] NODE_139_length_2786_cov_12.425516:1-2786 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 821, Coverage: 36, minDepth: 9 [pilon] Confirmed 2232 of 2786 bases (80.11%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_139_length_2786_cov_12.425516:1-2786 [pilon] Processing NODE_6916_length_477_cov_1.199438:1-477 [pilon] NODE_923_length_1543_cov_39.791842:1-1543 log: [pilon] frags shovill.bam: coverage 105 [pilon] Total Reads: 1381, Coverage: 105, minDepth: 26 [pilon] Confirmed 1295 of 1543 bases (83.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_923_length_1543_cov_39.791842:1-1543 [pilon] Processing NODE_1678_length_1190_cov_2.769878:1-1190 [pilon] NODE_7588_length_438_cov_21.454259:1-438 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 186, Coverage: 8, minDepth: 5 [pilon] Confirmed 159 of 438 bases (36.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7588_length_438_cov_21.454259:1-438 [pilon] Processing NODE_665_length_1733_cov_35.655707:1-1733 [pilon] NODE_14196_length_243_cov_12.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14196_length_243_cov_12.647541:1-243 [pilon] Processing NODE_12405_length_243_cov_30.819672:1-243 [pilon] NODE_15160_length_184_cov_62.809524:1-184 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 98, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 184 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15160_length_184_cov_62.809524:1-184 [pilon] Processing NODE_9165_length_359_cov_12.415966:1-359 [pilon] NODE_6199_length_524_cov_17.205955:1-524 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 173, Coverage: 23, minDepth: 6 [pilon] Confirmed 361 of 524 bases (68.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6199_length_524_cov_17.205955:1-524 [pilon] Processing NODE_4074_length_708_cov_13.410562:1-708 [pilon] NODE_6227_length_522_cov_31.182045:1-522 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 327, Coverage: 19, minDepth: 5 [pilon] Confirmed 340 of 522 bases (65.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6227_length_522_cov_31.182045:1-522 [pilon] Processing NODE_11686_length_257_cov_9.257353:1-257 [pilon] NODE_7752_length_429_cov_24.230519:1-429 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 158, Coverage: 14, minDepth: 5 [pilon] Confirmed 260 of 429 bases (60.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7752_length_429_cov_24.230519:1-429 [pilon] Processing NODE_12311_length_243_cov_32.950820:1-243 [pilon] NODE_12262_length_243_cov_34.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12262_length_243_cov_34.254098:1-243 [pilon] Processing NODE_3135_length_845_cov_11.435083:1-845 [pilon] NODE_6885_length_478_cov_52.977591:1-478 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 453, Coverage: 77, minDepth: 19 [pilon] Confirmed 404 of 478 bases (84.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6885_length_478_cov_52.977591:1-478 [pilon] Processing NODE_7639_length_435_cov_60.420382:1-435 [pilon] NODE_10711_length_297_cov_19.767045:1-297 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 89, Coverage: 15, minDepth: 5 [pilon] Confirmed 245 of 297 bases (82.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10711_length_297_cov_19.767045:1-297 [pilon] Processing NODE_3849_length_734_cov_24.553018:1-734 [pilon] NODE_497_length_1912_cov_21.874930:1-1912 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 900, Coverage: 57, minDepth: 14 [pilon] Confirmed 1538 of 1912 bases (80.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_497_length_1912_cov_21.874930:1-1912 [pilon] Processing NODE_6915_length_477_cov_2.334270:1-477 [pilon] NODE_12897_length_243_cov_24.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12897_length_243_cov_24.114754:1-243 [pilon] Processing NODE_7384_length_449_cov_8.039634:1-449 [pilon] NODE_1468_length_1275_cov_12.193241:1-1275 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 336, Coverage: 28, minDepth: 7 [pilon] Confirmed 1098 of 1275 bases (86.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1468_length_1275_cov_12.193241:1-1275 [pilon] Processing NODE_13522_length_243_cov_18.147541:1-243 [pilon] NODE_59_length_3455_cov_17.742352:1-3455 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 1398, Coverage: 39, minDepth: 10 [pilon] Confirmed 3145 of 3455 bases (91.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_59_length_3455_cov_17.742352:1-3455 [pilon] Processing NODE_4618_length_651_cov_9.292453:1-651 [pilon] NODE_12459_length_243_cov_29.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12459_length_243_cov_29.754098:1-243 [pilon] Processing NODE_2156_length_1044_cov_1.256771:1-1044 [pilon] NODE_3189_length_834_cov_3.349229:1-834 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 61, Coverage: 9, minDepth: 5 [pilon] Confirmed 533 of 834 bases (63.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3189_length_834_cov_3.349229:1-834 [pilon] Processing NODE_14413_length_243_cov_10.959016:1-243 [pilon] NODE_7338_length_451_cov_25.518182:1-451 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 193, Coverage: 23, minDepth: 6 [pilon] Confirmed 332 of 451 bases (73.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7338_length_451_cov_25.518182:1-451 [pilon] Processing NODE_4838_length_631_cov_31.092157:1-631 [pilon] NODE_8547_length_391_cov_25.062963:1-391 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 139, Coverage: 13, minDepth: 5 [pilon] Confirmed 232 of 391 bases (59.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8547_length_391_cov_25.062963:1-391 [pilon] Processing NODE_7301_length_454_cov_2.786787:1-454 [pilon] NODE_4074_length_708_cov_13.410562:1-708 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 175, Coverage: 20, minDepth: 5 [pilon] Confirmed 591 of 708 bases (83.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4074_length_708_cov_13.410562:1-708 [pilon] Processing NODE_7631_length_436_cov_2.050794:1-436 [pilon] NODE_8760_length_379_cov_38.519380:1-379 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 236, Coverage: 50, minDepth: 13 [pilon] Confirmed 323 of 379 bases (85.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8760_length_379_cov_38.519380:1-379 [pilon] Processing NODE_2564_length_954_cov_1.686675:1-954 [pilon] NODE_11132_length_279_cov_8.607595:1-279 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 21, Coverage: 2, minDepth: 5 [pilon] Confirmed 90 of 279 bases (32.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11132_length_279_cov_8.607595:1-279 [pilon] Processing NODE_2391_length_991_cov_26.452874:1-991 [pilon] NODE_1140_length_1423_cov_1.523041:1-1423 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 60, Coverage: 5, minDepth: 5 [pilon] Confirmed 534 of 1423 bases (37.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1140_length_1423_cov_1.523041:1-1423 [pilon] Processing NODE_2729_length_923_cov_1.058603:1-923 [pilon] NODE_3658_length_760_cov_25.042254:1-760 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 418, Coverage: 39, minDepth: 10 [pilon] Confirmed 732 of 760 bases (96.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3658_length_760_cov_25.042254:1-760 [pilon] Processing NODE_638_length_1765_cov_4.381995:1-1765 [pilon] NODE_6916_length_477_cov_1.199438:1-477 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 261 of 477 bases (54.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6916_length_477_cov_1.199438:1-477 [pilon] Processing NODE_11287_length_273_cov_8.052632:1-273 [pilon] NODE_8763_length_379_cov_12.717054:1-379 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 85, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 379 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8763_length_379_cov_12.717054:1-379 [pilon] Processing NODE_5432_length_582_cov_2.323210:1-582 [pilon] NODE_11053_length_281_cov_37.618750:1-281 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 144, Coverage: 9, minDepth: 5 [pilon] Confirmed 215 of 281 bases (76.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11053_length_281_cov_37.618750:1-281 [pilon] Processing NODE_6153_length_528_cov_8.945946:1-528 [pilon] NODE_9921_length_329_cov_16.716346:1-329 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 69, Coverage: 2, minDepth: 5 [pilon] Confirmed 108 of 329 bases (32.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9921_length_329_cov_16.716346:1-329 [pilon] Processing NODE_12860_length_243_cov_24.434426:1-243 [pilon] NODE_11118_length_279_cov_15.107595:1-279 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 53, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11118_length_279_cov_15.107595:1-279 [pilon] Processing NODE_14039_length_243_cov_13.909836:1-243 [pilon] NODE_1678_length_1190_cov_2.769878:1-1190 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 916 of 1190 bases (76.97%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1678_length_1190_cov_2.769878:1-1190 [pilon] Processing NODE_6607_length_497_cov_2.760638:1-497 [pilon] NODE_3135_length_845_cov_11.435083:1-845 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 246, Coverage: 22, minDepth: 6 [pilon] Confirmed 588 of 845 bases (69.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3135_length_845_cov_11.435083:1-845 [pilon] Processing NODE_6739_length_487_cov_48.390710:1-487 [pilon] NODE_2586_length_948_cov_19.818622:1-948 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 382, Coverage: 29, minDepth: 7 [pilon] Confirmed 773 of 948 bases (81.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2586_length_948_cov_19.818622:1-948 [pilon] Processing NODE_9221_length_357_cov_13.444915:1-357 [pilon] NODE_7639_length_435_cov_60.420382:1-435 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 420, Coverage: 76, minDepth: 19 [pilon] Confirmed 377 of 435 bases (86.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7639_length_435_cov_60.420382:1-435 [pilon] Processing NODE_7616_length_437_cov_0.588608:1-437 [pilon] NODE_12405_length_243_cov_30.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12405_length_243_cov_30.819672:1-243 [pilon] Processing NODE_14200_length_243_cov_12.590164:1-243 [pilon] NODE_9165_length_359_cov_12.415966:1-359 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 45, Coverage: 4, minDepth: 5 [pilon] Confirmed 163 of 359 bases (45.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9165_length_359_cov_12.415966:1-359 [pilon] Processing NODE_9754_length_336_cov_14.744186:1-336 [pilon] NODE_665_length_1733_cov_35.655707:1-1733 log: [pilon] frags shovill.bam: coverage 95 [pilon] Total Reads: 1398, Coverage: 95, minDepth: 24 [pilon] Confirmed 1449 of 1733 bases (83.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_665_length_1733_cov_35.655707:1-1733 [pilon] Processing NODE_8088_length_414_cov_12.245734:1-414 [pilon] NODE_7384_length_449_cov_8.039634:1-449 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 53, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 449 bases (28.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7384_length_449_cov_8.039634:1-449 [pilon] Processing NODE_11765_length_255_cov_12.059701:1-255 [pilon] NODE_11686_length_257_cov_9.257353:1-257 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 20, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 257 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11686_length_257_cov_9.257353:1-257 [pilon] Processing NODE_11803_length_252_cov_28.190840:1-252 [pilon] NODE_12311_length_243_cov_32.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12311_length_243_cov_32.950820:1-243 [pilon] Processing NODE_2108_length_1057_cov_2.736111:1-1057 [pilon] NODE_6915_length_477_cov_2.334270:1-477 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 198 of 477 bases (41.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6915_length_477_cov_2.334270:1-477 [pilon] Processing NODE_2684_length_932_cov_11.199753:1-932 [pilon] NODE_13522_length_243_cov_18.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13522_length_243_cov_18.147541:1-243 [pilon] Processing NODE_9443_length_348_cov_18.431718:1-348 [pilon] NODE_3849_length_734_cov_24.553018:1-734 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 343, Coverage: 39, minDepth: 10 [pilon] Confirmed 679 of 734 bases (92.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3849_length_734_cov_24.553018:1-734 [pilon] Processing NODE_12098_length_244_cov_9.268293:1-244 [pilon] NODE_4618_length_651_cov_9.292453:1-651 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 117, Coverage: 16, minDepth: 5 [pilon] Confirmed 445 of 651 bases (68.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4618_length_651_cov_9.292453:1-651 [pilon] Processing NODE_8949_length_369_cov_12.213710:1-369 [pilon] NODE_7631_length_436_cov_2.050794:1-436 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 23, Coverage: 7, minDepth: 5 [pilon] Confirmed 278 of 436 bases (63.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7631_length_436_cov_2.050794:1-436 [pilon] Processing NODE_10066_length_323_cov_8.450495:1-323 [pilon] NODE_2156_length_1044_cov_1.256771:1-1044 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 38, Coverage: 5, minDepth: 5 [pilon] Confirmed 526 of 1044 bases (50.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2156_length_1044_cov_1.256771:1-1044 [pilon] Processing NODE_2615_length_943_cov_1.259124:1-943 [pilon] NODE_7616_length_437_cov_0.588608:1-437 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 437 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7616_length_437_cov_0.588608:1-437 [pilon] Processing NODE_2740_length_920_cov_10.478098:1-920 [pilon] NODE_6739_length_487_cov_48.390710:1-487 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 364, Coverage: 36, minDepth: 9 [pilon] Confirmed 286 of 487 bases (58.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6739_length_487_cov_48.390710:1-487 [pilon] Processing NODE_11233_length_274_cov_12.568627:1-274 [pilon] NODE_14413_length_243_cov_10.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14413_length_243_cov_10.959016:1-243 [pilon] Processing NODE_8026_length_417_cov_17.895270:1-417 [pilon] NODE_6153_length_528_cov_8.945946:1-528 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 87, Coverage: 13, minDepth: 5 [pilon] Confirmed 363 of 528 bases (68.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6153_length_528_cov_8.945946:1-528 [pilon] Processing NODE_1199_length_1398_cov_42.302271:1-1398 [pilon] NODE_4838_length_631_cov_31.092157:1-631 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 337, Coverage: 46, minDepth: 12 [pilon] Confirmed 558 of 631 bases (88.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4838_length_631_cov_31.092157:1-631 [pilon] Processing NODE_12472_length_243_cov_29.606557:1-243 [pilon] NODE_11765_length_255_cov_12.059701:1-255 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11765_length_255_cov_12.059701:1-255 [pilon] Processing NODE_2736_length_921_cov_4.771250:1-921 [pilon] NODE_7301_length_454_cov_2.786787:1-454 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 22, Coverage: 6, minDepth: 5 [pilon] Confirmed 260 of 454 bases (57.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7301_length_454_cov_2.786787:1-454 [pilon] Processing NODE_9864_length_331_cov_18.352381:1-331 [pilon] NODE_2564_length_954_cov_1.686675:1-954 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 43, Coverage: 5, minDepth: 5 [pilon] Confirmed 487 of 954 bases (51.05%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2564_length_954_cov_1.686675:1-954 [pilon] Processing NODE_13940_length_243_cov_14.581967:1-243 [pilon] NODE_5432_length_582_cov_2.323210:1-582 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 303 of 582 bases (52.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5432_length_582_cov_2.323210:1-582 [pilon] Processing NODE_4136_length_700_cov_2.620035:1-700 [pilon] NODE_11287_length_273_cov_8.052632:1-273 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11287_length_273_cov_8.052632:1-273 [pilon] Processing NODE_12914_length_243_cov_23.942623:1-243 [pilon] NODE_2391_length_991_cov_26.452874:1-991 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 576, Coverage: 38, minDepth: 10 [pilon] Confirmed 817 of 991 bases (82.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2391_length_991_cov_26.452874:1-991 [pilon] Processing NODE_14079_length_243_cov_13.639344:1-243 [pilon] NODE_14039_length_243_cov_13.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14039_length_243_cov_13.909836:1-243 [pilon] Processing NODE_13496_length_243_cov_18.377049:1-243 [pilon] NODE_2729_length_923_cov_1.058603:1-923 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 31, Coverage: 4, minDepth: 5 [pilon] Confirmed 483 of 923 bases (52.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2729_length_923_cov_1.058603:1-923 [pilon] Processing NODE_3229_length_829_cov_4.172316:1-829 [pilon] NODE_12860_length_243_cov_24.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12860_length_243_cov_24.434426:1-243 [pilon] Processing NODE_10710_length_297_cov_20.625000:1-297 [pilon] NODE_638_length_1765_cov_4.381995:1-1765 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 183, Coverage: 13, minDepth: 5 [pilon] Confirmed 1489 of 1765 bases (84.36%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_638_length_1765_cov_4.381995:1-1765 [pilon] Processing NODE_1839_length_1132_cov_42.265084:1-1132 [pilon] NODE_6607_length_497_cov_2.760638:1-497 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 253 of 497 bases (50.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6607_length_497_cov_2.760638:1-497 [pilon] Processing NODE_6553_length_500_cov_22.889182:1-500 [pilon] NODE_9754_length_336_cov_14.744186:1-336 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 63, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 336 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9754_length_336_cov_14.744186:1-336 [pilon] Processing NODE_14887_length_243_cov_6.836066:1-243 [pilon] NODE_14200_length_243_cov_12.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14200_length_243_cov_12.590164:1-243 [pilon] Processing NODE_13633_length_243_cov_17.196721:1-243 [pilon] NODE_9221_length_357_cov_13.444915:1-357 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 70, Coverage: 6, minDepth: 5 [pilon] Confirmed 211 of 357 bases (59.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9221_length_357_cov_13.444915:1-357 [pilon] Processing NODE_11334_length_270_cov_18.691275:1-270 [pilon] NODE_11803_length_252_cov_28.190840:1-252 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 76, Coverage: 3, minDepth: 5 [pilon] Confirmed 39 of 252 bases (15.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11803_length_252_cov_28.190840:1-252 [pilon] Processing NODE_7840_length_425_cov_17.184211:1-425 [pilon] NODE_8088_length_414_cov_12.245734:1-414 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 76, Coverage: 16, minDepth: 5 [pilon] Confirmed 297 of 414 bases (71.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8088_length_414_cov_12.245734:1-414 [pilon] Processing NODE_6069_length_534_cov_19.433414:1-534 [pilon] NODE_10066_length_323_cov_8.450495:1-323 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 39, Coverage: 3, minDepth: 5 [pilon] Confirmed 63 of 323 bases (19.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10066_length_323_cov_8.450495:1-323 [pilon] Processing NODE_10812_length_292_cov_12.374269:1-292 [pilon] NODE_2108_length_1057_cov_2.736111:1-1057 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 82, Coverage: 9, minDepth: 5 [pilon] Confirmed 756 of 1057 bases (71.52%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2108_length_1057_cov_2.736111:1-1057 [pilon] Processing NODE_12863_length_243_cov_24.368852:1-243 [pilon] NODE_9443_length_348_cov_18.431718:1-348 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 89, Coverage: 10, minDepth: 5 [pilon] Confirmed 219 of 348 bases (62.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9443_length_348_cov_18.431718:1-348 [pilon] Processing NODE_8910_length_371_cov_15.208000:1-371 [pilon] NODE_2684_length_932_cov_11.199753:1-932 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 263, Coverage: 22, minDepth: 6 [pilon] Confirmed 891 of 932 bases (95.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2684_length_932_cov_11.199753:1-932 [pilon] Processing NODE_12238_length_243_cov_35.040984:1-243 [pilon] NODE_2740_length_920_cov_10.478098:1-920 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 255, Coverage: 19, minDepth: 5 [pilon] Confirmed 642 of 920 bases (69.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2740_length_920_cov_10.478098:1-920 [pilon] Processing NODE_3106_length_850_cov_46.352538:1-850 [pilon] NODE_12098_length_244_cov_9.268293:1-244 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12098_length_244_cov_9.268293:1-244 [pilon] Processing NODE_3939_length_722_cov_30.011647:1-722 [pilon] NODE_8949_length_369_cov_12.213710:1-369 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 62, Coverage: 4, minDepth: 5 [pilon] Confirmed 141 of 369 bases (38.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8949_length_369_cov_12.213710:1-369 [pilon] Processing NODE_12177_length_243_cov_37.590164:1-243 [pilon] NODE_11233_length_274_cov_12.568627:1-274 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 36, Coverage: 5, minDepth: 5 [pilon] Confirmed 162 of 274 bases (59.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11233_length_274_cov_12.568627:1-274 [pilon] Processing NODE_2569_length_953_cov_18.675481:1-953 [pilon] NODE_2736_length_921_cov_4.771250:1-921 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 119, Coverage: 17, minDepth: 5 [pilon] Confirmed 682 of 921 bases (74.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2736_length_921_cov_4.771250:1-921 [pilon] Processing NODE_9035_length_364_cov_66.197531:1-364 [pilon] NODE_2615_length_943_cov_1.259124:1-943 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 42, Coverage: 6, minDepth: 5 [pilon] Confirmed 525 of 943 bases (55.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2615_length_943_cov_1.259124:1-943 [pilon] Processing NODE_4473_length_664_cov_3.357274:1-664 [pilon] NODE_8026_length_417_cov_17.895270:1-417 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 116, Coverage: 17, minDepth: 5 [pilon] Confirmed 322 of 417 bases (77.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8026_length_417_cov_17.895270:1-417 [pilon] Processing NODE_13044_length_243_cov_22.475410:1-243 [pilon] NODE_12472_length_243_cov_29.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 86, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12472_length_243_cov_29.606557:1-243 [pilon] Processing NODE_8594_length_389_cov_10.757463:1-389 [pilon] NODE_12914_length_243_cov_23.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12914_length_243_cov_23.942623:1-243 [pilon] Processing NODE_4043_length_711_cov_2.822034:1-711 [pilon] NODE_9864_length_331_cov_18.352381:1-331 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 89, Coverage: 13, minDepth: 5 [pilon] Confirmed 268 of 331 bases (80.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9864_length_331_cov_18.352381:1-331 [pilon] Processing NODE_5690_length_564_cov_5.988713:1-564 [pilon] NODE_4136_length_700_cov_2.620035:1-700 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 42, Coverage: 7, minDepth: 5 [pilon] Confirmed 466 of 700 bases (66.57%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4136_length_700_cov_2.620035:1-700 [pilon] Processing NODE_6172_length_527_cov_0.566502:1-527 [pilon] NODE_13940_length_243_cov_14.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13940_length_243_cov_14.581967:1-243 [pilon] Processing NODE_1151_length_1417_cov_24.013117:1-1417 [pilon] NODE_1199_length_1398_cov_42.302271:1-1398 log: [pilon] frags shovill.bam: coverage 102 [pilon] Total Reads: 1263, Coverage: 102, minDepth: 26 [pilon] Confirmed 1106 of 1398 bases (79.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1199_length_1398_cov_42.302271:1-1398 [pilon] Processing NODE_225_length_2414_cov_26.068905:1-2414 [pilon] NODE_14079_length_243_cov_13.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14079_length_243_cov_13.639344:1-243 [pilon] Processing NODE_746_length_1671_cov_1.616129:1-1671 [pilon] NODE_10710_length_297_cov_20.625000:1-297 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 74, Coverage: 4, minDepth: 5 [pilon] Confirmed 109 of 297 bases (36.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10710_length_297_cov_20.625000:1-297 [pilon] Processing NODE_8245_length_407_cov_0.727273:1-407 [pilon] NODE_13496_length_243_cov_18.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13496_length_243_cov_18.377049:1-243 [pilon] Processing NODE_14816_length_243_cov_7.565574:1-243 [pilon] NODE_3229_length_829_cov_4.172316:1-829 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 69, Coverage: 11, minDepth: 5 [pilon] Confirmed 622 of 829 bases (75.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3229_length_829_cov_4.172316:1-829 [pilon] Processing NODE_2259_length_1019_cov_36.375278:1-1019 [pilon] NODE_10812_length_292_cov_12.374269:1-292 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 48, Coverage: 3, minDepth: 5 [pilon] Confirmed 113 of 292 bases (38.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10812_length_292_cov_12.374269:1-292 [pilon] Processing NODE_4417_length_670_cov_1.045537:1-670 [pilon] NODE_13633_length_243_cov_17.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13633_length_243_cov_17.196721:1-243 [pilon] Processing NODE_1292_length_1344_cov_2.761243:1-1344 [pilon] NODE_14887_length_243_cov_6.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14887_length_243_cov_6.836066:1-243 [pilon] Processing NODE_13815_length_243_cov_15.524590:1-243 [pilon] NODE_11334_length_270_cov_18.691275:1-270 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 63, Coverage: 6, minDepth: 5 [pilon] Confirmed 165 of 270 bases (61.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11334_length_270_cov_18.691275:1-270 [pilon] Processing NODE_13461_length_243_cov_18.762295:1-243 [pilon] NODE_1839_length_1132_cov_42.265084:1-1132 log: [pilon] frags shovill.bam: coverage 98 [pilon] Total Reads: 978, Coverage: 98, minDepth: 25 [pilon] Confirmed 1006 of 1132 bases (88.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1839_length_1132_cov_42.265084:1-1132 [pilon] Processing NODE_8888_length_372_cov_24.509960:1-372 [pilon] NODE_6553_length_500_cov_22.889182:1-500 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 220, Coverage: 30, minDepth: 8 [pilon] Confirmed 348 of 500 bases (69.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6553_length_500_cov_22.889182:1-500 [pilon] Processing NODE_12720_length_243_cov_25.975410:1-243 [pilon] NODE_7840_length_425_cov_17.184211:1-425 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 112, Coverage: 17, minDepth: 5 [pilon] Confirmed 357 of 425 bases (84.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7840_length_425_cov_17.184211:1-425 [pilon] Processing NODE_9529_length_345_cov_12.955357:1-345 [pilon] NODE_3106_length_850_cov_46.352538:1-850 log: [pilon] frags shovill.bam: coverage 95 [pilon] Total Reads: 800, Coverage: 95, minDepth: 24 [pilon] Confirmed 674 of 850 bases (79.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3106_length_850_cov_46.352538:1-850 [pilon] Processing NODE_14548_length_243_cov_9.918033:1-243 [pilon] NODE_3939_length_722_cov_30.011647:1-722 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 432, Coverage: 61, minDepth: 15 [pilon] Confirmed 644 of 722 bases (89.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3939_length_722_cov_30.011647:1-722 [pilon] NODE_6069_length_534_cov_19.433414:1-534 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 201, Coverage: 15, minDepth: 5 [pilon] Confirmed 291 of 534 bases (54.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6069_length_534_cov_19.433414:1-534 [pilon] Processing NODE_11777_length_254_cov_10.300752:1-254 [pilon] Processing NODE_4232_length_689_cov_22.725352:1-689 [pilon] NODE_9035_length_364_cov_66.197531:1-364 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 354, Coverage: 66, minDepth: 17 [pilon] Confirmed 321 of 364 bases (88.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9035_length_364_cov_66.197531:1-364 [pilon] Processing NODE_12913_length_243_cov_23.959016:1-243 [pilon] NODE_12863_length_243_cov_24.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12863_length_243_cov_24.368852:1-243 [pilon] Processing NODE_12979_length_243_cov_23.163934:1-243 [pilon] NODE_8910_length_371_cov_15.208000:1-371 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 85, Coverage: 2, minDepth: 5 [pilon] Confirmed 115 of 371 bases (31.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8910_length_371_cov_15.208000:1-371 [pilon] Processing NODE_4111_length_704_cov_4.113208:1-704 [pilon] NODE_12238_length_243_cov_35.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12238_length_243_cov_35.040984:1-243 [pilon] Processing NODE_13077_length_243_cov_22.172131:1-243 [pilon] NODE_12177_length_243_cov_37.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12177_length_243_cov_37.590164:1-243 [pilon] Processing NODE_8052_length_415_cov_41.612245:1-415 [pilon] NODE_2569_length_953_cov_18.675481:1-953 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 355, Coverage: 32, minDepth: 8 [pilon] Confirmed 829 of 953 bases (86.99%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2569_length_953_cov_18.675481:1-953 [pilon] Processing NODE_14085_length_243_cov_13.590164:1-243 [pilon] NODE_4473_length_664_cov_3.357274:1-664 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 46, Coverage: 8, minDepth: 5 [pilon] Confirmed 415 of 664 bases (62.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4473_length_664_cov_3.357274:1-664 [pilon] Processing NODE_5498_length_577_cov_11.342105:1-577 [pilon] NODE_13044_length_243_cov_22.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13044_length_243_cov_22.475410:1-243 [pilon] Processing NODE_5700_length_563_cov_41.108597:1-563 [pilon] NODE_14548_length_243_cov_9.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14548_length_243_cov_9.918033:1-243 [pilon] Processing NODE_9066_length_363_cov_21.198347:1-363 [pilon] NODE_8594_length_389_cov_10.757463:1-389 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 214 of 389 bases (55.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8594_length_389_cov_10.757463:1-389 [pilon] Processing NODE_13635_length_243_cov_17.172131:1-243 [pilon] NODE_4043_length_711_cov_2.822034:1-711 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 50, Coverage: 8, minDepth: 5 [pilon] Confirmed 582 of 711 bases (81.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4043_length_711_cov_2.822034:1-711 [pilon] Processing NODE_6942_length_475_cov_1.031073:1-475 [pilon] NODE_4417_length_670_cov_1.045537:1-670 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 25, Coverage: 5, minDepth: 5 [pilon] Confirmed 312 of 670 bases (46.57%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4417_length_670_cov_1.045537:1-670 [pilon] Processing NODE_7045_length_468_cov_20.936599:1-468 [pilon] NODE_5690_length_564_cov_5.988713:1-564 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 65, Coverage: 7, minDepth: 5 [pilon] Confirmed 361 of 564 bases (64.01%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5690_length_564_cov_5.988713:1-564 [pilon] Processing NODE_8734_length_381_cov_9.907692:1-381 [pilon] NODE_6172_length_527_cov_0.566502:1-527 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 527 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6172_length_527_cov_0.566502:1-527 [pilon] Processing NODE_8528_length_392_cov_45.158672:1-392 [pilon] NODE_11777_length_254_cov_10.300752:1-254 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 29, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 254 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11777_length_254_cov_10.300752:1-254 [pilon] Processing NODE_11618_length_259_cov_5.673913:1-259 [pilon] NODE_746_length_1671_cov_1.616129:1-1671 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 70, Coverage: 5, minDepth: 5 [pilon] Confirmed 845 of 1671 bases (50.57%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_746_length_1671_cov_1.616129:1-1671 [pilon] Processing NODE_15012_length_243_cov_5.295082:1-243 [pilon] NODE_14816_length_243_cov_7.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14816_length_243_cov_7.565574:1-243 [pilon] Processing NODE_13310_length_243_cov_20.172131:1-243 [pilon] NODE_13461_length_243_cov_18.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13461_length_243_cov_18.762295:1-243 [pilon] Processing NODE_13672_length_243_cov_16.778689:1-243 [pilon] NODE_1151_length_1417_cov_24.013117:1-1417 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 716, Coverage: 60, minDepth: 15 [pilon] Confirmed 1171 of 1417 bases (82.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1151_length_1417_cov_24.013117:1-1417 [pilon] Processing NODE_12091_length_244_cov_13.682927:1-244 [pilon] NODE_8245_length_407_cov_0.727273:1-407 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 4 of 407 bases (0.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8245_length_407_cov_0.727273:1-407 [pilon] Processing NODE_3403_length_798_cov_3.872969:1-798 [pilon] NODE_12913_length_243_cov_23.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12913_length_243_cov_23.959016:1-243 [pilon] Processing NODE_2700_length_929_cov_2.698020:1-929 [pilon] NODE_225_length_2414_cov_26.068905:1-2414 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 1503, Coverage: 43, minDepth: 11 [pilon] Confirmed 2084 of 2414 bases (86.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_225_length_2414_cov_26.068905:1-2414 [pilon] Processing NODE_5081_length_611_cov_84.622449:1-611 [pilon] NODE_13815_length_243_cov_15.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13815_length_243_cov_15.524590:1-243 [pilon] Processing NODE_7406_length_448_cov_0.779817:1-448 [pilon] NODE_2259_length_1019_cov_36.375278:1-1019 log: [pilon] frags shovill.bam: coverage 87 [pilon] Total Reads: 770, Coverage: 87, minDepth: 22 [pilon] Confirmed 883 of 1019 bases (86.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2259_length_1019_cov_36.375278:1-1019 [pilon] Processing NODE_5631_length_568_cov_11.161074:1-568 [pilon] NODE_12720_length_243_cov_25.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12720_length_243_cov_25.975410:1-243 [pilon] Processing NODE_12515_length_243_cov_28.836066:1-243 [pilon] NODE_9529_length_345_cov_12.955357:1-345 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 77, Coverage: 10, minDepth: 5 [pilon] Confirmed 215 of 345 bases (62.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9529_length_345_cov_12.955357:1-345 [pilon] Processing NODE_15129_length_202_cov_61.395062:1-202 [pilon] NODE_1292_length_1344_cov_2.761243:1-1344 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 97, Coverage: 9, minDepth: 5 [pilon] Confirmed 901 of 1344 bases (67.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1292_length_1344_cov_2.761243:1-1344 [pilon] Processing NODE_14075_length_243_cov_13.655738:1-243 [pilon] NODE_8888_length_372_cov_24.509960:1-372 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 136, Coverage: 21, minDepth: 5 [pilon] Confirmed 321 of 372 bases (86.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8888_length_372_cov_24.509960:1-372 [pilon] Processing NODE_5258_length_596_cov_13.132632:1-596 [pilon] NODE_8052_length_415_cov_41.612245:1-415 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 263, Coverage: 33, minDepth: 8 [pilon] Confirmed 328 of 415 bases (79.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8052_length_415_cov_41.612245:1-415 [pilon] Processing NODE_11189_length_276_cov_17.025806:1-276 [pilon] NODE_4232_length_689_cov_22.725352:1-689 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 350, Coverage: 34, minDepth: 9 [pilon] Confirmed 468 of 689 bases (67.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4232_length_689_cov_22.725352:1-689 [pilon] Processing NODE_3054_length_862_cov_2.238866:1-862 [pilon] NODE_12979_length_243_cov_23.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12979_length_243_cov_23.163934:1-243 [pilon] Processing NODE_7669_length_434_cov_22.392971:1-434 [pilon] NODE_4111_length_704_cov_4.113208:1-704 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 66, Coverage: 11, minDepth: 5 [pilon] Confirmed 464 of 704 bases (65.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4111_length_704_cov_4.113208:1-704 [pilon] Processing NODE_14965_length_243_cov_5.934426:1-243 [pilon] NODE_13077_length_243_cov_22.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13077_length_243_cov_22.172131:1-243 [pilon] Processing NODE_9019_length_366_cov_6.048980:1-366 [pilon] NODE_14085_length_243_cov_13.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14085_length_243_cov_13.590164:1-243 [pilon] Processing NODE_3492_length_785_cov_25.353916:1-785 [pilon] NODE_9066_length_363_cov_21.198347:1-363 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 90, Coverage: 14, minDepth: 5 [pilon] Confirmed 233 of 363 bases (64.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9066_length_363_cov_21.198347:1-363 [pilon] Processing NODE_5875_length_549_cov_36.733645:1-549 [pilon] NODE_5498_length_577_cov_11.342105:1-577 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 126, Coverage: 18, minDepth: 5 [pilon] Confirmed 392 of 577 bases (67.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5498_length_577_cov_11.342105:1-577 [pilon] Processing NODE_919_length_1545_cov_3.846208:1-1545 [pilon] NODE_13310_length_243_cov_20.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13310_length_243_cov_20.172131:1-243 [pilon] Processing NODE_2114_length_1055_cov_28.826552:1-1055 [pilon] NODE_7045_length_468_cov_20.936599:1-468 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 163, Coverage: 8, minDepth: 5 [pilon] Confirmed 257 of 468 bases (54.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7045_length_468_cov_20.936599:1-468 [pilon] Processing NODE_12546_length_243_cov_28.360656:1-243 [pilon] NODE_6942_length_475_cov_1.031073:1-475 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 11, Coverage: 2, minDepth: 5 [pilon] Confirmed 43 of 475 bases (9.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6942_length_475_cov_1.031073:1-475 [pilon] Processing NODE_10415_length_308_cov_17.497326:1-308 [pilon] NODE_13635_length_243_cov_17.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13635_length_243_cov_17.172131:1-243 [pilon] Processing NODE_2830_length_905_cov_13.193878:1-905 [pilon] NODE_11189_length_276_cov_17.025806:1-276 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 69, Coverage: 3, minDepth: 5 [pilon] Confirmed 72 of 276 bases (26.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11189_length_276_cov_17.025806:1-276 [pilon] Processing NODE_13537_length_243_cov_18.016393:1-243 [pilon] NODE_5700_length_563_cov_41.108597:1-563 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 451, Coverage: 74, minDepth: 19 [pilon] Confirmed 487 of 563 bases (86.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5700_length_563_cov_41.108597:1-563 [pilon] Processing NODE_6152_length_528_cov_14.710074:1-528 [pilon] NODE_8528_length_392_cov_45.158672:1-392 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 286, Coverage: 45, minDepth: 11 [pilon] Confirmed 347 of 392 bases (88.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8528_length_392_cov_45.158672:1-392 [pilon] Processing NODE_3490_length_786_cov_15.054135:1-786 [pilon] NODE_15012_length_243_cov_5.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15012_length_243_cov_5.295082:1-243 [pilon] Processing NODE_5723_length_561_cov_28.429545:1-561 [pilon] NODE_13672_length_243_cov_16.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13672_length_243_cov_16.778689:1-243 [pilon] Processing NODE_12803_length_243_cov_25.008197:1-243 [pilon] NODE_8734_length_381_cov_9.907692:1-381 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 64, Coverage: 6, minDepth: 5 [pilon] Confirmed 166 of 381 bases (43.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8734_length_381_cov_9.907692:1-381 [pilon] Processing NODE_3385_length_800_cov_3.016200:1-800 [pilon] NODE_12091_length_244_cov_13.682927:1-244 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 34, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12091_length_244_cov_13.682927:1-244 [pilon] Processing NODE_11642_length_258_cov_17.036496:1-258 [pilon] NODE_11618_length_259_cov_5.673913:1-259 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 259 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11618_length_259_cov_5.673913:1-259 [pilon] Processing NODE_2661_length_935_cov_15.205160:1-935 [pilon] NODE_2700_length_929_cov_2.698020:1-929 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 61, Coverage: 8, minDepth: 5 [pilon] Confirmed 563 of 929 bases (60.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2700_length_929_cov_2.698020:1-929 [pilon] Processing NODE_15078_length_234_cov_15.362832:1-234 [pilon] NODE_3403_length_798_cov_3.872969:1-798 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 66, Coverage: 10, minDepth: 5 [pilon] Confirmed 573 of 798 bases (71.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3403_length_798_cov_3.872969:1-798 [pilon] Processing NODE_5265_length_595_cov_29.327004:1-595 [pilon] NODE_14075_length_243_cov_13.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14075_length_243_cov_13.655738:1-243 [pilon] Processing NODE_11971_length_246_cov_30.840000:1-246 [pilon] NODE_7406_length_448_cov_0.779817:1-448 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 448 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7406_length_448_cov_0.779817:1-448 [pilon] Processing NODE_8110_length_413_cov_2.780822:1-413 [pilon] NODE_5258_length_596_cov_13.132632:1-596 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 163, Coverage: 15, minDepth: 5 [pilon] Confirmed 492 of 596 bases (82.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5258_length_596_cov_13.132632:1-596 [pilon] Processing NODE_14150_length_243_cov_13.106557:1-243 [pilon] NODE_15129_length_202_cov_61.395062:1-202 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 105, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 202 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15129_length_202_cov_61.395062:1-202 [pilon] Processing NODE_3912_length_726_cov_3.317355:1-726 [pilon] NODE_12515_length_243_cov_28.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12515_length_243_cov_28.836066:1-243 [pilon] Processing NODE_14270_length_243_cov_12.057377:1-243 [pilon] NODE_5631_length_568_cov_11.161074:1-568 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 174, Coverage: 32, minDepth: 8 [pilon] Confirmed 446 of 568 bases (78.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5631_length_568_cov_11.161074:1-568 [pilon] Processing NODE_12540_length_243_cov_28.459016:1-243 [pilon] NODE_5081_length_611_cov_84.622449:1-611 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 1042, Coverage: 39, minDepth: 10 [pilon] Confirmed 601 of 611 bases (98.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5081_length_611_cov_84.622449:1-611 [pilon] Processing NODE_9706_length_338_cov_12.327189:1-338 [pilon] NODE_3054_length_862_cov_2.238866:1-862 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 59, Coverage: 8, minDepth: 5 [pilon] Confirmed 703 of 862 bases (81.55%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3054_length_862_cov_2.238866:1-862 [pilon] Processing NODE_13266_length_243_cov_20.459016:1-243 [pilon] NODE_14965_length_243_cov_5.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14965_length_243_cov_5.934426:1-243 [pilon] Processing NODE_6518_length_502_cov_8.892388:1-502 [pilon] NODE_5875_length_549_cov_36.733645:1-549 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 379, Coverage: 34, minDepth: 9 [pilon] Confirmed 374 of 549 bases (68.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5875_length_549_cov_36.733645:1-549 [pilon] Processing NODE_3918_length_725_cov_27.250000:1-725 [pilon] NODE_7669_length_434_cov_22.392971:1-434 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 159, Coverage: 22, minDepth: 6 [pilon] Confirmed 372 of 434 bases (85.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7669_length_434_cov_22.392971:1-434 [pilon] Processing NODE_8650_length_385_cov_22.352273:1-385 [pilon] NODE_9019_length_366_cov_6.048980:1-366 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 28, Coverage: 2, minDepth: 5 [pilon] Confirmed 110 of 366 bases (30.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9019_length_366_cov_6.048980:1-366 [pilon] Processing NODE_10659_length_300_cov_5.608939:1-300 [pilon] NODE_2114_length_1055_cov_28.826552:1-1055 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 619, Coverage: 58, minDepth: 15 [pilon] Confirmed 793 of 1055 bases (75.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2114_length_1055_cov_28.826552:1-1055 [pilon] Processing NODE_9013_length_366_cov_10.836735:1-366 [pilon] NODE_13537_length_243_cov_18.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13537_length_243_cov_18.016393:1-243 [pilon] Processing NODE_10206_length_317_cov_16.811224:1-317 [pilon] NODE_12546_length_243_cov_28.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12546_length_243_cov_28.360656:1-243 [pilon] Processing NODE_6321_length_516_cov_0.577215:1-516 [pilon] NODE_3492_length_785_cov_25.353916:1-785 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 445, Coverage: 43, minDepth: 11 [pilon] Confirmed 569 of 785 bases (72.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3492_length_785_cov_25.353916:1-785 [pilon] Processing NODE_12756_length_243_cov_25.483607:1-243 [pilon] NODE_919_length_1545_cov_3.846208:1-1545 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 155, Coverage: 12, minDepth: 5 [pilon] Confirmed 1370 of 1545 bases (88.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_919_length_1545_cov_3.846208:1-1545 [pilon] Processing NODE_14064_length_243_cov_13.721311:1-243 [pilon] NODE_10415_length_308_cov_17.497326:1-308 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 86, Coverage: 3, minDepth: 5 [pilon] Confirmed 94 of 308 bases (30.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10415_length_308_cov_17.497326:1-308 [pilon] Processing NODE_10449_length_306_cov_20.632432:1-306 [pilon] NODE_2830_length_905_cov_13.193878:1-905 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 253, Coverage: 22, minDepth: 6 [pilon] Confirmed 760 of 905 bases (83.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2830_length_905_cov_13.193878:1-905 [pilon] Processing NODE_12332_length_243_cov_32.532787:1-243 [pilon] NODE_3490_length_786_cov_15.054135:1-786 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 228, Coverage: 25, minDepth: 6 [pilon] Confirmed 668 of 786 bases (84.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3490_length_786_cov_15.054135:1-786 [pilon] Processing NODE_6817_length_482_cov_2.036011:1-482 [pilon] NODE_6152_length_528_cov_14.710074:1-528 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 141, Coverage: 19, minDepth: 5 [pilon] Confirmed 444 of 528 bases (84.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6152_length_528_cov_14.710074:1-528 [pilon] Processing NODE_11424_length_267_cov_9.410959:1-267 [pilon] NODE_12803_length_243_cov_25.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12803_length_243_cov_25.008197:1-243 [pilon] Processing NODE_2902_length_892_cov_3.661479:1-892 [pilon] NODE_5723_length_561_cov_28.429545:1-561 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 301, Coverage: 36, minDepth: 9 [pilon] Confirmed 472 of 561 bases (84.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5723_length_561_cov_28.429545:1-561 [pilon] Processing NODE_7761_length_429_cov_16.850649:1-429 [pilon] NODE_3918_length_725_cov_27.250000:1-725 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 345, Coverage: 49, minDepth: 12 [pilon] Confirmed 575 of 725 bases (79.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3918_length_725_cov_27.250000:1-725 [pilon] Processing NODE_13575_length_243_cov_17.721311:1-243 [pilon] NODE_11642_length_258_cov_17.036496:1-258 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 50, Coverage: 7, minDepth: 5 [pilon] Confirmed 177 of 258 bases (68.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11642_length_258_cov_17.036496:1-258 [pilon] Processing NODE_2247_length_1021_cov_3.342222:1-1021 [pilon] NODE_3385_length_800_cov_3.016200:1-800 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 56, Coverage: 9, minDepth: 5 [pilon] Confirmed 537 of 800 bases (67.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3385_length_800_cov_3.016200:1-800 [pilon] Processing NODE_7988_length_419_cov_1.191275:1-419 [pilon] NODE_8110_length_413_cov_2.780822:1-413 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 20, Coverage: 6, minDepth: 5 [pilon] Confirmed 271 of 413 bases (65.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8110_length_413_cov_2.780822:1-413 [pilon] Processing NODE_541_length_1865_cov_30.339450:1-1865 [pilon] NODE_15078_length_234_cov_15.362832:1-234 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 38, Coverage: 3, minDepth: 5 [pilon] Confirmed 64 of 234 bases (27.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15078_length_234_cov_15.362832:1-234 [pilon] Processing NODE_6508_length_503_cov_19.628272:1-503 [pilon] NODE_14150_length_243_cov_13.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14150_length_243_cov_13.106557:1-243 [pilon] Processing NODE_10828_length_291_cov_21.964706:1-291 [pilon] NODE_5265_length_595_cov_29.327004:1-595 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 375, Coverage: 28, minDepth: 7 [pilon] Confirmed 398 of 595 bases (66.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5265_length_595_cov_29.327004:1-595 [pilon] Processing NODE_4578_length_655_cov_7.516854:1-655 [pilon] NODE_2661_length_935_cov_15.205160:1-935 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 304, Coverage: 34, minDepth: 9 [pilon] Confirmed 692 of 935 bases (74.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2661_length_935_cov_15.205160:1-935 [pilon] Processing NODE_12240_length_243_cov_35.008197:1-243 [pilon] NODE_9013_length_366_cov_10.836735:1-366 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 58, Coverage: 8, minDepth: 5 [pilon] Confirmed 243 of 366 bases (66.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9013_length_366_cov_10.836735:1-366 [pilon] Processing NODE_13568_length_243_cov_17.754098:1-243 [pilon] NODE_11971_length_246_cov_30.840000:1-246 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 93, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 246 bases (52.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11971_length_246_cov_30.840000:1-246 [pilon] Processing NODE_4480_length_663_cov_22.177122:1-663 [pilon] NODE_3912_length_726_cov_3.317355:1-726 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 67, Coverage: 11, minDepth: 5 [pilon] Confirmed 580 of 726 bases (79.89%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3912_length_726_cov_3.317355:1-726 [pilon] Processing NODE_852_length_1594_cov_28.918534:1-1594 [pilon] NODE_14270_length_243_cov_12.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12540_length_243_cov_28.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12540_length_243_cov_28.459016:1-243 [pilon] Finished processing NODE_14270_length_243_cov_12.057377:1-243 [pilon] Processing NODE_14700_length_243_cov_8.573770:1-243 [pilon] Processing NODE_3451_length_791_cov_26.322388:1-791 [pilon] NODE_9706_length_338_cov_12.327189:1-338 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 67, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 338 bases (44.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9706_length_338_cov_12.327189:1-338 [pilon] Processing NODE_12814_length_243_cov_24.877049:1-243 [pilon] NODE_10206_length_317_cov_16.811224:1-317 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 62, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 317 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10206_length_317_cov_16.811224:1-317 [pilon] Processing NODE_10463_length_306_cov_14.481081:1-306 [pilon] NODE_13266_length_243_cov_20.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13266_length_243_cov_20.459016:1-243 [pilon] Processing NODE_4881_length_628_cov_14.153846:1-628 [pilon] NODE_6518_length_502_cov_8.892388:1-502 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 87, Coverage: 8, minDepth: 5 [pilon] Confirmed 305 of 502 bases (60.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6518_length_502_cov_8.892388:1-502 [pilon] Processing NODE_7513_length_442_cov_64.750779:1-442 [pilon] NODE_8650_length_385_cov_22.352273:1-385 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 126, Coverage: 25, minDepth: 6 [pilon] Confirmed 333 of 385 bases (86.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8650_length_385_cov_22.352273:1-385 [pilon] Processing NODE_3338_length_807_cov_17.797376:1-807 [pilon] NODE_6321_length_516_cov_0.577215:1-516 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 516 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6321_length_516_cov_0.577215:1-516 [pilon] Processing NODE_7996_length_418_cov_27.265993:1-418 [pilon] NODE_10659_length_300_cov_5.608939:1-300 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10659_length_300_cov_5.608939:1-300 [pilon] Processing NODE_4906_length_626_cov_1.817822:1-626 [pilon] NODE_12756_length_243_cov_25.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12756_length_243_cov_25.483607:1-243 [pilon] Processing NODE_8237_length_407_cov_4.402098:1-407 [pilon] NODE_14064_length_243_cov_13.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14064_length_243_cov_13.721311:1-243 [pilon] Processing NODE_7792_length_428_cov_3.061889:1-428 [pilon] NODE_13575_length_243_cov_17.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13575_length_243_cov_17.721311:1-243 [pilon] Processing NODE_3320_length_812_cov_1.344428:1-812 [pilon] NODE_13568_length_243_cov_17.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13568_length_243_cov_17.754098:1-243 [pilon] Processing NODE_5897_length_548_cov_5.018735:1-548 [pilon] NODE_10449_length_306_cov_20.632432:1-306 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 87, Coverage: 11, minDepth: 5 [pilon] Confirmed 239 of 306 bases (78.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10449_length_306_cov_20.632432:1-306 [pilon] Processing NODE_15023_length_243_cov_5.147541:1-243 [pilon] NODE_6817_length_482_cov_2.036011:1-482 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 325 of 482 bases (67.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6817_length_482_cov_2.036011:1-482 [pilon] Processing NODE_6929_length_476_cov_0.797183:1-476 [pilon] NODE_10463_length_306_cov_14.481081:1-306 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 62, Coverage: 3, minDepth: 5 [pilon] Confirmed 78 of 306 bases (25.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10463_length_306_cov_14.481081:1-306 [pilon] Processing NODE_14915_length_243_cov_6.540984:1-243 [pilon] NODE_11424_length_267_cov_9.410959:1-267 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 29, Coverage: 6, minDepth: 5 [pilon] Confirmed 193 of 267 bases (72.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11424_length_267_cov_9.410959:1-267 [pilon] Processing NODE_14849_length_243_cov_7.221311:1-243 [pilon] NODE_12332_length_243_cov_32.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12332_length_243_cov_32.532787:1-243 [pilon] Processing NODE_1139_length_1423_cov_13.656682:1-1423 [pilon] NODE_2902_length_892_cov_3.661479:1-892 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 79, Coverage: 11, minDepth: 5 [pilon] Confirmed 566 of 892 bases (63.45%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2902_length_892_cov_3.661479:1-892 [pilon] Processing NODE_1472_length_1274_cov_3.032090:1-1274 [pilon] NODE_7761_length_429_cov_16.850649:1-429 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 122, Coverage: 10, minDepth: 5 [pilon] Confirmed 244 of 429 bases (56.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7761_length_429_cov_16.850649:1-429 [pilon] Processing NODE_6119_length_530_cov_43.273839:1-530 [pilon] NODE_7988_length_419_cov_1.191275:1-419 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 13, Coverage: 4, minDepth: 5 [pilon] Confirmed 179 of 419 bases (42.72%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7988_length_419_cov_1.191275:1-419 [pilon] Processing NODE_7094_length_465_cov_19.546512:1-465 [pilon] NODE_10828_length_291_cov_21.964706:1-291 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 74, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 291 bases (44.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10828_length_291_cov_21.964706:1-291 [pilon] Processing NODE_5574_length_573_cov_0.670354:1-573 [pilon] NODE_4578_length_655_cov_7.516854:1-655 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 121, Coverage: 14, minDepth: 5 [pilon] Confirmed 465 of 655 bases (70.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4578_length_655_cov_7.516854:1-655 [pilon] Processing NODE_7336_length_451_cov_33.500000:1-451 [pilon] NODE_6508_length_503_cov_19.628272:1-503 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 170, Coverage: 26, minDepth: 7 [pilon] Confirmed 344 of 503 bases (68.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6508_length_503_cov_19.628272:1-503 [pilon] Processing NODE_5599_length_570_cov_27.434298:1-570 [pilon] NODE_2247_length_1021_cov_3.342222:1-1021 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 92, Coverage: 11, minDepth: 5 [pilon] Confirmed 849 of 1021 bases (83.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2247_length_1021_cov_3.342222:1-1021 [pilon] Processing NODE_7281_length_455_cov_33.745509:1-455 [pilon] NODE_541_length_1865_cov_30.339450:1-1865 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 1238, Coverage: 69, minDepth: 17 [pilon] Confirmed 1643 of 1865 bases (88.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_541_length_1865_cov_30.339450:1-1865 [pilon] Processing NODE_6239_length_522_cov_2.845387:1-522 [pilon] NODE_7996_length_418_cov_27.265993:1-418 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 196, Coverage: 18, minDepth: 5 [pilon] Confirmed 366 of 418 bases (87.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7996_length_418_cov_27.265993:1-418 [pilon] Processing NODE_461_length_1962_cov_25.190657:1-1962 [pilon] NODE_14700_length_243_cov_8.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12814_length_243_cov_24.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12814_length_243_cov_24.877049:1-243 [pilon] Finished processing NODE_14700_length_243_cov_8.573770:1-243 [pilon] Processing NODE_9716_length_337_cov_22.129630:1-337 [pilon] Processing NODE_9217_length_357_cov_16.127119:1-357 [pilon] NODE_4480_length_663_cov_22.177122:1-663 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 293, Coverage: 32, minDepth: 8 [pilon] Confirmed 531 of 663 bases (80.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4480_length_663_cov_22.177122:1-663 [pilon] Processing NODE_11543_length_262_cov_20.304965:1-262 [pilon] NODE_852_length_1594_cov_28.918534:1-1594 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 838, Coverage: 41, minDepth: 10 [pilon] Confirmed 1237 of 1594 bases (77.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_852_length_1594_cov_28.918534:1-1594 [pilon] NODE_12240_length_243_cov_35.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12240_length_243_cov_35.008197:1-243 [pilon] Processing NODE_2131_length_1051_cov_25.360215:1-1051 [pilon] Processing NODE_6345_length_514_cov_9.648855:1-514 [pilon] NODE_4881_length_628_cov_14.153846:1-628 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 159, Coverage: 20, minDepth: 5 [pilon] Confirmed 462 of 628 bases (73.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4881_length_628_cov_14.153846:1-628 [pilon] Processing NODE_7686_length_433_cov_1.509615:1-433 [pilon] NODE_7513_length_442_cov_64.750779:1-442 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 462, Coverage: 86, minDepth: 22 [pilon] Confirmed 383 of 442 bases (86.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7513_length_442_cov_64.750779:1-442 [pilon] Processing NODE_9844_length_333_cov_9.504717:1-333 [pilon] NODE_3451_length_791_cov_26.322388:1-791 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 471, Coverage: 31, minDepth: 8 [pilon] Confirmed 544 of 791 bases (68.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3451_length_791_cov_26.322388:1-791 [pilon] Processing NODE_10229_length_315_cov_30.603093:1-315 [pilon] NODE_3338_length_807_cov_17.797376:1-807 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 291, Coverage: 29, minDepth: 7 [pilon] Confirmed 695 of 807 bases (86.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3338_length_807_cov_17.797376:1-807 [pilon] Processing NODE_8867_length_373_cov_53.400794:1-373 [pilon] NODE_4906_length_626_cov_1.817822:1-626 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 258 of 626 bases (41.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4906_length_626_cov_1.817822:1-626 [pilon] Processing NODE_3227_length_829_cov_19.241525:1-829 [pilon] NODE_3320_length_812_cov_1.344428:1-812 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 28, Coverage: 4, minDepth: 5 [pilon] Confirmed 264 of 812 bases (32.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3320_length_812_cov_1.344428:1-812 [pilon] Processing NODE_3890_length_729_cov_5.965461:1-729 [pilon] NODE_5897_length_548_cov_5.018735:1-548 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 52, Coverage: 9, minDepth: 5 [pilon] Confirmed 378 of 548 bases (68.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5897_length_548_cov_5.018735:1-548 [pilon] Processing NODE_9058_length_363_cov_26.896694:1-363 [pilon] NODE_8237_length_407_cov_4.402098:1-407 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 39, Coverage: 3, minDepth: 5 [pilon] Confirmed 61 of 407 bases (14.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8237_length_407_cov_4.402098:1-407 [pilon] Processing NODE_2991_length_874_cov_20.667995:1-874 [pilon] NODE_14915_length_243_cov_6.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14915_length_243_cov_6.540984:1-243 [pilon] Processing NODE_7905_length_423_cov_1.062914:1-423 [pilon] NODE_7792_length_428_cov_3.061889:1-428 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 297 of 428 bases (69.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7792_length_428_cov_3.061889:1-428 [pilon] Processing NODE_8273_length_405_cov_24.285211:1-405 [pilon] NODE_15023_length_243_cov_5.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_6929_length_476_cov_0.797183:1-476 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 27 of 476 bases (5.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15023_length_243_cov_5.147541:1-243 [pilon] Finished processing NODE_6929_length_476_cov_0.797183:1-476 [pilon] Processing NODE_2720_length_925_cov_18.310945:1-925 [pilon] Processing NODE_11539_length_262_cov_23.843972:1-262 [pilon] NODE_461_length_1962_cov_25.190657:1-1962 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 1010, Coverage: 41, minDepth: 10 [pilon] Confirmed 1677 of 1962 bases (85.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_461_length_1962_cov_25.190657:1-1962 [pilon] Processing NODE_10337_length_312_cov_14.130890:1-312 [pilon] NODE_14849_length_243_cov_7.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14849_length_243_cov_7.221311:1-243 [pilon] Processing NODE_11526_length_263_cov_9.971831:1-263 [pilon] NODE_1472_length_1274_cov_3.032090:1-1274 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 92, Coverage: 9, minDepth: 5 [pilon] Confirmed 1055 of 1274 bases (82.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1472_length_1274_cov_3.032090:1-1274 [pilon] Processing NODE_11417_length_267_cov_13.924658:1-267 [pilon] NODE_1139_length_1423_cov_13.656682:1-1423 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 403, Coverage: 31, minDepth: 8 [pilon] Confirmed 830 of 1423 bases (58.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1139_length_1423_cov_13.656682:1-1423 [pilon] Processing NODE_10900_length_288_cov_20.161677:1-288 [pilon] NODE_6119_length_530_cov_43.273839:1-530 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 374, Coverage: 69, minDepth: 17 [pilon] Confirmed 464 of 530 bases (87.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6119_length_530_cov_43.273839:1-530 [pilon] Processing NODE_15057_length_239_cov_78.516949:1-239 [pilon] NODE_5574_length_573_cov_0.670354:1-573 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 11, Coverage: 2, minDepth: 5 [pilon] Confirmed 61 of 573 bases (10.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5574_length_573_cov_0.670354:1-573 [pilon] Processing NODE_7502_length_443_cov_13.208075:1-443 [pilon] NODE_9716_length_337_cov_22.129630:1-337 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 96, Coverage: 12, minDepth: 5 [pilon] Confirmed 225 of 337 bases (66.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9716_length_337_cov_22.129630:1-337 [pilon] Processing NODE_4877_length_629_cov_1.344488:1-629 [pilon] NODE_9217_length_357_cov_16.127119:1-357 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 70, Coverage: 9, minDepth: 5 [pilon] Confirmed 238 of 357 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9217_length_357_cov_16.127119:1-357 [pilon] Processing NODE_7437_length_446_cov_41.581538:1-446 [pilon] NODE_7281_length_455_cov_33.745509:1-455 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 284, Coverage: 44, minDepth: 11 [pilon] Confirmed 395 of 455 bases (86.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7281_length_455_cov_33.745509:1-455 [pilon] Processing NODE_12662_length_243_cov_26.688525:1-243 [pilon] NODE_7094_length_465_cov_19.546512:1-465 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 147, Coverage: 14, minDepth: 5 [pilon] Confirmed 335 of 465 bases (72.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7094_length_465_cov_19.546512:1-465 [pilon] Processing NODE_2938_length_884_cov_5.600262:1-884 [pilon] NODE_5599_length_570_cov_27.434298:1-570 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 280, Coverage: 41, minDepth: 10 [pilon] Confirmed 418 of 570 bases (73.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5599_length_570_cov_27.434298:1-570 [pilon] Processing NODE_6848_length_481_cov_0.658333:1-481 [pilon] NODE_7336_length_451_cov_33.500000:1-451 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 320, Coverage: 23, minDepth: 6 [pilon] Confirmed 211 of 451 bases (46.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7336_length_451_cov_33.500000:1-451 [pilon] Processing NODE_450_length_1972_cov_16.837385:1-1972 [pilon] NODE_3890_length_729_cov_5.965461:1-729 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 86, Coverage: 11, minDepth: 5 [pilon] Confirmed 458 of 729 bases (62.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3890_length_729_cov_5.965461:1-729 [pilon] Processing NODE_7038_length_468_cov_29.691643:1-468 [pilon] NODE_6239_length_522_cov_2.845387:1-522 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 320 of 522 bases (61.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6239_length_522_cov_2.845387:1-522 [pilon] Processing NODE_8328_length_403_cov_8.070922:1-403 [pilon] NODE_11543_length_262_cov_20.304965:1-262 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 59, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 262 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11543_length_262_cov_20.304965:1-262 [pilon] Processing NODE_439_length_1983_cov_3.356069:1-1983 [pilon] NODE_9058_length_363_cov_26.896694:1-363 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 144, Coverage: 18, minDepth: 5 [pilon] Confirmed 274 of 363 bases (75.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9058_length_363_cov_26.896694:1-363 [pilon] Processing NODE_7834_length_426_cov_0.708197:1-426 [pilon] NODE_2131_length_1051_cov_25.360215:1-1051 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 573, Coverage: 45, minDepth: 11 [pilon] Confirmed 907 of 1051 bases (86.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2131_length_1051_cov_25.360215:1-1051 [pilon] Processing NODE_3440_length_793_cov_2.544643:1-793 [pilon] NODE_7686_length_433_cov_1.509615:1-433 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 24, Coverage: 7, minDepth: 5 [pilon] Confirmed 293 of 433 bases (67.67%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7686_length_433_cov_1.509615:1-433 [pilon] Processing NODE_5712_length_562_cov_36.591837:1-562 [pilon] NODE_9844_length_333_cov_9.504717:1-333 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 38, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 333 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9844_length_333_cov_9.504717:1-333 [pilon] Processing NODE_10019_length_324_cov_24.019704:1-324 [pilon] NODE_6345_length_514_cov_9.648855:1-514 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 84, Coverage: 8, minDepth: 5 [pilon] Confirmed 381 of 514 bases (74.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6345_length_514_cov_9.648855:1-514 [pilon] Processing NODE_8460_length_396_cov_15.516364:1-396 [pilon] NODE_7905_length_423_cov_1.062914:1-423 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 15, Coverage: 4, minDepth: 5 [pilon] Confirmed 214 of 423 bases (50.59%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7905_length_423_cov_1.062914:1-423 [pilon] Processing NODE_9086_length_362_cov_26.730290:1-362 [pilon] NODE_10229_length_315_cov_30.603093:1-315 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 127, Coverage: 5, minDepth: 5 [pilon] Confirmed 154 of 315 bases (48.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10229_length_315_cov_30.603093:1-315 [pilon] Processing NODE_1032_length_1479_cov_2.670839:1-1479 [pilon] NODE_8867_length_373_cov_53.400794:1-373 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 303, Coverage: 56, minDepth: 14 [pilon] Confirmed 327 of 373 bases (87.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8867_length_373_cov_53.400794:1-373 [pilon] Processing NODE_5140_length_606_cov_36.455670:1-606 [pilon] NODE_3227_length_829_cov_19.241525:1-829 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 317, Coverage: 26, minDepth: 7 [pilon] Confirmed 621 of 829 bases (74.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3227_length_829_cov_19.241525:1-829 [pilon] Processing NODE_7539_length_441_cov_20.684375:1-441 [pilon] NODE_10337_length_312_cov_14.130890:1-312 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 55, Coverage: 7, minDepth: 5 [pilon] Confirmed 246 of 312 bases (78.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10337_length_312_cov_14.130890:1-312 [pilon] Processing NODE_278_length_2287_cov_16.821791:1-2287 [pilon] NODE_2991_length_874_cov_20.667995:1-874 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 374, Coverage: 36, minDepth: 9 [pilon] Confirmed 664 of 874 bases (75.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2991_length_874_cov_20.667995:1-874 [pilon] Processing NODE_2009_length_1084_cov_33.442368:1-1084 [pilon] NODE_8273_length_405_cov_24.285211:1-405 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 171, Coverage: 11, minDepth: 5 [pilon] Confirmed 175 of 405 bases (43.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8273_length_405_cov_24.285211:1-405 [pilon] Processing NODE_13414_length_243_cov_19.155738:1-243 [pilon] NODE_2720_length_925_cov_18.310945:1-925 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 354, Coverage: 27, minDepth: 7 [pilon] Confirmed 740 of 925 bases (80.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2720_length_925_cov_18.310945:1-925 [pilon] Processing NODE_12136_length_243_cov_40.868852:1-243 [pilon] NODE_4877_length_629_cov_1.344488:1-629 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 305 of 629 bases (48.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4877_length_629_cov_1.344488:1-629 [pilon] Processing NODE_8453_length_396_cov_20.345455:1-396 [pilon] NODE_11526_length_263_cov_9.971831:1-263 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 263 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11526_length_263_cov_9.971831:1-263 [pilon] Processing NODE_7362_length_450_cov_16.650456:1-450 [pilon] NODE_11539_length_262_cov_23.843972:1-262 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 79, Coverage: 6, minDepth: 5 [pilon] Confirmed 144 of 262 bases (54.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11539_length_262_cov_23.843972:1-262 [pilon] Processing NODE_7467_length_445_cov_0.765432:1-445 [pilon] NODE_11417_length_267_cov_13.924658:1-267 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 50, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11417_length_267_cov_13.924658:1-267 [pilon] Processing NODE_5458_length_580_cov_15.379085:1-580 [pilon] NODE_7834_length_426_cov_0.708197:1-426 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 426 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7834_length_426_cov_0.708197:1-426 [pilon] Processing NODE_678_length_1720_cov_19.862414:1-1720 [pilon] NODE_7038_length_468_cov_29.691643:1-468 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 223, Coverage: 17, minDepth: 5 [pilon] Confirmed 330 of 468 bases (70.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7038_length_468_cov_29.691643:1-468 [pilon] Processing NODE_6201_length_524_cov_13.339950:1-524 [pilon] NODE_15057_length_239_cov_78.516949:1-239 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 253, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 239 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15057_length_239_cov_78.516949:1-239 [pilon] Processing NODE_7947_length_420_cov_21.317726:1-420 [pilon] NODE_10900_length_288_cov_20.161677:1-288 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 67, Coverage: 8, minDepth: 5 [pilon] Confirmed 162 of 288 bases (56.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10900_length_288_cov_20.161677:1-288 [pilon] Processing NODE_10869_length_289_cov_13.238095:1-289 [pilon] NODE_8328_length_403_cov_8.070922:1-403 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 62, Coverage: 5, minDepth: 5 [pilon] Confirmed 253 of 403 bases (62.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8328_length_403_cov_8.070922:1-403 [pilon] Processing NODE_6467_length_506_cov_3.062338:1-506 [pilon] NODE_7437_length_446_cov_41.581538:1-446 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 299, Coverage: 36, minDepth: 9 [pilon] Confirmed 293 of 446 bases (65.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7437_length_446_cov_41.581538:1-446 [pilon] Processing NODE_10542_length_303_cov_18.527473:1-303 [pilon] NODE_6848_length_481_cov_0.658333:1-481 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 7, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 481 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6848_length_481_cov_0.658333:1-481 [pilon] Processing NODE_5180_length_603_cov_13.786307:1-603 [pilon] NODE_439_length_1983_cov_3.356069:1-1983 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 155, Coverage: 10, minDepth: 5 [pilon] Confirmed 1735 of 1983 bases (87.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_439_length_1983_cov_3.356069:1-1983 [pilon] Processing NODE_381_length_2072_cov_23.517683:1-2072 [pilon] NODE_450_length_1972_cov_16.837385:1-1972 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 848, Coverage: 48, minDepth: 12 [pilon] Confirmed 1506 of 1972 bases (76.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_450_length_1972_cov_16.837385:1-1972 [pilon] Processing NODE_13505_length_243_cov_18.336066:1-243 [pilon] NODE_2938_length_884_cov_5.600262:1-884 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 100, Coverage: 15, minDepth: 5 [pilon] Confirmed 737 of 884 bases (83.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2938_length_884_cov_5.600262:1-884 [pilon] Processing NODE_13981_length_243_cov_14.270492:1-243 [pilon] NODE_5712_length_562_cov_36.591837:1-562 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 378, Coverage: 59, minDepth: 15 [pilon] Confirmed 497 of 562 bases (88.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5712_length_562_cov_36.591837:1-562 [pilon] Processing NODE_11592_length_261_cov_7.178571:1-261 [pilon] NODE_12662_length_243_cov_26.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12662_length_243_cov_26.688525:1-243 [pilon] Processing NODE_12536_length_243_cov_28.524590:1-243 [pilon] NODE_10019_length_324_cov_24.019704:1-324 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 75, Coverage: 6, minDepth: 5 [pilon] Confirmed 160 of 324 bases (49.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10019_length_324_cov_24.019704:1-324 [pilon] Processing NODE_3618_length_766_cov_13.037209:1-766 [pilon] NODE_3440_length_793_cov_2.544643:1-793 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 46, Coverage: 7, minDepth: 5 [pilon] Confirmed 653 of 793 bases (82.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3440_length_793_cov_2.544643:1-793 [pilon] Processing NODE_5096_length_610_cov_49.979550:1-610 [pilon] NODE_7502_length_443_cov_13.208075:1-443 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 111, Coverage: 16, minDepth: 5 [pilon] Confirmed 350 of 443 bases (79.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7502_length_443_cov_13.208075:1-443 [pilon] Processing NODE_5561_length_573_cov_15.110619:1-573 [pilon] NODE_278_length_2287_cov_16.821791:1-2287 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 809, Coverage: 42, minDepth: 11 [pilon] Confirmed 1595 of 2287 bases (69.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_278_length_2287_cov_16.821791:1-2287 [pilon] Processing NODE_5322_length_591_cov_2.325532:1-591 [pilon] NODE_9086_length_362_cov_26.730290:1-362 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 121, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 362 bases (35.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9086_length_362_cov_26.730290:1-362 [pilon] Processing NODE_5954_length_544_cov_17.581560:1-544 [pilon] NODE_678_length_1720_cov_19.862414:1-1720 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 764, Coverage: 49, minDepth: 12 [pilon] Confirmed 1646 of 1720 bases (95.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_678_length_1720_cov_19.862414:1-1720 [pilon] Processing NODE_5100_length_610_cov_30.124744:1-610 [pilon] NODE_5140_length_606_cov_36.455670:1-606 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 480, Coverage: 48, minDepth: 12 [pilon] Confirmed 391 of 606 bases (64.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5140_length_606_cov_36.455670:1-606 [pilon] Processing NODE_11776_length_254_cov_18.789474:1-254 [pilon] NODE_12136_length_243_cov_40.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 106, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12136_length_243_cov_40.868852:1-243 [pilon] Processing NODE_7031_length_469_cov_24.497126:1-469 [pilon] NODE_8460_length_396_cov_15.516364:1-396 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 110, Coverage: 3, minDepth: 5 [pilon] Confirmed 140 of 396 bases (35.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8460_length_396_cov_15.516364:1-396 [pilon] Processing NODE_1237_length_1372_cov_1.777778:1-1372 [pilon] NODE_7467_length_445_cov_0.765432:1-445 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 13, Coverage: 4, minDepth: 5 [pilon] Confirmed 223 of 445 bases (50.11%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7467_length_445_cov_0.765432:1-445 [pilon] Processing NODE_6753_length_486_cov_18.539726:1-486 [pilon] NODE_1032_length_1479_cov_2.670839:1-1479 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 94, Coverage: 8, minDepth: 5 [pilon] Confirmed 1194 of 1479 bases (80.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1032_length_1479_cov_2.670839:1-1479 [pilon] Processing NODE_6900_length_477_cov_23.314607:1-477 [pilon] NODE_13414_length_243_cov_19.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13414_length_243_cov_19.155738:1-243 [pilon] Processing NODE_6257_length_520_cov_33.721805:1-520 [pilon] NODE_2009_length_1084_cov_33.442368:1-1084 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 740, Coverage: 80, minDepth: 20 [pilon] Confirmed 684 of 1084 bases (63.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2009_length_1084_cov_33.442368:1-1084 [pilon] Processing NODE_11103_length_279_cov_24.702532:1-279 [pilon] NODE_7539_length_441_cov_20.684375:1-441 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 162, Coverage: 22, minDepth: 6 [pilon] Confirmed 363 of 441 bases (82.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7539_length_441_cov_20.684375:1-441 [pilon] Processing NODE_5606_length_570_cov_17.534521:1-570 [pilon] NODE_7362_length_450_cov_16.650456:1-450 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 147, Coverage: 16, minDepth: 5 [pilon] Confirmed 324 of 450 bases (72.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7362_length_450_cov_16.650456:1-450 [pilon] Processing NODE_12462_length_243_cov_29.696721:1-243 [pilon] NODE_10542_length_303_cov_18.527473:1-303 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 77, Coverage: 3, minDepth: 5 [pilon] Confirmed 116 of 303 bases (38.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10542_length_303_cov_18.527473:1-303 [pilon] Processing NODE_8058_length_415_cov_10.023810:1-415 [pilon] NODE_12536_length_243_cov_28.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12536_length_243_cov_28.524590:1-243 [pilon] Processing NODE_11322_length_270_cov_26.281879:1-270 [pilon] NODE_10869_length_289_cov_13.238095:1-289 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 289 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10869_length_289_cov_13.238095:1-289 [pilon] Processing NODE_5663_length_566_cov_2.197753:1-566 [pilon] NODE_7947_length_420_cov_21.317726:1-420 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 142, Coverage: 27, minDepth: 7 [pilon] Confirmed 329 of 420 bases (78.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7947_length_420_cov_21.317726:1-420 [pilon] Processing NODE_6156_length_528_cov_2.302211:1-528 [pilon] NODE_8453_length_396_cov_20.345455:1-396 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 129, Coverage: 17, minDepth: 5 [pilon] Confirmed 317 of 396 bases (80.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8453_length_396_cov_20.345455:1-396 [pilon] Processing NODE_11164_length_276_cov_37.645161:1-276 [pilon] NODE_5180_length_603_cov_13.786307:1-603 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 154, Coverage: 22, minDepth: 6 [pilon] Confirmed 497 of 603 bases (82.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5180_length_603_cov_13.786307:1-603 [pilon] Processing NODE_14106_length_243_cov_13.434426:1-243 [pilon] NODE_11592_length_261_cov_7.178571:1-261 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11592_length_261_cov_7.178571:1-261 [pilon] Processing NODE_3253_length_823_cov_25.700855:1-823 [pilon] NODE_13505_length_243_cov_18.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13505_length_243_cov_18.336066:1-243 [pilon] Processing NODE_10197_length_318_cov_6.522843:1-318 [pilon] NODE_5561_length_573_cov_15.110619:1-573 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 225, Coverage: 22, minDepth: 6 [pilon] Confirmed 302 of 573 bases (52.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5561_length_573_cov_15.110619:1-573 [pilon] Processing NODE_3118_length_848_cov_17.452545:1-848 [pilon] NODE_6201_length_524_cov_13.339950:1-524 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 143, Coverage: 12, minDepth: 5 [pilon] Confirmed 308 of 524 bases (58.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6201_length_524_cov_13.339950:1-524 [pilon] Processing NODE_5852_length_551_cov_17.690698:1-551 [pilon] NODE_5458_length_580_cov_15.379085:1-580 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 173, Coverage: 17, minDepth: 5 [pilon] Confirmed 404 of 580 bases (69.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5458_length_580_cov_15.379085:1-580 [pilon] Processing NODE_759_length_1662_cov_36.730694:1-1662 [pilon] NODE_5096_length_610_cov_49.979550:1-610 log: [pilon] frags shovill.bam: coverage 95 [pilon] Total Reads: 636, Coverage: 95, minDepth: 24 [pilon] Confirmed 513 of 610 bases (84.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5096_length_610_cov_49.979550:1-610 [pilon] Processing NODE_1688_length_1186_cov_35.432864:1-1186 [pilon] NODE_3618_length_766_cov_13.037209:1-766 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 196, Coverage: 22, minDepth: 6 [pilon] Confirmed 678 of 766 bases (88.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3618_length_766_cov_13.037209:1-766 [pilon] Processing NODE_10928_length_288_cov_1.544910:1-288 [pilon] NODE_6467_length_506_cov_3.062338:1-506 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 29, Coverage: 7, minDepth: 5 [pilon] Confirmed 259 of 506 bases (51.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6467_length_506_cov_3.062338:1-506 [pilon] Processing NODE_6073_length_534_cov_13.636804:1-534 [pilon] NODE_381_length_2072_cov_23.517683:1-2072 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 1088, Coverage: 59, minDepth: 15 [pilon] Confirmed 1713 of 2072 bases (82.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_381_length_2072_cov_23.517683:1-2072 [pilon] Processing NODE_6453_length_507_cov_7.753886:1-507 [pilon] NODE_7031_length_469_cov_24.497126:1-469 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 176, Coverage: 33, minDepth: 8 [pilon] Confirmed 356 of 469 bases (75.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7031_length_469_cov_24.497126:1-469 [pilon] Processing NODE_2361_length_999_cov_2.173121:1-999 [pilon] NODE_13981_length_243_cov_14.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13981_length_243_cov_14.270492:1-243 [pilon] Processing NODE_8540_length_392_cov_13.147601:1-392 [pilon] NODE_5322_length_591_cov_2.325532:1-591 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 39, Coverage: 6, minDepth: 5 [pilon] Confirmed 400 of 591 bases (67.68%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5322_length_591_cov_2.325532:1-591 [pilon] Processing NODE_1244_length_1368_cov_16.075381:1-1368 [pilon] NODE_5954_length_544_cov_17.581560:1-544 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 190, Coverage: 29, minDepth: 7 [pilon] Confirmed 474 of 544 bases (87.13%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5954_length_544_cov_17.581560:1-544 [pilon] Processing NODE_6724_length_489_cov_1.423913:1-489 [pilon] NODE_6753_length_486_cov_18.539726:1-486 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 154, Coverage: 24, minDepth: 6 [pilon] Confirmed 370 of 486 bases (76.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6753_length_486_cov_18.539726:1-486 [pilon] Processing NODE_7283_length_455_cov_24.622754:1-455 [pilon] NODE_6900_length_477_cov_23.314607:1-477 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 183, Coverage: 26, minDepth: 7 [pilon] Confirmed 327 of 477 bases (68.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6900_length_477_cov_23.314607:1-477 [pilon] Processing NODE_4668_length_647_cov_1.001901:1-647 [pilon] NODE_5606_length_570_cov_17.534521:1-570 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 178, Coverage: 21, minDepth: 5 [pilon] Confirmed 381 of 570 bases (66.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5606_length_570_cov_17.534521:1-570 [pilon] Processing NODE_5613_length_569_cov_23.680804:1-569 [pilon] NODE_11776_length_254_cov_18.789474:1-254 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 55, Coverage: 3, minDepth: 5 [pilon] Confirmed 68 of 254 bases (26.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11776_length_254_cov_18.789474:1-254 [pilon] Processing NODE_5275_length_594_cov_26.706131:1-594 [pilon] NODE_14106_length_243_cov_13.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14106_length_243_cov_13.434426:1-243 [pilon] Processing NODE_6751_length_486_cov_21.704110:1-486 [pilon] NODE_12462_length_243_cov_29.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12462_length_243_cov_29.696721:1-243 [pilon] Processing NODE_8077_length_414_cov_19.000000:1-414 [pilon] NODE_5100_length_610_cov_30.124744:1-610 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 359, Coverage: 45, minDepth: 11 [pilon] Confirmed 464 of 610 bases (76.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5100_length_610_cov_30.124744:1-610 [pilon] Processing NODE_13506_length_243_cov_18.327869:1-243 [pilon] NODE_11322_length_270_cov_26.281879:1-270 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 84, Coverage: 6, minDepth: 5 [pilon] Confirmed 194 of 270 bases (71.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11322_length_270_cov_26.281879:1-270 [pilon] Processing NODE_13444_length_243_cov_18.885246:1-243 [pilon] NODE_6073_length_534_cov_13.636804:1-534 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 125, Coverage: 20, minDepth: 5 [pilon] Confirmed 412 of 534 bases (77.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6073_length_534_cov_13.636804:1-534 [pilon] Processing NODE_13408_length_243_cov_19.245902:1-243 [pilon] NODE_11103_length_279_cov_24.702532:1-279 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 77, Coverage: 6, minDepth: 5 [pilon] Confirmed 202 of 279 bases (72.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11103_length_279_cov_24.702532:1-279 [pilon] Processing NODE_12916_length_243_cov_23.909836:1-243 [pilon] NODE_11164_length_276_cov_37.645161:1-276 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 121, Coverage: 8, minDepth: 5 [pilon] Confirmed 185 of 276 bases (67.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11164_length_276_cov_37.645161:1-276 [pilon] Processing NODE_14375_length_243_cov_11.245902:1-243 [pilon] NODE_5663_length_566_cov_2.197753:1-566 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 29, Coverage: 7, minDepth: 5 [pilon] Confirmed 358 of 566 bases (63.25%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5663_length_566_cov_2.197753:1-566 [pilon] Processing NODE_10387_length_309_cov_18.106383:1-309 [pilon] NODE_8058_length_415_cov_10.023810:1-415 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 64, Coverage: 8, minDepth: 5 [pilon] Confirmed 284 of 415 bases (68.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8058_length_415_cov_10.023810:1-415 [pilon] Processing NODE_2429_length_983_cov_24.779582:1-983 [pilon] NODE_1237_length_1372_cov_1.777778:1-1372 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 77, Coverage: 7, minDepth: 5 [pilon] Confirmed 843 of 1372 bases (61.44%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1237_length_1372_cov_1.777778:1-1372 [pilon] NODE_5852_length_551_cov_17.690698:1-551 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 162, Coverage: 23, minDepth: 6 [pilon] Confirmed 477 of 551 bases (86.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_5601_length_570_cov_24.928731:1-570 [pilon] Finished processing NODE_5852_length_551_cov_17.690698:1-551 [pilon] Processing NODE_6887_length_478_cov_22.526611:1-478 [pilon] NODE_6257_length_520_cov_33.721805:1-520 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 375, Coverage: 46, minDepth: 12 [pilon] Confirmed 261 of 520 bases (50.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6257_length_520_cov_33.721805:1-520 [pilon] Processing NODE_7692_length_432_cov_52.913183:1-432 [pilon] NODE_6156_length_528_cov_2.302211:1-528 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 295 of 528 bases (55.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6156_length_528_cov_2.302211:1-528 [pilon] Processing NODE_14673_length_243_cov_8.770492:1-243 [pilon] NODE_3253_length_823_cov_25.700855:1-823 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 392, Coverage: 39, minDepth: 10 [pilon] Confirmed 731 of 823 bases (88.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3253_length_823_cov_25.700855:1-823 [pilon] Processing NODE_6949_length_474_cov_19.858357:1-474 [pilon] NODE_10197_length_318_cov_6.522843:1-318 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 318 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10197_length_318_cov_6.522843:1-318 [pilon] Processing NODE_14829_length_243_cov_7.418033:1-243 [pilon] NODE_10928_length_288_cov_1.544910:1-288 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 11, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10928_length_288_cov_1.544910:1-288 [pilon] Processing NODE_9251_length_356_cov_6.417021:1-356 [pilon] NODE_1688_length_1186_cov_35.432864:1-1186 log: [pilon] frags shovill.bam: coverage 89 [pilon] Total Reads: 930, Coverage: 89, minDepth: 22 [pilon] Confirmed 1054 of 1186 bases (88.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1688_length_1186_cov_35.432864:1-1186 [pilon] Processing NODE_4619_length_651_cov_6.992453:1-651 [pilon] NODE_3118_length_848_cov_17.452545:1-848 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 307, Coverage: 33, minDepth: 8 [pilon] Confirmed 665 of 848 bases (78.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3118_length_848_cov_17.452545:1-848 [pilon] Processing NODE_3596_length_769_cov_32.723765:1-769 [pilon] NODE_759_length_1662_cov_36.730694:1-1662 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 1260, Coverage: 86, minDepth: 22 [pilon] Confirmed 1282 of 1662 bases (77.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_759_length_1662_cov_36.730694:1-1662 [pilon] Processing NODE_9791_length_334_cov_61.596244:1-334 [pilon] NODE_8540_length_392_cov_13.147601:1-392 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 83, Coverage: 5, minDepth: 5 [pilon] Confirmed 175 of 392 bases (44.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8540_length_392_cov_13.147601:1-392 [pilon] Processing NODE_9577_length_342_cov_25.031674:1-342 [pilon] NODE_6453_length_507_cov_7.753886:1-507 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 65, Coverage: 8, minDepth: 5 [pilon] Confirmed 270 of 507 bases (53.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6453_length_507_cov_7.753886:1-507 [pilon] Processing NODE_57_length_3495_cov_23.456728:1-3495 [pilon] NODE_2361_length_999_cov_2.173121:1-999 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 58, Coverage: 8, minDepth: 5 [pilon] Confirmed 657 of 999 bases (65.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2361_length_999_cov_2.173121:1-999 [pilon] Processing NODE_7618_length_436_cov_60.247619:1-436 [pilon] NODE_13408_length_243_cov_19.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13408_length_243_cov_19.245902:1-243 [pilon] Processing NODE_3053_length_862_cov_9.296896:1-862 [pilon] NODE_6751_length_486_cov_21.704110:1-486 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 177, Coverage: 25, minDepth: 6 [pilon] Confirmed 347 of 486 bases (71.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6751_length_486_cov_21.704110:1-486 [pilon] Processing NODE_5974_length_543_cov_14.246445:1-543 [pilon] NODE_1244_length_1368_cov_16.075381:1-1368 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 554, Coverage: 31, minDepth: 8 [pilon] Confirmed 1051 of 1368 bases (76.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1244_length_1368_cov_16.075381:1-1368 [pilon] Processing NODE_10227_length_315_cov_37.237113:1-315 [pilon] NODE_14375_length_243_cov_11.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14375_length_243_cov_11.245902:1-243 [pilon] Processing NODE_11353_length_270_cov_10.429530:1-270 [pilon] NODE_4668_length_647_cov_1.001901:1-647 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 276 of 647 bases (42.66%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4668_length_647_cov_1.001901:1-647 [pilon] Processing NODE_9367_length_351_cov_21.660870:1-351 [pilon] NODE_6724_length_489_cov_1.423913:1-489 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 236 of 489 bases (48.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6724_length_489_cov_1.423913:1-489 [pilon] Processing NODE_12372_length_243_cov_31.663934:1-243 [pilon] NODE_7283_length_455_cov_24.622754:1-455 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 183, Coverage: 26, minDepth: 7 [pilon] Confirmed 316 of 455 bases (69.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7283_length_455_cov_24.622754:1-455 [pilon] Processing NODE_237_length_2390_cov_12.184222:1-2390 [pilon] NODE_8077_length_414_cov_19.000000:1-414 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 101, Coverage: 14, minDepth: 5 [pilon] Confirmed 240 of 414 bases (57.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8077_length_414_cov_19.000000:1-414 [pilon] Processing NODE_4324_length_678_cov_4.314183:1-678 [pilon] NODE_13444_length_243_cov_18.885246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13444_length_243_cov_18.885246:1-243 [pilon] Processing NODE_4456_length_665_cov_25.156250:1-665 [pilon] NODE_14829_length_243_cov_7.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14829_length_243_cov_7.418033:1-243 [pilon] Processing NODE_8568_length_390_cov_12.315985:1-390 [pilon] NODE_13506_length_243_cov_18.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13506_length_243_cov_18.327869:1-243 [pilon] Processing NODE_11292_length_273_cov_6.184211:1-273 [pilon] NODE_5275_length_594_cov_26.706131:1-594 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 259, Coverage: 30, minDepth: 8 [pilon] Confirmed 444 of 594 bases (74.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5275_length_594_cov_26.706131:1-594 [pilon] Processing NODE_3431_length_794_cov_7.392273:1-794 [pilon] NODE_5613_length_569_cov_23.680804:1-569 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 260, Coverage: 39, minDepth: 10 [pilon] Confirmed 449 of 569 bases (78.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5613_length_569_cov_23.680804:1-569 [pilon] Processing NODE_5130_length_608_cov_0.659138:1-608 [pilon] NODE_12916_length_243_cov_23.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12916_length_243_cov_23.909836:1-243 [pilon] Processing NODE_3248_length_824_cov_21.716927:1-824 [pilon] NODE_10387_length_309_cov_18.106383:1-309 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 309 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10387_length_309_cov_18.106383:1-309 [pilon] Processing NODE_1274_length_1352_cov_20.991877:1-1352 [pilon] NODE_2429_length_983_cov_24.779582:1-983 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 493, Coverage: 55, minDepth: 14 [pilon] Confirmed 840 of 983 bases (85.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2429_length_983_cov_24.779582:1-983 [pilon] Processing NODE_7020_length_470_cov_21.982808:1-470 [pilon] NODE_7692_length_432_cov_52.913183:1-432 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 394, Coverage: 68, minDepth: 17 [pilon] Confirmed 359 of 432 bases (83.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7692_length_432_cov_52.913183:1-432 [pilon] Processing NODE_9839_length_333_cov_10.358491:1-333 [pilon] NODE_5601_length_570_cov_24.928731:1-570 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 272, Coverage: 41, minDepth: 10 [pilon] Confirmed 379 of 570 bases (66.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5601_length_570_cov_24.928731:1-570 [pilon] Processing NODE_2666_length_934_cov_49.790898:1-934 [pilon] NODE_6887_length_478_cov_22.526611:1-478 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 229, Coverage: 42, minDepth: 11 [pilon] Confirmed 376 of 478 bases (78.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6887_length_478_cov_22.526611:1-478 [pilon] Processing NODE_10480_length_306_cov_7.967568:1-306 [pilon] NODE_9251_length_356_cov_6.417021:1-356 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 36, Coverage: 4, minDepth: 5 [pilon] Confirmed 193 of 356 bases (54.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9251_length_356_cov_6.417021:1-356 [pilon] Processing NODE_12188_length_243_cov_37.213115:1-243 [pilon] NODE_6949_length_474_cov_19.858357:1-474 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 151, Coverage: 25, minDepth: 6 [pilon] Confirmed 334 of 474 bases (70.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6949_length_474_cov_19.858357:1-474 [pilon] Processing NODE_12719_length_243_cov_25.983607:1-243 [pilon] NODE_14673_length_243_cov_8.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14673_length_243_cov_8.770492:1-243 [pilon] Processing NODE_11608_length_260_cov_4.294964:1-260 [pilon] NODE_5974_length_543_cov_14.246445:1-543 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 132, Coverage: 19, minDepth: 5 [pilon] Confirmed 422 of 543 bases (77.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5974_length_543_cov_14.246445:1-543 [pilon] Processing NODE_1525_length_1250_cov_2.385297:1-1250 [pilon] NODE_4619_length_651_cov_6.992453:1-651 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 88, Coverage: 7, minDepth: 5 [pilon] Confirmed 341 of 651 bases (52.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4619_length_651_cov_6.992453:1-651 [pilon] Processing NODE_12167_length_243_cov_38.319672:1-243 [pilon] NODE_9791_length_334_cov_61.596244:1-334 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 296, Coverage: 49, minDepth: 12 [pilon] Confirmed 307 of 334 bases (91.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9791_length_334_cov_61.596244:1-334 [pilon] Processing NODE_4533_length_659_cov_0.793680:1-659 [pilon] NODE_3053_length_862_cov_9.296896:1-862 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 160, Coverage: 20, minDepth: 5 [pilon] Confirmed 622 of 862 bases (72.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3053_length_862_cov_9.296896:1-862 [pilon] Processing NODE_1369_length_1310_cov_29.030278:1-1310 [pilon] NODE_3596_length_769_cov_32.723765:1-769 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 505, Coverage: 65, minDepth: 16 [pilon] Confirmed 700 of 769 bases (91.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3596_length_769_cov_32.723765:1-769 [pilon] Processing NODE_13412_length_243_cov_19.172131:1-243 [pilon] NODE_11353_length_270_cov_10.429530:1-270 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 41, Coverage: 3, minDepth: 5 [pilon] Confirmed 72 of 270 bases (26.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11353_length_270_cov_10.429530:1-270 [pilon] Processing NODE_10943_length_286_cov_16.115152:1-286 [pilon] NODE_9577_length_342_cov_25.031674:1-342 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 132, Coverage: 15, minDepth: 5 [pilon] Confirmed 286 of 342 bases (83.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9577_length_342_cov_25.031674:1-342 [pilon] Processing NODE_2548_length_957_cov_3.338517:1-957 [pilon] NODE_7618_length_436_cov_60.247619:1-436 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 449, Coverage: 78, minDepth: 20 [pilon] Confirmed 372 of 436 bases (85.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7618_length_436_cov_60.247619:1-436 [pilon] Processing NODE_8425_length_398_cov_22.797834:1-398 [pilon] NODE_8568_length_390_cov_12.315985:1-390 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 216 of 390 bases (55.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8568_length_390_cov_12.315985:1-390 [pilon] Processing NODE_13001_length_243_cov_22.901639:1-243 [pilon] NODE_10227_length_315_cov_37.237113:1-315 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 150, Coverage: 7, minDepth: 5 [pilon] Confirmed 165 of 315 bases (52.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10227_length_315_cov_37.237113:1-315 [pilon] Processing NODE_3378_length_800_cov_30.932253:1-800 [pilon] NODE_12372_length_243_cov_31.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12372_length_243_cov_31.663934:1-243 [pilon] Processing NODE_10343_length_312_cov_10.282723:1-312 [pilon] NODE_57_length_3495_cov_23.456728:1-3495 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 1956, Coverage: 65, minDepth: 16 [pilon] Confirmed 3104 of 3495 bases (88.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_57_length_3495_cov_23.456728:1-3495 [pilon] Processing NODE_8373_length_402_cov_1.042705:1-402 [pilon] NODE_9367_length_351_cov_21.660870:1-351 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 90, Coverage: 2, minDepth: 5 [pilon] Confirmed 111 of 351 bases (31.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9367_length_351_cov_21.660870:1-351 [pilon] Processing NODE_15072_length_236_cov_25.965217:1-236 [pilon] NODE_4324_length_678_cov_4.314183:1-678 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 60, Coverage: 12, minDepth: 5 [pilon] Confirmed 549 of 678 bases (80.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4324_length_678_cov_4.314183:1-678 [pilon] Processing NODE_14373_length_243_cov_11.262295:1-243 [pilon] NODE_237_length_2390_cov_12.184222:1-2390 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 758, Coverage: 30, minDepth: 8 [pilon] Confirmed 2168 of 2390 bases (90.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_237_length_2390_cov_12.184222:1-2390 [pilon] Processing NODE_1323_length_1332_cov_2.658960:1-1332 [pilon] NODE_3431_length_794_cov_7.392273:1-794 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 109, Coverage: 13, minDepth: 5 [pilon] Confirmed 606 of 794 bases (76.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3431_length_794_cov_7.392273:1-794 [pilon] Processing NODE_10570_length_303_cov_5.456044:1-303 [pilon] NODE_4456_length_665_cov_25.156250:1-665 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 369, Coverage: 36, minDepth: 9 [pilon] Confirmed 405 of 665 bases (60.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4456_length_665_cov_25.156250:1-665 [pilon] Processing NODE_13304_length_243_cov_20.213115:1-243 [pilon] NODE_11292_length_273_cov_6.184211:1-273 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 28, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11292_length_273_cov_6.184211:1-273 [pilon] Processing NODE_5175_length_603_cov_30.000000:1-603 [pilon] NODE_5130_length_608_cov_0.659138:1-608 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 209 of 608 bases (34.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5130_length_608_cov_0.659138:1-608 [pilon] Processing NODE_13104_length_243_cov_21.909836:1-243 [pilon] NODE_1525_length_1250_cov_2.385297:1-1250 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 87, Coverage: 9, minDepth: 5 [pilon] Confirmed 951 of 1250 bases (76.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1525_length_1250_cov_2.385297:1-1250 [pilon] Processing NODE_8873_length_373_cov_21.051587:1-373 [pilon] NODE_1369_length_1310_cov_29.030278:1-1310 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 864, Coverage: 44, minDepth: 11 [pilon] Confirmed 1065 of 1310 bases (81.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1369_length_1310_cov_29.030278:1-1310 [pilon] Processing NODE_7939_length_420_cov_36.685619:1-420 [pilon] NODE_7020_length_470_cov_21.982808:1-470 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 178, Coverage: 13, minDepth: 5 [pilon] Confirmed 298 of 470 bases (63.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7020_length_470_cov_21.982808:1-470 [pilon] Processing NODE_11960_length_246_cov_43.224000:1-246 [pilon] NODE_10480_length_306_cov_7.967568:1-306 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 37, Coverage: 4, minDepth: 5 [pilon] Confirmed 121 of 306 bases (39.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10480_length_306_cov_7.967568:1-306 [pilon] Processing NODE_3979_length_717_cov_2.270134:1-717 [pilon] NODE_3248_length_824_cov_21.716927:1-824 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 375, Coverage: 35, minDepth: 9 [pilon] Confirmed 666 of 824 bases (80.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3248_length_824_cov_21.716927:1-824 [pilon] Processing NODE_9233_length_357_cov_5.322034:1-357 [pilon] NODE_9839_length_333_cov_10.358491:1-333 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 47, Coverage: 2, minDepth: 5 [pilon] Confirmed 77 of 333 bases (23.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9839_length_333_cov_10.358491:1-333 [pilon] Processing NODE_6984_length_473_cov_0.687500:1-473 [pilon] NODE_12188_length_243_cov_37.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 109, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12188_length_243_cov_37.213115:1-243 [pilon] Processing NODE_3641_length_763_cov_2.971963:1-763 [pilon] NODE_1274_length_1352_cov_20.991877:1-1352 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 624, Coverage: 45, minDepth: 11 [pilon] Confirmed 1087 of 1352 bases (80.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1274_length_1352_cov_20.991877:1-1352 [pilon] Processing NODE_259_length_2309_cov_3.734918:1-2309 [pilon] NODE_10943_length_286_cov_16.115152:1-286 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 57, Coverage: 7, minDepth: 5 [pilon] Confirmed 202 of 286 bases (70.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10943_length_286_cov_16.115152:1-286 [pilon] Processing NODE_4362_length_675_cov_1.137184:1-675 [pilon] NODE_12719_length_243_cov_25.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12719_length_243_cov_25.983607:1-243 [pilon] Processing NODE_8324_length_403_cov_21.035461:1-403 [pilon] NODE_11608_length_260_cov_4.294964:1-260 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 260 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11608_length_260_cov_4.294964:1-260 [pilon] Processing NODE_14731_length_243_cov_8.327869:1-243 [pilon] NODE_2666_length_934_cov_49.790898:1-934 log: [pilon] frags shovill.bam: coverage 103 [pilon] Total Reads: 935, Coverage: 103, minDepth: 26 [pilon] Confirmed 825 of 934 bases (88.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2666_length_934_cov_49.790898:1-934 [pilon] Processing NODE_8185_length_409_cov_2.482639:1-409 [pilon] NODE_4533_length_659_cov_0.793680:1-659 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 109 of 659 bases (16.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4533_length_659_cov_0.793680:1-659 [pilon] Processing NODE_6187_length_525_cov_22.440594:1-525 [pilon] NODE_13412_length_243_cov_19.172131:1-243 log: [pilon] NODE_13001_length_243_cov_22.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13001_length_243_cov_22.901639:1-243 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_11154_length_277_cov_18.108974:1-277 [pilon] Finished processing NODE_13412_length_243_cov_19.172131:1-243 [pilon] Processing NODE_8620_length_387_cov_21.770677:1-387 [pilon] NODE_12167_length_243_cov_38.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 95, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12167_length_243_cov_38.319672:1-243 [pilon] Processing NODE_5481_length_579_cov_7.312227:1-579 [pilon] NODE_2548_length_957_cov_3.338517:1-957 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 71, Coverage: 9, minDepth: 5 [pilon] Confirmed 617 of 957 bases (64.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2548_length_957_cov_3.338517:1-957 [pilon] Processing NODE_6682_length_492_cov_8.964960:1-492 [pilon] NODE_8425_length_398_cov_22.797834:1-398 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 128, Coverage: 15, minDepth: 5 [pilon] Confirmed 262 of 398 bases (65.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8425_length_398_cov_22.797834:1-398 [pilon] Processing NODE_8255_length_406_cov_10.340351:1-406 [pilon] NODE_8873_length_373_cov_21.051587:1-373 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 115, Coverage: 17, minDepth: 5 [pilon] Confirmed 238 of 373 bases (63.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8873_length_373_cov_21.051587:1-373 [pilon] Processing NODE_13260_length_243_cov_20.524590:1-243 [pilon] NODE_10343_length_312_cov_10.282723:1-312 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 48, Coverage: 9, minDepth: 5 [pilon] Confirmed 214 of 312 bases (68.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10343_length_312_cov_10.282723:1-312 [pilon] Processing NODE_8447_length_397_cov_11.333333:1-397 [pilon] NODE_3378_length_800_cov_30.932253:1-800 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 501, Coverage: 60, minDepth: 15 [pilon] Confirmed 703 of 800 bases (87.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3378_length_800_cov_30.932253:1-800 [pilon] Processing NODE_4611_length_651_cov_50.939623:1-651 [pilon] NODE_7939_length_420_cov_36.685619:1-420 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 269, Coverage: 46, minDepth: 12 [pilon] Confirmed 340 of 420 bases (80.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7939_length_420_cov_36.685619:1-420 [pilon] Processing NODE_10319_length_312_cov_23.214660:1-312 [pilon] NODE_15072_length_236_cov_25.965217:1-236 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 70, Coverage: 4, minDepth: 5 [pilon] Confirmed 105 of 236 bases (44.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15072_length_236_cov_25.965217:1-236 [pilon] Processing NODE_4657_length_648_cov_0.681214:1-648 [pilon] NODE_8373_length_402_cov_1.042705:1-402 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 196 of 402 bases (48.76%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8373_length_402_cov_1.042705:1-402 [pilon] Processing NODE_13596_length_243_cov_17.532787:1-243 [pilon] NODE_4362_length_675_cov_1.137184:1-675 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 254 of 675 bases (37.63%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4362_length_675_cov_1.137184:1-675 [pilon] Processing NODE_2502_length_967_cov_10.983452:1-967 [pilon] NODE_14373_length_243_cov_11.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14373_length_243_cov_11.262295:1-243 [pilon] Processing NODE_8412_length_399_cov_14.248201:1-399 [pilon] NODE_1323_length_1332_cov_2.658960:1-1332 log: [pilon] NODE_13304_length_243_cov_20.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13304_length_243_cov_20.213115:1-243 [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 98, Coverage: 9, minDepth: 5 [pilon] Confirmed 893 of 1332 bases (67.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_9821_length_333_cov_21.009434:1-333 [pilon] Finished processing NODE_1323_length_1332_cov_2.658960:1-1332 [pilon] Processing NODE_9893_length_330_cov_20.325359:1-330 [pilon] NODE_13104_length_243_cov_21.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13104_length_243_cov_21.909836:1-243 [pilon] Processing NODE_4068_length_709_cov_1.222789:1-709 [pilon] NODE_10570_length_303_cov_5.456044:1-303 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 303 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10570_length_303_cov_5.456044:1-303 [pilon] Processing NODE_11649_length_258_cov_15.525547:1-258 [pilon] NODE_5175_length_603_cov_30.000000:1-603 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 324, Coverage: 47, minDepth: 12 [pilon] Confirmed 512 of 603 bases (84.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5175_length_603_cov_30.000000:1-603 [pilon] Processing NODE_1793_length_1148_cov_16.812074:1-1148 [pilon] NODE_11154_length_277_cov_18.108974:1-277 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 60, Coverage: 6, minDepth: 5 [pilon] Confirmed 169 of 277 bases (61.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11154_length_277_cov_18.108974:1-277 [pilon] Processing NODE_3358_length_803_cov_32.438416:1-803 [pilon] NODE_6984_length_473_cov_0.687500:1-473 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 3 of 473 bases (0.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6984_length_473_cov_0.687500:1-473 [pilon] Processing NODE_8074_length_414_cov_21.498294:1-414 [pilon] NODE_3641_length_763_cov_2.971963:1-763 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 45, Coverage: 7, minDepth: 5 [pilon] Confirmed 425 of 763 bases (55.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3641_length_763_cov_2.971963:1-763 [pilon] Processing NODE_2498_length_968_cov_15.927981:1-968 [pilon] NODE_3979_length_717_cov_2.270134:1-717 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 48, Coverage: 8, minDepth: 5 [pilon] Confirmed 556 of 717 bases (77.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3979_length_717_cov_2.270134:1-717 [pilon] Processing NODE_10526_length_303_cov_26.208791:1-303 [pilon] NODE_9233_length_357_cov_5.322034:1-357 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 55, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 357 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9233_length_357_cov_5.322034:1-357 [pilon] Processing NODE_7041_length_468_cov_24.216138:1-468 [pilon] NODE_11960_length_246_cov_43.224000:1-246 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 133, Coverage: 11, minDepth: 5 [pilon] Confirmed 189 of 246 bases (76.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11960_length_246_cov_43.224000:1-246 [pilon] Processing NODE_11694_length_256_cov_19.496296:1-256 [pilon] NODE_8324_length_403_cov_21.035461:1-403 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 139, Coverage: 12, minDepth: 5 [pilon] Confirmed 232 of 403 bases (57.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8324_length_403_cov_21.035461:1-403 [pilon] Processing NODE_11080_length_280_cov_13.477987:1-280 [pilon] NODE_14731_length_243_cov_8.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14731_length_243_cov_8.327869:1-243 [pilon] Processing NODE_7694_length_432_cov_36.392283:1-432 [pilon] NODE_259_length_2309_cov_3.734918:1-2309 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 219, Coverage: 12, minDepth: 5 [pilon] Confirmed 2026 of 2309 bases (87.74%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_259_length_2309_cov_3.734918:1-2309 [pilon] Processing NODE_7649_length_435_cov_20.522293:1-435 [pilon] NODE_8620_length_387_cov_21.770677:1-387 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 129, Coverage: 12, minDepth: 5 [pilon] Confirmed 223 of 387 bases (57.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8620_length_387_cov_21.770677:1-387 [pilon] Processing NODE_9370_length_351_cov_20.421739:1-351 [pilon] NODE_6187_length_525_cov_22.440594:1-525 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 191, Coverage: 36, minDepth: 9 [pilon] Confirmed 416 of 525 bases (79.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6187_length_525_cov_22.440594:1-525 [pilon] Processing NODE_11134_length_279_cov_7.379747:1-279 [pilon] NODE_8185_length_409_cov_2.482639:1-409 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 19, Coverage: 6, minDepth: 5 [pilon] Confirmed 265 of 409 bases (64.79%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8185_length_409_cov_2.482639:1-409 [pilon] Processing NODE_11850_length_252_cov_7.465649:1-252 [pilon] NODE_5481_length_579_cov_7.312227:1-579 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 92, Coverage: 11, minDepth: 5 [pilon] Confirmed 390 of 579 bases (67.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5481_length_579_cov_7.312227:1-579 [pilon] Processing NODE_9351_length_352_cov_8.792208:1-352 [pilon] NODE_13260_length_243_cov_20.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13260_length_243_cov_20.524590:1-243 [pilon] Processing NODE_14318_length_243_cov_11.704918:1-243 [pilon] NODE_10319_length_312_cov_23.214660:1-312 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 103, Coverage: 9, minDepth: 5 [pilon] Confirmed 222 of 312 bases (71.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10319_length_312_cov_23.214660:1-312 [pilon] Processing NODE_5728_length_561_cov_5.313636:1-561 [pilon] NODE_6682_length_492_cov_8.964960:1-492 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 89, Coverage: 13, minDepth: 5 [pilon] Confirmed 400 of 492 bases (81.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6682_length_492_cov_8.964960:1-492 [pilon] Processing NODE_8546_length_391_cov_32.411111:1-391 [pilon] NODE_8447_length_397_cov_11.333333:1-397 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 82, Coverage: 4, minDepth: 5 [pilon] Confirmed 133 of 397 bases (33.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8447_length_397_cov_11.333333:1-397 [pilon] Processing NODE_9947_length_327_cov_37.674757:1-327 [pilon] NODE_8255_length_406_cov_10.340351:1-406 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 291 of 406 bases (71.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8255_length_406_cov_10.340351:1-406 [pilon] Processing NODE_2999_length_873_cov_22.438830:1-873 [pilon] NODE_2502_length_967_cov_10.983452:1-967 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 202, Coverage: 20, minDepth: 5 [pilon] Confirmed 803 of 967 bases (83.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2502_length_967_cov_10.983452:1-967 [pilon] Processing NODE_9573_length_342_cov_28.389140:1-342 [pilon] NODE_3358_length_803_cov_32.438416:1-803 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 516, Coverage: 58, minDepth: 15 [pilon] Confirmed 749 of 803 bases (93.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3358_length_803_cov_32.438416:1-803 [pilon] Processing NODE_4658_length_647_cov_27.836502:1-647 [pilon] NODE_4611_length_651_cov_50.939623:1-651 log: [pilon] frags shovill.bam: coverage 94 [pilon] Total Reads: 602, Coverage: 94, minDepth: 24 [pilon] Confirmed 565 of 651 bases (86.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4611_length_651_cov_50.939623:1-651 [pilon] Processing NODE_7458_length_445_cov_39.283951:1-445 [pilon] NODE_4657_length_648_cov_0.681214:1-648 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 94 of 648 bases (14.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4657_length_648_cov_0.681214:1-648 [pilon] Processing NODE_6340_length_514_cov_20.557252:1-514 [pilon] NODE_13596_length_243_cov_17.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13596_length_243_cov_17.532787:1-243 [pilon] Processing NODE_175_length_2582_cov_16.608289:1-2582 [pilon] NODE_9893_length_330_cov_20.325359:1-330 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 95, Coverage: 5, minDepth: 5 [pilon] Confirmed 160 of 330 bases (48.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9893_length_330_cov_20.325359:1-330 [pilon] Processing NODE_12061_length_245_cov_20.814516:1-245 [pilon] NODE_9821_length_333_cov_21.009434:1-333 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 101, Coverage: 5, minDepth: 5 [pilon] Confirmed 145 of 333 bases (43.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9821_length_333_cov_21.009434:1-333 [pilon] Processing NODE_3800_length_740_cov_44.063005:1-740 [pilon] NODE_8412_length_399_cov_14.248201:1-399 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 96, Coverage: 13, minDepth: 5 [pilon] Confirmed 303 of 399 bases (75.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8412_length_399_cov_14.248201:1-399 [pilon] Processing NODE_4784_length_636_cov_25.753398:1-636 [pilon] NODE_4068_length_709_cov_1.222789:1-709 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 20, Coverage: 3, minDepth: 5 [pilon] Confirmed 227 of 709 bases (32.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4068_length_709_cov_1.222789:1-709 [pilon] Processing NODE_10220_length_316_cov_11.917949:1-316 [pilon] NODE_11649_length_258_cov_15.525547:1-258 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 46, Coverage: 6, minDepth: 5 [pilon] Confirmed 150 of 258 bases (58.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11649_length_258_cov_15.525547:1-258 [pilon] Processing NODE_12947_length_243_cov_23.450820:1-243 [pilon] NODE_14318_length_243_cov_11.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14318_length_243_cov_11.704918:1-243 [pilon] Processing NODE_12748_length_243_cov_25.598361:1-243 [pilon] NODE_1793_length_1148_cov_16.812074:1-1148 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 396, Coverage: 32, minDepth: 8 [pilon] Confirmed 1045 of 1148 bases (91.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1793_length_1148_cov_16.812074:1-1148 [pilon] Processing NODE_606_length_1802_cov_22.356336:1-1802 [pilon] NODE_2498_length_968_cov_15.927981:1-968 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 313, Coverage: 27, minDepth: 7 [pilon] Confirmed 786 of 968 bases (81.20%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2498_length_968_cov_15.927981:1-968 [pilon] Processing NODE_3343_length_806_cov_49.080292:1-806 [pilon] NODE_8074_length_414_cov_21.498294:1-414 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 164, Coverage: 11, minDepth: 5 [pilon] Confirmed 281 of 414 bases (67.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8074_length_414_cov_21.498294:1-414 [pilon] Processing NODE_8596_length_389_cov_3.701493:1-389 [pilon] NODE_11080_length_280_cov_13.477987:1-280 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 38, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 280 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11080_length_280_cov_13.477987:1-280 [pilon] Processing NODE_14189_length_243_cov_12.696721:1-243 [pilon] NODE_7041_length_468_cov_24.216138:1-468 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 205, Coverage: 14, minDepth: 5 [pilon] Confirmed 324 of 468 bases (69.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7041_length_468_cov_24.216138:1-468 [pilon] Processing NODE_8590_length_389_cov_15.126866:1-389 [pilon] NODE_10526_length_303_cov_26.208791:1-303 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 96, Coverage: 10, minDepth: 5 [pilon] Confirmed 190 of 303 bases (62.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10526_length_303_cov_26.208791:1-303 [pilon] Processing NODE_9252_length_355_cov_65.299145:1-355 [pilon] NODE_11694_length_256_cov_19.496296:1-256 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 52, Coverage: 7, minDepth: 5 [pilon] Confirmed 150 of 256 bases (58.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11694_length_256_cov_19.496296:1-256 [pilon] Processing NODE_10166_length_318_cov_22.228426:1-318 [pilon] NODE_5728_length_561_cov_5.313636:1-561 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 46, Coverage: 10, minDepth: 5 [pilon] Confirmed 410 of 561 bases (73.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5728_length_561_cov_5.313636:1-561 [pilon] Processing NODE_9932_length_328_cov_26.840580:1-328 [pilon] NODE_7694_length_432_cov_36.392283:1-432 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 231, Coverage: 32, minDepth: 8 [pilon] Confirmed 342 of 432 bases (79.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7694_length_432_cov_36.392283:1-432 [pilon] Processing NODE_1392_length_1299_cov_21.520374:1-1299 [pilon] NODE_11134_length_279_cov_7.379747:1-279 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11134_length_279_cov_7.379747:1-279 [pilon] Processing NODE_8917_length_370_cov_17.915663:1-370 [pilon] NODE_9370_length_351_cov_20.421739:1-351 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 108, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 351 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9370_length_351_cov_20.421739:1-351 [pilon] Processing NODE_10445_length_306_cov_22.140541:1-306 [pilon] NODE_7649_length_435_cov_20.522293:1-435 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 113, Coverage: 9, minDepth: 5 [pilon] Confirmed 252 of 435 bases (57.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7649_length_435_cov_20.522293:1-435 [pilon] Processing NODE_14483_length_243_cov_10.368852:1-243 [pilon] NODE_11850_length_252_cov_7.465649:1-252 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 25, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11850_length_252_cov_7.465649:1-252 [pilon] Processing NODE_14884_length_243_cov_6.877049:1-243 [pilon] NODE_9351_length_352_cov_8.792208:1-352 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 44, Coverage: 6, minDepth: 5 [pilon] Confirmed 167 of 352 bases (47.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9351_length_352_cov_8.792208:1-352 [pilon] Processing NODE_5111_length_609_cov_10.161885:1-609 [pilon] NODE_2999_length_873_cov_22.438830:1-873 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 456, Coverage: 32, minDepth: 8 [pilon] Confirmed 644 of 873 bases (73.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2999_length_873_cov_22.438830:1-873 [pilon] Processing NODE_3155_length_841_cov_26.233333:1-841 [pilon] NODE_4658_length_647_cov_27.836502:1-647 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 334, Coverage: 38, minDepth: 10 [pilon] Confirmed 563 of 647 bases (87.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4658_length_647_cov_27.836502:1-647 [pilon] Processing NODE_7597_length_438_cov_6.902208:1-438 [pilon] NODE_9947_length_327_cov_37.674757:1-327 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 161, Coverage: 18, minDepth: 5 [pilon] Confirmed 269 of 327 bases (82.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9947_length_327_cov_37.674757:1-327 [pilon] Processing NODE_4277_length_684_cov_5.182948:1-684 [pilon] NODE_8546_length_391_cov_32.411111:1-391 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 224, Coverage: 36, minDepth: 9 [pilon] Confirmed 357 of 391 bases (91.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8546_length_391_cov_32.411111:1-391 [pilon] Processing NODE_2471_length_972_cov_21.971798:1-972 [pilon] NODE_9573_length_342_cov_28.389140:1-342 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 132, Coverage: 5, minDepth: 5 [pilon] Confirmed 150 of 342 bases (43.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9573_length_342_cov_28.389140:1-342 [pilon] Processing NODE_9919_length_329_cov_18.139423:1-329 [pilon] NODE_12748_length_243_cov_25.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12748_length_243_cov_25.598361:1-243 [pilon] Processing NODE_12729_length_243_cov_25.860656:1-243 [pilon] NODE_7458_length_445_cov_39.283951:1-445 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 289, Coverage: 53, minDepth: 13 [pilon] Confirmed 374 of 445 bases (84.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7458_length_445_cov_39.283951:1-445 [pilon] Processing NODE_5587_length_571_cov_16.011111:1-571 [pilon] NODE_6340_length_514_cov_20.557252:1-514 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 183, Coverage: 34, minDepth: 9 [pilon] Confirmed 402 of 514 bases (78.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6340_length_514_cov_20.557252:1-514 [pilon] Processing NODE_8705_length_382_cov_13.199234:1-382 [pilon] NODE_10220_length_316_cov_11.917949:1-316 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 47, Coverage: 2, minDepth: 5 [pilon] Confirmed 104 of 316 bases (32.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10220_length_316_cov_11.917949:1-316 [pilon] Processing NODE_5645_length_567_cov_26.423767:1-567 [pilon] NODE_4784_length_636_cov_25.753398:1-636 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 292, Coverage: 35, minDepth: 9 [pilon] Confirmed 477 of 636 bases (75.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4784_length_636_cov_25.753398:1-636 [pilon] Processing NODE_10454_length_306_cov_17.118919:1-306 [pilon] NODE_9932_length_328_cov_26.840580:1-328 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 119, Coverage: 4, minDepth: 5 [pilon] Confirmed 146 of 328 bases (44.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9932_length_328_cov_26.840580:1-328 [pilon] Processing NODE_2358_length_999_cov_11.348519:1-999 [pilon] NODE_175_length_2582_cov_16.608289:1-2582 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 969, Coverage: 37, minDepth: 9 [pilon] Confirmed 2249 of 2582 bases (87.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_175_length_2582_cov_16.608289:1-2582 [pilon] Processing NODE_12765_length_243_cov_25.409836:1-243 [pilon] NODE_12061_length_245_cov_20.814516:1-245 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 57, Coverage: 8, minDepth: 5 [pilon] Confirmed 166 of 245 bases (67.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12061_length_245_cov_20.814516:1-245 [pilon] Processing NODE_9903_length_330_cov_13.822967:1-330 [pilon] NODE_3800_length_740_cov_44.063005:1-740 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 603, Coverage: 84, minDepth: 21 [pilon] Confirmed 642 of 740 bases (86.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3800_length_740_cov_44.063005:1-740 [pilon] Processing NODE_6017_length_539_cov_35.885167:1-539 [pilon] NODE_8596_length_389_cov_3.701493:1-389 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 389 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12947_length_243_cov_23.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12947_length_243_cov_23.450820:1-243 [pilon] Finished processing NODE_8596_length_389_cov_3.701493:1-389 [pilon] Processing NODE_9390_length_351_cov_8.634783:1-351 [pilon] Processing NODE_15182_length_169_cov_11.979167:1-169 [pilon] NODE_3343_length_806_cov_49.080292:1-806 log: [pilon] frags shovill.bam: coverage 99 [pilon] Total Reads: 761, Coverage: 99, minDepth: 25 [pilon] Confirmed 722 of 806 bases (89.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3343_length_806_cov_49.080292:1-806 [pilon] NODE_14483_length_243_cov_10.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14483_length_243_cov_10.368852:1-243 [pilon] Processing NODE_8723_length_381_cov_16.057692:1-381 [pilon] NODE_9252_length_355_cov_65.299145:1-355 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 343, Coverage: 67, minDepth: 17 [pilon] Confirmed 311 of 355 bases (87.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9252_length_355_cov_65.299145:1-355 [pilon] Processing NODE_220_length_2433_cov_28.573097:1-2433 [pilon] NODE_8590_length_389_cov_15.126866:1-389 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 116, Coverage: 15, minDepth: 5 [pilon] Confirmed 338 of 389 bases (86.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8590_length_389_cov_15.126866:1-389 [pilon] Processing NODE_7595_length_438_cov_8.599369:1-438 [pilon] NODE_10166_length_318_cov_22.228426:1-318 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 103, Coverage: 13, minDepth: 5 [pilon] Confirmed 278 of 318 bases (87.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10166_length_318_cov_22.228426:1-318 [pilon] Processing NODE_14874_length_243_cov_6.942623:1-243 [pilon] NODE_3155_length_841_cov_26.233333:1-841 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 494, Coverage: 42, minDepth: 11 [pilon] Confirmed 584 of 841 bases (69.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3155_length_841_cov_26.233333:1-841 [pilon] Processing NODE_1507_length_1254_cov_42.440424:1-1254 [pilon] NODE_14189_length_243_cov_12.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14189_length_243_cov_12.696721:1-243 [pilon] Processing NODE_415_length_2025_cov_2.190651:1-2025 [pilon] NODE_606_length_1802_cov_22.356336:1-1802 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 873, Coverage: 56, minDepth: 14 [pilon] Confirmed 1543 of 1802 bases (85.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_606_length_1802_cov_22.356336:1-1802 [pilon] Processing NODE_8604_length_388_cov_11.883895:1-388 [pilon] NODE_8917_length_370_cov_17.915663:1-370 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 103, Coverage: 13, minDepth: 5 [pilon] Confirmed 277 of 370 bases (74.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8917_length_370_cov_17.915663:1-370 [pilon] Processing NODE_2318_length_1007_cov_0.743792:1-1007 [pilon] NODE_1392_length_1299_cov_21.520374:1-1299 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 588, Coverage: 51, minDepth: 13 [pilon] Confirmed 1040 of 1299 bases (80.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1392_length_1299_cov_21.520374:1-1299 [pilon] Processing NODE_4271_length_684_cov_21.055062:1-684 [pilon] NODE_7597_length_438_cov_6.902208:1-438 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 56, Coverage: 8, minDepth: 5 [pilon] Confirmed 269 of 438 bases (61.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7597_length_438_cov_6.902208:1-438 [pilon] Processing NODE_5844_length_552_cov_12.410673:1-552 [pilon] NODE_10445_length_306_cov_22.140541:1-306 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 91, Coverage: 12, minDepth: 5 [pilon] Confirmed 243 of 306 bases (79.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10445_length_306_cov_22.140541:1-306 [pilon] Processing NODE_2767_length_914_cov_29.268600:1-914 [pilon] NODE_5111_length_609_cov_10.161885:1-609 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 120, Coverage: 18, minDepth: 5 [pilon] Confirmed 510 of 609 bases (83.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5111_length_609_cov_10.161885:1-609 [pilon] Processing NODE_3241_length_826_cov_2.431206:1-826 [pilon] NODE_14884_length_243_cov_6.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14884_length_243_cov_6.877049:1-243 [pilon] Processing NODE_10999_length_285_cov_6.262195:1-285 [pilon] NODE_4277_length_684_cov_5.182948:1-684 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 74, Coverage: 13, minDepth: 5 [pilon] Confirmed 505 of 684 bases (73.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4277_length_684_cov_5.182948:1-684 [pilon] Processing NODE_4395_length_671_cov_51.956364:1-671 [pilon] Processing NODE_3828_length_738_cov_2.878444:1-738 [pilon] NODE_2471_length_972_cov_21.971798:1-972 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 480, Coverage: 45, minDepth: 11 [pilon] Confirmed 779 of 972 bases (80.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2471_length_972_cov_21.971798:1-972 [pilon] Processing NODE_608_length_1798_cov_2.979726:1-1798 [pilon] NODE_9919_length_329_cov_18.139423:1-329 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 79, Coverage: 7, minDepth: 5 [pilon] Confirmed 195 of 329 bases (59.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9919_length_329_cov_18.139423:1-329 [pilon] Processing NODE_13129_length_243_cov_21.680328:1-243 [pilon] NODE_12729_length_243_cov_25.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12729_length_243_cov_25.860656:1-243 [pilon] Processing NODE_12456_length_243_cov_29.803279:1-243 [pilon] NODE_2358_length_999_cov_11.348519:1-999 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 273, Coverage: 21, minDepth: 5 [pilon] Confirmed 766 of 999 bases (76.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2358_length_999_cov_11.348519:1-999 [pilon] Processing NODE_13535_length_243_cov_18.016393:1-243 [pilon] NODE_12765_length_243_cov_25.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12765_length_243_cov_25.409836:1-243 [pilon] Processing NODE_3871_length_732_cov_1.836334:1-732 [pilon] NODE_9903_length_330_cov_13.822967:1-330 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 57, Coverage: 11, minDepth: 5 [pilon] Confirmed 223 of 330 bases (67.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9903_length_330_cov_13.822967:1-330 [pilon] NODE_5587_length_571_cov_16.011111:1-571 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 178, Coverage: 18, minDepth: 5 [pilon] Confirmed 452 of 571 bases (79.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5587_length_571_cov_16.011111:1-571 [pilon] Processing NODE_13541_length_243_cov_17.975410:1-243 [pilon] NODE_8723_length_381_cov_16.057692:1-381 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 94, Coverage: 13, minDepth: 5 [pilon] Confirmed 292 of 381 bases (76.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8723_length_381_cov_16.057692:1-381 [pilon] Processing NODE_8331_length_403_cov_2.666667:1-403 [pilon] NODE_8705_length_382_cov_13.199234:1-382 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 73, Coverage: 13, minDepth: 5 [pilon] Confirmed 324 of 382 bases (84.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8705_length_382_cov_13.199234:1-382 [pilon] Processing NODE_13231_length_243_cov_20.819672:1-243 [pilon] NODE_5645_length_567_cov_26.423767:1-567 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 284, Coverage: 40, minDepth: 10 [pilon] Confirmed 539 of 567 bases (95.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5645_length_567_cov_26.423767:1-567 [pilon] Processing NODE_4195_length_694_cov_17.799302:1-694 [pilon] NODE_10454_length_306_cov_17.118919:1-306 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 50, Coverage: 9, minDepth: 5 [pilon] Confirmed 216 of 306 bases (70.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10454_length_306_cov_17.118919:1-306 [pilon] Processing NODE_6619_length_496_cov_1.752000:1-496 [pilon] NODE_6017_length_539_cov_35.885167:1-539 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 328, Coverage: 52, minDepth: 13 [pilon] Confirmed 458 of 539 bases (84.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6017_length_539_cov_35.885167:1-539 [pilon] Processing NODE_12868_length_243_cov_24.336066:1-243 [pilon] NODE_15182_length_169_cov_11.979167:1-169 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 169 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15182_length_169_cov_11.979167:1-169 [pilon] Processing NODE_405_length_2042_cov_12.970328:1-2042 [pilon] NODE_9390_length_351_cov_8.634783:1-351 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 44, Coverage: 7, minDepth: 5 [pilon] Confirmed 177 of 351 bases (50.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9390_length_351_cov_8.634783:1-351 [pilon] Processing NODE_10723_length_297_cov_11.403409:1-297 [pilon] NODE_7595_length_438_cov_8.599369:1-438 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 67, Coverage: 12, minDepth: 5 [pilon] Confirmed 305 of 438 bases (69.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7595_length_438_cov_8.599369:1-438 [pilon] Processing NODE_10069_length_322_cov_52.368159:1-322 [pilon] NODE_415_length_2025_cov_2.190651:1-2025 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 133, Coverage: 8, minDepth: 5 [pilon] Confirmed 1568 of 2025 bases (77.43%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_415_length_2025_cov_2.190651:1-2025 [pilon] Processing NODE_3290_length_816_cov_27.282014:1-816 [pilon] NODE_1507_length_1254_cov_42.440424:1-1254 log: [pilon] frags shovill.bam: coverage 82 [pilon] Total Reads: 1207, Coverage: 82, minDepth: 21 [pilon] Confirmed 810 of 1254 bases (64.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_14874_length_243_cov_6.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1507_length_1254_cov_42.440424:1-1254 [pilon] Finished processing NODE_14874_length_243_cov_6.942623:1-243 [pilon] Processing NODE_366_length_2103_cov_4.849142:1-2103 [pilon] Processing NODE_15263_length_123_cov_43.000000:1-123 [pilon] NODE_2318_length_1007_cov_0.743792:1-1007 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 24, Coverage: 3, minDepth: 5 [pilon] Confirmed 251 of 1007 bases (24.93%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2318_length_1007_cov_0.743792:1-1007 [pilon] Processing NODE_1523_length_1250_cov_21.604960:1-1250 [pilon] NODE_8604_length_388_cov_11.883895:1-388 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 55, Coverage: 6, minDepth: 5 [pilon] Confirmed 205 of 388 bases (52.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8604_length_388_cov_11.883895:1-388 [pilon] Processing NODE_4515_length_660_cov_16.545455:1-660 [pilon] NODE_220_length_2433_cov_28.573097:1-2433 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 1496, Coverage: 53, minDepth: 13 [pilon] Confirmed 2376 of 2433 bases (97.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_220_length_2433_cov_28.573097:1-2433 [pilon] Processing NODE_11854_length_252_cov_6.122137:1-252 [pilon] NODE_13129_length_243_cov_21.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13129_length_243_cov_21.680328:1-243 [pilon] Processing NODE_4665_length_647_cov_2.821293:1-647 [pilon] NODE_10999_length_285_cov_6.262195:1-285 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10999_length_285_cov_6.262195:1-285 [pilon] Processing NODE_11629_length_258_cov_23.729927:1-258 [pilon] NODE_4271_length_684_cov_21.055062:1-684 log: [pilon] NODE_3241_length_826_cov_2.431206:1-826 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 50, Coverage: 7, minDepth: 5 [pilon] Confirmed 533 of 826 bases (64.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3241_length_826_cov_2.431206:1-826 [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 315, Coverage: 14, minDepth: 5 [pilon] Confirmed 419 of 684 bases (61.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_15098_length_222_cov_6.920792:1-222 [pilon] Finished processing NODE_4271_length_684_cov_21.055062:1-684 [pilon] Processing NODE_9945_length_327_cov_54.417476:1-327 [pilon] NODE_5844_length_552_cov_12.410673:1-552 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 132, Coverage: 27, minDepth: 7 [pilon] Confirmed 472 of 552 bases (85.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5844_length_552_cov_12.410673:1-552 [pilon] Processing NODE_8080_length_414_cov_17.419795:1-414 [pilon] NODE_3871_length_732_cov_1.836334:1-732 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 34, Coverage: 6, minDepth: 5 [pilon] Confirmed 403 of 732 bases (55.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3871_length_732_cov_1.836334:1-732 [pilon] Processing NODE_517_length_1902_cov_3.553060:1-1902 [pilon] NODE_2767_length_914_cov_29.268600:1-914 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 508, Coverage: 60, minDepth: 15 [pilon] Confirmed 634 of 914 bases (69.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2767_length_914_cov_29.268600:1-914 [pilon] Processing NODE_10102_length_321_cov_19.105000:1-321 [pilon] NODE_3828_length_738_cov_2.878444:1-738 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 47, Coverage: 8, minDepth: 5 [pilon] Confirmed 467 of 738 bases (63.28%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3828_length_738_cov_2.878444:1-738 [pilon] Processing NODE_11347_length_270_cov_15.523490:1-270 [pilon] NODE_8331_length_403_cov_2.666667:1-403 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 19, Coverage: 6, minDepth: 5 [pilon] Confirmed 300 of 403 bases (74.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8331_length_403_cov_2.666667:1-403 [pilon] Processing NODE_1187_length_1403_cov_6.152886:1-1403 [pilon] NODE_4395_length_671_cov_51.956364:1-671 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 631, Coverage: 91, minDepth: 23 [pilon] Confirmed 594 of 671 bases (88.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4395_length_671_cov_51.956364:1-671 [pilon] Processing NODE_975_length_1511_cov_12.332374:1-1511 [pilon] NODE_12456_length_243_cov_29.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12456_length_243_cov_29.803279:1-243 [pilon] NODE_608_length_1798_cov_2.979726:1-1798 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 130, Coverage: 9, minDepth: 5 [pilon] Confirmed 1261 of 1798 bases (70.13%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_10761_length_295_cov_8.873563:1-295 [pilon] Finished processing NODE_608_length_1798_cov_2.979726:1-1798 [pilon] Processing NODE_13770_length_243_cov_15.877049:1-243 [pilon] NODE_13535_length_243_cov_18.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13535_length_243_cov_18.016393:1-243 [pilon] Processing NODE_7925_length_422_cov_0.697674:1-422 [pilon] NODE_13541_length_243_cov_17.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13541_length_243_cov_17.975410:1-243 [pilon] Processing NODE_11380_length_268_cov_7.210884:1-268 [pilon] NODE_4195_length_694_cov_17.799302:1-694 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 231, Coverage: 25, minDepth: 6 [pilon] Confirmed 550 of 694 bases (79.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4195_length_694_cov_17.799302:1-694 [pilon] Processing NODE_54_length_3552_cov_21.366074:1-3552 [pilon] NODE_10723_length_297_cov_11.403409:1-297 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 39, Coverage: 4, minDepth: 5 [pilon] Confirmed 198 of 297 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10723_length_297_cov_11.403409:1-297 [pilon] Processing NODE_2689_length_931_cov_12.072840:1-931 [pilon] NODE_13231_length_243_cov_20.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13231_length_243_cov_20.819672:1-243 [pilon] Processing NODE_191_length_2537_cov_25.151904:1-2537 [pilon] NODE_6619_length_496_cov_1.752000:1-496 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 26, Coverage: 4, minDepth: 5 [pilon] Confirmed 226 of 496 bases (45.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6619_length_496_cov_1.752000:1-496 [pilon] Processing NODE_10233_length_315_cov_26.840206:1-315 [pilon] Processing NODE_11037_length_282_cov_14.478261:1-282 [pilon] Processing NODE_6735_length_488_cov_1.166213:1-488 [pilon] NODE_366_length_2103_cov_4.849142:1-2103 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 253, Coverage: 13, minDepth: 5 [pilon] Confirmed 1412 of 2103 bases (67.14%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_366_length_2103_cov_4.849142:1-2103 [pilon] Processing NODE_3192_length_834_cov_1.433380:1-834 [pilon] NODE_12868_length_243_cov_24.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12868_length_243_cov_24.336066:1-243 [pilon] Processing NODE_14858_length_243_cov_7.090164:1-243 [pilon] NODE_405_length_2042_cov_12.970328:1-2042 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 577, Coverage: 31, minDepth: 8 [pilon] Confirmed 1545 of 2042 bases (75.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_405_length_2042_cov_12.970328:1-2042 [pilon] Processing NODE_15002_length_243_cov_5.385246:1-243 [pilon] NODE_10069_length_322_cov_52.368159:1-322 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 219, Coverage: 41, minDepth: 10 [pilon] Confirmed 294 of 322 bases (91.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10069_length_322_cov_52.368159:1-322 [pilon] Processing NODE_11742_length_255_cov_19.716418:1-255 [pilon] NODE_10102_length_321_cov_19.105000:1-321 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 66, Coverage: 2, minDepth: 5 [pilon] Confirmed 77 of 321 bases (23.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10102_length_321_cov_19.105000:1-321 [pilon] Processing NODE_12397_length_243_cov_31.065574:1-243 [pilon] NODE_3290_length_816_cov_27.282014:1-816 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 459, Coverage: 39, minDepth: 10 [pilon] Confirmed 588 of 816 bases (72.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3290_length_816_cov_27.282014:1-816 [pilon] Processing NODE_1021_length_1485_cov_7.766129:1-1485 [pilon] NODE_1523_length_1250_cov_21.604960:1-1250 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 609, Coverage: 46, minDepth: 12 [pilon] Confirmed 1066 of 1250 bases (85.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1523_length_1250_cov_21.604960:1-1250 [pilon] Processing NODE_5021_length_617_cov_5.800403:1-617 [pilon] NODE_11854_length_252_cov_6.122137:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11854_length_252_cov_6.122137:1-252 [pilon] Processing NODE_5919_length_546_cov_18.632941:1-546 [pilon] NODE_15263_length_123_cov_43.000000:1-123 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 123 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15263_length_123_cov_43.000000:1-123 [pilon] Processing NODE_3071_length_859_cov_1.688347:1-859 [pilon] NODE_4665_length_647_cov_2.821293:1-647 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 333 of 647 bases (51.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4665_length_647_cov_2.821293:1-647 [pilon] Processing NODE_6746_length_486_cov_40.328767:1-486 [pilon] NODE_4515_length_660_cov_16.545455:1-660 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 209, Coverage: 27, minDepth: 7 [pilon] Confirmed 419 of 660 bases (63.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4515_length_660_cov_16.545455:1-660 [pilon] Processing NODE_2622_length_942_cov_15.354446:1-942 [pilon] NODE_517_length_1902_cov_3.553060:1-1902 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 159, Coverage: 11, minDepth: 5 [pilon] Confirmed 1385 of 1902 bases (72.82%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_517_length_1902_cov_3.553060:1-1902 [pilon] Processing NODE_7625_length_436_cov_13.603175:1-436 [pilon] NODE_11629_length_258_cov_23.729927:1-258 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 67, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 258 bases (50.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11629_length_258_cov_23.729927:1-258 [pilon] Processing NODE_12973_length_243_cov_23.221311:1-243 [pilon] NODE_9945_length_327_cov_54.417476:1-327 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 251, Coverage: 39, minDepth: 10 [pilon] Confirmed 278 of 327 bases (85.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9945_length_327_cov_54.417476:1-327 [pilon] Processing NODE_6802_length_483_cov_3.726519:1-483 [pilon] NODE_15098_length_222_cov_6.920792:1-222 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 21, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 222 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15098_length_222_cov_6.920792:1-222 [pilon] Processing NODE_13196_length_243_cov_21.122951:1-243 [pilon] NODE_8080_length_414_cov_17.419795:1-414 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 129, Coverage: 17, minDepth: 5 [pilon] Confirmed 293 of 414 bases (70.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8080_length_414_cov_17.419795:1-414 [pilon] Processing NODE_10349_length_311_cov_56.421053:1-311 [pilon] NODE_2689_length_931_cov_12.072840:1-931 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 252, Coverage: 21, minDepth: 5 [pilon] Confirmed 740 of 931 bases (79.48%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2689_length_931_cov_12.072840:1-931 [pilon] Processing NODE_1407_length_1295_cov_25.216354:1-1295 [pilon] NODE_1187_length_1403_cov_6.152886:1-1403 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 239, Coverage: 12, minDepth: 5 [pilon] Confirmed 1059 of 1403 bases (75.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1187_length_1403_cov_6.152886:1-1403 [pilon] Processing NODE_11085_length_280_cov_7.723270:1-280 [pilon] NODE_7925_length_422_cov_0.697674:1-422 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 5, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 422 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7925_length_422_cov_0.697674:1-422 [pilon] Processing NODE_1301_length_1341_cov_12.021311:1-1341 [pilon] NODE_10761_length_295_cov_8.873563:1-295 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 35, Coverage: 9, minDepth: 5 [pilon] Confirmed 224 of 295 bases (75.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10761_length_295_cov_8.873563:1-295 [pilon] Processing NODE_8709_length_381_cov_65.907692:1-381 [pilon] NODE_11347_length_270_cov_15.523490:1-270 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 56, Coverage: 3, minDepth: 5 [pilon] Confirmed 81 of 270 bases (30.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11347_length_270_cov_15.523490:1-270 [pilon] Processing NODE_7975_length_419_cov_25.342282:1-419 [pilon] NODE_13770_length_243_cov_15.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13770_length_243_cov_15.877049:1-243 [pilon] Processing NODE_3841_length_735_cov_17.094463:1-735 [pilon] NODE_975_length_1511_cov_12.332374:1-1511 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 388, Coverage: 30, minDepth: 8 [pilon] Confirmed 890 of 1511 bases (58.90%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_975_length_1511_cov_12.332374:1-1511 [pilon] Processing NODE_7927_length_421_cov_51.550000:1-421 [pilon] NODE_11380_length_268_cov_7.210884:1-268 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 22, Coverage: 3, minDepth: 5 [pilon] Confirmed 70 of 268 bases (26.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11380_length_268_cov_7.210884:1-268 [pilon] Processing NODE_12069_length_245_cov_8.951613:1-245 [pilon] NODE_6735_length_488_cov_1.166213:1-488 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 14 of 488 bases (2.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6735_length_488_cov_1.166213:1-488 [pilon] Processing NODE_5545_length_574_cov_4.165563:1-574 [pilon] NODE_11037_length_282_cov_14.478261:1-282 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 59, Coverage: 6, minDepth: 5 [pilon] Confirmed 158 of 282 bases (56.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11037_length_282_cov_14.478261:1-282 [pilon] Processing NODE_8510_length_393_cov_22.136029:1-393 [pilon] NODE_10233_length_315_cov_26.840206:1-315 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 123, Coverage: 6, minDepth: 5 [pilon] Confirmed 160 of 315 bases (50.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10233_length_315_cov_26.840206:1-315 [pilon] Processing NODE_14704_length_243_cov_8.540984:1-243 [pilon] NODE_54_length_3552_cov_21.366074:1-3552 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 1654, Coverage: 60, minDepth: 15 [pilon] Confirmed 3064 of 3552 bases (86.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_54_length_3552_cov_21.366074:1-3552 [pilon] Processing NODE_9907_length_330_cov_12.071770:1-330 [pilon] NODE_15002_length_243_cov_5.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15002_length_243_cov_5.385246:1-243 [pilon] Processing NODE_10199_length_317_cov_29.224490:1-317 [pilon] NODE_3192_length_834_cov_1.433380:1-834 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 26, Coverage: 4, minDepth: 5 [pilon] Confirmed 398 of 834 bases (47.72%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3192_length_834_cov_1.433380:1-834 [pilon] Processing NODE_2063_length_1069_cov_9.766878:1-1069 [pilon] NODE_191_length_2537_cov_25.151904:1-2537 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 1556, Coverage: 71, minDepth: 18 [pilon] Confirmed 2092 of 2537 bases (82.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_191_length_2537_cov_25.151904:1-2537 [pilon] Processing NODE_4331_length_678_cov_1.337522:1-678 [pilon] NODE_11742_length_255_cov_19.716418:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 47, Coverage: 4, minDepth: 5 [pilon] Confirmed 97 of 255 bases (38.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11742_length_255_cov_19.716418:1-255 [pilon] Processing NODE_5759_length_559_cov_2.821918:1-559 [pilon] NODE_14858_length_243_cov_7.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14858_length_243_cov_7.090164:1-243 [pilon] Processing NODE_4103_length_704_cov_67.226415:1-704 [pilon] NODE_12973_length_243_cov_23.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12973_length_243_cov_23.221311:1-243 [pilon] Processing NODE_9795_length_334_cov_19.544601:1-334 [pilon] NODE_12397_length_243_cov_31.065574:1-243 log: [pilon] NODE_5021_length_617_cov_5.800403:1-617 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 67, Coverage: 13, minDepth: 5 [pilon] Confirmed 461 of 617 bases (74.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5021_length_617_cov_5.800403:1-617 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12397_length_243_cov_31.065574:1-243 [pilon] Processing NODE_2574_length_952_cov_2.697954:1-952 [pilon] Processing NODE_13101_length_243_cov_21.934426:1-243 [pilon] NODE_3071_length_859_cov_1.688347:1-859 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 51, Coverage: 7, minDepth: 5 [pilon] Confirmed 526 of 859 bases (61.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3071_length_859_cov_1.688347:1-859 [pilon] Processing NODE_9457_length_348_cov_10.431718:1-348 [pilon] NODE_1021_length_1485_cov_7.766129:1-1485 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 394, Coverage: 34, minDepth: 9 [pilon] Confirmed 1072 of 1485 bases (72.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1021_length_1485_cov_7.766129:1-1485 [pilon] Processing NODE_7769_length_429_cov_10.750000:1-429 [pilon] NODE_7625_length_436_cov_13.603175:1-436 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 111, Coverage: 9, minDepth: 5 [pilon] Confirmed 225 of 436 bases (51.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7625_length_436_cov_13.603175:1-436 [pilon] Processing NODE_6600_length_497_cov_24.401596:1-497 [pilon] NODE_2622_length_942_cov_15.354446:1-942 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 272, Coverage: 22, minDepth: 6 [pilon] Confirmed 714 of 942 bases (75.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2622_length_942_cov_15.354446:1-942 [pilon] Processing NODE_5989_length_542_cov_5.173397:1-542 [pilon] NODE_6746_length_486_cov_40.328767:1-486 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 386, Coverage: 36, minDepth: 9 [pilon] Confirmed 408 of 486 bases (83.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6746_length_486_cov_40.328767:1-486 [pilon] Processing NODE_2433_length_981_cov_32.040698:1-981 [pilon] NODE_5919_length_546_cov_18.632941:1-546 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 208, Coverage: 20, minDepth: 5 [pilon] Confirmed 423 of 546 bases (77.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5919_length_546_cov_18.632941:1-546 [pilon] Processing NODE_4852_length_631_cov_0.476471:1-631 [pilon] NODE_6802_length_483_cov_3.726519:1-483 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 33, Coverage: 8, minDepth: 5 [pilon] Confirmed 300 of 483 bases (62.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6802_length_483_cov_3.726519:1-483 [pilon] Processing NODE_9724_length_336_cov_62.339535:1-336 [pilon] NODE_13196_length_243_cov_21.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13196_length_243_cov_21.122951:1-243 [pilon] Processing NODE_488_length_1919_cov_21.617353:1-1919 [pilon] NODE_10349_length_311_cov_56.421053:1-311 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 248, Coverage: 32, minDepth: 8 [pilon] Confirmed 283 of 311 bases (91.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10349_length_311_cov_56.421053:1-311 [pilon] Processing NODE_5244_length_597_cov_5.586134:1-597 [pilon] NODE_1407_length_1295_cov_25.216354:1-1295 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 720, Coverage: 43, minDepth: 11 [pilon] Confirmed 1041 of 1295 bases (80.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1407_length_1295_cov_25.216354:1-1295 [pilon] Processing NODE_8794_length_378_cov_6.396887:1-378 [pilon] NODE_11085_length_280_cov_7.723270:1-280 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 27, Coverage: 3, minDepth: 5 [pilon] Confirmed 72 of 280 bases (25.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11085_length_280_cov_7.723270:1-280 [pilon] Processing NODE_4266_length_685_cov_5.998227:1-685 [pilon] NODE_1301_length_1341_cov_12.021311:1-1341 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 352, Coverage: 30, minDepth: 8 [pilon] Confirmed 1089 of 1341 bases (81.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1301_length_1341_cov_12.021311:1-1341 [pilon] Processing NODE_12291_length_243_cov_33.434426:1-243 [pilon] NODE_8709_length_381_cov_65.907692:1-381 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 372, Coverage: 70, minDepth: 18 [pilon] Confirmed 328 of 381 bases (86.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8709_length_381_cov_65.907692:1-381 [pilon] Processing NODE_5817_length_554_cov_16.630485:1-554 [pilon] NODE_12069_length_245_cov_8.951613:1-245 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 26, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 245 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12069_length_245_cov_8.951613:1-245 [pilon] Processing NODE_8997_length_366_cov_35.591837:1-366 [pilon] NODE_7975_length_419_cov_25.342282:1-419 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 168, Coverage: 20, minDepth: 5 [pilon] Confirmed 280 of 419 bases (66.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7975_length_419_cov_25.342282:1-419 [pilon] Processing NODE_12609_length_243_cov_27.475410:1-243 [pilon] NODE_9907_length_330_cov_12.071770:1-330 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 60, Coverage: 8, minDepth: 5 [pilon] Confirmed 253 of 330 bases (76.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9907_length_330_cov_12.071770:1-330 [pilon] Processing NODE_5294_length_593_cov_2.158898:1-593 [pilon] NODE_7927_length_421_cov_51.550000:1-421 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 353, Coverage: 65, minDepth: 16 [pilon] Confirmed 389 of 421 bases (92.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7927_length_421_cov_51.550000:1-421 [pilon] Processing NODE_13977_length_243_cov_14.278689:1-243 [pilon] NODE_14704_length_243_cov_8.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14704_length_243_cov_8.540984:1-243 [pilon] Processing NODE_4642_length_648_cov_21.946869:1-648 [pilon] NODE_3841_length_735_cov_17.094463:1-735 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 252, Coverage: 45, minDepth: 11 [pilon] Confirmed 564 of 735 bases (76.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3841_length_735_cov_17.094463:1-735 [pilon] Processing NODE_9772_length_336_cov_8.860465:1-336 [pilon] NODE_5545_length_574_cov_4.165563:1-574 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 57, Coverage: 13, minDepth: 5 [pilon] Confirmed 440 of 574 bases (76.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5545_length_574_cov_4.165563:1-574 [pilon] Processing NODE_3538_length_778_cov_49.109589:1-778 [pilon] NODE_8510_length_393_cov_22.136029:1-393 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 123, Coverage: 15, minDepth: 5 [pilon] Confirmed 256 of 393 bases (65.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8510_length_393_cov_22.136029:1-393 [pilon] Processing NODE_13384_length_243_cov_19.508197:1-243 [pilon] NODE_10199_length_317_cov_29.224490:1-317 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 137, Coverage: 14, minDepth: 5 [pilon] Confirmed 254 of 317 bases (80.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10199_length_317_cov_29.224490:1-317 [pilon] Processing NODE_1083_length_1450_cov_12.570354:1-1450 [pilon] NODE_9795_length_334_cov_19.544601:1-334 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 88, Coverage: 13, minDepth: 5 [pilon] Confirmed 225 of 334 bases (67.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9795_length_334_cov_19.544601:1-334 [pilon] Processing NODE_13953_length_243_cov_14.491803:1-243 [pilon] NODE_5759_length_559_cov_2.821918:1-559 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 390 of 559 bases (69.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5759_length_559_cov_2.821918:1-559 [pilon] Processing NODE_10462_length_306_cov_14.881081:1-306 [pilon] NODE_2063_length_1069_cov_9.766878:1-1069 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 218, Coverage: 16, minDepth: 5 [pilon] Confirmed 782 of 1069 bases (73.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2063_length_1069_cov_9.766878:1-1069 [pilon] Processing NODE_3422_length_795_cov_19.115727:1-795 [pilon] NODE_4331_length_678_cov_1.337522:1-678 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 310 of 678 bases (45.72%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4331_length_678_cov_1.337522:1-678 [pilon] Processing NODE_10081_length_321_cov_37.935000:1-321 [pilon] NODE_9457_length_348_cov_10.431718:1-348 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 39, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 348 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9457_length_348_cov_10.431718:1-348 [pilon] Processing NODE_6269_length_520_cov_0.230576:1-520 [pilon] NODE_2574_length_952_cov_2.697954:1-952 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 61, Coverage: 8, minDepth: 5 [pilon] Confirmed 500 of 952 bases (52.52%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2574_length_952_cov_2.697954:1-952 [pilon] Processing NODE_12702_length_243_cov_26.147541:1-243 [pilon] NODE_7769_length_429_cov_10.750000:1-429 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 75, Coverage: 10, minDepth: 5 [pilon] Confirmed 225 of 429 bases (52.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7769_length_429_cov_10.750000:1-429 [pilon] Processing NODE_15193_length_162_cov_66.219512:1-162 [pilon] NODE_4103_length_704_cov_67.226415:1-704 log: [pilon] frags shovill.bam: coverage 141 [pilon] Total Reads: 891, Coverage: 141, minDepth: 35 [pilon] Confirmed 586 of 704 bases (83.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4103_length_704_cov_67.226415:1-704 [pilon] Processing NODE_11358_length_270_cov_8.208054:1-270 [pilon] NODE_6600_length_497_cov_24.401596:1-497 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 186, Coverage: 36, minDepth: 9 [pilon] Confirmed 362 of 497 bases (72.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6600_length_497_cov_24.401596:1-497 [pilon] Processing NODE_4995_length_619_cov_1.409639:1-619 [pilon] NODE_5989_length_542_cov_5.173397:1-542 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 52, Coverage: 12, minDepth: 5 [pilon] Confirmed 357 of 542 bases (65.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_4852_length_631_cov_0.476471:1-631 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 116 of 631 bases (18.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5989_length_542_cov_5.173397:1-542 [pilon] Finished processing NODE_4852_length_631_cov_0.476471:1-631 [pilon] Processing NODE_5318_length_591_cov_12.025532:1-591 [pilon] Processing NODE_4833_length_632_cov_2.430528:1-632 [pilon] NODE_13101_length_243_cov_21.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13101_length_243_cov_21.934426:1-243 [pilon] Processing NODE_9182_length_358_cov_5.763713:1-358 [pilon] NODE_2433_length_981_cov_32.040698:1-981 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 657, Coverage: 75, minDepth: 19 [pilon] Confirmed 731 of 981 bases (74.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2433_length_981_cov_32.040698:1-981 [pilon] Processing NODE_4583_length_655_cov_2.653558:1-655 [pilon] NODE_5294_length_593_cov_2.158898:1-593 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 31, Coverage: 6, minDepth: 5 [pilon] Confirmed 404 of 593 bases (68.13%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5294_length_593_cov_2.158898:1-593 [pilon] Processing NODE_4614_length_651_cov_28.675472:1-651 [pilon] NODE_5244_length_597_cov_5.586134:1-597 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 63, Coverage: 9, minDepth: 5 [pilon] Confirmed 438 of 597 bases (73.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5244_length_597_cov_5.586134:1-597 [pilon] Processing NODE_8772_length_378_cov_24.813230:1-378 [pilon] NODE_4642_length_648_cov_21.946869:1-648 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 259, Coverage: 35, minDepth: 9 [pilon] Confirmed 574 of 648 bases (88.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4642_length_648_cov_21.946869:1-648 [pilon] Processing NODE_13025_length_243_cov_22.672131:1-243 [pilon] NODE_8794_length_378_cov_6.396887:1-378 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 34, Coverage: 3, minDepth: 5 [pilon] Confirmed 110 of 378 bases (29.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8794_length_378_cov_6.396887:1-378 [pilon] Processing NODE_3509_length_782_cov_1.205749:1-782 [pilon] NODE_9724_length_336_cov_62.339535:1-336 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 302, Coverage: 40, minDepth: 10 [pilon] Confirmed 303 of 336 bases (90.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9724_length_336_cov_62.339535:1-336 [pilon] Processing NODE_13212_length_243_cov_20.975410:1-243 [pilon] NODE_488_length_1919_cov_21.617353:1-1919 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 923, Coverage: 46, minDepth: 12 [pilon] Confirmed 1566 of 1919 bases (81.61%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_488_length_1919_cov_21.617353:1-1919 [pilon] Processing NODE_3900_length_728_cov_2.032949:1-728 [pilon] NODE_4266_length_685_cov_5.998227:1-685 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 91, Coverage: 6, minDepth: 5 [pilon] Confirmed 339 of 685 bases (49.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4266_length_685_cov_5.998227:1-685 [pilon] Processing NODE_7143_length_463_cov_0.985380:1-463 [pilon] NODE_12291_length_243_cov_33.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 105, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12291_length_243_cov_33.434426:1-243 [pilon] Processing NODE_281_length_2277_cov_12.262987:1-2277 [pilon] NODE_13953_length_243_cov_14.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13953_length_243_cov_14.491803:1-243 [pilon] Processing NODE_10235_length_315_cov_25.010309:1-315 [pilon] NODE_8997_length_366_cov_35.591837:1-366 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 200, Coverage: 34, minDepth: 9 [pilon] Confirmed 321 of 366 bases (87.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8997_length_366_cov_35.591837:1-366 [pilon] Processing NODE_10070_length_322_cov_25.089552:1-322 [pilon] NODE_5817_length_554_cov_16.630485:1-554 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 179, Coverage: 24, minDepth: 6 [pilon] Confirmed 395 of 554 bases (71.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5817_length_554_cov_16.630485:1-554 [pilon] Processing NODE_6691_length_491_cov_9.981081:1-491 [pilon] NODE_13977_length_243_cov_14.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13977_length_243_cov_14.278689:1-243 [pilon] Processing NODE_8757_length_380_cov_9.262548:1-380 [pilon] NODE_12609_length_243_cov_27.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12609_length_243_cov_27.475410:1-243 [pilon] Processing NODE_9502_length_345_cov_29.174107:1-345 [pilon] NODE_9772_length_336_cov_8.860465:1-336 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 52, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 336 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9772_length_336_cov_8.860465:1-336 [pilon] Processing NODE_6936_length_475_cov_21.474576:1-475 [pilon] NODE_3538_length_778_cov_49.109589:1-778 log: [pilon] frags shovill.bam: coverage 101 [pilon] Total Reads: 721, Coverage: 101, minDepth: 25 [pilon] Confirmed 659 of 778 bases (84.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3538_length_778_cov_49.109589:1-778 [pilon] Processing NODE_10191_length_318_cov_10.055838:1-318 [pilon] NODE_10462_length_306_cov_14.881081:1-306 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 64, Coverage: 3, minDepth: 5 [pilon] Confirmed 87 of 306 bases (28.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10462_length_306_cov_14.881081:1-306 [pilon] Processing NODE_9765_length_336_cov_11.055814:1-336 [pilon] NODE_1083_length_1450_cov_12.570354:1-1450 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 501, Coverage: 32, minDepth: 8 [pilon] Confirmed 1346 of 1450 bases (92.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1083_length_1450_cov_12.570354:1-1450 [pilon] Processing NODE_9587_length_342_cov_19.791855:1-342 [pilon] NODE_13384_length_243_cov_19.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13384_length_243_cov_19.508197:1-243 [pilon] Processing NODE_10965_length_285_cov_20.219512:1-285 [pilon] NODE_15193_length_162_cov_66.219512:1-162 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 162 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15193_length_162_cov_66.219512:1-162 [pilon] Processing NODE_5118_length_608_cov_33.209446:1-608 [pilon] NODE_4614_length_651_cov_28.675472:1-651 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 340, Coverage: 54, minDepth: 14 [pilon] Confirmed 502 of 651 bases (77.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4614_length_651_cov_28.675472:1-651 [pilon] Processing NODE_7867_length_424_cov_8.782178:1-424 [pilon] NODE_10081_length_321_cov_37.935000:1-321 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 165, Coverage: 17, minDepth: 5 [pilon] Confirmed 271 of 321 bases (84.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10081_length_321_cov_37.935000:1-321 [pilon] Processing NODE_11226_length_274_cov_22.607843:1-274 [pilon] NODE_6269_length_520_cov_0.230576:1-520 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 520 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6269_length_520_cov_0.230576:1-520 [pilon] Processing NODE_10353_length_311_cov_19.973684:1-311 [pilon] NODE_12702_length_243_cov_26.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12702_length_243_cov_26.147541:1-243 [pilon] Processing NODE_8205_length_408_cov_14.898955:1-408 [pilon] NODE_4833_length_632_cov_2.430528:1-632 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 39, Coverage: 7, minDepth: 5 [pilon] Confirmed 408 of 632 bases (64.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4833_length_632_cov_2.430528:1-632 [pilon] Processing NODE_10456_length_306_cov_16.702703:1-306 [pilon] NODE_4995_length_619_cov_1.409639:1-619 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 19, Coverage: 4, minDepth: 5 [pilon] Confirmed 229 of 619 bases (37.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4995_length_619_cov_1.409639:1-619 [pilon] Processing NODE_10168_length_318_cov_21.700508:1-318 [pilon] NODE_3422_length_795_cov_19.115727:1-795 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 302, Coverage: 38, minDepth: 10 [pilon] Confirmed 424 of 795 bases (53.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3422_length_795_cov_19.115727:1-795 [pilon] Processing NODE_10370_length_310_cov_9.190476:1-310 [pilon] NODE_9182_length_358_cov_5.763713:1-358 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 34, Coverage: 4, minDepth: 5 [pilon] Confirmed 138 of 358 bases (38.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9182_length_358_cov_5.763713:1-358 [pilon] Processing NODE_11149_length_278_cov_7.617834:1-278 [pilon] NODE_5318_length_591_cov_12.025532:1-591 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 149, Coverage: 14, minDepth: 5 [pilon] Confirmed 408 of 591 bases (69.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5318_length_591_cov_12.025532:1-591 [pilon] Processing NODE_8701_length_382_cov_16.601533:1-382 [pilon] NODE_11358_length_270_cov_8.208054:1-270 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 270 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11358_length_270_cov_8.208054:1-270 [pilon] Processing NODE_951_length_1527_cov_23.800142:1-1527 [pilon] NODE_3900_length_728_cov_2.032949:1-728 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 34, Coverage: 6, minDepth: 5 [pilon] Confirmed 421 of 728 bases (57.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3900_length_728_cov_2.032949:1-728 [pilon] Processing NODE_13057_length_243_cov_22.336066:1-243 [pilon] NODE_13025_length_243_cov_22.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13025_length_243_cov_22.672131:1-243 [pilon] Processing NODE_4503_length_661_cov_42.720370:1-661 [pilon] NODE_281_length_2277_cov_12.262987:1-2277 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 640, Coverage: 27, minDepth: 7 [pilon] Confirmed 1752 of 2277 bases (76.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_281_length_2277_cov_12.262987:1-2277 [pilon] Processing NODE_9956_length_327_cov_23.839806:1-327 [pilon] NODE_7143_length_463_cov_0.985380:1-463 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 109 of 463 bases (23.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7143_length_463_cov_0.985380:1-463 [pilon] Processing NODE_1288_length_1345_cov_16.852124:1-1345 [pilon] NODE_10070_length_322_cov_25.089552:1-322 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 116, Coverage: 14, minDepth: 5 [pilon] Confirmed 267 of 322 bases (82.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10070_length_322_cov_25.089552:1-322 [pilon] Processing NODE_10738_length_296_cov_33.182857:1-296 [pilon] NODE_8772_length_378_cov_24.813230:1-378 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 139, Coverage: 13, minDepth: 5 [pilon] Confirmed 248 of 378 bases (65.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8772_length_378_cov_24.813230:1-378 [pilon] Processing NODE_12636_length_243_cov_27.049180:1-243 [pilon] NODE_6691_length_491_cov_9.981081:1-491 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 84, Coverage: 21, minDepth: 5 [pilon] Confirmed 431 of 491 bases (87.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6691_length_491_cov_9.981081:1-491 [pilon] Processing NODE_5254_length_596_cov_17.294737:1-596 [pilon] NODE_3509_length_782_cov_1.205749:1-782 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 230 of 782 bases (29.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3509_length_782_cov_1.205749:1-782 [pilon] Processing NODE_917_length_1546_cov_22.197895:1-1546 [pilon] NODE_13212_length_243_cov_20.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13212_length_243_cov_20.975410:1-243 [pilon] Processing NODE_13796_length_243_cov_15.745902:1-243 [pilon] NODE_10965_length_285_cov_20.219512:1-285 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 76, Coverage: 5, minDepth: 5 [pilon] Confirmed 156 of 285 bases (54.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10965_length_285_cov_20.219512:1-285 [pilon] Processing NODE_881_length_1575_cov_15.211829:1-1575 [pilon] NODE_10456_length_306_cov_16.702703:1-306 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 72, Coverage: 2, minDepth: 5 [pilon] Confirmed 79 of 306 bases (25.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10456_length_306_cov_16.702703:1-306 [pilon] Processing NODE_13423_length_243_cov_19.081967:1-243 [pilon] NODE_4583_length_655_cov_2.653558:1-655 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 41, Coverage: 8, minDepth: 5 [pilon] Confirmed 494 of 655 bases (75.42%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4583_length_655_cov_2.653558:1-655 [pilon] Processing NODE_13158_length_243_cov_21.467213:1-243 [pilon] NODE_9765_length_336_cov_11.055814:1-336 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 56, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 336 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9765_length_336_cov_11.055814:1-336 [pilon] Processing NODE_11377_length_268_cov_15.020408:1-268 [pilon] NODE_9587_length_342_cov_19.791855:1-342 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 82, Coverage: 5, minDepth: 5 [pilon] Confirmed 144 of 342 bases (42.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9587_length_342_cov_19.791855:1-342 [pilon] Processing NODE_4229_length_690_cov_1.594025:1-690 [pilon] NODE_9502_length_345_cov_29.174107:1-345 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 146, Coverage: 23, minDepth: 6 [pilon] Confirmed 268 of 345 bases (77.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9502_length_345_cov_29.174107:1-345 [pilon] Processing NODE_9939_length_328_cov_12.347826:1-328 [pilon] NODE_8757_length_380_cov_9.262548:1-380 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 46, Coverage: 7, minDepth: 5 [pilon] Confirmed 185 of 380 bases (48.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8757_length_380_cov_9.262548:1-380 [pilon] Processing NODE_2226_length_1027_cov_30.949227:1-1027 [pilon] NODE_7867_length_424_cov_8.782178:1-424 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 58, Coverage: 4, minDepth: 5 [pilon] Confirmed 228 of 424 bases (53.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7867_length_424_cov_8.782178:1-424 [pilon] Processing NODE_4934_length_624_cov_0.836978:1-624 [pilon] NODE_6936_length_475_cov_21.474576:1-475 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 184, Coverage: 32, minDepth: 8 [pilon] Confirmed 404 of 475 bases (85.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6936_length_475_cov_21.474576:1-475 [pilon] Processing NODE_938_length_1536_cov_8.859364:1-1536 [pilon] NODE_10191_length_318_cov_10.055838:1-318 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 42, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 318 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10191_length_318_cov_10.055838:1-318 [pilon] Processing NODE_85_length_3132_cov_22.957821:1-3132 [pilon] NODE_10168_length_318_cov_21.700508:1-318 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 100, Coverage: 8, minDepth: 5 [pilon] Confirmed 164 of 318 bases (51.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10168_length_318_cov_21.700508:1-318 [pilon] Processing NODE_7201_length_460_cov_1.141593:1-460 [pilon] NODE_8701_length_382_cov_16.601533:1-382 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 81, Coverage: 10, minDepth: 5 [pilon] Confirmed 230 of 382 bases (60.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8701_length_382_cov_16.601533:1-382 [pilon] Processing NODE_2738_length_921_cov_2.220000:1-921 [pilon] NODE_10353_length_311_cov_19.973684:1-311 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 81, Coverage: 8, minDepth: 5 [pilon] Confirmed 169 of 311 bases (54.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10353_length_311_cov_19.973684:1-311 [pilon] Processing NODE_11620_length_258_cov_37.781022:1-258 [pilon] NODE_11149_length_278_cov_7.617834:1-278 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 278 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11149_length_278_cov_7.617834:1-278 [pilon] Processing NODE_14681_length_243_cov_8.737705:1-243 [pilon] NODE_10235_length_315_cov_25.010309:1-315 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 111, Coverage: 13, minDepth: 5 [pilon] Confirmed 268 of 315 bases (85.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10235_length_315_cov_25.010309:1-315 [pilon] Processing NODE_13872_length_243_cov_15.114754:1-243 [pilon] NODE_11226_length_274_cov_22.607843:1-274 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 104, Coverage: 14, minDepth: 5 [pilon] Confirmed 242 of 274 bases (88.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11226_length_274_cov_22.607843:1-274 [pilon] Processing NODE_1109_length_1436_cov_22.487452:1-1436 [pilon] NODE_8205_length_408_cov_14.898955:1-408 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 100, Coverage: 11, minDepth: 5 [pilon] Confirmed 209 of 408 bases (51.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8205_length_408_cov_14.898955:1-408 [pilon] Processing NODE_4083_length_707_cov_20.436860:1-707 [pilon] NODE_951_length_1527_cov_23.800142:1-1527 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 887, Coverage: 52, minDepth: 13 [pilon] Confirmed 1144 of 1527 bases (74.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_951_length_1527_cov_23.800142:1-1527 [pilon] Processing NODE_7386_length_449_cov_2.442073:1-449 [pilon] NODE_10370_length_310_cov_9.190476:1-310 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 39, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 310 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10370_length_310_cov_9.190476:1-310 [pilon] Processing NODE_10325_length_312_cov_20.764398:1-312 [pilon] NODE_1288_length_1345_cov_16.852124:1-1345 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 505, Coverage: 31, minDepth: 8 [pilon] Confirmed 924 of 1345 bases (68.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1288_length_1345_cov_16.852124:1-1345 [pilon] Processing NODE_10207_length_317_cov_14.765306:1-317 [pilon] NODE_5118_length_608_cov_33.209446:1-608 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 423, Coverage: 49, minDepth: 12 [pilon] Confirmed 438 of 608 bases (72.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5118_length_608_cov_33.209446:1-608 [pilon] Processing NODE_13389_length_243_cov_19.450820:1-243 [pilon] NODE_4503_length_661_cov_42.720370:1-661 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 517, Coverage: 60, minDepth: 15 [pilon] Confirmed 512 of 661 bases (77.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4503_length_661_cov_42.720370:1-661 [pilon] Processing NODE_6121_length_530_cov_27.848411:1-530 [pilon] NODE_10738_length_296_cov_33.182857:1-296 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 151, Coverage: 6, minDepth: 5 [pilon] Confirmed 187 of 296 bases (63.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10738_length_296_cov_33.182857:1-296 [pilon] Processing NODE_2266_length_1017_cov_37.493304:1-1017 [pilon] NODE_13057_length_243_cov_22.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13057_length_243_cov_22.336066:1-243 [pilon] Processing NODE_13324_length_243_cov_20.065574:1-243 [pilon] NODE_9939_length_328_cov_12.347826:1-328 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 69, Coverage: 3, minDepth: 5 [pilon] Confirmed 36 of 328 bases (10.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9939_length_328_cov_12.347826:1-328 [pilon] Processing NODE_287_length_2269_cov_31.664804:1-2269 [pilon] NODE_12636_length_243_cov_27.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12636_length_243_cov_27.049180:1-243 [pilon] Processing NODE_3130_length_846_cov_9.908966:1-846 [pilon] NODE_9956_length_327_cov_23.839806:1-327 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 108, Coverage: 3, minDepth: 5 [pilon] Confirmed 100 of 327 bases (30.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9956_length_327_cov_23.839806:1-327 [pilon] Processing NODE_14396_length_243_cov_11.090164:1-243 [pilon] NODE_917_length_1546_cov_22.197895:1-1546 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 782, Coverage: 30, minDepth: 8 [pilon] Confirmed 1308 of 1546 bases (84.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_917_length_1546_cov_22.197895:1-1546 [pilon] Processing NODE_1066_length_1457_cov_26.265719:1-1457 [pilon] NODE_11377_length_268_cov_15.020408:1-268 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 57, Coverage: 8, minDepth: 5 [pilon] Confirmed 219 of 268 bases (81.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11377_length_268_cov_15.020408:1-268 [pilon] Processing NODE_2865_length_899_cov_37.033419:1-899 [pilon] NODE_13158_length_243_cov_21.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13158_length_243_cov_21.467213:1-243 [pilon] Processing NODE_11549_length_262_cov_11.687943:1-262 [pilon] NODE_881_length_1575_cov_15.211829:1-1575 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 467, Coverage: 38, minDepth: 10 [pilon] Confirmed 1133 of 1575 bases (71.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_881_length_1575_cov_15.211829:1-1575 [pilon] Processing NODE_9556_length_344_cov_10.026906:1-344 [pilon] NODE_5254_length_596_cov_17.294737:1-596 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 191, Coverage: 17, minDepth: 5 [pilon] Confirmed 433 of 596 bases (72.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5254_length_596_cov_17.294737:1-596 [pilon] Processing NODE_4402_length_671_cov_12.329091:1-671 [pilon] NODE_2226_length_1027_cov_30.949227:1-1027 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 715, Coverage: 51, minDepth: 13 [pilon] Confirmed 815 of 1027 bases (79.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2226_length_1027_cov_30.949227:1-1027 [pilon] Processing NODE_1311_length_1336_cov_2.540741:1-1336 [pilon] NODE_13423_length_243_cov_19.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13423_length_243_cov_19.081967:1-243 [pilon] Processing NODE_8629_length_387_cov_13.312030:1-387 [pilon] NODE_13796_length_243_cov_15.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13796_length_243_cov_15.745902:1-243 [pilon] Processing NODE_12066_length_245_cov_15.451613:1-245 [pilon] NODE_14681_length_243_cov_8.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14681_length_243_cov_8.737705:1-243 [pilon] Processing NODE_9214_length_357_cov_17.754237:1-357 [pilon] NODE_11620_length_258_cov_37.781022:1-258 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 121, Coverage: 12, minDepth: 5 [pilon] Confirmed 194 of 258 bases (75.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11620_length_258_cov_37.781022:1-258 [pilon] Processing NODE_857_length_1593_cov_2.269022:1-1593 [pilon] NODE_13872_length_243_cov_15.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13872_length_243_cov_15.114754:1-243 [pilon] Processing NODE_3261_length_822_cov_18.315264:1-822 [pilon] NODE_85_length_3132_cov_22.957821:1-3132 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1623, Coverage: 54, minDepth: 14 [pilon] Confirmed 2667 of 3132 bases (85.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_85_length_3132_cov_22.957821:1-3132 [pilon] Processing NODE_7460_length_445_cov_18.793210:1-445 [pilon] NODE_4229_length_690_cov_1.594025:1-690 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 28, Coverage: 5, minDepth: 5 [pilon] Confirmed 335 of 690 bases (48.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4229_length_690_cov_1.594025:1-690 [pilon] Processing NODE_15043_length_241_cov_28.133333:1-241 [pilon] NODE_10325_length_312_cov_20.764398:1-312 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 84, Coverage: 8, minDepth: 5 [pilon] Confirmed 207 of 312 bases (66.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10325_length_312_cov_20.764398:1-312 [pilon] Processing NODE_13907_length_243_cov_14.844262:1-243 [pilon] NODE_1109_length_1436_cov_22.487452:1-1436 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 716, Coverage: 57, minDepth: 14 [pilon] Confirmed 1253 of 1436 bases (87.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1109_length_1436_cov_22.487452:1-1436 [pilon] Processing NODE_1173_length_1409_cov_2.249224:1-1409 [pilon] NODE_7386_length_449_cov_2.442073:1-449 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 31, Coverage: 6, minDepth: 5 [pilon] Confirmed 233 of 449 bases (51.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7386_length_449_cov_2.442073:1-449 [pilon] Processing NODE_12220_length_243_cov_35.762295:1-243 [pilon] NODE_13389_length_243_cov_19.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13389_length_243_cov_19.450820:1-243 [pilon] Processing NODE_14094_length_243_cov_13.491803:1-243 [pilon] NODE_4934_length_624_cov_0.836978:1-624 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 19, Coverage: 3, minDepth: 5 [pilon] Confirmed 261 of 624 bases (41.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4934_length_624_cov_0.836978:1-624 [pilon] Processing NODE_147_length_2730_cov_13.704101:1-2730 [pilon] NODE_7201_length_460_cov_1.141593:1-460 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 113 of 460 bases (24.57%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7201_length_460_cov_1.141593:1-460 [pilon] Processing NODE_11122_length_279_cov_12.987342:1-279 [pilon] NODE_4083_length_707_cov_20.436860:1-707 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 262, Coverage: 43, minDepth: 11 [pilon] Confirmed 508 of 707 bases (71.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4083_length_707_cov_20.436860:1-707 [pilon] Processing NODE_14184_length_243_cov_12.754098:1-243 [pilon] NODE_938_length_1536_cov_8.859364:1-1536 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 301, Coverage: 15, minDepth: 5 [pilon] Confirmed 1138 of 1536 bases (74.09%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_938_length_1536_cov_8.859364:1-1536 [pilon] Processing NODE_14047_length_243_cov_13.852459:1-243 [pilon] NODE_6121_length_530_cov_27.848411:1-530 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 262, Coverage: 29, minDepth: 7 [pilon] Confirmed 371 of 530 bases (70.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6121_length_530_cov_27.848411:1-530 [pilon] Processing NODE_7987_length_419_cov_1.372483:1-419 [pilon] NODE_2738_length_921_cov_2.220000:1-921 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 46, Coverage: 6, minDepth: 5 [pilon] Confirmed 498 of 921 bases (54.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2738_length_921_cov_2.220000:1-921 [pilon] Processing NODE_4209_length_692_cov_42.050788:1-692 [pilon] NODE_10207_length_317_cov_14.765306:1-317 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 53, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 317 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10207_length_317_cov_14.765306:1-317 [pilon] Processing NODE_10366_length_310_cov_15.486772:1-310 [pilon] NODE_3130_length_846_cov_9.908966:1-846 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 193, Coverage: 23, minDepth: 6 [pilon] Confirmed 758 of 846 bases (89.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3130_length_846_cov_9.908966:1-846 [pilon] Processing NODE_2970_length_879_cov_14.468338:1-879 [pilon] NODE_13324_length_243_cov_20.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13324_length_243_cov_20.065574:1-243 [pilon] Processing NODE_10172_length_318_cov_20.228426:1-318 [pilon] NODE_2266_length_1017_cov_37.493304:1-1017 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 773, Coverage: 86, minDepth: 22 [pilon] Confirmed 903 of 1017 bases (88.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2266_length_1017_cov_37.493304:1-1017 [pilon] Processing NODE_14019_length_243_cov_14.040984:1-243 [pilon] NODE_287_length_2269_cov_31.664804:1-2269 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 1755, Coverage: 56, minDepth: 14 [pilon] Confirmed 2148 of 2269 bases (94.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_287_length_2269_cov_31.664804:1-2269 [pilon] Processing NODE_3838_length_735_cov_31.034202:1-735 [pilon] NODE_9556_length_344_cov_10.026906:1-344 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 57, Coverage: 3, minDepth: 5 [pilon] Confirmed 117 of 344 bases (34.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9556_length_344_cov_10.026906:1-344 [pilon] Processing NODE_9578_length_342_cov_24.574661:1-342 [pilon] NODE_1066_length_1457_cov_26.265719:1-1457 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 892, Coverage: 47, minDepth: 12 [pilon] Confirmed 1125 of 1457 bases (77.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1066_length_1457_cov_26.265719:1-1457 [pilon] Processing NODE_1855_length_1127_cov_1.487078:1-1127 [pilon] NODE_2865_length_899_cov_37.033419:1-899 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 663, Coverage: 85, minDepth: 21 [pilon] Confirmed 737 of 899 bases (81.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2865_length_899_cov_37.033419:1-899 [pilon] Processing NODE_14305_length_243_cov_11.795082:1-243 [pilon] NODE_11549_length_262_cov_11.687943:1-262 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 37, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 262 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11549_length_262_cov_11.687943:1-262 [pilon] Processing NODE_2693_length_930_cov_16.870210:1-930 [pilon] NODE_4402_length_671_cov_12.329091:1-671 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 144, Coverage: 24, minDepth: 6 [pilon] Confirmed 493 of 671 bases (73.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4402_length_671_cov_12.329091:1-671 [pilon] Processing NODE_6124_length_530_cov_3.784841:1-530 [pilon] NODE_8629_length_387_cov_13.312030:1-387 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 88, Coverage: 16, minDepth: 5 [pilon] Confirmed 316 of 387 bases (81.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8629_length_387_cov_13.312030:1-387 [pilon] Processing NODE_15075_length_236_cov_4.400000:1-236 [pilon] NODE_14184_length_243_cov_12.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14184_length_243_cov_12.754098:1-243 [pilon] Processing NODE_5971_length_543_cov_21.092417:1-543 [pilon] NODE_14396_length_243_cov_11.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14396_length_243_cov_11.090164:1-243 [pilon] Processing NODE_1971_length_1093_cov_31.199588:1-1093 [pilon] NODE_13907_length_243_cov_14.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13907_length_243_cov_14.844262:1-243 [pilon] Processing NODE_1775_length_1154_cov_49.160697:1-1154 [pilon] NODE_9214_length_357_cov_17.754237:1-357 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 65, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 357 bases (35.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9214_length_357_cov_17.754237:1-357 [pilon] Processing NODE_14415_length_243_cov_10.934426:1-243 [pilon] NODE_1311_length_1336_cov_2.540741:1-1336 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 87, Coverage: 8, minDepth: 5 [pilon] Confirmed 812 of 1336 bases (60.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1311_length_1336_cov_2.540741:1-1336 [pilon] Processing NODE_8417_length_398_cov_60.592058:1-398 [pilon] NODE_12066_length_245_cov_15.451613:1-245 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 34, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 245 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12066_length_245_cov_15.451613:1-245 [pilon] Processing NODE_13884_length_243_cov_15.016393:1-243 [pilon] NODE_7460_length_445_cov_18.793210:1-445 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 129, Coverage: 21, minDepth: 5 [pilon] Confirmed 384 of 445 bases (86.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7460_length_445_cov_18.793210:1-445 [pilon] Processing NODE_10783_length_294_cov_16.439306:1-294 [pilon] NODE_857_length_1593_cov_2.269022:1-1593 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 90, Coverage: 7, minDepth: 5 [pilon] Confirmed 1085 of 1593 bases (68.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_857_length_1593_cov_2.269022:1-1593 [pilon] Processing NODE_9735_length_336_cov_29.906977:1-336 [pilon] NODE_3261_length_822_cov_18.315264:1-822 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 360, Coverage: 47, minDepth: 12 [pilon] Confirmed 575 of 822 bases (69.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3261_length_822_cov_18.315264:1-822 [pilon] Processing NODE_11239_length_274_cov_7.215686:1-274 [pilon] NODE_12220_length_243_cov_35.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12220_length_243_cov_35.762295:1-243 [pilon] Processing NODE_9720_length_337_cov_9.777778:1-337 [pilon] NODE_15043_length_241_cov_28.133333:1-241 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 61, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 241 bases (53.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15043_length_241_cov_28.133333:1-241 [pilon] Processing NODE_9350_length_352_cov_9.220779:1-352 [pilon] NODE_14094_length_243_cov_13.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14094_length_243_cov_13.491803:1-243 [pilon] Processing NODE_9363_length_351_cov_24.073913:1-351 [pilon] NODE_1173_length_1409_cov_2.249224:1-1409 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 86, Coverage: 8, minDepth: 5 [pilon] Confirmed 962 of 1409 bases (68.28%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1173_length_1409_cov_2.249224:1-1409 [pilon] Processing NODE_6494_length_504_cov_10.699739:1-504 [pilon] NODE_2970_length_879_cov_14.468338:1-879 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 311, Coverage: 25, minDepth: 6 [pilon] Confirmed 748 of 879 bases (85.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2970_length_879_cov_14.468338:1-879 [pilon] Processing NODE_13482_length_243_cov_18.549180:1-243 [pilon] NODE_11122_length_279_cov_12.987342:1-279 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 41, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11122_length_279_cov_12.987342:1-279 [pilon] Processing NODE_3129_length_846_cov_18.368276:1-846 [pilon] NODE_14047_length_243_cov_13.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14047_length_243_cov_13.852459:1-243 [pilon] NODE_7987_length_419_cov_1.372483:1-419 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 419 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_13909_length_243_cov_14.819672:1-243 [pilon] Finished processing NODE_7987_length_419_cov_1.372483:1-419 [pilon] Processing NODE_10421_length_308_cov_9.326203:1-308 [pilon] NODE_10366_length_310_cov_15.486772:1-310 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 41, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 310 bases (41.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10366_length_310_cov_15.486772:1-310 [pilon] Processing NODE_10412_length_308_cov_21.582888:1-308 [pilon] NODE_147_length_2730_cov_13.704101:1-2730 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 981, Coverage: 38, minDepth: 10 [pilon] Confirmed 2169 of 2730 bases (79.45%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_147_length_2730_cov_13.704101:1-2730 [pilon] Processing NODE_10089_length_321_cov_23.985000:1-321 [pilon] NODE_4209_length_692_cov_42.050788:1-692 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 534, Coverage: 81, minDepth: 20 [pilon] Confirmed 557 of 692 bases (80.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4209_length_692_cov_42.050788:1-692 [pilon] Processing NODE_7662_length_434_cov_60.581470:1-434 [pilon] NODE_10172_length_318_cov_20.228426:1-318 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 88, Coverage: 9, minDepth: 5 [pilon] Confirmed 239 of 318 bases (75.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10172_length_318_cov_20.228426:1-318 [pilon] Processing NODE_8615_length_387_cov_22.815789:1-387 [pilon] NODE_8417_length_398_cov_60.592058:1-398 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 397, Coverage: 58, minDepth: 15 [pilon] Confirmed 354 of 398 bases (88.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8417_length_398_cov_60.592058:1-398 [pilon] Processing NODE_10555_length_303_cov_9.906593:1-303 [pilon] NODE_14019_length_243_cov_14.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14019_length_243_cov_14.040984:1-243 [pilon] Processing NODE_11244_length_273_cov_29.631579:1-273 [pilon] NODE_1775_length_1154_cov_49.160697:1-1154 log: [pilon] frags shovill.bam: coverage 112 [pilon] Total Reads: 1119, Coverage: 112, minDepth: 28 [pilon] Confirmed 1014 of 1154 bases (87.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1775_length_1154_cov_49.160697:1-1154 [pilon] Processing NODE_11536_length_262_cov_27.014184:1-262 [pilon] NODE_14305_length_243_cov_11.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14305_length_243_cov_11.795082:1-243 [pilon] Processing NODE_12622_length_243_cov_27.278689:1-243 [pilon] NODE_3838_length_735_cov_31.034202:1-735 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 434, Coverage: 62, minDepth: 16 [pilon] Confirmed 622 of 735 bases (84.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3838_length_735_cov_31.034202:1-735 [pilon] NODE_9578_length_342_cov_24.574661:1-342 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 128, Coverage: 18, minDepth: 5 [pilon] Confirmed 320 of 342 bases (93.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9578_length_342_cov_24.574661:1-342 [pilon] Processing NODE_10204_length_317_cov_21.010204:1-317 [pilon] Processing NODE_8008_length_418_cov_1.299663:1-418 [pilon] NODE_1855_length_1127_cov_1.487078:1-1127 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 57, Coverage: 6, minDepth: 5 [pilon] Confirmed 603 of 1127 bases (53.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1855_length_1127_cov_1.487078:1-1127 [pilon] Processing NODE_1371_length_1310_cov_2.024390:1-1310 [pilon] NODE_6124_length_530_cov_3.784841:1-530 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 259 of 530 bases (48.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6124_length_530_cov_3.784841:1-530 [pilon] Processing NODE_5356_length_588_cov_1.972163:1-588 [pilon] NODE_2693_length_930_cov_16.870210:1-930 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 333, Coverage: 23, minDepth: 6 [pilon] Confirmed 800 of 930 bases (86.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2693_length_930_cov_16.870210:1-930 [pilon] Processing NODE_5593_length_571_cov_2.680000:1-571 [pilon] NODE_14415_length_243_cov_10.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14415_length_243_cov_10.934426:1-243 [pilon] Processing NODE_12747_length_243_cov_25.614754:1-243 [pilon] NODE_5971_length_543_cov_21.092417:1-543 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 206, Coverage: 27, minDepth: 7 [pilon] Confirmed 343 of 543 bases (63.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5971_length_543_cov_21.092417:1-543 [pilon] Processing NODE_11294_length_273_cov_6.092105:1-273 [pilon] NODE_15075_length_236_cov_4.400000:1-236 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 13, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 236 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15075_length_236_cov_4.400000:1-236 [pilon] Processing NODE_14072_length_243_cov_13.663934:1-243 [pilon] NODE_13482_length_243_cov_18.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13482_length_243_cov_18.549180:1-243 [pilon] Processing NODE_14644_length_243_cov_9.065574:1-243 [pilon] NODE_13884_length_243_cov_15.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13884_length_243_cov_15.016393:1-243 [pilon] Processing NODE_10205_length_317_cov_18.045918:1-317 [pilon] NODE_1971_length_1093_cov_31.199588:1-1093 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 688, Coverage: 72, minDepth: 18 [pilon] Confirmed 804 of 1093 bases (73.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1971_length_1093_cov_31.199588:1-1093 [pilon] Processing NODE_7716_length_432_cov_7.591640:1-432 [pilon] NODE_10783_length_294_cov_16.439306:1-294 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 48, Coverage: 3, minDepth: 5 [pilon] Confirmed 85 of 294 bases (28.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10783_length_294_cov_16.439306:1-294 [pilon] Processing NODE_6512_length_503_cov_2.984293:1-503 [pilon] NODE_9735_length_336_cov_29.906977:1-336 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 146, Coverage: 19, minDepth: 5 [pilon] Confirmed 267 of 336 bases (79.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9735_length_336_cov_29.906977:1-336 [pilon] Processing NODE_11556_length_261_cov_31.785714:1-261 [pilon] NODE_9720_length_337_cov_9.777778:1-337 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 52, Coverage: 2, minDepth: 5 [pilon] Confirmed 94 of 337 bases (27.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9720_length_337_cov_9.777778:1-337 [pilon] Processing NODE_3533_length_779_cov_15.489362:1-779 [pilon] NODE_9350_length_352_cov_9.220779:1-352 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 48, Coverage: 6, minDepth: 5 [pilon] Confirmed 182 of 352 bases (51.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9350_length_352_cov_9.220779:1-352 [pilon] Processing NODE_14290_length_243_cov_11.926230:1-243 [pilon] NODE_9363_length_351_cov_24.073913:1-351 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 111, Coverage: 5, minDepth: 5 [pilon] Confirmed 137 of 351 bases (39.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9363_length_351_cov_24.073913:1-351 [pilon] Processing NODE_12856_length_243_cov_24.475410:1-243 [pilon] NODE_11239_length_274_cov_7.215686:1-274 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 274 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11239_length_274_cov_7.215686:1-274 [pilon] Processing NODE_3418_length_796_cov_0.946667:1-796 [pilon] NODE_6494_length_504_cov_10.699739:1-504 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 87, Coverage: 14, minDepth: 5 [pilon] Confirmed 424 of 504 bases (84.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6494_length_504_cov_10.699739:1-504 [pilon] Processing NODE_11242_length_273_cov_30.013158:1-273 [pilon] NODE_10412_length_308_cov_21.582888:1-308 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 92, Coverage: 5, minDepth: 5 [pilon] Confirmed 157 of 308 bases (50.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10412_length_308_cov_21.582888:1-308 [pilon] Processing NODE_8884_length_372_cov_31.390438:1-372 [pilon] NODE_13909_length_243_cov_14.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13909_length_243_cov_14.819672:1-243 [pilon] Processing NODE_7486_length_444_cov_1.532508:1-444 [pilon] NODE_10421_length_308_cov_9.326203:1-308 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 37, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 308 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10421_length_308_cov_9.326203:1-308 [pilon] Processing NODE_3303_length_815_cov_1.406340:1-815 [pilon] NODE_10555_length_303_cov_9.906593:1-303 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 42, Coverage: 6, minDepth: 5 [pilon] Confirmed 174 of 303 bases (57.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10555_length_303_cov_9.906593:1-303 [pilon] Processing NODE_12509_length_243_cov_28.967213:1-243 [pilon] NODE_10089_length_321_cov_23.985000:1-321 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 107, Coverage: 15, minDepth: 5 [pilon] Confirmed 226 of 321 bases (70.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10089_length_321_cov_23.985000:1-321 [pilon] Processing NODE_13040_length_243_cov_22.540984:1-243 [pilon] NODE_3129_length_846_cov_18.368276:1-846 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 337, Coverage: 32, minDepth: 8 [pilon] Confirmed 702 of 846 bases (82.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3129_length_846_cov_18.368276:1-846 [pilon] Processing NODE_2600_length_945_cov_19.516990:1-945 [pilon] NODE_11536_length_262_cov_27.014184:1-262 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 74, Coverage: 5, minDepth: 5 [pilon] Confirmed 153 of 262 bases (58.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11536_length_262_cov_27.014184:1-262 [pilon] Processing NODE_3705_length_754_cov_2.067930:1-754 [pilon] NODE_7662_length_434_cov_60.581470:1-434 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 427, Coverage: 74, minDepth: 19 [pilon] Confirmed 387 of 434 bases (89.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7662_length_434_cov_60.581470:1-434 [pilon] Processing NODE_9750_length_336_cov_16.283721:1-336 [pilon] NODE_8615_length_387_cov_22.815789:1-387 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 127, Coverage: 19, minDepth: 5 [pilon] Confirmed 294 of 387 bases (75.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8615_length_387_cov_22.815789:1-387 [pilon] Processing NODE_14471_length_243_cov_10.491803:1-243 [pilon] NODE_14644_length_243_cov_9.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14644_length_243_cov_9.065574:1-243 [pilon] Processing NODE_8049_length_416_cov_0.776271:1-416 [pilon] NODE_11244_length_273_cov_29.631579:1-273 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 105, Coverage: 8, minDepth: 5 [pilon] Confirmed 189 of 273 bases (69.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11244_length_273_cov_29.631579:1-273 [pilon] Processing NODE_1813_length_1144_cov_2.362659:1-1144 [pilon] NODE_12622_length_243_cov_27.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12622_length_243_cov_27.278689:1-243 [pilon] Processing NODE_12455_length_243_cov_29.803279:1-243 [pilon] NODE_8008_length_418_cov_1.299663:1-418 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 418 bases (30.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8008_length_418_cov_1.299663:1-418 [pilon] Processing NODE_14295_length_243_cov_11.868852:1-243 [pilon] NODE_10204_length_317_cov_21.010204:1-317 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 79, Coverage: 5, minDepth: 5 [pilon] Confirmed 155 of 317 bases (48.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10204_length_317_cov_21.010204:1-317 [pilon] Processing NODE_9851_length_332_cov_25.170616:1-332 [pilon] NODE_5356_length_588_cov_1.972163:1-588 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 350 of 588 bases (59.52%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5356_length_588_cov_1.972163:1-588 [pilon] Processing NODE_12930_length_243_cov_23.655738:1-243 [pilon] NODE_1371_length_1310_cov_2.024390:1-1310 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 64, Coverage: 6, minDepth: 5 [pilon] Confirmed 823 of 1310 bases (62.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1371_length_1310_cov_2.024390:1-1310 [pilon] Processing NODE_7897_length_423_cov_8.923841:1-423 [pilon] NODE_5593_length_571_cov_2.680000:1-571 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 49, Coverage: 9, minDepth: 5 [pilon] Confirmed 381 of 571 bases (66.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5593_length_571_cov_2.680000:1-571 [pilon] Processing NODE_7028_length_470_cov_0.647564:1-470 [pilon] NODE_11294_length_273_cov_6.092105:1-273 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 20, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11294_length_273_cov_6.092105:1-273 [pilon] Processing NODE_12471_length_243_cov_29.614754:1-243 [pilon] NODE_12747_length_243_cov_25.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12747_length_243_cov_25.614754:1-243 [pilon] Processing NODE_12052_length_245_cov_30.830645:1-245 [pilon] NODE_14072_length_243_cov_13.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14072_length_243_cov_13.663934:1-243 [pilon] Processing NODE_8963_length_368_cov_28.327935:1-368 [pilon] NODE_12509_length_243_cov_28.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12509_length_243_cov_28.967213:1-243 [pilon] Processing NODE_12430_length_243_cov_30.311475:1-243 [pilon] NODE_7716_length_432_cov_7.591640:1-432 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 65, Coverage: 6, minDepth: 5 [pilon] Confirmed 322 of 432 bases (74.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7716_length_432_cov_7.591640:1-432 [pilon] Processing NODE_2783_length_912_cov_1.058154:1-912 [pilon] NODE_10205_length_317_cov_18.045918:1-317 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 106, Coverage: 11, minDepth: 5 [pilon] Confirmed 283 of 317 bases (89.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10205_length_317_cov_18.045918:1-317 [pilon] Processing NODE_14168_length_243_cov_12.926230:1-243 [pilon] NODE_3705_length_754_cov_2.067930:1-754 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 430 of 754 bases (57.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3705_length_754_cov_2.067930:1-754 [pilon] Processing NODE_12704_length_243_cov_26.131148:1-243 [pilon] NODE_11556_length_261_cov_31.785714:1-261 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 88, Coverage: 9, minDepth: 5 [pilon] Confirmed 210 of 261 bases (80.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11556_length_261_cov_31.785714:1-261 [pilon] NODE_6512_length_503_cov_2.984293:1-503 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 36, Coverage: 9, minDepth: 5 [pilon] Confirmed 370 of 503 bases (73.56%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_10549_length_303_cov_14.285714:1-303 [pilon] Finished processing NODE_6512_length_503_cov_2.984293:1-503 [pilon] Processing NODE_9191_length_357_cov_29.576271:1-357 [pilon] NODE_3533_length_779_cov_15.489362:1-779 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 306, Coverage: 32, minDepth: 8 [pilon] Confirmed 742 of 779 bases (95.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3533_length_779_cov_15.489362:1-779 [pilon] Processing NODE_14232_length_243_cov_12.344262:1-243 [pilon] NODE_14290_length_243_cov_11.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14290_length_243_cov_11.926230:1-243 [pilon] Processing NODE_4045_length_711_cov_1.196610:1-711 [pilon] NODE_12856_length_243_cov_24.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12856_length_243_cov_24.475410:1-243 [pilon] Processing NODE_393_length_2061_cov_1.969072:1-2061 [pilon] NODE_3418_length_796_cov_0.946667:1-796 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 21, Coverage: 3, minDepth: 5 [pilon] Confirmed 141 of 796 bases (17.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3418_length_796_cov_0.946667:1-796 [pilon] Processing NODE_5251_length_597_cov_0.855042:1-597 [pilon] NODE_8884_length_372_cov_31.390438:1-372 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 180, Coverage: 33, minDepth: 8 [pilon] Confirmed 338 of 372 bases (90.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8884_length_372_cov_31.390438:1-372 [pilon] Processing NODE_3404_length_798_cov_2.680945:1-798 [pilon] NODE_13040_length_243_cov_22.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13040_length_243_cov_22.540984:1-243 [pilon] Processing NODE_12845_length_243_cov_24.557377:1-243 [pilon] NODE_8049_length_416_cov_0.776271:1-416 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 416 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8049_length_416_cov_0.776271:1-416 [pilon] Processing NODE_3205_length_832_cov_13.957806:1-832 [pilon] NODE_7486_length_444_cov_1.532508:1-444 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 17, Coverage: 5, minDepth: 5 [pilon] Confirmed 225 of 444 bases (50.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7486_length_444_cov_1.532508:1-444 [pilon] Processing NODE_5713_length_562_cov_20.918367:1-562 [pilon] NODE_3303_length_815_cov_1.406340:1-815 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 36, Coverage: 6, minDepth: 5 [pilon] Confirmed 304 of 815 bases (37.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3303_length_815_cov_1.406340:1-815 [pilon] Processing NODE_3808_length_740_cov_1.621971:1-740 [pilon] NODE_11242_length_273_cov_30.013158:1-273 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 103, Coverage: 9, minDepth: 5 [pilon] Confirmed 207 of 273 bases (75.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11242_length_273_cov_30.013158:1-273 [pilon] Processing NODE_8163_length_410_cov_30.782007:1-410 [pilon] NODE_2600_length_945_cov_19.516990:1-945 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 369, Coverage: 30, minDepth: 8 [pilon] Confirmed 756 of 945 bases (80.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2600_length_945_cov_19.516990:1-945 [pilon] Processing NODE_4769_length_638_cov_2.545455:1-638 [pilon] NODE_14471_length_243_cov_10.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14471_length_243_cov_10.491803:1-243 [pilon] Processing NODE_7188_length_460_cov_27.811209:1-460 [pilon] NODE_9750_length_336_cov_16.283721:1-336 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 51, Coverage: 4, minDepth: 5 [pilon] Confirmed 137 of 336 bases (40.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9750_length_336_cov_16.283721:1-336 [pilon] Processing NODE_15024_length_243_cov_5.139344:1-243 [pilon] NODE_1813_length_1144_cov_2.362659:1-1144 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 54, Coverage: 6, minDepth: 5 [pilon] Confirmed 734 of 1144 bases (64.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1813_length_1144_cov_2.362659:1-1144 [pilon] Processing NODE_11373_length_268_cov_33.299320:1-268 [pilon] NODE_12455_length_243_cov_29.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12455_length_243_cov_29.803279:1-243 [pilon] Processing NODE_10489_length_305_cov_26.130435:1-305 [pilon] NODE_12704_length_243_cov_26.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12704_length_243_cov_26.131148:1-243 [pilon] Processing NODE_7962_length_420_cov_7.923077:1-420 [pilon] NODE_12930_length_243_cov_23.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12930_length_243_cov_23.655738:1-243 [pilon] NODE_14295_length_243_cov_11.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14295_length_243_cov_11.868852:1-243 [pilon] Processing NODE_6716_length_489_cov_18.652174:1-489 [pilon] Processing NODE_9830_length_333_cov_16.179245:1-333 [pilon] NODE_7897_length_423_cov_8.923841:1-423 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 69, Coverage: 10, minDepth: 5 [pilon] Confirmed 285 of 423 bases (67.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7897_length_423_cov_8.923841:1-423 [pilon] Processing NODE_3608_length_767_cov_16.620743:1-767 [pilon] NODE_7028_length_470_cov_0.647564:1-470 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 94 of 470 bases (20.00%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7028_length_470_cov_0.647564:1-470 [pilon] Processing NODE_8687_length_383_cov_28.038168:1-383 [pilon] NODE_9851_length_332_cov_25.170616:1-332 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 70, Coverage: 3, minDepth: 5 [pilon] Confirmed 114 of 332 bases (34.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9851_length_332_cov_25.170616:1-332 [pilon] Processing NODE_11341_length_270_cov_16.597315:1-270 [pilon] NODE_12430_length_243_cov_30.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12430_length_243_cov_30.311475:1-243 [pilon] Processing NODE_7522_length_442_cov_2.102804:1-442 [pilon] NODE_12471_length_243_cov_29.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12471_length_243_cov_29.614754:1-243 [pilon] Processing NODE_3712_length_753_cov_15.854430:1-753 [pilon] NODE_2783_length_912_cov_1.058154:1-912 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 28, Coverage: 4, minDepth: 5 [pilon] Confirmed 304 of 912 bases (33.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2783_length_912_cov_1.058154:1-912 [pilon] Processing NODE_1876_length_1121_cov_1.550000:1-1121 [pilon] NODE_12052_length_245_cov_30.830645:1-245 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 202 of 245 bases (82.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12052_length_245_cov_30.830645:1-245 [pilon] Processing NODE_11778_length_254_cov_10.300752:1-254 [pilon] NODE_14168_length_243_cov_12.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14168_length_243_cov_12.926230:1-243 [pilon] Processing NODE_11295_length_273_cov_5.243421:1-273 [pilon] NODE_8963_length_368_cov_28.327935:1-368 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 160, Coverage: 31, minDepth: 8 [pilon] Confirmed 308 of 368 bases (83.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8963_length_368_cov_28.327935:1-368 [pilon] Processing NODE_8770_length_378_cov_29.544747:1-378 [pilon] NODE_3205_length_832_cov_13.957806:1-832 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 273, Coverage: 30, minDepth: 8 [pilon] Confirmed 629 of 832 bases (75.60%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3205_length_832_cov_13.957806:1-832 [pilon] Processing NODE_5004_length_618_cov_4.048290:1-618 [pilon] NODE_7188_length_460_cov_27.811209:1-460 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 200, Coverage: 19, minDepth: 5 [pilon] Confirmed 353 of 460 bases (76.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7188_length_460_cov_27.811209:1-460 [pilon] Processing NODE_9671_length_339_cov_14.825688:1-339 [pilon] NODE_10549_length_303_cov_14.285714:1-303 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 45, Coverage: 4, minDepth: 5 [pilon] Confirmed 141 of 303 bases (46.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10549_length_303_cov_14.285714:1-303 [pilon] Processing NODE_4463_length_665_cov_2.775735:1-665 [pilon] NODE_9191_length_357_cov_29.576271:1-357 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 123, Coverage: 5, minDepth: 5 [pilon] Confirmed 143 of 357 bases (40.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9191_length_357_cov_29.576271:1-357 [pilon] Processing NODE_8786_length_378_cov_14.408560:1-378 [pilon] NODE_14232_length_243_cov_12.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14232_length_243_cov_12.344262:1-243 [pilon] Processing NODE_6810_length_482_cov_45.202216:1-482 [pilon] NODE_4045_length_711_cov_1.196610:1-711 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 334 of 711 bases (46.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4045_length_711_cov_1.196610:1-711 [pilon] Processing NODE_1976_length_1092_cov_31.303811:1-1092 [pilon] NODE_12845_length_243_cov_24.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12845_length_243_cov_24.557377:1-243 [pilon] Processing NODE_11415_length_267_cov_14.732877:1-267 [pilon] NODE_3404_length_798_cov_2.680945:1-798 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 59, Coverage: 9, minDepth: 5 [pilon] Confirmed 696 of 798 bases (87.22%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3404_length_798_cov_2.680945:1-798 [pilon] Processing NODE_8157_length_411_cov_1.300000:1-411 [pilon] NODE_5251_length_597_cov_0.855042:1-597 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 154 of 597 bases (25.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5251_length_597_cov_0.855042:1-597 [pilon] Processing NODE_2519_length_963_cov_23.705463:1-963 [pilon] NODE_4769_length_638_cov_2.545455:1-638 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 37, Coverage: 8, minDepth: 5 [pilon] Confirmed 421 of 638 bases (65.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4769_length_638_cov_2.545455:1-638 [pilon] Processing NODE_11859_length_251_cov_16.715385:1-251 [pilon] NODE_393_length_2061_cov_1.969072:1-2061 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 125, Coverage: 8, minDepth: 5 [pilon] Confirmed 1359 of 2061 bases (65.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_393_length_2061_cov_1.969072:1-2061 [pilon] Processing NODE_9338_length_353_cov_13.353448:1-353 [pilon] NODE_5713_length_562_cov_20.918367:1-562 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 225, Coverage: 25, minDepth: 6 [pilon] Confirmed 420 of 562 bases (74.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5713_length_562_cov_20.918367:1-562 [pilon] Processing NODE_12951_length_243_cov_23.401639:1-243 [pilon] NODE_15024_length_243_cov_5.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15024_length_243_cov_5.139344:1-243 [pilon] Processing NODE_11883_length_249_cov_28.476562:1-249 [pilon] NODE_3808_length_740_cov_1.621971:1-740 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 414 of 740 bases (55.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3808_length_740_cov_1.621971:1-740 [pilon] Processing NODE_1735_length_1168_cov_19.513849:1-1168 [pilon] NODE_8163_length_410_cov_30.782007:1-410 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 213, Coverage: 35, minDepth: 9 [pilon] Confirmed 359 of 410 bases (87.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8163_length_410_cov_30.782007:1-410 [pilon] Processing NODE_2384_length_993_cov_28.670872:1-993 [pilon] NODE_7962_length_420_cov_7.923077:1-420 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 44, Coverage: 4, minDepth: 5 [pilon] Confirmed 153 of 420 bases (36.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7962_length_420_cov_7.923077:1-420 [pilon] Processing NODE_6300_length_518_cov_3.279597:1-518 [pilon] NODE_11373_length_268_cov_33.299320:1-268 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 97, Coverage: 11, minDepth: 5 [pilon] Confirmed 221 of 268 bases (82.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11373_length_268_cov_33.299320:1-268 [pilon] Processing NODE_3723_length_751_cov_41.715873:1-751 [pilon] NODE_5004_length_618_cov_4.048290:1-618 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 51, Coverage: 10, minDepth: 5 [pilon] Confirmed 462 of 618 bases (74.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5004_length_618_cov_4.048290:1-618 [pilon] Processing NODE_8805_length_377_cov_12.437500:1-377 [pilon] NODE_9830_length_333_cov_16.179245:1-333 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 65, Coverage: 6, minDepth: 5 [pilon] Confirmed 164 of 333 bases (49.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9830_length_333_cov_16.179245:1-333 [pilon] Processing NODE_12201_length_243_cov_36.704918:1-243 [pilon] NODE_9671_length_339_cov_14.825688:1-339 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 79, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 339 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9671_length_339_cov_14.825688:1-339 [pilon] Processing NODE_1309_length_1337_cov_4.679276:1-1337 [pilon] NODE_10489_length_305_cov_26.130435:1-305 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 89, Coverage: 6, minDepth: 5 [pilon] Confirmed 157 of 305 bases (51.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10489_length_305_cov_26.130435:1-305 [pilon] Processing NODE_6193_length_525_cov_0.675743:1-525 [pilon] NODE_6716_length_489_cov_18.652174:1-489 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 154, Coverage: 32, minDepth: 8 [pilon] Confirmed 421 of 489 bases (86.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6716_length_489_cov_18.652174:1-489 [pilon] Processing NODE_11680_length_258_cov_6.233577:1-258 [pilon] NODE_3608_length_767_cov_16.620743:1-767 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 287, Coverage: 21, minDepth: 5 [pilon] Confirmed 546 of 767 bases (71.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3608_length_767_cov_16.620743:1-767 [pilon] Processing NODE_7330_length_452_cov_0.891239:1-452 [pilon] NODE_8687_length_383_cov_28.038168:1-383 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 164, Coverage: 27, minDepth: 7 [pilon] Confirmed 315 of 383 bases (82.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8687_length_383_cov_28.038168:1-383 [pilon] Processing NODE_16_length_5332_cov_19.982921:1-5332 [pilon] NODE_7522_length_442_cov_2.102804:1-442 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 23, Coverage: 7, minDepth: 5 [pilon] Confirmed 318 of 442 bases (71.95%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7522_length_442_cov_2.102804:1-442 [pilon] Processing NODE_1751_length_1160_cov_3.539942:1-1160 [pilon] NODE_11295_length_273_cov_5.243421:1-273 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 26, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11295_length_273_cov_5.243421:1-273 [pilon] Processing NODE_3200_length_832_cov_59.766526:1-832 [pilon] NODE_1876_length_1121_cov_1.550000:1-1121 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 53, Coverage: 6, minDepth: 5 [pilon] Confirmed 766 of 1121 bases (68.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1876_length_1121_cov_1.550000:1-1121 [pilon] Processing NODE_605_length_1806_cov_2.604748:1-1806 [pilon] NODE_11778_length_254_cov_10.300752:1-254 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 31, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 254 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11778_length_254_cov_10.300752:1-254 [pilon] Processing NODE_13906_length_243_cov_14.852459:1-243 [pilon] NODE_8770_length_378_cov_29.544747:1-378 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 161, Coverage: 19, minDepth: 5 [pilon] Confirmed 263 of 378 bases (69.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8770_length_378_cov_29.544747:1-378 [pilon] Processing NODE_6920_length_476_cov_23.256338:1-476 [pilon] NODE_11341_length_270_cov_16.597315:1-270 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 59, Coverage: 4, minDepth: 5 [pilon] Confirmed 116 of 270 bases (42.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11341_length_270_cov_16.597315:1-270 [pilon] Processing NODE_206_length_2480_cov_21.866469:1-2480 [pilon] NODE_3712_length_753_cov_15.854430:1-753 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 223, Coverage: 26, minDepth: 7 [pilon] Confirmed 683 of 753 bases (90.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3712_length_753_cov_15.854430:1-753 [pilon] Processing NODE_11622_length_258_cov_28.277372:1-258 [pilon] NODE_6300_length_518_cov_3.279597:1-518 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 35, Coverage: 9, minDepth: 5 [pilon] Confirmed 294 of 518 bases (56.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6300_length_518_cov_3.279597:1-518 [pilon] Processing NODE_10916_length_288_cov_13.736527:1-288 [pilon] NODE_8786_length_378_cov_14.408560:1-378 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 84, Coverage: 7, minDepth: 5 [pilon] Confirmed 206 of 378 bases (54.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8786_length_378_cov_14.408560:1-378 [pilon] Processing NODE_280_length_2278_cov_18.790913:1-2278 [pilon] NODE_11415_length_267_cov_14.732877:1-267 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 44, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 267 bases (48.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11415_length_267_cov_14.732877:1-267 [pilon] Processing NODE_13918_length_243_cov_14.778689:1-243 [pilon] NODE_8157_length_411_cov_1.300000:1-411 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 149 of 411 bases (36.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_4463_length_665_cov_2.775735:1-665 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 41, Coverage: 8, minDepth: 5 [pilon] Confirmed 380 of 665 bases (57.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4463_length_665_cov_2.775735:1-665 [pilon] Processing NODE_7484_length_444_cov_3.043344:1-444 [pilon] NODE_6810_length_482_cov_45.202216:1-482 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 379, Coverage: 69, minDepth: 17 [pilon] Confirmed 409 of 482 bases (84.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6810_length_482_cov_45.202216:1-482 [pilon] Processing NODE_5380_length_586_cov_0.838710:1-586 [pilon] Finished processing NODE_8157_length_411_cov_1.300000:1-411 [pilon] Processing NODE_10050_length_323_cov_30.801980:1-323 [pilon] NODE_11859_length_251_cov_16.715385:1-251 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 46, Coverage: 6, minDepth: 5 [pilon] Confirmed 172 of 251 bases (68.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11859_length_251_cov_16.715385:1-251 [pilon] Processing NODE_8016_length_417_cov_28.209459:1-417 [pilon] NODE_12951_length_243_cov_23.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12951_length_243_cov_23.401639:1-243 [pilon] Processing NODE_8991_length_367_cov_11.731707:1-367 [pilon] NODE_9338_length_353_cov_13.353448:1-353 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 70, Coverage: 3, minDepth: 5 [pilon] Confirmed 118 of 353 bases (33.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9338_length_353_cov_13.353448:1-353 [pilon] Processing NODE_3735_length_750_cov_9.930048:1-750 [pilon] NODE_11883_length_249_cov_28.476562:1-249 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 79, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 249 bases (52.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11883_length_249_cov_28.476562:1-249 [pilon] Processing NODE_12716_length_243_cov_26.040984:1-243 [pilon] NODE_1976_length_1092_cov_31.303811:1-1092 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 694, Coverage: 64, minDepth: 16 [pilon] Confirmed 945 of 1092 bases (86.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1976_length_1092_cov_31.303811:1-1092 [pilon] Processing NODE_756_length_1664_cov_2.615036:1-1664 [pilon] NODE_2519_length_963_cov_23.705463:1-963 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 528, Coverage: 36, minDepth: 9 [pilon] Confirmed 689 of 963 bases (71.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2519_length_963_cov_23.705463:1-963 [pilon] Processing NODE_4426_length_669_cov_0.739051:1-669 [pilon] NODE_1309_length_1337_cov_4.679276:1-1337 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 141, Coverage: 14, minDepth: 5 [pilon] Confirmed 1073 of 1337 bases (80.25%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1309_length_1337_cov_4.679276:1-1337 [pilon] Processing NODE_12742_length_243_cov_25.680328:1-243 [pilon] NODE_8805_length_377_cov_12.437500:1-377 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 96, Coverage: 14, minDepth: 5 [pilon] Confirmed 336 of 377 bases (89.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8805_length_377_cov_12.437500:1-377 [pilon] Processing NODE_6718_length_489_cov_12.706522:1-489 [pilon] NODE_1735_length_1168_cov_19.513849:1-1168 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 484, Coverage: 48, minDepth: 12 [pilon] Confirmed 856 of 1168 bases (73.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1735_length_1168_cov_19.513849:1-1168 [pilon] Processing NODE_10418_length_308_cov_13.518717:1-308 [pilon] NODE_2384_length_993_cov_28.670872:1-993 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 665, Coverage: 29, minDepth: 7 [pilon] Confirmed 857 of 993 bases (86.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2384_length_993_cov_28.670872:1-993 [pilon] Processing NODE_12209_length_243_cov_36.459016:1-243 [pilon] NODE_3723_length_751_cov_41.715873:1-751 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 651, Coverage: 57, minDepth: 14 [pilon] Confirmed 515 of 751 bases (68.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3723_length_751_cov_41.715873:1-751 [pilon] Processing NODE_14873_length_243_cov_6.959016:1-243 [pilon] NODE_12201_length_243_cov_36.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 94, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12201_length_243_cov_36.704918:1-243 [pilon] Processing NODE_2449_length_978_cov_3.905484:1-978 [pilon] NODE_7330_length_452_cov_0.891239:1-452 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 452 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7330_length_452_cov_0.891239:1-452 [pilon] Processing NODE_8420_length_398_cov_43.083032:1-398 [pilon] NODE_6193_length_525_cov_0.675743:1-525 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 110 of 525 bases (20.95%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6193_length_525_cov_0.675743:1-525 [pilon] Processing NODE_8886_length_372_cov_29.055777:1-372 [pilon] NODE_11680_length_258_cov_6.233577:1-258 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11680_length_258_cov_6.233577:1-258 [pilon] Processing NODE_3067_length_860_cov_1.125846:1-860 [pilon] NODE_10916_length_288_cov_13.736527:1-288 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 51, Coverage: 5, minDepth: 5 [pilon] Confirmed 148 of 288 bases (51.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10916_length_288_cov_13.736527:1-288 [pilon] Processing NODE_6692_length_491_cov_8.408108:1-491 [pilon] NODE_1751_length_1160_cov_3.539942:1-1160 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 98, Coverage: 11, minDepth: 5 [pilon] Confirmed 849 of 1160 bases (73.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1751_length_1160_cov_3.539942:1-1160 [pilon] Processing NODE_6103_length_531_cov_53.621951:1-531 [pilon] NODE_605_length_1806_cov_2.604748:1-1806 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 125, Coverage: 9, minDepth: 5 [pilon] Confirmed 1478 of 1806 bases (81.84%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_605_length_1806_cov_2.604748:1-1806 [pilon] Processing NODE_5749_length_560_cov_0.865604:1-560 [pilon] NODE_6920_length_476_cov_23.256338:1-476 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 195, Coverage: 29, minDepth: 7 [pilon] Confirmed 414 of 476 bases (86.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6920_length_476_cov_23.256338:1-476 [pilon] Processing NODE_10156_length_318_cov_45.126904:1-318 [pilon] NODE_3200_length_832_cov_59.766526:1-832 log: [pilon] frags shovill.bam: coverage 127 [pilon] Total Reads: 993, Coverage: 127, minDepth: 32 [pilon] Confirmed 696 of 832 bases (83.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3200_length_832_cov_59.766526:1-832 [pilon] Processing NODE_12625_length_243_cov_27.245902:1-243 [pilon] NODE_13906_length_243_cov_14.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13906_length_243_cov_14.852459:1-243 [pilon] Processing NODE_11127_length_279_cov_9.481013:1-279 [pilon] NODE_11622_length_258_cov_28.277372:1-258 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 96, Coverage: 12, minDepth: 5 [pilon] Confirmed 196 of 258 bases (75.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11622_length_258_cov_28.277372:1-258 [pilon] Processing NODE_4363_length_675_cov_1.099278:1-675 [pilon] NODE_12742_length_243_cov_25.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12742_length_243_cov_25.680328:1-243 [pilon] Processing NODE_4796_length_635_cov_1.848249:1-635 [pilon] NODE_6718_length_489_cov_12.706522:1-489 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 102, Coverage: 14, minDepth: 5 [pilon] Confirmed 297 of 489 bases (60.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6718_length_489_cov_12.706522:1-489 [pilon] Processing NODE_2589_length_947_cov_16.992736:1-947 [pilon] NODE_10050_length_323_cov_30.801980:1-323 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 97, Coverage: 6, minDepth: 5 [pilon] Confirmed 185 of 323 bases (57.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10050_length_323_cov_30.801980:1-323 [pilon] Processing NODE_12284_length_243_cov_33.606557:1-243 [pilon] NODE_206_length_2480_cov_21.866469:1-2480 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 1203, Coverage: 34, minDepth: 9 [pilon] Confirmed 2179 of 2480 bases (87.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_206_length_2480_cov_21.866469:1-2480 [pilon] Processing NODE_861_length_1588_cov_2.184731:1-1588 [pilon] NODE_16_length_5332_cov_19.982921:1-5332 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 2380, Coverage: 58, minDepth: 15 [pilon] Confirmed 5017 of 5332 bases (94.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_16_length_5332_cov_19.982921:1-5332 [pilon] Processing NODE_5001_length_618_cov_20.154930:1-618 [pilon] NODE_13918_length_243_cov_14.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13918_length_243_cov_14.778689:1-243 [pilon] Processing NODE_8562_length_390_cov_18.669145:1-390 [pilon] NODE_5380_length_586_cov_0.838710:1-586 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 586 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5380_length_586_cov_0.838710:1-586 [pilon] NODE_7484_length_444_cov_3.043344:1-444 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 30, Coverage: 8, minDepth: 5 [pilon] Confirmed 312 of 444 bases (70.27%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7484_length_444_cov_3.043344:1-444 [pilon] Processing NODE_11140_length_278_cov_51.585987:1-278 [pilon] Processing NODE_12722_length_243_cov_25.959016:1-243 [pilon] NODE_12716_length_243_cov_26.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12716_length_243_cov_26.040984:1-243 [pilon] Processing NODE_3610_length_767_cov_9.876161:1-767 [pilon] NODE_8991_length_367_cov_11.731707:1-367 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 83, Coverage: 5, minDepth: 5 [pilon] Confirmed 233 of 367 bases (63.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8991_length_367_cov_11.731707:1-367 [pilon] Processing NODE_15146_length_194_cov_26.301370:1-194 [pilon] NODE_280_length_2278_cov_18.790913:1-2278 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 958, Coverage: 46, minDepth: 12 [pilon] Confirmed 1995 of 2278 bases (87.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_280_length_2278_cov_18.790913:1-2278 [pilon] Processing NODE_11111_length_279_cov_18.601266:1-279 [pilon] NODE_3735_length_750_cov_9.930048:1-750 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 176, Coverage: 20, minDepth: 5 [pilon] Confirmed 538 of 750 bases (71.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3735_length_750_cov_9.930048:1-750 [pilon] Processing NODE_2794_length_910_cov_1.690748:1-910 [pilon] NODE_4426_length_669_cov_0.739051:1-669 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 183 of 669 bases (27.35%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4426_length_669_cov_0.739051:1-669 [pilon] Processing NODE_65_length_3359_cov_2.941939:1-3359 [pilon] NODE_756_length_1664_cov_2.615036:1-1664 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 111, Coverage: 9, minDepth: 5 [pilon] Confirmed 1130 of 1664 bases (67.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_756_length_1664_cov_2.615036:1-1664 [pilon] Processing NODE_328_length_2170_cov_21.729136:1-2170 [pilon] NODE_8016_length_417_cov_28.209459:1-417 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 182, Coverage: 35, minDepth: 9 [pilon] Confirmed 344 of 417 bases (82.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8016_length_417_cov_28.209459:1-417 [pilon] Processing NODE_9757_length_336_cov_14.204651:1-336 [pilon] NODE_10418_length_308_cov_13.518717:1-308 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 61, Coverage: 3, minDepth: 5 [pilon] Confirmed 119 of 308 bases (38.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10418_length_308_cov_13.518717:1-308 [pilon] Processing NODE_2862_length_900_cov_12.403081:1-900 [pilon] NODE_6692_length_491_cov_8.408108:1-491 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 66, Coverage: 17, minDepth: 5 [pilon] Confirmed 420 of 491 bases (85.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6692_length_491_cov_8.408108:1-491 [pilon] Processing NODE_10267_length_315_cov_7.324742:1-315 [pilon] NODE_12209_length_243_cov_36.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12209_length_243_cov_36.459016:1-243 [pilon] Processing NODE_10807_length_292_cov_45.906433:1-292 [pilon] NODE_14873_length_243_cov_6.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14873_length_243_cov_6.959016:1-243 [pilon] Processing NODE_6846_length_481_cov_1.258333:1-481 [pilon] NODE_8420_length_398_cov_43.083032:1-398 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 257, Coverage: 57, minDepth: 14 [pilon] Confirmed 355 of 398 bases (89.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8420_length_398_cov_43.083032:1-398 [pilon] Processing NODE_3581_length_772_cov_16.425499:1-772 [pilon] NODE_8886_length_372_cov_29.055777:1-372 log: [pilon] NODE_2449_length_978_cov_3.905484:1-978 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 85, Coverage: 11, minDepth: 5 [pilon] Confirmed 778 of 978 bases (79.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 156, Coverage: 5, minDepth: 5 [pilon] Confirmed 144 of 372 bases (38.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8886_length_372_cov_29.055777:1-372 [pilon] Finished processing NODE_2449_length_978_cov_3.905484:1-978 [pilon] Processing NODE_9374_length_351_cov_18.691304:1-351 [pilon] Processing NODE_3377_length_800_cov_77.625920:1-800 [pilon] NODE_4796_length_635_cov_1.848249:1-635 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 351 of 635 bases (55.28%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4796_length_635_cov_1.848249:1-635 [pilon] Processing NODE_2010_length_1084_cov_21.807892:1-1084 [pilon] NODE_3067_length_860_cov_1.125846:1-860 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 25, Coverage: 4, minDepth: 5 [pilon] Confirmed 215 of 860 bases (25.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3067_length_860_cov_1.125846:1-860 [pilon] Processing NODE_7779_length_429_cov_0.974026:1-429 [pilon] NODE_2589_length_947_cov_16.992736:1-947 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 396, Coverage: 44, minDepth: 11 [pilon] Confirmed 805 of 947 bases (85.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2589_length_947_cov_16.992736:1-947 [pilon] Processing NODE_3530_length_779_cov_31.609422:1-779 [pilon] NODE_5749_length_560_cov_0.865604:1-560 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 148 of 560 bases (26.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5749_length_560_cov_0.865604:1-560 [pilon] Processing NODE_13305_length_243_cov_20.204918:1-243 [pilon] NODE_12625_length_243_cov_27.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12625_length_243_cov_27.245902:1-243 [pilon] Processing NODE_15259_length_125_cov_15.250000:1-125 [pilon] NODE_11127_length_279_cov_9.481013:1-279 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 38, Coverage: 2, minDepth: 5 [pilon] Confirmed 77 of 279 bases (27.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11127_length_279_cov_9.481013:1-279 [pilon] Processing NODE_10732_length_297_cov_7.431818:1-297 [pilon] NODE_4363_length_675_cov_1.099278:1-675 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 25, Coverage: 4, minDepth: 5 [pilon] Confirmed 261 of 675 bases (38.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4363_length_675_cov_1.099278:1-675 [pilon] Processing NODE_4461_length_665_cov_7.330882:1-665 [pilon] NODE_6103_length_531_cov_53.621951:1-531 log: [pilon] frags shovill.bam: coverage 88 [pilon] Total Reads: 519, Coverage: 88, minDepth: 22 [pilon] Confirmed 472 of 531 bases (88.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6103_length_531_cov_53.621951:1-531 [pilon] Processing NODE_11692_length_256_cov_43.355556:1-256 [pilon] NODE_10156_length_318_cov_45.126904:1-318 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 196, Coverage: 24, minDepth: 6 [pilon] Confirmed 251 of 318 bases (78.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10156_length_318_cov_45.126904:1-318 [pilon] Processing NODE_197_length_2516_cov_32.091858:1-2516 [pilon] NODE_12722_length_243_cov_25.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12722_length_243_cov_25.959016:1-243 [pilon] Processing NODE_918_length_1545_cov_3.862360:1-1545 [pilon] NODE_12284_length_243_cov_33.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12284_length_243_cov_33.606557:1-243 [pilon] Processing NODE_3707_length_753_cov_20.393987:1-753 [pilon] NODE_861_length_1588_cov_2.184731:1-1588 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 94, Coverage: 8, minDepth: 5 [pilon] Confirmed 1089 of 1588 bases (68.58%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_861_length_1588_cov_2.184731:1-1588 [pilon] Processing NODE_13919_length_243_cov_14.762295:1-243 [pilon] NODE_11140_length_278_cov_51.585987:1-278 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 159, Coverage: 22, minDepth: 6 [pilon] Confirmed 253 of 278 bases (91.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11140_length_278_cov_51.585987:1-278 [pilon] Processing NODE_11845_length_252_cov_9.404580:1-252 [pilon] NODE_5001_length_618_cov_20.154930:1-618 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 236, Coverage: 41, minDepth: 10 [pilon] Confirmed 478 of 618 bases (77.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5001_length_618_cov_20.154930:1-618 [pilon] Processing NODE_4205_length_693_cov_27.895105:1-693 [pilon] NODE_10267_length_315_cov_7.324742:1-315 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 32, Coverage: 2, minDepth: 5 [pilon] Confirmed 46 of 315 bases (14.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10267_length_315_cov_7.324742:1-315 [pilon] Processing NODE_5233_length_598_cov_2.584906:1-598 [pilon] NODE_8562_length_390_cov_18.669145:1-390 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 106, Coverage: 16, minDepth: 5 [pilon] Confirmed 247 of 390 bases (63.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8562_length_390_cov_18.669145:1-390 [pilon] Processing NODE_4126_length_702_cov_4.760757:1-702 [pilon] NODE_11111_length_279_cov_18.601266:1-279 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 70, Coverage: 5, minDepth: 5 [pilon] Confirmed 139 of 279 bases (49.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11111_length_279_cov_18.601266:1-279 [pilon] Processing NODE_5686_length_564_cov_12.474041:1-564 [pilon] NODE_2794_length_910_cov_1.690748:1-910 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 42, Coverage: 6, minDepth: 5 [pilon] Confirmed 397 of 910 bases (43.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2794_length_910_cov_1.690748:1-910 [pilon] Processing NODE_13197_length_243_cov_21.114754:1-243 [pilon] NODE_15146_length_194_cov_26.301370:1-194 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 194 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15146_length_194_cov_26.301370:1-194 [pilon] Processing NODE_9519_length_345_cov_17.316964:1-345 [pilon] NODE_3610_length_767_cov_9.876161:1-767 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 148, Coverage: 18, minDepth: 5 [pilon] Confirmed 490 of 767 bases (63.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3610_length_767_cov_9.876161:1-767 [pilon] Processing NODE_9176_length_358_cov_19.945148:1-358 [pilon] NODE_65_length_3359_cov_2.941939:1-3359 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 256, Coverage: 10, minDepth: 5 [pilon] Confirmed 2734 of 3359 bases (81.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_65_length_3359_cov_2.941939:1-3359 [pilon] Processing NODE_15206_length_156_cov_148.685714:1-156 [pilon] NODE_9757_length_336_cov_14.204651:1-336 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 62, Coverage: 6, minDepth: 5 [pilon] Confirmed 201 of 336 bases (59.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9757_length_336_cov_14.204651:1-336 [pilon] Processing NODE_8289_length_405_cov_11.654930:1-405 [pilon] NODE_328_length_2170_cov_21.729136:1-2170 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1098, Coverage: 54, minDepth: 14 [pilon] Confirmed 1533 of 2170 bases (70.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_328_length_2170_cov_21.729136:1-2170 [pilon] Processing NODE_9676_length_339_cov_13.362385:1-339 [pilon] NODE_3530_length_779_cov_31.609422:1-779 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 601, Coverage: 78, minDepth: 20 [pilon] Confirmed 653 of 779 bases (83.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3530_length_779_cov_31.609422:1-779 [pilon] Processing NODE_14916_length_243_cov_6.532787:1-243 [pilon] NODE_6846_length_481_cov_1.258333:1-481 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 200 of 481 bases (41.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6846_length_481_cov_1.258333:1-481 [pilon] Processing NODE_552_length_1857_cov_9.271313:1-1857 [pilon] NODE_2862_length_900_cov_12.403081:1-900 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 273, Coverage: 21, minDepth: 5 [pilon] Confirmed 674 of 900 bases (74.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2862_length_900_cov_12.403081:1-900 [pilon] Processing NODE_14343_length_243_cov_11.516393:1-243 [pilon] NODE_2010_length_1084_cov_21.807892:1-1084 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 528, Coverage: 53, minDepth: 13 [pilon] Confirmed 861 of 1084 bases (79.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2010_length_1084_cov_21.807892:1-1084 [pilon] Processing NODE_3055_length_862_cov_2.102564:1-862 [pilon] NODE_3581_length_772_cov_16.425499:1-772 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 248, Coverage: 42, minDepth: 11 [pilon] Confirmed 596 of 772 bases (77.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3581_length_772_cov_16.425499:1-772 [pilon] Processing NODE_9178_length_358_cov_14.725738:1-358 [pilon] NODE_9374_length_351_cov_18.691304:1-351 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 86, Coverage: 7, minDepth: 5 [pilon] Confirmed 147 of 351 bases (41.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9374_length_351_cov_18.691304:1-351 [pilon] Processing NODE_10298_length_313_cov_21.182292:1-313 [pilon] NODE_10807_length_292_cov_45.906433:1-292 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 178, Coverage: 22, minDepth: 6 [pilon] Confirmed 259 of 292 bases (88.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10807_length_292_cov_45.906433:1-292 [pilon] Processing NODE_5695_length_564_cov_1.205418:1-564 [pilon] NODE_7779_length_429_cov_0.974026:1-429 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 429 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7779_length_429_cov_0.974026:1-429 [pilon] Processing NODE_2956_length_881_cov_12.632895:1-881 [pilon] NODE_3377_length_800_cov_77.625920:1-800 log: [pilon] frags shovill.bam: coverage 163 [pilon] Total Reads: 1181, Coverage: 163, minDepth: 41 [pilon] Confirmed 711 of 800 bases (88.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3377_length_800_cov_77.625920:1-800 [pilon] Processing NODE_14391_length_243_cov_11.131148:1-243 [pilon] NODE_15259_length_125_cov_15.250000:1-125 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 125 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15259_length_125_cov_15.250000:1-125 [pilon] Processing NODE_5836_length_552_cov_27.018561:1-552 [pilon] NODE_13305_length_243_cov_20.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13305_length_243_cov_20.204918:1-243 [pilon] Processing NODE_4717_length_642_cov_3.097889:1-642 [pilon] NODE_11692_length_256_cov_43.355556:1-256 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 117, Coverage: 14, minDepth: 5 [pilon] Confirmed 212 of 256 bases (82.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11692_length_256_cov_43.355556:1-256 [pilon] NODE_4461_length_665_cov_7.330882:1-665 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 119, Coverage: 8, minDepth: 5 [pilon] Confirmed 450 of 665 bases (67.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_14941_length_243_cov_6.254098:1-243 [pilon] Finished processing NODE_4461_length_665_cov_7.330882:1-665 [pilon] Processing NODE_9657_length_339_cov_20.830275:1-339 [pilon] NODE_10732_length_297_cov_7.431818:1-297 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 30, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10732_length_297_cov_7.431818:1-297 [pilon] Processing NODE_12232_length_243_cov_35.360656:1-243 [pilon] NODE_5233_length_598_cov_2.584906:1-598 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 37, Coverage: 8, minDepth: 5 [pilon] Confirmed 398 of 598 bases (66.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5233_length_598_cov_2.584906:1-598 [pilon] Processing NODE_13822_length_243_cov_15.459016:1-243 [pilon] NODE_197_length_2516_cov_32.091858:1-2516 log: [pilon] frags shovill.bam: coverage 83 [pilon] Total Reads: 1742, Coverage: 83, minDepth: 21 [pilon] Confirmed 2196 of 2516 bases (87.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_197_length_2516_cov_32.091858:1-2516 [pilon] Processing NODE_13765_length_243_cov_15.926230:1-243 [pilon] NODE_3707_length_753_cov_20.393987:1-753 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 323, Coverage: 33, minDepth: 8 [pilon] Confirmed 600 of 753 bases (79.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3707_length_753_cov_20.393987:1-753 [pilon] Processing NODE_1584_length_1225_cov_18.363225:1-1225 [pilon] NODE_13919_length_243_cov_14.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13919_length_243_cov_14.762295:1-243 [pilon] Processing NODE_10697_length_297_cov_32.369318:1-297 [pilon] NODE_918_length_1545_cov_3.862360:1-1545 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 139, Coverage: 12, minDepth: 5 [pilon] Confirmed 1253 of 1545 bases (81.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_918_length_1545_cov_3.862360:1-1545 [pilon] Processing NODE_6479_length_505_cov_3.585938:1-505 [pilon] NODE_11845_length_252_cov_9.404580:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11845_length_252_cov_9.404580:1-252 [pilon] Processing NODE_11107_length_279_cov_21.151899:1-279 [pilon] NODE_13197_length_243_cov_21.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13197_length_243_cov_21.114754:1-243 [pilon] Processing NODE_8735_length_381_cov_8.407692:1-381 [pilon] NODE_4126_length_702_cov_4.760757:1-702 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 71, Coverage: 13, minDepth: 5 [pilon] Confirmed 528 of 702 bases (75.21%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4126_length_702_cov_4.760757:1-702 [pilon] Processing NODE_5232_length_598_cov_3.029350:1-598 [pilon] NODE_4205_length_693_cov_27.895105:1-693 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 395, Coverage: 28, minDepth: 7 [pilon] Confirmed 511 of 693 bases (73.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4205_length_693_cov_27.895105:1-693 [pilon] Processing NODE_1595_length_1219_cov_2.538251:1-1219 [pilon] NODE_5686_length_564_cov_12.474041:1-564 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 138, Coverage: 18, minDepth: 5 [pilon] Confirmed 438 of 564 bases (77.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5686_length_564_cov_12.474041:1-564 [pilon] Processing NODE_14013_length_243_cov_14.106557:1-243 [pilon] NODE_15206_length_156_cov_148.685714:1-156 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 109, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 156 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15206_length_156_cov_148.685714:1-156 [pilon] Processing NODE_14041_length_243_cov_13.909836:1-243 [pilon] NODE_8289_length_405_cov_11.654930:1-405 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 85, Coverage: 2, minDepth: 5 [pilon] Confirmed 119 of 405 bases (29.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8289_length_405_cov_11.654930:1-405 [pilon] Processing NODE_14983_length_243_cov_5.655738:1-243 [pilon] NODE_9176_length_358_cov_19.945148:1-358 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 103, Coverage: 8, minDepth: 5 [pilon] Confirmed 198 of 358 bases (55.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9176_length_358_cov_19.945148:1-358 [pilon] Processing NODE_8731_length_381_cov_11.342308:1-381 [pilon] NODE_9519_length_345_cov_17.316964:1-345 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 87, Coverage: 13, minDepth: 5 [pilon] Confirmed 278 of 345 bases (80.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9519_length_345_cov_17.316964:1-345 [pilon] Processing NODE_14062_length_243_cov_13.762295:1-243 [pilon] NODE_14916_length_243_cov_6.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14916_length_243_cov_6.532787:1-243 [pilon] Processing NODE_4964_length_621_cov_20.048000:1-621 [pilon] NODE_9676_length_339_cov_13.362385:1-339 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 66, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 339 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9676_length_339_cov_13.362385:1-339 [pilon] Processing NODE_10086_length_321_cov_26.660000:1-321 [pilon] NODE_552_length_1857_cov_9.271313:1-1857 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 419, Coverage: 20, minDepth: 5 [pilon] Confirmed 1384 of 1857 bases (74.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_552_length_1857_cov_9.271313:1-1857 [pilon] Processing NODE_1784_length_1152_cov_16.392823:1-1152 [pilon] NODE_14343_length_243_cov_11.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14343_length_243_cov_11.516393:1-243 [pilon] Processing NODE_7388_length_449_cov_1.838415:1-449 [pilon] NODE_3055_length_862_cov_2.102564:1-862 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 43, Coverage: 6, minDepth: 5 [pilon] Confirmed 391 of 862 bases (45.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3055_length_862_cov_2.102564:1-862 [pilon] Processing NODE_7701_length_432_cov_20.282958:1-432 [pilon] NODE_10298_length_313_cov_21.182292:1-313 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 69, Coverage: 7, minDepth: 5 [pilon] Confirmed 163 of 313 bases (52.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10298_length_313_cov_21.182292:1-313 [pilon] Processing NODE_3421_length_795_cov_26.956973:1-795 [pilon] NODE_9178_length_358_cov_14.725738:1-358 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 84, Coverage: 7, minDepth: 5 [pilon] Confirmed 196 of 358 bases (54.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9178_length_358_cov_14.725738:1-358 [pilon] Processing NODE_3814_length_739_cov_14.012945:1-739 [pilon] NODE_2956_length_881_cov_12.632895:1-881 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 240, Coverage: 35, minDepth: 9 [pilon] Confirmed 671 of 881 bases (76.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2956_length_881_cov_12.632895:1-881 [pilon] Processing NODE_12174_length_243_cov_37.729508:1-243 [pilon] NODE_5695_length_564_cov_1.205418:1-564 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 197 of 564 bases (34.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5695_length_564_cov_1.205418:1-564 [pilon] Processing NODE_11293_length_273_cov_6.111842:1-273 [pilon] NODE_13765_length_243_cov_15.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13765_length_243_cov_15.926230:1-243 [pilon] Processing NODE_12794_length_243_cov_25.057377:1-243 [pilon] NODE_14391_length_243_cov_11.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14391_length_243_cov_11.131148:1-243 [pilon] Processing NODE_8565_length_390_cov_13.851301:1-390 [pilon] NODE_13822_length_243_cov_15.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13822_length_243_cov_15.459016:1-243 [pilon] Processing NODE_5611_length_570_cov_0.690423:1-570 [pilon] NODE_4717_length_642_cov_3.097889:1-642 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 43, Coverage: 8, minDepth: 5 [pilon] Confirmed 468 of 642 bases (72.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4717_length_642_cov_3.097889:1-642 [pilon] Processing NODE_8149_length_411_cov_10.841379:1-411 [pilon] NODE_14041_length_243_cov_13.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14041_length_243_cov_13.909836:1-243 [pilon] Processing NODE_5043_length_615_cov_22.912955:1-615 [pilon] NODE_14983_length_243_cov_5.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14983_length_243_cov_5.655738:1-243 [pilon] Processing NODE_5399_length_584_cov_18.114471:1-584 [pilon] NODE_5836_length_552_cov_27.018561:1-552 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 270, Coverage: 39, minDepth: 10 [pilon] Confirmed 459 of 552 bases (83.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5836_length_552_cov_27.018561:1-552 [pilon] Processing NODE_383_length_2066_cov_18.536761:1-2066 [pilon] NODE_14941_length_243_cov_6.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14941_length_243_cov_6.254098:1-243 [pilon] Processing NODE_5873_length_549_cov_62.014019:1-549 [pilon] NODE_9657_length_339_cov_20.830275:1-339 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 91, Coverage: 14, minDepth: 5 [pilon] Confirmed 264 of 339 bases (77.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9657_length_339_cov_20.830275:1-339 [pilon] Processing NODE_13147_length_243_cov_21.532787:1-243 [pilon] NODE_12232_length_243_cov_35.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 79, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12232_length_243_cov_35.360656:1-243 [pilon] Processing NODE_5963_length_544_cov_1.144208:1-544 [pilon] NODE_6479_length_505_cov_3.585938:1-505 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 30, Coverage: 8, minDepth: 5 [pilon] Confirmed 328 of 505 bases (64.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6479_length_505_cov_3.585938:1-505 [pilon] NODE_5232_length_598_cov_3.029350:1-598 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 39, Coverage: 8, minDepth: 5 [pilon] Confirmed 427 of 598 bases (71.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_5950_length_544_cov_32.716312:1-544 [pilon] Finished processing NODE_5232_length_598_cov_3.029350:1-598 [pilon] Processing NODE_3862_length_732_cov_34.541735:1-732 [pilon] NODE_10697_length_297_cov_32.369318:1-297 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 116, Coverage: 20, minDepth: 5 [pilon] Confirmed 265 of 297 bases (89.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10697_length_297_cov_32.369318:1-297 [pilon] Processing NODE_4896_length_627_cov_1.415020:1-627 [pilon] NODE_8735_length_381_cov_8.407692:1-381 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 53, Coverage: 2, minDepth: 5 [pilon] Confirmed 30 of 381 bases (7.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8735_length_381_cov_8.407692:1-381 [pilon] Processing NODE_1196_length_1400_cov_1.178264:1-1400 [pilon] NODE_1584_length_1225_cov_18.363225:1-1225 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 469, Coverage: 42, minDepth: 11 [pilon] Confirmed 986 of 1225 bases (80.49%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1584_length_1225_cov_18.363225:1-1225 [pilon] Processing NODE_13984_length_243_cov_14.270492:1-243 [pilon] NODE_11107_length_279_cov_21.151899:1-279 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 68, Coverage: 6, minDepth: 5 [pilon] Confirmed 160 of 279 bases (57.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11107_length_279_cov_21.151899:1-279 [pilon] Processing NODE_5640_length_568_cov_1.026846:1-568 [pilon] NODE_14013_length_243_cov_14.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14013_length_243_cov_14.106557:1-243 [pilon] Processing NODE_8251_length_406_cov_19.508772:1-406 [pilon] NODE_1595_length_1219_cov_2.538251:1-1219 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 703 of 1219 bases (57.67%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1595_length_1219_cov_2.538251:1-1219 [pilon] Processing NODE_12851_length_243_cov_24.524590:1-243 [pilon] NODE_8731_length_381_cov_11.342308:1-381 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 65, Coverage: 13, minDepth: 5 [pilon] Confirmed 314 of 381 bases (82.41%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8731_length_381_cov_11.342308:1-381 [pilon] Processing NODE_10716_length_297_cov_15.318182:1-297 [pilon] NODE_14062_length_243_cov_13.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14062_length_243_cov_13.762295:1-243 [pilon] Processing NODE_15200_length_159_cov_7.236842:1-159 [pilon] NODE_4964_length_621_cov_20.048000:1-621 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 245, Coverage: 12, minDepth: 5 [pilon] Confirmed 450 of 621 bases (72.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4964_length_621_cov_20.048000:1-621 [pilon] Processing NODE_11215_length_276_cov_5.503226:1-276 [pilon] NODE_12794_length_243_cov_25.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12794_length_243_cov_25.057377:1-243 [pilon] Processing NODE_14363_length_243_cov_11.327869:1-243 [pilon] NODE_10086_length_321_cov_26.660000:1-321 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 128, Coverage: 13, minDepth: 5 [pilon] Confirmed 248 of 321 bases (77.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10086_length_321_cov_26.660000:1-321 [pilon] Processing NODE_5108_length_609_cov_21.823770:1-609 [pilon] NODE_5399_length_584_cov_18.114471:1-584 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 176, Coverage: 28, minDepth: 7 [pilon] Confirmed 470 of 584 bases (80.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5399_length_584_cov_18.114471:1-584 [pilon] Processing NODE_806_length_1624_cov_4.955422:1-1624 [pilon] NODE_1784_length_1152_cov_16.392823:1-1152 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 446, Coverage: 29, minDepth: 7 [pilon] Confirmed 919 of 1152 bases (79.77%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1784_length_1152_cov_16.392823:1-1152 [pilon] Processing NODE_10720_length_297_cov_13.562500:1-297 [pilon] NODE_7388_length_449_cov_1.838415:1-449 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 277 of 449 bases (61.69%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7388_length_449_cov_1.838415:1-449 [pilon] Processing NODE_692_length_1709_cov_2.154282:1-1709 [pilon] NODE_7701_length_432_cov_20.282958:1-432 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 156, Coverage: 24, minDepth: 6 [pilon] Confirmed 377 of 432 bases (87.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7701_length_432_cov_20.282958:1-432 [pilon] Processing NODE_15176_length_172_cov_8.294118:1-172 [pilon] NODE_11293_length_273_cov_6.111842:1-273 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11293_length_273_cov_6.111842:1-273 [pilon] Processing NODE_9748_length_336_cov_17.172093:1-336 [pilon] NODE_12174_length_243_cov_37.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12174_length_243_cov_37.729508:1-243 [pilon] Processing NODE_8874_length_373_cov_16.003968:1-373 [pilon] NODE_3814_length_739_cov_14.012945:1-739 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 193, Coverage: 25, minDepth: 6 [pilon] Confirmed 499 of 739 bases (67.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3814_length_739_cov_14.012945:1-739 [pilon] Processing NODE_4459_length_665_cov_15.707721:1-665 [pilon] NODE_8565_length_390_cov_13.851301:1-390 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 93, Coverage: 16, minDepth: 5 [pilon] Confirmed 309 of 390 bases (79.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8565_length_390_cov_13.851301:1-390 [pilon] Processing NODE_11478_length_264_cov_16.895105:1-264 [pilon] NODE_3421_length_795_cov_26.956973:1-795 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 420, Coverage: 55, minDepth: 14 [pilon] Confirmed 651 of 795 bases (81.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3421_length_795_cov_26.956973:1-795 [pilon] Processing NODE_11393_length_267_cov_22.952055:1-267 [pilon] NODE_5611_length_570_cov_0.690423:1-570 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 570 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5611_length_570_cov_0.690423:1-570 [pilon] Processing NODE_6504_length_503_cov_30.060209:1-503 [pilon] NODE_5043_length_615_cov_22.912955:1-615 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 253, Coverage: 30, minDepth: 8 [pilon] Confirmed 533 of 615 bases (86.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5043_length_615_cov_22.912955:1-615 [pilon] Processing NODE_14726_length_243_cov_8.377049:1-243 [pilon] NODE_8149_length_411_cov_10.841379:1-411 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 66, Coverage: 10, minDepth: 5 [pilon] Confirmed 274 of 411 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8149_length_411_cov_10.841379:1-411 [pilon] Processing NODE_11247_length_273_cov_25.967105:1-273 [pilon] NODE_383_length_2066_cov_18.536761:1-2066 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 994, Coverage: 40, minDepth: 10 [pilon] Confirmed 1670 of 2066 bases (80.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_383_length_2066_cov_18.536761:1-2066 [pilon] Processing NODE_12215_length_243_cov_36.155738:1-243 [pilon] NODE_5873_length_549_cov_62.014019:1-549 log: [pilon] frags shovill.bam: coverage 97 [pilon] Total Reads: 585, Coverage: 97, minDepth: 24 [pilon] Confirmed 467 of 549 bases (85.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5873_length_549_cov_62.014019:1-549 [pilon] Processing NODE_12586_length_243_cov_27.680328:1-243 [pilon] NODE_13984_length_243_cov_14.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13984_length_243_cov_14.270492:1-243 [pilon] Processing NODE_10996_length_285_cov_6.475610:1-285 [pilon] NODE_13147_length_243_cov_21.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13147_length_243_cov_21.532787:1-243 [pilon] Processing NODE_5510_length_576_cov_18.562637:1-576 [pilon] NODE_5963_length_544_cov_1.144208:1-544 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 121 of 544 bases (22.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5963_length_544_cov_1.144208:1-544 [pilon] Processing NODE_6585_length_498_cov_2.525199:1-498 [pilon] NODE_5950_length_544_cov_32.716312:1-544 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 325, Coverage: 54, minDepth: 14 [pilon] Confirmed 463 of 544 bases (85.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5950_length_544_cov_32.716312:1-544 [pilon] Processing NODE_3689_length_756_cov_10.759055:1-756 [pilon] NODE_4896_length_627_cov_1.415020:1-627 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 320 of 627 bases (51.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4896_length_627_cov_1.415020:1-627 [pilon] Processing NODE_282_length_2273_cov_38.801580:1-2273 [pilon] NODE_8251_length_406_cov_19.508772:1-406 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 126, Coverage: 22, minDepth: 6 [pilon] Confirmed 319 of 406 bases (78.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8251_length_406_cov_19.508772:1-406 [pilon] Processing NODE_10865_length_289_cov_28.261905:1-289 [pilon] NODE_15200_length_159_cov_7.236842:1-159 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 159 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15200_length_159_cov_7.236842:1-159 [pilon] Processing NODE_3402_length_798_cov_9.657312:1-798 [pilon] NODE_11215_length_276_cov_5.503226:1-276 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 25, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11215_length_276_cov_5.503226:1-276 [pilon] Processing NODE_953_length_1526_cov_31.797865:1-1526 [pilon] NODE_12851_length_243_cov_24.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12851_length_243_cov_24.524590:1-243 [pilon] Processing NODE_1681_length_1189_cov_17.691011:1-1189 [pilon] NODE_3862_length_732_cov_34.541735:1-732 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 490, Coverage: 74, minDepth: 19 [pilon] Confirmed 599 of 732 bases (81.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3862_length_732_cov_34.541735:1-732 [pilon] Processing NODE_14925_length_243_cov_6.467213:1-243 [pilon] NODE_14363_length_243_cov_11.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14363_length_243_cov_11.327869:1-243 [pilon] Processing NODE_7751_length_429_cov_26.376623:1-429 [pilon] NODE_1196_length_1400_cov_1.178264:1-1400 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 60, Coverage: 5, minDepth: 5 [pilon] Confirmed 663 of 1400 bases (47.36%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1196_length_1400_cov_1.178264:1-1400 [pilon] Processing NODE_7801_length_427_cov_21.163399:1-427 [pilon] NODE_5108_length_609_cov_21.823770:1-609 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 244, Coverage: 37, minDepth: 9 [pilon] Confirmed 492 of 609 bases (80.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5108_length_609_cov_21.823770:1-609 [pilon] Processing NODE_7863_length_424_cov_22.151815:1-424 [pilon] NODE_4459_length_665_cov_15.707721:1-665 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 187, Coverage: 23, minDepth: 6 [pilon] Confirmed 422 of 665 bases (63.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4459_length_665_cov_15.707721:1-665 [pilon] Processing NODE_12204_length_243_cov_36.622951:1-243 [pilon] NODE_5640_length_568_cov_1.026846:1-568 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 75 of 568 bases (13.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5640_length_568_cov_1.026846:1-568 [pilon] Processing NODE_9064_length_363_cov_22.173554:1-363 [pilon] NODE_11478_length_264_cov_16.895105:1-264 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 52, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11478_length_264_cov_16.895105:1-264 [pilon] Processing NODE_8848_length_374_cov_63.106719:1-374 [pilon] NODE_10716_length_297_cov_15.318182:1-297 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 65, Coverage: 2, minDepth: 5 [pilon] Confirmed 71 of 297 bases (23.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10716_length_297_cov_15.318182:1-297 [pilon] Processing NODE_10170_length_318_cov_21.045685:1-318 [pilon] NODE_14726_length_243_cov_8.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14726_length_243_cov_8.377049:1-243 [pilon] Processing NODE_7036_length_469_cov_1.448276:1-469 [pilon] NODE_8874_length_373_cov_16.003968:1-373 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 91, Coverage: 14, minDepth: 5 [pilon] Confirmed 258 of 373 bases (69.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8874_length_373_cov_16.003968:1-373 [pilon] Processing NODE_13587_length_243_cov_17.590164:1-243 [pilon] NODE_15176_length_172_cov_8.294118:1-172 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 17, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 172 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15176_length_172_cov_8.294118:1-172 [pilon] Processing NODE_8663_length_384_cov_17.380228:1-384 [pilon] NODE_11393_length_267_cov_22.952055:1-267 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 80, Coverage: 9, minDepth: 5 [pilon] Confirmed 204 of 267 bases (76.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11393_length_267_cov_22.952055:1-267 [pilon] Processing NODE_10416_length_308_cov_17.085561:1-308 [pilon] NODE_10720_length_297_cov_13.562500:1-297 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 54, Coverage: 2, minDepth: 5 [pilon] Confirmed 66 of 297 bases (22.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10720_length_297_cov_13.562500:1-297 [pilon] Processing NODE_6210_length_523_cov_34.537313:1-523 [pilon] NODE_806_length_1624_cov_4.955422:1-1624 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 207, Coverage: 16, minDepth: 5 [pilon] Confirmed 1462 of 1624 bases (90.02%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_806_length_1624_cov_4.955422:1-1624 [pilon] Processing NODE_5448_length_581_cov_0.508696:1-581 [pilon] NODE_6504_length_503_cov_30.060209:1-503 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 280, Coverage: 36, minDepth: 9 [pilon] Confirmed 380 of 503 bases (75.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6504_length_503_cov_30.060209:1-503 [pilon] Processing NODE_3733_length_750_cov_18.882353:1-750 [pilon] NODE_692_length_1709_cov_2.154282:1-1709 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 109, Coverage: 8, minDepth: 5 [pilon] Confirmed 1379 of 1709 bases (80.69%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_692_length_1709_cov_2.154282:1-1709 [pilon] Processing NODE_6596_length_497_cov_44.071809:1-497 [pilon] NODE_9748_length_336_cov_17.172093:1-336 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 72, Coverage: 4, minDepth: 5 [pilon] Confirmed 132 of 336 bases (39.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9748_length_336_cov_17.172093:1-336 [pilon] Processing NODE_3127_length_847_cov_1.603306:1-847 [pilon] NODE_3402_length_798_cov_9.657312:1-798 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 153, Coverage: 14, minDepth: 5 [pilon] Confirmed 606 of 798 bases (75.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3402_length_798_cov_9.657312:1-798 [pilon] Processing NODE_14260_length_243_cov_12.163934:1-243 [pilon] NODE_12586_length_243_cov_27.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12586_length_243_cov_27.680328:1-243 [pilon] Processing NODE_13748_length_243_cov_16.073770:1-243 [pilon] NODE_3689_length_756_cov_10.759055:1-756 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 174, Coverage: 19, minDepth: 5 [pilon] Confirmed 616 of 756 bases (81.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3689_length_756_cov_10.759055:1-756 [pilon] Processing NODE_6522_length_502_cov_1.577428:1-502 [pilon] NODE_10996_length_285_cov_6.475610:1-285 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 19, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10996_length_285_cov_6.475610:1-285 [pilon] Processing NODE_9393_length_351_cov_7.600000:1-351 [pilon] NODE_11247_length_273_cov_25.967105:1-273 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 94, Coverage: 8, minDepth: 5 [pilon] Confirmed 177 of 273 bases (64.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11247_length_273_cov_25.967105:1-273 [pilon] Processing NODE_13448_length_243_cov_18.852459:1-243 [pilon] NODE_6585_length_498_cov_2.525199:1-498 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 28, Coverage: 7, minDepth: 5 [pilon] Confirmed 305 of 498 bases (61.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6585_length_498_cov_2.525199:1-498 [pilon] Processing NODE_6255_length_521_cov_0.437500:1-521 [pilon] NODE_7801_length_427_cov_21.163399:1-427 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 152, Coverage: 7, minDepth: 5 [pilon] Confirmed 183 of 427 bases (42.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7801_length_427_cov_21.163399:1-427 [pilon] Processing NODE_10274_length_314_cov_71.481865:1-314 [pilon] NODE_5510_length_576_cov_18.562637:1-576 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 195, Coverage: 25, minDepth: 6 [pilon] Confirmed 424 of 576 bases (73.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5510_length_576_cov_18.562637:1-576 [pilon] Processing NODE_12647_length_243_cov_26.893443:1-243 [pilon] NODE_10865_length_289_cov_28.261905:1-289 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 96, Coverage: 14, minDepth: 5 [pilon] Confirmed 262 of 289 bases (90.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10865_length_289_cov_28.261905:1-289 [pilon] Processing NODE_11038_length_282_cov_14.180124:1-282 [pilon] NODE_12215_length_243_cov_36.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 99, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12215_length_243_cov_36.155738:1-243 [pilon] Processing NODE_7656_length_435_cov_9.152866:1-435 [pilon] NODE_13587_length_243_cov_17.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13587_length_243_cov_17.590164:1-243 [pilon] Processing NODE_770_length_1642_cov_15.886917:1-1642 [pilon] NODE_7036_length_469_cov_1.448276:1-469 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 285 of 469 bases (60.77%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7036_length_469_cov_1.448276:1-469 [pilon] Processing NODE_8487_length_395_cov_4.700730:1-395 [pilon] NODE_1681_length_1189_cov_17.691011:1-1189 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 537, Coverage: 50, minDepth: 13 [pilon] Confirmed 764 of 1189 bases (64.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1681_length_1189_cov_17.691011:1-1189 [pilon] Processing NODE_14701_length_243_cov_8.549180:1-243 [pilon] NODE_282_length_2273_cov_38.801580:1-2273 log: [pilon] frags shovill.bam: coverage 110 [pilon] Total Reads: 2084, Coverage: 110, minDepth: 28 [pilon] Confirmed 2022 of 2273 bases (88.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_282_length_2273_cov_38.801580:1-2273 [pilon] Processing NODE_557_length_1850_cov_19.337189:1-1850 [pilon] NODE_14925_length_243_cov_6.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14925_length_243_cov_6.467213:1-243 [pilon] Processing NODE_1424_length_1291_cov_14.237607:1-1291 [pilon] NODE_14260_length_243_cov_12.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14260_length_243_cov_12.163934:1-243 [pilon] Processing NODE_14242_length_243_cov_12.286885:1-243 [pilon] NODE_3733_length_750_cov_18.882353:1-750 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 244, Coverage: 29, minDepth: 7 [pilon] Confirmed 637 of 750 bases (84.93%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3733_length_750_cov_18.882353:1-750 [pilon] Processing NODE_13087_length_243_cov_22.073770:1-243 [pilon] NODE_7863_length_424_cov_22.151815:1-424 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 136, Coverage: 11, minDepth: 5 [pilon] Confirmed 264 of 424 bases (62.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7863_length_424_cov_22.151815:1-424 [pilon] Processing NODE_9673_length_339_cov_13.949541:1-339 [pilon] NODE_7751_length_429_cov_26.376623:1-429 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 182, Coverage: 22, minDepth: 6 [pilon] Confirmed 303 of 429 bases (70.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7751_length_429_cov_26.376623:1-429 [pilon] Processing NODE_6111_length_531_cov_16.887805:1-531 [pilon] NODE_5448_length_581_cov_0.508696:1-581 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 581 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5448_length_581_cov_0.508696:1-581 [pilon] Processing NODE_7725_length_431_cov_24.641935:1-431 [pilon] NODE_3127_length_847_cov_1.603306:1-847 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 33, Coverage: 5, minDepth: 5 [pilon] Confirmed 493 of 847 bases (58.21%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3127_length_847_cov_1.603306:1-847 [pilon] Processing NODE_2467_length_974_cov_16.218054:1-974 [pilon] NODE_10170_length_318_cov_21.045685:1-318 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 96, Coverage: 5, minDepth: 5 [pilon] Confirmed 165 of 318 bases (51.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10170_length_318_cov_21.045685:1-318 [pilon] Processing NODE_2997_length_874_cov_1.423639:1-874 [pilon] NODE_6210_length_523_cov_34.537313:1-523 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 294, Coverage: 31, minDepth: 8 [pilon] Confirmed 482 of 523 bases (92.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6210_length_523_cov_34.537313:1-523 [pilon] Processing NODE_7000_length_471_cov_27.682857:1-471 [pilon] NODE_9064_length_363_cov_22.173554:1-363 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 62, Coverage: 3, minDepth: 5 [pilon] Confirmed 116 of 363 bases (31.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9064_length_363_cov_22.173554:1-363 [pilon] Processing NODE_13636_length_243_cov_17.163934:1-243 [pilon] NODE_6596_length_497_cov_44.071809:1-497 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 347, Coverage: 58, minDepth: 15 [pilon] Confirmed 433 of 497 bases (87.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6596_length_497_cov_44.071809:1-497 [pilon] Processing NODE_4673_length_646_cov_16.678095:1-646 [pilon] NODE_12204_length_243_cov_36.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 95, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12204_length_243_cov_36.622951:1-243 [pilon] Processing NODE_13495_length_243_cov_18.393443:1-243 [pilon] NODE_8848_length_374_cov_63.106719:1-374 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 338, Coverage: 61, minDepth: 15 [pilon] Confirmed 331 of 374 bases (88.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8848_length_374_cov_63.106719:1-374 [pilon] Processing NODE_11563_length_261_cov_26.571429:1-261 [pilon] NODE_13748_length_243_cov_16.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13748_length_243_cov_16.073770:1-243 [pilon] Processing NODE_10577_length_302_cov_18.773481:1-302 [pilon] NODE_953_length_1526_cov_31.797865:1-1526 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 1075, Coverage: 84, minDepth: 21 [pilon] Confirmed 1247 of 1526 bases (81.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_953_length_1526_cov_31.797865:1-1526 [pilon] Processing NODE_1099_length_1441_cov_18.608333:1-1441 [pilon] NODE_10416_length_308_cov_17.085561:1-308 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 204 of 308 bases (66.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10416_length_308_cov_17.085561:1-308 [pilon] Processing NODE_1084_length_1450_cov_3.592175:1-1450 [pilon] NODE_8663_length_384_cov_17.380228:1-384 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 115, Coverage: 14, minDepth: 5 [pilon] Confirmed 300 of 384 bases (78.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8663_length_384_cov_17.380228:1-384 [pilon] Processing NODE_10395_length_309_cov_16.265957:1-309 [pilon] NODE_6522_length_502_cov_1.577428:1-502 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 272 of 502 bases (54.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6522_length_502_cov_1.577428:1-502 [pilon] Processing NODE_12218_length_243_cov_35.909836:1-243 [pilon] NODE_13448_length_243_cov_18.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13448_length_243_cov_18.852459:1-243 [pilon] Processing NODE_11619_length_259_cov_1.224638:1-259 [pilon] NODE_11038_length_282_cov_14.180124:1-282 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 52, Coverage: 4, minDepth: 5 [pilon] Confirmed 97 of 282 bases (34.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11038_length_282_cov_14.180124:1-282 [pilon] Processing NODE_8315_length_404_cov_1.042403:1-404 [pilon] NODE_9393_length_351_cov_7.600000:1-351 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 31, Coverage: 2, minDepth: 5 [pilon] Confirmed 107 of 351 bases (30.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9393_length_351_cov_7.600000:1-351 [pilon] Processing NODE_14591_length_243_cov_9.483607:1-243 [pilon] NODE_6255_length_521_cov_0.437500:1-521 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 39 of 521 bases (7.49%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6255_length_521_cov_0.437500:1-521 [pilon] Processing NODE_14082_length_243_cov_13.614754:1-243 [pilon] NODE_14242_length_243_cov_12.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14242_length_243_cov_12.286885:1-243 [pilon] Processing NODE_9122_length_360_cov_23.083682:1-360 [pilon] NODE_7725_length_431_cov_24.641935:1-431 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 170, Coverage: 28, minDepth: 7 [pilon] Confirmed 335 of 431 bases (77.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7725_length_431_cov_24.641935:1-431 [pilon] Processing NODE_1999_length_1087_cov_5.019669:1-1087 [pilon] NODE_10274_length_314_cov_71.481865:1-314 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 307, Coverage: 51, minDepth: 13 [pilon] Confirmed 276 of 314 bases (87.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10274_length_314_cov_71.481865:1-314 [pilon] NODE_7656_length_435_cov_9.152866:1-435 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 67, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 435 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7656_length_435_cov_9.152866:1-435 [pilon] Processing NODE_11880_length_249_cov_33.289062:1-249 [pilon] Processing NODE_4272_length_684_cov_19.808171:1-684 [pilon] NODE_770_length_1642_cov_15.886917:1-1642 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 670, Coverage: 37, minDepth: 9 [pilon] Confirmed 1295 of 1642 bases (78.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_770_length_1642_cov_15.886917:1-1642 [pilon] Processing NODE_4151_length_699_cov_1.301038:1-699 [pilon] NODE_14701_length_243_cov_8.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14701_length_243_cov_8.549180:1-243 [pilon] Processing NODE_10744_length_296_cov_12.902857:1-296 [pilon] NODE_8487_length_395_cov_4.700730:1-395 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 41, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 395 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8487_length_395_cov_4.700730:1-395 [pilon] Processing NODE_12685_length_243_cov_26.401639:1-243 [pilon] NODE_12647_length_243_cov_26.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12647_length_243_cov_26.893443:1-243 [pilon] Processing NODE_5828_length_553_cov_41.398148:1-553 [pilon] NODE_6111_length_531_cov_16.887805:1-531 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 159, Coverage: 22, minDepth: 6 [pilon] Confirmed 399 of 531 bases (75.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6111_length_531_cov_16.887805:1-531 [pilon] Processing NODE_5073_length_612_cov_41.784114:1-612 [pilon] NODE_9673_length_339_cov_13.949541:1-339 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 67, Coverage: 11, minDepth: 5 [pilon] Confirmed 259 of 339 bases (76.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9673_length_339_cov_13.949541:1-339 [pilon] Processing NODE_1757_length_1158_cov_19.464802:1-1158 [pilon] NODE_1424_length_1291_cov_14.237607:1-1291 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 450, Coverage: 37, minDepth: 9 [pilon] Confirmed 943 of 1291 bases (73.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1424_length_1291_cov_14.237607:1-1291 [pilon] Processing NODE_9953_length_327_cov_25.975728:1-327 [pilon] NODE_13087_length_243_cov_22.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13087_length_243_cov_22.073770:1-243 [pilon] Processing NODE_12677_length_243_cov_26.483607:1-243 [pilon] NODE_2997_length_874_cov_1.423639:1-874 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 316 of 874 bases (36.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2997_length_874_cov_1.423639:1-874 [pilon] Processing NODE_7763_length_429_cov_15.753247:1-429 [pilon] NODE_13495_length_243_cov_18.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13495_length_243_cov_18.393443:1-243 [pilon] Processing NODE_13785_length_243_cov_15.795082:1-243 [pilon] NODE_4673_length_646_cov_16.678095:1-646 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 202, Coverage: 24, minDepth: 6 [pilon] Confirmed 576 of 646 bases (89.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4673_length_646_cov_16.678095:1-646 [pilon] Processing NODE_7809_length_427_cov_0.656863:1-427 [pilon] NODE_13636_length_243_cov_17.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13636_length_243_cov_17.163934:1-243 [pilon] Processing NODE_12062_length_245_cov_20.709677:1-245 [pilon] NODE_11563_length_261_cov_26.571429:1-261 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 79, Coverage: 6, minDepth: 5 [pilon] Confirmed 148 of 261 bases (56.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11563_length_261_cov_26.571429:1-261 [pilon] Processing NODE_2701_length_929_cov_1.855198:1-929 [pilon] NODE_2467_length_974_cov_16.218054:1-974 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 295, Coverage: 28, minDepth: 7 [pilon] Confirmed 876 of 974 bases (89.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2467_length_974_cov_16.218054:1-974 [pilon] Processing NODE_4597_length_653_cov_32.084586:1-653 [pilon] NODE_7000_length_471_cov_27.682857:1-471 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 201, Coverage: 20, minDepth: 5 [pilon] Confirmed 379 of 471 bases (80.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7000_length_471_cov_27.682857:1-471 [pilon] Processing NODE_13970_length_243_cov_14.319672:1-243 [pilon] NODE_10577_length_302_cov_18.773481:1-302 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 64, Coverage: 9, minDepth: 5 [pilon] Confirmed 240 of 302 bases (79.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10577_length_302_cov_18.773481:1-302 [pilon] Processing NODE_5514_length_576_cov_13.841758:1-576 [pilon] NODE_557_length_1850_cov_19.337189:1-1850 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 849, Coverage: 39, minDepth: 10 [pilon] Confirmed 1540 of 1850 bases (83.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_557_length_1850_cov_19.337189:1-1850 [pilon] Processing NODE_455_length_1968_cov_4.048186:1-1968 [pilon] NODE_8315_length_404_cov_1.042403:1-404 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 201 of 404 bases (49.75%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8315_length_404_cov_1.042403:1-404 [pilon] Processing NODE_4432_length_668_cov_2.466179:1-668 [pilon] NODE_1099_length_1441_cov_18.608333:1-1441 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 584, Coverage: 39, minDepth: 10 [pilon] Confirmed 1313 of 1441 bases (91.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1099_length_1441_cov_18.608333:1-1441 [pilon] Processing NODE_7374_length_450_cov_2.276596:1-450 [pilon] NODE_1084_length_1450_cov_3.592175:1-1450 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 127, Coverage: 11, minDepth: 5 [pilon] Confirmed 1110 of 1450 bases (76.55%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1084_length_1450_cov_3.592175:1-1450 [pilon] Processing NODE_8690_length_383_cov_9.854962:1-383 [pilon] NODE_10395_length_309_cov_16.265957:1-309 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 72, Coverage: 3, minDepth: 5 [pilon] Confirmed 82 of 309 bases (26.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10395_length_309_cov_16.265957:1-309 [pilon] Processing NODE_11413_length_267_cov_15.041096:1-267 [pilon] NODE_12218_length_243_cov_35.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12218_length_243_cov_35.909836:1-243 [pilon] Processing NODE_13818_length_243_cov_15.524590:1-243 [pilon] NODE_9122_length_360_cov_23.083682:1-360 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 129, Coverage: 3, minDepth: 5 [pilon] Confirmed 123 of 360 bases (34.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9122_length_360_cov_23.083682:1-360 [pilon] NODE_11619_length_259_cov_1.224638:1-259 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 259 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_5350_length_588_cov_20.678801:1-588 [pilon] Finished processing NODE_11619_length_259_cov_1.224638:1-259 [pilon] Processing NODE_14000_length_243_cov_14.180328:1-243 [pilon] NODE_14082_length_243_cov_13.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14082_length_243_cov_13.614754:1-243 [pilon] Processing NODE_64_length_3383_cov_10.114960:1-3383 [pilon] NODE_1999_length_1087_cov_5.019669:1-1087 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 140, Coverage: 16, minDepth: 5 [pilon] Confirmed 940 of 1087 bases (86.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1999_length_1087_cov_5.019669:1-1087 [pilon] Processing NODE_1994_length_1088_cov_22.816960:1-1088 [pilon] NODE_14591_length_243_cov_9.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14591_length_243_cov_9.483607:1-243 [pilon] Processing NODE_9210_length_357_cov_18.601695:1-357 [pilon] NODE_11880_length_249_cov_33.289062:1-249 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 89, Coverage: 8, minDepth: 5 [pilon] Confirmed 211 of 249 bases (84.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11880_length_249_cov_33.289062:1-249 [pilon] Processing NODE_14225_length_243_cov_12.377049:1-243 [pilon] NODE_4151_length_699_cov_1.301038:1-699 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 181 of 699 bases (25.89%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4151_length_699_cov_1.301038:1-699 [pilon] Processing NODE_11577_length_261_cov_18.307143:1-261 [pilon] NODE_4272_length_684_cov_19.808171:1-684 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 248, Coverage: 30, minDepth: 8 [pilon] Confirmed 513 of 684 bases (75.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4272_length_684_cov_19.808171:1-684 [pilon] Processing NODE_6212_length_523_cov_25.343284:1-523 [pilon] NODE_4432_length_668_cov_2.466179:1-668 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 34, Coverage: 6, minDepth: 5 [pilon] Confirmed 434 of 668 bases (64.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4432_length_668_cov_2.466179:1-668 [pilon] Processing NODE_3700_length_754_cov_28.123223:1-754 [pilon] NODE_5828_length_553_cov_41.398148:1-553 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 407, Coverage: 71, minDepth: 18 [pilon] Confirmed 454 of 553 bases (82.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5828_length_553_cov_41.398148:1-553 [pilon] Processing NODE_9755_length_336_cov_14.511628:1-336 [pilon] NODE_10744_length_296_cov_12.902857:1-296 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 45, Coverage: 4, minDepth: 5 [pilon] Confirmed 160 of 296 bases (54.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10744_length_296_cov_12.902857:1-296 [pilon] Processing NODE_12355_length_243_cov_31.991803:1-243 [pilon] NODE_12685_length_243_cov_26.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12685_length_243_cov_26.401639:1-243 [pilon] Processing NODE_2561_length_955_cov_1.884892:1-955 [pilon] NODE_5073_length_612_cov_41.784114:1-612 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 505, Coverage: 65, minDepth: 16 [pilon] Confirmed 486 of 612 bases (79.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5073_length_612_cov_41.784114:1-612 [pilon] Processing NODE_5003_length_618_cov_17.762575:1-618 [pilon] NODE_9953_length_327_cov_25.975728:1-327 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 120, Coverage: 15, minDepth: 5 [pilon] Confirmed 243 of 327 bases (74.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9953_length_327_cov_25.975728:1-327 [pilon] Processing NODE_6414_length_510_cov_1.318766:1-510 [pilon] NODE_12677_length_243_cov_26.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12677_length_243_cov_26.483607:1-243 [pilon] Processing NODE_15022_length_243_cov_5.147541:1-243 [pilon] NODE_12062_length_245_cov_20.709677:1-245 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 60, Coverage: 3, minDepth: 5 [pilon] Confirmed 60 of 245 bases (24.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12062_length_245_cov_20.709677:1-245 [pilon] Processing NODE_14276_length_243_cov_12.040984:1-243 [pilon] NODE_7763_length_429_cov_15.753247:1-429 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 114, Coverage: 13, minDepth: 5 [pilon] Confirmed 266 of 429 bases (62.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7763_length_429_cov_15.753247:1-429 [pilon] Processing NODE_4372_length_674_cov_1.356239:1-674 [pilon] NODE_1757_length_1158_cov_19.464802:1-1158 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 453, Coverage: 30, minDepth: 8 [pilon] Confirmed 888 of 1158 bases (76.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1757_length_1158_cov_19.464802:1-1158 [pilon] Processing NODE_2722_length_925_cov_1.863184:1-925 [pilon] NODE_13785_length_243_cov_15.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13785_length_243_cov_15.795082:1-243 [pilon] Processing NODE_12176_length_243_cov_37.639344:1-243 [pilon] NODE_2701_length_929_cov_1.855198:1-929 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 54, Coverage: 8, minDepth: 5 [pilon] Confirmed 536 of 929 bases (57.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2701_length_929_cov_1.855198:1-929 [pilon] Processing NODE_10073_length_322_cov_16.228856:1-322 [pilon] NODE_7809_length_427_cov_0.656863:1-427 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 427 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_1994_length_1088_cov_22.816960:1-1088 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 540, Coverage: 30, minDepth: 8 [pilon] Confirmed 873 of 1088 bases (80.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7809_length_427_cov_0.656863:1-427 [pilon] Finished processing NODE_1994_length_1088_cov_22.816960:1-1088 [pilon] Processing NODE_13764_length_243_cov_15.934426:1-243 [pilon] Processing NODE_2631_length_941_cov_6.084146:1-941 [pilon] NODE_5350_length_588_cov_20.678801:1-588 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 216, Coverage: 23, minDepth: 6 [pilon] Confirmed 450 of 588 bases (76.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5350_length_588_cov_20.678801:1-588 [pilon] Processing NODE_5921_length_546_cov_14.682353:1-546 [pilon] NODE_5514_length_576_cov_13.841758:1-576 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 146, Coverage: 15, minDepth: 5 [pilon] Confirmed 452 of 576 bases (78.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5514_length_576_cov_13.841758:1-576 [pilon] Processing NODE_10858_length_290_cov_12.218935:1-290 [pilon] NODE_13970_length_243_cov_14.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13970_length_243_cov_14.319672:1-243 [pilon] Processing NODE_5009_length_618_cov_0.668008:1-618 [pilon] NODE_4597_length_653_cov_32.084586:1-653 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 374, Coverage: 57, minDepth: 14 [pilon] Confirmed 566 of 653 bases (86.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4597_length_653_cov_32.084586:1-653 [pilon] Processing NODE_12684_length_243_cov_26.401639:1-243 [pilon] NODE_455_length_1968_cov_4.048186:1-1968 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 180, Coverage: 11, minDepth: 5 [pilon] Confirmed 1554 of 1968 bases (78.96%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_455_length_1968_cov_4.048186:1-1968 [pilon] Processing NODE_8526_length_392_cov_60.833948:1-392 [pilon] NODE_7374_length_450_cov_2.276596:1-450 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 230 of 450 bases (51.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7374_length_450_cov_2.276596:1-450 [pilon] Processing NODE_1359_length_1314_cov_21.559095:1-1314 [pilon] NODE_8690_length_383_cov_9.854962:1-383 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 68, Coverage: 8, minDepth: 5 [pilon] Confirmed 301 of 383 bases (78.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8690_length_383_cov_9.854962:1-383 [pilon] Processing NODE_11312_length_271_cov_6.073333:1-271 [pilon] NODE_13818_length_243_cov_15.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13818_length_243_cov_15.524590:1-243 [pilon] Processing NODE_13267_length_243_cov_20.442623:1-243 [pilon] NODE_14000_length_243_cov_14.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14000_length_243_cov_14.180328:1-243 [pilon] Processing NODE_9465_length_348_cov_5.894273:1-348 [pilon] NODE_11413_length_267_cov_15.041096:1-267 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 43, Coverage: 4, minDepth: 5 [pilon] Confirmed 121 of 267 bases (45.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11413_length_267_cov_15.041096:1-267 [pilon] Processing NODE_12591_length_243_cov_27.663934:1-243 [pilon] NODE_9210_length_357_cov_18.601695:1-357 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 80, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 357 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9210_length_357_cov_18.601695:1-357 [pilon] Processing NODE_6701_length_490_cov_11.875339:1-490 [pilon] NODE_64_length_3383_cov_10.114960:1-3383 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 880, Coverage: 31, minDepth: 8 [pilon] Confirmed 2666 of 3383 bases (78.81%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_64_length_3383_cov_10.114960:1-3383 [pilon] Processing NODE_5410_length_583_cov_12.831169:1-583 [pilon] NODE_3700_length_754_cov_28.123223:1-754 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 501, Coverage: 60, minDepth: 15 [pilon] Confirmed 700 of 754 bases (92.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3700_length_754_cov_28.123223:1-754 [pilon] Processing NODE_4465_length_664_cov_27.904236:1-664 [pilon] NODE_14225_length_243_cov_12.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14225_length_243_cov_12.377049:1-243 [pilon] Processing NODE_1313_length_1334_cov_14.089035:1-1334 [pilon] NODE_11577_length_261_cov_18.307143:1-261 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 54, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 261 bases (49.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11577_length_261_cov_18.307143:1-261 [pilon] Processing NODE_1587_length_1224_cov_15.073436:1-1224 [pilon] NODE_2631_length_941_cov_6.084146:1-941 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 131, Coverage: 15, minDepth: 5 [pilon] Confirmed 834 of 941 bases (88.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2631_length_941_cov_6.084146:1-941 [pilon] Processing NODE_12894_length_243_cov_24.131148:1-243 [pilon] NODE_6212_length_523_cov_25.343284:1-523 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 243, Coverage: 34, minDepth: 9 [pilon] Confirmed 439 of 523 bases (83.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6212_length_523_cov_25.343284:1-523 [pilon] Processing NODE_2479_length_970_cov_48.272085:1-970 [pilon] NODE_5921_length_546_cov_14.682353:1-546 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 146, Coverage: 18, minDepth: 5 [pilon] Confirmed 393 of 546 bases (71.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5921_length_546_cov_14.682353:1-546 [pilon] Processing NODE_4643_length_648_cov_19.265655:1-648 [pilon] NODE_15022_length_243_cov_5.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15022_length_243_cov_5.147541:1-243 [pilon] Processing NODE_13956_length_243_cov_14.467213:1-243 [pilon] NODE_9755_length_336_cov_14.511628:1-336 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 73, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 336 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9755_length_336_cov_14.511628:1-336 [pilon] Processing NODE_4884_length_628_cov_4.412229:1-628 [pilon] NODE_2561_length_955_cov_1.884892:1-955 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 45, Coverage: 6, minDepth: 5 [pilon] Confirmed 509 of 955 bases (53.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2561_length_955_cov_1.884892:1-955 [pilon] Processing NODE_4234_length_689_cov_8.607394:1-689 [pilon] NODE_12355_length_243_cov_31.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12355_length_243_cov_31.991803:1-243 [pilon] NODE_14276_length_243_cov_12.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_1294_length_1343_cov_4.833879:1-1343 [pilon] Finished processing NODE_14276_length_243_cov_12.040984:1-243 [pilon] Processing NODE_5885_length_549_cov_9.247664:1-549 [pilon] NODE_5003_length_618_cov_17.762575:1-618 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 196, Coverage: 29, minDepth: 7 [pilon] Confirmed 410 of 618 bases (66.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5003_length_618_cov_17.762575:1-618 [pilon] Processing NODE_11362_length_270_cov_5.154362:1-270 [pilon] NODE_10073_length_322_cov_16.228856:1-322 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 75, Coverage: 8, minDepth: 5 [pilon] Confirmed 232 of 322 bases (72.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_6414_length_510_cov_1.318766:1-510 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 168 of 510 bases (32.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6414_length_510_cov_1.318766:1-510 [pilon] Finished processing NODE_10073_length_322_cov_16.228856:1-322 [pilon] Processing NODE_5789_length_556_cov_15.140230:1-556 [pilon] Processing NODE_13808_length_243_cov_15.573770:1-243 [pilon] NODE_12176_length_243_cov_37.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12176_length_243_cov_37.639344:1-243 [pilon] Processing NODE_9562_length_343_cov_16.135135:1-343 [pilon] NODE_2722_length_925_cov_1.863184:1-925 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 57, Coverage: 8, minDepth: 5 [pilon] Confirmed 600 of 925 bases (64.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2722_length_925_cov_1.863184:1-925 [pilon] Processing NODE_2725_length_923_cov_39.036160:1-923 [pilon] NODE_10858_length_290_cov_12.218935:1-290 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 34, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 290 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10858_length_290_cov_12.218935:1-290 [pilon] Processing NODE_2735_length_921_cov_18.198750:1-921 [pilon] NODE_4372_length_674_cov_1.356239:1-674 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 324 of 674 bases (48.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4372_length_674_cov_1.356239:1-674 [pilon] Processing NODE_1642_length_1203_cov_2.242144:1-1203 [pilon] NODE_13764_length_243_cov_15.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13764_length_243_cov_15.934426:1-243 [pilon] Processing NODE_13440_length_243_cov_18.934426:1-243 [pilon] NODE_12684_length_243_cov_26.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12684_length_243_cov_26.401639:1-243 [pilon] Processing NODE_10368_length_310_cov_13.253968:1-310 [pilon] NODE_5009_length_618_cov_0.668008:1-618 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 9 of 618 bases (1.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5009_length_618_cov_0.668008:1-618 [pilon] Processing NODE_7574_length_439_cov_27.257862:1-439 [pilon] NODE_13267_length_243_cov_20.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13267_length_243_cov_20.442623:1-243 [pilon] Processing NODE_2061_length_1069_cov_30.909283:1-1069 [pilon] NODE_8526_length_392_cov_60.833948:1-392 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 364, Coverage: 63, minDepth: 16 [pilon] Confirmed 343 of 392 bases (87.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8526_length_392_cov_60.833948:1-392 [pilon] Processing NODE_9172_length_358_cov_34.257384:1-358 [pilon] NODE_11312_length_271_cov_6.073333:1-271 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 23, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 271 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11312_length_271_cov_6.073333:1-271 [pilon] Processing NODE_9236_length_356_cov_43.995745:1-356 [pilon] NODE_1359_length_1314_cov_21.559095:1-1314 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 695, Coverage: 28, minDepth: 7 [pilon] Confirmed 1121 of 1314 bases (85.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1359_length_1314_cov_21.559095:1-1314 [pilon] Processing NODE_8717_length_381_cov_24.992308:1-381 [pilon] NODE_9465_length_348_cov_5.894273:1-348 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 37, Coverage: 3, minDepth: 5 [pilon] Confirmed 128 of 348 bases (36.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9465_length_348_cov_5.894273:1-348 [pilon] Processing NODE_10359_length_311_cov_1.384211:1-311 [pilon] NODE_12591_length_243_cov_27.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12591_length_243_cov_27.663934:1-243 [pilon] Processing NODE_6873_length_479_cov_27.108939:1-479 [pilon] NODE_6701_length_490_cov_11.875339:1-490 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 187, Coverage: 32, minDepth: 8 [pilon] Confirmed 375 of 490 bases (76.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6701_length_490_cov_11.875339:1-490 [pilon] Processing NODE_9458_length_348_cov_10.189427:1-348 [pilon] NODE_5410_length_583_cov_12.831169:1-583 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 177, Coverage: 20, minDepth: 5 [pilon] Confirmed 510 of 583 bases (87.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5410_length_583_cov_12.831169:1-583 [pilon] Processing NODE_10560_length_303_cov_9.060440:1-303 [pilon] NODE_4465_length_664_cov_27.904236:1-664 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 370, Coverage: 36, minDepth: 9 [pilon] Confirmed 530 of 664 bases (79.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4465_length_664_cov_27.904236:1-664 [pilon] Processing NODE_2551_length_956_cov_26.014371:1-956 [pilon] NODE_4643_length_648_cov_19.265655:1-648 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 230, Coverage: 28, minDepth: 7 [pilon] Confirmed 497 of 648 bases (76.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4643_length_648_cov_19.265655:1-648 [pilon] Processing NODE_13790_length_243_cov_15.778689:1-243 [pilon] NODE_13956_length_243_cov_14.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13956_length_243_cov_14.467213:1-243 [pilon] Processing NODE_10856_length_290_cov_16.112426:1-290 [pilon] NODE_1313_length_1334_cov_14.089035:1-1334 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 384, Coverage: 29, minDepth: 7 [pilon] Confirmed 963 of 1334 bases (72.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1313_length_1334_cov_14.089035:1-1334 [pilon] Processing NODE_5938_length_545_cov_17.007075:1-545 [pilon] NODE_12894_length_243_cov_24.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12894_length_243_cov_24.131148:1-243 [pilon] Processing NODE_8582_length_389_cov_32.197761:1-389 [pilon] NODE_1587_length_1224_cov_15.073436:1-1224 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 388, Coverage: 26, minDepth: 7 [pilon] Confirmed 987 of 1224 bases (80.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1587_length_1224_cov_15.073436:1-1224 [pilon] Processing NODE_3592_length_770_cov_17.303544:1-770 [pilon] NODE_11362_length_270_cov_5.154362:1-270 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 65 of 270 bases (24.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11362_length_270_cov_5.154362:1-270 [pilon] Processing NODE_2507_length_966_cov_21.648521:1-966 [pilon] NODE_4884_length_628_cov_4.412229:1-628 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 58, Coverage: 12, minDepth: 5 [pilon] Confirmed 394 of 628 bases (62.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4884_length_628_cov_4.412229:1-628 [pilon] Processing NODE_15188_length_164_cov_1.860465:1-164 [pilon] NODE_5885_length_549_cov_9.247664:1-549 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 91, Coverage: 13, minDepth: 5 [pilon] Confirmed 319 of 549 bases (58.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5885_length_549_cov_9.247664:1-549 [pilon] Processing NODE_7890_length_423_cov_19.894040:1-423 [pilon] NODE_13808_length_243_cov_15.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13808_length_243_cov_15.573770:1-243 [pilon] Processing NODE_13687_length_243_cov_16.524590:1-243 [pilon] NODE_4234_length_689_cov_8.607394:1-689 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 114, Coverage: 22, minDepth: 6 [pilon] Confirmed 522 of 689 bases (75.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4234_length_689_cov_8.607394:1-689 [pilon] NODE_2479_length_970_cov_48.272085:1-970 log: [pilon] frags shovill.bam: coverage 103 [pilon] Total Reads: 941, Coverage: 103, minDepth: 26 [pilon] Confirmed 872 of 970 bases (89.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_13607_length_243_cov_17.442623:1-243 [pilon] Finished processing NODE_2479_length_970_cov_48.272085:1-970 [pilon] Processing NODE_14115_length_243_cov_13.377049:1-243 [pilon] NODE_9562_length_343_cov_16.135135:1-343 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 71, Coverage: 16, minDepth: 5 [pilon] Confirmed 302 of 343 bases (88.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9562_length_343_cov_16.135135:1-343 [pilon] Processing NODE_14144_length_243_cov_13.180328:1-243 [pilon] NODE_5789_length_556_cov_15.140230:1-556 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 151, Coverage: 22, minDepth: 6 [pilon] Confirmed 418 of 556 bases (75.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5789_length_556_cov_15.140230:1-556 [pilon] Processing NODE_8494_length_394_cov_19.648352:1-394 [pilon] NODE_1294_length_1343_cov_4.833879:1-1343 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 144, Coverage: 13, minDepth: 5 [pilon] Confirmed 1157 of 1343 bases (86.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1294_length_1343_cov_4.833879:1-1343 [pilon] Processing NODE_14656_length_243_cov_8.967213:1-243 [pilon] NODE_1642_length_1203_cov_2.242144:1-1203 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 76, Coverage: 8, minDepth: 5 [pilon] Confirmed 977 of 1203 bases (81.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1642_length_1203_cov_2.242144:1-1203 [pilon] Processing NODE_9961_length_327_cov_20.077670:1-327 [pilon] NODE_2725_length_923_cov_39.036160:1-923 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 734, Coverage: 72, minDepth: 18 [pilon] Confirmed 795 of 923 bases (86.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2725_length_923_cov_39.036160:1-923 [pilon] Processing NODE_3764_length_745_cov_33.275641:1-745 [pilon] NODE_10368_length_310_cov_13.253968:1-310 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 49, Coverage: 6, minDepth: 5 [pilon] Confirmed 180 of 310 bases (58.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10368_length_310_cov_13.253968:1-310 [pilon] Processing NODE_7922_length_422_cov_3.767442:1-422 [pilon] NODE_2735_length_921_cov_18.198750:1-921 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 328, Coverage: 33, minDepth: 8 [pilon] Confirmed 720 of 921 bases (78.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2735_length_921_cov_18.198750:1-921 [pilon] Processing NODE_4739_length_640_cov_3.909441:1-640 [pilon] NODE_7574_length_439_cov_27.257862:1-439 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 230, Coverage: 42, minDepth: 11 [pilon] Confirmed 369 of 439 bases (84.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7574_length_439_cov_27.257862:1-439 [pilon] Processing NODE_3750_length_747_cov_17.353035:1-747 [pilon] NODE_13790_length_243_cov_15.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13790_length_243_cov_15.778689:1-243 [pilon] Processing NODE_443_length_1977_cov_26.233836:1-1977 [pilon] NODE_13440_length_243_cov_18.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13440_length_243_cov_18.934426:1-243 [pilon] Processing NODE_13593_length_243_cov_17.565574:1-243 [pilon] NODE_9236_length_356_cov_43.995745:1-356 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 232, Coverage: 33, minDepth: 8 [pilon] Confirmed 307 of 356 bases (86.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9236_length_356_cov_43.995745:1-356 [pilon] Processing NODE_6432_length_508_cov_2.217054:1-508 [pilon] NODE_8717_length_381_cov_24.992308:1-381 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 159, Coverage: 24, minDepth: 6 [pilon] Confirmed 282 of 381 bases (74.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8717_length_381_cov_24.992308:1-381 [pilon] Processing NODE_10104_length_321_cov_17.805000:1-321 [pilon] NODE_6873_length_479_cov_27.108939:1-479 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 218, Coverage: 19, minDepth: 5 [pilon] Confirmed 345 of 479 bases (72.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6873_length_479_cov_27.108939:1-479 [pilon] Processing NODE_11912_length_249_cov_15.554688:1-249 [pilon] NODE_2061_length_1069_cov_30.909283:1-1069 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 674, Coverage: 69, minDepth: 17 [pilon] Confirmed 887 of 1069 bases (82.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2061_length_1069_cov_30.909283:1-1069 [pilon] Processing NODE_4938_length_623_cov_4.284861:1-623 [pilon] NODE_10359_length_311_cov_1.384211:1-311 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 311 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10359_length_311_cov_1.384211:1-311 [pilon] Processing NODE_8377_length_401_cov_58.971429:1-401 [pilon] NODE_9172_length_358_cov_34.257384:1-358 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 152, Coverage: 25, minDepth: 6 [pilon] Confirmed 264 of 358 bases (73.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9172_length_358_cov_34.257384:1-358 [pilon] Processing NODE_14463_length_243_cov_10.581967:1-243 [pilon] NODE_9458_length_348_cov_10.189427:1-348 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 50, Coverage: 2, minDepth: 5 [pilon] Confirmed 106 of 348 bases (30.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9458_length_348_cov_10.189427:1-348 [pilon] Processing NODE_11439_length_266_cov_10.958621:1-266 [pilon] NODE_10856_length_290_cov_16.112426:1-290 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 51, Coverage: 7, minDepth: 5 [pilon] Confirmed 179 of 290 bases (61.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10856_length_290_cov_16.112426:1-290 [pilon] Processing NODE_1820_length_1139_cov_27.068762:1-1139 [pilon] NODE_10560_length_303_cov_9.060440:1-303 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 38, Coverage: 2, minDepth: 5 [pilon] Confirmed 54 of 303 bases (17.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10560_length_303_cov_9.060440:1-303 [pilon] Processing NODE_6459_length_506_cov_41.854545:1-506 [pilon] NODE_2507_length_966_cov_21.648521:1-966 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 524, Coverage: 43, minDepth: 11 [pilon] Confirmed 685 of 966 bases (70.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2507_length_966_cov_21.648521:1-966 [pilon] Processing NODE_1558_length_1236_cov_14.072646:1-1236 [pilon] NODE_2551_length_956_cov_26.014371:1-956 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 566, Coverage: 42, minDepth: 11 [pilon] Confirmed 845 of 956 bases (88.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2551_length_956_cov_26.014371:1-956 [pilon] Processing NODE_7637_length_436_cov_0.526984:1-436 [pilon] NODE_5938_length_545_cov_17.007075:1-545 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 167, Coverage: 17, minDepth: 5 [pilon] Confirmed 365 of 545 bases (66.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5938_length_545_cov_17.007075:1-545 [pilon] Processing NODE_14853_length_243_cov_7.131148:1-243 [pilon] NODE_8582_length_389_cov_32.197761:1-389 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 204, Coverage: 32, minDepth: 8 [pilon] Confirmed 341 of 389 bases (87.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8582_length_389_cov_32.197761:1-389 [pilon] Processing NODE_3266_length_820_cov_15.284692:1-820 [pilon] NODE_15188_length_164_cov_1.860465:1-164 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 164 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15188_length_164_cov_1.860465:1-164 [pilon] Processing NODE_10034_length_324_cov_16.088670:1-324 [pilon] NODE_3592_length_770_cov_17.303544:1-770 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 260, Coverage: 36, minDepth: 9 [pilon] Confirmed 660 of 770 bases (85.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3592_length_770_cov_17.303544:1-770 [pilon] Processing NODE_11176_length_276_cov_26.154839:1-276 [pilon] NODE_13687_length_243_cov_16.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13687_length_243_cov_16.524590:1-243 [pilon] Processing NODE_14439_length_243_cov_10.737705:1-243 [pilon] NODE_14115_length_243_cov_13.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_13607_length_243_cov_17.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13607_length_243_cov_17.442623:1-243 [pilon] Finished processing NODE_14115_length_243_cov_13.377049:1-243 [pilon] Processing NODE_5455_length_580_cov_23.845316:1-580 [pilon] Processing NODE_1909_length_1110_cov_14.081901:1-1110 [pilon] NODE_7890_length_423_cov_19.894040:1-423 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 116, Coverage: 6, minDepth: 5 [pilon] Confirmed 213 of 423 bases (50.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7890_length_423_cov_19.894040:1-423 [pilon] Processing NODE_2864_length_899_cov_40.406170:1-899 [pilon] NODE_443_length_1977_cov_26.233836:1-1977 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 1214, Coverage: 52, minDepth: 13 [pilon] Confirmed 1910 of 1977 bases (96.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_443_length_1977_cov_26.233836:1-1977 [pilon] Processing NODE_14900_length_243_cov_6.713115:1-243 [pilon] NODE_14144_length_243_cov_13.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14144_length_243_cov_13.180328:1-243 [pilon] Processing NODE_12479_length_243_cov_29.459016:1-243 [pilon] NODE_9961_length_327_cov_20.077670:1-327 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 89, Coverage: 10, minDepth: 5 [pilon] Confirmed 232 of 327 bases (70.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9961_length_327_cov_20.077670:1-327 [pilon] Processing NODE_9933_length_328_cov_25.927536:1-328 [pilon] NODE_14656_length_243_cov_8.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14656_length_243_cov_8.967213:1-243 [pilon] Processing NODE_11281_length_273_cov_11.144737:1-273 [pilon] NODE_8494_length_394_cov_19.648352:1-394 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 124, Coverage: 16, minDepth: 5 [pilon] Confirmed 258 of 394 bases (65.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8494_length_394_cov_19.648352:1-394 [pilon] Processing NODE_2728_length_923_cov_1.451372:1-923 [pilon] NODE_1820_length_1139_cov_27.068762:1-1139 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 680, Coverage: 55, minDepth: 14 [pilon] Confirmed 859 of 1139 bases (75.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1820_length_1139_cov_27.068762:1-1139 [pilon] Processing NODE_8942_length_369_cov_14.830645:1-369 [pilon] NODE_3764_length_745_cov_33.275641:1-745 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 472, Coverage: 63, minDepth: 16 [pilon] Confirmed 639 of 745 bases (85.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3764_length_745_cov_33.275641:1-745 [pilon] Processing NODE_2184_length_1038_cov_17.841876:1-1038 [pilon] NODE_4739_length_640_cov_3.909441:1-640 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 58, Coverage: 11, minDepth: 5 [pilon] Confirmed 545 of 640 bases (85.16%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4739_length_640_cov_3.909441:1-640 [pilon] Processing NODE_12781_length_243_cov_25.237705:1-243 [pilon] NODE_11912_length_249_cov_15.554688:1-249 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11912_length_249_cov_15.554688:1-249 [pilon] Processing NODE_13381_length_243_cov_19.532787:1-243 [pilon] NODE_3750_length_747_cov_17.353035:1-747 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 276, Coverage: 27, minDepth: 7 [pilon] Confirmed 564 of 747 bases (75.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3750_length_747_cov_17.353035:1-747 [pilon] Processing NODE_1986_length_1090_cov_36.010320:1-1090 [pilon] NODE_1558_length_1236_cov_14.072646:1-1236 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 385, Coverage: 30, minDepth: 8 [pilon] Confirmed 1181 of 1236 bases (95.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1558_length_1236_cov_14.072646:1-1236 [pilon] Processing NODE_9125_length_360_cov_20.234310:1-360 [pilon] NODE_13593_length_243_cov_17.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13593_length_243_cov_17.565574:1-243 [pilon] Processing NODE_9387_length_351_cov_12.778261:1-351 [pilon] NODE_7922_length_422_cov_3.767442:1-422 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 26, Coverage: 7, minDepth: 5 [pilon] Confirmed 301 of 422 bases (71.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7922_length_422_cov_3.767442:1-422 [pilon] Processing NODE_6551_length_500_cov_28.385224:1-500 [pilon] NODE_6432_length_508_cov_2.217054:1-508 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 319 of 508 bases (62.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6432_length_508_cov_2.217054:1-508 [pilon] Processing NODE_14142_length_243_cov_13.188525:1-243 [pilon] NODE_10104_length_321_cov_17.805000:1-321 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 86, Coverage: 11, minDepth: 5 [pilon] Confirmed 249 of 321 bases (77.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10104_length_321_cov_17.805000:1-321 [pilon] Processing NODE_15133_length_201_cov_2.962500:1-201 [pilon] NODE_4938_length_623_cov_4.284861:1-623 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 49, Coverage: 10, minDepth: 5 [pilon] Confirmed 506 of 623 bases (81.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4938_length_623_cov_4.284861:1-623 [pilon] Processing NODE_12941_length_243_cov_23.524590:1-243 [pilon] NODE_8377_length_401_cov_58.971429:1-401 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 363, Coverage: 59, minDepth: 15 [pilon] Confirmed 357 of 401 bases (89.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8377_length_401_cov_58.971429:1-401 [pilon] Processing NODE_6831_length_481_cov_17.969444:1-481 [pilon] NODE_14463_length_243_cov_10.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14463_length_243_cov_10.581967:1-243 [pilon] Processing NODE_1376_length_1307_cov_56.822934:1-1307 [pilon] NODE_11439_length_266_cov_10.958621:1-266 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 266 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11439_length_266_cov_10.958621:1-266 [pilon] Processing NODE_896_length_1564_cov_1.956341:1-1564 [pilon] NODE_6459_length_506_cov_41.854545:1-506 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 336, Coverage: 54, minDepth: 14 [pilon] Confirmed 443 of 506 bases (87.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6459_length_506_cov_41.854545:1-506 [pilon] Processing NODE_2713_length_926_cov_15.422360:1-926 [pilon] NODE_7637_length_436_cov_0.526984:1-436 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 436 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7637_length_436_cov_0.526984:1-436 [pilon] Processing NODE_3273_length_819_cov_15.332378:1-819 [pilon] NODE_14853_length_243_cov_7.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14853_length_243_cov_7.131148:1-243 [pilon] Processing NODE_9079_length_363_cov_13.954545:1-363 [pilon] NODE_3266_length_820_cov_15.284692:1-820 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 234, Coverage: 24, minDepth: 6 [pilon] Confirmed 762 of 820 bases (92.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3266_length_820_cov_15.284692:1-820 [pilon] Processing NODE_4971_length_620_cov_33.853707:1-620 [pilon] NODE_14900_length_243_cov_6.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14900_length_243_cov_6.713115:1-243 [pilon] Processing NODE_1722_length_1172_cov_23.929591:1-1172 [pilon] NODE_8942_length_369_cov_14.830645:1-369 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 69, Coverage: 17, minDepth: 5 [pilon] Confirmed 285 of 369 bases (77.24%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8942_length_369_cov_14.830645:1-369 [pilon] Processing NODE_4744_length_639_cov_36.173745:1-639 [pilon] NODE_10034_length_324_cov_16.088670:1-324 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 250 of 324 bases (77.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10034_length_324_cov_16.088670:1-324 [pilon] Processing NODE_4119_length_703_cov_4.517182:1-703 [pilon] NODE_11176_length_276_cov_26.154839:1-276 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 89, Coverage: 9, minDepth: 5 [pilon] Confirmed 173 of 276 bases (62.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11176_length_276_cov_26.154839:1-276 [pilon] Processing NODE_9994_length_326_cov_11.590244:1-326 [pilon] NODE_14439_length_243_cov_10.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14439_length_243_cov_10.737705:1-243 [pilon] Processing NODE_9583_length_342_cov_23.076923:1-342 [pilon] NODE_9125_length_360_cov_20.234310:1-360 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 99, Coverage: 14, minDepth: 5 [pilon] Confirmed 241 of 360 bases (66.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9125_length_360_cov_20.234310:1-360 [pilon] Processing NODE_8811_length_376_cov_33.839216:1-376 [pilon] NODE_1909_length_1110_cov_14.081901:1-1110 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 358, Coverage: 36, minDepth: 9 [pilon] Confirmed 807 of 1110 bases (72.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1909_length_1110_cov_14.081901:1-1110 [pilon] Processing NODE_12667_length_243_cov_26.590164:1-243 [pilon] NODE_12479_length_243_cov_29.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12479_length_243_cov_29.459016:1-243 [pilon] Processing NODE_2623_length_942_cov_15.018270:1-942 [pilon] NODE_2864_length_899_cov_40.406170:1-899 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 782, Coverage: 68, minDepth: 17 [pilon] Confirmed 846 of 899 bases (94.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2864_length_899_cov_40.406170:1-899 [pilon] Processing NODE_2646_length_939_cov_2.371638:1-939 [pilon] NODE_9933_length_328_cov_25.927536:1-328 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 112, Coverage: 6, minDepth: 5 [pilon] Confirmed 163 of 328 bases (49.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9933_length_328_cov_25.927536:1-328 [pilon] Processing NODE_8160_length_411_cov_0.634483:1-411 [pilon] NODE_5455_length_580_cov_23.845316:1-580 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 231, Coverage: 25, minDepth: 6 [pilon] Confirmed 393 of 580 bases (67.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5455_length_580_cov_23.845316:1-580 [pilon] Processing NODE_10913_length_288_cov_14.778443:1-288 [pilon] NODE_11281_length_273_cov_11.144737:1-273 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 29, Coverage: 3, minDepth: 5 [pilon] Confirmed 74 of 273 bases (27.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11281_length_273_cov_11.144737:1-273 [pilon] Processing NODE_10946_length_286_cov_10.048485:1-286 [pilon] NODE_2728_length_923_cov_1.451372:1-923 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 352 of 923 bases (38.14%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2728_length_923_cov_1.451372:1-923 [pilon] Processing NODE_14808_length_243_cov_7.663934:1-243 [pilon] NODE_12781_length_243_cov_25.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12781_length_243_cov_25.237705:1-243 [pilon] Processing NODE_8097_length_414_cov_0.750853:1-414 [pilon] NODE_13381_length_243_cov_19.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13381_length_243_cov_19.532787:1-243 [pilon] Processing NODE_13106_length_243_cov_21.901639:1-243 [pilon] NODE_2184_length_1038_cov_17.841876:1-1038 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 372, Coverage: 34, minDepth: 9 [pilon] Confirmed 510 of 1038 bases (49.13%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2184_length_1038_cov_17.841876:1-1038 [pilon] Processing NODE_68_length_3325_cov_15.450999:1-3325 [pilon] NODE_15133_length_201_cov_2.962500:1-201 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 201 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15133_length_201_cov_2.962500:1-201 [pilon] Processing NODE_4555_length_657_cov_3.917910:1-657 [pilon] NODE_12941_length_243_cov_23.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12941_length_243_cov_23.524590:1-243 [pilon] Processing NODE_7474_length_444_cov_21.114551:1-444 [pilon] NODE_1986_length_1090_cov_36.010320:1-1090 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 838, Coverage: 90, minDepth: 23 [pilon] Confirmed 763 of 1090 bases (70.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1986_length_1090_cov_36.010320:1-1090 [pilon] Processing NODE_6819_length_482_cov_1.592798:1-482 [pilon] NODE_14142_length_243_cov_13.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14142_length_243_cov_13.188525:1-243 [pilon] Processing NODE_5592_length_571_cov_3.273333:1-571 [pilon] NODE_6831_length_481_cov_17.969444:1-481 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 163, Coverage: 19, minDepth: 5 [pilon] Confirmed 360 of 481 bases (74.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6831_length_481_cov_17.969444:1-481 [pilon] Processing NODE_2651_length_937_cov_20.721814:1-937 [pilon] NODE_9387_length_351_cov_12.778261:1-351 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 61, Coverage: 11, minDepth: 5 [pilon] Confirmed 253 of 351 bases (72.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9387_length_351_cov_12.778261:1-351 [pilon] Processing NODE_10914_length_288_cov_14.592814:1-288 [pilon] NODE_6551_length_500_cov_28.385224:1-500 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 218, Coverage: 38, minDepth: 10 [pilon] Confirmed 420 of 500 bases (84.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6551_length_500_cov_28.385224:1-500 [pilon] Processing NODE_11400_length_267_cov_19.424658:1-267 [pilon] NODE_896_length_1564_cov_1.956341:1-1564 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 97, Coverage: 8, minDepth: 5 [pilon] Confirmed 1055 of 1564 bases (67.46%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_896_length_1564_cov_1.956341:1-1564 [pilon] Processing NODE_10116_length_321_cov_11.990000:1-321 [pilon] NODE_1722_length_1172_cov_23.929591:1-1172 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 588, Coverage: 59, minDepth: 15 [pilon] Confirmed 928 of 1172 bases (79.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1722_length_1172_cov_23.929591:1-1172 [pilon] Processing NODE_897_length_1563_cov_4.649098:1-1563 [pilon] NODE_9079_length_363_cov_13.954545:1-363 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 81, Coverage: 7, minDepth: 5 [pilon] Confirmed 202 of 363 bases (55.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9079_length_363_cov_13.954545:1-363 [pilon] Processing NODE_274_length_2291_cov_1.837327:1-2291 [pilon] NODE_2713_length_926_cov_15.422360:1-926 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 294, Coverage: 28, minDepth: 7 [pilon] Confirmed 720 of 926 bases (77.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2713_length_926_cov_15.422360:1-926 [pilon] Processing NODE_11993_length_246_cov_20.208000:1-246 [pilon] NODE_1376_length_1307_cov_56.822934:1-1307 log: [pilon] frags shovill.bam: coverage 130 [pilon] Total Reads: 1487, Coverage: 130, minDepth: 33 [pilon] Confirmed 1237 of 1307 bases (94.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1376_length_1307_cov_56.822934:1-1307 [pilon] Processing NODE_4492_length_662_cov_28.482440:1-662 [pilon] NODE_3273_length_819_cov_15.332378:1-819 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 249, Coverage: 22, minDepth: 6 [pilon] Confirmed 541 of 819 bases (66.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3273_length_819_cov_15.332378:1-819 [pilon] Processing NODE_9295_length_354_cov_17.248927:1-354 [pilon] NODE_4744_length_639_cov_36.173745:1-639 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 428, Coverage: 46, minDepth: 12 [pilon] Confirmed 600 of 639 bases (93.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4744_length_639_cov_36.173745:1-639 [pilon] Processing NODE_8967_length_368_cov_20.987854:1-368 [pilon] NODE_4971_length_620_cov_33.853707:1-620 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 399, Coverage: 49, minDepth: 12 [pilon] Confirmed 397 of 620 bases (64.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4971_length_620_cov_33.853707:1-620 [pilon] Processing NODE_3907_length_726_cov_25.552066:1-726 [pilon] NODE_9994_length_326_cov_11.590244:1-326 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 47, Coverage: 8, minDepth: 5 [pilon] Confirmed 199 of 326 bases (61.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9994_length_326_cov_11.590244:1-326 [pilon] Processing NODE_14551_length_243_cov_9.901639:1-243 [pilon] NODE_4119_length_703_cov_4.517182:1-703 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 56, Coverage: 10, minDepth: 5 [pilon] Confirmed 312 of 703 bases (44.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4119_length_703_cov_4.517182:1-703 [pilon] Processing NODE_11477_length_264_cov_17.069930:1-264 [pilon] NODE_9583_length_342_cov_23.076923:1-342 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 105, Coverage: 6, minDepth: 5 [pilon] Confirmed 148 of 342 bases (43.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9583_length_342_cov_23.076923:1-342 [pilon] Processing NODE_8213_length_408_cov_3.216028:1-408 [pilon] NODE_12667_length_243_cov_26.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12667_length_243_cov_26.590164:1-243 [pilon] Processing NODE_15100_length_221_cov_22.910000:1-221 [pilon] NODE_8811_length_376_cov_33.839216:1-376 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 213, Coverage: 27, minDepth: 7 [pilon] Confirmed 356 of 376 bases (94.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8811_length_376_cov_33.839216:1-376 [pilon] Processing NODE_7027_length_470_cov_1.444126:1-470 [pilon] NODE_7474_length_444_cov_21.114551:1-444 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 167, Coverage: 19, minDepth: 5 [pilon] Confirmed 262 of 444 bases (59.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7474_length_444_cov_21.114551:1-444 [pilon] Processing NODE_1097_length_1442_cov_24.376230:1-1442 [pilon] NODE_8160_length_411_cov_0.634483:1-411 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 106 of 411 bases (25.79%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8160_length_411_cov_0.634483:1-411 [pilon] Processing NODE_6496_length_504_cov_10.195822:1-504 [pilon] NODE_2623_length_942_cov_15.018270:1-942 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 321, Coverage: 19, minDepth: 5 [pilon] Confirmed 593 of 942 bases (62.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2623_length_942_cov_15.018270:1-942 [pilon] Processing NODE_3861_length_732_cov_35.487725:1-732 [pilon] NODE_2646_length_939_cov_2.371638:1-939 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 56, Coverage: 7, minDepth: 5 [pilon] Confirmed 742 of 939 bases (79.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2646_length_939_cov_2.371638:1-939 [pilon] Processing NODE_10778_length_294_cov_17.312139:1-294 [pilon] NODE_13106_length_243_cov_21.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13106_length_243_cov_21.901639:1-243 [pilon] Processing NODE_5734_length_560_cov_25.405467:1-560 [pilon] NODE_10913_length_288_cov_14.778443:1-288 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 65, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10913_length_288_cov_14.778443:1-288 [pilon] NODE_10946_length_286_cov_10.048485:1-286 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 39, Coverage: 5, minDepth: 5 [pilon] Confirmed 132 of 286 bases (46.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10946_length_286_cov_10.048485:1-286 [pilon] Processing NODE_8048_length_416_cov_0.803390:1-416 [pilon] Processing NODE_10133_length_320_cov_44.944724:1-320 [pilon] NODE_14808_length_243_cov_7.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14808_length_243_cov_7.663934:1-243 [pilon] Processing NODE_7070_length_467_cov_2.323699:1-467 [pilon] NODE_8097_length_414_cov_0.750853:1-414 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 78 of 414 bases (18.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8097_length_414_cov_0.750853:1-414 [pilon] Processing NODE_12806_length_243_cov_24.975410:1-243 [pilon] NODE_4555_length_657_cov_3.917910:1-657 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 50, Coverage: 9, minDepth: 5 [pilon] Confirmed 505 of 657 bases (76.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4555_length_657_cov_3.917910:1-657 [pilon] Processing NODE_11952_length_247_cov_13.801587:1-247 [pilon] NODE_274_length_2291_cov_1.837327:1-2291 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 132, Coverage: 7, minDepth: 5 [pilon] Confirmed 1670 of 2291 bases (72.89%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_274_length_2291_cov_1.837327:1-2291 [pilon] Processing NODE_4864_length_629_cov_27.960630:1-629 [pilon] NODE_5592_length_571_cov_3.273333:1-571 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 38, Coverage: 9, minDepth: 5 [pilon] Confirmed 375 of 571 bases (65.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5592_length_571_cov_3.273333:1-571 [pilon] Processing NODE_10198_length_317_cov_60.153061:1-317 [pilon] NODE_897_length_1563_cov_4.649098:1-1563 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 198, Coverage: 12, minDepth: 5 [pilon] Confirmed 1097 of 1563 bases (70.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_897_length_1563_cov_4.649098:1-1563 [pilon] Processing NODE_7828_length_426_cov_9.180328:1-426 [pilon] NODE_6819_length_482_cov_1.592798:1-482 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 15, Coverage: 4, minDepth: 5 [pilon] Confirmed 211 of 482 bases (43.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6819_length_482_cov_1.592798:1-482 [pilon] Processing NODE_13092_length_243_cov_22.040984:1-243 [pilon] NODE_2651_length_937_cov_20.721814:1-937 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 469, Coverage: 33, minDepth: 8 [pilon] Confirmed 712 of 937 bases (75.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2651_length_937_cov_20.721814:1-937 [pilon] Processing NODE_9033_length_365_cov_6.118852:1-365 [pilon] NODE_68_length_3325_cov_15.450999:1-3325 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 1187, Coverage: 45, minDepth: 11 [pilon] Confirmed 2893 of 3325 bases (87.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_68_length_3325_cov_15.450999:1-3325 [pilon] Processing NODE_15233_length_140_cov_5.736842:1-140 [pilon] NODE_10914_length_288_cov_14.592814:1-288 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 60, Coverage: 5, minDepth: 5 [pilon] Confirmed 157 of 288 bases (54.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10914_length_288_cov_14.592814:1-288 [pilon] Processing NODE_3949_length_721_cov_2.566667:1-721 [pilon] NODE_10116_length_321_cov_11.990000:1-321 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 55, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 321 bases (40.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10116_length_321_cov_11.990000:1-321 [pilon] NODE_11400_length_267_cov_19.424658:1-267 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 65, Coverage: 7, minDepth: 5 [pilon] Confirmed 186 of 267 bases (69.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_4332_length_678_cov_1.271095:1-678 [pilon] Finished processing NODE_11400_length_267_cov_19.424658:1-267 [pilon] Processing NODE_4047_length_710_cov_52.354839:1-710 [pilon] NODE_11993_length_246_cov_20.208000:1-246 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 56, Coverage: 4, minDepth: 5 [pilon] Confirmed 83 of 246 bases (33.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11993_length_246_cov_20.208000:1-246 [pilon] Processing NODE_12777_length_243_cov_25.286885:1-243 [pilon] NODE_9295_length_354_cov_17.248927:1-354 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 83, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 354 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9295_length_354_cov_17.248927:1-354 [pilon] Processing NODE_6358_length_513_cov_11.505102:1-513 [pilon] NODE_4492_length_662_cov_28.482440:1-662 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 363, Coverage: 32, minDepth: 8 [pilon] Confirmed 578 of 662 bases (87.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4492_length_662_cov_28.482440:1-662 [pilon] Processing NODE_10346_length_312_cov_6.979058:1-312 [pilon] NODE_1097_length_1442_cov_24.376230:1-1442 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 712, Coverage: 57, minDepth: 14 [pilon] Confirmed 1126 of 1442 bases (78.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1097_length_1442_cov_24.376230:1-1442 [pilon] Processing NODE_14081_length_243_cov_13.622951:1-243 [pilon] NODE_3907_length_726_cov_25.552066:1-726 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 363, Coverage: 34, minDepth: 9 [pilon] Confirmed 536 of 726 bases (73.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3907_length_726_cov_25.552066:1-726 [pilon] Processing NODE_9682_length_339_cov_10.967890:1-339 [pilon] NODE_14551_length_243_cov_9.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14551_length_243_cov_9.901639:1-243 [pilon] Processing NODE_12003_length_246_cov_17.816000:1-246 [pilon] NODE_8213_length_408_cov_3.216028:1-408 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 27, Coverage: 8, minDepth: 5 [pilon] Confirmed 298 of 408 bases (73.04%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8213_length_408_cov_3.216028:1-408 [pilon] Processing NODE_13108_length_243_cov_21.885246:1-243 [pilon] NODE_8967_length_368_cov_20.987854:1-368 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 131, Coverage: 15, minDepth: 5 [pilon] Confirmed 294 of 368 bases (79.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8967_length_368_cov_20.987854:1-368 [pilon] Processing NODE_12852_length_243_cov_24.508197:1-243 [pilon] NODE_11477_length_264_cov_17.069930:1-264 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 62, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11477_length_264_cov_17.069930:1-264 [pilon] Processing NODE_9974_length_327_cov_12.985437:1-327 [pilon] NODE_4864_length_629_cov_27.960630:1-629 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 315, Coverage: 47, minDepth: 12 [pilon] Confirmed 495 of 629 bases (78.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4864_length_629_cov_27.960630:1-629 [pilon] Processing NODE_9906_length_330_cov_12.095694:1-330 [pilon] NODE_15100_length_221_cov_22.910000:1-221 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 221 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15100_length_221_cov_22.910000:1-221 [pilon] Processing NODE_8627_length_387_cov_15.812030:1-387 [pilon] NODE_7828_length_426_cov_9.180328:1-426 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 67, Coverage: 16, minDepth: 5 [pilon] Confirmed 342 of 426 bases (80.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7828_length_426_cov_9.180328:1-426 [pilon] Processing NODE_9124_length_360_cov_22.368201:1-360 [pilon] NODE_7027_length_470_cov_1.444126:1-470 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 95 of 470 bases (20.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7027_length_470_cov_1.444126:1-470 [pilon] Processing NODE_10851_length_290_cov_28.082840:1-290 [pilon] NODE_3861_length_732_cov_35.487725:1-732 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 515, Coverage: 52, minDepth: 13 [pilon] Confirmed 460 of 732 bases (62.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3861_length_732_cov_35.487725:1-732 [pilon] Processing NODE_8100_length_413_cov_79.092466:1-413 [pilon] NODE_10778_length_294_cov_17.312139:1-294 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 66, Coverage: 5, minDepth: 5 [pilon] Confirmed 165 of 294 bases (56.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10778_length_294_cov_17.312139:1-294 [pilon] NODE_6496_length_504_cov_10.195822:1-504 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 116, Coverage: 18, minDepth: 5 [pilon] Confirmed 379 of 504 bases (75.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6496_length_504_cov_10.195822:1-504 [pilon] Processing NODE_11731_length_255_cov_22.253731:1-255 [pilon] Processing NODE_2118_length_1055_cov_1.167024:1-1055 [pilon] NODE_5734_length_560_cov_25.405467:1-560 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 255, Coverage: 44, minDepth: 11 [pilon] Confirmed 481 of 560 bases (85.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5734_length_560_cov_25.405467:1-560 [pilon] Processing NODE_2802_length_909_cov_1.201777:1-909 [pilon] NODE_8048_length_416_cov_0.803390:1-416 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 416 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8048_length_416_cov_0.803390:1-416 [pilon] Processing NODE_14549_length_243_cov_9.918033:1-243 [pilon] NODE_10133_length_320_cov_44.944724:1-320 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 170, Coverage: 22, minDepth: 6 [pilon] Confirmed 238 of 320 bases (74.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10133_length_320_cov_44.944724:1-320 [pilon] Processing NODE_9422_length_349_cov_12.697368:1-349 [pilon] NODE_12806_length_243_cov_24.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12806_length_243_cov_24.975410:1-243 [pilon] Processing NODE_5038_length_616_cov_4.155556:1-616 [pilon] NODE_7070_length_467_cov_2.323699:1-467 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 242 of 467 bases (51.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7070_length_467_cov_2.323699:1-467 [pilon] NODE_13092_length_243_cov_22.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13092_length_243_cov_22.040984:1-243 [pilon] Processing NODE_5521_length_576_cov_1.573626:1-576 [pilon] Processing NODE_10829_length_291_cov_20.323529:1-291 [pilon] NODE_11952_length_247_cov_13.801587:1-247 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 50, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 247 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11952_length_247_cov_13.801587:1-247 [pilon] Processing NODE_4675_length_645_cov_39.889313:1-645 [pilon] NODE_10198_length_317_cov_60.153061:1-317 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 240, Coverage: 39, minDepth: 10 [pilon] Confirmed 273 of 317 bases (86.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10198_length_317_cov_60.153061:1-317 [pilon] Processing NODE_6894_length_477_cov_55.598315:1-477 [pilon] NODE_15233_length_140_cov_5.736842:1-140 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 140 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15233_length_140_cov_5.736842:1-140 [pilon] Processing NODE_2042_length_1074_cov_19.816369:1-1074 [pilon] NODE_12777_length_243_cov_25.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12777_length_243_cov_25.286885:1-243 [pilon] Processing NODE_1394_length_1298_cov_21.148683:1-1298 [pilon] NODE_9033_length_365_cov_6.118852:1-365 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 36, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 365 bases (35.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9033_length_365_cov_6.118852:1-365 [pilon] Processing NODE_7959_length_420_cov_11.745819:1-420 [pilon] NODE_4332_length_678_cov_1.271095:1-678 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 24, Coverage: 4, minDepth: 5 [pilon] Confirmed 215 of 678 bases (31.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4332_length_678_cov_1.271095:1-678 [pilon] Processing NODE_5061_length_614_cov_0.545639:1-614 [pilon] NODE_3949_length_721_cov_2.566667:1-721 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 52, Coverage: 8, minDepth: 5 [pilon] Confirmed 505 of 721 bases (70.04%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3949_length_721_cov_2.566667:1-721 [pilon] Processing NODE_1185_length_1405_cov_29.504673:1-1405 [pilon] NODE_4047_length_710_cov_52.354839:1-710 log: [pilon] frags shovill.bam: coverage 106 [pilon] Total Reads: 721, Coverage: 106, minDepth: 27 [pilon] Confirmed 606 of 710 bases (85.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4047_length_710_cov_52.354839:1-710 [pilon] Processing NODE_921_length_1544_cov_24.203092:1-1544 [pilon] NODE_6358_length_513_cov_11.505102:1-513 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 127, Coverage: 9, minDepth: 5 [pilon] Confirmed 450 of 513 bases (87.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6358_length_513_cov_11.505102:1-513 [pilon] Processing NODE_10216_length_316_cov_16.220513:1-316 [pilon] NODE_14081_length_243_cov_13.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14081_length_243_cov_13.622951:1-243 [pilon] Processing NODE_7433_length_446_cov_69.929231:1-446 [pilon] NODE_9906_length_330_cov_12.095694:1-330 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 56, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 330 bases (39.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9906_length_330_cov_12.095694:1-330 [pilon] Processing NODE_14627_length_243_cov_9.229508:1-243 [pilon] NODE_9124_length_360_cov_22.368201:1-360 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 143, Coverage: 13, minDepth: 5 [pilon] Confirmed 202 of 360 bases (56.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9124_length_360_cov_22.368201:1-360 [pilon] Processing NODE_3781_length_743_cov_5.176849:1-743 [pilon] NODE_9682_length_339_cov_10.967890:1-339 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 56, Coverage: 9, minDepth: 5 [pilon] Confirmed 223 of 339 bases (65.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9682_length_339_cov_10.967890:1-339 [pilon] Processing NODE_4382_length_673_cov_2.123188:1-673 [pilon] NODE_13108_length_243_cov_21.885246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13108_length_243_cov_21.885246:1-243 [pilon] Processing NODE_15215_length_152_cov_9.000000:1-152 [pilon] NODE_12003_length_246_cov_17.816000:1-246 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 45, Coverage: 6, minDepth: 5 [pilon] Confirmed 158 of 246 bases (64.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12003_length_246_cov_17.816000:1-246 [pilon] NODE_10346_length_312_cov_6.979058:1-312 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 32, Coverage: 5, minDepth: 5 [pilon] Confirmed 197 of 312 bases (63.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10346_length_312_cov_6.979058:1-312 [pilon] Processing NODE_12900_length_243_cov_24.073770:1-243 [pilon] Processing NODE_12772_length_243_cov_25.319672:1-243 [pilon] NODE_9974_length_327_cov_12.985437:1-327 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 52, Coverage: 6, minDepth: 5 [pilon] Confirmed 186 of 327 bases (56.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9974_length_327_cov_12.985437:1-327 [pilon] Processing NODE_5710_length_563_cov_1.095023:1-563 [pilon] NODE_12852_length_243_cov_24.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12852_length_243_cov_24.508197:1-243 [pilon] Processing NODE_2690_length_931_cov_11.362963:1-931 [pilon] NODE_8627_length_387_cov_15.812030:1-387 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 92, Coverage: 11, minDepth: 5 [pilon] Confirmed 243 of 387 bases (62.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8627_length_387_cov_15.812030:1-387 [pilon] Processing NODE_14102_length_243_cov_13.459016:1-243 [pilon] NODE_10851_length_290_cov_28.082840:1-290 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 105, Coverage: 6, minDepth: 5 [pilon] Confirmed 161 of 290 bases (55.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10851_length_290_cov_28.082840:1-290 [pilon] Processing NODE_8099_length_414_cov_0.593857:1-414 [pilon] NODE_11731_length_255_cov_22.253731:1-255 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 70, Coverage: 6, minDepth: 5 [pilon] Confirmed 182 of 255 bases (71.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11731_length_255_cov_22.253731:1-255 [pilon] Processing NODE_9334_length_353_cov_19.750000:1-353 [pilon] NODE_1394_length_1298_cov_21.148683:1-1298 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 578, Coverage: 49, minDepth: 12 [pilon] Confirmed 1165 of 1298 bases (89.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1394_length_1298_cov_21.148683:1-1298 [pilon] Processing NODE_4458_length_665_cov_18.314338:1-665 [pilon] NODE_2802_length_909_cov_1.201777:1-909 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 33, Coverage: 5, minDepth: 5 [pilon] Confirmed 439 of 909 bases (48.29%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2802_length_909_cov_1.201777:1-909 [pilon] Processing NODE_13154_length_243_cov_21.483607:1-243 [pilon] NODE_8100_length_413_cov_79.092466:1-413 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 488, Coverage: 85, minDepth: 21 [pilon] Confirmed 357 of 413 bases (86.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8100_length_413_cov_79.092466:1-413 [pilon] Processing NODE_1163_length_1412_cov_3.219985:1-1412 [pilon] NODE_2118_length_1055_cov_1.167024:1-1055 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 38, Coverage: 5, minDepth: 5 [pilon] Confirmed 490 of 1055 bases (46.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2118_length_1055_cov_1.167024:1-1055 [pilon] Processing NODE_1653_length_1200_cov_1.832252:1-1200 [pilon] NODE_4675_length_645_cov_39.889313:1-645 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 476, Coverage: 61, minDepth: 15 [pilon] Confirmed 570 of 645 bases (88.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4675_length_645_cov_39.889313:1-645 [pilon] Processing NODE_11879_length_249_cov_33.367188:1-249 [pilon] NODE_5038_length_616_cov_4.155556:1-616 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 49, Coverage: 9, minDepth: 5 [pilon] Confirmed 517 of 616 bases (83.93%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5038_length_616_cov_4.155556:1-616 [pilon] Processing NODE_13206_length_243_cov_21.024590:1-243 [pilon] NODE_9422_length_349_cov_12.697368:1-349 log: [pilon] NODE_14549_length_243_cov_9.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14549_length_243_cov_9.918033:1-243 [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 63, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 349 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9422_length_349_cov_12.697368:1-349 [pilon] Processing NODE_14269_length_243_cov_12.073770:1-243 [pilon] Processing NODE_8864_length_374_cov_7.501976:1-374 [pilon] NODE_10829_length_291_cov_20.323529:1-291 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 75, Coverage: 8, minDepth: 5 [pilon] Confirmed 216 of 291 bases (74.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10829_length_291_cov_20.323529:1-291 [pilon] Processing NODE_9137_length_360_cov_15.184100:1-360 [pilon] NODE_5521_length_576_cov_1.573626:1-576 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 35, Coverage: 6, minDepth: 5 [pilon] Confirmed 317 of 576 bases (55.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5521_length_576_cov_1.573626:1-576 [pilon] Processing NODE_12084_length_244_cov_19.430894:1-244 [pilon] NODE_6894_length_477_cov_55.598315:1-477 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 442, Coverage: 77, minDepth: 19 [pilon] Confirmed 417 of 477 bases (87.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6894_length_477_cov_55.598315:1-477 [pilon] Processing NODE_14003_length_243_cov_14.163934:1-243 [pilon] NODE_14627_length_243_cov_9.229508:1-243 log: [pilon] NODE_3781_length_743_cov_5.176849:1-743 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 86, Coverage: 13, minDepth: 5 [pilon] Confirmed 606 of 743 bases (81.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3781_length_743_cov_5.176849:1-743 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_11288_length_273_cov_7.986842:1-273 [pilon] Finished processing NODE_14627_length_243_cov_9.229508:1-243 [pilon] Processing NODE_11043_length_282_cov_10.155280:1-282 [pilon] NODE_2042_length_1074_cov_19.816369:1-1074 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 476, Coverage: 32, minDepth: 8 [pilon] Confirmed 925 of 1074 bases (86.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2042_length_1074_cov_19.816369:1-1074 [pilon] Processing NODE_11032_length_282_cov_17.254658:1-282 [pilon] NODE_7959_length_420_cov_11.745819:1-420 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 86, Coverage: 8, minDepth: 5 [pilon] Confirmed 265 of 420 bases (63.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7959_length_420_cov_11.745819:1-420 [pilon] Processing NODE_14214_length_243_cov_12.500000:1-243 [pilon] NODE_5061_length_614_cov_0.545639:1-614 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 11, Coverage: 2, minDepth: 5 [pilon] Confirmed 102 of 614 bases (16.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5061_length_614_cov_0.545639:1-614 [pilon] Processing NODE_3197_length_833_cov_16.939607:1-833 [pilon] NODE_1185_length_1405_cov_29.504673:1-1405 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 895, Coverage: 70, minDepth: 18 [pilon] Confirmed 1281 of 1405 bases (91.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1185_length_1405_cov_29.504673:1-1405 [pilon] Processing NODE_7655_length_435_cov_10.347134:1-435 [pilon] NODE_10216_length_316_cov_16.220513:1-316 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 71, Coverage: 6, minDepth: 5 [pilon] Confirmed 186 of 316 bases (58.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10216_length_316_cov_16.220513:1-316 [pilon] Processing NODE_3632_length_764_cov_2.502333:1-764 [pilon] NODE_921_length_1544_cov_24.203092:1-1544 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 816, Coverage: 50, minDepth: 13 [pilon] Confirmed 1277 of 1544 bases (82.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_921_length_1544_cov_24.203092:1-1544 [pilon] Processing NODE_9545_length_344_cov_48.766816:1-344 [pilon] NODE_7433_length_446_cov_69.929231:1-446 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 522, Coverage: 86, minDepth: 22 [pilon] Confirmed 388 of 446 bases (87.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7433_length_446_cov_69.929231:1-446 [pilon] Processing NODE_7523_length_442_cov_1.289720:1-442 [pilon] NODE_15215_length_152_cov_9.000000:1-152 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 152 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15215_length_152_cov_9.000000:1-152 [pilon] Processing NODE_404_length_2043_cov_2.442248:1-2043 [pilon] NODE_4458_length_665_cov_18.314338:1-665 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 265, Coverage: 32, minDepth: 8 [pilon] Confirmed 586 of 665 bases (88.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4458_length_665_cov_18.314338:1-665 [pilon] Processing NODE_14368_length_243_cov_11.319672:1-243 [pilon] NODE_4382_length_673_cov_2.123188:1-673 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 45, Coverage: 8, minDepth: 5 [pilon] Confirmed 574 of 673 bases (85.29%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4382_length_673_cov_2.123188:1-673 [pilon] Processing NODE_8750_length_380_cov_18.841699:1-380 [pilon] NODE_5710_length_563_cov_1.095023:1-563 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 140 of 563 bases (24.87%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5710_length_563_cov_1.095023:1-563 [pilon] Processing NODE_7497_length_443_cov_21.096273:1-443 [pilon] NODE_12772_length_243_cov_25.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12772_length_243_cov_25.319672:1-243 [pilon] Processing NODE_13938_length_243_cov_14.598361:1-243 [pilon] NODE_12900_length_243_cov_24.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12900_length_243_cov_24.073770:1-243 [pilon] Processing NODE_1161_length_1413_cov_1.606811:1-1413 [pilon] NODE_2690_length_931_cov_11.362963:1-931 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 236, Coverage: 24, minDepth: 6 [pilon] Confirmed 858 of 931 bases (92.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2690_length_931_cov_11.362963:1-931 [pilon] Processing NODE_11878_length_249_cov_36.992188:1-249 [pilon] NODE_8099_length_414_cov_0.593857:1-414 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 7, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 414 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8099_length_414_cov_0.593857:1-414 [pilon] Processing NODE_6253_length_521_cov_1.280000:1-521 [pilon] NODE_14102_length_243_cov_13.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14102_length_243_cov_13.459016:1-243 [pilon] Processing NODE_4724_length_641_cov_17.769231:1-641 [pilon] NODE_13154_length_243_cov_21.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13154_length_243_cov_21.483607:1-243 [pilon] Processing NODE_8136_length_411_cov_22.696552:1-411 [pilon] NODE_9334_length_353_cov_19.750000:1-353 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 53, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 353 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9334_length_353_cov_19.750000:1-353 [pilon] Processing NODE_12713_length_243_cov_26.057377:1-243 [pilon] NODE_1163_length_1412_cov_3.219985:1-1412 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 105, Coverage: 9, minDepth: 5 [pilon] Confirmed 1000 of 1412 bases (70.82%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1163_length_1412_cov_3.219985:1-1412 [pilon] Processing NODE_9928_length_328_cov_39.734300:1-328 [pilon] NODE_8864_length_374_cov_7.501976:1-374 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 268 of 374 bases (71.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8864_length_374_cov_7.501976:1-374 [pilon] Processing NODE_10331_length_312_cov_16.073298:1-312 [pilon] NODE_13206_length_243_cov_21.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13206_length_243_cov_21.024590:1-243 [pilon] Processing NODE_9689_length_339_cov_8.555046:1-339 [pilon] NODE_11879_length_249_cov_33.367188:1-249 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 86, Coverage: 8, minDepth: 5 [pilon] Confirmed 189 of 249 bases (75.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11879_length_249_cov_33.367188:1-249 [pilon] Processing NODE_9747_length_336_cov_18.186047:1-336 [pilon] NODE_1653_length_1200_cov_1.832252:1-1200 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 613 of 1200 bases (51.08%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1653_length_1200_cov_1.832252:1-1200 [pilon] Processing NODE_15009_length_243_cov_5.319672:1-243 [pilon] NODE_9137_length_360_cov_15.184100:1-360 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 81, Coverage: 4, minDepth: 5 [pilon] Confirmed 206 of 360 bases (57.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9137_length_360_cov_15.184100:1-360 [pilon] Processing NODE_10586_length_302_cov_13.436464:1-302 [pilon] NODE_14003_length_243_cov_14.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14003_length_243_cov_14.163934:1-243 [pilon] Processing NODE_4676_length_645_cov_34.070611:1-645 [pilon] NODE_12084_length_244_cov_19.430894:1-244 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 54, Coverage: 3, minDepth: 5 [pilon] Confirmed 95 of 244 bases (38.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12084_length_244_cov_19.430894:1-244 [pilon] Processing NODE_8089_length_414_cov_11.095563:1-414 [pilon] NODE_11043_length_282_cov_10.155280:1-282 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 37, Coverage: 8, minDepth: 5 [pilon] Confirmed 163 of 282 bases (57.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11043_length_282_cov_10.155280:1-282 [pilon] Processing NODE_9342_length_352_cov_29.519481:1-352 [pilon] NODE_7523_length_442_cov_1.289720:1-442 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 442 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7523_length_442_cov_1.289720:1-442 [pilon] Processing NODE_6560_length_500_cov_0.245383:1-500 [pilon] NODE_14214_length_243_cov_12.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14214_length_243_cov_12.500000:1-243 [pilon] Processing NODE_10266_length_315_cov_7.917526:1-315 [pilon] NODE_11032_length_282_cov_17.254658:1-282 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 60, Coverage: 9, minDepth: 5 [pilon] Confirmed 207 of 282 bases (73.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11032_length_282_cov_17.254658:1-282 [pilon] Processing NODE_13059_length_243_cov_22.311475:1-243 [pilon] NODE_7655_length_435_cov_10.347134:1-435 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 71, Coverage: 13, minDepth: 5 [pilon] Confirmed 320 of 435 bases (73.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7655_length_435_cov_10.347134:1-435 [pilon] Processing NODE_11057_length_281_cov_8.800000:1-281 [pilon] NODE_14269_length_243_cov_12.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14269_length_243_cov_12.073770:1-243 [pilon] Processing NODE_12224_length_243_cov_35.500000:1-243 [pilon] NODE_3197_length_833_cov_16.939607:1-833 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 273, Coverage: 35, minDepth: 9 [pilon] Confirmed 712 of 833 bases (85.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3197_length_833_cov_16.939607:1-833 [pilon] Processing NODE_6733_length_488_cov_1.702997:1-488 [pilon] NODE_11288_length_273_cov_7.986842:1-273 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 27, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11288_length_273_cov_7.986842:1-273 [pilon] Processing NODE_11754_length_255_cov_15.985075:1-255 [pilon] NODE_8750_length_380_cov_18.841699:1-380 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 116, Coverage: 6, minDepth: 5 [pilon] Confirmed 235 of 380 bases (61.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7497_length_443_cov_21.096273:1-443 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 152, Coverage: 29, minDepth: 7 [pilon] Confirmed 359 of 443 bases (81.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7497_length_443_cov_21.096273:1-443 [pilon] Finished processing NODE_8750_length_380_cov_18.841699:1-380 [pilon] Processing NODE_3588_length_771_cov_2.360000:1-771 [pilon] Processing NODE_2252_length_1020_cov_24.679644:1-1020 [pilon] NODE_4724_length_641_cov_17.769231:1-641 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 207, Coverage: 34, minDepth: 9 [pilon] Confirmed 569 of 641 bases (88.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4724_length_641_cov_17.769231:1-641 [pilon] Processing NODE_3627_length_764_cov_34.105754:1-764 [pilon] NODE_9545_length_344_cov_48.766816:1-344 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 253, Coverage: 45, minDepth: 11 [pilon] Confirmed 309 of 344 bases (89.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9545_length_344_cov_48.766816:1-344 [pilon] Processing NODE_11083_length_280_cov_8.830189:1-280 [pilon] NODE_3632_length_764_cov_2.502333:1-764 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 42, Coverage: 7, minDepth: 5 [pilon] Confirmed 430 of 764 bases (56.28%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3632_length_764_cov_2.502333:1-764 [pilon] Processing NODE_14156_length_243_cov_13.049180:1-243 [pilon] NODE_9928_length_328_cov_39.734300:1-328 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 206, Coverage: 27, minDepth: 7 [pilon] Confirmed 295 of 328 bases (89.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9928_length_328_cov_39.734300:1-328 [pilon] Processing NODE_10798_length_294_cov_5.965318:1-294 [pilon] NODE_14368_length_243_cov_11.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14368_length_243_cov_11.319672:1-243 [pilon] Processing NODE_5681_length_564_cov_20.577878:1-564 [pilon] NODE_10586_length_302_cov_13.436464:1-302 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 54, Coverage: 5, minDepth: 5 [pilon] Confirmed 151 of 302 bases (50.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10586_length_302_cov_13.436464:1-302 [pilon] Processing NODE_3099_length_853_cov_28.355191:1-853 [pilon] NODE_1161_length_1413_cov_1.606811:1-1413 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 60, Coverage: 6, minDepth: 5 [pilon] Confirmed 652 of 1413 bases (46.14%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1161_length_1413_cov_1.606811:1-1413 [pilon] Processing NODE_5800_length_555_cov_12.877880:1-555 [pilon] NODE_6253_length_521_cov_1.280000:1-521 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 173 of 521 bases (33.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6253_length_521_cov_1.280000:1-521 [pilon] Processing NODE_1868_length_1122_cov_2.730270:1-1122 [pilon] NODE_404_length_2043_cov_2.442248:1-2043 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 143, Coverage: 9, minDepth: 5 [pilon] Confirmed 1668 of 2043 bases (81.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_404_length_2043_cov_2.442248:1-2043 [pilon] Processing NODE_11174_length_276_cov_28.012903:1-276 [pilon] NODE_9689_length_339_cov_8.555046:1-339 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 49, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 339 bases (38.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9689_length_339_cov_8.555046:1-339 [pilon] Processing NODE_8697_length_382_cov_27.130268:1-382 [pilon] NODE_10331_length_312_cov_16.073298:1-312 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 74, Coverage: 3, minDepth: 5 [pilon] Confirmed 114 of 312 bases (36.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10331_length_312_cov_16.073298:1-312 [pilon] Processing NODE_3556_length_776_cov_53.097710:1-776 [pilon] NODE_13938_length_243_cov_14.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13938_length_243_cov_14.598361:1-243 [pilon] Processing NODE_11683_length_257_cov_12.345588:1-257 [pilon] NODE_9747_length_336_cov_18.186047:1-336 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 79, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 336 bases (38.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9747_length_336_cov_18.186047:1-336 [pilon] Processing NODE_260_length_2307_cov_12.562672:1-2307 [pilon] NODE_12713_length_243_cov_26.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12713_length_243_cov_26.057377:1-243 [pilon] Processing NODE_3299_length_815_cov_14.926513:1-815 [pilon] NODE_15009_length_243_cov_5.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15009_length_243_cov_5.319672:1-243 [pilon] Processing NODE_12527_length_243_cov_28.729508:1-243 [pilon] NODE_9342_length_352_cov_29.519481:1-352 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 135, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 352 bases (35.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9342_length_352_cov_29.519481:1-352 [pilon] Processing NODE_7586_length_438_cov_24.678233:1-438 [pilon] NODE_8089_length_414_cov_11.095563:1-414 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 84, Coverage: 5, minDepth: 5 [pilon] Confirmed 181 of 414 bases (43.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8089_length_414_cov_11.095563:1-414 [pilon] Processing NODE_4145_length_699_cov_15.439446:1-699 [pilon] NODE_11878_length_249_cov_36.992188:1-249 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 95, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 249 bases (52.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11878_length_249_cov_36.992188:1-249 [pilon] Processing NODE_2765_length_915_cov_1.829975:1-915 [pilon] NODE_8136_length_411_cov_22.696552:1-411 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 165, Coverage: 17, minDepth: 5 [pilon] Confirmed 285 of 411 bases (69.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8136_length_411_cov_22.696552:1-411 [pilon] Processing NODE_9944_length_327_cov_61.237864:1-327 [pilon] NODE_13059_length_243_cov_22.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13059_length_243_cov_22.311475:1-243 [pilon] Processing NODE_3842_length_735_cov_16.661238:1-735 [pilon] NODE_11057_length_281_cov_8.800000:1-281 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 33, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 281 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11057_length_281_cov_8.800000:1-281 [pilon] NODE_4676_length_645_cov_34.070611:1-645 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 408, Coverage: 42, minDepth: 11 [pilon] Confirmed 508 of 645 bases (78.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_10394_length_309_cov_16.351064:1-309 [pilon] Finished processing NODE_4676_length_645_cov_34.070611:1-645 [pilon] Processing NODE_7992_length_419_cov_0.620805:1-419 [pilon] NODE_2252_length_1020_cov_24.679644:1-1020 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 528, Coverage: 50, minDepth: 13 [pilon] Confirmed 887 of 1020 bases (86.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2252_length_1020_cov_24.679644:1-1020 [pilon] Processing NODE_5047_length_615_cov_5.831984:1-615 [pilon] NODE_10266_length_315_cov_7.917526:1-315 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10266_length_315_cov_7.917526:1-315 [pilon] Processing NODE_6624_length_495_cov_40.759358:1-495 [pilon] NODE_11754_length_255_cov_15.985075:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 53, Coverage: 4, minDepth: 5 [pilon] Confirmed 109 of 255 bases (42.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11754_length_255_cov_15.985075:1-255 [pilon] Processing NODE_8554_length_390_cov_39.483271:1-390 [pilon] NODE_3627_length_764_cov_34.105754:1-764 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 507, Coverage: 61, minDepth: 15 [pilon] Confirmed 512 of 764 bases (67.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3627_length_764_cov_34.105754:1-764 [pilon] Processing NODE_14814_length_243_cov_7.581967:1-243 [pilon] NODE_12224_length_243_cov_35.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12224_length_243_cov_35.500000:1-243 [pilon] Processing NODE_726_length_1686_cov_3.282428:1-1686 [pilon] NODE_1868_length_1122_cov_2.730270:1-1122 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 74, Coverage: 9, minDepth: 5 [pilon] Confirmed 832 of 1122 bases (74.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1868_length_1122_cov_2.730270:1-1122 [pilon] Processing NODE_4886_length_628_cov_1.366864:1-628 [pilon] NODE_6733_length_488_cov_1.702997:1-488 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 25, Coverage: 6, minDepth: 5 [pilon] Confirmed 271 of 488 bases (55.53%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6733_length_488_cov_1.702997:1-488 [pilon] Processing NODE_13243_length_243_cov_20.696721:1-243 [pilon] NODE_3588_length_771_cov_2.360000:1-771 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 42, Coverage: 7, minDepth: 5 [pilon] Confirmed 420 of 771 bases (54.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3588_length_771_cov_2.360000:1-771 [pilon] Processing NODE_528_length_1888_cov_2.374080:1-1888 [pilon] NODE_3099_length_853_cov_28.355191:1-853 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 520, Coverage: 55, minDepth: 14 [pilon] Confirmed 554 of 853 bases (64.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3099_length_853_cov_28.355191:1-853 [pilon] Processing NODE_9652_length_339_cov_24.169725:1-339 [pilon] NODE_8697_length_382_cov_27.130268:1-382 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 144, Coverage: 17, minDepth: 5 [pilon] Confirmed 262 of 382 bases (68.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8697_length_382_cov_27.130268:1-382 [pilon] Processing NODE_221_length_2431_cov_15.611688:1-2431 [pilon] NODE_6560_length_500_cov_0.245383:1-500 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 5, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 500 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6560_length_500_cov_0.245383:1-500 [pilon] Processing NODE_2712_length_926_cov_18.315528:1-926 [pilon] NODE_5681_length_564_cov_20.577878:1-564 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 219, Coverage: 19, minDepth: 5 [pilon] Confirmed 410 of 564 bases (72.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5681_length_564_cov_20.577878:1-564 [pilon] Processing NODE_2227_length_1026_cov_28.041989:1-1026 [pilon] NODE_11683_length_257_cov_12.345588:1-257 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 257 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11683_length_257_cov_12.345588:1-257 [pilon] Processing NODE_3739_length_749_cov_54.121019:1-749 [pilon] NODE_5800_length_555_cov_12.877880:1-555 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 136, Coverage: 25, minDepth: 6 [pilon] Confirmed 495 of 555 bases (89.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5800_length_555_cov_12.877880:1-555 [pilon] Processing NODE_5011_length_617_cov_58.171371:1-617 [pilon] NODE_11083_length_280_cov_8.830189:1-280 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 28, Coverage: 5, minDepth: 5 [pilon] Confirmed 136 of 280 bases (48.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11083_length_280_cov_8.830189:1-280 [pilon] Processing NODE_10108_length_321_cov_16.195000:1-321 [pilon] NODE_2765_length_915_cov_1.829975:1-915 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 51, Coverage: 7, minDepth: 5 [pilon] Confirmed 595 of 915 bases (65.03%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2765_length_915_cov_1.829975:1-915 [pilon] Processing NODE_871_length_1582_cov_2.072553:1-1582 [pilon] NODE_10798_length_294_cov_5.965318:1-294 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 28, Coverage: 4, minDepth: 5 [pilon] Confirmed 129 of 294 bases (43.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10798_length_294_cov_5.965318:1-294 [pilon] Processing NODE_5341_length_589_cov_27.121795:1-589 [pilon] NODE_3556_length_776_cov_53.097710:1-776 log: [pilon] frags shovill.bam: coverage 102 [pilon] Total Reads: 778, Coverage: 102, minDepth: 26 [pilon] Confirmed 690 of 776 bases (88.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3556_length_776_cov_53.097710:1-776 [pilon] Processing NODE_241_length_2374_cov_13.274301:1-2374 [pilon] NODE_3299_length_815_cov_14.926513:1-815 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 246, Coverage: 38, minDepth: 10 [pilon] Confirmed 609 of 815 bases (74.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3299_length_815_cov_14.926513:1-815 [pilon] Processing NODE_7849_length_425_cov_8.256579:1-425 [pilon] NODE_260_length_2307_cov_12.562672:1-2307 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 717, Coverage: 35, minDepth: 9 [pilon] Confirmed 1699 of 2307 bases (73.65%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_260_length_2307_cov_12.562672:1-2307 [pilon] Processing NODE_509_length_1908_cov_1.691662:1-1908 [pilon] NODE_12527_length_243_cov_28.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12527_length_243_cov_28.729508:1-243 [pilon] NODE_14156_length_243_cov_13.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14156_length_243_cov_13.049180:1-243 [pilon] Processing NODE_3667_length_759_cov_20.681818:1-759 [pilon] Processing NODE_11599_length_260_cov_30.100719:1-260 [pilon] NODE_9944_length_327_cov_61.237864:1-327 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 289, Coverage: 39, minDepth: 10 [pilon] Confirmed 295 of 327 bases (90.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9944_length_327_cov_61.237864:1-327 [pilon] Processing NODE_1258_length_1359_cov_21.138126:1-1359 [pilon] NODE_5047_length_615_cov_5.831984:1-615 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 84, Coverage: 7, minDepth: 5 [pilon] Confirmed 308 of 615 bases (50.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5047_length_615_cov_5.831984:1-615 [pilon] Processing NODE_192_length_2533_cov_16.427861:1-2533 [pilon] NODE_4145_length_699_cov_15.439446:1-699 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 192, Coverage: 28, minDepth: 7 [pilon] Confirmed 551 of 699 bases (78.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4145_length_699_cov_15.439446:1-699 [pilon] Processing NODE_933_length_1539_cov_16.755994:1-1539 [pilon] NODE_14814_length_243_cov_7.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14814_length_243_cov_7.581967:1-243 [pilon] Processing NODE_14083_length_243_cov_13.614754:1-243 [pilon] NODE_7586_length_438_cov_24.678233:1-438 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 173, Coverage: 30, minDepth: 8 [pilon] Confirmed 402 of 438 bases (91.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7586_length_438_cov_24.678233:1-438 [pilon] Processing NODE_5066_length_613_cov_22.416667:1-613 [pilon] NODE_11174_length_276_cov_28.012903:1-276 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 86, Coverage: 6, minDepth: 5 [pilon] Confirmed 147 of 276 bases (53.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11174_length_276_cov_28.012903:1-276 [pilon] Processing NODE_13181_length_243_cov_21.270492:1-243 [pilon] NODE_3842_length_735_cov_16.661238:1-735 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 254, Coverage: 21, minDepth: 5 [pilon] Confirmed 629 of 735 bases (85.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3842_length_735_cov_16.661238:1-735 [pilon] Processing NODE_11411_length_267_cov_15.171233:1-267 [pilon] NODE_7992_length_419_cov_0.620805:1-419 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 419 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7992_length_419_cov_0.620805:1-419 [pilon] Processing NODE_9080_length_363_cov_12.623967:1-363 [pilon] NODE_10394_length_309_cov_16.351064:1-309 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 67, Coverage: 6, minDepth: 5 [pilon] Confirmed 221 of 309 bases (71.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10394_length_309_cov_16.351064:1-309 [pilon] Processing NODE_10310_length_312_cov_31.963351:1-312 [pilon] NODE_13243_length_243_cov_20.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13243_length_243_cov_20.696721:1-243 [pilon] Processing NODE_7950_length_420_cov_18.565217:1-420 [pilon] NODE_6624_length_495_cov_40.759358:1-495 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 345, Coverage: 56, minDepth: 14 [pilon] Confirmed 384 of 495 bases (77.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6624_length_495_cov_40.759358:1-495 [pilon] Processing NODE_14714_length_243_cov_8.467213:1-243 [pilon] NODE_8554_length_390_cov_39.483271:1-390 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 256, Coverage: 41, minDepth: 10 [pilon] Confirmed 349 of 390 bases (89.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8554_length_390_cov_39.483271:1-390 [pilon] Processing NODE_14786_length_243_cov_7.819672:1-243 [pilon] NODE_726_length_1686_cov_3.282428:1-1686 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 133, Coverage: 10, minDepth: 5 [pilon] Confirmed 1158 of 1686 bases (68.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_726_length_1686_cov_3.282428:1-1686 [pilon] Processing NODE_8343_length_403_cov_0.173759:1-403 [pilon] NODE_4886_length_628_cov_1.366864:1-628 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 19, Coverage: 3, minDepth: 5 [pilon] Confirmed 159 of 628 bases (25.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4886_length_628_cov_1.366864:1-628 [pilon] Processing NODE_6092_length_533_cov_0.980583:1-533 [pilon] NODE_9652_length_339_cov_24.169725:1-339 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 118, Coverage: 13, minDepth: 5 [pilon] Confirmed 255 of 339 bases (75.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9652_length_339_cov_24.169725:1-339 [pilon] Processing NODE_4230_length_689_cov_56.623239:1-689 [pilon] NODE_528_length_1888_cov_2.374080:1-1888 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 140, Coverage: 9, minDepth: 5 [pilon] Confirmed 1642 of 1888 bases (86.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_528_length_1888_cov_2.374080:1-1888 [pilon] Processing NODE_6081_length_533_cov_41.233010:1-533 [pilon] NODE_2712_length_926_cov_18.315528:1-926 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 415, Coverage: 57, minDepth: 14 [pilon] Confirmed 673 of 926 bases (72.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2712_length_926_cov_18.315528:1-926 [pilon] Processing NODE_8896_length_372_cov_18.043825:1-372 [pilon] NODE_2227_length_1026_cov_28.041989:1-1026 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 683, Coverage: 44, minDepth: 11 [pilon] Confirmed 645 of 1026 bases (62.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2227_length_1026_cov_28.041989:1-1026 [pilon] Processing NODE_2816_length_907_cov_0.989822:1-907 [pilon] NODE_871_length_1582_cov_2.072553:1-1582 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 109, Coverage: 8, minDepth: 5 [pilon] Confirmed 1201 of 1582 bases (75.92%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_871_length_1582_cov_2.072553:1-1582 [pilon] Processing NODE_9075_length_363_cov_15.429752:1-363 [pilon] NODE_3739_length_749_cov_54.121019:1-749 log: [pilon] frags shovill.bam: coverage 100 [pilon] Total Reads: 775, Coverage: 100, minDepth: 25 [pilon] Confirmed 562 of 749 bases (75.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3739_length_749_cov_54.121019:1-749 [pilon] Processing NODE_6597_length_497_cov_43.465426:1-497 [pilon] NODE_14083_length_243_cov_13.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_221_length_2431_cov_15.611688:1-2431 log: [pilon] NODE_7849_length_425_cov_8.256579:1-425 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 54, Coverage: 5, minDepth: 5 [pilon] Confirmed 173 of 425 bases (40.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7849_length_425_cov_8.256579:1-425 [pilon] Finished processing NODE_14083_length_243_cov_13.614754:1-243 [pilon] Processing NODE_5412_length_583_cov_8.523810:1-583 [pilon] Processing NODE_8553_length_391_cov_12.422222:1-391 [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 829, Coverage: 44, minDepth: 11 [pilon] Confirmed 2171 of 2431 bases (89.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_221_length_2431_cov_15.611688:1-2431 [pilon] Processing NODE_6608_length_497_cov_1.888298:1-497 [pilon] NODE_5011_length_617_cov_58.171371:1-617 log: [pilon] frags shovill.bam: coverage 92 [pilon] Total Reads: 691, Coverage: 92, minDepth: 23 [pilon] Confirmed 415 of 617 bases (67.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5011_length_617_cov_58.171371:1-617 [pilon] Processing NODE_7770_length_429_cov_10.678571:1-429 [pilon] NODE_10108_length_321_cov_16.195000:1-321 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 60, Coverage: 8, minDepth: 5 [pilon] Confirmed 206 of 321 bases (64.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10108_length_321_cov_16.195000:1-321 [pilon] Processing NODE_13969_length_243_cov_14.336066:1-243 [pilon] NODE_5341_length_589_cov_27.121795:1-589 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 307, Coverage: 45, minDepth: 11 [pilon] Confirmed 444 of 589 bases (75.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5341_length_589_cov_27.121795:1-589 [pilon] Processing NODE_2890_length_895_cov_1.997416:1-895 [pilon] NODE_192_length_2533_cov_16.427861:1-2533 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 997, Coverage: 36, minDepth: 9 [pilon] Confirmed 2165 of 2533 bases (85.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_192_length_2533_cov_16.427861:1-2533 [pilon] Processing NODE_7099_length_465_cov_13.738372:1-465 [pilon] NODE_241_length_2374_cov_13.274301:1-2374 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 809, Coverage: 43, minDepth: 11 [pilon] Confirmed 2071 of 2374 bases (87.24%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_241_length_2374_cov_13.274301:1-2374 [pilon] Processing NODE_3209_length_831_cov_26.161972:1-831 [pilon] NODE_509_length_1908_cov_1.691662:1-1908 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 92, Coverage: 6, minDepth: 5 [pilon] Confirmed 1278 of 1908 bases (66.98%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_509_length_1908_cov_1.691662:1-1908 [pilon] Processing NODE_10786_length_294_cov_13.612717:1-294 [pilon] NODE_11599_length_260_cov_30.100719:1-260 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 82, Coverage: 8, minDepth: 5 [pilon] Confirmed 213 of 260 bases (81.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11599_length_260_cov_30.100719:1-260 [pilon] Processing NODE_14632_length_243_cov_9.172131:1-243 [pilon] NODE_7950_length_420_cov_18.565217:1-420 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 141, Coverage: 26, minDepth: 7 [pilon] Confirmed 382 of 420 bases (90.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7950_length_420_cov_18.565217:1-420 [pilon] Processing NODE_6383_length_512_cov_0.749361:1-512 [pilon] NODE_3667_length_759_cov_20.681818:1-759 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 449, Coverage: 51, minDepth: 13 [pilon] Confirmed 596 of 759 bases (78.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3667_length_759_cov_20.681818:1-759 [pilon] Processing NODE_1095_length_1443_cov_13.866868:1-1443 [pilon] NODE_933_length_1539_cov_16.755994:1-1539 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 527, Coverage: 37, minDepth: 9 [pilon] Confirmed 1319 of 1539 bases (85.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_933_length_1539_cov_16.755994:1-1539 [pilon] Processing NODE_9061_length_363_cov_25.078512:1-363 [pilon] NODE_5066_length_613_cov_22.416667:1-613 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 231, Coverage: 36, minDepth: 9 [pilon] Confirmed 450 of 613 bases (73.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5066_length_613_cov_22.416667:1-613 [pilon] Processing NODE_6978_length_473_cov_8.255682:1-473 [pilon] NODE_1258_length_1359_cov_21.138126:1-1359 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 499, Coverage: 24, minDepth: 6 [pilon] Confirmed 877 of 1359 bases (64.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1258_length_1359_cov_21.138126:1-1359 [pilon] Processing NODE_14128_length_243_cov_13.286885:1-243 [pilon] NODE_13181_length_243_cov_21.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13181_length_243_cov_21.270492:1-243 [pilon] Processing NODE_10423_length_307_cov_28.989247:1-307 [pilon] NODE_11411_length_267_cov_15.171233:1-267 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 35, Coverage: 2, minDepth: 5 [pilon] Confirmed 24 of 267 bases (8.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11411_length_267_cov_15.171233:1-267 [pilon] Processing NODE_590_length_1821_cov_3.430588:1-1821 [pilon] NODE_9080_length_363_cov_12.623967:1-363 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 45, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 363 bases (35.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9080_length_363_cov_12.623967:1-363 [pilon] Processing NODE_7090_length_465_cov_26.255814:1-465 [pilon] NODE_10310_length_312_cov_31.963351:1-312 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 139, Coverage: 20, minDepth: 5 [pilon] Confirmed 285 of 312 bases (91.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10310_length_312_cov_31.963351:1-312 [pilon] Processing NODE_14389_length_243_cov_11.147541:1-243 [pilon] NODE_8343_length_403_cov_0.173759:1-403 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 403 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8343_length_403_cov_0.173759:1-403 [pilon] Processing NODE_3607_length_767_cov_22.164087:1-767 [pilon] NODE_14714_length_243_cov_8.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14714_length_243_cov_8.467213:1-243 [pilon] Processing NODE_4991_length_619_cov_10.977912:1-619 [pilon] NODE_5412_length_583_cov_8.523810:1-583 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 98, Coverage: 11, minDepth: 5 [pilon] Confirmed 449 of 583 bases (77.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5412_length_583_cov_8.523810:1-583 [pilon] Processing NODE_9145_length_360_cov_12.815900:1-360 [pilon] NODE_14786_length_243_cov_7.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14786_length_243_cov_7.819672:1-243 [pilon] Processing NODE_3921_length_725_cov_6.359272:1-725 [pilon] NODE_7099_length_465_cov_13.738372:1-465 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 107, Coverage: 16, minDepth: 5 [pilon] Confirmed 268 of 465 bases (57.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7099_length_465_cov_13.738372:1-465 [pilon] Processing NODE_5501_length_577_cov_4.739035:1-577 [pilon] NODE_6092_length_533_cov_0.980583:1-533 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 147 of 533 bases (27.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6092_length_533_cov_0.980583:1-533 [pilon] Processing NODE_7812_length_426_cov_31.747541:1-426 [pilon] NODE_6081_length_533_cov_41.233010:1-533 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 384, Coverage: 62, minDepth: 16 [pilon] Confirmed 453 of 533 bases (84.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6081_length_533_cov_41.233010:1-533 [pilon] Processing NODE_8454_length_396_cov_20.058182:1-396 [pilon] NODE_4230_length_689_cov_56.623239:1-689 log: [pilon] frags shovill.bam: coverage 105 [pilon] Total Reads: 726, Coverage: 105, minDepth: 26 [pilon] Confirmed 595 of 689 bases (86.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4230_length_689_cov_56.623239:1-689 [pilon] Processing NODE_5556_length_574_cov_1.035320:1-574 [pilon] NODE_2816_length_907_cov_0.989822:1-907 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 34, Coverage: 5, minDepth: 5 [pilon] Confirmed 361 of 907 bases (39.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2816_length_907_cov_0.989822:1-907 [pilon] Processing NODE_3287_length_817_cov_6.008621:1-817 [pilon] NODE_8896_length_372_cov_18.043825:1-372 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 96, Coverage: 17, minDepth: 5 [pilon] Confirmed 297 of 372 bases (79.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8896_length_372_cov_18.043825:1-372 [pilon] Processing NODE_14139_length_243_cov_13.204918:1-243 [pilon] NODE_6383_length_512_cov_0.749361:1-512 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 11 of 512 bases (2.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6383_length_512_cov_0.749361:1-512 [pilon] Processing NODE_12396_length_243_cov_31.065574:1-243 [pilon] NODE_9075_length_363_cov_15.429752:1-363 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 75, Coverage: 10, minDepth: 5 [pilon] Confirmed 263 of 363 bases (72.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9075_length_363_cov_15.429752:1-363 [pilon] Processing NODE_13807_length_243_cov_15.573770:1-243 [pilon] NODE_6608_length_497_cov_1.888298:1-497 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 211 of 497 bases (42.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6608_length_497_cov_1.888298:1-497 [pilon] Processing NODE_254_length_2324_cov_21.735815:1-2324 [pilon] NODE_8553_length_391_cov_12.422222:1-391 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 93, Coverage: 9, minDepth: 5 [pilon] Confirmed 207 of 391 bases (52.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8553_length_391_cov_12.422222:1-391 [pilon] Processing NODE_7436_length_446_cov_46.950769:1-446 [pilon] NODE_7770_length_429_cov_10.678571:1-429 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 74, Coverage: 4, minDepth: 5 [pilon] Confirmed 204 of 429 bases (47.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7770_length_429_cov_10.678571:1-429 [pilon] Processing NODE_4139_length_700_cov_1.314335:1-700 [pilon] NODE_6597_length_497_cov_43.465426:1-497 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 394, Coverage: 67, minDepth: 17 [pilon] Confirmed 453 of 497 bases (91.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6597_length_497_cov_43.465426:1-497 [pilon] Processing NODE_13382_length_243_cov_19.532787:1-243 [pilon] NODE_13969_length_243_cov_14.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13969_length_243_cov_14.336066:1-243 [pilon] Processing NODE_69_length_3317_cov_21.759074:1-3317 [pilon] NODE_2890_length_895_cov_1.997416:1-895 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 36, Coverage: 5, minDepth: 5 [pilon] Confirmed 358 of 895 bases (40.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2890_length_895_cov_1.997416:1-895 [pilon] Processing NODE_12487_length_243_cov_29.352459:1-243 [pilon] NODE_3209_length_831_cov_26.161972:1-831 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 439, Coverage: 41, minDepth: 10 [pilon] Confirmed 667 of 831 bases (80.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3209_length_831_cov_26.161972:1-831 [pilon] Processing NODE_14928_length_243_cov_6.409836:1-243 [pilon] NODE_10786_length_294_cov_13.612717:1-294 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 153 of 294 bases (52.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10786_length_294_cov_13.612717:1-294 [pilon] Processing NODE_9161_length_359_cov_20.701681:1-359 [pilon] NODE_14632_length_243_cov_9.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14632_length_243_cov_9.172131:1-243 [pilon] Processing NODE_13689_length_243_cov_16.483607:1-243 [pilon] NODE_9061_length_363_cov_25.078512:1-363 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 97, Coverage: 2, minDepth: 5 [pilon] Confirmed 120 of 363 bases (33.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9061_length_363_cov_25.078512:1-363 [pilon] Processing NODE_10311_length_312_cov_27.235602:1-312 [pilon] NODE_1095_length_1443_cov_13.866868:1-1443 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 568, Coverage: 47, minDepth: 12 [pilon] Confirmed 941 of 1443 bases (65.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1095_length_1443_cov_13.866868:1-1443 [pilon] Processing NODE_11258_length_273_cov_19.190789:1-273 [pilon] NODE_14128_length_243_cov_13.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14128_length_243_cov_13.286885:1-243 [pilon] Processing NODE_11890_length_249_cov_23.335938:1-249 [pilon] NODE_6978_length_473_cov_8.255682:1-473 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 85, Coverage: 11, minDepth: 5 [pilon] Confirmed 258 of 473 bases (54.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6978_length_473_cov_8.255682:1-473 [pilon] Processing NODE_4354_length_675_cov_18.658845:1-675 [pilon] NODE_9145_length_360_cov_12.815900:1-360 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 360 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9145_length_360_cov_12.815900:1-360 [pilon] Processing NODE_13574_length_243_cov_17.721311:1-243 [pilon] NODE_10423_length_307_cov_28.989247:1-307 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 113, Coverage: 6, minDepth: 5 [pilon] Confirmed 150 of 307 bases (48.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10423_length_307_cov_28.989247:1-307 [pilon] Processing NODE_862_length_1587_cov_30.674625:1-1587 [pilon] NODE_5501_length_577_cov_4.739035:1-577 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 75, Coverage: 6, minDepth: 5 [pilon] Confirmed 385 of 577 bases (66.72%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5501_length_577_cov_4.739035:1-577 [pilon] Processing NODE_4980_length_620_cov_4.258517:1-620 [pilon] NODE_7090_length_465_cov_26.255814:1-465 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 213, Coverage: 11, minDepth: 5 [pilon] Confirmed 289 of 465 bases (62.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7090_length_465_cov_26.255814:1-465 [pilon] Processing NODE_10775_length_294_cov_19.497110:1-294 [pilon] NODE_590_length_1821_cov_3.430588:1-1821 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 154, Coverage: 11, minDepth: 5 [pilon] Confirmed 1447 of 1821 bases (79.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_590_length_1821_cov_3.430588:1-1821 [pilon] Processing NODE_4261_length_687_cov_2.420495:1-687 [pilon] NODE_14389_length_243_cov_11.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14389_length_243_cov_11.147541:1-243 [pilon] Processing NODE_3357_length_803_cov_34.205279:1-803 [pilon] NODE_12396_length_243_cov_31.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12396_length_243_cov_31.065574:1-243 [pilon] Processing NODE_991_length_1503_cov_1.924023:1-1503 [pilon] NODE_4991_length_619_cov_10.977912:1-619 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 140, Coverage: 21, minDepth: 5 [pilon] Confirmed 542 of 619 bases (87.56%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4991_length_619_cov_10.977912:1-619 [pilon] Processing NODE_14340_length_243_cov_11.532787:1-243 [pilon] NODE_3607_length_767_cov_22.164087:1-767 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 332, Coverage: 38, minDepth: 10 [pilon] Confirmed 706 of 767 bases (92.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3607_length_767_cov_22.164087:1-767 [pilon] Processing NODE_456_length_1967_cov_24.815818:1-1967 [pilon] NODE_3921_length_725_cov_6.359272:1-725 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 96, Coverage: 17, minDepth: 5 [pilon] Confirmed 590 of 725 bases (81.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3921_length_725_cov_6.359272:1-725 [pilon] Processing NODE_7767_length_429_cov_11.740260:1-429 [pilon] NODE_7812_length_426_cov_31.747541:1-426 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 224, Coverage: 28, minDepth: 7 [pilon] Confirmed 351 of 426 bases (82.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7812_length_426_cov_31.747541:1-426 [pilon] Processing NODE_7066_length_467_cov_5.089595:1-467 [pilon] NODE_3287_length_817_cov_6.008621:1-817 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 113, Coverage: 8, minDepth: 5 [pilon] Confirmed 435 of 817 bases (53.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3287_length_817_cov_6.008621:1-817 [pilon] Processing NODE_5627_length_568_cov_40.472036:1-568 [pilon] NODE_8454_length_396_cov_20.058182:1-396 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 127, Coverage: 16, minDepth: 5 [pilon] Confirmed 291 of 396 bases (73.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8454_length_396_cov_20.058182:1-396 [pilon] Processing NODE_14266_length_243_cov_12.090164:1-243 [pilon] NODE_13807_length_243_cov_15.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13807_length_243_cov_15.573770:1-243 [pilon] Processing NODE_10691_length_298_cov_20.350282:1-298 [pilon] NODE_5556_length_574_cov_1.035320:1-574 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 258 of 574 bases (44.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5556_length_574_cov_1.035320:1-574 [pilon] Processing NODE_14764_length_243_cov_8.000000:1-243 [pilon] NODE_14139_length_243_cov_13.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14139_length_243_cov_13.204918:1-243 [pilon] Processing NODE_4394_length_672_cov_2.439201:1-672 [pilon] NODE_13574_length_243_cov_17.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13574_length_243_cov_17.721311:1-243 [pilon] Processing NODE_5849_length_552_cov_0.621810:1-552 [pilon] NODE_7436_length_446_cov_46.950769:1-446 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 356, Coverage: 66, minDepth: 17 [pilon] Confirmed 399 of 446 bases (89.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7436_length_446_cov_46.950769:1-446 [pilon] Processing NODE_11146_length_278_cov_9.968153:1-278 [pilon] NODE_12487_length_243_cov_29.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12487_length_243_cov_29.352459:1-243 [pilon] Processing NODE_4102_length_705_cov_0.395548:1-705 [pilon] NODE_14928_length_243_cov_6.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14928_length_243_cov_6.409836:1-243 [pilon] Processing NODE_2948_length_882_cov_2.191853:1-882 [pilon] NODE_13382_length_243_cov_19.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13382_length_243_cov_19.532787:1-243 [pilon] Processing NODE_14028_length_243_cov_13.991803:1-243 [pilon] NODE_4139_length_700_cov_1.314335:1-700 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 255 of 700 bases (36.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4139_length_700_cov_1.314335:1-700 [pilon] Processing NODE_13271_length_243_cov_20.401639:1-243 [pilon] NODE_4980_length_620_cov_4.258517:1-620 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 177, Coverage: 30, minDepth: 8 [pilon] Confirmed 430 of 620 bases (69.35%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4980_length_620_cov_4.258517:1-620 [pilon] Processing NODE_6158_length_528_cov_1.144963:1-528 [pilon] NODE_9161_length_359_cov_20.701681:1-359 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 123, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 359 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9161_length_359_cov_20.701681:1-359 [pilon] Processing NODE_14683_length_243_cov_8.713115:1-243 [pilon] NODE_254_length_2324_cov_21.735815:1-2324 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 1115, Coverage: 62, minDepth: 16 [pilon] Confirmed 2051 of 2324 bases (88.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_254_length_2324_cov_21.735815:1-2324 [pilon] Processing NODE_4684_length_645_cov_1.124046:1-645 [pilon] NODE_13689_length_243_cov_16.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13689_length_243_cov_16.483607:1-243 [pilon] Processing NODE_7544_length_441_cov_18.484375:1-441 [pilon] NODE_10311_length_312_cov_27.235602:1-312 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 95, Coverage: 7, minDepth: 5 [pilon] Confirmed 171 of 312 bases (54.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10311_length_312_cov_27.235602:1-312 [pilon] Processing NODE_8337_length_403_cov_1.010638:1-403 [pilon] NODE_11890_length_249_cov_23.335938:1-249 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 72, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 249 bases (52.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11890_length_249_cov_23.335938:1-249 [pilon] Processing NODE_14961_length_243_cov_5.975410:1-243 [pilon] NODE_69_length_3317_cov_21.759074:1-3317 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 1673, Coverage: 56, minDepth: 14 [pilon] Confirmed 3045 of 3317 bases (91.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_69_length_3317_cov_21.759074:1-3317 [pilon] Processing NODE_11488_length_264_cov_14.377622:1-264 [pilon] NODE_11258_length_273_cov_19.190789:1-273 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 67, Coverage: 13, minDepth: 5 [pilon] Confirmed 246 of 273 bases (90.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11258_length_273_cov_19.190789:1-273 [pilon] Processing NODE_12024_length_246_cov_11.648000:1-246 [pilon] NODE_991_length_1503_cov_1.924023:1-1503 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 79, Coverage: 7, minDepth: 5 [pilon] Confirmed 1058 of 1503 bases (70.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_991_length_1503_cov_1.924023:1-1503 [pilon] Processing NODE_12031_length_246_cov_10.424000:1-246 [pilon] NODE_4354_length_675_cov_18.658845:1-675 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 244, Coverage: 32, minDepth: 8 [pilon] Confirmed 584 of 675 bases (86.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4354_length_675_cov_18.658845:1-675 [pilon] Processing NODE_4958_length_622_cov_2.055888:1-622 [pilon] NODE_10775_length_294_cov_19.497110:1-294 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 68, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 294 bases (44.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10775_length_294_cov_19.497110:1-294 [pilon] Processing NODE_3551_length_777_cov_17.760671:1-777 [pilon] NODE_862_length_1587_cov_30.674625:1-1587 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 1147, Coverage: 59, minDepth: 15 [pilon] Confirmed 1247 of 1587 bases (78.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_862_length_1587_cov_30.674625:1-1587 [pilon] Processing NODE_14433_length_243_cov_10.786885:1-243 [pilon] NODE_4261_length_687_cov_2.420495:1-687 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 45, Coverage: 8, minDepth: 5 [pilon] Confirmed 529 of 687 bases (77.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4261_length_687_cov_2.420495:1-687 [pilon] Processing NODE_9185_length_357_cov_35.953390:1-357 [pilon] NODE_3357_length_803_cov_34.205279:1-803 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 565, Coverage: 79, minDepth: 20 [pilon] Confirmed 677 of 803 bases (84.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3357_length_803_cov_34.205279:1-803 [pilon] Processing NODE_7537_length_441_cov_21.081250:1-441 [pilon] NODE_14266_length_243_cov_12.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14266_length_243_cov_12.090164:1-243 [pilon] Processing NODE_555_length_1855_cov_15.597463:1-1855 [pilon] NODE_14340_length_243_cov_11.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14340_length_243_cov_11.532787:1-243 [pilon] Processing NODE_3858_length_733_cov_2.978758:1-733 [pilon] NODE_456_length_1967_cov_24.815818:1-1967 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 1198, Coverage: 34, minDepth: 9 [pilon] Confirmed 1758 of 1967 bases (89.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_456_length_1967_cov_24.815818:1-1967 [pilon] Processing NODE_11625_length_258_cov_25.839416:1-258 [pilon] NODE_5849_length_552_cov_0.621810:1-552 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 552 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5849_length_552_cov_0.621810:1-552 [pilon] Processing NODE_3176_length_835_cov_20.299720:1-835 [pilon] NODE_7767_length_429_cov_11.740260:1-429 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 96, Coverage: 9, minDepth: 5 [pilon] Confirmed 220 of 429 bases (51.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7767_length_429_cov_11.740260:1-429 [pilon] Processing NODE_11343_length_270_cov_16.308725:1-270 [pilon] NODE_14764_length_243_cov_8.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14764_length_243_cov_8.000000:1-243 [pilon] Processing NODE_14466_length_243_cov_10.532787:1-243 [pilon] NODE_5627_length_568_cov_40.472036:1-568 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 448, Coverage: 53, minDepth: 13 [pilon] Confirmed 488 of 568 bases (85.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5627_length_568_cov_40.472036:1-568 [pilon] Processing NODE_14426_length_243_cov_10.860656:1-243 [pilon] NODE_7066_length_467_cov_5.089595:1-467 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 52, Coverage: 3, minDepth: 5 [pilon] Confirmed 89 of 467 bases (19.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7066_length_467_cov_5.089595:1-467 [pilon] Processing NODE_5468_length_579_cov_27.325328:1-579 [pilon] NODE_10691_length_298_cov_20.350282:1-298 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 80, Coverage: 11, minDepth: 5 [pilon] Confirmed 237 of 298 bases (79.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10691_length_298_cov_20.350282:1-298 [pilon] Processing NODE_616_length_1788_cov_12.145171:1-1788 [pilon] NODE_4394_length_672_cov_2.439201:1-672 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 349 of 672 bases (51.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4394_length_672_cov_2.439201:1-672 [pilon] Processing NODE_6528_length_501_cov_32.142105:1-501 [pilon] NODE_14028_length_243_cov_13.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14028_length_243_cov_13.991803:1-243 [pilon] Processing NODE_4889_length_627_cov_20.029644:1-627 [pilon] NODE_14683_length_243_cov_8.713115:1-243 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 20, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14683_length_243_cov_8.713115:1-243 [pilon] Processing NODE_8712_length_381_cov_31.492308:1-381 [pilon] NODE_14961_length_243_cov_5.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14961_length_243_cov_5.975410:1-243 [pilon] Processing NODE_9238_length_356_cov_42.600000:1-356 [pilon] NODE_11146_length_278_cov_9.968153:1-278 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 36, Coverage: 3, minDepth: 5 [pilon] Confirmed 70 of 278 bases (25.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11146_length_278_cov_9.968153:1-278 [pilon] Processing NODE_10451_length_306_cov_18.983784:1-306 [pilon] NODE_2948_length_882_cov_2.191853:1-882 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 53, Coverage: 8, minDepth: 5 [pilon] Confirmed 594 of 882 bases (67.35%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2948_length_882_cov_2.191853:1-882 [pilon] Processing NODE_4616_length_651_cov_24.662264:1-651 [pilon] NODE_13271_length_243_cov_20.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13271_length_243_cov_20.401639:1-243 [pilon] Processing NODE_9725_length_336_cov_48.479070:1-336 [pilon] NODE_6158_length_528_cov_1.144963:1-528 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 15, Coverage: 4, minDepth: 5 [pilon] Confirmed 255 of 528 bases (48.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6158_length_528_cov_1.144963:1-528 [pilon] Processing NODE_11581_length_261_cov_16.350000:1-261 [pilon] NODE_4102_length_705_cov_0.395548:1-705 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 15, Coverage: 2, minDepth: 5 [pilon] Confirmed 60 of 705 bases (8.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4102_length_705_cov_0.395548:1-705 [pilon] Processing NODE_9425_length_349_cov_9.587719:1-349 [pilon] NODE_4684_length_645_cov_1.124046:1-645 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 19, Coverage: 4, minDepth: 5 [pilon] Confirmed 228 of 645 bases (35.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4684_length_645_cov_1.124046:1-645 [pilon] Processing NODE_14313_length_243_cov_11.770492:1-243 [pilon] NODE_8337_length_403_cov_1.010638:1-403 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 217 of 403 bases (53.85%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8337_length_403_cov_1.010638:1-403 [pilon] Processing NODE_2602_length_945_cov_12.797330:1-945 [pilon] NODE_7544_length_441_cov_18.484375:1-441 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 139, Coverage: 15, minDepth: 5 [pilon] Confirmed 398 of 441 bases (90.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7544_length_441_cov_18.484375:1-441 [pilon] Processing NODE_5147_length_606_cov_14.292784:1-606 [pilon] NODE_12031_length_246_cov_10.424000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 33, Coverage: 3, minDepth: 5 [pilon] Confirmed 67 of 246 bases (27.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12031_length_246_cov_10.424000:1-246 [pilon] Processing NODE_11918_length_249_cov_12.750000:1-249 [pilon] NODE_555_length_1855_cov_15.597463:1-1855 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 614, Coverage: 43, minDepth: 11 [pilon] Confirmed 1545 of 1855 bases (83.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_555_length_1855_cov_15.597463:1-1855 [pilon] NODE_12024_length_246_cov_11.648000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 35, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_11860_length_251_cov_15.446154:1-251 [pilon] Finished processing NODE_12024_length_246_cov_11.648000:1-246 [pilon] Processing NODE_14519_length_243_cov_10.155738:1-243 [pilon] NODE_11488_length_264_cov_14.377622:1-264 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 45, Coverage: 5, minDepth: 5 [pilon] Confirmed 185 of 264 bases (70.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11488_length_264_cov_14.377622:1-264 [pilon] Processing NODE_12703_length_243_cov_26.131148:1-243 [pilon] NODE_3551_length_777_cov_17.760671:1-777 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 261, Coverage: 21, minDepth: 5 [pilon] Confirmed 578 of 777 bases (74.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3551_length_777_cov_17.760671:1-777 [pilon] Processing NODE_8356_length_402_cov_20.316726:1-402 [pilon] NODE_4958_length_622_cov_2.055888:1-622 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 381 of 622 bases (61.25%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4958_length_622_cov_2.055888:1-622 [pilon] Processing NODE_7256_length_457_cov_0.541667:1-457 [pilon] NODE_14433_length_243_cov_10.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14433_length_243_cov_10.786885:1-243 [pilon] Processing NODE_7187_length_460_cov_31.029499:1-460 [pilon] NODE_9185_length_357_cov_35.953390:1-357 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 151, Coverage: 6, minDepth: 5 [pilon] Confirmed 144 of 357 bases (40.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9185_length_357_cov_35.953390:1-357 [pilon] Processing NODE_7171_length_461_cov_16.823529:1-461 [pilon] NODE_3858_length_733_cov_2.978758:1-733 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 42, Coverage: 7, minDepth: 5 [pilon] Confirmed 377 of 733 bases (51.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3858_length_733_cov_2.978758:1-733 [pilon] Processing NODE_11807_length_252_cov_25.748092:1-252 [pilon] NODE_616_length_1788_cov_12.145171:1-1788 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 475, Coverage: 34, minDepth: 9 [pilon] Confirmed 1496 of 1788 bases (83.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_616_length_1788_cov_12.145171:1-1788 [pilon] Processing NODE_4073_length_708_cov_13.904600:1-708 [pilon] NODE_7537_length_441_cov_21.081250:1-441 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 152, Coverage: 24, minDepth: 6 [pilon] Confirmed 371 of 441 bases (84.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7537_length_441_cov_21.081250:1-441 [pilon] Processing NODE_2480_length_970_cov_35.513545:1-970 [pilon] NODE_3176_length_835_cov_20.299720:1-835 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 343, Coverage: 35, minDepth: 9 [pilon] Confirmed 716 of 835 bases (85.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3176_length_835_cov_20.299720:1-835 [pilon] Processing NODE_96_length_3046_cov_3.953162:1-3046 [pilon] NODE_11625_length_258_cov_25.839416:1-258 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 80, Coverage: 5, minDepth: 5 [pilon] Confirmed 143 of 258 bases (55.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11625_length_258_cov_25.839416:1-258 [pilon] Processing NODE_846_length_1601_cov_2.127703:1-1601 [pilon] NODE_11343_length_270_cov_16.308725:1-270 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 48, Coverage: 6, minDepth: 5 [pilon] Confirmed 181 of 270 bases (67.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11343_length_270_cov_16.308725:1-270 [pilon] Processing NODE_3185_length_834_cov_18.903226:1-834 [pilon] NODE_8712_length_381_cov_31.492308:1-381 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 191, Coverage: 37, minDepth: 9 [pilon] Confirmed 330 of 381 bases (86.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8712_length_381_cov_31.492308:1-381 [pilon] Processing NODE_13370_length_243_cov_19.631148:1-243 [pilon] NODE_14466_length_243_cov_10.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_14426_length_243_cov_10.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14466_length_243_cov_10.532787:1-243 [pilon] Finished processing NODE_14426_length_243_cov_10.860656:1-243 [pilon] Processing NODE_3476_length_788_cov_9.256372:1-788 [pilon] Processing NODE_10005_length_325_cov_8.333333:1-325 [pilon] NODE_5468_length_579_cov_27.325328:1-579 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 282, Coverage: 41, minDepth: 10 [pilon] Confirmed 510 of 579 bases (88.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5468_length_579_cov_27.325328:1-579 [pilon] Processing NODE_956_length_1524_cov_16.923735:1-1524 [pilon] NODE_6528_length_501_cov_32.142105:1-501 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 278, Coverage: 45, minDepth: 11 [pilon] Confirmed 411 of 501 bases (82.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6528_length_501_cov_32.142105:1-501 [pilon] Processing NODE_6483_length_504_cov_28.250653:1-504 [pilon] NODE_9425_length_349_cov_9.587719:1-349 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 52, Coverage: 3, minDepth: 5 [pilon] Confirmed 52 of 349 bases (14.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9425_length_349_cov_9.587719:1-349 [pilon] Processing NODE_6023_length_539_cov_12.145933:1-539 [pilon] NODE_4889_length_627_cov_20.029644:1-627 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 217, Coverage: 18, minDepth: 5 [pilon] Confirmed 407 of 627 bases (64.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4889_length_627_cov_20.029644:1-627 [pilon] Processing NODE_1039_length_1474_cov_17.087953:1-1474 [pilon] NODE_10451_length_306_cov_18.983784:1-306 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 74, Coverage: 5, minDepth: 5 [pilon] Confirmed 147 of 306 bases (48.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10451_length_306_cov_18.983784:1-306 [pilon] Processing NODE_13493_length_243_cov_18.409836:1-243 [pilon] NODE_9238_length_356_cov_42.600000:1-356 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 226, Coverage: 18, minDepth: 5 [pilon] Confirmed 284 of 356 bases (79.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9238_length_356_cov_42.600000:1-356 [pilon] Processing NODE_13111_length_243_cov_21.868852:1-243 [pilon] NODE_2602_length_945_cov_12.797330:1-945 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 275, Coverage: 25, minDepth: 6 [pilon] Confirmed 892 of 945 bases (94.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2602_length_945_cov_12.797330:1-945 [pilon] Processing NODE_345_length_2132_cov_16.866733:1-2132 [pilon] NODE_14313_length_243_cov_11.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14313_length_243_cov_11.770492:1-243 [pilon] NODE_11581_length_261_cov_16.350000:1-261 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 50, Coverage: 6, minDepth: 5 [pilon] Confirmed 184 of 261 bases (70.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11581_length_261_cov_16.350000:1-261 [pilon] Processing NODE_6925_length_476_cov_7.997183:1-476 [pilon] Processing NODE_7030_length_469_cov_29.775862:1-469 [pilon] NODE_9725_length_336_cov_48.479070:1-336 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 231, Coverage: 39, minDepth: 10 [pilon] Confirmed 300 of 336 bases (89.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9725_length_336_cov_48.479070:1-336 [pilon] Processing NODE_1791_length_1150_cov_0.913508:1-1150 [pilon] NODE_4616_length_651_cov_24.662264:1-651 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 286, Coverage: 36, minDepth: 9 [pilon] Confirmed 403 of 651 bases (61.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4616_length_651_cov_24.662264:1-651 [pilon] Processing NODE_10897_length_288_cov_21.425150:1-288 [pilon] NODE_11860_length_251_cov_15.446154:1-251 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 47, Coverage: 4, minDepth: 5 [pilon] Confirmed 76 of 251 bases (30.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11860_length_251_cov_15.446154:1-251 [pilon] Processing NODE_8592_length_389_cov_12.776119:1-389 [pilon] NODE_5147_length_606_cov_14.292784:1-606 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 167, Coverage: 25, minDepth: 6 [pilon] Confirmed 517 of 606 bases (85.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5147_length_606_cov_14.292784:1-606 [pilon] Processing NODE_12034_length_246_cov_9.928000:1-246 [pilon] NODE_11918_length_249_cov_12.750000:1-249 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 37, Coverage: 4, minDepth: 5 [pilon] Confirmed 78 of 249 bases (31.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11918_length_249_cov_12.750000:1-249 [pilon] Processing NODE_4061_length_710_cov_1.168081:1-710 [pilon] NODE_7256_length_457_cov_0.541667:1-457 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 457 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7256_length_457_cov_0.541667:1-457 [pilon] Processing NODE_11904_length_249_cov_17.531250:1-249 [pilon] NODE_14519_length_243_cov_10.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14519_length_243_cov_10.155738:1-243 [pilon] Processing NODE_2686_length_931_cov_33.150617:1-931 [pilon] NODE_12703_length_243_cov_26.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12703_length_243_cov_26.131148:1-243 [pilon] Processing NODE_12044_length_246_cov_7.064000:1-246 [pilon] NODE_8356_length_402_cov_20.316726:1-402 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 103, Coverage: 12, minDepth: 5 [pilon] Confirmed 238 of 402 bases (59.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8356_length_402_cov_20.316726:1-402 [pilon] Processing NODE_7731_length_431_cov_1.109677:1-431 [pilon] NODE_7187_length_460_cov_31.029499:1-460 log: [pilon] NODE_4073_length_708_cov_13.904600:1-708 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 191, Coverage: 34, minDepth: 9 [pilon] Confirmed 551 of 708 bases (77.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4073_length_708_cov_13.904600:1-708 [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 241, Coverage: 34, minDepth: 9 [pilon] Confirmed 374 of 460 bases (81.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7187_length_460_cov_31.029499:1-460 [pilon] Processing NODE_1668_length_1193_cov_21.097948:1-1193 [pilon] Processing NODE_2368_length_998_cov_16.342075:1-998 [pilon] NODE_7171_length_461_cov_16.823529:1-461 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 138, Coverage: 20, minDepth: 5 [pilon] Confirmed 372 of 461 bases (80.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7171_length_461_cov_16.823529:1-461 [pilon] Processing NODE_5576_length_572_cov_31.829268:1-572 [pilon] NODE_10005_length_325_cov_8.333333:1-325 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 41, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 325 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10005_length_325_cov_8.333333:1-325 [pilon] Processing NODE_5725_length_561_cov_26.268182:1-561 [pilon] NODE_11807_length_252_cov_25.748092:1-252 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 68, Coverage: 4, minDepth: 5 [pilon] Confirmed 125 of 252 bases (49.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11807_length_252_cov_25.748092:1-252 [pilon] Processing NODE_12626_length_243_cov_27.221311:1-243 [pilon] NODE_956_length_1524_cov_16.923735:1-1524 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 572, Coverage: 42, minDepth: 11 [pilon] Confirmed 990 of 1524 bases (64.96%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_956_length_1524_cov_16.923735:1-1524 [pilon] Processing NODE_12939_length_243_cov_23.565574:1-243 [pilon] NODE_96_length_3046_cov_3.953162:1-3046 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 308, Coverage: 13, minDepth: 5 [pilon] Confirmed 2733 of 3046 bases (89.72%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_96_length_3046_cov_3.953162:1-3046 [pilon] Processing NODE_11857_length_251_cov_21.053846:1-251 [pilon] NODE_2480_length_970_cov_35.513545:1-970 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 688, Coverage: 72, minDepth: 18 [pilon] Confirmed 539 of 970 bases (55.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2480_length_970_cov_35.513545:1-970 [pilon] Processing NODE_8103_length_413_cov_33.780822:1-413 [pilon] NODE_3185_length_834_cov_18.903226:1-834 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 332, Coverage: 30, minDepth: 8 [pilon] Confirmed 610 of 834 bases (73.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3185_length_834_cov_18.903226:1-834 [pilon] Processing NODE_7626_length_436_cov_12.371429:1-436 [pilon] NODE_13370_length_243_cov_19.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13370_length_243_cov_19.631148:1-243 [pilon] Processing NODE_11816_length_252_cov_19.244275:1-252 [pilon] NODE_3476_length_788_cov_9.256372:1-788 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 211, Coverage: 25, minDepth: 6 [pilon] Confirmed 514 of 788 bases (65.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3476_length_788_cov_9.256372:1-788 [pilon] Processing NODE_12807_length_243_cov_24.959016:1-243 [pilon] NODE_846_length_1601_cov_2.127703:1-1601 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 96, Coverage: 8, minDepth: 5 [pilon] Confirmed 1038 of 1601 bases (64.83%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_846_length_1601_cov_2.127703:1-1601 [pilon] Processing NODE_331_length_2156_cov_3.606880:1-2156 [pilon] NODE_6023_length_539_cov_12.145933:1-539 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 147, Coverage: 16, minDepth: 5 [pilon] Confirmed 482 of 539 bases (89.42%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6023_length_539_cov_12.145933:1-539 [pilon] Processing NODE_10153_length_319_cov_11.828283:1-319 [pilon] NODE_13111_length_243_cov_21.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13111_length_243_cov_21.868852:1-243 [pilon] Processing NODE_8139_length_411_cov_17.624138:1-411 [pilon] NODE_6483_length_504_cov_28.250653:1-504 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 210, Coverage: 24, minDepth: 6 [pilon] Confirmed 349 of 504 bases (69.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6483_length_504_cov_28.250653:1-504 [pilon] Processing NODE_13397_length_243_cov_19.336066:1-243 [pilon] NODE_13493_length_243_cov_18.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13493_length_243_cov_18.409836:1-243 [pilon] Processing NODE_3047_length_864_cov_16.518170:1-864 [pilon] NODE_7030_length_469_cov_29.775862:1-469 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 259, Coverage: 21, minDepth: 5 [pilon] Confirmed 241 of 469 bases (51.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7030_length_469_cov_29.775862:1-469 [pilon] Processing NODE_1119_length_1431_cov_1.175573:1-1431 [pilon] NODE_1039_length_1474_cov_17.087953:1-1474 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 613, Coverage: 42, minDepth: 11 [pilon] Confirmed 1001 of 1474 bases (67.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1039_length_1474_cov_17.087953:1-1474 [pilon] Processing NODE_3604_length_768_cov_2.812983:1-768 [pilon] NODE_345_length_2132_cov_16.866733:1-2132 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 905, Coverage: 43, minDepth: 11 [pilon] Confirmed 1445 of 2132 bases (67.78%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_345_length_2132_cov_16.866733:1-2132 [pilon] Processing NODE_3029_length_868_cov_1.290495:1-868 [pilon] NODE_10897_length_288_cov_21.425150:1-288 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 75, Coverage: 10, minDepth: 5 [pilon] Confirmed 241 of 288 bases (83.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10897_length_288_cov_21.425150:1-288 [pilon] Processing NODE_1706_length_1178_cov_15.982971:1-1178 [pilon] NODE_6925_length_476_cov_7.997183:1-476 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 64, Coverage: 10, minDepth: 5 [pilon] Confirmed 360 of 476 bases (75.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6925_length_476_cov_7.997183:1-476 [pilon] Processing NODE_12467_length_243_cov_29.663934:1-243 [pilon] NODE_8592_length_389_cov_12.776119:1-389 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 83, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 389 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8592_length_389_cov_12.776119:1-389 [pilon] Processing NODE_3999_length_715_cov_26.424242:1-715 [pilon] NODE_1791_length_1150_cov_0.913508:1-1150 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 401 of 1150 bases (34.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1791_length_1150_cov_0.913508:1-1150 [pilon] Processing NODE_12413_length_243_cov_30.672131:1-243 [pilon] NODE_5725_length_561_cov_26.268182:1-561 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 274, Coverage: 43, minDepth: 11 [pilon] Confirmed 462 of 561 bases (82.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5725_length_561_cov_26.268182:1-561 [pilon] Processing NODE_9702_length_338_cov_25.635945:1-338 [pilon] NODE_4061_length_710_cov_1.168081:1-710 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 32, Coverage: 5, minDepth: 5 [pilon] Confirmed 367 of 710 bases (51.69%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4061_length_710_cov_1.168081:1-710 [pilon] Processing NODE_2829_length_905_cov_14.420918:1-905 [pilon] NODE_12939_length_243_cov_23.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12939_length_243_cov_23.565574:1-243 [pilon] Processing NODE_4998_length_618_cov_31.756539:1-618 [pilon] NODE_12034_length_246_cov_9.928000:1-246 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 29, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12034_length_246_cov_9.928000:1-246 [pilon] Processing NODE_52_length_3565_cov_9.647793:1-3565 [pilon] NODE_11904_length_249_cov_17.531250:1-249 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 39, Coverage: 5, minDepth: 5 [pilon] Confirmed 152 of 249 bases (61.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11904_length_249_cov_17.531250:1-249 [pilon] Processing NODE_14388_length_243_cov_11.155738:1-243 [pilon] NODE_2686_length_931_cov_33.150617:1-931 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 599, Coverage: 69, minDepth: 17 [pilon] Confirmed 785 of 931 bases (84.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2686_length_931_cov_33.150617:1-931 [pilon] Processing NODE_14525_length_243_cov_10.073770:1-243 [pilon] NODE_7731_length_431_cov_1.109677:1-431 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 25 of 431 bases (5.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7731_length_431_cov_1.109677:1-431 [pilon] Processing NODE_7059_length_467_cov_32.789017:1-467 [pilon] NODE_5576_length_572_cov_31.829268:1-572 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 321, Coverage: 43, minDepth: 11 [pilon] Confirmed 510 of 572 bases (89.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5576_length_572_cov_31.829268:1-572 [pilon] Processing NODE_13830_length_243_cov_15.385246:1-243 [pilon] NODE_12044_length_246_cov_7.064000:1-246 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12044_length_246_cov_7.064000:1-246 [pilon] Processing NODE_2563_length_954_cov_22.950780:1-954 [pilon] NODE_1668_length_1193_cov_21.097948:1-1193 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 542, Coverage: 58, minDepth: 15 [pilon] Confirmed 904 of 1193 bases (75.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1668_length_1193_cov_21.097948:1-1193 [pilon] Processing NODE_10103_length_321_cov_18.360000:1-321 [pilon] NODE_2368_length_998_cov_16.342075:1-998 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 335, Coverage: 24, minDepth: 6 [pilon] Confirmed 900 of 998 bases (90.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2368_length_998_cov_16.342075:1-998 [pilon] Processing NODE_1812_length_1144_cov_14.524927:1-1144 [pilon] NODE_7626_length_436_cov_12.371429:1-436 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 85, Coverage: 8, minDepth: 5 [pilon] Confirmed 272 of 436 bases (62.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7626_length_436_cov_12.371429:1-436 [pilon] Processing NODE_2896_length_893_cov_36.361399:1-893 [pilon] NODE_10153_length_319_cov_11.828283:1-319 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 54, Coverage: 2, minDepth: 5 [pilon] Confirmed 86 of 319 bases (26.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10153_length_319_cov_11.828283:1-319 [pilon] NODE_12626_length_243_cov_27.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12626_length_243_cov_27.221311:1-243 [pilon] Processing NODE_4140_length_700_cov_1.134715:1-700 [pilon] Processing NODE_6207_length_524_cov_1.267990:1-524 [pilon] NODE_11857_length_251_cov_21.053846:1-251 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 56, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 251 bases (51.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11857_length_251_cov_21.053846:1-251 [pilon] Processing NODE_9764_length_336_cov_11.376744:1-336 [pilon] NODE_8103_length_413_cov_33.780822:1-413 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 239, Coverage: 30, minDepth: 8 [pilon] Confirmed 295 of 413 bases (71.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8103_length_413_cov_33.780822:1-413 [pilon] Processing NODE_4677_length_645_cov_24.427481:1-645 [pilon] NODE_11816_length_252_cov_19.244275:1-252 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 60, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11816_length_252_cov_19.244275:1-252 [pilon] Processing NODE_7768_length_429_cov_11.620130:1-429 [pilon] NODE_12807_length_243_cov_24.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12807_length_243_cov_24.959016:1-243 [pilon] Processing NODE_10379_length_309_cov_26.484043:1-309 [pilon] NODE_3029_length_868_cov_1.290495:1-868 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 27, Coverage: 4, minDepth: 5 [pilon] Confirmed 316 of 868 bases (36.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3029_length_868_cov_1.290495:1-868 [pilon] Processing NODE_13006_length_243_cov_22.844262:1-243 [pilon] NODE_331_length_2156_cov_3.606880:1-2156 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 181, Coverage: 11, minDepth: 5 [pilon] Confirmed 1982 of 2156 bases (91.93%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_331_length_2156_cov_3.606880:1-2156 [pilon] Processing NODE_4593_length_654_cov_12.821764:1-654 [pilon] NODE_8139_length_411_cov_17.624138:1-411 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 146, Coverage: 13, minDepth: 5 [pilon] Confirmed 240 of 411 bases (58.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8139_length_411_cov_17.624138:1-411 [pilon] Processing NODE_3238_length_827_cov_2.015581:1-827 [pilon] NODE_13397_length_243_cov_19.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13397_length_243_cov_19.336066:1-243 [pilon] Processing NODE_3206_length_832_cov_11.988748:1-832 [pilon] NODE_3604_length_768_cov_2.812983:1-768 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 55, Coverage: 9, minDepth: 5 [pilon] Confirmed 586 of 768 bases (76.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3604_length_768_cov_2.812983:1-768 [pilon] Processing NODE_11050_length_282_cov_8.229814:1-282 [pilon] NODE_1119_length_1431_cov_1.175573:1-1431 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 45, Coverage: 4, minDepth: 5 [pilon] Confirmed 404 of 1431 bases (28.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1119_length_1431_cov_1.175573:1-1431 [pilon] Processing NODE_10430_length_307_cov_17.241935:1-307 [pilon] NODE_1706_length_1178_cov_15.982971:1-1178 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 377, Coverage: 30, minDepth: 8 [pilon] Confirmed 1078 of 1178 bases (91.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1706_length_1178_cov_15.982971:1-1178 [pilon] Processing NODE_2980_length_877_cov_30.996032:1-877 [pilon] NODE_12467_length_243_cov_29.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 95, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12467_length_243_cov_29.663934:1-243 [pilon] Processing NODE_3307_length_814_cov_7.030303:1-814 [pilon] NODE_3047_length_864_cov_16.518170:1-864 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 309, Coverage: 23, minDepth: 6 [pilon] Confirmed 747 of 864 bases (86.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3047_length_864_cov_16.518170:1-864 [pilon] Processing NODE_6422_length_509_cov_1.873711:1-509 [pilon] NODE_3999_length_715_cov_26.424242:1-715 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 368, Coverage: 42, minDepth: 11 [pilon] Confirmed 461 of 715 bases (64.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3999_length_715_cov_26.424242:1-715 [pilon] Processing NODE_5707_length_563_cov_3.142534:1-563 [pilon] NODE_9702_length_338_cov_25.635945:1-338 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 142, Coverage: 22, minDepth: 6 [pilon] Confirmed 262 of 338 bases (77.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9702_length_338_cov_25.635945:1-338 [pilon] Processing NODE_14810_length_243_cov_7.647541:1-243 [pilon] NODE_2829_length_905_cov_14.420918:1-905 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 282, Coverage: 30, minDepth: 8 [pilon] Confirmed 697 of 905 bases (77.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2829_length_905_cov_14.420918:1-905 [pilon] Processing NODE_1598_length_1218_cov_23.536919:1-1218 [pilon] NODE_2896_length_893_cov_36.361399:1-893 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 748, Coverage: 58, minDepth: 15 [pilon] Confirmed 697 of 893 bases (78.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2896_length_893_cov_36.361399:1-893 [pilon] Processing NODE_5914_length_546_cov_46.235294:1-546 [pilon] NODE_12413_length_243_cov_30.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12413_length_243_cov_30.672131:1-243 [pilon] Processing NODE_1515_length_1252_cov_12.898320:1-1252 [pilon] NODE_7768_length_429_cov_11.620130:1-429 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 83, Coverage: 13, minDepth: 5 [pilon] Confirmed 248 of 429 bases (57.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7768_length_429_cov_11.620130:1-429 [pilon] Processing NODE_3265_length_820_cov_19.638054:1-820 [pilon] NODE_4998_length_618_cov_31.756539:1-618 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 366, Coverage: 50, minDepth: 13 [pilon] Confirmed 564 of 618 bases (91.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4998_length_618_cov_31.756539:1-618 [pilon] Processing NODE_9156_length_359_cov_46.777311:1-359 [pilon] NODE_14525_length_243_cov_10.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14525_length_243_cov_10.073770:1-243 [pilon] Processing NODE_4820_length_633_cov_2.701172:1-633 [pilon] NODE_10103_length_321_cov_18.360000:1-321 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 81, Coverage: 11, minDepth: 5 [pilon] Confirmed 239 of 321 bases (74.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7059_length_467_cov_32.789017:1-467 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 217, Coverage: 22, minDepth: 6 [pilon] Confirmed 266 of 467 bases (56.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7059_length_467_cov_32.789017:1-467 [pilon] Finished processing NODE_10103_length_321_cov_18.360000:1-321 [pilon] Processing NODE_11223_length_275_cov_3.714286:1-275 [pilon] Processing NODE_12808_length_243_cov_24.959016:1-243 [pilon] NODE_13830_length_243_cov_15.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13830_length_243_cov_15.385246:1-243 [pilon] Processing NODE_11972_length_246_cov_30.784000:1-246 [pilon] NODE_14388_length_243_cov_11.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14388_length_243_cov_11.155738:1-243 [pilon] Processing NODE_9090_length_362_cov_15.618257:1-362 [pilon] NODE_52_length_3565_cov_9.647793:1-3565 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 777, Coverage: 28, minDepth: 7 [pilon] Confirmed 3297 of 3565 bases (92.48%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_52_length_3565_cov_9.647793:1-3565 [pilon] Processing NODE_15026_length_243_cov_5.122951:1-243 [pilon] NODE_4140_length_700_cov_1.134715:1-700 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 29, Coverage: 4, minDepth: 5 [pilon] Confirmed 305 of 700 bases (43.57%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4140_length_700_cov_1.134715:1-700 [pilon] Processing NODE_7443_length_446_cov_20.830769:1-446 [pilon] NODE_1812_length_1144_cov_14.524927:1-1144 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 372, Coverage: 34, minDepth: 9 [pilon] Confirmed 862 of 1144 bases (75.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1812_length_1144_cov_14.524927:1-1144 [pilon] Processing NODE_13783_length_243_cov_15.803279:1-243 [pilon] NODE_2563_length_954_cov_22.950780:1-954 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 464, Coverage: 39, minDepth: 10 [pilon] Confirmed 810 of 954 bases (84.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2563_length_954_cov_22.950780:1-954 [pilon] Processing NODE_10300_length_313_cov_14.911458:1-313 [pilon] NODE_13006_length_243_cov_22.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13006_length_243_cov_22.844262:1-243 [pilon] Processing NODE_1217_length_1383_cov_20.179873:1-1383 [pilon] NODE_9764_length_336_cov_11.376744:1-336 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 35, Coverage: 2, minDepth: 5 [pilon] Confirmed 103 of 336 bases (30.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9764_length_336_cov_11.376744:1-336 [pilon] Processing NODE_7825_length_426_cov_13.459016:1-426 [pilon] NODE_6207_length_524_cov_1.267990:1-524 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 19, Coverage: 4, minDepth: 5 [pilon] Confirmed 179 of 524 bases (34.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6207_length_524_cov_1.267990:1-524 [pilon] Processing NODE_5689_length_564_cov_9.826185:1-564 [pilon] NODE_4677_length_645_cov_24.427481:1-645 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 301, Coverage: 38, minDepth: 10 [pilon] Confirmed 497 of 645 bases (77.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4677_length_645_cov_24.427481:1-645 [pilon] Processing NODE_10142_length_320_cov_19.472362:1-320 [pilon] NODE_10379_length_309_cov_26.484043:1-309 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 106, Coverage: 15, minDepth: 5 [pilon] Confirmed 256 of 309 bases (82.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10379_length_309_cov_26.484043:1-309 [pilon] Processing NODE_11963_length_246_cov_35.736000:1-246 [pilon] NODE_3238_length_827_cov_2.015581:1-827 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 37, Coverage: 6, minDepth: 5 [pilon] Confirmed 427 of 827 bases (51.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3238_length_827_cov_2.015581:1-827 [pilon] Processing NODE_1652_length_1200_cov_4.078777:1-1200 [pilon] NODE_5914_length_546_cov_46.235294:1-546 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 430, Coverage: 66, minDepth: 17 [pilon] Confirmed 477 of 546 bases (87.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5914_length_546_cov_46.235294:1-546 [pilon] Processing NODE_27_length_4699_cov_22.063565:1-4699 [pilon] NODE_4593_length_654_cov_12.821764:1-654 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 159, Coverage: 17, minDepth: 5 [pilon] Confirmed 473 of 654 bases (72.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4593_length_654_cov_12.821764:1-654 [pilon] Processing NODE_4488_length_663_cov_1.383764:1-663 [pilon] NODE_10430_length_307_cov_17.241935:1-307 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 77, Coverage: 6, minDepth: 5 [pilon] Confirmed 151 of 307 bases (49.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10430_length_307_cov_17.241935:1-307 [pilon] Processing NODE_10925_length_288_cov_7.473054:1-288 [pilon] NODE_3265_length_820_cov_19.638054:1-820 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 348, Coverage: 36, minDepth: 9 [pilon] Confirmed 774 of 820 bases (94.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3265_length_820_cov_19.638054:1-820 [pilon] Processing NODE_5526_length_575_cov_25.138767:1-575 [pilon] NODE_2980_length_877_cov_30.996032:1-877 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 539, Coverage: 48, minDepth: 12 [pilon] Confirmed 739 of 877 bases (84.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2980_length_877_cov_30.996032:1-877 [pilon] Processing NODE_12458_length_243_cov_29.762295:1-243 [pilon] NODE_3206_length_832_cov_11.988748:1-832 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 205, Coverage: 25, minDepth: 6 [pilon] Confirmed 706 of 832 bases (84.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3206_length_832_cov_11.988748:1-832 [pilon] Processing NODE_13386_length_243_cov_19.483607:1-243 [pilon] NODE_11050_length_282_cov_8.229814:1-282 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 282 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11050_length_282_cov_8.229814:1-282 [pilon] Processing NODE_1260_length_1359_cov_12.731826:1-1359 [pilon] NODE_3307_length_814_cov_7.030303:1-814 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 160, Coverage: 12, minDepth: 5 [pilon] Confirmed 620 of 814 bases (76.17%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3307_length_814_cov_7.030303:1-814 [pilon] Processing NODE_3410_length_797_cov_14.798817:1-797 [pilon] NODE_6422_length_509_cov_1.873711:1-509 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 25, Coverage: 5, minDepth: 5 [pilon] Confirmed 239 of 509 bases (46.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6422_length_509_cov_1.873711:1-509 [pilon] Processing NODE_9732_length_336_cov_30.665116:1-336 [pilon] NODE_5707_length_563_cov_3.142534:1-563 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 404 of 563 bases (71.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5707_length_563_cov_3.142534:1-563 [pilon] Processing NODE_10164_length_318_cov_23.380711:1-318 [pilon] NODE_14810_length_243_cov_7.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14810_length_243_cov_7.647541:1-243 [pilon] Processing NODE_633_length_1769_cov_16.250607:1-1769 [pilon] NODE_1598_length_1218_cov_23.536919:1-1218 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 584, Coverage: 40, minDepth: 10 [pilon] Confirmed 1106 of 1218 bases (90.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1598_length_1218_cov_23.536919:1-1218 [pilon] Processing NODE_529_length_1882_cov_12.812606:1-1882 [pilon] NODE_4820_length_633_cov_2.701172:1-633 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 55, Coverage: 8, minDepth: 5 [pilon] Confirmed 533 of 633 bases (84.20%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4820_length_633_cov_2.701172:1-633 [pilon] Processing NODE_4621_length_651_cov_1.430189:1-651 [pilon] NODE_1217_length_1383_cov_20.179873:1-1383 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 600, Coverage: 29, minDepth: 7 [pilon] Confirmed 1279 of 1383 bases (92.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1217_length_1383_cov_20.179873:1-1383 [pilon] Processing NODE_3436_length_793_cov_37.867560:1-793 [pilon] NODE_9156_length_359_cov_46.777311:1-359 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 260, Coverage: 40, minDepth: 10 [pilon] Confirmed 306 of 359 bases (85.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9156_length_359_cov_46.777311:1-359 [pilon] Processing NODE_2683_length_932_cov_12.314427:1-932 [pilon] NODE_9090_length_362_cov_15.618257:1-362 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 362 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9090_length_362_cov_15.618257:1-362 [pilon] Processing NODE_734_length_1675_cov_12.714929:1-1675 [pilon] NODE_1515_length_1252_cov_12.898320:1-1252 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 396, Coverage: 33, minDepth: 8 [pilon] Confirmed 828 of 1252 bases (66.13%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1515_length_1252_cov_12.898320:1-1252 [pilon] Processing NODE_10646_length_300_cov_11.787709:1-300 [pilon] NODE_11972_length_246_cov_30.784000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 76, Coverage: 3, minDepth: 5 [pilon] Confirmed 51 of 246 bases (20.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11972_length_246_cov_30.784000:1-246 [pilon] Processing NODE_5060_length_614_cov_1.667343:1-614 [pilon] NODE_11223_length_275_cov_3.714286:1-275 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 275 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11223_length_275_cov_3.714286:1-275 [pilon] Processing NODE_14619_length_243_cov_9.254098:1-243 [pilon] NODE_12808_length_243_cov_24.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12808_length_243_cov_24.959016:1-243 [pilon] Processing NODE_6516_length_502_cov_23.553806:1-502 [pilon] NODE_7825_length_426_cov_13.459016:1-426 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 94, Coverage: 11, minDepth: 5 [pilon] Confirmed 283 of 426 bases (66.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7825_length_426_cov_13.459016:1-426 [pilon] Processing NODE_6222_length_523_cov_1.457711:1-523 [pilon] NODE_13783_length_243_cov_15.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13783_length_243_cov_15.803279:1-243 [pilon] Processing NODE_10509_length_304_cov_15.513661:1-304 [pilon] NODE_7443_length_446_cov_20.830769:1-446 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 160, Coverage: 30, minDepth: 8 [pilon] Confirmed 379 of 446 bases (84.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7443_length_446_cov_20.830769:1-446 [pilon] Processing NODE_3231_length_829_cov_1.923729:1-829 [pilon] NODE_15026_length_243_cov_5.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15026_length_243_cov_5.122951:1-243 [pilon] Processing NODE_5040_length_616_cov_2.187879:1-616 [pilon] NODE_10300_length_313_cov_14.911458:1-313 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 64, Coverage: 7, minDepth: 5 [pilon] Confirmed 200 of 313 bases (63.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10300_length_313_cov_14.911458:1-313 [pilon] Processing NODE_11724_length_255_cov_24.417910:1-255 [pilon] NODE_1652_length_1200_cov_4.078777:1-1200 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 110, Coverage: 12, minDepth: 5 [pilon] Confirmed 985 of 1200 bases (82.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1652_length_1200_cov_4.078777:1-1200 [pilon] Processing NODE_3938_length_722_cov_30.928453:1-722 [pilon] NODE_5689_length_564_cov_9.826185:1-564 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 107, Coverage: 12, minDepth: 5 [pilon] Confirmed 412 of 564 bases (73.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5689_length_564_cov_9.826185:1-564 [pilon] Processing NODE_11827_length_252_cov_14.809160:1-252 [pilon] NODE_11963_length_246_cov_35.736000:1-246 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 107, Coverage: 6, minDepth: 5 [pilon] Confirmed 151 of 246 bases (61.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11963_length_246_cov_35.736000:1-246 [pilon] Processing NODE_13732_length_243_cov_16.163934:1-243 [pilon] NODE_10142_length_320_cov_19.472362:1-320 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 93, Coverage: 13, minDepth: 5 [pilon] Confirmed 244 of 320 bases (76.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10142_length_320_cov_19.472362:1-320 [pilon] Processing NODE_7323_length_452_cov_14.921450:1-452 [pilon] NODE_27_length_4699_cov_22.063565:1-4699 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 2384, Coverage: 56, minDepth: 14 [pilon] Confirmed 3449 of 4699 bases (73.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_27_length_4699_cov_22.063565:1-4699 [pilon] Processing NODE_11278_length_273_cov_11.894737:1-273 [pilon] NODE_12458_length_243_cov_29.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12458_length_243_cov_29.762295:1-243 [pilon] Processing NODE_8683_length_383_cov_51.450382:1-383 [pilon] NODE_4488_length_663_cov_1.383764:1-663 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 239 of 663 bases (36.05%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4488_length_663_cov_1.383764:1-663 [pilon] Processing NODE_12834_length_243_cov_24.713115:1-243 [pilon] NODE_10925_length_288_cov_7.473054:1-288 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 29, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 288 bases (45.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10925_length_288_cov_7.473054:1-288 [pilon] Processing NODE_12678_length_243_cov_26.467213:1-243 [pilon] NODE_5526_length_575_cov_25.138767:1-575 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 308, Coverage: 41, minDepth: 10 [pilon] Confirmed 461 of 575 bases (80.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5526_length_575_cov_25.138767:1-575 [pilon] Processing NODE_14278_length_243_cov_12.016393:1-243 [pilon] NODE_1260_length_1359_cov_12.731826:1-1359 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 364, Coverage: 22, minDepth: 6 [pilon] Confirmed 1228 of 1359 bases (90.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1260_length_1359_cov_12.731826:1-1359 [pilon] Processing NODE_8482_length_395_cov_15.171533:1-395 [pilon] NODE_13386_length_243_cov_19.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13386_length_243_cov_19.483607:1-243 [pilon] Processing NODE_5746_length_560_cov_2.676538:1-560 [pilon] NODE_3436_length_793_cov_37.867560:1-793 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 582, Coverage: 77, minDepth: 19 [pilon] Confirmed 668 of 793 bases (84.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3436_length_793_cov_37.867560:1-793 [pilon] Processing NODE_10146_length_320_cov_8.597990:1-320 [pilon] NODE_3410_length_797_cov_14.798817:1-797 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 243, Coverage: 25, minDepth: 6 [pilon] Confirmed 619 of 797 bases (77.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3410_length_797_cov_14.798817:1-797 [pilon] Processing NODE_8062_length_415_cov_1.489796:1-415 [pilon] NODE_10164_length_318_cov_23.380711:1-318 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 97, Coverage: 12, minDepth: 5 [pilon] Confirmed 247 of 318 bases (77.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10164_length_318_cov_23.380711:1-318 [pilon] Processing NODE_5932_length_545_cov_57.341981:1-545 [pilon] NODE_9732_length_336_cov_30.665116:1-336 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 150, Coverage: 19, minDepth: 5 [pilon] Confirmed 280 of 336 bases (83.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9732_length_336_cov_30.665116:1-336 [pilon] Processing NODE_7389_length_449_cov_1.442073:1-449 [pilon] NODE_529_length_1882_cov_12.812606:1-1882 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 584, Coverage: 31, minDepth: 8 [pilon] Confirmed 1564 of 1882 bases (83.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_529_length_1882_cov_12.812606:1-1882 [pilon] Processing NODE_10814_length_292_cov_7.789474:1-292 [pilon] NODE_3938_length_722_cov_30.928453:1-722 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 464, Coverage: 54, minDepth: 14 [pilon] Confirmed 587 of 722 bases (81.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3938_length_722_cov_30.928453:1-722 [pilon] Processing NODE_1818_length_1141_cov_2.748039:1-1141 [pilon] NODE_4621_length_651_cov_1.430189:1-651 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 25, Coverage: 5, minDepth: 5 [pilon] Confirmed 401 of 651 bases (61.60%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4621_length_651_cov_1.430189:1-651 [pilon] Processing NODE_7135_length_463_cov_28.096491:1-463 [pilon] NODE_633_length_1769_cov_16.250607:1-1769 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 652, Coverage: 38, minDepth: 10 [pilon] Confirmed 1574 of 1769 bases (88.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_633_length_1769_cov_16.250607:1-1769 [pilon] Processing NODE_15246_length_128_cov_63.428571:1-128 [pilon] NODE_14619_length_243_cov_9.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14619_length_243_cov_9.254098:1-243 [pilon] Processing NODE_8304_length_404_cov_27.498233:1-404 [pilon] NODE_5060_length_614_cov_1.667343:1-614 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 340 of 614 bases (55.37%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5060_length_614_cov_1.667343:1-614 [pilon] Processing NODE_10401_length_309_cov_11.398936:1-309 [pilon] NODE_2683_length_932_cov_12.314427:1-932 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 249, Coverage: 18, minDepth: 5 [pilon] Confirmed 893 of 932 bases (95.82%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2683_length_932_cov_12.314427:1-932 [pilon] Processing NODE_12924_length_243_cov_23.778689:1-243 [pilon] NODE_10646_length_300_cov_11.787709:1-300 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 46, Coverage: 3, minDepth: 5 [pilon] Confirmed 128 of 300 bases (42.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10646_length_300_cov_11.787709:1-300 [pilon] Processing NODE_14520_length_243_cov_10.139344:1-243 [pilon] NODE_734_length_1675_cov_12.714929:1-1675 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 471, Coverage: 30, minDepth: 8 [pilon] Confirmed 1245 of 1675 bases (74.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_734_length_1675_cov_12.714929:1-1675 [pilon] Processing NODE_5720_length_562_cov_0.843537:1-562 [pilon] NODE_11278_length_273_cov_11.894737:1-273 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11278_length_273_cov_11.894737:1-273 [pilon] Processing NODE_6814_length_482_cov_24.229917:1-482 [pilon] NODE_5040_length_616_cov_2.187879:1-616 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 397 of 616 bases (64.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5040_length_616_cov_2.187879:1-616 [pilon] Processing NODE_14908_length_243_cov_6.606557:1-243 [pilon] NODE_6516_length_502_cov_23.553806:1-502 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 211, Coverage: 28, minDepth: 7 [pilon] Confirmed 449 of 502 bases (89.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6516_length_502_cov_23.553806:1-502 [pilon] Processing NODE_11965_length_246_cov_35.016000:1-246 [pilon] NODE_6222_length_523_cov_1.457711:1-523 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 223 of 523 bases (42.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6222_length_523_cov_1.457711:1-523 [pilon] Processing NODE_445_length_1976_cov_1.833423:1-1976 [pilon] NODE_10509_length_304_cov_15.513661:1-304 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 69, Coverage: 6, minDepth: 5 [pilon] Confirmed 159 of 304 bases (52.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10509_length_304_cov_15.513661:1-304 [pilon] Processing NODE_8142_length_411_cov_15.503448:1-411 [pilon] NODE_3231_length_829_cov_1.923729:1-829 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 45, Coverage: 7, minDepth: 5 [pilon] Confirmed 406 of 829 bases (48.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3231_length_829_cov_1.923729:1-829 [pilon] Processing NODE_7430_length_447_cov_1.960123:1-447 [pilon] NODE_11827_length_252_cov_14.809160:1-252 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 39, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11827_length_252_cov_14.809160:1-252 [pilon] Processing NODE_10402_length_309_cov_11.297872:1-309 [pilon] NODE_11724_length_255_cov_24.417910:1-255 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 65, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 255 bases (50.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11724_length_255_cov_24.417910:1-255 [pilon] Processing NODE_7006_length_471_cov_2.360000:1-471 [pilon] NODE_13732_length_243_cov_16.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13732_length_243_cov_16.163934:1-243 [pilon] Processing NODE_12549_length_243_cov_28.286885:1-243 [pilon] NODE_7323_length_452_cov_14.921450:1-452 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 141, Coverage: 24, minDepth: 6 [pilon] Confirmed 281 of 452 bases (62.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7323_length_452_cov_14.921450:1-452 [pilon] Processing NODE_10461_length_306_cov_14.978378:1-306 [pilon] NODE_10146_length_320_cov_8.597990:1-320 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 39, Coverage: 3, minDepth: 5 [pilon] Confirmed 114 of 320 bases (35.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10146_length_320_cov_8.597990:1-320 [pilon] Processing NODE_1249_length_1367_cov_1.491974:1-1367 [pilon] NODE_14278_length_243_cov_12.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12834_length_243_cov_24.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12834_length_243_cov_24.713115:1-243 [pilon] Finished processing NODE_14278_length_243_cov_12.016393:1-243 [pilon] Processing NODE_3885_length_730_cov_3.108374:1-730 [pilon] Processing NODE_14494_length_243_cov_10.327869:1-243 [pilon] NODE_12678_length_243_cov_26.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12678_length_243_cov_26.467213:1-243 [pilon] Processing NODE_11266_length_273_cov_15.421053:1-273 [pilon] NODE_8683_length_383_cov_51.450382:1-383 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 285, Coverage: 53, minDepth: 13 [pilon] Confirmed 329 of 383 bases (85.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8683_length_383_cov_51.450382:1-383 [pilon] Processing NODE_6196_length_524_cov_30.739454:1-524 [pilon] NODE_5746_length_560_cov_2.676538:1-560 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 30, Coverage: 7, minDepth: 5 [pilon] Confirmed 416 of 560 bases (74.29%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5746_length_560_cov_2.676538:1-560 [pilon] Processing NODE_743_length_1671_cov_15.239355:1-1671 [pilon] NODE_1818_length_1141_cov_2.748039:1-1141 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 72, Coverage: 8, minDepth: 5 [pilon] Confirmed 726 of 1141 bases (63.63%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1818_length_1141_cov_2.748039:1-1141 [pilon] Processing NODE_5449_length_580_cov_51.211329:1-580 [pilon] NODE_8482_length_395_cov_15.171533:1-395 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 100, Coverage: 16, minDepth: 5 [pilon] Confirmed 310 of 395 bases (78.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8482_length_395_cov_15.171533:1-395 [pilon] Processing NODE_7798_length_428_cov_0.631922:1-428 [pilon] NODE_7389_length_449_cov_1.442073:1-449 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 65 of 449 bases (14.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7389_length_449_cov_1.442073:1-449 [pilon] Processing NODE_12906_length_243_cov_24.032787:1-243 [pilon] NODE_8062_length_415_cov_1.489796:1-415 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 215 of 415 bases (51.81%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8062_length_415_cov_1.489796:1-415 [pilon] Processing NODE_4641_length_648_cov_25.404175:1-648 [pilon] NODE_5932_length_545_cov_57.341981:1-545 log: [pilon] frags shovill.bam: coverage 99 [pilon] Total Reads: 570, Coverage: 99, minDepth: 25 [pilon] Confirmed 481 of 545 bases (88.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5932_length_545_cov_57.341981:1-545 [pilon] Processing NODE_14037_length_243_cov_13.926230:1-243 [pilon] NODE_6814_length_482_cov_24.229917:1-482 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 190, Coverage: 20, minDepth: 5 [pilon] Confirmed 318 of 482 bases (65.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6814_length_482_cov_24.229917:1-482 [pilon] Processing NODE_2273_length_1016_cov_3.294972:1-1016 [pilon] NODE_10814_length_292_cov_7.789474:1-292 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 37, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 292 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10814_length_292_cov_7.789474:1-292 [pilon] Processing NODE_9366_length_351_cov_22.600000:1-351 [pilon] NODE_10401_length_309_cov_11.398936:1-309 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 36, Coverage: 4, minDepth: 5 [pilon] Confirmed 132 of 309 bases (42.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10401_length_309_cov_11.398936:1-309 [pilon] Processing NODE_3458_length_791_cov_1.994030:1-791 [pilon] NODE_7135_length_463_cov_28.096491:1-463 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 217, Coverage: 25, minDepth: 6 [pilon] Confirmed 319 of 463 bases (68.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7135_length_463_cov_28.096491:1-463 [pilon] Processing NODE_1640_length_1203_cov_26.567468:1-1203 [pilon] NODE_15246_length_128_cov_63.428571:1-128 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 128 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15246_length_128_cov_63.428571:1-128 [pilon] Processing NODE_11137_length_279_cov_5.544304:1-279 [pilon] NODE_8304_length_404_cov_27.498233:1-404 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 174, Coverage: 26, minDepth: 7 [pilon] Confirmed 302 of 404 bases (74.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8304_length_404_cov_27.498233:1-404 [pilon] Processing NODE_4627_length_650_cov_1.525520:1-650 [pilon] NODE_12924_length_243_cov_23.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12924_length_243_cov_23.778689:1-243 [pilon] Processing NODE_6220_length_523_cov_4.094527:1-523 [pilon] NODE_11965_length_246_cov_35.016000:1-246 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 86, Coverage: 8, minDepth: 5 [pilon] Confirmed 194 of 246 bases (78.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11965_length_246_cov_35.016000:1-246 [pilon] Processing NODE_8825_length_375_cov_27.885827:1-375 [pilon] NODE_445_length_1976_cov_1.833423:1-1976 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 103, Coverage: 7, minDepth: 5 [pilon] Confirmed 1225 of 1976 bases (61.99%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_445_length_1976_cov_1.833423:1-1976 [pilon] Processing NODE_11770_length_254_cov_44.218045:1-254 [pilon] NODE_14908_length_243_cov_6.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14908_length_243_cov_6.606557:1-243 [pilon] Processing NODE_5423_length_582_cov_27.036876:1-582 [pilon] NODE_5720_length_562_cov_0.843537:1-562 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 56 of 562 bases (9.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5720_length_562_cov_0.843537:1-562 [pilon] Processing NODE_2486_length_970_cov_15.428740:1-970 [pilon] NODE_10461_length_306_cov_14.978378:1-306 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 52, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10461_length_306_cov_14.978378:1-306 [pilon] Processing NODE_13640_length_243_cov_17.122951:1-243 [pilon] NODE_1249_length_1367_cov_1.491974:1-1367 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 74, Coverage: 7, minDepth: 5 [pilon] Confirmed 886 of 1367 bases (64.81%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1249_length_1367_cov_1.491974:1-1367 [pilon] Processing NODE_12312_length_243_cov_32.942623:1-243 [pilon] NODE_8142_length_411_cov_15.503448:1-411 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 86, Coverage: 12, minDepth: 5 [pilon] Confirmed 295 of 411 bases (71.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8142_length_411_cov_15.503448:1-411 [pilon] Processing NODE_14973_length_243_cov_5.770492:1-243 [pilon] NODE_7430_length_447_cov_1.960123:1-447 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 297 of 447 bases (66.44%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7430_length_447_cov_1.960123:1-447 [pilon] Processing NODE_8078_length_414_cov_18.774744:1-414 [pilon] NODE_10402_length_309_cov_11.297872:1-309 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 50, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 309 bases (41.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10402_length_309_cov_11.297872:1-309 [pilon] Processing NODE_8201_length_408_cov_20.790941:1-408 [pilon] NODE_7006_length_471_cov_2.360000:1-471 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 29, Coverage: 7, minDepth: 5 [pilon] Confirmed 334 of 471 bases (70.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7006_length_471_cov_2.360000:1-471 [pilon] Processing NODE_12657_length_243_cov_26.745902:1-243 [pilon] NODE_14520_length_243_cov_10.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14520_length_243_cov_10.139344:1-243 [pilon] Processing NODE_899_length_1561_cov_19.210417:1-1561 [pilon] NODE_12549_length_243_cov_28.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12549_length_243_cov_28.286885:1-243 [pilon] Processing NODE_9399_length_350_cov_30.794760:1-350 [pilon] NODE_6196_length_524_cov_30.739454:1-524 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 262, Coverage: 47, minDepth: 12 [pilon] Confirmed 495 of 524 bases (94.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6196_length_524_cov_30.739454:1-524 [pilon] Processing NODE_2706_length_928_cov_17.976456:1-928 [pilon] NODE_14494_length_243_cov_10.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14494_length_243_cov_10.327869:1-243 [pilon] Processing NODE_811_length_1621_cov_20.628000:1-1621 [pilon] NODE_3885_length_730_cov_3.108374:1-730 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 50, Coverage: 9, minDepth: 5 [pilon] Confirmed 474 of 730 bases (64.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3885_length_730_cov_3.108374:1-730 [pilon] Processing NODE_12802_length_243_cov_25.016393:1-243 [pilon] NODE_11266_length_273_cov_15.421053:1-273 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 61, Coverage: 3, minDepth: 5 [pilon] Confirmed 81 of 273 bases (29.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11266_length_273_cov_15.421053:1-273 [pilon] Processing NODE_10782_length_294_cov_16.647399:1-294 [pilon] NODE_7798_length_428_cov_0.631922:1-428 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 428 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7798_length_428_cov_0.631922:1-428 [pilon] Processing NODE_8928_length_369_cov_30.536290:1-369 [pilon] NODE_5449_length_580_cov_51.211329:1-580 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 571, Coverage: 85, minDepth: 21 [pilon] Confirmed 508 of 580 bases (87.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5449_length_580_cov_51.211329:1-580 [pilon] Processing NODE_6913_length_477_cov_3.179775:1-477 [pilon] NODE_14037_length_243_cov_13.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14037_length_243_cov_13.926230:1-243 [pilon] Processing NODE_3076_length_858_cov_7.252374:1-858 [pilon] NODE_743_length_1671_cov_15.239355:1-1671 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 575, Coverage: 36, minDepth: 9 [pilon] Confirmed 1558 of 1671 bases (93.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_743_length_1671_cov_15.239355:1-1671 [pilon] Processing NODE_14812_length_243_cov_7.631148:1-243 [pilon] NODE_3458_length_791_cov_1.994030:1-791 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 59, Coverage: 8, minDepth: 5 [pilon] Confirmed 580 of 791 bases (73.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3458_length_791_cov_1.994030:1-791 [pilon] Processing NODE_7442_length_446_cov_22.289231:1-446 [pilon] NODE_12906_length_243_cov_24.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12906_length_243_cov_24.032787:1-243 [pilon] Processing NODE_2516_length_964_cov_13.804270:1-964 [pilon] NODE_2273_length_1016_cov_3.294972:1-1016 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 72, Coverage: 9, minDepth: 5 [pilon] Confirmed 798 of 1016 bases (78.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2273_length_1016_cov_3.294972:1-1016 [pilon] Processing NODE_14498_length_243_cov_10.319672:1-243 [pilon] NODE_4641_length_648_cov_25.404175:1-648 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 323, Coverage: 28, minDepth: 7 [pilon] Confirmed 464 of 648 bases (71.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_11137_length_279_cov_5.544304:1-279 log: [pilon] Finished processing NODE_4641_length_648_cov_25.404175:1-648 [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 21, Coverage: 2, minDepth: 5 [pilon] Confirmed 68 of 279 bases (24.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11137_length_279_cov_5.544304:1-279 [pilon] Processing NODE_315_length_2206_cov_10.420624:1-2206 [pilon] Processing NODE_14914_length_243_cov_6.540984:1-243 [pilon] NODE_9366_length_351_cov_22.600000:1-351 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 112, Coverage: 11, minDepth: 5 [pilon] Confirmed 221 of 351 bases (62.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9366_length_351_cov_22.600000:1-351 [pilon] Processing NODE_5086_length_611_cov_24.218367:1-611 [pilon] NODE_12312_length_243_cov_32.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12312_length_243_cov_32.942623:1-243 [pilon] Processing NODE_4442_length_667_cov_2.146520:1-667 [pilon] NODE_1640_length_1203_cov_26.567468:1-1203 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 693, Coverage: 64, minDepth: 16 [pilon] Confirmed 1051 of 1203 bases (87.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1640_length_1203_cov_26.567468:1-1203 [pilon] Processing NODE_9533_length_345_cov_11.941964:1-345 [pilon] NODE_11770_length_254_cov_44.218045:1-254 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 131, Coverage: 11, minDepth: 5 [pilon] Confirmed 205 of 254 bases (80.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11770_length_254_cov_44.218045:1-254 [pilon] Processing NODE_1285_length_1347_cov_2.453507:1-1347 [pilon] NODE_8078_length_414_cov_18.774744:1-414 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 128, Coverage: 13, minDepth: 5 [pilon] Confirmed 313 of 414 bases (75.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8078_length_414_cov_18.774744:1-414 [pilon] Processing NODE_7571_length_440_cov_0.545455:1-440 [pilon] NODE_6220_length_523_cov_4.094527:1-523 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 38, Coverage: 9, minDepth: 5 [pilon] Confirmed 425 of 523 bases (81.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6220_length_523_cov_4.094527:1-523 [pilon] Processing NODE_6370_length_512_cov_29.358056:1-512 [pilon] NODE_4627_length_650_cov_1.525520:1-650 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 227 of 650 bases (34.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4627_length_650_cov_1.525520:1-650 [pilon] NODE_8825_length_375_cov_27.885827:1-375 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 164, Coverage: 30, minDepth: 8 [pilon] Confirmed 318 of 375 bases (84.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8825_length_375_cov_27.885827:1-375 [pilon] Processing NODE_10817_length_291_cov_32.664706:1-291 [pilon] Processing NODE_573_length_1834_cov_1.593695:1-1834 [pilon] NODE_12802_length_243_cov_25.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12802_length_243_cov_25.016393:1-243 [pilon] Processing NODE_4487_length_663_cov_1.981550:1-663 [pilon] NODE_13640_length_243_cov_17.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13640_length_243_cov_17.122951:1-243 [pilon] Processing NODE_1916_length_1107_cov_14.504057:1-1107 [pilon] NODE_14973_length_243_cov_5.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14973_length_243_cov_5.770492:1-243 [pilon] Processing NODE_10422_length_307_cov_31.897849:1-307 [pilon] NODE_2486_length_970_cov_15.428740:1-970 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 314, Coverage: 31, minDepth: 8 [pilon] Confirmed 823 of 970 bases (84.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2486_length_970_cov_15.428740:1-970 [pilon] Processing NODE_10704_length_297_cov_24.522727:1-297 [pilon] NODE_9399_length_350_cov_30.794760:1-350 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 153, Coverage: 5, minDepth: 5 [pilon] Confirmed 156 of 350 bases (44.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9399_length_350_cov_30.794760:1-350 [pilon] Processing NODE_2258_length_1019_cov_45.335189:1-1019 [pilon] NODE_12657_length_243_cov_26.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12657_length_243_cov_26.745902:1-243 [pilon] Processing NODE_2278_length_1015_cov_23.448546:1-1015 [pilon] NODE_811_length_1621_cov_20.628000:1-1621 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 726, Coverage: 42, minDepth: 11 [pilon] Confirmed 1293 of 1621 bases (79.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_811_length_1621_cov_20.628000:1-1621 [pilon] Processing NODE_13356_length_243_cov_19.803279:1-243 [pilon] NODE_2706_length_928_cov_17.976456:1-928 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 338, Coverage: 47, minDepth: 12 [pilon] Confirmed 605 of 928 bases (65.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2706_length_928_cov_17.976456:1-928 [pilon] Processing NODE_10374_length_309_cov_34.414894:1-309 [pilon] NODE_10782_length_294_cov_16.647399:1-294 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 60, Coverage: 5, minDepth: 5 [pilon] Confirmed 146 of 294 bases (49.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10782_length_294_cov_16.647399:1-294 [pilon] Processing NODE_8968_length_368_cov_20.906883:1-368 [pilon] NODE_899_length_1561_cov_19.210417:1-1561 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 648, Coverage: 48, minDepth: 12 [pilon] Confirmed 1190 of 1561 bases (76.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_899_length_1561_cov_19.210417:1-1561 [pilon] Processing NODE_2234_length_1024_cov_26.361019:1-1024 [pilon] NODE_6913_length_477_cov_3.179775:1-477 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 36, Coverage: 8, minDepth: 5 [pilon] Confirmed 329 of 477 bases (68.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6913_length_477_cov_3.179775:1-477 [pilon] Processing NODE_10547_length_303_cov_15.010989:1-303 [pilon] NODE_5423_length_582_cov_27.036876:1-582 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 298, Coverage: 29, minDepth: 7 [pilon] Confirmed 452 of 582 bases (77.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5423_length_582_cov_27.036876:1-582 [pilon] Processing NODE_8800_length_377_cov_31.910156:1-377 [pilon] NODE_14812_length_243_cov_7.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14812_length_243_cov_7.631148:1-243 [pilon] Processing NODE_9948_length_327_cov_35.237864:1-327 [pilon] NODE_8928_length_369_cov_30.536290:1-369 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 145, Coverage: 19, minDepth: 5 [pilon] Confirmed 248 of 369 bases (67.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8928_length_369_cov_30.536290:1-369 [pilon] Processing NODE_10202_length_317_cov_22.663265:1-317 [pilon] NODE_3076_length_858_cov_7.252374:1-858 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 161, Coverage: 14, minDepth: 5 [pilon] Confirmed 535 of 858 bases (62.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3076_length_858_cov_7.252374:1-858 [pilon] Processing NODE_2667_length_934_cov_44.777368:1-934 [pilon] NODE_315_length_2206_cov_10.420624:1-2206 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 512, Coverage: 30, minDepth: 8 [pilon] Confirmed 1840 of 2206 bases (83.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_315_length_2206_cov_10.420624:1-2206 [pilon] Processing NODE_320_length_2197_cov_1.812139:1-2197 [pilon] NODE_8201_length_408_cov_20.790941:1-408 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 132, Coverage: 19, minDepth: 5 [pilon] Confirmed 304 of 408 bases (74.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7442_length_446_cov_22.289231:1-446 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 160, Coverage: 23, minDepth: 6 [pilon] Confirmed 345 of 446 bases (77.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7442_length_446_cov_22.289231:1-446 [pilon] Finished processing NODE_8201_length_408_cov_20.790941:1-408 [pilon] Processing NODE_8571_length_390_cov_11.260223:1-390 [pilon] Processing NODE_10581_length_302_cov_15.508287:1-302 [pilon] NODE_9533_length_345_cov_11.941964:1-345 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 52, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 345 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9533_length_345_cov_11.941964:1-345 [pilon] Processing NODE_10083_length_321_cov_32.730000:1-321 [pilon] NODE_14498_length_243_cov_10.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14498_length_243_cov_10.319672:1-243 [pilon] Processing NODE_386_length_2064_cov_29.700978:1-2064 [pilon] NODE_14914_length_243_cov_6.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14914_length_243_cov_6.540984:1-243 [pilon] Processing NODE_2620_length_942_cov_21.841657:1-942 [pilon] NODE_2516_length_964_cov_13.804270:1-964 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 273, Coverage: 23, minDepth: 6 [pilon] Confirmed 691 of 964 bases (71.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2516_length_964_cov_13.804270:1-964 [pilon] Processing NODE_3058_length_861_cov_29.035135:1-861 [pilon] NODE_4487_length_663_cov_1.981550:1-663 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 45, Coverage: 9, minDepth: 5 [pilon] Confirmed 433 of 663 bases (65.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4487_length_663_cov_1.981550:1-663 [pilon] Processing NODE_14571_length_243_cov_9.737705:1-243 [pilon] NODE_5086_length_611_cov_24.218367:1-611 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 279, Coverage: 35, minDepth: 9 [pilon] Confirmed 441 of 611 bases (72.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5086_length_611_cov_24.218367:1-611 [pilon] Processing NODE_1713_length_1177_cov_17.333333:1-1177 [pilon] NODE_4442_length_667_cov_2.146520:1-667 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 423 of 667 bases (63.42%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4442_length_667_cov_2.146520:1-667 [pilon] Processing NODE_4138_length_700_cov_1.461140:1-700 [pilon] NODE_7571_length_440_cov_0.545455:1-440 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 440 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7571_length_440_cov_0.545455:1-440 [pilon] Processing NODE_3515_length_781_cov_14.330303:1-781 [pilon] NODE_1285_length_1347_cov_2.453507:1-1347 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 102, Coverage: 10, minDepth: 5 [pilon] Confirmed 1023 of 1347 bases (75.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1285_length_1347_cov_2.453507:1-1347 [pilon] Processing NODE_12545_length_243_cov_28.377049:1-243 [pilon] NODE_6370_length_512_cov_29.358056:1-512 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 291, Coverage: 48, minDepth: 12 [pilon] Confirmed 371 of 512 bases (72.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6370_length_512_cov_29.358056:1-512 [pilon] Processing NODE_132_length_2809_cov_10.642485:1-2809 [pilon] NODE_573_length_1834_cov_1.593695:1-1834 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 96, Coverage: 7, minDepth: 5 [pilon] Confirmed 1030 of 1834 bases (56.16%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_573_length_1834_cov_1.593695:1-1834 [pilon] Processing NODE_9359_length_351_cov_28.234783:1-351 [pilon] NODE_10817_length_291_cov_32.664706:1-291 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 154, Coverage: 11, minDepth: 5 [pilon] Confirmed 183 of 291 bases (62.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_10422_length_307_cov_31.897849:1-307 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 118, Coverage: 8, minDepth: 5 [pilon] Confirmed 176 of 307 bases (57.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10817_length_291_cov_32.664706:1-291 [pilon] Finished processing NODE_10422_length_307_cov_31.897849:1-307 [pilon] Processing NODE_7948_length_420_cov_21.317726:1-420 [pilon] Processing NODE_11915_length_249_cov_13.601562:1-249 [pilon] NODE_10704_length_297_cov_24.522727:1-297 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 96, Coverage: 11, minDepth: 5 [pilon] Confirmed 244 of 297 bases (82.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10704_length_297_cov_24.522727:1-297 [pilon] Processing NODE_3962_length_719_cov_34.157191:1-719 [pilon] NODE_1916_length_1107_cov_14.504057:1-1107 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 310, Coverage: 26, minDepth: 7 [pilon] Confirmed 1012 of 1107 bases (91.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1916_length_1107_cov_14.504057:1-1107 [pilon] Processing NODE_5485_length_579_cov_0.591703:1-579 [pilon] NODE_13356_length_243_cov_19.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13356_length_243_cov_19.803279:1-243 [pilon] Processing NODE_6363_length_513_cov_1.298469:1-513 [pilon] NODE_320_length_2197_cov_1.812139:1-2197 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 134, Coverage: 8, minDepth: 5 [pilon] Confirmed 1397 of 2197 bases (63.59%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_320_length_2197_cov_1.812139:1-2197 [pilon] Processing NODE_1809_length_1144_cov_31.307918:1-1144 [pilon] NODE_10374_length_309_cov_34.414894:1-309 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 123, Coverage: 7, minDepth: 5 [pilon] Confirmed 151 of 309 bases (48.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10374_length_309_cov_34.414894:1-309 [pilon] Processing NODE_4747_length_639_cov_23.069498:1-639 [pilon] NODE_10083_length_321_cov_32.730000:1-321 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 109, Coverage: 8, minDepth: 5 [pilon] Confirmed 163 of 321 bases (50.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10083_length_321_cov_32.730000:1-321 [pilon] Processing NODE_10506_length_304_cov_20.251366:1-304 [pilon] NODE_2258_length_1019_cov_45.335189:1-1019 log: [pilon] frags shovill.bam: coverage 97 [pilon] Total Reads: 918, Coverage: 97, minDepth: 24 [pilon] Confirmed 921 of 1019 bases (90.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2258_length_1019_cov_45.335189:1-1019 [pilon] Processing NODE_14563_length_243_cov_9.795082:1-243 [pilon] NODE_8968_length_368_cov_20.906883:1-368 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 124, Coverage: 12, minDepth: 5 [pilon] Confirmed 301 of 368 bases (81.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8968_length_368_cov_20.906883:1-368 [pilon] Processing NODE_3466_length_789_cov_19.525449:1-789 [pilon] NODE_8800_length_377_cov_31.910156:1-377 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 191, Coverage: 34, minDepth: 9 [pilon] Confirmed 320 of 377 bases (84.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8800_length_377_cov_31.910156:1-377 [pilon] Processing NODE_8921_length_370_cov_11.811245:1-370 [pilon] NODE_10547_length_303_cov_15.010989:1-303 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 78, Coverage: 7, minDepth: 5 [pilon] Confirmed 189 of 303 bases (62.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10547_length_303_cov_15.010989:1-303 [pilon] Processing NODE_4843_length_631_cov_18.770588:1-631 [pilon] NODE_2278_length_1015_cov_23.448546:1-1015 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 534, Coverage: 47, minDepth: 12 [pilon] Confirmed 960 of 1015 bases (94.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2278_length_1015_cov_23.448546:1-1015 [pilon] Processing NODE_6489_length_504_cov_14.075718:1-504 [pilon] NODE_9948_length_327_cov_35.237864:1-327 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 125, Coverage: 6, minDepth: 5 [pilon] Confirmed 144 of 327 bases (44.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9948_length_327_cov_35.237864:1-327 [pilon] Processing NODE_6106_length_531_cov_23.370732:1-531 [pilon] NODE_2234_length_1024_cov_26.361019:1-1024 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 599, Coverage: 31, minDepth: 8 [pilon] Confirmed 848 of 1024 bases (82.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2234_length_1024_cov_26.361019:1-1024 [pilon] Processing NODE_13392_length_243_cov_19.377049:1-243 [pilon] NODE_14571_length_243_cov_9.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14571_length_243_cov_9.737705:1-243 [pilon] Processing NODE_7822_length_426_cov_17.226230:1-426 [pilon] NODE_10202_length_317_cov_22.663265:1-317 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 94, Coverage: 12, minDepth: 5 [pilon] Confirmed 253 of 317 bases (79.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10202_length_317_cov_22.663265:1-317 [pilon] Processing NODE_5283_length_594_cov_4.566596:1-594 [pilon] NODE_2667_length_934_cov_44.777368:1-934 log: [pilon] frags shovill.bam: coverage 92 [pilon] Total Reads: 804, Coverage: 92, minDepth: 23 [pilon] Confirmed 852 of 934 bases (91.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2667_length_934_cov_44.777368:1-934 [pilon] Processing NODE_15062_length_238_cov_57.769231:1-238 [pilon] NODE_8571_length_390_cov_11.260223:1-390 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 71, Coverage: 10, minDepth: 5 [pilon] Confirmed 320 of 390 bases (82.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8571_length_390_cov_11.260223:1-390 [pilon] Processing NODE_8222_length_407_cov_28.811189:1-407 [pilon] NODE_10581_length_302_cov_15.508287:1-302 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 302 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10581_length_302_cov_15.508287:1-302 [pilon] Processing NODE_3693_length_755_cov_23.878549:1-755 [pilon] NODE_2620_length_942_cov_21.841657:1-942 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 435, Coverage: 42, minDepth: 11 [pilon] Confirmed 728 of 942 bases (77.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2620_length_942_cov_21.841657:1-942 [pilon] Processing NODE_1479_length_1271_cov_2.338261:1-1271 [pilon] NODE_3058_length_861_cov_29.035135:1-861 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 493, Coverage: 67, minDepth: 17 [pilon] Confirmed 657 of 861 bases (76.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3058_length_861_cov_29.035135:1-861 [pilon] Processing NODE_13760_length_243_cov_15.967213:1-243 [pilon] NODE_386_length_2064_cov_29.700978:1-2064 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 1368, Coverage: 63, minDepth: 16 [pilon] Confirmed 1872 of 2064 bases (90.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_386_length_2064_cov_29.700978:1-2064 [pilon] Processing NODE_2038_length_1076_cov_27.946597:1-1076 [pilon] NODE_4138_length_700_cov_1.461140:1-700 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 33, Coverage: 6, minDepth: 5 [pilon] Confirmed 493 of 700 bases (70.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4138_length_700_cov_1.461140:1-700 [pilon] Processing NODE_14158_length_243_cov_13.032787:1-243 [pilon] NODE_1713_length_1177_cov_17.333333:1-1177 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 403, Coverage: 31, minDepth: 8 [pilon] Confirmed 1069 of 1177 bases (90.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1713_length_1177_cov_17.333333:1-1177 [pilon] Processing NODE_7938_length_421_cov_0.356667:1-421 [pilon] NODE_5485_length_579_cov_0.591703:1-579 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 62 of 579 bases (10.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5485_length_579_cov_0.591703:1-579 [pilon] Processing NODE_14414_length_243_cov_10.942623:1-243 [pilon] NODE_12545_length_243_cov_28.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12545_length_243_cov_28.377049:1-243 [pilon] NODE_9359_length_351_cov_28.234783:1-351 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 134, Coverage: 2, minDepth: 5 [pilon] Confirmed 113 of 351 bases (32.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_5077_length_612_cov_3.205703:1-612 [pilon] Finished processing NODE_9359_length_351_cov_28.234783:1-351 [pilon] Processing NODE_11862_length_251_cov_10.353846:1-251 [pilon] NODE_1809_length_1144_cov_31.307918:1-1144 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 694, Coverage: 69, minDepth: 17 [pilon] Confirmed 1045 of 1144 bases (91.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1809_length_1144_cov_31.307918:1-1144 [pilon] Processing NODE_4652_length_648_cov_4.907021:1-648 [pilon] NODE_3515_length_781_cov_14.330303:1-781 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 215, Coverage: 28, minDepth: 7 [pilon] Confirmed 653 of 781 bases (83.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3515_length_781_cov_14.330303:1-781 [pilon] Processing NODE_6499_length_504_cov_7.691906:1-504 [pilon] NODE_10506_length_304_cov_20.251366:1-304 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 79, Coverage: 6, minDepth: 5 [pilon] Confirmed 171 of 304 bases (56.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10506_length_304_cov_20.251366:1-304 [pilon] Processing NODE_7642_length_435_cov_34.493631:1-435 [pilon] NODE_7948_length_420_cov_21.317726:1-420 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 136, Coverage: 21, minDepth: 5 [pilon] Confirmed 314 of 420 bases (74.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7948_length_420_cov_21.317726:1-420 [pilon] Processing NODE_5276_length_594_cov_24.465116:1-594 [pilon] NODE_132_length_2809_cov_10.642485:1-2809 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 765, Coverage: 22, minDepth: 6 [pilon] Confirmed 2614 of 2809 bases (93.06%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_132_length_2809_cov_10.642485:1-2809 [pilon] Processing NODE_11830_length_252_cov_13.404580:1-252 [pilon] NODE_11915_length_249_cov_13.601562:1-249 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 42, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11915_length_249_cov_13.601562:1-249 [pilon] Processing NODE_4952_length_622_cov_14.628743:1-622 [pilon] NODE_3962_length_719_cov_34.157191:1-719 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 493, Coverage: 46, minDepth: 12 [pilon] Confirmed 471 of 719 bases (65.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3962_length_719_cov_34.157191:1-719 [pilon] Processing NODE_13798_length_243_cov_15.688525:1-243 [pilon] NODE_8921_length_370_cov_11.811245:1-370 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 74, Coverage: 5, minDepth: 5 [pilon] Confirmed 201 of 370 bases (54.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8921_length_370_cov_11.811245:1-370 [pilon] Processing NODE_8438_length_398_cov_6.166065:1-398 [pilon] NODE_6363_length_513_cov_1.298469:1-513 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 134 of 513 bases (26.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6363_length_513_cov_1.298469:1-513 [pilon] Processing NODE_7189_length_460_cov_22.094395:1-460 [pilon] NODE_14563_length_243_cov_9.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14563_length_243_cov_9.795082:1-243 [pilon] Processing NODE_6653_length_493_cov_28.908602:1-493 [pilon] NODE_4843_length_631_cov_18.770588:1-631 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 221, Coverage: 20, minDepth: 5 [pilon] Confirmed 522 of 631 bases (82.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4843_length_631_cov_18.770588:1-631 [pilon] Processing NODE_1843_length_1132_cov_10.526212:1-1132 [pilon] NODE_4747_length_639_cov_23.069498:1-639 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 325, Coverage: 49, minDepth: 12 [pilon] Confirmed 515 of 639 bases (80.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4747_length_639_cov_23.069498:1-639 [pilon] Processing NODE_8566_length_390_cov_12.724907:1-390 [pilon] NODE_3466_length_789_cov_19.525449:1-789 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 325, Coverage: 17, minDepth: 5 [pilon] Confirmed 630 of 789 bases (79.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3466_length_789_cov_19.525449:1-789 [pilon] Processing NODE_9792_length_334_cov_27.319249:1-334 [pilon] NODE_6489_length_504_cov_14.075718:1-504 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 143, Coverage: 16, minDepth: 5 [pilon] Confirmed 343 of 504 bases (68.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_6106_length_531_cov_23.370732:1-531 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 222, Coverage: 34, minDepth: 9 [pilon] Confirmed 391 of 531 bases (73.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6489_length_504_cov_14.075718:1-504 [pilon] Finished processing NODE_6106_length_531_cov_23.370732:1-531 [pilon] Processing NODE_7304_length_454_cov_1.627628:1-454 [pilon] Processing NODE_7937_length_421_cov_0.680000:1-421 [pilon] NODE_5283_length_594_cov_4.566596:1-594 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 48, Coverage: 11, minDepth: 5 [pilon] Confirmed 394 of 594 bases (66.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5283_length_594_cov_4.566596:1-594 [pilon] Processing NODE_12604_length_243_cov_27.557377:1-243 [pilon] NODE_15062_length_238_cov_57.769231:1-238 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 153, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 238 bases (54.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15062_length_238_cov_57.769231:1-238 [pilon] Processing NODE_13915_length_243_cov_14.786885:1-243 [pilon] NODE_13392_length_243_cov_19.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13392_length_243_cov_19.377049:1-243 [pilon] Processing NODE_14207_length_243_cov_12.540984:1-243 [pilon] NODE_7822_length_426_cov_17.226230:1-426 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 108, Coverage: 10, minDepth: 5 [pilon] Confirmed 252 of 426 bases (59.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7822_length_426_cov_17.226230:1-426 [pilon] Processing NODE_7675_length_434_cov_13.153355:1-434 [pilon] NODE_8222_length_407_cov_28.811189:1-407 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 182, Coverage: 16, minDepth: 5 [pilon] Confirmed 237 of 407 bases (58.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8222_length_407_cov_28.811189:1-407 [pilon] Processing NODE_10907_length_288_cov_17.179641:1-288 [pilon] NODE_3693_length_755_cov_23.878549:1-755 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 421, Coverage: 56, minDepth: 14 [pilon] Confirmed 631 of 755 bases (83.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3693_length_755_cov_23.878549:1-755 [pilon] Processing NODE_7599_length_438_cov_5.498423:1-438 [pilon] NODE_14414_length_243_cov_10.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14414_length_243_cov_10.942623:1-243 [pilon] Processing NODE_7900_length_423_cov_2.394040:1-423 [pilon] NODE_1479_length_1271_cov_2.338261:1-1271 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 71, Coverage: 7, minDepth: 5 [pilon] Confirmed 700 of 1271 bases (55.07%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_13760_length_243_cov_15.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1479_length_1271_cov_2.338261:1-1271 [pilon] Finished processing NODE_13760_length_243_cov_15.967213:1-243 [pilon] Processing NODE_2638_length_940_cov_3.844933:1-940 [pilon] Processing NODE_3183_length_835_cov_1.266106:1-835 [pilon] NODE_4652_length_648_cov_4.907021:1-648 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 64, Coverage: 13, minDepth: 5 [pilon] Confirmed 536 of 648 bases (82.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4652_length_648_cov_4.907021:1-648 [pilon] Processing NODE_9959_length_327_cov_21.519417:1-327 [pilon] NODE_7642_length_435_cov_34.493631:1-435 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 269, Coverage: 20, minDepth: 5 [pilon] Confirmed 207 of 435 bases (47.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7642_length_435_cov_34.493631:1-435 [pilon] Processing NODE_3677_length_758_cov_21.073783:1-758 [pilon] NODE_14158_length_243_cov_13.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14158_length_243_cov_13.032787:1-243 [pilon] NODE_7938_length_421_cov_0.356667:1-421 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 16 of 421 bases (3.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7938_length_421_cov_0.356667:1-421 [pilon] Processing NODE_3275_length_819_cov_3.223496:1-819 [pilon] Processing NODE_11228_length_274_cov_18.359477:1-274 [pilon] NODE_2038_length_1076_cov_27.946597:1-1076 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 676, Coverage: 58, minDepth: 15 [pilon] Confirmed 1018 of 1076 bases (94.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2038_length_1076_cov_27.946597:1-1076 [pilon] Processing NODE_7830_length_426_cov_4.852459:1-426 [pilon] NODE_11862_length_251_cov_10.353846:1-251 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 27, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 251 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11862_length_251_cov_10.353846:1-251 [pilon] Processing NODE_12478_length_243_cov_29.483607:1-243 [pilon] NODE_5077_length_612_cov_3.205703:1-612 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 41, Coverage: 9, minDepth: 5 [pilon] Confirmed 421 of 612 bases (68.79%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5077_length_612_cov_3.205703:1-612 [pilon] Processing NODE_109_length_2933_cov_11.557610:1-2933 [pilon] NODE_6499_length_504_cov_7.691906:1-504 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 87, Coverage: 3, minDepth: 5 [pilon] Confirmed 159 of 504 bases (31.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6499_length_504_cov_7.691906:1-504 [pilon] Processing NODE_4153_length_698_cov_32.010399:1-698 [pilon] NODE_5276_length_594_cov_24.465116:1-594 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 312, Coverage: 37, minDepth: 9 [pilon] Confirmed 390 of 594 bases (65.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5276_length_594_cov_24.465116:1-594 [pilon] Processing NODE_12989_length_243_cov_23.073770:1-243 [pilon] NODE_11830_length_252_cov_13.404580:1-252 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 44, Coverage: 6, minDepth: 5 [pilon] Confirmed 153 of 252 bases (60.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11830_length_252_cov_13.404580:1-252 [pilon] Processing NODE_14282_length_243_cov_11.983607:1-243 [pilon] NODE_13798_length_243_cov_15.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13798_length_243_cov_15.688525:1-243 [pilon] Processing NODE_7282_length_455_cov_31.871257:1-455 [pilon] NODE_4952_length_622_cov_14.628743:1-622 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 159, Coverage: 27, minDepth: 7 [pilon] Confirmed 461 of 622 bases (74.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4952_length_622_cov_14.628743:1-622 [pilon] Processing NODE_2457_length_976_cov_22.178947:1-976 [pilon] NODE_8438_length_398_cov_6.166065:1-398 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 50, Coverage: 3, minDepth: 5 [pilon] Confirmed 121 of 398 bases (30.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8438_length_398_cov_6.166065:1-398 [pilon] Processing NODE_1279_length_1350_cov_20.428804:1-1350 [pilon] NODE_8566_length_390_cov_12.724907:1-390 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 90, Coverage: 5, minDepth: 5 [pilon] Confirmed 166 of 390 bases (42.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8566_length_390_cov_12.724907:1-390 [pilon] Processing NODE_11246_length_273_cov_29.256579:1-273 [pilon] NODE_6653_length_493_cov_28.908602:1-493 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 238, Coverage: 31, minDepth: 8 [pilon] Confirmed 441 of 493 bases (89.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6653_length_493_cov_28.908602:1-493 [pilon] Processing NODE_6672_length_492_cov_21.951482:1-492 [pilon] NODE_7189_length_460_cov_22.094395:1-460 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 187, Coverage: 31, minDepth: 8 [pilon] Confirmed 396 of 460 bases (86.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7189_length_460_cov_22.094395:1-460 [pilon] Processing NODE_14609_length_243_cov_9.319672:1-243 [pilon] NODE_1843_length_1132_cov_10.526212:1-1132 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 289, Coverage: 25, minDepth: 6 [pilon] Confirmed 949 of 1132 bases (83.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1843_length_1132_cov_10.526212:1-1132 [pilon] Processing NODE_7235_length_458_cov_22.534125:1-458 [pilon] NODE_9959_length_327_cov_21.519417:1-327 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 94, Coverage: 5, minDepth: 5 [pilon] Confirmed 146 of 327 bases (44.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9959_length_327_cov_21.519417:1-327 [pilon] Processing NODE_948_length_1528_cov_29.526652:1-1528 [pilon] NODE_7937_length_421_cov_0.680000:1-421 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 421 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7937_length_421_cov_0.680000:1-421 [pilon] Processing NODE_2878_length_898_cov_8.756757:1-898 [pilon] NODE_7900_length_423_cov_2.394040:1-423 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 23, Coverage: 6, minDepth: 5 [pilon] Confirmed 220 of 423 bases (52.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7900_length_423_cov_2.394040:1-423 [pilon] Processing NODE_14259_length_243_cov_12.163934:1-243 [pilon] NODE_9792_length_334_cov_27.319249:1-334 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 121, Coverage: 11, minDepth: 5 [pilon] Confirmed 203 of 334 bases (60.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9792_length_334_cov_27.319249:1-334 [pilon] Processing NODE_10680_length_299_cov_10.752809:1-299 [pilon] NODE_3677_length_758_cov_21.073783:1-758 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 322, Coverage: 40, minDepth: 10 [pilon] Confirmed 691 of 758 bases (91.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3677_length_758_cov_21.073783:1-758 [pilon] Processing NODE_211_length_2469_cov_12.739779:1-2469 [pilon] NODE_13915_length_243_cov_14.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13915_length_243_cov_14.786885:1-243 [pilon] Processing NODE_5236_length_597_cov_40.468487:1-597 [pilon] NODE_12604_length_243_cov_27.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12604_length_243_cov_27.557377:1-243 [pilon] Processing NODE_13373_length_243_cov_19.614754:1-243 [pilon] NODE_10907_length_288_cov_17.179641:1-288 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 63, Coverage: 10, minDepth: 5 [pilon] Confirmed 228 of 288 bases (79.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10907_length_288_cov_17.179641:1-288 [pilon] Processing NODE_14339_length_243_cov_11.540984:1-243 [pilon] NODE_7304_length_454_cov_1.627628:1-454 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 230 of 454 bases (50.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7304_length_454_cov_1.627628:1-454 [pilon] Processing NODE_14460_length_243_cov_10.622951:1-243 [pilon] NODE_14207_length_243_cov_12.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14207_length_243_cov_12.540984:1-243 [pilon] Processing NODE_8776_length_378_cov_20.027237:1-378 [pilon] NODE_7599_length_438_cov_5.498423:1-438 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 48, Coverage: 11, minDepth: 5 [pilon] Confirmed 335 of 438 bases (76.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7599_length_438_cov_5.498423:1-438 [pilon] Processing NODE_11659_length_258_cov_12.335766:1-258 [pilon] NODE_7675_length_434_cov_13.153355:1-434 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 98, Coverage: 15, minDepth: 5 [pilon] Confirmed 309 of 434 bases (71.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7675_length_434_cov_13.153355:1-434 [pilon] Processing NODE_14238_length_243_cov_12.327869:1-243 [pilon] NODE_3183_length_835_cov_1.266106:1-835 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 346 of 835 bases (41.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3183_length_835_cov_1.266106:1-835 [pilon] Processing NODE_4313_length_679_cov_25.804659:1-679 [pilon] NODE_2638_length_940_cov_3.844933:1-940 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 117, Coverage: 8, minDepth: 5 [pilon] Confirmed 457 of 940 bases (48.62%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2638_length_940_cov_3.844933:1-940 [pilon] Processing NODE_2695_length_930_cov_13.943140:1-930 [pilon] NODE_11228_length_274_cov_18.359477:1-274 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 201 of 274 bases (73.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11228_length_274_cov_18.359477:1-274 [pilon] Processing NODE_10036_length_324_cov_14.443350:1-324 [pilon] NODE_3275_length_819_cov_3.223496:1-819 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 59, Coverage: 9, minDepth: 5 [pilon] Confirmed 697 of 819 bases (85.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3275_length_819_cov_3.223496:1-819 [pilon] Processing NODE_3484_length_787_cov_20.060060:1-787 [pilon] NODE_12478_length_243_cov_29.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12478_length_243_cov_29.483607:1-243 [pilon] Processing NODE_11006_length_284_cov_20.595092:1-284 [pilon] NODE_7830_length_426_cov_4.852459:1-426 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 31, Coverage: 9, minDepth: 5 [pilon] Confirmed 299 of 426 bases (70.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7830_length_426_cov_4.852459:1-426 [pilon] Processing NODE_11077_length_280_cov_16.704403:1-280 [pilon] NODE_109_length_2933_cov_11.557610:1-2933 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 851, Coverage: 29, minDepth: 7 [pilon] Confirmed 2383 of 2933 bases (81.25%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_109_length_2933_cov_11.557610:1-2933 [pilon] Processing NODE_14919_length_243_cov_6.500000:1-243 [pilon] NODE_14282_length_243_cov_11.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14282_length_243_cov_11.983607:1-243 [pilon] Processing NODE_342_length_2135_cov_19.872393:1-2135 [pilon] NODE_7282_length_455_cov_31.871257:1-455 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 258, Coverage: 45, minDepth: 11 [pilon] Confirmed 341 of 455 bases (74.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7282_length_455_cov_31.871257:1-455 [pilon] Processing NODE_3362_length_803_cov_3.473607:1-803 [pilon] NODE_4153_length_698_cov_32.010399:1-698 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 408, Coverage: 37, minDepth: 9 [pilon] Confirmed 550 of 698 bases (78.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4153_length_698_cov_32.010399:1-698 [pilon] Processing NODE_5685_length_564_cov_13.444695:1-564 [pilon] NODE_12989_length_243_cov_23.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12989_length_243_cov_23.073770:1-243 [pilon] Processing NODE_15209_length_155_cov_46.058824:1-155 [pilon] NODE_948_length_1528_cov_29.526652:1-1528 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 966, Coverage: 74, minDepth: 19 [pilon] Confirmed 1289 of 1528 bases (84.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_948_length_1528_cov_29.526652:1-1528 [pilon] Processing NODE_44_length_3808_cov_11.535666:1-3808 [pilon] NODE_14259_length_243_cov_12.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14259_length_243_cov_12.163934:1-243 [pilon] Processing NODE_2315_length_1007_cov_17.783296:1-1007 [pilon] NODE_2457_length_976_cov_22.178947:1-976 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 498, Coverage: 52, minDepth: 13 [pilon] Confirmed 578 of 976 bases (59.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2457_length_976_cov_22.178947:1-976 [pilon] Processing NODE_2707_length_928_cov_6.758364:1-928 [pilon] NODE_211_length_2469_cov_12.739779:1-2469 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 694, Coverage: 36, minDepth: 9 [pilon] Confirmed 2077 of 2469 bases (84.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_211_length_2469_cov_12.739779:1-2469 [pilon] Processing NODE_10793_length_294_cov_7.109827:1-294 [pilon] NODE_1279_length_1350_cov_20.428804:1-1350 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 607, Coverage: 34, minDepth: 9 [pilon] Confirmed 1036 of 1350 bases (76.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1279_length_1350_cov_20.428804:1-1350 [pilon] Processing NODE_6314_length_516_cov_32.463291:1-516 [pilon] NODE_11246_length_273_cov_29.256579:1-273 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 92, Coverage: 16, minDepth: 5 [pilon] Confirmed 242 of 273 bases (88.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11246_length_273_cov_29.256579:1-273 [pilon] Processing NODE_13912_length_243_cov_14.795082:1-243 [pilon] NODE_14609_length_243_cov_9.319672:1-243 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 27, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14609_length_243_cov_9.319672:1-243 [pilon] Processing NODE_13167_length_243_cov_21.377049:1-243 [pilon] NODE_7235_length_458_cov_22.534125:1-458 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 178, Coverage: 21, minDepth: 5 [pilon] Confirmed 375 of 458 bases (81.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7235_length_458_cov_22.534125:1-458 [pilon] Processing NODE_2083_length_1063_cov_18.505308:1-1063 [pilon] NODE_2878_length_898_cov_8.756757:1-898 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 164, Coverage: 18, minDepth: 5 [pilon] Confirmed 744 of 898 bases (82.85%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2878_length_898_cov_8.756757:1-898 [pilon] Processing NODE_12866_length_243_cov_24.336066:1-243 [pilon] NODE_6672_length_492_cov_21.951482:1-492 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 195, Coverage: 30, minDepth: 8 [pilon] Confirmed 409 of 492 bases (83.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6672_length_492_cov_21.951482:1-492 [pilon] Processing NODE_7734_length_430_cov_60.317152:1-430 [pilon] NODE_10680_length_299_cov_10.752809:1-299 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 49, Coverage: 6, minDepth: 5 [pilon] Confirmed 162 of 299 bases (54.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10680_length_299_cov_10.752809:1-299 [pilon] Processing NODE_13955_length_243_cov_14.467213:1-243 [pilon] NODE_5236_length_597_cov_40.468487:1-597 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 433, Coverage: 50, minDepth: 13 [pilon] Confirmed 538 of 597 bases (90.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5236_length_597_cov_40.468487:1-597 [pilon] Processing NODE_8538_length_392_cov_20.616236:1-392 [pilon] NODE_13373_length_243_cov_19.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13373_length_243_cov_19.614754:1-243 [pilon] Processing NODE_8184_length_409_cov_3.496528:1-409 [pilon] NODE_11659_length_258_cov_12.335766:1-258 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 45, Coverage: 6, minDepth: 5 [pilon] Confirmed 144 of 258 bases (55.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11659_length_258_cov_12.335766:1-258 [pilon] Processing NODE_5320_length_591_cov_4.455319:1-591 [pilon] NODE_14339_length_243_cov_11.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14339_length_243_cov_11.540984:1-243 [pilon] Processing NODE_1599_length_1218_cov_17.463081:1-1218 [pilon] NODE_14460_length_243_cov_10.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14460_length_243_cov_10.622951:1-243 [pilon] Processing NODE_6950_length_474_cov_17.243626:1-474 [pilon] NODE_8776_length_378_cov_20.027237:1-378 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 119, Coverage: 12, minDepth: 5 [pilon] Confirmed 205 of 378 bases (54.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8776_length_378_cov_20.027237:1-378 [pilon] Processing NODE_13371_length_243_cov_19.631148:1-243 [pilon] NODE_14238_length_243_cov_12.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14238_length_243_cov_12.327869:1-243 [pilon] Processing NODE_6440_length_507_cov_23.531088:1-507 [pilon] NODE_4313_length_679_cov_25.804659:1-679 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 381, Coverage: 49, minDepth: 12 [pilon] Confirmed 437 of 679 bases (64.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4313_length_679_cov_25.804659:1-679 [pilon] Processing NODE_10824_length_291_cov_25.541176:1-291 [pilon] NODE_2695_length_930_cov_13.943140:1-930 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 296, Coverage: 25, minDepth: 6 [pilon] Confirmed 647 of 930 bases (69.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2695_length_930_cov_13.943140:1-930 [pilon] Processing NODE_1534_length_1247_cov_3.531972:1-1247 [pilon] NODE_10036_length_324_cov_14.443350:1-324 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 72, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 324 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10036_length_324_cov_14.443350:1-324 [pilon] Processing NODE_12493_length_243_cov_29.196721:1-243 [pilon] NODE_10793_length_294_cov_7.109827:1-294 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 29, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 294 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10793_length_294_cov_7.109827:1-294 [pilon] Processing NODE_11763_length_255_cov_13.246269:1-255 [pilon] NODE_3484_length_787_cov_20.060060:1-787 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 335, Coverage: 35, minDepth: 9 [pilon] Confirmed 659 of 787 bases (83.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3484_length_787_cov_20.060060:1-787 [pilon] Processing NODE_6660_length_493_cov_5.120968:1-493 [pilon] NODE_2315_length_1007_cov_17.783296:1-1007 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 356, Coverage: 27, minDepth: 7 [pilon] Confirmed 902 of 1007 bases (89.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2315_length_1007_cov_17.783296:1-1007 [pilon] Processing NODE_2116_length_1055_cov_10.929336:1-1055 [pilon] NODE_44_length_3808_cov_11.535666:1-3808 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 1034, Coverage: 32, minDepth: 8 [pilon] Confirmed 2505 of 3808 bases (65.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_44_length_3808_cov_11.535666:1-3808 [pilon] Processing NODE_7158_length_462_cov_11.219941:1-462 [pilon] NODE_14919_length_243_cov_6.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14919_length_243_cov_6.500000:1-243 [pilon] Processing NODE_7349_length_450_cov_30.382979:1-450 [pilon] NODE_11006_length_284_cov_20.595092:1-284 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 59, Coverage: 5, minDepth: 5 [pilon] Confirmed 146 of 284 bases (51.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11006_length_284_cov_20.595092:1-284 [pilon] Processing NODE_11117_length_279_cov_15.113924:1-279 [pilon] NODE_11077_length_280_cov_16.704403:1-280 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 55, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 280 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11077_length_280_cov_16.704403:1-280 [pilon] Processing NODE_10022_length_324_cov_23.433498:1-324 [pilon] NODE_3362_length_803_cov_3.473607:1-803 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 62, Coverage: 10, minDepth: 5 [pilon] Confirmed 515 of 803 bases (64.13%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3362_length_803_cov_3.473607:1-803 [pilon] Processing NODE_14780_length_243_cov_7.918033:1-243 [pilon] NODE_342_length_2135_cov_19.872393:1-2135 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 893, Coverage: 32, minDepth: 8 [pilon] Confirmed 1587 of 2135 bases (74.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_342_length_2135_cov_19.872393:1-2135 [pilon] NODE_15209_length_155_cov_46.058824:1-155 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 34, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 155 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15209_length_155_cov_46.058824:1-155 [pilon] Processing NODE_6883_length_479_cov_1.103352:1-479 [pilon] Processing NODE_9599_length_342_cov_13.239819:1-342 [pilon] NODE_5685_length_564_cov_13.444695:1-564 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 151, Coverage: 15, minDepth: 5 [pilon] Confirmed 446 of 564 bases (79.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5685_length_564_cov_13.444695:1-564 [pilon] Processing NODE_8830_length_375_cov_24.074803:1-375 [pilon] NODE_2707_length_928_cov_6.758364:1-928 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 145, Coverage: 8, minDepth: 5 [pilon] Confirmed 602 of 928 bases (64.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2707_length_928_cov_6.758364:1-928 [pilon] Processing NODE_4144_length_699_cov_24.588235:1-699 [pilon] NODE_6314_length_516_cov_32.463291:1-516 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 293, Coverage: 46, minDepth: 12 [pilon] Confirmed 445 of 516 bases (86.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6314_length_516_cov_32.463291:1-516 [pilon] Processing NODE_10964_length_285_cov_20.573171:1-285 [pilon] NODE_13167_length_243_cov_21.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13167_length_243_cov_21.377049:1-243 [pilon] Processing NODE_11364_length_269_cov_15.391892:1-269 [pilon] NODE_13912_length_243_cov_14.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13912_length_243_cov_14.795082:1-243 [pilon] Processing NODE_6032_length_538_cov_2.079137:1-538 [pilon] NODE_2083_length_1063_cov_18.505308:1-1063 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 402, Coverage: 38, minDepth: 10 [pilon] Confirmed 981 of 1063 bases (92.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2083_length_1063_cov_18.505308:1-1063 [pilon] Processing NODE_6779_length_484_cov_51.749311:1-484 [pilon] NODE_12866_length_243_cov_24.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12866_length_243_cov_24.336066:1-243 [pilon] Processing NODE_7423_length_447_cov_8.503067:1-447 [pilon] NODE_7734_length_430_cov_60.317152:1-430 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 427, Coverage: 73, minDepth: 18 [pilon] Confirmed 374 of 430 bases (86.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7734_length_430_cov_60.317152:1-430 [pilon] Processing NODE_4929_length_624_cov_2.646123:1-624 [pilon] NODE_13955_length_243_cov_14.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13955_length_243_cov_14.467213:1-243 [pilon] Processing NODE_931_length_1540_cov_18.535588:1-1540 [pilon] NODE_8538_length_392_cov_20.616236:1-392 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 121, Coverage: 16, minDepth: 5 [pilon] Confirmed 279 of 392 bases (71.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8538_length_392_cov_20.616236:1-392 [pilon] Processing NODE_3301_length_815_cov_2.354467:1-815 [pilon] NODE_11763_length_255_cov_13.246269:1-255 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 42, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11763_length_255_cov_13.246269:1-255 [pilon] Processing NODE_11875_length_250_cov_5.906977:1-250 [pilon] NODE_5320_length_591_cov_4.455319:1-591 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 71, Coverage: 15, minDepth: 5 [pilon] Confirmed 468 of 591 bases (79.19%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5320_length_591_cov_4.455319:1-591 [pilon] Processing NODE_3500_length_783_cov_25.714502:1-783 [pilon] NODE_8184_length_409_cov_3.496528:1-409 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 29, Coverage: 9, minDepth: 5 [pilon] Confirmed 304 of 409 bases (74.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8184_length_409_cov_3.496528:1-409 [pilon] Processing NODE_8651_length_385_cov_13.007576:1-385 [pilon] NODE_1599_length_1218_cov_17.463081:1-1218 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 442, Coverage: 27, minDepth: 7 [pilon] Confirmed 1178 of 1218 bases (96.72%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1599_length_1218_cov_17.463081:1-1218 [pilon] Processing NODE_8045_length_416_cov_0.932203:1-416 [pilon] NODE_7158_length_462_cov_11.219941:1-462 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 99, Coverage: 7, minDepth: 5 [pilon] Confirmed 225 of 462 bases (48.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7158_length_462_cov_11.219941:1-462 [pilon] Processing NODE_11644_length_258_cov_16.759124:1-258 [pilon] NODE_2116_length_1055_cov_10.929336:1-1055 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 335, Coverage: 36, minDepth: 9 [pilon] Confirmed 744 of 1055 bases (70.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2116_length_1055_cov_10.929336:1-1055 [pilon] Processing NODE_6609_length_497_cov_1.593085:1-497 [pilon] NODE_6950_length_474_cov_17.243626:1-474 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 169, Coverage: 12, minDepth: 5 [pilon] Confirmed 216 of 474 bases (45.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6950_length_474_cov_17.243626:1-474 [pilon] Processing NODE_10436_length_307_cov_3.123656:1-307 [pilon] NODE_10824_length_291_cov_25.541176:1-291 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 95, Coverage: 5, minDepth: 5 [pilon] Confirmed 161 of 291 bases (55.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10824_length_291_cov_25.541176:1-291 [pilon] Processing NODE_10756_length_295_cov_11.718391:1-295 [pilon] NODE_13371_length_243_cov_19.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13371_length_243_cov_19.631148:1-243 [pilon] Processing NODE_7777_length_429_cov_1.418831:1-429 [pilon] NODE_1534_length_1247_cov_3.531972:1-1247 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 86, Coverage: 9, minDepth: 5 [pilon] Confirmed 1025 of 1247 bases (82.20%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1534_length_1247_cov_3.531972:1-1247 [pilon] Processing NODE_8653_length_384_cov_57.901141:1-384 [pilon] NODE_6440_length_507_cov_23.531088:1-507 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 187, Coverage: 28, minDepth: 7 [pilon] Confirmed 406 of 507 bases (80.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6440_length_507_cov_23.531088:1-507 [pilon] Processing NODE_1375_length_1308_cov_1.978096:1-1308 [pilon] NODE_12493_length_243_cov_29.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12493_length_243_cov_29.196721:1-243 [pilon] Processing NODE_10499_length_304_cov_32.027322:1-304 [pilon] NODE_11117_length_279_cov_15.113924:1-279 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 53, Coverage: 3, minDepth: 5 [pilon] Confirmed 88 of 279 bases (31.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11117_length_279_cov_15.113924:1-279 [pilon] Processing NODE_9249_length_356_cov_11.578723:1-356 [pilon] NODE_6660_length_493_cov_5.120968:1-493 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 52, Coverage: 13, minDepth: 5 [pilon] Confirmed 400 of 493 bases (81.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6660_length_493_cov_5.120968:1-493 [pilon] Processing NODE_7274_length_456_cov_9.313433:1-456 [pilon] NODE_14780_length_243_cov_7.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14780_length_243_cov_7.918033:1-243 [pilon] Processing NODE_7354_length_450_cov_21.170213:1-450 [pilon] NODE_10022_length_324_cov_23.433498:1-324 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 71, Coverage: 3, minDepth: 5 [pilon] Confirmed 111 of 324 bases (34.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10022_length_324_cov_23.433498:1-324 [pilon] Processing NODE_5659_length_566_cov_10.177528:1-566 [pilon] NODE_7349_length_450_cov_30.382979:1-450 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 210, Coverage: 33, minDepth: 8 [pilon] Confirmed 375 of 450 bases (83.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7349_length_450_cov_30.382979:1-450 [pilon] Processing NODE_11179_length_276_cov_22.103226:1-276 [pilon] NODE_6883_length_479_cov_1.103352:1-479 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 149 of 479 bases (31.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6883_length_479_cov_1.103352:1-479 [pilon] Processing NODE_486_length_1923_cov_24.327414:1-1923 [pilon] NODE_9599_length_342_cov_13.239819:1-342 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 59, Coverage: 10, minDepth: 5 [pilon] Confirmed 274 of 342 bases (80.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9599_length_342_cov_13.239819:1-342 [pilon] Processing NODE_12559_length_243_cov_28.155738:1-243 [pilon] NODE_8830_length_375_cov_24.074803:1-375 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 145, Coverage: 17, minDepth: 5 [pilon] Confirmed 277 of 375 bases (73.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8830_length_375_cov_24.074803:1-375 [pilon] Processing NODE_6714_length_489_cov_19.448370:1-489 [pilon] NODE_4144_length_699_cov_24.588235:1-699 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 362, Coverage: 41, minDepth: 10 [pilon] Confirmed 567 of 699 bases (81.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4144_length_699_cov_24.588235:1-699 [pilon] Processing NODE_1817_length_1141_cov_16.300980:1-1141 [pilon] NODE_11875_length_250_cov_5.906977:1-250 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 19, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 250 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11875_length_250_cov_5.906977:1-250 [pilon] Processing NODE_5618_length_569_cov_11.265625:1-569 [pilon] NODE_11644_length_258_cov_16.759124:1-258 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 51, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11644_length_258_cov_16.759124:1-258 [pilon] Processing NODE_6830_length_481_cov_19.052778:1-481 [pilon] NODE_11364_length_269_cov_15.391892:1-269 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 51, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 269 bases (48.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11364_length_269_cov_15.391892:1-269 [pilon] Processing NODE_12949_length_243_cov_23.418033:1-243 [pilon] NODE_10964_length_285_cov_20.573171:1-285 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 71, Coverage: 10, minDepth: 5 [pilon] Confirmed 213 of 285 bases (74.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10964_length_285_cov_20.573171:1-285 [pilon] Processing NODE_10763_length_294_cov_40.549133:1-294 [pilon] NODE_6032_length_538_cov_2.079137:1-538 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 365 of 538 bases (67.84%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6032_length_538_cov_2.079137:1-538 [pilon] Processing NODE_3715_length_753_cov_3.180380:1-753 [pilon] NODE_6779_length_484_cov_51.749311:1-484 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 423, Coverage: 67, minDepth: 17 [pilon] Confirmed 424 of 484 bases (87.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6779_length_484_cov_51.749311:1-484 [pilon] Processing NODE_10745_length_296_cov_9.811429:1-296 [pilon] NODE_6609_length_497_cov_1.593085:1-497 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 28, Coverage: 5, minDepth: 5 [pilon] Confirmed 283 of 497 bases (56.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6609_length_497_cov_1.593085:1-497 [pilon] Processing NODE_7582_length_438_cov_28.968454:1-438 [pilon] NODE_4929_length_624_cov_2.646123:1-624 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 373 of 624 bases (59.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4929_length_624_cov_2.646123:1-624 [pilon] Processing NODE_12653_length_243_cov_26.836066:1-243 [pilon] NODE_7423_length_447_cov_8.503067:1-447 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 61, Coverage: 11, minDepth: 5 [pilon] Confirmed 353 of 447 bases (78.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7423_length_447_cov_8.503067:1-447 [pilon] Processing NODE_9531_length_345_cov_12.196429:1-345 [pilon] NODE_3301_length_815_cov_2.354467:1-815 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 44, Coverage: 7, minDepth: 5 [pilon] Confirmed 434 of 815 bases (53.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3301_length_815_cov_2.354467:1-815 [pilon] Processing NODE_12832_length_243_cov_24.762295:1-243 [pilon] NODE_931_length_1540_cov_18.535588:1-1540 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 613, Coverage: 48, minDepth: 12 [pilon] Confirmed 1140 of 1540 bases (74.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_931_length_1540_cov_18.535588:1-1540 [pilon] Processing NODE_3263_length_821_cov_12.252857:1-821 [pilon] NODE_8651_length_385_cov_13.007576:1-385 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 111, Coverage: 5, minDepth: 5 [pilon] Confirmed 202 of 385 bases (52.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8651_length_385_cov_13.007576:1-385 [pilon] Processing NODE_15085_length_231_cov_7.581818:1-231 [pilon] NODE_3500_length_783_cov_25.714502:1-783 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 370, Coverage: 47, minDepth: 12 [pilon] Confirmed 646 of 783 bases (82.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3500_length_783_cov_25.714502:1-783 [pilon] Processing NODE_3941_length_722_cov_21.527454:1-722 [pilon] NODE_8045_length_416_cov_0.932203:1-416 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 416 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8045_length_416_cov_0.932203:1-416 [pilon] Processing NODE_3680_length_758_cov_1.510204:1-758 [pilon] NODE_10756_length_295_cov_11.718391:1-295 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 43, Coverage: 3, minDepth: 5 [pilon] Confirmed 90 of 295 bases (30.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10756_length_295_cov_11.718391:1-295 [pilon] Processing NODE_2808_length_908_cov_12.790343:1-908 [pilon] NODE_7777_length_429_cov_1.418831:1-429 log: [pilon] NODE_10436_length_307_cov_3.123656:1-307 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 307 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10436_length_307_cov_3.123656:1-307 [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 16, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 429 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7777_length_429_cov_1.418831:1-429 [pilon] Processing NODE_4902_length_626_cov_14.384158:1-626 [pilon] Processing NODE_3545_length_778_cov_2.324201:1-778 [pilon] NODE_12559_length_243_cov_28.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12559_length_243_cov_28.155738:1-243 [pilon] Processing NODE_3234_length_827_cov_19.631728:1-827 [pilon] NODE_8653_length_384_cov_57.901141:1-384 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 350, Coverage: 55, minDepth: 14 [pilon] Confirmed 339 of 384 bases (88.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8653_length_384_cov_57.901141:1-384 [pilon] Processing NODE_11779_length_254_cov_8.165414:1-254 [pilon] NODE_9249_length_356_cov_11.578723:1-356 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 58, Coverage: 5, minDepth: 5 [pilon] Confirmed 230 of 356 bases (64.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9249_length_356_cov_11.578723:1-356 [pilon] Processing NODE_8318_length_403_cov_57.010638:1-403 [pilon] NODE_1375_length_1308_cov_1.978096:1-1308 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 63, Coverage: 6, minDepth: 5 [pilon] Confirmed 662 of 1308 bases (50.61%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1375_length_1308_cov_1.978096:1-1308 [pilon] Processing NODE_9998_length_325_cov_23.490196:1-325 [pilon] NODE_10499_length_304_cov_32.027322:1-304 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 118, Coverage: 17, minDepth: 5 [pilon] Confirmed 263 of 304 bases (86.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10499_length_304_cov_32.027322:1-304 [pilon] Processing NODE_7976_length_419_cov_24.624161:1-419 [pilon] NODE_7354_length_450_cov_21.170213:1-450 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 163, Coverage: 25, minDepth: 6 [pilon] Confirmed 405 of 450 bases (90.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7354_length_450_cov_21.170213:1-450 [pilon] Processing NODE_8495_length_394_cov_19.124542:1-394 [pilon] NODE_5659_length_566_cov_10.177528:1-566 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 131, Coverage: 12, minDepth: 5 [pilon] Confirmed 472 of 566 bases (83.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5659_length_566_cov_10.177528:1-566 [pilon] Processing NODE_7335_length_451_cov_40.796970:1-451 [pilon] NODE_6830_length_481_cov_19.052778:1-481 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 168, Coverage: 27, minDepth: 7 [pilon] Confirmed 399 of 481 bases (82.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6830_length_481_cov_19.052778:1-481 [pilon] Processing NODE_4434_length_667_cov_46.734432:1-667 [pilon] NODE_7274_length_456_cov_9.313433:1-456 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 92, Coverage: 12, minDepth: 5 [pilon] Confirmed 303 of 456 bases (66.45%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7274_length_456_cov_9.313433:1-456 [pilon] Processing NODE_2527_length_962_cov_0.784780:1-962 [pilon] NODE_11179_length_276_cov_22.103226:1-276 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 84, Coverage: 8, minDepth: 5 [pilon] Confirmed 220 of 276 bases (79.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11179_length_276_cov_22.103226:1-276 [pilon] Processing NODE_9396_length_350_cov_60.855895:1-350 [pilon] NODE_486_length_1923_cov_24.327414:1-1923 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 1082, Coverage: 65, minDepth: 16 [pilon] Confirmed 1700 of 1923 bases (88.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_486_length_1923_cov_24.327414:1-1923 [pilon] Processing NODE_11542_length_262_cov_21.170213:1-262 [pilon] NODE_7582_length_438_cov_28.968454:1-438 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 206, Coverage: 37, minDepth: 9 [pilon] Confirmed 377 of 438 bases (86.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7582_length_438_cov_28.968454:1-438 [pilon] Processing NODE_5025_length_617_cov_3.556452:1-617 [pilon] NODE_6714_length_489_cov_19.448370:1-489 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 155, Coverage: 22, minDepth: 6 [pilon] Confirmed 328 of 489 bases (67.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6714_length_489_cov_19.448370:1-489 [pilon] Processing NODE_6057_length_535_cov_17.159420:1-535 [pilon] NODE_5618_length_569_cov_11.265625:1-569 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 243, Coverage: 42, minDepth: 11 [pilon] Confirmed 441 of 569 bases (77.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5618_length_569_cov_11.265625:1-569 [pilon] Processing NODE_4290_length_682_cov_31.966132:1-682 [pilon] NODE_1817_length_1141_cov_16.300980:1-1141 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 397, Coverage: 36, minDepth: 9 [pilon] Confirmed 1018 of 1141 bases (89.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1817_length_1141_cov_16.300980:1-1141 [pilon] Processing NODE_2897_length_893_cov_14.066062:1-893 [pilon] NODE_12949_length_243_cov_23.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12949_length_243_cov_23.418033:1-243 [pilon] Processing NODE_1928_length_1104_cov_24.482197:1-1104 [pilon] NODE_3715_length_753_cov_3.180380:1-753 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 62, Coverage: 11, minDepth: 5 [pilon] Confirmed 631 of 753 bases (83.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3715_length_753_cov_3.180380:1-753 [pilon] Processing NODE_9855_length_332_cov_18.563981:1-332 [pilon] NODE_10763_length_294_cov_40.549133:1-294 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 138, Coverage: 19, minDepth: 5 [pilon] Confirmed 243 of 294 bases (82.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10763_length_294_cov_40.549133:1-294 [pilon] Processing NODE_11191_length_276_cov_16.316129:1-276 [pilon] NODE_12653_length_243_cov_26.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12653_length_243_cov_26.836066:1-243 [pilon] Processing NODE_10551_length_303_cov_12.560440:1-303 [pilon] NODE_10745_length_296_cov_9.811429:1-296 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 37, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 296 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10745_length_296_cov_9.811429:1-296 [pilon] Processing NODE_13606_length_243_cov_17.450820:1-243 [pilon] NODE_15085_length_231_cov_7.581818:1-231 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 231 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15085_length_231_cov_7.581818:1-231 [pilon] Processing NODE_13238_length_243_cov_20.745902:1-243 [pilon] NODE_9531_length_345_cov_12.196429:1-345 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 59, Coverage: 6, minDepth: 5 [pilon] Confirmed 216 of 345 bases (62.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9531_length_345_cov_12.196429:1-345 [pilon] Processing NODE_9494_length_345_cov_37.669643:1-345 [pilon] NODE_3234_length_827_cov_19.631728:1-827 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 323, Coverage: 35, minDepth: 9 [pilon] Confirmed 549 of 827 bases (66.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3234_length_827_cov_19.631728:1-827 [pilon] Processing NODE_1803_length_1146_cov_15.955122:1-1146 [pilon] NODE_3941_length_722_cov_21.527454:1-722 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 284, Coverage: 25, minDepth: 6 [pilon] Confirmed 590 of 722 bases (81.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3941_length_722_cov_21.527454:1-722 [pilon] Processing NODE_11078_length_280_cov_14.849057:1-280 [pilon] NODE_3263_length_821_cov_12.252857:1-821 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 261, Coverage: 20, minDepth: 5 [pilon] Confirmed 602 of 821 bases (73.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3263_length_821_cov_12.252857:1-821 [pilon] Processing NODE_1927_length_1104_cov_27.935910:1-1104 [pilon] NODE_12832_length_243_cov_24.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12832_length_243_cov_24.762295:1-243 [pilon] Processing NODE_1796_length_1148_cov_1.700097:1-1148 [pilon] NODE_3680_length_758_cov_1.510204:1-758 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 50, Coverage: 7, minDepth: 5 [pilon] Confirmed 621 of 758 bases (81.93%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3680_length_758_cov_1.510204:1-758 [pilon] Processing NODE_10179_length_318_cov_15.274112:1-318 [pilon] NODE_4434_length_667_cov_46.734432:1-667 log: [pilon] frags shovill.bam: coverage 87 [pilon] Total Reads: 576, Coverage: 87, minDepth: 22 [pilon] Confirmed 590 of 667 bases (88.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4434_length_667_cov_46.734432:1-667 [pilon] Processing NODE_13883_length_243_cov_15.024590:1-243 [pilon] NODE_2808_length_908_cov_12.790343:1-908 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 294, Coverage: 25, minDepth: 6 [pilon] Confirmed 770 of 908 bases (84.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2808_length_908_cov_12.790343:1-908 [pilon] Processing NODE_9375_length_351_cov_18.121739:1-351 [pilon] NODE_3545_length_778_cov_2.324201:1-778 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 47, Coverage: 8, minDepth: 5 [pilon] Confirmed 437 of 778 bases (56.17%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3545_length_778_cov_2.324201:1-778 [pilon] Processing NODE_7710_length_432_cov_14.723473:1-432 [pilon] NODE_11779_length_254_cov_8.165414:1-254 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 254 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11779_length_254_cov_8.165414:1-254 [pilon] Processing NODE_1035_length_1477_cov_20.870944:1-1477 [pilon] NODE_4902_length_626_cov_14.384158:1-626 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 149, Coverage: 21, minDepth: 5 [pilon] Confirmed 561 of 626 bases (89.62%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4902_length_626_cov_14.384158:1-626 [pilon] Processing NODE_9554_length_344_cov_13.197309:1-344 [pilon] NODE_5025_length_617_cov_3.556452:1-617 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 48, Coverage: 10, minDepth: 5 [pilon] Confirmed 463 of 617 bases (75.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5025_length_617_cov_3.556452:1-617 [pilon] Processing NODE_712_length_1695_cov_24.520330:1-1695 [pilon] NODE_7976_length_419_cov_24.624161:1-419 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 161, Coverage: 29, minDepth: 7 [pilon] Confirmed 344 of 419 bases (82.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7976_length_419_cov_24.624161:1-419 [pilon] Processing NODE_7690_length_433_cov_0.689103:1-433 [pilon] NODE_2527_length_962_cov_0.784780:1-962 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 26, Coverage: 4, minDepth: 5 [pilon] Confirmed 259 of 962 bases (26.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2527_length_962_cov_0.784780:1-962 [pilon] Processing NODE_11128_length_279_cov_9.462025:1-279 [pilon] NODE_8495_length_394_cov_19.124542:1-394 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 125, Coverage: 15, minDepth: 5 [pilon] Confirmed 283 of 394 bases (71.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8495_length_394_cov_19.124542:1-394 [pilon] Processing NODE_9538_length_345_cov_10.647321:1-345 [pilon] NODE_8318_length_403_cov_57.010638:1-403 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 364, Coverage: 57, minDepth: 14 [pilon] Confirmed 362 of 403 bases (89.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8318_length_403_cov_57.010638:1-403 [pilon] Processing NODE_7560_length_440_cov_28.927900:1-440 [pilon] NODE_9998_length_325_cov_23.490196:1-325 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 101, Coverage: 11, minDepth: 5 [pilon] Confirmed 236 of 325 bases (72.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9998_length_325_cov_23.490196:1-325 [pilon] Processing NODE_4494_length_662_cov_14.711645:1-662 [pilon] NODE_11542_length_262_cov_21.170213:1-262 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 65, Coverage: 9, minDepth: 5 [pilon] Confirmed 229 of 262 bases (87.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11542_length_262_cov_21.170213:1-262 [pilon] Processing NODE_3595_length_770_cov_0.833590:1-770 [pilon] NODE_9396_length_350_cov_60.855895:1-350 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 298, Coverage: 42, minDepth: 11 [pilon] Confirmed 317 of 350 bases (90.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9396_length_350_cov_60.855895:1-350 [pilon] NODE_7335_length_451_cov_40.796970:1-451 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 309, Coverage: 59, minDepth: 15 [pilon] Confirmed 369 of 451 bases (81.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7335_length_451_cov_40.796970:1-451 [pilon] Processing NODE_13931_length_243_cov_14.663934:1-243 [pilon] Processing NODE_2678_length_932_cov_27.403206:1-932 [pilon] NODE_4290_length_682_cov_31.966132:1-682 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 408, Coverage: 50, minDepth: 13 [pilon] Confirmed 599 of 682 bases (87.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4290_length_682_cov_31.966132:1-682 [pilon] Processing NODE_5778_length_557_cov_7.250000:1-557 [pilon] NODE_6057_length_535_cov_17.159420:1-535 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 179, Coverage: 14, minDepth: 5 [pilon] Confirmed 361 of 535 bases (67.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6057_length_535_cov_17.159420:1-535 [pilon] Processing NODE_10123_length_321_cov_9.625000:1-321 [pilon] NODE_1803_length_1146_cov_15.955122:1-1146 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 384, Coverage: 25, minDepth: 6 [pilon] Confirmed 906 of 1146 bases (79.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1803_length_1146_cov_15.955122:1-1146 [pilon] Processing NODE_12287_length_243_cov_33.483607:1-243 [pilon] NODE_11191_length_276_cov_16.316129:1-276 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 55, Coverage: 10, minDepth: 5 [pilon] Confirmed 238 of 276 bases (86.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11191_length_276_cov_16.316129:1-276 [pilon] Processing NODE_2255_length_1020_cov_2.793103:1-1020 [pilon] NODE_10551_length_303_cov_12.560440:1-303 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 47, Coverage: 4, minDepth: 5 [pilon] Confirmed 146 of 303 bases (48.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10551_length_303_cov_12.560440:1-303 [pilon] Processing NODE_1170_length_1409_cov_25.760093:1-1409 [pilon] NODE_1928_length_1104_cov_24.482197:1-1104 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 612, Coverage: 32, minDepth: 8 [pilon] Confirmed 854 of 1104 bases (77.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1928_length_1104_cov_24.482197:1-1104 [pilon] NODE_9855_length_332_cov_18.563981:1-332 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 80, Coverage: 10, minDepth: 5 [pilon] Confirmed 231 of 332 bases (69.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9855_length_332_cov_18.563981:1-332 [pilon] Processing NODE_5016_length_617_cov_24.084677:1-617 [pilon] NODE_2897_length_893_cov_14.066062:1-893 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 260, Coverage: 31, minDepth: 8 [pilon] Confirmed 683 of 893 bases (76.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2897_length_893_cov_14.066062:1-893 [pilon] Processing NODE_12825_length_243_cov_24.803279:1-243 [pilon] NODE_13606_length_243_cov_17.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13606_length_243_cov_17.450820:1-243 [pilon] Processing NODE_4279_length_684_cov_0.621670:1-684 [pilon] NODE_13883_length_243_cov_15.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13883_length_243_cov_15.024590:1-243 [pilon] Processing NODE_10758_length_295_cov_10.586207:1-295 [pilon] NODE_9494_length_345_cov_37.669643:1-345 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 195, Coverage: 27, minDepth: 7 [pilon] Confirmed 319 of 345 bases (92.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9494_length_345_cov_37.669643:1-345 [pilon] Processing NODE_5134_length_607_cov_2.438272:1-607 [pilon] NODE_13238_length_243_cov_20.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13238_length_243_cov_20.745902:1-243 [pilon] Processing NODE_10447_length_306_cov_20.735135:1-306 [pilon] NODE_11078_length_280_cov_14.849057:1-280 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 44, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 280 bases (46.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11078_length_280_cov_14.849057:1-280 [pilon] Processing NODE_5683_length_564_cov_19.598194:1-564 [pilon] NODE_1927_length_1104_cov_27.935910:1-1104 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 663, Coverage: 46, minDepth: 12 [pilon] Confirmed 866 of 1104 bases (78.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1927_length_1104_cov_27.935910:1-1104 [pilon] Processing NODE_909_length_1550_cov_46.367390:1-1550 [pilon] NODE_1035_length_1477_cov_20.870944:1-1477 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 647, Coverage: 45, minDepth: 11 [pilon] Confirmed 1259 of 1477 bases (85.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1035_length_1477_cov_20.870944:1-1477 [pilon] Processing NODE_6256_length_520_cov_42.721805:1-520 [pilon] NODE_10179_length_318_cov_15.274112:1-318 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 63, Coverage: 4, minDepth: 5 [pilon] Confirmed 141 of 318 bases (44.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10179_length_318_cov_15.274112:1-318 [pilon] Processing NODE_7611_length_437_cov_7.892405:1-437 [pilon] NODE_712_length_1695_cov_24.520330:1-1695 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 916, Coverage: 61, minDepth: 15 [pilon] Confirmed 1629 of 1695 bases (96.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_712_length_1695_cov_24.520330:1-1695 [pilon] Processing NODE_8433_length_398_cov_13.249097:1-398 [pilon] NODE_1796_length_1148_cov_1.700097:1-1148 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 791 of 1148 bases (68.90%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1796_length_1148_cov_1.700097:1-1148 [pilon] Processing NODE_6147_length_528_cov_25.390663:1-528 [pilon] NODE_9375_length_351_cov_18.121739:1-351 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 94, Coverage: 19, minDepth: 5 [pilon] Confirmed 322 of 351 bases (91.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9375_length_351_cov_18.121739:1-351 [pilon] Processing NODE_2971_length_879_cov_14.437995:1-879 [pilon] NODE_7710_length_432_cov_14.723473:1-432 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 124, Coverage: 5, minDepth: 5 [pilon] Confirmed 156 of 432 bases (36.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7710_length_432_cov_14.723473:1-432 [pilon] Processing NODE_6907_length_477_cov_16.345506:1-477 [pilon] NODE_12287_length_243_cov_33.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 87, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12287_length_243_cov_33.483607:1-243 [pilon] Processing NODE_769_length_1643_cov_2.575558:1-1643 [pilon] NODE_9554_length_344_cov_13.197309:1-344 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 59, Coverage: 2, minDepth: 5 [pilon] Confirmed 109 of 344 bases (31.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9554_length_344_cov_13.197309:1-344 [pilon] Processing NODE_11193_length_276_cov_15.825806:1-276 [pilon] NODE_7690_length_433_cov_0.689103:1-433 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 433 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7690_length_433_cov_0.689103:1-433 [pilon] Processing NODE_10626_length_300_cov_20.050279:1-300 [pilon] NODE_11128_length_279_cov_9.462025:1-279 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11128_length_279_cov_9.462025:1-279 [pilon] Processing NODE_1121_length_1429_cov_3.686544:1-1429 [pilon] NODE_7560_length_440_cov_28.927900:1-440 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 223, Coverage: 34, minDepth: 9 [pilon] Confirmed 315 of 440 bases (71.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7560_length_440_cov_28.927900:1-440 [pilon] Processing NODE_13874_length_243_cov_15.106557:1-243 [pilon] NODE_9538_length_345_cov_10.647321:1-345 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 64, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 345 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9538_length_345_cov_10.647321:1-345 [pilon] Processing NODE_3968_length_718_cov_10.036851:1-718 [pilon] NODE_3595_length_770_cov_0.833590:1-770 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 327 of 770 bases (42.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3595_length_770_cov_0.833590:1-770 [pilon] Processing NODE_1190_length_1402_cov_3.443404:1-1402 [pilon] NODE_2678_length_932_cov_27.403206:1-932 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 480, Coverage: 53, minDepth: 13 [pilon] Confirmed 853 of 932 bases (91.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2678_length_932_cov_27.403206:1-932 [pilon] Processing NODE_8637_length_386_cov_15.445283:1-386 [pilon] NODE_13931_length_243_cov_14.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13931_length_243_cov_14.663934:1-243 [pilon] Processing NODE_8064_length_415_cov_1.078231:1-415 [pilon] NODE_4494_length_662_cov_14.711645:1-662 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 192, Coverage: 16, minDepth: 5 [pilon] Confirmed 352 of 662 bases (53.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4494_length_662_cov_14.711645:1-662 [pilon] Processing NODE_14056_length_243_cov_13.786885:1-243 [pilon] NODE_10758_length_295_cov_10.586207:1-295 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 38, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 295 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10758_length_295_cov_10.586207:1-295 [pilon] Processing NODE_2327_length_1005_cov_1.565611:1-1005 [pilon] NODE_10123_length_321_cov_9.625000:1-321 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 37, Coverage: 3, minDepth: 5 [pilon] Confirmed 128 of 321 bases (39.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10123_length_321_cov_9.625000:1-321 [pilon] Processing NODE_13488_length_243_cov_18.467213:1-243 [pilon] NODE_12825_length_243_cov_24.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12825_length_243_cov_24.803279:1-243 [pilon] Processing NODE_9468_length_347_cov_33.044248:1-347 [pilon] NODE_5778_length_557_cov_7.250000:1-557 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 72, Coverage: 17, minDepth: 5 [pilon] Confirmed 395 of 557 bases (70.92%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5778_length_557_cov_7.250000:1-557 [pilon] Processing NODE_14008_length_243_cov_14.139344:1-243 [pilon] NODE_5016_length_617_cov_24.084677:1-617 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 312, Coverage: 20, minDepth: 5 [pilon] Confirmed 431 of 617 bases (69.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5016_length_617_cov_24.084677:1-617 [pilon] Processing NODE_7610_length_437_cov_13.047468:1-437 [pilon] NODE_2255_length_1020_cov_2.793103:1-1020 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 65, Coverage: 8, minDepth: 5 [pilon] Confirmed 670 of 1020 bases (65.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2255_length_1020_cov_2.793103:1-1020 [pilon] Processing NODE_935_length_1537_cov_19.110169:1-1537 [pilon] NODE_6256_length_520_cov_42.721805:1-520 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 419, Coverage: 60, minDepth: 15 [pilon] Confirmed 443 of 520 bases (85.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6256_length_520_cov_42.721805:1-520 [pilon] Processing NODE_677_length_1722_cov_2.745784:1-1722 [pilon] NODE_4279_length_684_cov_0.621670:1-684 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 11 of 684 bases (1.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4279_length_684_cov_0.621670:1-684 [pilon] NODE_1170_length_1409_cov_25.760093:1-1409 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 754, Coverage: 44, minDepth: 11 [pilon] Confirmed 1076 of 1409 bases (76.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1170_length_1409_cov_25.760093:1-1409 [pilon] Processing NODE_13840_length_243_cov_15.352459:1-243 [pilon] Processing NODE_8284_length_405_cov_14.408451:1-405 [pilon] NODE_8433_length_398_cov_13.249097:1-398 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 95, Coverage: 13, minDepth: 5 [pilon] Confirmed 299 of 398 bases (75.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8433_length_398_cov_13.249097:1-398 [pilon] Processing NODE_3191_length_834_cov_1.476858:1-834 [pilon] NODE_5134_length_607_cov_2.438272:1-607 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 256 of 607 bases (42.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5134_length_607_cov_2.438272:1-607 [pilon] Processing NODE_6550_length_500_cov_29.448549:1-500 [pilon] NODE_10447_length_306_cov_20.735135:1-306 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 87, Coverage: 6, minDepth: 5 [pilon] Confirmed 177 of 306 bases (57.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10447_length_306_cov_20.735135:1-306 [pilon] Processing NODE_13954_length_243_cov_14.483607:1-243 [pilon] NODE_769_length_1643_cov_2.575558:1-1643 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 99, Coverage: 7, minDepth: 5 [pilon] Confirmed 1096 of 1643 bases (66.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_769_length_1643_cov_2.575558:1-1643 [pilon] Processing NODE_5837_length_552_cov_26.083527:1-552 [pilon] NODE_5683_length_564_cov_19.598194:1-564 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 200, Coverage: 23, minDepth: 6 [pilon] Confirmed 418 of 564 bases (74.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5683_length_564_cov_19.598194:1-564 [pilon] Processing NODE_13063_length_243_cov_22.270492:1-243 [pilon] NODE_7611_length_437_cov_7.892405:1-437 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 60, Coverage: 6, minDepth: 5 [pilon] Confirmed 226 of 437 bases (51.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7611_length_437_cov_7.892405:1-437 [pilon] Processing NODE_6754_length_486_cov_16.832877:1-486 [pilon] NODE_909_length_1550_cov_46.367390:1-1550 log: [pilon] frags shovill.bam: coverage 119 [pilon] Total Reads: 1522, Coverage: 119, minDepth: 30 [pilon] Confirmed 1254 of 1550 bases (80.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_909_length_1550_cov_46.367390:1-1550 [pilon] Processing NODE_49_length_3593_cov_35.938364:1-3593 [pilon] NODE_6147_length_528_cov_25.390663:1-528 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 232, Coverage: 22, minDepth: 6 [pilon] Confirmed 381 of 528 bases (72.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6147_length_528_cov_25.390663:1-528 [pilon] Processing NODE_11841_length_252_cov_10.656489:1-252 [pilon] NODE_2971_length_879_cov_14.437995:1-879 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 302, Coverage: 18, minDepth: 5 [pilon] Confirmed 605 of 879 bases (68.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2971_length_879_cov_14.437995:1-879 [pilon] Processing NODE_4662_length_647_cov_15.463878:1-647 [pilon] NODE_2327_length_1005_cov_1.565611:1-1005 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 47, Coverage: 6, minDepth: 5 [pilon] Confirmed 604 of 1005 bases (60.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2327_length_1005_cov_1.565611:1-1005 [pilon] Processing NODE_3145_length_843_cov_1.574792:1-843 [pilon] NODE_10626_length_300_cov_20.050279:1-300 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 75, Coverage: 7, minDepth: 5 [pilon] Confirmed 221 of 300 bases (73.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10626_length_300_cov_20.050279:1-300 [pilon] Processing NODE_117_length_2895_cov_3.478010:1-2895 [pilon] NODE_13874_length_243_cov_15.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13874_length_243_cov_15.106557:1-243 [pilon] Processing NODE_5738_length_560_cov_19.198178:1-560 [pilon] NODE_1121_length_1429_cov_3.686544:1-1429 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 131, Coverage: 12, minDepth: 5 [pilon] Confirmed 1260 of 1429 bases (88.17%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1121_length_1429_cov_3.686544:1-1429 [pilon] Processing NODE_14446_length_243_cov_10.713115:1-243 [pilon] NODE_11193_length_276_cov_15.825806:1-276 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 56, Coverage: 5, minDepth: 5 [pilon] Confirmed 134 of 276 bases (48.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11193_length_276_cov_15.825806:1-276 [pilon] Processing NODE_5487_length_578_cov_40.901532:1-578 [pilon] NODE_6907_length_477_cov_16.345506:1-477 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 147, Coverage: 21, minDepth: 5 [pilon] Confirmed 454 of 477 bases (95.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6907_length_477_cov_16.345506:1-477 [pilon] Processing NODE_13138_length_243_cov_21.622951:1-243 [pilon] NODE_3968_length_718_cov_10.036851:1-718 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 138, Coverage: 25, minDepth: 6 [pilon] Confirmed 603 of 718 bases (83.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3968_length_718_cov_10.036851:1-718 [pilon] NODE_677_length_1722_cov_2.745784:1-1722 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 114, Coverage: 8, minDepth: 5 [pilon] Confirmed 1304 of 1722 bases (75.73%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_677_length_1722_cov_2.745784:1-1722 [pilon] Processing NODE_11473_length_264_cov_18.643357:1-264 [pilon] Processing NODE_877_length_1578_cov_12.807138:1-1578 [pilon] NODE_1190_length_1402_cov_3.443404:1-1402 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 111, Coverage: 10, minDepth: 5 [pilon] Confirmed 1112 of 1402 bases (79.32%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1190_length_1402_cov_3.443404:1-1402 [pilon] Processing NODE_11166_length_276_cov_32.729032:1-276 [pilon] NODE_3191_length_834_cov_1.476858:1-834 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 32, Coverage: 5, minDepth: 5 [pilon] Confirmed 481 of 834 bases (57.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_8064_length_415_cov_1.078231:1-415 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 243 of 415 bases (58.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8064_length_415_cov_1.078231:1-415 [pilon] Finished processing NODE_3191_length_834_cov_1.476858:1-834 [pilon] Processing NODE_9870_length_330_cov_38.674641:1-330 [pilon] Processing NODE_13124_length_243_cov_21.754098:1-243 [pilon] NODE_8637_length_386_cov_15.445283:1-386 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 99, Coverage: 16, minDepth: 5 [pilon] Confirmed 316 of 386 bases (81.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8637_length_386_cov_15.445283:1-386 [pilon] Processing NODE_12085_length_244_cov_19.373984:1-244 [pilon] NODE_14056_length_243_cov_13.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14056_length_243_cov_13.786885:1-243 [pilon] Processing NODE_11389_length_267_cov_27.130137:1-267 [pilon] NODE_13488_length_243_cov_18.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13488_length_243_cov_18.467213:1-243 [pilon] Processing NODE_123_length_2864_cov_23.246810:1-2864 [pilon] NODE_7610_length_437_cov_13.047468:1-437 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 113, Coverage: 17, minDepth: 5 [pilon] Confirmed 370 of 437 bases (84.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7610_length_437_cov_13.047468:1-437 [pilon] Processing NODE_7591_length_438_cov_18.176656:1-438 [pilon] NODE_14008_length_243_cov_14.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14008_length_243_cov_14.139344:1-243 [pilon] Processing NODE_3093_length_854_cov_13.452933:1-854 [pilon] NODE_13954_length_243_cov_14.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13954_length_243_cov_14.483607:1-243 [pilon] Processing NODE_14626_length_243_cov_9.229508:1-243 [pilon] NODE_8284_length_405_cov_14.408451:1-405 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 105, Coverage: 6, minDepth: 5 [pilon] Confirmed 209 of 405 bases (51.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8284_length_405_cov_14.408451:1-405 [pilon] Processing NODE_571_length_1834_cov_17.013427:1-1834 [pilon] NODE_13840_length_243_cov_15.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13840_length_243_cov_15.352459:1-243 [pilon] Processing NODE_1037_length_1475_cov_15.142541:1-1475 [pilon] NODE_935_length_1537_cov_19.110169:1-1537 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 577, Coverage: 41, minDepth: 10 [pilon] Confirmed 1383 of 1537 bases (89.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_935_length_1537_cov_19.110169:1-1537 [pilon] Processing NODE_2566_length_953_cov_27.836538:1-953 [pilon] NODE_9468_length_347_cov_33.044248:1-347 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 174, Coverage: 25, minDepth: 6 [pilon] Confirmed 298 of 347 bases (85.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9468_length_347_cov_33.044248:1-347 [pilon] Processing NODE_1101_length_1440_cov_34.269143:1-1440 [pilon] NODE_5837_length_552_cov_26.083527:1-552 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 249, Coverage: 37, minDepth: 9 [pilon] Confirmed 423 of 552 bases (76.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5837_length_552_cov_26.083527:1-552 [pilon] Processing NODE_14689_length_243_cov_8.680328:1-243 [pilon] NODE_6550_length_500_cov_29.448549:1-500 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 270, Coverage: 50, minDepth: 13 [pilon] Confirmed 412 of 500 bases (82.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6550_length_500_cov_29.448549:1-500 [pilon] Processing NODE_8145_length_411_cov_13.941379:1-411 [pilon] NODE_13063_length_243_cov_22.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13063_length_243_cov_22.270492:1-243 [pilon] Processing NODE_8732_length_381_cov_11.292308:1-381 [pilon] NODE_117_length_2895_cov_3.478010:1-2895 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 261, Coverage: 12, minDepth: 5 [pilon] Confirmed 2366 of 2895 bases (81.73%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_117_length_2895_cov_3.478010:1-2895 [pilon] Processing NODE_15083_length_233_cov_2.562500:1-233 [pilon] NODE_11841_length_252_cov_10.656489:1-252 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 41, Coverage: 3, minDepth: 5 [pilon] Confirmed 55 of 252 bases (21.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11841_length_252_cov_10.656489:1-252 [pilon] Processing NODE_737_length_1673_cov_32.079253:1-1673 [pilon] NODE_6754_length_486_cov_16.832877:1-486 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 133, Coverage: 29, minDepth: 7 [pilon] Confirmed 396 of 486 bases (81.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6754_length_486_cov_16.832877:1-486 [pilon] Processing NODE_3869_length_732_cov_11.124386:1-732 [pilon] NODE_13124_length_243_cov_21.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13124_length_243_cov_21.754098:1-243 [pilon] Processing NODE_6060_length_535_cov_0.973430:1-535 [pilon] NODE_877_length_1578_cov_12.807138:1-1578 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 487, Coverage: 27, minDepth: 7 [pilon] Confirmed 1201 of 1578 bases (76.11%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_877_length_1578_cov_12.807138:1-1578 [pilon] Processing NODE_5132_length_607_cov_34.088477:1-607 [pilon] NODE_4662_length_647_cov_15.463878:1-647 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 196, Coverage: 25, minDepth: 6 [pilon] Confirmed 473 of 647 bases (73.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4662_length_647_cov_15.463878:1-647 [pilon] Processing NODE_5099_length_610_cov_32.807771:1-610 [pilon] NODE_3145_length_843_cov_1.574792:1-843 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 33, Coverage: 5, minDepth: 5 [pilon] Confirmed 336 of 843 bases (39.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3145_length_843_cov_1.574792:1-843 [pilon] Processing NODE_12532_length_243_cov_28.598361:1-243 [pilon] NODE_5738_length_560_cov_19.198178:1-560 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 183, Coverage: 24, minDepth: 6 [pilon] Confirmed 423 of 560 bases (75.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5738_length_560_cov_19.198178:1-560 [pilon] Processing NODE_5477_length_579_cov_12.288210:1-579 [pilon] NODE_14626_length_243_cov_9.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14626_length_243_cov_9.229508:1-243 [pilon] Processing NODE_11416_length_267_cov_14.726027:1-267 [pilon] NODE_5487_length_578_cov_40.901532:1-578 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 432, Coverage: 65, minDepth: 16 [pilon] Confirmed 509 of 578 bases (88.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5487_length_578_cov_40.901532:1-578 [pilon] Processing NODE_7314_length_453_cov_0.969880:1-453 [pilon] NODE_11473_length_264_cov_18.643357:1-264 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 54, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11473_length_264_cov_18.643357:1-264 [pilon] Processing NODE_577_length_1829_cov_22.427986:1-1829 [pilon] NODE_14446_length_243_cov_10.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14446_length_243_cov_10.713115:1-243 [pilon] Processing NODE_10109_length_321_cov_15.950000:1-321 [pilon] NODE_11166_length_276_cov_32.729032:1-276 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 111, Coverage: 7, minDepth: 5 [pilon] Confirmed 198 of 276 bases (71.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11166_length_276_cov_32.729032:1-276 [pilon] Processing NODE_2483_length_970_cov_26.712603:1-970 [pilon] NODE_12085_length_244_cov_19.373984:1-244 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 142 of 244 bases (58.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12085_length_244_cov_19.373984:1-244 [pilon] Processing NODE_11351_length_270_cov_13.872483:1-270 [pilon] NODE_13138_length_243_cov_21.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13138_length_243_cov_21.622951:1-243 [pilon] Processing NODE_10410_length_308_cov_23.668449:1-308 [pilon] NODE_49_length_3593_cov_35.938364:1-3593 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 2766, Coverage: 74, minDepth: 19 [pilon] Confirmed 3157 of 3593 bases (87.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_49_length_3593_cov_35.938364:1-3593 [pilon] Processing NODE_12739_length_243_cov_25.696721:1-243 [pilon] NODE_9870_length_330_cov_38.674641:1-330 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 172, Coverage: 23, minDepth: 6 [pilon] Confirmed 280 of 330 bases (84.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9870_length_330_cov_38.674641:1-330 [pilon] Processing NODE_11783_length_254_cov_7.007519:1-254 [pilon] NODE_11389_length_267_cov_27.130137:1-267 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 71, Coverage: 7, minDepth: 5 [pilon] Confirmed 189 of 267 bases (70.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11389_length_267_cov_27.130137:1-267 [pilon] Processing NODE_10776_length_294_cov_18.468208:1-294 [pilon] NODE_7591_length_438_cov_18.176656:1-438 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 130, Coverage: 9, minDepth: 5 [pilon] Confirmed 255 of 438 bases (58.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7591_length_438_cov_18.176656:1-438 [pilon] Processing NODE_14945_length_243_cov_6.163934:1-243 [pilon] NODE_3093_length_854_cov_13.452933:1-854 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 245, Coverage: 25, minDepth: 6 [pilon] Confirmed 675 of 854 bases (79.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3093_length_854_cov_13.452933:1-854 [pilon] Processing NODE_5985_length_542_cov_14.921615:1-542 [pilon] NODE_15083_length_233_cov_2.562500:1-233 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 233 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15083_length_233_cov_2.562500:1-233 [pilon] Processing NODE_12544_length_243_cov_28.393443:1-243 [pilon] NODE_571_length_1834_cov_17.013427:1-1834 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 688, Coverage: 43, minDepth: 11 [pilon] Confirmed 1391 of 1834 bases (75.85%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_571_length_1834_cov_17.013427:1-1834 [pilon] Processing NODE_1892_length_1115_cov_40.134809:1-1115 [pilon] NODE_123_length_2864_cov_23.246810:1-2864 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 1498, Coverage: 64, minDepth: 16 [pilon] Confirmed 2486 of 2864 bases (86.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_123_length_2864_cov_23.246810:1-2864 [pilon] Processing NODE_4160_length_697_cov_45.022569:1-697 [pilon] NODE_2566_length_953_cov_27.836538:1-953 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 511, Coverage: 48, minDepth: 12 [pilon] Confirmed 897 of 953 bases (94.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2566_length_953_cov_27.836538:1-953 [pilon] Processing NODE_5993_length_541_cov_34.297619:1-541 [pilon] NODE_14689_length_243_cov_8.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14689_length_243_cov_8.680328:1-243 [pilon] Processing NODE_9496_length_345_cov_35.156250:1-345 [pilon] NODE_1037_length_1475_cov_15.142541:1-1475 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 579, Coverage: 40, minDepth: 10 [pilon] Confirmed 1386 of 1475 bases (93.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1037_length_1475_cov_15.142541:1-1475 [pilon] Processing NODE_8872_length_373_cov_27.218254:1-373 [pilon] NODE_5132_length_607_cov_34.088477:1-607 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 447, Coverage: 29, minDepth: 7 [pilon] Confirmed 365 of 607 bases (60.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5132_length_607_cov_34.088477:1-607 [pilon] Processing NODE_10707_length_297_cov_22.142045:1-297 [pilon] NODE_8732_length_381_cov_11.292308:1-381 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 62, Coverage: 10, minDepth: 5 [pilon] Confirmed 228 of 381 bases (59.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8732_length_381_cov_11.292308:1-381 [pilon] Processing NODE_8354_length_402_cov_22.373665:1-402 [pilon] NODE_1101_length_1440_cov_34.269143:1-1440 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 1096, Coverage: 62, minDepth: 16 [pilon] Confirmed 1247 of 1440 bases (86.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1101_length_1440_cov_34.269143:1-1440 [pilon] Processing NODE_14185_length_243_cov_12.745902:1-243 [pilon] NODE_8145_length_411_cov_13.941379:1-411 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 111, Coverage: 7, minDepth: 5 [pilon] Confirmed 273 of 411 bases (66.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8145_length_411_cov_13.941379:1-411 [pilon] Processing NODE_4255_length_687_cov_22.330389:1-687 [pilon] NODE_6060_length_535_cov_0.973430:1-535 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 162 of 535 bases (30.28%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6060_length_535_cov_0.973430:1-535 [pilon] Processing NODE_4647_length_648_cov_13.271347:1-648 [pilon] NODE_11416_length_267_cov_14.726027:1-267 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11416_length_267_cov_14.726027:1-267 [pilon] Processing NODE_11015_length_283_cov_18.944444:1-283 [pilon] NODE_3869_length_732_cov_11.124386:1-732 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 151, Coverage: 27, minDepth: 7 [pilon] Confirmed 600 of 732 bases (81.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3869_length_732_cov_11.124386:1-732 [pilon] Processing NODE_10452_length_306_cov_17.610811:1-306 [pilon] NODE_5099_length_610_cov_32.807771:1-610 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 361, Coverage: 53, minDepth: 13 [pilon] Confirmed 553 of 610 bases (90.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5099_length_610_cov_32.807771:1-610 [pilon] Processing NODE_6532_length_501_cov_18.831579:1-501 [pilon] NODE_737_length_1673_cov_32.079253:1-1673 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 1217, Coverage: 67, minDepth: 17 [pilon] Confirmed 1477 of 1673 bases (88.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_737_length_1673_cov_32.079253:1-1673 [pilon] Processing NODE_12292_length_243_cov_33.377049:1-243 [pilon] NODE_12532_length_243_cov_28.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12532_length_243_cov_28.598361:1-243 [pilon] Processing NODE_14918_length_243_cov_6.516393:1-243 [pilon] NODE_5477_length_579_cov_12.288210:1-579 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 146, Coverage: 18, minDepth: 5 [pilon] Confirmed 388 of 579 bases (67.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5477_length_579_cov_12.288210:1-579 [pilon] Processing NODE_8398_length_399_cov_34.949640:1-399 [pilon] NODE_11783_length_254_cov_7.007519:1-254 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 254 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11783_length_254_cov_7.007519:1-254 [pilon] NODE_2483_length_970_cov_26.712603:1-970 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 588, Coverage: 45, minDepth: 11 [pilon] Confirmed 787 of 970 bases (81.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_10109_length_321_cov_15.950000:1-321 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 74, Coverage: 7, minDepth: 5 [pilon] Confirmed 207 of 321 bases (64.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2483_length_970_cov_26.712603:1-970 [pilon] Processing NODE_10816_length_291_cov_33.747059:1-291 [pilon] Processing NODE_8766_length_379_cov_4.879845:1-379 [pilon] Finished processing NODE_10109_length_321_cov_15.950000:1-321 [pilon] Processing NODE_549_length_1858_cov_12.271157:1-1858 [pilon] NODE_12544_length_243_cov_28.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12544_length_243_cov_28.393443:1-243 [pilon] Processing NODE_2904_length_892_cov_1.317769:1-892 [pilon] NODE_11351_length_270_cov_13.872483:1-270 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 50, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 270 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11351_length_270_cov_13.872483:1-270 [pilon] Processing NODE_10490_length_305_cov_23.298913:1-305 [pilon] NODE_7314_length_453_cov_0.969880:1-453 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 34 of 453 bases (7.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7314_length_453_cov_0.969880:1-453 [pilon] Processing NODE_9595_length_342_cov_14.339367:1-342 [pilon] NODE_12739_length_243_cov_25.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12739_length_243_cov_25.696721:1-243 [pilon] Processing NODE_11352_length_270_cov_12.053691:1-270 [pilon] NODE_10410_length_308_cov_23.668449:1-308 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 89, Coverage: 9, minDepth: 5 [pilon] Confirmed 191 of 308 bases (62.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10410_length_308_cov_23.668449:1-308 [pilon] Processing NODE_1355_length_1317_cov_24.282609:1-1317 [pilon] NODE_14945_length_243_cov_6.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14945_length_243_cov_6.163934:1-243 [pilon] Processing NODE_10976_length_285_cov_16.506098:1-285 [pilon] NODE_10707_length_297_cov_22.142045:1-297 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 74, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 297 bases (43.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10707_length_297_cov_22.142045:1-297 [pilon] Processing NODE_6966_length_474_cov_0.838527:1-474 [pilon] NODE_10776_length_294_cov_18.468208:1-294 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 66, Coverage: 5, minDepth: 5 [pilon] Confirmed 137 of 294 bases (46.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10776_length_294_cov_18.468208:1-294 [pilon] Processing NODE_9290_length_354_cov_18.218884:1-354 [pilon] NODE_4647_length_648_cov_13.271347:1-648 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 161, Coverage: 32, minDepth: 8 [pilon] Confirmed 513 of 648 bases (79.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4647_length_648_cov_13.271347:1-648 [pilon] Processing NODE_7813_length_426_cov_26.111475:1-426 [pilon] NODE_577_length_1829_cov_22.427986:1-1829 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 908, Coverage: 58, minDepth: 15 [pilon] Confirmed 1449 of 1829 bases (79.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_577_length_1829_cov_22.427986:1-1829 [pilon] Processing NODE_5317_length_591_cov_15.251064:1-591 [pilon] NODE_11015_length_283_cov_18.944444:1-283 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 73, Coverage: 3, minDepth: 5 [pilon] Confirmed 112 of 283 bases (39.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11015_length_283_cov_18.944444:1-283 [pilon] Processing NODE_9206_length_357_cov_19.203390:1-357 [pilon] NODE_5985_length_542_cov_14.921615:1-542 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 165, Coverage: 20, minDepth: 5 [pilon] Confirmed 387 of 542 bases (71.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5985_length_542_cov_14.921615:1-542 [pilon] Processing NODE_3881_length_730_cov_23.418719:1-730 [pilon] NODE_9496_length_345_cov_35.156250:1-345 log: [pilon] NODE_4160_length_697_cov_45.022569:1-697 log: [pilon] frags shovill.bam: coverage 93 [pilon] Total Reads: 584, Coverage: 93, minDepth: 23 [pilon] Confirmed 576 of 697 bases (82.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 165, Coverage: 6, minDepth: 5 [pilon] Confirmed 150 of 345 bases (43.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4160_length_697_cov_45.022569:1-697 [pilon] Finished processing NODE_9496_length_345_cov_35.156250:1-345 [pilon] Processing NODE_7487_length_444_cov_1.464396:1-444 [pilon] Processing NODE_7265_length_456_cov_21.695522:1-456 [pilon] NODE_5993_length_541_cov_34.297619:1-541 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 366, Coverage: 34, minDepth: 9 [pilon] Confirmed 360 of 541 bases (66.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5993_length_541_cov_34.297619:1-541 [pilon] Processing NODE_2942_length_883_cov_2.198163:1-883 [pilon] NODE_1892_length_1115_cov_40.134809:1-1115 log: [pilon] frags shovill.bam: coverage 94 [pilon] Total Reads: 928, Coverage: 94, minDepth: 24 [pilon] Confirmed 965 of 1115 bases (86.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1892_length_1115_cov_40.134809:1-1115 [pilon] Processing NODE_6105_length_531_cov_27.978049:1-531 [pilon] NODE_8872_length_373_cov_27.218254:1-373 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 139, Coverage: 23, minDepth: 6 [pilon] Confirmed 280 of 373 bases (75.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8872_length_373_cov_27.218254:1-373 [pilon] Processing NODE_1230_length_1373_cov_29.881789:1-1373 [pilon] NODE_14185_length_243_cov_12.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14185_length_243_cov_12.745902:1-243 [pilon] Processing NODE_9540_length_345_cov_7.375000:1-345 [pilon] NODE_8354_length_402_cov_22.373665:1-402 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 133, Coverage: 11, minDepth: 5 [pilon] Confirmed 261 of 402 bases (64.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8354_length_402_cov_22.373665:1-402 [pilon] Processing NODE_3576_length_773_cov_13.576687:1-773 [pilon] NODE_4255_length_687_cov_22.330389:1-687 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 313, Coverage: 19, minDepth: 5 [pilon] Confirmed 439 of 687 bases (63.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4255_length_687_cov_22.330389:1-687 [pilon] Processing NODE_11386_length_267_cov_34.383562:1-267 [pilon] NODE_10452_length_306_cov_17.610811:1-306 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10452_length_306_cov_17.610811:1-306 [pilon] Processing NODE_6128_length_529_cov_51.512255:1-529 [pilon] NODE_6532_length_501_cov_18.831579:1-501 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 161, Coverage: 31, minDepth: 8 [pilon] Confirmed 387 of 501 bases (77.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6532_length_501_cov_18.831579:1-501 [pilon] Processing NODE_12233_length_243_cov_35.360656:1-243 [pilon] NODE_2904_length_892_cov_1.317769:1-892 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 25, Coverage: 3, minDepth: 5 [pilon] Confirmed 214 of 892 bases (23.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2904_length_892_cov_1.317769:1-892 [pilon] Processing NODE_210_length_2471_cov_21.806809:1-2471 [pilon] NODE_14918_length_243_cov_6.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14918_length_243_cov_6.516393:1-243 [pilon] Processing NODE_1172_length_1409_cov_13.085404:1-1409 [pilon] NODE_8766_length_379_cov_4.879845:1-379 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 37, Coverage: 4, minDepth: 5 [pilon] Confirmed 175 of 379 bases (46.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8766_length_379_cov_4.879845:1-379 [pilon] Processing NODE_2253_length_1020_cov_23.403782:1-1020 [pilon] NODE_12292_length_243_cov_33.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 99, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12292_length_243_cov_33.377049:1-243 [pilon] Processing NODE_11209_length_276_cov_9.129032:1-276 [pilon] NODE_8398_length_399_cov_34.949640:1-399 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 231, Coverage: 40, minDepth: 10 [pilon] Confirmed 326 of 399 bases (81.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8398_length_399_cov_34.949640:1-399 [pilon] Processing NODE_1872_length_1121_cov_26.069000:1-1121 [pilon] NODE_7813_length_426_cov_26.111475:1-426 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 152, Coverage: 20, minDepth: 5 [pilon] Confirmed 343 of 426 bases (80.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7813_length_426_cov_26.111475:1-426 [pilon] Processing NODE_5758_length_559_cov_3.063927:1-559 [pilon] NODE_10816_length_291_cov_33.747059:1-291 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 136, Coverage: 13, minDepth: 5 [pilon] Confirmed 232 of 291 bases (79.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10816_length_291_cov_33.747059:1-291 [pilon] Processing NODE_7910_length_422_cov_57.438538:1-422 [pilon] NODE_10490_length_305_cov_23.298913:1-305 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 103, Coverage: 9, minDepth: 5 [pilon] Confirmed 204 of 305 bases (66.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10490_length_305_cov_23.298913:1-305 [pilon] Processing NODE_2351_length_1000_cov_28.044369:1-1000 [pilon] NODE_549_length_1858_cov_12.271157:1-1858 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 506, Coverage: 33, minDepth: 8 [pilon] Confirmed 1316 of 1858 bases (70.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_549_length_1858_cov_12.271157:1-1858 [pilon] Processing NODE_2823_length_906_cov_9.077707:1-906 [pilon] NODE_11352_length_270_cov_12.053691:1-270 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 43, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 270 bases (48.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11352_length_270_cov_12.053691:1-270 [pilon] Processing NODE_12097_length_244_cov_9.398374:1-244 [pilon] NODE_10976_length_285_cov_16.506098:1-285 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 53, Coverage: 6, minDepth: 5 [pilon] Confirmed 162 of 285 bases (56.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10976_length_285_cov_16.506098:1-285 [pilon] Processing NODE_6120_length_530_cov_40.515892:1-530 [pilon] NODE_9595_length_342_cov_14.339367:1-342 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 71, Coverage: 5, minDepth: 5 [pilon] Confirmed 161 of 342 bases (47.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9595_length_342_cov_14.339367:1-342 [pilon] Processing NODE_6424_length_509_cov_1.626289:1-509 [pilon] NODE_6966_length_474_cov_0.838527:1-474 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 109 of 474 bases (23.00%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6966_length_474_cov_0.838527:1-474 [pilon] Processing NODE_5839_length_552_cov_21.893271:1-552 [pilon] NODE_1355_length_1317_cov_24.282609:1-1317 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 804, Coverage: 45, minDepth: 11 [pilon] Confirmed 961 of 1317 bases (72.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1355_length_1317_cov_24.282609:1-1317 [pilon] Processing NODE_7029_length_469_cov_38.554598:1-469 [pilon] NODE_7487_length_444_cov_1.464396:1-444 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 444 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7487_length_444_cov_1.464396:1-444 [pilon] Processing NODE_5777_length_557_cov_14.442661:1-557 [pilon] NODE_9206_length_357_cov_19.203390:1-357 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 98, Coverage: 13, minDepth: 5 [pilon] Confirmed 233 of 357 bases (65.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9206_length_357_cov_19.203390:1-357 [pilon] Processing NODE_6523_length_502_cov_1.356955:1-502 [pilon] NODE_9290_length_354_cov_18.218884:1-354 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 88, Coverage: 3, minDepth: 5 [pilon] Confirmed 128 of 354 bases (36.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9290_length_354_cov_18.218884:1-354 [pilon] Processing NODE_6703_length_490_cov_10.243902:1-490 [pilon] NODE_5317_length_591_cov_15.251064:1-591 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 150, Coverage: 16, minDepth: 5 [pilon] Confirmed 414 of 591 bases (70.05%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5317_length_591_cov_15.251064:1-591 [pilon] Processing NODE_922_length_1544_cov_16.208011:1-1544 [pilon] NODE_12233_length_243_cov_35.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 95, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12233_length_243_cov_35.360656:1-243 [pilon] Processing NODE_6354_length_513_cov_26.627551:1-513 [pilon] NODE_3881_length_730_cov_23.418719:1-730 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 397, Coverage: 39, minDepth: 10 [pilon] Confirmed 635 of 730 bases (86.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3881_length_730_cov_23.418719:1-730 [pilon] Processing NODE_3987_length_716_cov_9.579832:1-716 [pilon] NODE_6105_length_531_cov_27.978049:1-531 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 259, Coverage: 40, minDepth: 10 [pilon] Confirmed 459 of 531 bases (86.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6105_length_531_cov_27.978049:1-531 [pilon] Processing NODE_14747_length_243_cov_8.131148:1-243 [pilon] NODE_7265_length_456_cov_21.695522:1-456 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 146, Coverage: 25, minDepth: 6 [pilon] Confirmed 361 of 456 bases (79.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7265_length_456_cov_21.695522:1-456 [pilon] Processing NODE_14781_length_243_cov_7.901639:1-243 [pilon] NODE_2942_length_883_cov_2.198163:1-883 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 47, Coverage: 7, minDepth: 5 [pilon] Confirmed 526 of 883 bases (59.57%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2942_length_883_cov_2.198163:1-883 [pilon] Processing NODE_12161_length_243_cov_38.762295:1-243 [pilon] NODE_9540_length_345_cov_7.375000:1-345 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 345 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9540_length_345_cov_7.375000:1-345 [pilon] Processing NODE_11510_length_263_cov_26.894366:1-263 [pilon] NODE_11386_length_267_cov_34.383562:1-267 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 96, Coverage: 12, minDepth: 5 [pilon] Confirmed 234 of 267 bases (87.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11386_length_267_cov_34.383562:1-267 [pilon] Processing NODE_7871_length_424_cov_1.118812:1-424 [pilon] NODE_3576_length_773_cov_13.576687:1-773 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 213, Coverage: 21, minDepth: 5 [pilon] Confirmed 689 of 773 bases (89.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3576_length_773_cov_13.576687:1-773 [pilon] Processing NODE_11126_length_279_cov_10.031646:1-279 [pilon] NODE_1230_length_1373_cov_29.881789:1-1373 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 845, Coverage: 67, minDepth: 17 [pilon] Confirmed 1247 of 1373 bases (90.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1230_length_1373_cov_29.881789:1-1373 [pilon] Processing NODE_6947_length_474_cov_23.498584:1-474 [pilon] NODE_5758_length_559_cov_3.063927:1-559 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 36, Coverage: 8, minDepth: 5 [pilon] Confirmed 381 of 559 bases (68.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5758_length_559_cov_3.063927:1-559 [pilon] Processing NODE_2525_length_962_cov_19.806183:1-962 [pilon] NODE_6128_length_529_cov_51.512255:1-529 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 494, Coverage: 90, minDepth: 23 [pilon] Confirmed 421 of 529 bases (79.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6128_length_529_cov_51.512255:1-529 [pilon] Processing NODE_12597_length_243_cov_27.614754:1-243 [pilon] NODE_2253_length_1020_cov_23.403782:1-1020 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 497, Coverage: 45, minDepth: 11 [pilon] Confirmed 959 of 1020 bases (94.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2253_length_1020_cov_23.403782:1-1020 [pilon] Processing NODE_8781_length_378_cov_16.844358:1-378 [pilon] NODE_1172_length_1409_cov_13.085404:1-1409 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 553, Coverage: 43, minDepth: 11 [pilon] Confirmed 1274 of 1409 bases (90.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1172_length_1409_cov_13.085404:1-1409 [pilon] Processing NODE_4898_length_626_cov_27.522772:1-626 [pilon] NODE_11209_length_276_cov_9.129032:1-276 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 32, Coverage: 8, minDepth: 5 [pilon] Confirmed 219 of 276 bases (79.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11209_length_276_cov_9.129032:1-276 [pilon] Processing NODE_945_length_1532_cov_11.194897:1-1532 [pilon] NODE_1872_length_1121_cov_26.069000:1-1121 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 699, Coverage: 54, minDepth: 14 [pilon] Confirmed 970 of 1121 bases (86.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1872_length_1121_cov_26.069000:1-1121 [pilon] Processing NODE_15101_length_221_cov_5.170000:1-221 [pilon] NODE_2823_length_906_cov_9.077707:1-906 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 232, Coverage: 27, minDepth: 7 [pilon] Confirmed 744 of 906 bases (82.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2823_length_906_cov_9.077707:1-906 [pilon] Processing NODE_9925_length_329_cov_9.634615:1-329 [pilon] NODE_12097_length_244_cov_9.398374:1-244 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 23, Coverage: 3, minDepth: 5 [pilon] Confirmed 75 of 244 bases (30.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12097_length_244_cov_9.398374:1-244 [pilon] Processing NODE_14298_length_243_cov_11.852459:1-243 [pilon] NODE_7910_length_422_cov_57.438538:1-422 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 393, Coverage: 71, minDepth: 18 [pilon] Confirmed 394 of 422 bases (93.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7910_length_422_cov_57.438538:1-422 [pilon] Processing NODE_12015_length_246_cov_14.344000:1-246 [pilon] NODE_7029_length_469_cov_38.554598:1-469 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 303, Coverage: 46, minDepth: 12 [pilon] Confirmed 406 of 469 bases (86.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7029_length_469_cov_38.554598:1-469 [pilon] Processing NODE_3560_length_776_cov_15.641221:1-776 [pilon] NODE_210_length_2471_cov_21.806809:1-2471 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 1354, Coverage: 52, minDepth: 13 [pilon] Confirmed 2151 of 2471 bases (87.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_210_length_2471_cov_21.806809:1-2471 [pilon] Processing NODE_13190_length_243_cov_21.188525:1-243 [pilon] NODE_6354_length_513_cov_26.627551:1-513 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 252, Coverage: 33, minDepth: 8 [pilon] Confirmed 341 of 513 bases (66.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6354_length_513_cov_26.627551:1-513 [pilon] Processing NODE_10219_length_316_cov_12.389744:1-316 [pilon] NODE_6424_length_509_cov_1.626289:1-509 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 271 of 509 bases (53.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6424_length_509_cov_1.626289:1-509 [pilon] Processing NODE_6116_length_531_cov_4.624390:1-531 [pilon] NODE_6703_length_490_cov_10.243902:1-490 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 102, Coverage: 13, minDepth: 5 [pilon] Confirmed 366 of 490 bases (74.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6703_length_490_cov_10.243902:1-490 [pilon] Processing NODE_7908_length_423_cov_0.764901:1-423 [pilon] NODE_2351_length_1000_cov_28.044369:1-1000 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 598, Coverage: 63, minDepth: 16 [pilon] Confirmed 817 of 1000 bases (81.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2351_length_1000_cov_28.044369:1-1000 [pilon] Processing NODE_8671_length_384_cov_13.296578:1-384 [pilon] NODE_6120_length_530_cov_40.515892:1-530 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 380, Coverage: 64, minDepth: 16 [pilon] Confirmed 486 of 530 bases (91.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6120_length_530_cov_40.515892:1-530 [pilon] Processing NODE_13131_length_243_cov_21.663934:1-243 [pilon] NODE_5839_length_552_cov_21.893271:1-552 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 207, Coverage: 35, minDepth: 9 [pilon] Confirmed 363 of 552 bases (65.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5839_length_552_cov_21.893271:1-552 [pilon] Processing NODE_5832_length_553_cov_9.694444:1-553 [pilon] NODE_6523_length_502_cov_1.356955:1-502 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 502 bases (25.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6523_length_502_cov_1.356955:1-502 [pilon] Processing NODE_4756_length_639_cov_2.552124:1-639 [pilon] NODE_5777_length_557_cov_14.442661:1-557 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 167, Coverage: 15, minDepth: 5 [pilon] Confirmed 476 of 557 bases (85.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5777_length_557_cov_14.442661:1-557 [pilon] Processing NODE_12399_length_243_cov_31.016393:1-243 [pilon] NODE_3987_length_716_cov_9.579832:1-716 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 127, Coverage: 23, minDepth: 6 [pilon] Confirmed 591 of 716 bases (82.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3987_length_716_cov_9.579832:1-716 [pilon] Processing NODE_153_length_2702_cov_20.320031:1-2702 [pilon] NODE_14747_length_243_cov_8.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14747_length_243_cov_8.131148:1-243 [pilon] Processing NODE_12422_length_243_cov_30.508197:1-243 [pilon] NODE_922_length_1544_cov_16.208011:1-1544 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 560, Coverage: 35, minDepth: 9 [pilon] Confirmed 1280 of 1544 bases (82.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_922_length_1544_cov_16.208011:1-1544 [pilon] Processing NODE_8979_length_367_cov_28.691057:1-367 [pilon] NODE_2525_length_962_cov_19.806183:1-962 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 405, Coverage: 31, minDepth: 8 [pilon] Confirmed 837 of 962 bases (87.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2525_length_962_cov_19.806183:1-962 [pilon] Processing NODE_9446_length_348_cov_16.863436:1-348 [pilon] NODE_14781_length_243_cov_7.901639:1-243 log: [pilon] NODE_7871_length_424_cov_1.118812:1-424 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 96 of 424 bases (22.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7871_length_424_cov_1.118812:1-424 [pilon] Finished processing NODE_14781_length_243_cov_7.901639:1-243 [pilon] Processing NODE_3574_length_774_cov_1.300153:1-774 [pilon] Processing NODE_1262_length_1357_cov_23.876214:1-1357 [pilon] NODE_11510_length_263_cov_26.894366:1-263 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 79, Coverage: 6, minDepth: 5 [pilon] Confirmed 171 of 263 bases (65.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11510_length_263_cov_26.894366:1-263 [pilon] NODE_12161_length_243_cov_38.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_7941_length_420_cov_28.752508:1-420 [pilon] Finished processing NODE_12161_length_243_cov_38.762295:1-243 [pilon] Processing NODE_4623_length_650_cov_23.873346:1-650 [pilon] NODE_6947_length_474_cov_23.498584:1-474 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 174, Coverage: 30, minDepth: 8 [pilon] Confirmed 354 of 474 bases (74.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6947_length_474_cov_23.498584:1-474 [pilon] Processing NODE_1027_length_1482_cov_3.183688:1-1482 [pilon] NODE_11126_length_279_cov_10.031646:1-279 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11126_length_279_cov_10.031646:1-279 [pilon] Processing NODE_6396_length_510_cov_20.848329:1-510 [pilon] NODE_12597_length_243_cov_27.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12597_length_243_cov_27.614754:1-243 [pilon] Processing NODE_11368_length_269_cov_7.932432:1-269 [pilon] NODE_10219_length_316_cov_12.389744:1-316 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 64, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 316 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10219_length_316_cov_12.389744:1-316 [pilon] Processing NODE_688_length_1711_cov_19.593711:1-1711 [pilon] NODE_7908_length_423_cov_0.764901:1-423 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 423 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7908_length_423_cov_0.764901:1-423 [pilon] Processing NODE_9707_length_338_cov_11.562212:1-338 [pilon] NODE_8781_length_378_cov_16.844358:1-378 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 89, Coverage: 19, minDepth: 5 [pilon] Confirmed 293 of 378 bases (77.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8781_length_378_cov_16.844358:1-378 [pilon] Processing NODE_6694_length_491_cov_0.545946:1-491 [pilon] NODE_15101_length_221_cov_5.170000:1-221 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 221 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15101_length_221_cov_5.170000:1-221 [pilon] Processing NODE_10048_length_323_cov_54.594059:1-323 [pilon] NODE_4898_length_626_cov_27.522772:1-626 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 323, Coverage: 42, minDepth: 11 [pilon] Confirmed 581 of 626 bases (92.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4898_length_626_cov_27.522772:1-626 [pilon] Processing NODE_10107_length_321_cov_17.350000:1-321 [pilon] NODE_9925_length_329_cov_9.634615:1-329 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 50, Coverage: 5, minDepth: 5 [pilon] Confirmed 209 of 329 bases (63.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9925_length_329_cov_9.634615:1-329 [pilon] Processing NODE_336_length_2143_cov_25.504451:1-2143 [pilon] NODE_14298_length_243_cov_11.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14298_length_243_cov_11.852459:1-243 [pilon] Processing NODE_4466_length_664_cov_26.075506:1-664 [pilon] NODE_3560_length_776_cov_15.641221:1-776 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 230, Coverage: 22, minDepth: 6 [pilon] Confirmed 686 of 776 bases (88.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3560_length_776_cov_15.641221:1-776 [pilon] Processing NODE_13500_length_243_cov_18.352459:1-243 [pilon] NODE_12015_length_246_cov_14.344000:1-246 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 49, Coverage: 6, minDepth: 5 [pilon] Confirmed 154 of 246 bases (62.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12015_length_246_cov_14.344000:1-246 [pilon] Processing NODE_566_length_1841_cov_3.172093:1-1841 [pilon] NODE_945_length_1532_cov_11.194897:1-1532 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 427, Coverage: 30, minDepth: 8 [pilon] Confirmed 1307 of 1532 bases (85.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_945_length_1532_cov_11.194897:1-1532 [pilon] Processing NODE_9400_length_350_cov_29.786026:1-350 [pilon] NODE_13190_length_243_cov_21.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13190_length_243_cov_21.188525:1-243 [pilon] Processing NODE_6709_length_489_cov_38.258152:1-489 [pilon] NODE_6116_length_531_cov_4.624390:1-531 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 46, Coverage: 11, minDepth: 5 [pilon] Confirmed 369 of 531 bases (69.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6116_length_531_cov_4.624390:1-531 [pilon] Processing NODE_4839_length_631_cov_29.374510:1-631 [pilon] NODE_5832_length_553_cov_9.694444:1-553 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 117, Coverage: 16, minDepth: 5 [pilon] Confirmed 390 of 553 bases (70.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5832_length_553_cov_9.694444:1-553 [pilon] Processing NODE_13753_length_243_cov_16.016393:1-243 [pilon] NODE_12399_length_243_cov_31.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12399_length_243_cov_31.016393:1-243 [pilon] Processing NODE_2005_length_1085_cov_27.278008:1-1085 [pilon] NODE_13131_length_243_cov_21.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13131_length_243_cov_21.663934:1-243 [pilon] Processing NODE_4240_length_689_cov_2.570423:1-689 [pilon] NODE_9446_length_348_cov_16.863436:1-348 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 79, Coverage: 7, minDepth: 5 [pilon] Confirmed 182 of 348 bases (52.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9446_length_348_cov_16.863436:1-348 [pilon] NODE_8671_length_384_cov_13.296578:1-384 log: [pilon] Processing NODE_3988_length_716_cov_8.137815:1-716 [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 86, Coverage: 13, minDepth: 5 [pilon] Confirmed 278 of 384 bases (72.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8671_length_384_cov_13.296578:1-384 [pilon] Processing NODE_8414_length_399_cov_11.928058:1-399 [pilon] NODE_4756_length_639_cov_2.552124:1-639 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 363 of 639 bases (56.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4756_length_639_cov_2.552124:1-639 [pilon] Processing NODE_7367_length_450_cov_13.407295:1-450 [pilon] NODE_12422_length_243_cov_30.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 84, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12422_length_243_cov_30.508197:1-243 [pilon] Processing NODE_8427_length_398_cov_21.552347:1-398 [pilon] NODE_8979_length_367_cov_28.691057:1-367 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 157, Coverage: 19, minDepth: 5 [pilon] Confirmed 236 of 367 bases (64.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8979_length_367_cov_28.691057:1-367 [pilon] Processing NODE_14624_length_243_cov_9.229508:1-243 [pilon] NODE_7941_length_420_cov_28.752508:1-420 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 235, Coverage: 19, minDepth: 5 [pilon] Confirmed 197 of 420 bases (46.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7941_length_420_cov_28.752508:1-420 [pilon] Processing NODE_9213_length_357_cov_17.830508:1-357 [pilon] NODE_3574_length_774_cov_1.300153:1-774 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 26, Coverage: 4, minDepth: 5 [pilon] Confirmed 308 of 774 bases (39.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3574_length_774_cov_1.300153:1-774 [pilon] Processing NODE_6338_length_514_cov_22.473282:1-514 [pilon] NODE_4623_length_650_cov_23.873346:1-650 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 298, Coverage: 39, minDepth: 10 [pilon] Confirmed 530 of 650 bases (81.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4623_length_650_cov_23.873346:1-650 [pilon] Processing NODE_14886_length_243_cov_6.836066:1-243 [pilon] NODE_688_length_1711_cov_19.593711:1-1711 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 699, Coverage: 45, minDepth: 11 [pilon] Confirmed 1025 of 1711 bases (59.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_688_length_1711_cov_19.593711:1-1711 [pilon] Processing NODE_2474_length_971_cov_20.278824:1-971 [pilon] NODE_1262_length_1357_cov_23.876214:1-1357 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 657, Coverage: 49, minDepth: 12 [pilon] Confirmed 1120 of 1357 bases (82.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1262_length_1357_cov_23.876214:1-1357 [pilon] Processing NODE_9336_length_353_cov_15.797414:1-353 [pilon] NODE_153_length_2702_cov_20.320031:1-2702 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 1263, Coverage: 52, minDepth: 13 [pilon] Confirmed 1824 of 2702 bases (67.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_153_length_2702_cov_20.320031:1-2702 [pilon] Processing NODE_8525_length_393_cov_6.724265:1-393 [pilon] NODE_6396_length_510_cov_20.848329:1-510 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 172, Coverage: 25, minDepth: 6 [pilon] Confirmed 424 of 510 bases (83.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6396_length_510_cov_20.848329:1-510 [pilon] Processing NODE_3933_length_723_cov_21.091362:1-723 [pilon] NODE_9707_length_338_cov_11.562212:1-338 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 75, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 338 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9707_length_338_cov_11.562212:1-338 [pilon] Processing NODE_13861_length_243_cov_15.180328:1-243 [pilon] NODE_9400_length_350_cov_29.786026:1-350 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 153, Coverage: 14, minDepth: 5 [pilon] Confirmed 233 of 350 bases (66.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9400_length_350_cov_29.786026:1-350 [pilon] Processing NODE_12056_length_245_cov_24.548387:1-245 [pilon] NODE_11368_length_269_cov_7.932432:1-269 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 269 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11368_length_269_cov_7.932432:1-269 [pilon] Processing NODE_13888_length_243_cov_15.008197:1-243 [pilon] NODE_1027_length_1482_cov_3.183688:1-1482 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 117, Coverage: 10, minDepth: 5 [pilon] Confirmed 1117 of 1482 bases (75.37%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1027_length_1482_cov_3.183688:1-1482 [pilon] Processing NODE_14135_length_243_cov_13.245902:1-243 [pilon] NODE_13500_length_243_cov_18.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13500_length_243_cov_18.352459:1-243 [pilon] Processing NODE_1708_length_1178_cov_2.294229:1-1178 [pilon] NODE_13753_length_243_cov_16.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13753_length_243_cov_16.016393:1-243 [pilon] Processing NODE_11273_length_273_cov_12.434211:1-273 [pilon] NODE_10048_length_323_cov_54.594059:1-323 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 248, Coverage: 41, minDepth: 10 [pilon] Confirmed 299 of 323 bases (92.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10048_length_323_cov_54.594059:1-323 [pilon] Processing NODE_15110_length_217_cov_1.927083:1-217 [pilon] NODE_6709_length_489_cov_38.258152:1-489 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 290, Coverage: 22, minDepth: 6 [pilon] Confirmed 394 of 489 bases (80.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6709_length_489_cov_38.258152:1-489 [pilon] Processing NODE_7450_length_446_cov_1.504615:1-446 [pilon] NODE_566_length_1841_cov_3.172093:1-1841 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 139, Coverage: 10, minDepth: 5 [pilon] Confirmed 1549 of 1841 bases (84.14%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_566_length_1841_cov_3.172093:1-1841 [pilon] Processing NODE_13891_length_243_cov_14.991803:1-243 [pilon] NODE_4839_length_631_cov_29.374510:1-631 log: [pilon] NODE_4466_length_664_cov_26.075506:1-664 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 395, Coverage: 42, minDepth: 11 [pilon] Confirmed 478 of 664 bases (71.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4466_length_664_cov_26.075506:1-664 [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 344, Coverage: 46, minDepth: 12 [pilon] Confirmed 516 of 631 bases (81.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4839_length_631_cov_29.374510:1-631 [pilon] Processing NODE_10364_length_310_cov_18.719577:1-310 [pilon] Processing NODE_8613_length_387_cov_25.778195:1-387 [pilon] NODE_6694_length_491_cov_0.545946:1-491 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 491 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6694_length_491_cov_0.545946:1-491 [pilon] Processing NODE_1447_length_1281_cov_17.152586:1-1281 [pilon] NODE_10107_length_321_cov_17.350000:1-321 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 87, Coverage: 7, minDepth: 5 [pilon] Confirmed 185 of 321 bases (57.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10107_length_321_cov_17.350000:1-321 [pilon] Processing NODE_13602_length_243_cov_17.483607:1-243 [pilon] NODE_336_length_2143_cov_25.504451:1-2143 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 1243, Coverage: 44, minDepth: 11 [pilon] Confirmed 1737 of 2143 bases (81.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_336_length_2143_cov_25.504451:1-2143 [pilon] Processing NODE_4595_length_654_cov_6.377111:1-654 [pilon] NODE_14886_length_243_cov_6.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_14624_length_243_cov_9.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14886_length_243_cov_6.836066:1-243 [pilon] Finished processing NODE_14624_length_243_cov_9.229508:1-243 [pilon] Processing NODE_8069_length_414_cov_55.170648:1-414 [pilon] Processing NODE_14133_length_243_cov_13.270492:1-243 [pilon] NODE_2474_length_971_cov_20.278824:1-971 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 391, Coverage: 41, minDepth: 10 [pilon] Confirmed 829 of 971 bases (85.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2474_length_971_cov_20.278824:1-971 [pilon] Processing NODE_7175_length_461_cov_3.155882:1-461 [pilon] NODE_8427_length_398_cov_21.552347:1-398 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 135, Coverage: 11, minDepth: 5 [pilon] Confirmed 251 of 398 bases (63.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8427_length_398_cov_21.552347:1-398 [pilon] Processing NODE_9790_length_335_cov_9.056075:1-335 [pilon] NODE_9213_length_357_cov_17.830508:1-357 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 92, Coverage: 10, minDepth: 5 [pilon] Confirmed 215 of 357 bases (60.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9213_length_357_cov_17.830508:1-357 [pilon] Processing NODE_12712_length_243_cov_26.073770:1-243 [pilon] NODE_2005_length_1085_cov_27.278008:1-1085 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 668, Coverage: 64, minDepth: 16 [pilon] Confirmed 902 of 1085 bases (83.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2005_length_1085_cov_27.278008:1-1085 [pilon] Processing NODE_6493_length_504_cov_11.441253:1-504 [pilon] NODE_4240_length_689_cov_2.570423:1-689 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 41, Coverage: 8, minDepth: 5 [pilon] Confirmed 415 of 689 bases (60.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4240_length_689_cov_2.570423:1-689 [pilon] NODE_7367_length_450_cov_13.407295:1-450 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 107, Coverage: 15, minDepth: 5 [pilon] Confirmed 292 of 450 bases (64.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_10358_length_311_cov_10.573684:1-311 [pilon] Finished processing NODE_7367_length_450_cov_13.407295:1-450 [pilon] Processing NODE_12417_length_243_cov_30.631148:1-243 [pilon] NODE_8414_length_399_cov_11.928058:1-399 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 73, Coverage: 15, minDepth: 5 [pilon] Confirmed 308 of 399 bases (77.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8414_length_399_cov_11.928058:1-399 [pilon] Processing NODE_5684_length_564_cov_16.097065:1-564 [pilon] NODE_3988_length_716_cov_8.137815:1-716 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 115, Coverage: 10, minDepth: 5 [pilon] Confirmed 469 of 716 bases (65.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3988_length_716_cov_8.137815:1-716 [pilon] Processing NODE_5532_length_575_cov_13.026432:1-575 [pilon] NODE_9336_length_353_cov_15.797414:1-353 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 90, Coverage: 12, minDepth: 5 [pilon] Confirmed 253 of 353 bases (71.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9336_length_353_cov_15.797414:1-353 [pilon] Processing NODE_7463_length_445_cov_3.425926:1-445 [pilon] NODE_8525_length_393_cov_6.724265:1-393 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 251 of 393 bases (63.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8525_length_393_cov_6.724265:1-393 [pilon] Processing NODE_4370_length_674_cov_10.325497:1-674 [pilon] NODE_13861_length_243_cov_15.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13861_length_243_cov_15.180328:1-243 [pilon] Processing NODE_2596_length_946_cov_16.175758:1-946 [pilon] NODE_12056_length_245_cov_24.548387:1-245 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 68, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 245 bases (53.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12056_length_245_cov_24.548387:1-245 [pilon] Processing NODE_12706_length_243_cov_26.122951:1-243 [pilon] NODE_3933_length_723_cov_21.091362:1-723 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 414, Coverage: 61, minDepth: 15 [pilon] Confirmed 595 of 723 bases (82.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3933_length_723_cov_21.091362:1-723 [pilon] Processing NODE_12552_length_243_cov_28.270492:1-243 [pilon] NODE_13888_length_243_cov_15.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13888_length_243_cov_15.008197:1-243 [pilon] Processing NODE_3363_length_803_cov_1.129032:1-803 [pilon] NODE_14135_length_243_cov_13.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14135_length_243_cov_13.245902:1-243 [pilon] Processing NODE_4596_length_654_cov_5.947467:1-654 [pilon] NODE_6338_length_514_cov_22.473282:1-514 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 192, Coverage: 28, minDepth: 7 [pilon] Confirmed 320 of 514 bases (62.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6338_length_514_cov_22.473282:1-514 [pilon] Processing NODE_14187_length_243_cov_12.721311:1-243 [pilon] Processing NODE_3390_length_799_cov_8.343658:1-799 [pilon] NODE_1708_length_1178_cov_2.294229:1-1178 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 79, Coverage: 9, minDepth: 5 [pilon] Confirmed 790 of 1178 bases (67.06%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1708_length_1178_cov_2.294229:1-1178 [pilon] Processing NODE_2612_length_943_cov_4.444039:1-943 [pilon] NODE_8069_length_414_cov_55.170648:1-414 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 355, Coverage: 66, minDepth: 17 [pilon] Confirmed 353 of 414 bases (85.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8069_length_414_cov_55.170648:1-414 [pilon] Processing NODE_3599_length_768_cov_41.355487:1-768 [pilon] NODE_8613_length_387_cov_25.778195:1-387 log: [pilon] NODE_14133_length_243_cov_13.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14133_length_243_cov_13.270492:1-243 [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 159, Coverage: 19, minDepth: 5 [pilon] Confirmed 268 of 387 bases (69.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8613_length_387_cov_25.778195:1-387 [pilon] Processing NODE_11710_length_255_cov_30.208955:1-255 [pilon] Processing NODE_83_length_3154_cov_4.627432:1-3154 [pilon] NODE_11273_length_273_cov_12.434211:1-273 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 44, Coverage: 2, minDepth: 5 [pilon] Confirmed 12 of 273 bases (4.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11273_length_273_cov_12.434211:1-273 [pilon] Processing NODE_7918_length_422_cov_13.970100:1-422 [pilon] NODE_13602_length_243_cov_17.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13602_length_243_cov_17.483607:1-243 [pilon] Processing NODE_8643_length_386_cov_11.822642:1-386 [pilon] NODE_10364_length_310_cov_18.719577:1-310 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 59, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 310 bases (40.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10364_length_310_cov_18.719577:1-310 [pilon] Processing NODE_8953_length_369_cov_9.629032:1-369 [pilon] NODE_13891_length_243_cov_14.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13891_length_243_cov_14.991803:1-243 [pilon] Processing NODE_9002_length_366_cov_25.963265:1-366 [pilon] NODE_15110_length_217_cov_1.927083:1-217 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 217 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15110_length_217_cov_1.927083:1-217 [pilon] Processing NODE_1883_length_1118_cov_9.908726:1-1118 [pilon] NODE_7450_length_446_cov_1.504615:1-446 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 110 of 446 bases (24.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7450_length_446_cov_1.504615:1-446 [pilon] Processing NODE_11701_length_255_cov_43.902985:1-255 [pilon] NODE_7175_length_461_cov_3.155882:1-461 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 30, Coverage: 7, minDepth: 5 [pilon] Confirmed 360 of 461 bases (78.09%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7175_length_461_cov_3.155882:1-461 [pilon] Processing NODE_17_length_5332_cov_17.927269:1-5332 [pilon] NODE_4595_length_654_cov_6.377111:1-654 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 87, Coverage: 10, minDepth: 5 [pilon] Confirmed 418 of 654 bases (63.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4595_length_654_cov_6.377111:1-654 [pilon] Processing NODE_11350_length_270_cov_15.181208:1-270 [pilon] NODE_1447_length_1281_cov_17.152586:1-1281 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 488, Coverage: 36, minDepth: 9 [pilon] Confirmed 1178 of 1281 bases (91.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1447_length_1281_cov_17.152586:1-1281 [pilon] Processing NODE_9091_length_362_cov_13.995851:1-362 [pilon] NODE_12712_length_243_cov_26.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_9790_length_335_cov_9.056075:1-335 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 50, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 335 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9790_length_335_cov_9.056075:1-335 [pilon] NODE_10358_length_311_cov_10.573684:1-311 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 39, Coverage: 5, minDepth: 5 [pilon] Confirmed 153 of 311 bases (49.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10358_length_311_cov_10.573684:1-311 [pilon] NODE_12417_length_243_cov_30.631148:1-243 log: [pilon] Processing NODE_13704_length_243_cov_16.393443:1-243 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12417_length_243_cov_30.631148:1-243 [pilon] NODE_7463_length_445_cov_3.425926:1-445 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 36, Coverage: 9, minDepth: 5 [pilon] Confirmed 353 of 445 bases (79.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7463_length_445_cov_3.425926:1-445 [pilon] Processing NODE_3167_length_838_cov_20.970711:1-838 [pilon] NODE_12706_length_243_cov_26.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12706_length_243_cov_26.122951:1-243 [pilon] Finished processing NODE_12712_length_243_cov_26.073770:1-243 [pilon] Processing NODE_2981_length_877_cov_14.246032:1-877 [pilon] Processing NODE_10288_length_314_cov_14.968912:1-314 [pilon] Processing NODE_8176_length_409_cov_50.055556:1-409 [pilon] Processing NODE_4491_length_662_cov_42.397412:1-662 [pilon] NODE_5684_length_564_cov_16.097065:1-564 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 167, Coverage: 28, minDepth: 7 [pilon] Confirmed 464 of 564 bases (82.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5684_length_564_cov_16.097065:1-564 [pilon] Processing NODE_1790_length_1150_cov_21.126336:1-1150 [pilon] NODE_12552_length_243_cov_28.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12552_length_243_cov_28.270492:1-243 [pilon] Processing NODE_14236_length_243_cov_12.327869:1-243 [pilon] NODE_5532_length_575_cov_13.026432:1-575 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 138, Coverage: 15, minDepth: 5 [pilon] Confirmed 483 of 575 bases (84.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5532_length_575_cov_13.026432:1-575 [pilon] Processing NODE_10803_length_293_cov_12.843023:1-293 [pilon] NODE_2596_length_946_cov_16.175758:1-946 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 368, Coverage: 18, minDepth: 5 [pilon] Confirmed 767 of 946 bases (81.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2596_length_946_cov_16.175758:1-946 [pilon] Processing NODE_7166_length_461_cov_49.311765:1-461 [pilon] NODE_7918_length_422_cov_13.970100:1-422 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 101, Coverage: 12, minDepth: 5 [pilon] Confirmed 302 of 422 bases (71.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7918_length_422_cov_13.970100:1-422 [pilon] Processing NODE_4577_length_655_cov_14.893258:1-655 [pilon] NODE_6493_length_504_cov_11.441253:1-504 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 116, Coverage: 10, minDepth: 5 [pilon] Confirmed 345 of 504 bases (68.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6493_length_504_cov_11.441253:1-504 [pilon] Processing NODE_13279_length_243_cov_20.377049:1-243 [pilon] NODE_3599_length_768_cov_41.355487:1-768 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 646, Coverage: 58, minDepth: 15 [pilon] Confirmed 559 of 768 bases (72.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3599_length_768_cov_41.355487:1-768 [pilon] Processing NODE_3180_length_835_cov_5.985994:1-835 [pilon] NODE_14187_length_243_cov_12.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14187_length_243_cov_12.721311:1-243 [pilon] Processing NODE_8349_length_402_cov_30.587189:1-402 [pilon] NODE_3363_length_803_cov_1.129032:1-803 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 273 of 803 bases (34.00%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3363_length_803_cov_1.129032:1-803 [pilon] Processing NODE_2195_length_1035_cov_27.537199:1-1035 [pilon] NODE_4596_length_654_cov_5.947467:1-654 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 75, Coverage: 13, minDepth: 5 [pilon] Confirmed 577 of 654 bases (88.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4596_length_654_cov_5.947467:1-654 [pilon] Processing NODE_446_length_1974_cov_7.869941:1-1974 [pilon] NODE_4370_length_674_cov_10.325497:1-674 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 128, Coverage: 25, minDepth: 6 [pilon] Confirmed 575 of 674 bases (85.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4370_length_674_cov_10.325497:1-674 [pilon] Processing NODE_7017_length_470_cov_45.656160:1-470 [pilon] NODE_3390_length_799_cov_8.343658:1-799 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 129, Coverage: 19, minDepth: 5 [pilon] Confirmed 697 of 799 bases (87.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3390_length_799_cov_8.343658:1-799 [pilon] Processing NODE_9643_length_339_cov_30.720183:1-339 [pilon] NODE_9002_length_366_cov_25.963265:1-366 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 104, Coverage: 15, minDepth: 5 [pilon] Confirmed 234 of 366 bases (63.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9002_length_366_cov_25.963265:1-366 [pilon] Processing NODE_9022_length_365_cov_54.323770:1-365 [pilon] NODE_2612_length_943_cov_4.444039:1-943 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 91, Coverage: 12, minDepth: 5 [pilon] Confirmed 758 of 943 bases (80.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2612_length_943_cov_4.444039:1-943 [pilon] Processing NODE_13338_length_243_cov_19.926230:1-243 [pilon] NODE_11710_length_255_cov_30.208955:1-255 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 93, Coverage: 12, minDepth: 5 [pilon] Confirmed 220 of 255 bases (86.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11710_length_255_cov_30.208955:1-255 [pilon] Processing NODE_11901_length_249_cov_18.109375:1-249 [pilon] NODE_8643_length_386_cov_11.822642:1-386 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 68, Coverage: 7, minDepth: 5 [pilon] Confirmed 205 of 386 bases (53.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8643_length_386_cov_11.822642:1-386 [pilon] Processing NODE_7973_length_419_cov_33.946309:1-419 [pilon] NODE_83_length_3154_cov_4.627432:1-3154 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 350, Coverage: 14, minDepth: 5 [pilon] Confirmed 2808 of 3154 bases (89.03%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_83_length_3154_cov_4.627432:1-3154 [pilon] Processing NODE_8262_length_406_cov_0.964912:1-406 [pilon] NODE_8953_length_369_cov_9.629032:1-369 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 52, Coverage: 8, minDepth: 5 [pilon] Confirmed 269 of 369 bases (72.90%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8953_length_369_cov_9.629032:1-369 [pilon] Processing NODE_9073_length_363_cov_16.322314:1-363 [pilon] NODE_1883_length_1118_cov_9.908726:1-1118 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 248, Coverage: 23, minDepth: 6 [pilon] Confirmed 1028 of 1118 bases (91.95%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1883_length_1118_cov_9.908726:1-1118 [pilon] Processing NODE_12818_length_243_cov_24.836066:1-243 [pilon] NODE_11701_length_255_cov_43.902985:1-255 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 126, Coverage: 9, minDepth: 5 [pilon] Confirmed 216 of 255 bases (84.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11701_length_255_cov_43.902985:1-255 [pilon] Processing NODE_7864_length_424_cov_18.366337:1-424 [pilon] NODE_11350_length_270_cov_15.181208:1-270 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 50, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 270 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11350_length_270_cov_15.181208:1-270 [pilon] Processing NODE_1189_length_1402_cov_4.219360:1-1402 [pilon] NODE_9091_length_362_cov_13.995851:1-362 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 84, Coverage: 13, minDepth: 5 [pilon] Confirmed 294 of 362 bases (81.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9091_length_362_cov_13.995851:1-362 [pilon] Processing NODE_5529_length_575_cov_15.876652:1-575 [pilon] NODE_1790_length_1150_cov_21.126336:1-1150 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 567, Coverage: 26, minDepth: 7 [pilon] Confirmed 927 of 1150 bases (80.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1790_length_1150_cov_21.126336:1-1150 [pilon] Processing NODE_3399_length_798_cov_17.940916:1-798 [pilon] NODE_13704_length_243_cov_16.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13704_length_243_cov_16.393443:1-243 [pilon] Processing NODE_908_length_1551_cov_13.099301:1-1551 [pilon] NODE_10288_length_314_cov_14.968912:1-314 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 70, Coverage: 2, minDepth: 5 [pilon] Confirmed 66 of 314 bases (21.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10288_length_314_cov_14.968912:1-314 [pilon] Processing NODE_7051_length_468_cov_1.680115:1-468 [pilon] NODE_17_length_5332_cov_17.927269:1-5332 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 2185, Coverage: 53, minDepth: 13 [pilon] Confirmed 4710 of 5332 bases (88.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_17_length_5332_cov_17.927269:1-5332 [pilon] Processing NODE_11379_length_268_cov_9.108844:1-268 [pilon] NODE_10803_length_293_cov_12.843023:1-293 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 45, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 293 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10803_length_293_cov_12.843023:1-293 [pilon] Processing NODE_13676_length_243_cov_16.762295:1-243 [pilon] NODE_14236_length_243_cov_12.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14236_length_243_cov_12.327869:1-243 [pilon] Processing NODE_14666_length_243_cov_8.877049:1-243 [pilon] NODE_3167_length_838_cov_20.970711:1-838 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 405, Coverage: 40, minDepth: 10 [pilon] Confirmed 786 of 838 bases (93.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3167_length_838_cov_20.970711:1-838 [pilon] Processing NODE_13230_length_243_cov_20.827869:1-243 [pilon] NODE_2981_length_877_cov_14.246032:1-877 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 279, Coverage: 28, minDepth: 7 [pilon] Confirmed 519 of 877 bases (59.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2981_length_877_cov_14.246032:1-877 [pilon] Processing NODE_8708_length_382_cov_8.176245:1-382 [pilon] NODE_9022_length_365_cov_54.323770:1-365 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 310, Coverage: 54, minDepth: 14 [pilon] Confirmed 326 of 365 bases (89.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9022_length_365_cov_54.323770:1-365 [pilon] Processing NODE_4315_length_679_cov_3.960573:1-679 [pilon] NODE_8176_length_409_cov_50.055556:1-409 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 328, Coverage: 61, minDepth: 15 [pilon] Confirmed 355 of 409 bases (86.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8176_length_409_cov_50.055556:1-409 [pilon] Processing NODE_3923_length_725_cov_1.571192:1-725 [pilon] NODE_4491_length_662_cov_42.397412:1-662 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 536, Coverage: 62, minDepth: 16 [pilon] Confirmed 530 of 662 bases (80.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4491_length_662_cov_42.397412:1-662 [pilon] Processing NODE_2350_length_1000_cov_28.688282:1-1000 [pilon] NODE_4577_length_655_cov_14.893258:1-655 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 224, Coverage: 34, minDepth: 9 [pilon] Confirmed 604 of 655 bases (92.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4577_length_655_cov_14.893258:1-655 [pilon] Processing NODE_1882_length_1118_cov_25.177533:1-1118 [pilon] NODE_3180_length_835_cov_5.985994:1-835 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 113, Coverage: 16, minDepth: 5 [pilon] Confirmed 721 of 835 bases (86.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3180_length_835_cov_5.985994:1-835 [pilon] Processing NODE_14254_length_243_cov_12.229508:1-243 [pilon] NODE_7166_length_461_cov_49.311765:1-461 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 361, Coverage: 56, minDepth: 14 [pilon] Confirmed 421 of 461 bases (91.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7166_length_461_cov_49.311765:1-461 [pilon] Processing NODE_14176_length_243_cov_12.836066:1-243 [pilon] NODE_8349_length_402_cov_30.587189:1-402 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 204, Coverage: 25, minDepth: 6 [pilon] Confirmed 273 of 402 bases (67.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8349_length_402_cov_30.587189:1-402 [pilon] Processing NODE_7861_length_424_cov_22.676568:1-424 [pilon] NODE_13279_length_243_cov_20.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13279_length_243_cov_20.377049:1-243 [pilon] Processing NODE_10160_length_318_cov_32.644670:1-318 [pilon] NODE_9643_length_339_cov_30.720183:1-339 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 127, Coverage: 6, minDepth: 5 [pilon] Confirmed 160 of 339 bases (47.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9643_length_339_cov_30.720183:1-339 [pilon] Processing NODE_14458_length_243_cov_10.622951:1-243 [pilon] NODE_2195_length_1035_cov_27.537199:1-1035 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 586, Coverage: 41, minDepth: 10 [pilon] Confirmed 886 of 1035 bases (85.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2195_length_1035_cov_27.537199:1-1035 [pilon] Processing NODE_1823_length_1137_cov_28.084646:1-1137 [pilon] NODE_7017_length_470_cov_45.656160:1-470 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 377, Coverage: 74, minDepth: 19 [pilon] Confirmed 403 of 470 bases (85.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7017_length_470_cov_45.656160:1-470 [pilon] Processing NODE_7963_length_420_cov_7.464883:1-420 [pilon] NODE_446_length_1974_cov_7.869941:1-1974 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 422, Coverage: 18, minDepth: 5 [pilon] Confirmed 1809 of 1974 bases (91.64%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_446_length_1974_cov_7.869941:1-1974 [pilon] Processing NODE_15019_length_243_cov_5.204918:1-243 [pilon] NODE_13338_length_243_cov_19.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13338_length_243_cov_19.926230:1-243 [pilon] Processing NODE_15174_length_174_cov_12.943396:1-174 [pilon] NODE_12818_length_243_cov_24.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12818_length_243_cov_24.836066:1-243 [pilon] Processing NODE_9675_length_339_cov_13.729358:1-339 [pilon] NODE_9073_length_363_cov_16.322314:1-363 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 66, Coverage: 3, minDepth: 5 [pilon] Confirmed 126 of 363 bases (34.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9073_length_363_cov_16.322314:1-363 [pilon] Processing NODE_4525_length_659_cov_12.416357:1-659 [pilon] NODE_11901_length_249_cov_18.109375:1-249 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 43, Coverage: 4, minDepth: 5 [pilon] Confirmed 122 of 249 bases (49.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11901_length_249_cov_18.109375:1-249 [pilon] Processing NODE_11843_length_252_cov_10.312977:1-252 [pilon] NODE_5529_length_575_cov_15.876652:1-575 log: [pilon] NODE_7864_length_424_cov_18.366337:1-424 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 120, Coverage: 21, minDepth: 5 [pilon] Confirmed 316 of 424 bases (74.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7864_length_424_cov_18.366337:1-424 [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 197, Coverage: 28, minDepth: 7 [pilon] Confirmed 349 of 575 bases (60.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_1781_length_1153_cov_11.556202:1-1153 [pilon] Finished processing NODE_5529_length_575_cov_15.876652:1-575 [pilon] Processing NODE_13847_length_243_cov_15.327869:1-243 [pilon] NODE_7973_length_419_cov_33.946309:1-419 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 229, Coverage: 37, minDepth: 9 [pilon] Confirmed 352 of 419 bases (84.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_8262_length_406_cov_0.964912:1-406 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 406 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8262_length_406_cov_0.964912:1-406 [pilon] NODE_1189_length_1402_cov_4.219360:1-1402 log: [pilon] Processing NODE_3392_length_799_cov_2.249263:1-799 [pilon] Finished processing NODE_7973_length_419_cov_33.946309:1-419 [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 132, Coverage: 12, minDepth: 5 [pilon] Confirmed 1169 of 1402 bases (83.38%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1189_length_1402_cov_4.219360:1-1402 [pilon] Processing NODE_2153_length_1044_cov_26.336945:1-1044 [pilon] NODE_3399_length_798_cov_17.940916:1-798 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 303, Coverage: 34, minDepth: 9 [pilon] Confirmed 460 of 798 bases (57.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3399_length_798_cov_17.940916:1-798 [pilon] Processing NODE_11064_length_281_cov_1.537500:1-281 [pilon] Processing NODE_5407_length_584_cov_0.976242:1-584 [pilon] NODE_908_length_1551_cov_13.099301:1-1551 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 472, Coverage: 28, minDepth: 7 [pilon] Confirmed 1026 of 1551 bases (66.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_908_length_1551_cov_13.099301:1-1551 [pilon] Processing NODE_4542_length_658_cov_1.195531:1-658 [pilon] NODE_4315_length_679_cov_3.960573:1-679 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 79, Coverage: 12, minDepth: 5 [pilon] Confirmed 591 of 679 bases (87.04%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4315_length_679_cov_3.960573:1-679 [pilon] Processing NODE_8503_length_393_cov_34.411765:1-393 [pilon] NODE_13230_length_243_cov_20.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13230_length_243_cov_20.827869:1-243 [pilon] Processing NODE_9589_length_342_cov_18.049774:1-342 [pilon] NODE_11379_length_268_cov_9.108844:1-268 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 268 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11379_length_268_cov_9.108844:1-268 [pilon] Processing NODE_5156_length_605_cov_22.785124:1-605 [pilon] NODE_7051_length_468_cov_1.680115:1-468 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 20, Coverage: 6, minDepth: 5 [pilon] Confirmed 296 of 468 bases (63.25%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7051_length_468_cov_1.680115:1-468 [pilon] NODE_13676_length_243_cov_16.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13676_length_243_cov_16.762295:1-243 [pilon] Processing NODE_14330_length_243_cov_11.639344:1-243 [pilon] Processing NODE_4962_length_621_cov_34.146000:1-621 [pilon] NODE_1882_length_1118_cov_25.177533:1-1118 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 591, Coverage: 48, minDepth: 12 [pilon] Confirmed 971 of 1118 bases (86.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1882_length_1118_cov_25.177533:1-1118 [pilon] Processing NODE_11309_length_271_cov_9.226667:1-271 [pilon] NODE_7861_length_424_cov_22.676568:1-424 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 154, Coverage: 25, minDepth: 6 [pilon] Confirmed 332 of 424 bases (78.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7861_length_424_cov_22.676568:1-424 [pilon] Processing NODE_13068_length_243_cov_22.245902:1-243 [pilon] NODE_14666_length_243_cov_8.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14666_length_243_cov_8.877049:1-243 [pilon] Processing NODE_11823_length_252_cov_16.404580:1-252 [pilon] NODE_14176_length_243_cov_12.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14176_length_243_cov_12.836066:1-243 [pilon] Processing NODE_12535_length_243_cov_28.532787:1-243 [pilon] NODE_8708_length_382_cov_8.176245:1-382 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 42, Coverage: 6, minDepth: 5 [pilon] Confirmed 188 of 382 bases (49.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8708_length_382_cov_8.176245:1-382 [pilon] Processing NODE_2965_length_880_cov_12.959157:1-880 [pilon] NODE_3923_length_725_cov_1.571192:1-725 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 259 of 725 bases (35.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3923_length_725_cov_1.571192:1-725 [pilon] Processing NODE_13601_length_243_cov_17.491803:1-243 [pilon] NODE_2350_length_1000_cov_28.688282:1-1000 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 585, Coverage: 60, minDepth: 15 [pilon] Confirmed 786 of 1000 bases (78.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2350_length_1000_cov_28.688282:1-1000 [pilon] Processing NODE_11835_length_252_cov_11.984733:1-252 [pilon] NODE_14458_length_243_cov_10.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_14254_length_243_cov_12.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14254_length_243_cov_12.229508:1-243 [pilon] Finished processing NODE_14458_length_243_cov_10.622951:1-243 [pilon] Processing NODE_4792_length_635_cov_20.966926:1-635 [pilon] Processing NODE_2214_length_1030_cov_2.966997:1-1030 [pilon] NODE_7963_length_420_cov_7.464883:1-420 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 420 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7963_length_420_cov_7.464883:1-420 [pilon] Processing NODE_6299_length_518_cov_16.012594:1-518 [pilon] NODE_15174_length_174_cov_12.943396:1-174 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 174 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15174_length_174_cov_12.943396:1-174 [pilon] Processing NODE_6113_length_531_cov_13.012195:1-531 [pilon] NODE_15019_length_243_cov_5.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15019_length_243_cov_5.204918:1-243 [pilon] Processing NODE_2030_length_1078_cov_22.609195:1-1078 [pilon] NODE_1823_length_1137_cov_28.084646:1-1137 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 755, Coverage: 44, minDepth: 11 [pilon] Confirmed 900 of 1137 bases (79.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1823_length_1137_cov_28.084646:1-1137 [pilon] Processing NODE_10132_length_320_cov_53.145729:1-320 [pilon] NODE_11064_length_281_cov_1.537500:1-281 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 281 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11064_length_281_cov_1.537500:1-281 [pilon] Processing NODE_13836_length_243_cov_15.368852:1-243 [pilon] NODE_10160_length_318_cov_32.644670:1-318 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 145, Coverage: 12, minDepth: 5 [pilon] Confirmed 219 of 318 bases (68.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10160_length_318_cov_32.644670:1-318 [pilon] Processing NODE_2698_length_929_cov_3.533416:1-929 [pilon] NODE_11843_length_252_cov_10.312977:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11843_length_252_cov_10.312977:1-252 [pilon] Processing NODE_8039_length_416_cov_22.267797:1-416 [pilon] NODE_11309_length_271_cov_9.226667:1-271 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 32, Coverage: 2, minDepth: 5 [pilon] Confirmed 17 of 271 bases (6.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11309_length_271_cov_9.226667:1-271 [pilon] Processing NODE_344_length_2132_cov_19.515167:1-2132 [pilon] NODE_13847_length_243_cov_15.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13847_length_243_cov_15.327869:1-243 [pilon] Processing NODE_9667_length_339_cov_16.036697:1-339 [pilon] NODE_9675_length_339_cov_13.729358:1-339 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 64, Coverage: 12, minDepth: 5 [pilon] Confirmed 254 of 339 bases (74.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9675_length_339_cov_13.729358:1-339 [pilon] Processing NODE_3655_length_761_cov_29.812500:1-761 [pilon] NODE_4542_length_658_cov_1.195531:1-658 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 228 of 658 bases (34.65%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4542_length_658_cov_1.195531:1-658 [pilon] NODE_5407_length_584_cov_0.976242:1-584 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 584 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5407_length_584_cov_0.976242:1-584 [pilon] Processing NODE_6162_length_527_cov_37.857143:1-527 [pilon] Processing NODE_4409_length_670_cov_64.930783:1-670 [pilon] NODE_2153_length_1044_cov_26.336945:1-1044 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 569, Coverage: 59, minDepth: 15 [pilon] Confirmed 958 of 1044 bases (91.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2153_length_1044_cov_26.336945:1-1044 [pilon] Processing NODE_9_length_5980_cov_3.299198:1-5980 [pilon] NODE_5156_length_605_cov_22.785124:1-605 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 238, Coverage: 35, minDepth: 9 [pilon] Confirmed 427 of 605 bases (70.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5156_length_605_cov_22.785124:1-605 [pilon] Processing NODE_5206_length_601_cov_3.629167:1-601 [pilon] NODE_3392_length_799_cov_2.249263:1-799 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 40, Coverage: 6, minDepth: 5 [pilon] Confirmed 513 of 799 bases (64.21%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3392_length_799_cov_2.249263:1-799 [pilon] Processing NODE_2848_length_902_cov_30.494238:1-902 [pilon] NODE_4525_length_659_cov_12.416357:1-659 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 150, Coverage: 11, minDepth: 5 [pilon] Confirmed 468 of 659 bases (71.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4525_length_659_cov_12.416357:1-659 [pilon] Processing NODE_8278_length_405_cov_19.901408:1-405 [pilon] NODE_8503_length_393_cov_34.411765:1-393 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 196, Coverage: 24, minDepth: 6 [pilon] Confirmed 300 of 393 bases (76.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8503_length_393_cov_34.411765:1-393 [pilon] Processing NODE_3428_length_795_cov_1.682493:1-795 [pilon] NODE_11835_length_252_cov_11.984733:1-252 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 31, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_11823_length_252_cov_16.404580:1-252 log: [pilon] NODE_12535_length_243_cov_28.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12535_length_243_cov_28.532787:1-243 [pilon] NODE_13068_length_243_cov_22.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13068_length_243_cov_22.245902:1-243 [pilon] NODE_14330_length_243_cov_11.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14330_length_243_cov_11.639344:1-243 [pilon] Processing NODE_3395_length_798_cov_51.735598:1-798 [pilon] Processing NODE_10870_length_289_cov_13.119048:1-289 [pilon] NODE_13601_length_243_cov_17.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_10698_length_297_cov_31.954545:1-297 [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 46, Coverage: 6, minDepth: 5 [pilon] Confirmed 147 of 252 bases (58.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11823_length_252_cov_16.404580:1-252 [pilon] Finished processing NODE_11835_length_252_cov_11.984733:1-252 [pilon] NODE_9589_length_342_cov_18.049774:1-342 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 61, Coverage: 2, minDepth: 5 [pilon] Confirmed 85 of 342 bases (24.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_13836_length_243_cov_15.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13601_length_243_cov_17.491803:1-243 [pilon] Processing NODE_10519_length_303_cov_36.791209:1-303 [pilon] Finished processing NODE_13836_length_243_cov_15.368852:1-243 [pilon] Processing NODE_3316_length_812_cov_25.328509:1-812 [pilon] NODE_6113_length_531_cov_13.012195:1-531 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 127, Coverage: 16, minDepth: 5 [pilon] Confirmed 378 of 531 bases (71.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6113_length_531_cov_13.012195:1-531 [pilon] Processing NODE_13199_length_243_cov_21.098361:1-243 [pilon] Finished processing NODE_9589_length_342_cov_18.049774:1-342 [pilon] Processing NODE_1305_length_1339_cov_3.284893:1-1339 [pilon] Processing NODE_1726_length_1171_cov_19.839048:1-1171 [pilon] Processing NODE_1521_length_1251_cov_2.169027:1-1251 [pilon] NODE_2214_length_1030_cov_2.966997:1-1030 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 73, Coverage: 9, minDepth: 5 [pilon] Confirmed 668 of 1030 bases (64.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2214_length_1030_cov_2.966997:1-1030 [pilon] Processing NODE_8787_length_378_cov_14.338521:1-378 [pilon] NODE_2965_length_880_cov_12.959157:1-880 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 249, Coverage: 33, minDepth: 8 [pilon] Confirmed 718 of 880 bases (81.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2965_length_880_cov_12.959157:1-880 [pilon] Processing NODE_13481_length_243_cov_18.565574:1-243 [pilon] NODE_4792_length_635_cov_20.966926:1-635 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 273, Coverage: 34, minDepth: 9 [pilon] Confirmed 561 of 635 bases (88.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4792_length_635_cov_20.966926:1-635 [pilon] Processing NODE_5204_length_601_cov_12.783333:1-601 [pilon] NODE_1781_length_1153_cov_11.556202:1-1153 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 360, Coverage: 35, minDepth: 9 [pilon] Confirmed 882 of 1153 bases (76.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1781_length_1153_cov_11.556202:1-1153 [pilon] Processing NODE_9294_length_354_cov_17.442060:1-354 [pilon] NODE_10132_length_320_cov_53.145729:1-320 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 245, Coverage: 43, minDepth: 11 [pilon] Confirmed 281 of 320 bases (87.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10132_length_320_cov_53.145729:1-320 [pilon] Processing NODE_10174_length_318_cov_18.928934:1-318 [pilon] NODE_4962_length_621_cov_34.146000:1-621 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 478, Coverage: 33, minDepth: 8 [pilon] Confirmed 405 of 621 bases (65.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4962_length_621_cov_34.146000:1-621 [pilon] Processing NODE_6910_length_477_cov_8.662921:1-477 [pilon] NODE_6299_length_518_cov_16.012594:1-518 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 138, Coverage: 20, minDepth: 5 [pilon] Confirmed 415 of 518 bases (80.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6299_length_518_cov_16.012594:1-518 [pilon] Processing NODE_1593_length_1221_cov_10.008182:1-1221 [pilon] NODE_8039_length_416_cov_22.267797:1-416 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 138, Coverage: 24, minDepth: 6 [pilon] Confirmed 328 of 416 bases (78.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8039_length_416_cov_22.267797:1-416 [pilon] Processing NODE_4499_length_662_cov_2.404806:1-662 [pilon] NODE_2030_length_1078_cov_22.609195:1-1078 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 651, Coverage: 67, minDepth: 17 [pilon] Confirmed 654 of 1078 bases (60.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2030_length_1078_cov_22.609195:1-1078 [pilon] Processing NODE_13544_length_243_cov_17.967213:1-243 [pilon] NODE_344_length_2132_cov_19.515167:1-2132 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 1018, Coverage: 51, minDepth: 13 [pilon] Confirmed 1917 of 2132 bases (89.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_344_length_2132_cov_19.515167:1-2132 [pilon] Processing NODE_10003_length_325_cov_14.691176:1-325 [pilon] NODE_2698_length_929_cov_3.533416:1-929 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 96, Coverage: 11, minDepth: 5 [pilon] Confirmed 743 of 929 bases (79.98%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2698_length_929_cov_3.533416:1-929 [pilon] Processing NODE_6437_length_507_cov_29.264249:1-507 [pilon] NODE_9_length_5980_cov_3.299198:1-5980 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 548, Coverage: 12, minDepth: 5 [pilon] Confirmed 5639 of 5980 bases (94.30%) [pilon] Corrected 12 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9_length_5980_cov_3.299198:1-5980 [pilon] Processing NODE_11374_length_268_cov_21.231293:1-268 [pilon] NODE_5206_length_601_cov_3.629167:1-601 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 49, Coverage: 11, minDepth: 5 [pilon] Confirmed 482 of 601 bases (80.20%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5206_length_601_cov_3.629167:1-601 [pilon] Processing NODE_2881_length_896_cov_11.824516:1-896 [pilon] NODE_3428_length_795_cov_1.682493:1-795 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 32, Coverage: 5, minDepth: 5 [pilon] Confirmed 339 of 795 bases (42.64%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3428_length_795_cov_1.682493:1-795 [pilon] Processing NODE_7870_length_424_cov_1.118812:1-424 [pilon] NODE_8278_length_405_cov_19.901408:1-405 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 122, Coverage: 17, minDepth: 5 [pilon] Confirmed 288 of 405 bases (71.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8278_length_405_cov_19.901408:1-405 [pilon] Processing NODE_13723_length_243_cov_16.237705:1-243 [pilon] NODE_6162_length_527_cov_37.857143:1-527 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 381, Coverage: 49, minDepth: 12 [pilon] Confirmed 336 of 527 bases (63.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6162_length_527_cov_37.857143:1-527 [pilon] Processing NODE_3877_length_731_cov_3.480328:1-731 [pilon] NODE_3655_length_761_cov_29.812500:1-761 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 488, Coverage: 46, minDepth: 12 [pilon] Confirmed 575 of 761 bases (75.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3655_length_761_cov_29.812500:1-761 [pilon] Processing NODE_703_length_1702_cov_3.328273:1-1702 [pilon] NODE_2848_length_902_cov_30.494238:1-902 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 527, Coverage: 58, minDepth: 15 [pilon] Confirmed 761 of 902 bases (84.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2848_length_902_cov_30.494238:1-902 [pilon] Processing NODE_7570_length_440_cov_1.015674:1-440 [pilon] NODE_13481_length_243_cov_18.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13481_length_243_cov_18.565574:1-243 [pilon] Processing NODE_14427_length_243_cov_10.852459:1-243 [pilon] NODE_4409_length_670_cov_64.930783:1-670 log: [pilon] frags shovill.bam: coverage 124 [pilon] Total Reads: 831, Coverage: 124, minDepth: 31 [pilon] Confirmed 572 of 670 bases (85.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4409_length_670_cov_64.930783:1-670 [pilon] Processing NODE_6641_length_495_cov_1.160428:1-495 [pilon] NODE_9667_length_339_cov_16.036697:1-339 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 86, Coverage: 9, minDepth: 5 [pilon] Confirmed 264 of 339 bases (77.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9667_length_339_cov_16.036697:1-339 [pilon] Processing NODE_6473_length_505_cov_30.781250:1-505 [pilon] NODE_10003_length_325_cov_14.691176:1-325 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 53, Coverage: 5, minDepth: 5 [pilon] Confirmed 178 of 325 bases (54.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10003_length_325_cov_14.691176:1-325 [pilon] Processing NODE_875_length_1579_cov_2.202332:1-1579 [pilon] NODE_1305_length_1339_cov_3.284893:1-1339 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 95, Coverage: 9, minDepth: 5 [pilon] Confirmed 801 of 1339 bases (59.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1305_length_1339_cov_3.284893:1-1339 [pilon] Processing NODE_1934_length_1102_cov_2.221203:1-1102 [pilon] NODE_3395_length_798_cov_51.735598:1-798 log: [pilon] frags shovill.bam: coverage 103 [pilon] Total Reads: 791, Coverage: 103, minDepth: 26 [pilon] Confirmed 675 of 798 bases (84.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3395_length_798_cov_51.735598:1-798 [pilon] Processing NODE_9633_length_340_cov_13.251142:1-340 [pilon] NODE_10519_length_303_cov_36.791209:1-303 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 152, Coverage: 11, minDepth: 5 [pilon] Confirmed 195 of 303 bases (64.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10519_length_303_cov_36.791209:1-303 [pilon] Processing NODE_7824_length_426_cov_14.403279:1-426 [pilon] NODE_3316_length_812_cov_25.328509:1-812 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 418, Coverage: 51, minDepth: 13 [pilon] Confirmed 713 of 812 bases (87.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3316_length_812_cov_25.328509:1-812 [pilon] Processing NODE_536_length_1875_cov_16.790194:1-1875 [pilon] NODE_10870_length_289_cov_13.119048:1-289 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 54, Coverage: 10, minDepth: 5 [pilon] Confirmed 204 of 289 bases (70.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10870_length_289_cov_13.119048:1-289 [pilon] Processing NODE_15003_length_243_cov_5.385246:1-243 [pilon] NODE_6910_length_477_cov_8.662921:1-477 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 62, Coverage: 7, minDepth: 5 [pilon] Confirmed 260 of 477 bases (54.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6910_length_477_cov_8.662921:1-477 [pilon] Processing NODE_7067_length_467_cov_4.823699:1-467 [pilon] NODE_13199_length_243_cov_21.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13199_length_243_cov_21.098361:1-243 [pilon] NODE_8787_length_378_cov_14.338521:1-378 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 52, Coverage: 9, minDepth: 5 [pilon] Confirmed 211 of 378 bases (55.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8787_length_378_cov_14.338521:1-378 [pilon] Processing NODE_12518_length_243_cov_28.811475:1-243 [pilon] NODE_1521_length_1251_cov_2.169027:1-1251 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 76, Coverage: 7, minDepth: 5 [pilon] Confirmed 857 of 1251 bases (68.51%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1521_length_1251_cov_2.169027:1-1251 [pilon] Processing NODE_7252_length_457_cov_2.955357:1-457 [pilon] NODE_9294_length_354_cov_17.442060:1-354 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 89, Coverage: 8, minDepth: 5 [pilon] Confirmed 219 of 354 bases (61.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9294_length_354_cov_17.442060:1-354 [pilon] Processing NODE_4130_length_701_cov_6.239655:1-701 [pilon] NODE_1726_length_1171_cov_19.839048:1-1171 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 519, Coverage: 50, minDepth: 13 [pilon] Confirmed 1052 of 1171 bases (89.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1726_length_1171_cov_19.839048:1-1171 [pilon] Processing NODE_11390_length_267_cov_26.458904:1-267 [pilon] NODE_11374_length_268_cov_21.231293:1-268 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 67, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 268 bases (48.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11374_length_268_cov_21.231293:1-268 [pilon] Processing NODE_1654_length_1199_cov_20.624304:1-1199 [pilon] NODE_10698_length_297_cov_31.954545:1-297 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 107, Coverage: 14, minDepth: 5 [pilon] Confirmed 240 of 297 bases (80.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10698_length_297_cov_31.954545:1-297 [pilon] Processing NODE_10972_length_285_cov_18.817073:1-285 [pilon] NODE_5204_length_601_cov_12.783333:1-601 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 155, Coverage: 30, minDepth: 8 [pilon] Confirmed 427 of 601 bases (71.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5204_length_601_cov_12.783333:1-601 [pilon] Processing NODE_359_length_2111_cov_9.506030:1-2111 [pilon] NODE_10174_length_318_cov_18.928934:1-318 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 89, Coverage: 9, minDepth: 5 [pilon] Confirmed 194 of 318 bases (61.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10174_length_318_cov_18.928934:1-318 [pilon] Processing NODE_12574_length_243_cov_27.942623:1-243 [pilon] NODE_4499_length_662_cov_2.404806:1-662 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 39, Coverage: 7, minDepth: 5 [pilon] Confirmed 406 of 662 bases (61.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4499_length_662_cov_2.404806:1-662 [pilon] Processing NODE_3687_length_756_cov_19.233071:1-756 [pilon] NODE_1593_length_1221_cov_10.008182:1-1221 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 275, Coverage: 21, minDepth: 5 [pilon] Confirmed 1136 of 1221 bases (93.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1593_length_1221_cov_10.008182:1-1221 [pilon] Processing NODE_8114_length_412_cov_33.285223:1-412 [pilon] NODE_13544_length_243_cov_17.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13544_length_243_cov_17.967213:1-243 [pilon] Processing NODE_9447_length_348_cov_16.731278:1-348 [pilon] NODE_6437_length_507_cov_29.264249:1-507 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 224, Coverage: 31, minDepth: 8 [pilon] Confirmed 367 of 507 bases (72.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6437_length_507_cov_29.264249:1-507 [pilon] Processing NODE_7344_length_451_cov_1.633333:1-451 [pilon] NODE_14427_length_243_cov_10.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14427_length_243_cov_10.852459:1-243 [pilon] Processing NODE_8509_length_393_cov_22.908088:1-393 [pilon] NODE_875_length_1579_cov_2.202332:1-1579 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 109, Coverage: 9, minDepth: 5 [pilon] Confirmed 1151 of 1579 bases (72.89%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_875_length_1579_cov_2.202332:1-1579 [pilon] Processing NODE_15033_length_243_cov_5.065574:1-243 [pilon] NODE_3877_length_731_cov_3.480328:1-731 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 53, Coverage: 9, minDepth: 5 [pilon] Confirmed 512 of 731 bases (70.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3877_length_731_cov_3.480328:1-731 [pilon] Processing NODE_12297_length_243_cov_33.188525:1-243 [pilon] NODE_13723_length_243_cov_16.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13723_length_243_cov_16.237705:1-243 [pilon] NODE_7570_length_440_cov_1.015674:1-440 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 440 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_14191_length_243_cov_12.696721:1-243 [pilon] Finished processing NODE_7570_length_440_cov_1.015674:1-440 [pilon] Processing NODE_2454_length_977_cov_1.172897:1-977 [pilon] NODE_2881_length_896_cov_11.824516:1-896 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 207, Coverage: 21, minDepth: 5 [pilon] Confirmed 754 of 896 bases (84.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2881_length_896_cov_11.824516:1-896 [pilon] Processing NODE_11559_length_261_cov_29.785714:1-261 [pilon] NODE_7870_length_424_cov_1.118812:1-424 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 424 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7870_length_424_cov_1.118812:1-424 [pilon] Processing NODE_207_length_2475_cov_2.161003:1-2475 [pilon] NODE_703_length_1702_cov_3.328273:1-1702 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 135, Coverage: 10, minDepth: 5 [pilon] Confirmed 1354 of 1702 bases (79.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_703_length_1702_cov_3.328273:1-1702 [pilon] Processing NODE_9428_length_348_cov_49.030837:1-348 [pilon] NODE_6641_length_495_cov_1.160428:1-495 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 75 of 495 bases (15.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6641_length_495_cov_1.160428:1-495 [pilon] Processing NODE_6283_length_519_cov_1.115578:1-519 [pilon] NODE_1654_length_1199_cov_20.624304:1-1199 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 681, Coverage: 62, minDepth: 16 [pilon] Confirmed 867 of 1199 bases (72.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1654_length_1199_cov_20.624304:1-1199 [pilon] Processing NODE_7682_length_433_cov_18.262821:1-433 [pilon] NODE_6473_length_505_cov_30.781250:1-505 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 287, Coverage: 43, minDepth: 11 [pilon] Confirmed 395 of 505 bases (78.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6473_length_505_cov_30.781250:1-505 [pilon] Processing NODE_9946_length_327_cov_42.330097:1-327 [pilon] NODE_12518_length_243_cov_28.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12518_length_243_cov_28.811475:1-243 [pilon] Processing NODE_1979_length_1092_cov_14.506694:1-1092 [pilon] NODE_9633_length_340_cov_13.251142:1-340 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 64, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 340 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9633_length_340_cov_13.251142:1-340 [pilon] Processing NODE_4562_length_656_cov_33.414953:1-656 [pilon] NODE_1934_length_1102_cov_2.221203:1-1102 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 58, Coverage: 7, minDepth: 5 [pilon] Confirmed 518 of 1102 bases (47.01%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1934_length_1102_cov_2.221203:1-1102 [pilon] Processing NODE_12623_length_243_cov_27.262295:1-243 [pilon] NODE_7067_length_467_cov_4.823699:1-467 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 467 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7067_length_467_cov_4.823699:1-467 [pilon] Processing NODE_12782_length_243_cov_25.229508:1-243 [pilon] NODE_4130_length_701_cov_6.239655:1-701 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 127, Coverage: 11, minDepth: 5 [pilon] Confirmed 647 of 701 bases (92.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4130_length_701_cov_6.239655:1-701 [pilon] Processing NODE_7152_length_462_cov_25.079179:1-462 [pilon] NODE_7824_length_426_cov_14.403279:1-426 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 98, Coverage: 13, minDepth: 5 [pilon] Confirmed 299 of 426 bases (70.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7824_length_426_cov_14.403279:1-426 [pilon] Processing NODE_5693_length_564_cov_1.318284:1-564 [pilon] NODE_8509_length_393_cov_22.908088:1-393 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 154, Coverage: 6, minDepth: 5 [pilon] Confirmed 150 of 393 bases (38.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8509_length_393_cov_22.908088:1-393 [pilon] Processing NODE_1933_length_1102_cov_30.997961:1-1102 [pilon] NODE_11390_length_267_cov_26.458904:1-267 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 76, Coverage: 3, minDepth: 5 [pilon] Confirmed 103 of 267 bases (38.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11390_length_267_cov_26.458904:1-267 [pilon] Processing NODE_9626_length_340_cov_38.616438:1-340 [pilon] NODE_15003_length_243_cov_5.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15003_length_243_cov_5.385246:1-243 [pilon] Processing NODE_5901_length_548_cov_1.313817:1-548 [pilon] NODE_7252_length_457_cov_2.955357:1-457 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 52, Coverage: 10, minDepth: 5 [pilon] Confirmed 426 of 457 bases (93.22%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7252_length_457_cov_2.955357:1-457 [pilon] Processing NODE_7673_length_434_cov_15.092652:1-434 [pilon] NODE_12574_length_243_cov_27.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12574_length_243_cov_27.942623:1-243 [pilon] Processing NODE_12304_length_243_cov_33.114754:1-243 [pilon] NODE_536_length_1875_cov_16.790194:1-1875 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 781, Coverage: 43, minDepth: 11 [pilon] Confirmed 1621 of 1875 bases (86.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_536_length_1875_cov_16.790194:1-1875 [pilon] Processing NODE_6381_length_512_cov_1.687980:1-512 [pilon] NODE_10972_length_285_cov_18.817073:1-285 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 68, Coverage: 8, minDepth: 5 [pilon] Confirmed 175 of 285 bases (61.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10972_length_285_cov_18.817073:1-285 [pilon] Processing NODE_12926_length_243_cov_23.729508:1-243 [pilon] NODE_9447_length_348_cov_16.731278:1-348 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 87, Coverage: 2, minDepth: 5 [pilon] Confirmed 104 of 348 bases (29.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9447_length_348_cov_16.731278:1-348 [pilon] Processing NODE_12563_length_243_cov_28.106557:1-243 [pilon] NODE_3687_length_756_cov_19.233071:1-756 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 320, Coverage: 24, minDepth: 6 [pilon] Confirmed 486 of 756 bases (64.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3687_length_756_cov_19.233071:1-756 [pilon] Processing NODE_11098_length_279_cov_28.272152:1-279 [pilon] NODE_8114_length_412_cov_33.285223:1-412 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 223, Coverage: 33, minDepth: 8 [pilon] Confirmed 341 of 412 bases (82.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8114_length_412_cov_33.285223:1-412 [pilon] Processing NODE_1061_length_1460_cov_8.843167:1-1460 [pilon] NODE_359_length_2111_cov_9.506030:1-2111 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 453, Coverage: 24, minDepth: 6 [pilon] Confirmed 1900 of 2111 bases (90.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_359_length_2111_cov_9.506030:1-2111 [pilon] Processing NODE_11704_length_255_cov_32.865672:1-255 [pilon] NODE_15033_length_243_cov_5.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15033_length_243_cov_5.065574:1-243 [pilon] Processing NODE_2086_length_1062_cov_28.094580:1-1062 [pilon] NODE_7344_length_451_cov_1.633333:1-451 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 16, Coverage: 5, minDepth: 5 [pilon] Confirmed 216 of 451 bases (47.89%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7344_length_451_cov_1.633333:1-451 [pilon] Processing NODE_13078_length_243_cov_22.147541:1-243 [pilon] NODE_7682_length_433_cov_18.262821:1-433 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 127, Coverage: 12, minDepth: 5 [pilon] Confirmed 281 of 433 bases (64.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7682_length_433_cov_18.262821:1-433 [pilon] Processing NODE_2595_length_946_cov_20.019394:1-946 [pilon] NODE_12297_length_243_cov_33.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 89, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12297_length_243_cov_33.188525:1-243 [pilon] Processing NODE_8276_length_405_cov_20.334507:1-405 [pilon] NODE_14191_length_243_cov_12.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14191_length_243_cov_12.696721:1-243 [pilon] Processing NODE_8124_length_412_cov_1.381443:1-412 [pilon] NODE_11559_length_261_cov_29.785714:1-261 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 99, Coverage: 10, minDepth: 5 [pilon] Confirmed 211 of 261 bases (80.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11559_length_261_cov_29.785714:1-261 [pilon] Processing NODE_1316_length_1333_cov_25.274752:1-1333 [pilon] NODE_2454_length_977_cov_1.172897:1-977 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 41, Coverage: 5, minDepth: 5 [pilon] Confirmed 538 of 977 bases (55.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2454_length_977_cov_1.172897:1-977 [pilon] Processing NODE_4957_length_622_cov_2.471058:1-622 [pilon] NODE_6283_length_519_cov_1.115578:1-519 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 269 of 519 bases (51.83%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6283_length_519_cov_1.115578:1-519 [pilon] Processing NODE_4674_length_646_cov_2.339048:1-646 [pilon] NODE_207_length_2475_cov_2.161003:1-2475 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 157, Coverage: 8, minDepth: 5 [pilon] Confirmed 1626 of 2475 bases (65.70%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_207_length_2475_cov_2.161003:1-2475 [pilon] Processing NODE_13653_length_243_cov_16.975410:1-243 [pilon] NODE_1933_length_1102_cov_30.997961:1-1102 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 700, Coverage: 67, minDepth: 17 [pilon] Confirmed 877 of 1102 bases (79.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1933_length_1102_cov_30.997961:1-1102 [pilon] Processing NODE_10514_length_304_cov_10.967213:1-304 [pilon] NODE_9428_length_348_cov_49.030837:1-348 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 251, Coverage: 38, minDepth: 10 [pilon] Confirmed 289 of 348 bases (83.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9428_length_348_cov_49.030837:1-348 [pilon] Processing NODE_7820_length_426_cov_18.147541:1-426 [pilon] NODE_9946_length_327_cov_42.330097:1-327 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 191, Coverage: 27, minDepth: 7 [pilon] Confirmed 245 of 327 bases (74.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9946_length_327_cov_42.330097:1-327 [pilon] Processing NODE_1504_length_1257_cov_3.514965:1-1257 [pilon] NODE_1979_length_1092_cov_14.506694:1-1092 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 324, Coverage: 31, minDepth: 8 [pilon] Confirmed 927 of 1092 bases (84.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1979_length_1092_cov_14.506694:1-1092 [pilon] Processing NODE_805_length_1624_cov_5.065868:1-1624 [pilon] NODE_4562_length_656_cov_33.414953:1-656 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 407, Coverage: 56, minDepth: 14 [pilon] Confirmed 529 of 656 bases (80.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4562_length_656_cov_33.414953:1-656 [pilon] Processing NODE_7306_length_453_cov_43.701807:1-453 [pilon] NODE_12623_length_243_cov_27.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12623_length_243_cov_27.262295:1-243 [pilon] Processing NODE_4967_length_621_cov_14.808000:1-621 [pilon] NODE_2086_length_1062_cov_28.094580:1-1062 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 730, Coverage: 76, minDepth: 19 [pilon] Confirmed 930 of 1062 bases (87.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2086_length_1062_cov_28.094580:1-1062 [pilon] Processing NODE_3671_length_759_cov_16.920063:1-759 [pilon] NODE_7152_length_462_cov_25.079179:1-462 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 198, Coverage: 31, minDepth: 8 [pilon] Confirmed 350 of 462 bases (75.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7152_length_462_cov_25.079179:1-462 [pilon] Processing NODE_13901_length_243_cov_14.877049:1-243 [pilon] NODE_12304_length_243_cov_33.114754:1-243 log: [pilon] NODE_5693_length_564_cov_1.318284:1-564 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 250 of 564 bases (44.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5693_length_564_cov_1.318284:1-564 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12304_length_243_cov_33.114754:1-243 [pilon] Processing NODE_3141_length_843_cov_21.217452:1-843 [pilon] Processing NODE_11069_length_280_cov_24.389937:1-280 [pilon] NODE_12782_length_243_cov_25.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12782_length_243_cov_25.229508:1-243 [pilon] Processing NODE_15161_length_184_cov_5.666667:1-184 [pilon] NODE_5901_length_548_cov_1.313817:1-548 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 15, Coverage: 4, minDepth: 5 [pilon] Confirmed 202 of 548 bases (36.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5901_length_548_cov_1.313817:1-548 [pilon] Processing NODE_10419_length_308_cov_11.262032:1-308 [pilon] NODE_7673_length_434_cov_15.092652:1-434 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 102, Coverage: 14, minDepth: 5 [pilon] Confirmed 293 of 434 bases (67.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7673_length_434_cov_15.092652:1-434 [pilon] Processing NODE_2821_length_906_cov_14.707006:1-906 [pilon] NODE_9626_length_340_cov_38.616438:1-340 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 196, Coverage: 16, minDepth: 5 [pilon] Confirmed 231 of 340 bases (67.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9626_length_340_cov_38.616438:1-340 [pilon] Processing NODE_13611_length_243_cov_17.377049:1-243 [pilon] NODE_2595_length_946_cov_20.019394:1-946 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 388, Coverage: 35, minDepth: 9 [pilon] Confirmed 688 of 946 bases (72.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2595_length_946_cov_20.019394:1-946 [pilon] Processing NODE_4730_length_641_cov_3.821154:1-641 [pilon] NODE_6381_length_512_cov_1.687980:1-512 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 29, Coverage: 7, minDepth: 5 [pilon] Confirmed 413 of 512 bases (80.66%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6381_length_512_cov_1.687980:1-512 [pilon] NODE_12926_length_243_cov_23.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_13729_length_243_cov_16.188525:1-243 [pilon] Finished processing NODE_12926_length_243_cov_23.729508:1-243 [pilon] Processing NODE_5625_length_569_cov_1.511161:1-569 [pilon] NODE_12563_length_243_cov_28.106557:1-243 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 67, Coverage: 4, minDepth: 5 [pilon] Confirmed 128 of 243 bases (52.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12563_length_243_cov_28.106557:1-243 [pilon] Processing NODE_7037_length_469_cov_0.899425:1-469 [pilon] NODE_11098_length_279_cov_28.272152:1-279 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 101, Coverage: 7, minDepth: 5 [pilon] Confirmed 160 of 279 bases (57.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11098_length_279_cov_28.272152:1-279 [pilon] Processing NODE_11218_length_275_cov_24.610390:1-275 [pilon] NODE_11704_length_255_cov_32.865672:1-255 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 80, Coverage: 9, minDepth: 5 [pilon] Confirmed 202 of 255 bases (79.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11704_length_255_cov_32.865672:1-255 [pilon] Processing NODE_1712_length_1177_cov_18.762311:1-1177 [pilon] NODE_1061_length_1460_cov_8.843167:1-1460 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 329, Coverage: 22, minDepth: 6 [pilon] Confirmed 939 of 1460 bases (64.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1061_length_1460_cov_8.843167:1-1460 [pilon] Processing NODE_10643_length_300_cov_12.871508:1-300 [pilon] NODE_13078_length_243_cov_22.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13078_length_243_cov_22.147541:1-243 [pilon] Processing NODE_4720_length_641_cov_38.919231:1-641 [pilon] NODE_10514_length_304_cov_10.967213:1-304 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 41, Coverage: 5, minDepth: 5 [pilon] Confirmed 143 of 304 bases (47.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10514_length_304_cov_10.967213:1-304 [pilon] Processing NODE_7658_length_435_cov_8.633758:1-435 [pilon] NODE_8276_length_405_cov_20.334507:1-405 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 125, Coverage: 13, minDepth: 5 [pilon] Confirmed 217 of 405 bases (53.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8276_length_405_cov_20.334507:1-405 [pilon] Processing NODE_1594_length_1221_cov_1.601818:1-1221 [pilon] NODE_4957_length_622_cov_2.471058:1-622 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 25, Coverage: 5, minDepth: 5 [pilon] Confirmed 329 of 622 bases (52.89%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4957_length_622_cov_2.471058:1-622 [pilon] Processing NODE_1711_length_1177_cov_22.296402:1-1177 [pilon] NODE_8124_length_412_cov_1.381443:1-412 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 123 of 412 bases (29.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8124_length_412_cov_1.381443:1-412 [pilon] Processing NODE_4622_length_650_cov_25.081285:1-650 [pilon] NODE_4674_length_646_cov_2.339048:1-646 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 378 of 646 bases (58.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4674_length_646_cov_2.339048:1-646 [pilon] Processing NODE_13253_length_243_cov_20.622951:1-243 [pilon] NODE_3671_length_759_cov_16.920063:1-759 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 295, Coverage: 29, minDepth: 7 [pilon] Confirmed 734 of 759 bases (96.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3671_length_759_cov_16.920063:1-759 [pilon] Processing NODE_5847_length_552_cov_2.452436:1-552 [pilon] NODE_1316_length_1333_cov_25.274752:1-1333 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 734, Coverage: 39, minDepth: 10 [pilon] Confirmed 1058 of 1333 bases (79.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1316_length_1333_cov_25.274752:1-1333 [pilon] Processing NODE_2018_length_1082_cov_19.497399:1-1082 [pilon] NODE_13653_length_243_cov_16.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13653_length_243_cov_16.975410:1-243 [pilon] Processing NODE_8005_length_418_cov_2.306397:1-418 [pilon] NODE_4730_length_641_cov_3.821154:1-641 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 450 of 641 bases (70.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4730_length_641_cov_3.821154:1-641 [pilon] Processing NODE_508_length_1908_cov_3.453833:1-1908 [pilon] NODE_805_length_1624_cov_5.065868:1-1624 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 209, Coverage: 14, minDepth: 5 [pilon] Confirmed 1255 of 1624 bases (77.28%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_805_length_1624_cov_5.065868:1-1624 [pilon] Processing NODE_6037_length_537_cov_23.855769:1-537 [pilon] NODE_7820_length_426_cov_18.147541:1-426 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 150, Coverage: 15, minDepth: 5 [pilon] Confirmed 314 of 426 bases (73.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7820_length_426_cov_18.147541:1-426 [pilon] Processing NODE_11299_length_272_cov_22.847682:1-272 [pilon] NODE_1504_length_1257_cov_3.514965:1-1257 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 105, Coverage: 11, minDepth: 5 [pilon] Confirmed 957 of 1257 bases (76.13%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1504_length_1257_cov_3.514965:1-1257 [pilon] Processing NODE_7802_length_427_cov_20.588235:1-427 [pilon] NODE_7306_length_453_cov_43.701807:1-453 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 326, Coverage: 56, minDepth: 14 [pilon] Confirmed 362 of 453 bases (79.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7306_length_453_cov_43.701807:1-453 [pilon] Processing NODE_2691_length_931_cov_1.280247:1-931 [pilon] NODE_15161_length_184_cov_5.666667:1-184 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 184 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15161_length_184_cov_5.666667:1-184 [pilon] Processing NODE_14734_length_243_cov_8.270492:1-243 [pilon] NODE_4967_length_621_cov_14.808000:1-621 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 196, Coverage: 23, minDepth: 6 [pilon] Confirmed 418 of 621 bases (67.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4967_length_621_cov_14.808000:1-621 [pilon] Processing NODE_13169_length_243_cov_21.368852:1-243 [pilon] NODE_11069_length_280_cov_24.389937:1-280 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 79, Coverage: 17, minDepth: 5 [pilon] Confirmed 231 of 280 bases (82.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11069_length_280_cov_24.389937:1-280 [pilon] Processing NODE_12801_length_243_cov_25.024590:1-243 [pilon] NODE_13901_length_243_cov_14.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13901_length_243_cov_14.877049:1-243 [pilon] Processing NODE_12957_length_243_cov_23.377049:1-243 [pilon] NODE_13611_length_243_cov_17.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13611_length_243_cov_17.377049:1-243 [pilon] Processing NODE_4063_length_709_cov_5.608844:1-709 [pilon] NODE_10419_length_308_cov_11.262032:1-308 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 78, Coverage: 8, minDepth: 5 [pilon] Confirmed 283 of 308 bases (91.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10419_length_308_cov_11.262032:1-308 [pilon] Processing NODE_1984_length_1091_cov_3.087629:1-1091 [pilon] NODE_2821_length_906_cov_14.707006:1-906 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 269, Coverage: 20, minDepth: 5 [pilon] Confirmed 703 of 906 bases (77.59%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2821_length_906_cov_14.707006:1-906 [pilon] Processing NODE_3473_length_788_cov_45.283358:1-788 [pilon] NODE_7037_length_469_cov_0.899425:1-469 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 106 of 469 bases (22.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7037_length_469_cov_0.899425:1-469 [pilon] Processing NODE_3114_length_849_cov_9.972527:1-849 [pilon] NODE_7658_length_435_cov_8.633758:1-435 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 65, Coverage: 7, minDepth: 5 [pilon] Confirmed 286 of 435 bases (65.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7658_length_435_cov_8.633758:1-435 [pilon] Processing NODE_7186_length_460_cov_33.572271:1-460 [pilon] NODE_5625_length_569_cov_1.511161:1-569 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 284 of 569 bases (49.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5625_length_569_cov_1.511161:1-569 [pilon] Processing NODE_5321_length_591_cov_3.148936:1-591 [pilon] NODE_3141_length_843_cov_21.217452:1-843 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 337, Coverage: 39, minDepth: 10 [pilon] Confirmed 529 of 843 bases (62.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3141_length_843_cov_21.217452:1-843 [pilon] Processing NODE_8612_length_387_cov_26.511278:1-387 [pilon] NODE_13729_length_243_cov_16.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13729_length_243_cov_16.188525:1-243 [pilon] Processing NODE_5530_length_575_cov_15.085903:1-575 [pilon] NODE_10643_length_300_cov_12.871508:1-300 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 48, Coverage: 2, minDepth: 5 [pilon] Confirmed 101 of 300 bases (33.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10643_length_300_cov_12.871508:1-300 [pilon] Processing NODE_11314_length_270_cov_34.912752:1-270 [pilon] NODE_1712_length_1177_cov_18.762311:1-1177 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 473, Coverage: 37, minDepth: 9 [pilon] Confirmed 805 of 1177 bases (68.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1712_length_1177_cov_18.762311:1-1177 [pilon] Processing NODE_3822_length_738_cov_17.132901:1-738 [pilon] NODE_11218_length_275_cov_24.610390:1-275 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 83, Coverage: 9, minDepth: 5 [pilon] Confirmed 203 of 275 bases (73.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11218_length_275_cov_24.610390:1-275 [pilon] Processing NODE_4218_length_692_cov_2.078809:1-692 [pilon] NODE_4720_length_641_cov_38.919231:1-641 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 493, Coverage: 58, minDepth: 15 [pilon] Confirmed 490 of 641 bases (76.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4720_length_641_cov_38.919231:1-641 [pilon] Processing NODE_10884_length_288_cov_32.269461:1-288 [pilon] NODE_5847_length_552_cov_2.452436:1-552 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 43, Coverage: 9, minDepth: 5 [pilon] Confirmed 486 of 552 bases (88.04%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5847_length_552_cov_2.452436:1-552 [pilon] Processing NODE_8209_length_408_cov_9.557491:1-408 [pilon] NODE_508_length_1908_cov_3.453833:1-1908 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 164, Coverage: 11, minDepth: 5 [pilon] Confirmed 1517 of 1908 bases (79.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_508_length_1908_cov_3.453833:1-1908 [pilon] Processing NODE_1114_length_1435_cov_18.167428:1-1435 [pilon] NODE_1594_length_1221_cov_1.601818:1-1221 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 66, Coverage: 7, minDepth: 5 [pilon] Confirmed 615 of 1221 bases (50.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1594_length_1221_cov_1.601818:1-1221 [pilon] Processing NODE_15158_length_185_cov_6.171875:1-185 [pilon] NODE_13253_length_243_cov_20.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13253_length_243_cov_20.622951:1-243 [pilon] Processing NODE_10504_length_304_cov_22.169399:1-304 [pilon] NODE_1711_length_1177_cov_22.296402:1-1177 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 601, Coverage: 54, minDepth: 14 [pilon] Confirmed 1038 of 1177 bases (88.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1711_length_1177_cov_22.296402:1-1177 [pilon] Processing NODE_1973_length_1093_cov_19.209877:1-1093 [pilon] NODE_6037_length_537_cov_23.855769:1-537 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 243, Coverage: 31, minDepth: 8 [pilon] Confirmed 405 of 537 bases (75.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6037_length_537_cov_23.855769:1-537 [pilon] Processing NODE_8521_length_393_cov_12.544118:1-393 [pilon] NODE_4622_length_650_cov_25.081285:1-650 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 314, Coverage: 44, minDepth: 11 [pilon] Confirmed 583 of 650 bases (89.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4622_length_650_cov_25.081285:1-650 [pilon] Processing NODE_4049_length_710_cov_30.086587:1-710 [pilon] NODE_2018_length_1082_cov_19.497399:1-1082 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 432, Coverage: 42, minDepth: 11 [pilon] Confirmed 774 of 1082 bases (71.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2018_length_1082_cov_19.497399:1-1082 [pilon] Processing NODE_13620_length_243_cov_17.311475:1-243 [pilon] NODE_8005_length_418_cov_2.306397:1-418 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 210 of 418 bases (50.24%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8005_length_418_cov_2.306397:1-418 [pilon] Processing NODE_10455_length_306_cov_16.783784:1-306 [pilon] NODE_7186_length_460_cov_33.572271:1-460 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 235, Coverage: 36, minDepth: 9 [pilon] Confirmed 395 of 460 bases (85.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7186_length_460_cov_33.572271:1-460 [pilon] Processing NODE_5616_length_569_cov_20.102679:1-569 [pilon] NODE_11299_length_272_cov_22.847682:1-272 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 73, Coverage: 5, minDepth: 5 [pilon] Confirmed 137 of 272 bases (50.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11299_length_272_cov_22.847682:1-272 [pilon] Processing NODE_11330_length_270_cov_20.805369:1-270 [pilon] NODE_7802_length_427_cov_20.588235:1-427 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 148, Coverage: 16, minDepth: 5 [pilon] Confirmed 271 of 427 bases (63.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7802_length_427_cov_20.588235:1-427 [pilon] Processing NODE_12370_length_243_cov_31.696721:1-243 [pilon] NODE_2691_length_931_cov_1.280247:1-931 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 394 of 931 bases (42.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2691_length_931_cov_1.280247:1-931 [pilon] Processing NODE_7129_length_464_cov_13.399417:1-464 [pilon] NODE_14734_length_243_cov_8.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14734_length_243_cov_8.270492:1-243 [pilon] NODE_12957_length_243_cov_23.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_2520_length_963_cov_14.900238:1-963 [pilon] Finished processing NODE_12957_length_243_cov_23.377049:1-243 [pilon] Processing NODE_12693_length_243_cov_26.327869:1-243 [pilon] NODE_13169_length_243_cov_21.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13169_length_243_cov_21.368852:1-243 [pilon] Processing NODE_7055_length_468_cov_0.916427:1-468 [pilon] NODE_4063_length_709_cov_5.608844:1-709 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 75, Coverage: 14, minDepth: 5 [pilon] Confirmed 530 of 709 bases (74.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4063_length_709_cov_5.608844:1-709 [pilon] Processing NODE_10747_length_296_cov_7.051429:1-296 [pilon] NODE_8209_length_408_cov_9.557491:1-408 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 214 of 408 bases (52.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8209_length_408_cov_9.557491:1-408 [pilon] Processing NODE_6547_length_500_cov_53.567282:1-500 [pilon] NODE_12801_length_243_cov_25.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12801_length_243_cov_25.024590:1-243 [pilon] Processing NODE_7696_length_432_cov_31.845659:1-432 [pilon] NODE_3114_length_849_cov_9.972527:1-849 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 161, Coverage: 24, minDepth: 6 [pilon] Confirmed 561 of 849 bases (66.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3114_length_849_cov_9.972527:1-849 [pilon] Processing NODE_4433_length_668_cov_1.043876:1-668 [pilon] NODE_5321_length_591_cov_3.148936:1-591 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 49, Coverage: 11, minDepth: 5 [pilon] Confirmed 444 of 591 bases (75.13%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5321_length_591_cov_3.148936:1-591 [pilon] Processing NODE_1198_length_1399_cov_1.621283:1-1399 [pilon] NODE_1984_length_1091_cov_3.087629:1-1091 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 81, Coverage: 9, minDepth: 5 [pilon] Confirmed 811 of 1091 bases (74.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1984_length_1091_cov_3.087629:1-1091 [pilon] Processing NODE_1853_length_1128_cov_1.638530:1-1128 [pilon] NODE_8612_length_387_cov_26.511278:1-387 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 154, Coverage: 20, minDepth: 5 [pilon] Confirmed 299 of 387 bases (77.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8612_length_387_cov_26.511278:1-387 [pilon] Processing NODE_13088_length_243_cov_22.057377:1-243 [pilon] NODE_1114_length_1435_cov_18.167428:1-1435 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 597, Coverage: 37, minDepth: 9 [pilon] Confirmed 1220 of 1435 bases (85.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1114_length_1435_cov_18.167428:1-1435 [pilon] Processing NODE_12293_length_243_cov_33.352459:1-243 [pilon] NODE_3473_length_788_cov_45.283358:1-788 log: [pilon] frags shovill.bam: coverage 99 [pilon] Total Reads: 683, Coverage: 99, minDepth: 25 [pilon] Confirmed 612 of 788 bases (77.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3473_length_788_cov_45.283358:1-788 [pilon] Processing NODE_1767_length_1156_cov_13.199034:1-1156 [pilon] NODE_11314_length_270_cov_34.912752:1-270 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 110, Coverage: 6, minDepth: 5 [pilon] Confirmed 195 of 270 bases (72.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11314_length_270_cov_34.912752:1-270 [pilon] Processing NODE_2163_length_1042_cov_14.889251:1-1042 [pilon] NODE_5530_length_575_cov_15.085903:1-575 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 156, Coverage: 26, minDepth: 7 [pilon] Confirmed 374 of 575 bases (65.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5530_length_575_cov_15.085903:1-575 [pilon] Processing NODE_9516_length_345_cov_19.950893:1-345 [pilon] NODE_4218_length_692_cov_2.078809:1-692 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 36, Coverage: 6, minDepth: 5 [pilon] Confirmed 333 of 692 bases (48.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4218_length_692_cov_2.078809:1-692 [pilon] Processing NODE_7325_length_452_cov_13.664653:1-452 [pilon] NODE_3822_length_738_cov_17.132901:1-738 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 191, Coverage: 21, minDepth: 5 [pilon] Confirmed 599 of 738 bases (81.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3822_length_738_cov_17.132901:1-738 [pilon] Processing NODE_7398_length_448_cov_14.314985:1-448 [pilon] NODE_10884_length_288_cov_32.269461:1-288 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 123, Coverage: 17, minDepth: 5 [pilon] Confirmed 247 of 288 bases (85.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10884_length_288_cov_32.269461:1-288 [pilon] Processing NODE_10012_length_324_cov_29.635468:1-324 [pilon] NODE_15158_length_185_cov_6.171875:1-185 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 185 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15158_length_185_cov_6.171875:1-185 [pilon] Processing NODE_13965_length_243_cov_14.377049:1-243 [pilon] NODE_8521_length_393_cov_12.544118:1-393 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 86, Coverage: 16, minDepth: 5 [pilon] Confirmed 317 of 393 bases (80.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8521_length_393_cov_12.544118:1-393 [pilon] Processing NODE_8909_length_371_cov_17.260000:1-371 [pilon] NODE_5616_length_569_cov_20.102679:1-569 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 228, Coverage: 25, minDepth: 6 [pilon] Confirmed 513 of 569 bases (90.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5616_length_569_cov_20.102679:1-569 [pilon] Processing NODE_3825_length_738_cov_6.773096:1-738 [pilon] NODE_10504_length_304_cov_22.169399:1-304 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 98, Coverage: 5, minDepth: 5 [pilon] Confirmed 136 of 304 bases (44.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10504_length_304_cov_22.169399:1-304 [pilon] Processing NODE_11059_length_281_cov_8.512500:1-281 [pilon] NODE_13620_length_243_cov_17.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13620_length_243_cov_17.311475:1-243 [pilon] Processing NODE_10187_length_318_cov_12.329949:1-318 [pilon] NODE_1973_length_1093_cov_19.209877:1-1093 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 455, Coverage: 33, minDepth: 8 [pilon] Confirmed 887 of 1093 bases (81.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1973_length_1093_cov_19.209877:1-1093 [pilon] Processing NODE_5165_length_604_cov_51.341615:1-604 [pilon] NODE_10455_length_306_cov_16.783784:1-306 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 73, Coverage: 2, minDepth: 5 [pilon] Confirmed 85 of 306 bases (27.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10455_length_306_cov_16.783784:1-306 [pilon] Processing NODE_11172_length_276_cov_29.845161:1-276 [pilon] NODE_4049_length_710_cov_30.086587:1-710 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 410, Coverage: 59, minDepth: 15 [pilon] Confirmed 648 of 710 bases (91.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4049_length_710_cov_30.086587:1-710 [pilon] Processing NODE_7092_length_465_cov_22.543605:1-465 [pilon] NODE_7696_length_432_cov_31.845659:1-432 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 224, Coverage: 31, minDepth: 8 [pilon] Confirmed 317 of 432 bases (73.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7696_length_432_cov_31.845659:1-432 [pilon] Processing NODE_13826_length_243_cov_15.434426:1-243 [pilon] NODE_12370_length_243_cov_31.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 86, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12370_length_243_cov_31.696721:1-243 [pilon] Processing NODE_8316_length_404_cov_0.681979:1-404 [pilon] NODE_11330_length_270_cov_20.805369:1-270 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 72, Coverage: 5, minDepth: 5 [pilon] Confirmed 155 of 270 bases (57.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11330_length_270_cov_20.805369:1-270 [pilon] Processing NODE_1837_length_1133_cov_2.783597:1-1133 [pilon] NODE_12693_length_243_cov_26.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12693_length_243_cov_26.327869:1-243 [pilon] Processing NODE_11582_length_261_cov_16.121429:1-261 [pilon] NODE_7129_length_464_cov_13.399417:1-464 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 94, Coverage: 13, minDepth: 5 [pilon] Confirmed 255 of 464 bases (54.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7129_length_464_cov_13.399417:1-464 [pilon] Processing NODE_13959_length_243_cov_14.450820:1-243 [pilon] NODE_4433_length_668_cov_1.043876:1-668 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 348 of 668 bases (52.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4433_length_668_cov_1.043876:1-668 [pilon] Processing NODE_9027_length_365_cov_23.762295:1-365 [pilon] NODE_2520_length_963_cov_14.900238:1-963 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 309, Coverage: 31, minDepth: 8 [pilon] Confirmed 741 of 963 bases (76.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2520_length_963_cov_14.900238:1-963 [pilon] Processing NODE_8370_length_402_cov_1.654804:1-402 [pilon] NODE_6547_length_500_cov_53.567282:1-500 log: [pilon] frags shovill.bam: coverage 82 [pilon] Total Reads: 462, Coverage: 82, minDepth: 21 [pilon] Confirmed 428 of 500 bases (85.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6547_length_500_cov_53.567282:1-500 [pilon] Processing NODE_13942_length_243_cov_14.565574:1-243 [pilon] NODE_10747_length_296_cov_7.051429:1-296 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 296 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10747_length_296_cov_7.051429:1-296 [pilon] Processing NODE_6524_length_502_cov_1.346457:1-502 [pilon] NODE_12293_length_243_cov_33.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12293_length_243_cov_33.352459:1-243 [pilon] Processing NODE_11781_length_254_cov_7.609023:1-254 [pilon] NODE_7055_length_468_cov_0.916427:1-468 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 83 of 468 bases (17.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7055_length_468_cov_0.916427:1-468 [pilon] Processing NODE_14475_length_243_cov_10.467213:1-243 [pilon] NODE_1198_length_1399_cov_1.621283:1-1399 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 64, Coverage: 5, minDepth: 5 [pilon] Confirmed 690 of 1399 bases (49.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1198_length_1399_cov_1.621283:1-1399 [pilon] Processing NODE_11996_length_246_cov_19.840000:1-246 [pilon] NODE_2163_length_1042_cov_14.889251:1-1042 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 320, Coverage: 40, minDepth: 10 [pilon] Confirmed 699 of 1042 bases (67.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2163_length_1042_cov_14.889251:1-1042 [pilon] Processing NODE_7438_length_446_cov_38.030769:1-446 [pilon] NODE_13088_length_243_cov_22.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13088_length_243_cov_22.057377:1-243 [pilon] Processing NODE_14029_length_243_cov_13.983607:1-243 [pilon] NODE_1767_length_1156_cov_13.199034:1-1156 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 318, Coverage: 25, minDepth: 6 [pilon] Confirmed 963 of 1156 bases (83.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1767_length_1156_cov_13.199034:1-1156 [pilon] Processing NODE_9763_length_336_cov_11.632558:1-336 [pilon] NODE_1853_length_1128_cov_1.638530:1-1128 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 752 of 1128 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1853_length_1128_cov_1.638530:1-1128 [pilon] Processing NODE_14570_length_243_cov_9.737705:1-243 [pilon] NODE_9516_length_345_cov_19.950893:1-345 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 122, Coverage: 13, minDepth: 5 [pilon] Confirmed 237 of 345 bases (68.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9516_length_345_cov_19.950893:1-345 [pilon] NODE_7325_length_452_cov_13.664653:1-452 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 99, Coverage: 11, minDepth: 5 [pilon] Confirmed 250 of 452 bases (55.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7325_length_452_cov_13.664653:1-452 [pilon] Processing NODE_1548_length_1241_cov_10.137500:1-1241 [pilon] Processing NODE_9761_length_336_cov_13.386047:1-336 [pilon] NODE_10012_length_324_cov_29.635468:1-324 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 113, Coverage: 6, minDepth: 5 [pilon] Confirmed 142 of 324 bases (43.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10012_length_324_cov_29.635468:1-324 [pilon] Processing NODE_3153_length_842_cov_1.969487:1-842 [pilon] NODE_8909_length_371_cov_17.260000:1-371 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 90, Coverage: 11, minDepth: 5 [pilon] Confirmed 275 of 371 bases (74.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8909_length_371_cov_17.260000:1-371 [pilon] Processing NODE_9904_length_330_cov_13.277512:1-330 [pilon] NODE_7398_length_448_cov_14.314985:1-448 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 101, Coverage: 12, minDepth: 5 [pilon] Confirmed 298 of 448 bases (66.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7398_length_448_cov_14.314985:1-448 [pilon] Processing NODE_1914_length_1109_cov_1.943320:1-1109 [pilon] NODE_11059_length_281_cov_8.512500:1-281 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 35, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 281 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11059_length_281_cov_8.512500:1-281 [pilon] Processing NODE_7101_length_465_cov_12.453488:1-465 [pilon] NODE_13965_length_243_cov_14.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13965_length_243_cov_14.377049:1-243 [pilon] Processing NODE_4_length_7509_cov_17.981998:1-7509 [pilon] NODE_13826_length_243_cov_15.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13826_length_243_cov_15.434426:1-243 [pilon] Processing NODE_13957_length_243_cov_14.459016:1-243 [pilon] NODE_3825_length_738_cov_6.773096:1-738 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 115, Coverage: 4, minDepth: 5 [pilon] Confirmed 285 of 738 bases (38.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3825_length_738_cov_6.773096:1-738 [pilon] Processing NODE_3559_length_776_cov_26.038168:1-776 [pilon] NODE_5165_length_604_cov_51.341615:1-604 log: [pilon] frags shovill.bam: coverage 82 [pilon] Total Reads: 557, Coverage: 82, minDepth: 21 [pilon] Confirmed 516 of 604 bases (85.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5165_length_604_cov_51.341615:1-604 [pilon] Processing NODE_11723_length_255_cov_24.432836:1-255 [pilon] NODE_10187_length_318_cov_12.329949:1-318 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 62, Coverage: 7, minDepth: 5 [pilon] Confirmed 223 of 318 bases (70.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10187_length_318_cov_12.329949:1-318 [pilon] Processing NODE_6776_length_485_cov_0.846154:1-485 [pilon] NODE_8370_length_402_cov_1.654804:1-402 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 125 of 402 bases (31.09%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8370_length_402_cov_1.654804:1-402 [pilon] Processing NODE_14233_length_243_cov_12.344262:1-243 [pilon] NODE_11172_length_276_cov_29.845161:1-276 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 108, Coverage: 8, minDepth: 5 [pilon] Confirmed 173 of 276 bases (62.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11172_length_276_cov_29.845161:1-276 [pilon] Processing NODE_13990_length_243_cov_14.237705:1-243 [pilon] NODE_7092_length_465_cov_22.543605:1-465 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 172, Coverage: 34, minDepth: 9 [pilon] Confirmed 364 of 465 bases (78.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7092_length_465_cov_22.543605:1-465 [pilon] Processing NODE_9130_length_360_cov_18.589958:1-360 [pilon] NODE_8316_length_404_cov_0.681979:1-404 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 404 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8316_length_404_cov_0.681979:1-404 [pilon] Processing NODE_3853_length_734_cov_2.450245:1-734 [pilon] NODE_11582_length_261_cov_16.121429:1-261 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 50, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11582_length_261_cov_16.121429:1-261 [pilon] Processing NODE_11865_length_250_cov_25.689922:1-250 [pilon] NODE_9904_length_330_cov_13.277512:1-330 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 69, Coverage: 5, minDepth: 5 [pilon] Confirmed 143 of 330 bases (43.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9904_length_330_cov_13.277512:1-330 [pilon] Processing NODE_15094_length_224_cov_26.980583:1-224 [pilon] NODE_11781_length_254_cov_7.609023:1-254 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 26, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 254 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11781_length_254_cov_7.609023:1-254 [pilon] Processing NODE_4161_length_697_cov_27.718750:1-697 [pilon] NODE_13959_length_243_cov_14.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13959_length_243_cov_14.450820:1-243 [pilon] Processing NODE_11014_length_283_cov_22.567901:1-283 [pilon] NODE_9027_length_365_cov_23.762295:1-365 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 130, Coverage: 21, minDepth: 5 [pilon] Confirmed 306 of 365 bases (83.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9027_length_365_cov_23.762295:1-365 [pilon] Processing NODE_7445_length_446_cov_16.200000:1-446 [pilon] NODE_1837_length_1133_cov_2.783597:1-1133 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 81, Coverage: 9, minDepth: 5 [pilon] Confirmed 812 of 1133 bases (71.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1837_length_1133_cov_2.783597:1-1133 [pilon] Processing NODE_9069_length_363_cov_17.173554:1-363 [pilon] NODE_13942_length_243_cov_14.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13942_length_243_cov_14.565574:1-243 [pilon] Processing NODE_11245_length_273_cov_29.572368:1-273 [pilon] NODE_6524_length_502_cov_1.346457:1-502 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 300 of 502 bases (59.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6524_length_502_cov_1.346457:1-502 [pilon] Processing NODE_5894_length_548_cov_15.587822:1-548 [pilon] NODE_14475_length_243_cov_10.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14475_length_243_cov_10.467213:1-243 [pilon] Processing NODE_3950_length_721_cov_1.876667:1-721 [pilon] NODE_7101_length_465_cov_12.453488:1-465 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 93, Coverage: 13, minDepth: 5 [pilon] Confirmed 300 of 465 bases (64.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7101_length_465_cov_12.453488:1-465 [pilon] Processing NODE_10938_length_286_cov_21.042424:1-286 [pilon] NODE_11996_length_246_cov_19.840000:1-246 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 56, Coverage: 6, minDepth: 5 [pilon] Confirmed 176 of 246 bases (71.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11996_length_246_cov_19.840000:1-246 [pilon] Processing NODE_4252_length_687_cov_31.715548:1-687 [pilon] NODE_14029_length_243_cov_13.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14029_length_243_cov_13.983607:1-243 [pilon] Processing NODE_14053_length_243_cov_13.811475:1-243 [pilon] NODE_9763_length_336_cov_11.632558:1-336 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 59, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 336 bases (44.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9763_length_336_cov_11.632558:1-336 [pilon] Processing NODE_11864_length_250_cov_28.821705:1-250 [pilon] NODE_7438_length_446_cov_38.030769:1-446 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 297, Coverage: 44, minDepth: 11 [pilon] Confirmed 359 of 446 bases (80.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7438_length_446_cov_38.030769:1-446 [pilon] Processing NODE_3023_length_869_cov_3.639037:1-869 [pilon] NODE_3153_length_842_cov_1.969487:1-842 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 38, Coverage: 6, minDepth: 5 [pilon] Confirmed 376 of 842 bases (44.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3153_length_842_cov_1.969487:1-842 [pilon] Processing NODE_1045_length_1471_cov_2.241481:1-1471 [pilon] NODE_14570_length_243_cov_9.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14570_length_243_cov_9.737705:1-243 [pilon] Processing NODE_11375_length_268_cov_17.544218:1-268 [pilon] NODE_9761_length_336_cov_13.386047:1-336 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 69, Coverage: 4, minDepth: 5 [pilon] Confirmed 135 of 336 bases (40.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9761_length_336_cov_13.386047:1-336 [pilon] Processing NODE_14612_length_243_cov_9.303279:1-243 [pilon] NODE_1548_length_1241_cov_10.137500:1-1241 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 327, Coverage: 25, minDepth: 6 [pilon] Confirmed 932 of 1241 bases (75.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1548_length_1241_cov_10.137500:1-1241 [pilon] Processing NODE_7735_length_430_cov_48.236246:1-430 [pilon] NODE_1914_length_1109_cov_1.943320:1-1109 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 59, Coverage: 7, minDepth: 5 [pilon] Confirmed 659 of 1109 bases (59.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1914_length_1109_cov_1.943320:1-1109 [pilon] Processing NODE_7302_length_454_cov_2.702703:1-454 [pilon] NODE_13957_length_243_cov_14.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13957_length_243_cov_14.459016:1-243 [pilon] Processing NODE_2839_length_904_cov_1.298851:1-904 [pilon] NODE_14233_length_243_cov_12.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14233_length_243_cov_12.344262:1-243 [pilon] Processing NODE_863_length_1586_cov_21.606826:1-1586 [pilon] NODE_15094_length_224_cov_26.980583:1-224 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 224 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15094_length_224_cov_26.980583:1-224 [pilon] Processing NODE_2432_length_982_cov_19.354239:1-982 [pilon] NODE_11723_length_255_cov_24.432836:1-255 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 72, Coverage: 7, minDepth: 5 [pilon] Confirmed 177 of 255 bases (69.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11723_length_255_cov_24.432836:1-255 [pilon] Processing NODE_14567_length_243_cov_9.770492:1-243 [pilon] NODE_6776_length_485_cov_0.846154:1-485 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 107 of 485 bases (22.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6776_length_485_cov_0.846154:1-485 [pilon] Processing NODE_2805_length_908_cov_28.241423:1-908 [pilon] NODE_3559_length_776_cov_26.038168:1-776 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 400, Coverage: 45, minDepth: 11 [pilon] Confirmed 590 of 776 bases (76.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3559_length_776_cov_26.038168:1-776 [pilon] Processing NODE_12063_length_245_cov_20.338710:1-245 [pilon] NODE_10938_length_286_cov_21.042424:1-286 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 69, Coverage: 3, minDepth: 5 [pilon] Confirmed 116 of 286 bases (40.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10938_length_286_cov_21.042424:1-286 [pilon] Processing NODE_11709_length_255_cov_30.477612:1-255 [pilon] NODE_13990_length_243_cov_14.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13990_length_243_cov_14.237705:1-243 [pilon] Processing NODE_2352_length_1000_cov_18.953356:1-1000 [pilon] NODE_3853_length_734_cov_2.450245:1-734 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 37, Coverage: 7, minDepth: 5 [pilon] Confirmed 386 of 734 bases (52.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3853_length_734_cov_2.450245:1-734 [pilon] Processing NODE_11615_length_259_cov_9.500000:1-259 [pilon] NODE_11865_length_250_cov_25.689922:1-250 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 78, Coverage: 3, minDepth: 5 [pilon] Confirmed 81 of 250 bases (32.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11865_length_250_cov_25.689922:1-250 [pilon] Processing NODE_5431_length_582_cov_11.327549:1-582 [pilon] NODE_4_length_7509_cov_17.981998:1-7509 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 2938, Coverage: 46, minDepth: 12 [pilon] Confirmed 6096 of 7509 bases (81.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4_length_7509_cov_17.981998:1-7509 [pilon] Processing NODE_4954_length_622_cov_4.790419:1-622 [pilon] NODE_9130_length_360_cov_18.589958:1-360 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 87, Coverage: 10, minDepth: 5 [pilon] Confirmed 194 of 360 bases (53.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_11014_length_283_cov_22.567901:1-283 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 76, Coverage: 13, minDepth: 5 [pilon] Confirmed 226 of 283 bases (79.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_9069_length_363_cov_17.173554:1-363 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 88, Coverage: 4, minDepth: 5 [pilon] Confirmed 133 of 363 bases (36.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9069_length_363_cov_17.173554:1-363 [pilon] Finished processing NODE_11014_length_283_cov_22.567901:1-283 [pilon] Processing NODE_12387_length_243_cov_31.319672:1-243 [pilon] Finished processing NODE_9130_length_360_cov_18.589958:1-360 [pilon] Processing NODE_115_length_2905_cov_19.911279:1-2905 [pilon] Processing NODE_4349_length_676_cov_4.518919:1-676 [pilon] NODE_4161_length_697_cov_27.718750:1-697 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 382, Coverage: 50, minDepth: 13 [pilon] Confirmed 472 of 697 bases (67.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4161_length_697_cov_27.718750:1-697 [pilon] Processing NODE_954_length_1526_cov_8.772242:1-1526 [pilon] NODE_7445_length_446_cov_16.200000:1-446 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 136, Coverage: 17, minDepth: 5 [pilon] Confirmed 416 of 446 bases (93.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7445_length_446_cov_16.200000:1-446 [pilon] Processing NODE_12358_length_243_cov_31.893443:1-243 [pilon] NODE_11245_length_273_cov_29.572368:1-273 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 104, Coverage: 18, minDepth: 5 [pilon] Confirmed 225 of 273 bases (82.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11245_length_273_cov_29.572368:1-273 [pilon] Processing NODE_14541_length_243_cov_9.975410:1-243 [pilon] NODE_5894_length_548_cov_15.587822:1-548 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 173, Coverage: 23, minDepth: 6 [pilon] Confirmed 439 of 548 bases (80.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5894_length_548_cov_15.587822:1-548 [pilon] Processing NODE_15104_length_220_cov_3.848485:1-220 [pilon] NODE_3950_length_721_cov_1.876667:1-721 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 53, Coverage: 8, minDepth: 5 [pilon] Confirmed 621 of 721 bases (86.13%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3950_length_721_cov_1.876667:1-721 [pilon] Processing NODE_3495_length_784_cov_28.764706:1-784 [pilon] NODE_3023_length_869_cov_3.639037:1-869 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 68, Coverage: 10, minDepth: 5 [pilon] Confirmed 563 of 869 bases (64.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3023_length_869_cov_3.639037:1-869 [pilon] Processing NODE_13426_length_243_cov_19.049180:1-243 [pilon] NODE_4252_length_687_cov_31.715548:1-687 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 409, Coverage: 51, minDepth: 13 [pilon] Confirmed 578 of 687 bases (84.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4252_length_687_cov_31.715548:1-687 [pilon] Processing NODE_12491_length_243_cov_29.262295:1-243 [pilon] NODE_863_length_1586_cov_21.606826:1-1586 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 739, Coverage: 54, minDepth: 14 [pilon] Confirmed 1305 of 1586 bases (82.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_863_length_1586_cov_21.606826:1-1586 [pilon] Processing NODE_11814_length_252_cov_21.381679:1-252 [pilon] NODE_11864_length_250_cov_28.821705:1-250 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 93, Coverage: 3, minDepth: 5 [pilon] Confirmed 29 of 250 bases (11.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11864_length_250_cov_28.821705:1-250 [pilon] Processing NODE_10357_length_311_cov_12.915789:1-311 [pilon] NODE_14053_length_243_cov_13.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14053_length_243_cov_13.811475:1-243 [pilon] Processing NODE_1911_length_1110_cov_8.350859:1-1110 [pilon] NODE_1045_length_1471_cov_2.241481:1-1471 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 80, Coverage: 7, minDepth: 5 [pilon] Confirmed 828 of 1471 bases (56.29%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1045_length_1471_cov_2.241481:1-1471 [pilon] Processing NODE_14334_length_243_cov_11.590164:1-243 [pilon] NODE_2839_length_904_cov_1.298851:1-904 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 33, Coverage: 5, minDepth: 5 [pilon] Confirmed 451 of 904 bases (49.89%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2839_length_904_cov_1.298851:1-904 [pilon] Processing NODE_13562_length_243_cov_17.786885:1-243 [pilon] NODE_2432_length_982_cov_19.354239:1-982 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 406, Coverage: 43, minDepth: 11 [pilon] Confirmed 855 of 982 bases (87.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2432_length_982_cov_19.354239:1-982 [pilon] Processing NODE_7782_length_428_cov_62.889251:1-428 [pilon] NODE_14612_length_243_cov_9.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14612_length_243_cov_9.303279:1-243 [pilon] Processing NODE_5338_length_590_cov_3.279318:1-590 [pilon] NODE_11375_length_268_cov_17.544218:1-268 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 49, Coverage: 7, minDepth: 5 [pilon] Confirmed 205 of 268 bases (76.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11375_length_268_cov_17.544218:1-268 [pilon] Processing NODE_11793_length_253_cov_14.083333:1-253 [pilon] NODE_7302_length_454_cov_2.702703:1-454 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 20, Coverage: 6, minDepth: 5 [pilon] Confirmed 274 of 454 bases (60.35%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7302_length_454_cov_2.702703:1-454 [pilon] Processing NODE_11948_length_247_cov_26.531746:1-247 [pilon] NODE_7735_length_430_cov_48.236246:1-430 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 362, Coverage: 63, minDepth: 16 [pilon] Confirmed 372 of 430 bases (86.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7735_length_430_cov_48.236246:1-430 [pilon] Processing NODE_9162_length_359_cov_19.642857:1-359 [pilon] NODE_5431_length_582_cov_11.327549:1-582 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 124, Coverage: 12, minDepth: 5 [pilon] Confirmed 440 of 582 bases (75.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5431_length_582_cov_11.327549:1-582 [pilon] Processing NODE_15105_length_218_cov_6.618557:1-218 [pilon] NODE_14567_length_243_cov_9.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14567_length_243_cov_9.770492:1-243 [pilon] Processing NODE_9227_length_357_cov_10.271186:1-357 [pilon] NODE_11709_length_255_cov_30.477612:1-255 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 76, Coverage: 8, minDepth: 5 [pilon] Confirmed 191 of 255 bases (74.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11709_length_255_cov_30.477612:1-255 [pilon] Processing NODE_13156_length_243_cov_21.475410:1-243 [pilon] NODE_2805_length_908_cov_28.241423:1-908 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 587, Coverage: 49, minDepth: 12 [pilon] Confirmed 635 of 908 bases (69.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2805_length_908_cov_28.241423:1-908 [pilon] Processing NODE_3413_length_797_cov_9.887574:1-797 [pilon] NODE_12063_length_245_cov_20.338710:1-245 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 49, Coverage: 4, minDepth: 5 [pilon] Confirmed 48 of 245 bases (19.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12063_length_245_cov_20.338710:1-245 [pilon] Processing NODE_4340_length_677_cov_3.014388:1-677 [pilon] NODE_11814_length_252_cov_21.381679:1-252 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 59, Coverage: 6, minDepth: 5 [pilon] Confirmed 144 of 252 bases (57.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11814_length_252_cov_21.381679:1-252 [pilon] Processing NODE_11623_length_258_cov_27.605839:1-258 [pilon] NODE_2352_length_1000_cov_18.953356:1-1000 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 436, Coverage: 57, minDepth: 14 [pilon] Confirmed 635 of 1000 bases (63.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2352_length_1000_cov_18.953356:1-1000 [pilon] Processing NODE_12481_length_243_cov_29.434426:1-243 [pilon] NODE_11615_length_259_cov_9.500000:1-259 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 32, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 259 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12387_length_243_cov_31.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11615_length_259_cov_9.500000:1-259 [pilon] Finished processing NODE_12387_length_243_cov_31.319672:1-243 [pilon] Processing NODE_2182_length_1038_cov_29.931298:1-1038 [pilon] Processing NODE_3959_length_720_cov_3.676127:1-720 [pilon] NODE_7782_length_428_cov_62.889251:1-428 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 439, Coverage: 72, minDepth: 18 [pilon] Confirmed 361 of 428 bases (84.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7782_length_428_cov_62.889251:1-428 [pilon] Processing NODE_4451_length_666_cov_6.851376:1-666 [pilon] NODE_15104_length_220_cov_3.848485:1-220 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 220 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15104_length_220_cov_3.848485:1-220 [pilon] Processing NODE_5349_length_588_cov_20.706638:1-588 [pilon] NODE_14541_length_243_cov_9.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14541_length_243_cov_9.975410:1-243 [pilon] Processing NODE_11096_length_279_cov_29.082278:1-279 [pilon] NODE_4954_length_622_cov_4.790419:1-622 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 54, Coverage: 11, minDepth: 5 [pilon] Confirmed 468 of 622 bases (75.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4954_length_622_cov_4.790419:1-622 [pilon] Processing NODE_12908_length_243_cov_24.016393:1-243 [pilon] NODE_12358_length_243_cov_31.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12358_length_243_cov_31.893443:1-243 [pilon] Processing NODE_7320_length_452_cov_26.344411:1-452 [pilon] NODE_4349_length_676_cov_4.518919:1-676 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 69, Coverage: 13, minDepth: 5 [pilon] Confirmed 555 of 676 bases (82.10%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4349_length_676_cov_4.518919:1-676 [pilon] Processing NODE_5743_length_560_cov_8.694761:1-560 [pilon] NODE_954_length_1526_cov_8.772242:1-1526 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 297, Coverage: 21, minDepth: 5 [pilon] Confirmed 1167 of 1526 bases (76.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_954_length_1526_cov_8.772242:1-1526 [pilon] Processing NODE_5622_length_569_cov_1.988839:1-569 [pilon] NODE_13562_length_243_cov_17.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13562_length_243_cov_17.786885:1-243 [pilon] Processing NODE_3031_length_868_cov_0.843373:1-868 [pilon] NODE_3495_length_784_cov_28.764706:1-784 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 414, Coverage: 58, minDepth: 15 [pilon] Confirmed 508 of 784 bases (64.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3495_length_784_cov_28.764706:1-784 [pilon] Processing NODE_9962_length_327_cov_20.019417:1-327 [pilon] NODE_10357_length_311_cov_12.915789:1-311 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 51, Coverage: 3, minDepth: 5 [pilon] Confirmed 89 of 311 bases (28.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10357_length_311_cov_12.915789:1-311 [pilon] Processing NODE_13967_length_243_cov_14.377049:1-243 [pilon] NODE_14334_length_243_cov_11.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14334_length_243_cov_11.590164:1-243 [pilon] Processing NODE_13465_length_243_cov_18.745902:1-243 [pilon] NODE_115_length_2905_cov_19.911279:1-2905 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 1345, Coverage: 59, minDepth: 15 [pilon] Confirmed 2325 of 2905 bases (80.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_115_length_2905_cov_19.911279:1-2905 [pilon] Processing NODE_9157_length_359_cov_38.831933:1-359 [pilon] NODE_12491_length_243_cov_29.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12491_length_243_cov_29.262295:1-243 [pilon] Processing NODE_6025_length_539_cov_1.444976:1-539 [pilon] NODE_13426_length_243_cov_19.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13426_length_243_cov_19.049180:1-243 [pilon] Processing NODE_11302_length_272_cov_14.251656:1-272 [pilon] NODE_1911_length_1110_cov_8.350859:1-1110 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 223, Coverage: 20, minDepth: 5 [pilon] Confirmed 926 of 1110 bases (83.42%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1911_length_1110_cov_8.350859:1-1110 [pilon] Processing NODE_10883_length_288_cov_34.628743:1-288 [pilon] NODE_5338_length_590_cov_3.279318:1-590 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 35, Coverage: 8, minDepth: 5 [pilon] Confirmed 323 of 590 bases (54.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5338_length_590_cov_3.279318:1-590 [pilon] Processing NODE_4735_length_640_cov_56.306358:1-640 [pilon] NODE_11793_length_253_cov_14.083333:1-253 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 47, Coverage: 7, minDepth: 5 [pilon] Confirmed 184 of 253 bases (72.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11793_length_253_cov_14.083333:1-253 [pilon] Processing NODE_11243_length_273_cov_29.703947:1-273 [pilon] NODE_11948_length_247_cov_26.531746:1-247 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 75, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 247 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11948_length_247_cov_26.531746:1-247 [pilon] Processing NODE_14126_length_243_cov_13.303279:1-243 [pilon] NODE_9162_length_359_cov_19.642857:1-359 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 109, Coverage: 13, minDepth: 5 [pilon] Confirmed 229 of 359 bases (63.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9162_length_359_cov_19.642857:1-359 [pilon] Processing NODE_14545_length_243_cov_9.926230:1-243 [pilon] NODE_13156_length_243_cov_21.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13156_length_243_cov_21.475410:1-243 [pilon] Processing NODE_4639_length_648_cov_31.977230:1-648 [pilon] NODE_11623_length_258_cov_27.605839:1-258 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 88, Coverage: 6, minDepth: 5 [pilon] Confirmed 143 of 258 bases (55.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11623_length_258_cov_27.605839:1-258 [pilon] Processing NODE_4039_length_711_cov_22.613559:1-711 [pilon] NODE_15105_length_218_cov_6.618557:1-218 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 218 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15105_length_218_cov_6.618557:1-218 [pilon] Processing NODE_12607_length_243_cov_27.491803:1-243 [pilon] NODE_9227_length_357_cov_10.271186:1-357 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 61, Coverage: 2, minDepth: 5 [pilon] Confirmed 42 of 357 bases (11.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9227_length_357_cov_10.271186:1-357 [pilon] Processing NODE_13030_length_243_cov_22.631148:1-243 [pilon] NODE_4340_length_677_cov_3.014388:1-677 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 383 of 677 bases (56.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4340_length_677_cov_3.014388:1-677 [pilon] Processing NODE_7056_length_468_cov_0.536023:1-468 [pilon] NODE_3413_length_797_cov_9.887574:1-797 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 195, Coverage: 19, minDepth: 5 [pilon] Confirmed 675 of 797 bases (84.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3413_length_797_cov_9.887574:1-797 [pilon] Processing NODE_4575_length_655_cov_35.014981:1-655 [pilon] NODE_4451_length_666_cov_6.851376:1-666 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 88, Coverage: 8, minDepth: 5 [pilon] Confirmed 441 of 666 bases (66.22%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4451_length_666_cov_6.851376:1-666 [pilon] Processing NODE_6956_length_474_cov_11.498584:1-474 [pilon] NODE_3031_length_868_cov_0.843373:1-868 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 19, Coverage: 3, minDepth: 5 [pilon] Confirmed 136 of 868 bases (15.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3031_length_868_cov_0.843373:1-868 [pilon] Processing NODE_6333_length_515_cov_1.774112:1-515 [pilon] NODE_5622_length_569_cov_1.988839:1-569 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 332 of 569 bases (58.35%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5622_length_569_cov_1.988839:1-569 [pilon] Processing NODE_5570_length_573_cov_4.415929:1-573 [pilon] NODE_12481_length_243_cov_29.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12481_length_243_cov_29.434426:1-243 [pilon] Processing NODE_3109_length_850_cov_7.768176:1-850 [pilon] NODE_3959_length_720_cov_3.676127:1-720 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 68, Coverage: 11, minDepth: 5 [pilon] Confirmed 567 of 720 bases (78.75%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3959_length_720_cov_3.676127:1-720 [pilon] Processing NODE_3591_length_770_cov_28.748844:1-770 [pilon] NODE_12908_length_243_cov_24.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12908_length_243_cov_24.016393:1-243 [pilon] Processing NODE_7856_length_425_cov_0.838816:1-425 [pilon] NODE_11096_length_279_cov_29.082278:1-279 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 101, Coverage: 7, minDepth: 5 [pilon] Confirmed 178 of 279 bases (63.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11096_length_279_cov_29.082278:1-279 [pilon] Processing NODE_14112_length_243_cov_13.401639:1-243 [pilon] NODE_7320_length_452_cov_26.344411:1-452 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 208, Coverage: 37, minDepth: 9 [pilon] Confirmed 378 of 452 bases (83.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7320_length_452_cov_26.344411:1-452 [pilon] Processing NODE_1019_length_1486_cov_27.120879:1-1486 [pilon] NODE_5349_length_588_cov_20.706638:1-588 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 232, Coverage: 36, minDepth: 9 [pilon] Confirmed 436 of 588 bases (74.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5349_length_588_cov_20.706638:1-588 [pilon] Processing NODE_10986_length_285_cov_12.847561:1-285 [pilon] NODE_2182_length_1038_cov_29.931298:1-1038 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 672, Coverage: 53, minDepth: 13 [pilon] Confirmed 771 of 1038 bases (74.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2182_length_1038_cov_29.931298:1-1038 [pilon] Processing NODE_3724_length_751_cov_27.877778:1-751 [pilon] NODE_5743_length_560_cov_8.694761:1-560 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 171, Coverage: 21, minDepth: 5 [pilon] Confirmed 425 of 560 bases (75.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5743_length_560_cov_8.694761:1-560 [pilon] Processing NODE_14209_length_243_cov_12.532787:1-243 [pilon] NODE_9962_length_327_cov_20.019417:1-327 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 88, Coverage: 19, minDepth: 5 [pilon] Confirmed 288 of 327 bases (88.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9962_length_327_cov_20.019417:1-327 [pilon] Processing NODE_13115_length_243_cov_21.836066:1-243 [pilon] NODE_4639_length_648_cov_31.977230:1-648 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 368, Coverage: 58, minDepth: 15 [pilon] Confirmed 526 of 648 bases (81.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_6025_length_539_cov_1.444976:1-539 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 166 of 539 bases (30.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6025_length_539_cov_1.444976:1-539 [pilon] Finished processing NODE_4639_length_648_cov_31.977230:1-648 [pilon] Processing NODE_2494_length_969_cov_1.620283:1-969 [pilon] Processing NODE_3834_length_736_cov_19.471545:1-736 [pilon] NODE_9157_length_359_cov_38.831933:1-359 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 202, Coverage: 33, minDepth: 8 [pilon] Confirmed 311 of 359 bases (86.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9157_length_359_cov_38.831933:1-359 [pilon] Processing NODE_3572_length_774_cov_7.869832:1-774 [pilon] NODE_13967_length_243_cov_14.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13967_length_243_cov_14.377049:1-243 [pilon] Processing NODE_10001_length_325_cov_21.764706:1-325 [pilon] NODE_11302_length_272_cov_14.251656:1-272 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 47, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 272 bases (47.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11302_length_272_cov_14.251656:1-272 [pilon] Processing NODE_3091_length_855_cov_1.363760:1-855 [pilon] NODE_13465_length_243_cov_18.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13465_length_243_cov_18.745902:1-243 [pilon] Processing NODE_5453_length_580_cov_26.867102:1-580 [pilon] NODE_4039_length_711_cov_22.613559:1-711 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 357, Coverage: 32, minDepth: 8 [pilon] Confirmed 523 of 711 bases (73.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4039_length_711_cov_22.613559:1-711 [pilon] Processing NODE_8929_length_369_cov_28.362903:1-369 [pilon] NODE_10883_length_288_cov_34.628743:1-288 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 127, Coverage: 9, minDepth: 5 [pilon] Confirmed 192 of 288 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10883_length_288_cov_34.628743:1-288 [pilon] Processing NODE_796_length_1629_cov_1.968170:1-1629 [pilon] NODE_6956_length_474_cov_11.498584:1-474 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 75, Coverage: 11, minDepth: 5 [pilon] Confirmed 304 of 474 bases (64.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6956_length_474_cov_11.498584:1-474 [pilon] Processing NODE_7379_length_449_cov_37.170732:1-449 [pilon] NODE_14126_length_243_cov_13.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14126_length_243_cov_13.303279:1-243 [pilon] Processing NODE_11866_length_250_cov_23.565891:1-250 [pilon] NODE_11243_length_273_cov_29.703947:1-273 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 107, Coverage: 10, minDepth: 5 [pilon] Confirmed 220 of 273 bases (80.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11243_length_273_cov_29.703947:1-273 [pilon] Processing NODE_10084_length_321_cov_29.020000:1-321 [pilon] NODE_4735_length_640_cov_56.306358:1-640 log: [pilon] frags shovill.bam: coverage 97 [pilon] Total Reads: 633, Coverage: 97, minDepth: 24 [pilon] Confirmed 555 of 640 bases (86.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4735_length_640_cov_56.306358:1-640 [pilon] Processing NODE_10636_length_300_cov_15.100559:1-300 [pilon] NODE_14545_length_243_cov_9.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14545_length_243_cov_9.926230:1-243 [pilon] Processing NODE_9868_length_331_cov_8.123810:1-331 [pilon] NODE_13030_length_243_cov_22.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13030_length_243_cov_22.631148:1-243 [pilon] Processing NODE_4346_length_676_cov_20.850450:1-676 [pilon] NODE_12607_length_243_cov_27.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12607_length_243_cov_27.491803:1-243 [pilon] Processing NODE_13110_length_243_cov_21.868852:1-243 [pilon] NODE_7056_length_468_cov_0.536023:1-468 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 8, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 468 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7056_length_468_cov_0.536023:1-468 [pilon] Processing NODE_156_length_2699_cov_13.503103:1-2699 [pilon] NODE_6333_length_515_cov_1.774112:1-515 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 301 of 515 bases (58.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6333_length_515_cov_1.774112:1-515 [pilon] Processing NODE_36_length_4172_cov_20.277462:1-4172 [pilon] NODE_4575_length_655_cov_35.014981:1-655 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 431, Coverage: 68, minDepth: 17 [pilon] Confirmed 519 of 655 bases (79.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4575_length_655_cov_35.014981:1-655 [pilon] Processing NODE_3373_length_802_cov_1.602056:1-802 [pilon] NODE_8929_length_369_cov_28.362903:1-369 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 142, Coverage: 27, minDepth: 7 [pilon] Confirmed 290 of 369 bases (78.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8929_length_369_cov_28.362903:1-369 [pilon] Processing NODE_4937_length_623_cov_5.205179:1-623 [pilon] NODE_3834_length_736_cov_19.471545:1-736 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 258, Coverage: 20, minDepth: 5 [pilon] Confirmed 619 of 736 bases (84.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3834_length_736_cov_19.471545:1-736 [pilon] Processing NODE_5186_length_603_cov_1.844398:1-603 [pilon] NODE_5570_length_573_cov_4.415929:1-573 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 45, Coverage: 10, minDepth: 5 [pilon] Confirmed 388 of 573 bases (67.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5570_length_573_cov_4.415929:1-573 [pilon] NODE_3109_length_850_cov_7.768176:1-850 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 162, Coverage: 13, minDepth: 5 [pilon] Confirmed 754 of 850 bases (88.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_5794_length_555_cov_44.195853:1-555 [pilon] Finished processing NODE_3109_length_850_cov_7.768176:1-850 [pilon] Processing NODE_656_length_1741_cov_24.046914:1-1741 [pilon] NODE_7856_length_425_cov_0.838816:1-425 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 3, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 425 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7856_length_425_cov_0.838816:1-425 [pilon] Processing NODE_7703_length_432_cov_19.263666:1-432 [pilon] NODE_14112_length_243_cov_13.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14112_length_243_cov_13.401639:1-243 [pilon] Processing NODE_12050_length_245_cov_42.483871:1-245 [pilon] NODE_3591_length_770_cov_28.748844:1-770 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 429, Coverage: 56, minDepth: 14 [pilon] Confirmed 708 of 770 bases (91.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3591_length_770_cov_28.748844:1-770 [pilon] Processing NODE_12414_length_243_cov_30.655738:1-243 [pilon] NODE_7379_length_449_cov_37.170732:1-449 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 280, Coverage: 43, minDepth: 11 [pilon] Confirmed 372 of 449 bases (82.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7379_length_449_cov_37.170732:1-449 [pilon] Processing NODE_8264_length_405_cov_64.197183:1-405 [pilon] NODE_1019_length_1486_cov_27.120879:1-1486 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 976, Coverage: 69, minDepth: 17 [pilon] Confirmed 1092 of 1486 bases (73.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1019_length_1486_cov_27.120879:1-1486 [pilon] Processing NODE_12281_length_243_cov_33.639344:1-243 [pilon] NODE_10986_length_285_cov_12.847561:1-285 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 48, Coverage: 4, minDepth: 5 [pilon] Confirmed 124 of 285 bases (43.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10986_length_285_cov_12.847561:1-285 [pilon] Processing NODE_6697_length_490_cov_25.295393:1-490 [pilon] NODE_3724_length_751_cov_27.877778:1-751 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 404, Coverage: 42, minDepth: 11 [pilon] Confirmed 504 of 751 bases (67.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3724_length_751_cov_27.877778:1-751 [pilon] Processing NODE_5434_length_582_cov_1.616052:1-582 [pilon] NODE_5453_length_580_cov_26.867102:1-580 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 272, Coverage: 29, minDepth: 7 [pilon] Confirmed 425 of 580 bases (73.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5453_length_580_cov_26.867102:1-580 [pilon] Processing NODE_1354_length_1317_cov_32.327759:1-1317 [pilon] NODE_10001_length_325_cov_21.764706:1-325 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 100, Coverage: 12, minDepth: 5 [pilon] Confirmed 225 of 325 bases (69.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10001_length_325_cov_21.764706:1-325 [pilon] Processing NODE_13964_length_243_cov_14.385246:1-243 [pilon] NODE_13115_length_243_cov_21.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13115_length_243_cov_21.836066:1-243 [pilon] Processing NODE_12200_length_243_cov_36.754098:1-243 [pilon] NODE_14209_length_243_cov_12.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14209_length_243_cov_12.532787:1-243 [pilon] Processing NODE_867_length_1584_cov_2.922761:1-1584 [pilon] NODE_3091_length_855_cov_1.363760:1-855 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 31, Coverage: 5, minDepth: 5 [pilon] Confirmed 511 of 855 bases (59.77%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3091_length_855_cov_1.363760:1-855 [pilon] Processing NODE_13466_length_243_cov_18.713115:1-243 [pilon] NODE_2494_length_969_cov_1.620283:1-969 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 36, Coverage: 5, minDepth: 5 [pilon] Confirmed 398 of 969 bases (41.07%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2494_length_969_cov_1.620283:1-969 [pilon] Processing NODE_3463_length_790_cov_4.372197:1-790 [pilon] NODE_3572_length_774_cov_7.869832:1-774 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 134, Coverage: 16, minDepth: 5 [pilon] Confirmed 551 of 774 bases (71.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3572_length_774_cov_7.869832:1-774 [pilon] Processing NODE_10855_length_290_cov_18.757396:1-290 [pilon] NODE_796_length_1629_cov_1.968170:1-1629 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 97, Coverage: 8, minDepth: 5 [pilon] Confirmed 1328 of 1629 bases (81.52%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_796_length_1629_cov_1.968170:1-1629 [pilon] Processing NODE_7288_length_455_cov_11.796407:1-455 [pilon] NODE_10084_length_321_cov_29.020000:1-321 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 95, Coverage: 4, minDepth: 5 [pilon] Confirmed 132 of 321 bases (41.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10084_length_321_cov_29.020000:1-321 [pilon] Processing NODE_14610_length_243_cov_9.311475:1-243 [pilon] NODE_11866_length_250_cov_23.565891:1-250 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 64, Coverage: 3, minDepth: 5 [pilon] Confirmed 49 of 250 bases (19.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11866_length_250_cov_23.565891:1-250 [pilon] Processing NODE_13650_length_243_cov_17.016393:1-243 [pilon] NODE_10636_length_300_cov_15.100559:1-300 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 76, Coverage: 10, minDepth: 5 [pilon] Confirmed 216 of 300 bases (72.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10636_length_300_cov_15.100559:1-300 [pilon] Processing NODE_2213_length_1030_cov_17.972497:1-1030 [pilon] NODE_5186_length_603_cov_1.844398:1-603 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 27, Coverage: 6, minDepth: 5 [pilon] Confirmed 296 of 603 bases (49.09%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5186_length_603_cov_1.844398:1-603 [pilon] Processing NODE_14794_length_243_cov_7.762295:1-243 [pilon] NODE_9868_length_331_cov_8.123810:1-331 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 42, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 331 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9868_length_331_cov_8.123810:1-331 [pilon] Processing NODE_10736_length_296_cov_43.937143:1-296 [pilon] NODE_4937_length_623_cov_5.205179:1-623 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 64, Coverage: 13, minDepth: 5 [pilon] Confirmed 524 of 623 bases (84.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4937_length_623_cov_5.205179:1-623 [pilon] Processing NODE_14668_length_243_cov_8.860656:1-243 [pilon] NODE_13110_length_243_cov_21.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13110_length_243_cov_21.868852:1-243 [pilon] Processing NODE_2069_length_1068_cov_2.907075:1-1068 [pilon] NODE_4346_length_676_cov_20.850450:1-676 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 265, Coverage: 26, minDepth: 7 [pilon] Confirmed 636 of 676 bases (94.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4346_length_676_cov_20.850450:1-676 [pilon] Processing NODE_1346_length_1322_cov_25.445462:1-1322 [pilon] NODE_3373_length_802_cov_1.602056:1-802 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 34, Coverage: 5, minDepth: 5 [pilon] Confirmed 326 of 802 bases (40.65%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3373_length_802_cov_1.602056:1-802 [pilon] Processing NODE_4725_length_641_cov_17.663462:1-641 [pilon] NODE_8264_length_405_cov_64.197183:1-405 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 438, Coverage: 75, minDepth: 19 [pilon] Confirmed 358 of 405 bases (88.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8264_length_405_cov_64.197183:1-405 [pilon] Processing NODE_14036_length_243_cov_13.934426:1-243 [pilon] NODE_156_length_2699_cov_13.503103:1-2699 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 916, Coverage: 36, minDepth: 9 [pilon] Confirmed 2134 of 2699 bases (79.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_156_length_2699_cov_13.503103:1-2699 [pilon] Processing NODE_13244_length_243_cov_20.688525:1-243 [pilon] NODE_36_length_4172_cov_20.277462:1-4172 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 1861, Coverage: 58, minDepth: 15 [pilon] Confirmed 3580 of 4172 bases (85.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_36_length_4172_cov_20.277462:1-4172 [pilon] Processing NODE_8481_length_395_cov_15.788321:1-395 [pilon] NODE_7703_length_432_cov_19.263666:1-432 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 137, Coverage: 18, minDepth: 5 [pilon] Confirmed 310 of 432 bases (71.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7703_length_432_cov_19.263666:1-432 [pilon] Processing NODE_13664_length_243_cov_16.836066:1-243 [pilon] NODE_5794_length_555_cov_44.195853:1-555 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 453, Coverage: 52, minDepth: 13 [pilon] Confirmed 301 of 555 bases (54.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5794_length_555_cov_44.195853:1-555 [pilon] Processing NODE_13543_length_243_cov_17.967213:1-243 [pilon] NODE_12414_length_243_cov_30.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12414_length_243_cov_30.655738:1-243 [pilon] Processing NODE_2611_length_943_cov_14.469586:1-943 [pilon] NODE_12050_length_245_cov_42.483871:1-245 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 130, Coverage: 9, minDepth: 5 [pilon] Confirmed 205 of 245 bases (83.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12050_length_245_cov_42.483871:1-245 [pilon] Processing NODE_13924_length_243_cov_14.713115:1-243 [pilon] NODE_6697_length_490_cov_25.295393:1-490 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 221, Coverage: 22, minDepth: 6 [pilon] Confirmed 357 of 490 bases (72.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6697_length_490_cov_25.295393:1-490 [pilon] Processing NODE_7299_length_454_cov_3.426426:1-454 [pilon] NODE_5434_length_582_cov_1.616052:1-582 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 25, Coverage: 5, minDepth: 5 [pilon] Confirmed 359 of 582 bases (61.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5434_length_582_cov_1.616052:1-582 [pilon] Processing NODE_10483_length_306_cov_6.800000:1-306 [pilon] NODE_12281_length_243_cov_33.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12281_length_243_cov_33.639344:1-243 [pilon] Processing NODE_14559_length_243_cov_9.836066:1-243 [pilon] NODE_13964_length_243_cov_14.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13964_length_243_cov_14.385246:1-243 [pilon] Processing NODE_3143_length_843_cov_12.908587:1-843 [pilon] NODE_656_length_1741_cov_24.046914:1-1741 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 1042, Coverage: 68, minDepth: 17 [pilon] Confirmed 1631 of 1741 bases (93.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_656_length_1741_cov_24.046914:1-1741 [pilon] Processing NODE_4215_length_692_cov_12.136602:1-692 [pilon] NODE_14794_length_243_cov_7.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14794_length_243_cov_7.762295:1-243 [pilon] Processing NODE_13193_length_243_cov_21.155738:1-243 [pilon] NODE_12200_length_243_cov_36.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 99, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12200_length_243_cov_36.754098:1-243 [pilon] Processing NODE_9352_length_352_cov_8.761905:1-352 [pilon] NODE_867_length_1584_cov_2.922761:1-1584 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 112, Coverage: 9, minDepth: 5 [pilon] Confirmed 1330 of 1584 bases (83.96%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_867_length_1584_cov_2.922761:1-1584 [pilon] Processing NODE_14050_length_243_cov_13.819672:1-243 [pilon] NODE_10855_length_290_cov_18.757396:1-290 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 57, Coverage: 3, minDepth: 5 [pilon] Confirmed 114 of 290 bases (39.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10855_length_290_cov_18.757396:1-290 [pilon] Processing NODE_2974_length_879_cov_3.749340:1-879 [pilon] NODE_13466_length_243_cov_18.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13466_length_243_cov_18.713115:1-243 [pilon] Processing NODE_13835_length_243_cov_15.377049:1-243 [pilon] NODE_1354_length_1317_cov_32.327759:1-1317 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 911, Coverage: 81, minDepth: 20 [pilon] Confirmed 850 of 1317 bases (64.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1354_length_1317_cov_32.327759:1-1317 [pilon] Processing NODE_12650_length_243_cov_26.877049:1-243 [pilon] NODE_14668_length_243_cov_8.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14668_length_243_cov_8.860656:1-243 [pilon] Processing NODE_11359_length_270_cov_7.912752:1-270 [pilon] NODE_3463_length_790_cov_4.372197:1-790 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 76, Coverage: 6, minDepth: 5 [pilon] Confirmed 356 of 790 bases (45.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3463_length_790_cov_4.372197:1-790 [pilon] Processing NODE_11732_length_255_cov_22.223881:1-255 [pilon] NODE_7288_length_455_cov_11.796407:1-455 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 85, Coverage: 9, minDepth: 5 [pilon] Confirmed 310 of 455 bases (68.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7288_length_455_cov_11.796407:1-455 [pilon] Processing NODE_4882_length_628_cov_10.126233:1-628 [pilon] NODE_14610_length_243_cov_9.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14610_length_243_cov_9.311475:1-243 [pilon] Processing NODE_640_length_1762_cov_1.925046:1-1762 [pilon] NODE_14036_length_243_cov_13.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14036_length_243_cov_13.934426:1-243 [pilon] Processing NODE_8679_length_384_cov_7.057034:1-384 [pilon] NODE_13650_length_243_cov_17.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13650_length_243_cov_17.016393:1-243 [pilon] Processing NODE_13738_length_243_cov_16.122951:1-243 [pilon] NODE_2213_length_1030_cov_17.972497:1-1030 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 394, Coverage: 40, minDepth: 10 [pilon] Confirmed 831 of 1030 bases (80.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2213_length_1030_cov_17.972497:1-1030 [pilon] Processing NODE_7737_length_430_cov_31.799353:1-430 [pilon] NODE_10736_length_296_cov_43.937143:1-296 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 156, Coverage: 8, minDepth: 5 [pilon] Confirmed 180 of 296 bases (60.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10736_length_296_cov_43.937143:1-296 [pilon] Processing NODE_3508_length_782_cov_11.249622:1-782 [pilon] NODE_8481_length_395_cov_15.788321:1-395 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 113, Coverage: 10, minDepth: 5 [pilon] Confirmed 208 of 395 bases (52.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8481_length_395_cov_15.788321:1-395 [pilon] Processing NODE_10987_length_285_cov_12.274390:1-285 [pilon] NODE_2069_length_1068_cov_2.907075:1-1068 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 79, Coverage: 10, minDepth: 5 [pilon] Confirmed 862 of 1068 bases (80.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2069_length_1068_cov_2.907075:1-1068 [pilon] Processing NODE_7747_length_430_cov_1.116505:1-430 [pilon] NODE_4725_length_641_cov_17.663462:1-641 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 251, Coverage: 23, minDepth: 6 [pilon] Confirmed 415 of 641 bases (64.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4725_length_641_cov_17.663462:1-641 [pilon] Processing NODE_13634_length_243_cov_17.172131:1-243 [pilon] NODE_1346_length_1322_cov_25.445462:1-1322 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 683, Coverage: 55, minDepth: 14 [pilon] Confirmed 1248 of 1322 bases (94.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1346_length_1322_cov_25.445462:1-1322 [pilon] Processing NODE_2096_length_1061_cov_1.663830:1-1061 [pilon] NODE_13244_length_243_cov_20.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13244_length_243_cov_20.688525:1-243 [pilon] Processing NODE_7451_length_446_cov_1.424615:1-446 [pilon] NODE_3143_length_843_cov_12.908587:1-843 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 219, Coverage: 27, minDepth: 7 [pilon] Confirmed 633 of 843 bases (75.09%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3143_length_843_cov_12.908587:1-843 [pilon] Processing NODE_13354_length_243_cov_19.811475:1-243 [pilon] NODE_13193_length_243_cov_21.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13193_length_243_cov_21.155738:1-243 [pilon] Processing NODE_13248_length_243_cov_20.672131:1-243 [pilon] NODE_13664_length_243_cov_16.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13664_length_243_cov_16.836066:1-243 [pilon] Processing NODE_1671_length_1192_cov_8.540616:1-1192 [pilon] NODE_13924_length_243_cov_14.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_13543_length_243_cov_17.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13924_length_243_cov_14.713115:1-243 [pilon] Finished processing NODE_13543_length_243_cov_17.967213:1-243 [pilon] Processing NODE_9954_length_327_cov_25.713592:1-327 [pilon] Processing NODE_9110_length_361_cov_11.616667:1-361 [pilon] NODE_7299_length_454_cov_3.426426:1-454 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 24, Coverage: 7, minDepth: 5 [pilon] Confirmed 278 of 454 bases (61.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7299_length_454_cov_3.426426:1-454 [pilon] Processing NODE_10553_length_303_cov_11.258242:1-303 [pilon] NODE_2611_length_943_cov_14.469586:1-943 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 302, Coverage: 29, minDepth: 7 [pilon] Confirmed 692 of 943 bases (73.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2611_length_943_cov_14.469586:1-943 [pilon] Processing NODE_13357_length_243_cov_19.778689:1-243 [pilon] NODE_10483_length_306_cov_6.800000:1-306 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 306 bases (42.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10483_length_306_cov_6.800000:1-306 [pilon] Processing NODE_2146_length_1047_cov_14.694384:1-1047 [pilon] NODE_14559_length_243_cov_9.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14559_length_243_cov_9.836066:1-243 [pilon] Processing NODE_2928_length_887_cov_5.271540:1-887 [pilon] NODE_8679_length_384_cov_7.057034:1-384 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 52, Coverage: 5, minDepth: 5 [pilon] Confirmed 217 of 384 bases (56.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8679_length_384_cov_7.057034:1-384 [pilon] Processing NODE_8150_length_411_cov_8.620690:1-411 [pilon] NODE_14050_length_243_cov_13.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14050_length_243_cov_13.819672:1-243 [pilon] Processing NODE_11222_length_275_cov_13.331169:1-275 [pilon] NODE_12650_length_243_cov_26.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12650_length_243_cov_26.877049:1-243 [pilon] Processing NODE_14667_length_243_cov_8.868852:1-243 [pilon] NODE_4215_length_692_cov_12.136602:1-692 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 177, Coverage: 16, minDepth: 5 [pilon] Confirmed 586 of 692 bases (84.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4215_length_692_cov_12.136602:1-692 [pilon] Processing NODE_4341_length_677_cov_1.323741:1-677 [pilon] NODE_13835_length_243_cov_15.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13835_length_243_cov_15.377049:1-243 [pilon] NODE_11359_length_270_cov_7.912752:1-270 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 131 of 270 bases (48.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11359_length_270_cov_7.912752:1-270 [pilon] Processing NODE_6849_length_480_cov_31.938719:1-480 [pilon] Processing NODE_6149_length_528_cov_19.041769:1-528 [pilon] NODE_9352_length_352_cov_8.761905:1-352 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 47, Coverage: 7, minDepth: 5 [pilon] Confirmed 178 of 352 bases (50.57%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9352_length_352_cov_8.761905:1-352 [pilon] Processing NODE_11106_length_279_cov_22.107595:1-279 [pilon] NODE_11732_length_255_cov_22.223881:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 60, Coverage: 4, minDepth: 5 [pilon] Confirmed 117 of 255 bases (45.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11732_length_255_cov_22.223881:1-255 [pilon] Processing NODE_8208_length_408_cov_9.871080:1-408 [pilon] NODE_2974_length_879_cov_3.749340:1-879 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 62, Coverage: 9, minDepth: 5 [pilon] Confirmed 576 of 879 bases (65.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2974_length_879_cov_3.749340:1-879 [pilon] Processing NODE_8995_length_366_cov_67.832653:1-366 [pilon] NODE_4882_length_628_cov_10.126233:1-628 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 127, Coverage: 13, minDepth: 5 [pilon] Confirmed 500 of 628 bases (79.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4882_length_628_cov_10.126233:1-628 [pilon] Processing NODE_3453_length_791_cov_21.576119:1-791 [pilon] NODE_640_length_1762_cov_1.925046:1-1762 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 104, Coverage: 7, minDepth: 5 [pilon] Confirmed 1254 of 1762 bases (71.17%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_640_length_1762_cov_1.925046:1-1762 [pilon] Processing NODE_13229_length_243_cov_20.844262:1-243 [pilon] NODE_13738_length_243_cov_16.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13738_length_243_cov_16.122951:1-243 [pilon] Processing NODE_9216_length_357_cov_16.563559:1-357 [pilon] NODE_13248_length_243_cov_20.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13248_length_243_cov_20.672131:1-243 [pilon] Processing NODE_4322_length_678_cov_20.836625:1-678 [pilon] NODE_10987_length_285_cov_12.274390:1-285 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 46, Coverage: 3, minDepth: 5 [pilon] Confirmed 53 of 285 bases (18.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10987_length_285_cov_12.274390:1-285 [pilon] Processing NODE_7083_length_466_cov_1.826087:1-466 [pilon] NODE_7737_length_430_cov_31.799353:1-430 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 234, Coverage: 38, minDepth: 10 [pilon] Confirmed 404 of 430 bases (93.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7737_length_430_cov_31.799353:1-430 [pilon] NODE_3508_length_782_cov_11.249622:1-782 log: [pilon] Processing NODE_12427_length_243_cov_30.393443:1-243 [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 172, Coverage: 16, minDepth: 5 [pilon] Confirmed 540 of 782 bases (69.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3508_length_782_cov_11.249622:1-782 [pilon] Processing NODE_1131_length_1425_cov_10.419479:1-1425 [pilon] NODE_7747_length_430_cov_1.116505:1-430 log: [pilon] NODE_13634_length_243_cov_17.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13634_length_243_cov_17.172131:1-243 [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 120 of 430 bases (27.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7747_length_430_cov_1.116505:1-430 [pilon] Processing NODE_2625_length_942_cov_2.506699:1-942 [pilon] Processing NODE_15191_length_162_cov_83.756098:1-162 [pilon] NODE_2096_length_1061_cov_1.663830:1-1061 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 45, Coverage: 6, minDepth: 5 [pilon] Confirmed 575 of 1061 bases (54.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2096_length_1061_cov_1.663830:1-1061 [pilon] Processing NODE_11231_length_274_cov_13.411765:1-274 [pilon] NODE_7451_length_446_cov_1.424615:1-446 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 258 of 446 bases (57.85%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7451_length_446_cov_1.424615:1-446 [pilon] Processing NODE_12615_length_243_cov_27.426230:1-243 [pilon] NODE_13354_length_243_cov_19.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13354_length_243_cov_19.811475:1-243 [pilon] Processing NODE_3406_length_798_cov_1.528804:1-798 [pilon] NODE_11222_length_275_cov_13.331169:1-275 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 45, Coverage: 8, minDepth: 5 [pilon] Confirmed 207 of 275 bases (75.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11222_length_275_cov_13.331169:1-275 [pilon] Processing NODE_8829_length_375_cov_25.102362:1-375 [pilon] NODE_8150_length_411_cov_8.620690:1-411 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 56, Coverage: 13, minDepth: 5 [pilon] Confirmed 295 of 411 bases (71.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8150_length_411_cov_8.620690:1-411 [pilon] Processing NODE_13683_length_243_cov_16.598361:1-243 [pilon] NODE_9110_length_361_cov_11.616667:1-361 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 64, Coverage: 5, minDepth: 5 [pilon] Confirmed 175 of 361 bases (48.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9110_length_361_cov_11.616667:1-361 [pilon] Processing NODE_2426_length_984_cov_12.750869:1-984 [pilon] NODE_1671_length_1192_cov_8.540616:1-1192 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 220, Coverage: 24, minDepth: 6 [pilon] Confirmed 867 of 1192 bases (72.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1671_length_1192_cov_8.540616:1-1192 [pilon] Processing NODE_11271_length_273_cov_13.973684:1-273 [pilon] NODE_10553_length_303_cov_11.258242:1-303 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 49, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 303 bases (42.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10553_length_303_cov_11.258242:1-303 [pilon] Processing NODE_3661_length_760_cov_2.627543:1-760 [pilon] NODE_9954_length_327_cov_25.713592:1-327 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 129, Coverage: 12, minDepth: 5 [pilon] Confirmed 249 of 327 bases (76.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9954_length_327_cov_25.713592:1-327 [pilon] Processing NODE_5696_length_564_cov_0.580135:1-564 [pilon] NODE_14667_length_243_cov_8.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14667_length_243_cov_8.868852:1-243 [pilon] NODE_6149_length_528_cov_19.041769:1-528 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 180, Coverage: 25, minDepth: 6 [pilon] Confirmed 451 of 528 bases (85.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_7489_length_444_cov_1.291022:1-444 [pilon] Finished processing NODE_6149_length_528_cov_19.041769:1-528 [pilon] Processing NODE_4020_length_713_cov_21.599662:1-713 [pilon] NODE_2928_length_887_cov_5.271540:1-887 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 96, Coverage: 14, minDepth: 5 [pilon] Confirmed 733 of 887 bases (82.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2928_length_887_cov_5.271540:1-887 [pilon] Processing NODE_13563_length_243_cov_17.778689:1-243 [pilon] NODE_2146_length_1047_cov_14.694384:1-1047 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 348, Coverage: 20, minDepth: 5 [pilon] Confirmed 814 of 1047 bases (77.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2146_length_1047_cov_14.694384:1-1047 [pilon] Processing NODE_1956_length_1096_cov_19.344615:1-1096 [pilon] NODE_11106_length_279_cov_22.107595:1-279 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 72, Coverage: 6, minDepth: 5 [pilon] Confirmed 164 of 279 bases (58.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11106_length_279_cov_22.107595:1-279 [pilon] Processing NODE_9204_length_357_cov_20.211864:1-357 [pilon] NODE_4341_length_677_cov_1.323741:1-677 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 210 of 677 bases (31.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4341_length_677_cov_1.323741:1-677 [pilon] Processing NODE_8586_length_389_cov_16.167910:1-389 [pilon] NODE_13357_length_243_cov_19.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13357_length_243_cov_19.778689:1-243 [pilon] Processing NODE_4956_length_622_cov_3.289421:1-622 [pilon] NODE_6849_length_480_cov_31.938719:1-480 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 262, Coverage: 37, minDepth: 9 [pilon] Confirmed 370 of 480 bases (77.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6849_length_480_cov_31.938719:1-480 [pilon] Processing NODE_11560_length_261_cov_28.864286:1-261 [pilon] NODE_8208_length_408_cov_9.871080:1-408 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 95, Coverage: 5, minDepth: 5 [pilon] Confirmed 274 of 408 bases (67.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8208_length_408_cov_9.871080:1-408 [pilon] Processing NODE_6933_length_475_cov_42.237288:1-475 [pilon] NODE_4322_length_678_cov_20.836625:1-678 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 247, Coverage: 24, minDepth: 6 [pilon] Confirmed 542 of 678 bases (79.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4322_length_678_cov_20.836625:1-678 [pilon] Processing NODE_7674_length_434_cov_13.568690:1-434 [pilon] NODE_8995_length_366_cov_67.832653:1-366 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 380, Coverage: 63, minDepth: 16 [pilon] Confirmed 325 of 366 bases (88.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8995_length_366_cov_67.832653:1-366 [pilon] Processing NODE_2624_length_942_cov_14.153471:1-942 [pilon] NODE_3453_length_791_cov_21.576119:1-791 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 370, Coverage: 28, minDepth: 7 [pilon] Confirmed 463 of 791 bases (58.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3453_length_791_cov_21.576119:1-791 [pilon] Processing NODE_74_length_3257_cov_3.824936:1-3257 [pilon] NODE_9216_length_357_cov_16.563559:1-357 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 93, Coverage: 11, minDepth: 5 [pilon] Confirmed 262 of 357 bases (73.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9216_length_357_cov_16.563559:1-357 [pilon] Processing NODE_8431_length_398_cov_18.927798:1-398 [pilon] NODE_13229_length_243_cov_20.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13229_length_243_cov_20.844262:1-243 [pilon] Processing NODE_6399_length_510_cov_19.123393:1-510 [pilon] NODE_7083_length_466_cov_1.826087:1-466 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 158 of 466 bases (33.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7083_length_466_cov_1.826087:1-466 [pilon] Processing NODE_2610_length_943_cov_16.316302:1-943 [pilon] NODE_3406_length_798_cov_1.528804:1-798 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 482 of 798 bases (60.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3406_length_798_cov_1.528804:1-798 [pilon] Processing NODE_7121_length_465_cov_0.351744:1-465 [pilon] NODE_8829_length_375_cov_25.102362:1-375 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 134, Coverage: 15, minDepth: 5 [pilon] Confirmed 261 of 375 bases (69.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8829_length_375_cov_25.102362:1-375 [pilon] Processing NODE_8376_length_402_cov_0.551601:1-402 [pilon] NODE_12427_length_243_cov_30.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12427_length_243_cov_30.393443:1-243 [pilon] Processing NODE_14636_length_243_cov_9.155738:1-243 [pilon] NODE_1131_length_1425_cov_10.419479:1-1425 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 321, Coverage: 20, minDepth: 5 [pilon] Confirmed 1108 of 1425 bases (77.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1131_length_1425_cov_10.419479:1-1425 [pilon] Processing NODE_11349_length_270_cov_15.348993:1-270 [pilon] NODE_15191_length_162_cov_83.756098:1-162 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 162 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15191_length_162_cov_83.756098:1-162 [pilon] Processing NODE_2033_length_1077_cov_54.967573:1-1077 [pilon] NODE_11231_length_274_cov_13.411765:1-274 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 39, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 274 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11231_length_274_cov_13.411765:1-274 [pilon] Processing NODE_2135_length_1050_cov_14.736276:1-1050 [pilon] NODE_2625_length_942_cov_2.506699:1-942 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 53, Coverage: 7, minDepth: 5 [pilon] Confirmed 579 of 942 bases (61.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2625_length_942_cov_2.506699:1-942 [pilon] Processing NODE_12569_length_243_cov_28.049180:1-243 [pilon] NODE_13683_length_243_cov_16.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13683_length_243_cov_16.598361:1-243 [pilon] Processing NODE_7263_length_456_cov_22.307463:1-456 [pilon] NODE_12615_length_243_cov_27.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12615_length_243_cov_27.426230:1-243 [pilon] Processing NODE_10091_length_321_cov_22.890000:1-321 [pilon] NODE_2426_length_984_cov_12.750869:1-984 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 259, Coverage: 17, minDepth: 5 [pilon] Confirmed 960 of 984 bases (97.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2426_length_984_cov_12.750869:1-984 [pilon] Processing NODE_5876_length_549_cov_21.906542:1-549 [pilon] NODE_7674_length_434_cov_13.568690:1-434 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 112, Coverage: 17, minDepth: 5 [pilon] Confirmed 331 of 434 bases (76.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7674_length_434_cov_13.568690:1-434 [pilon] Processing NODE_6397_length_510_cov_19.591260:1-510 [pilon] NODE_3661_length_760_cov_2.627543:1-760 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 551 of 760 bases (72.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3661_length_760_cov_2.627543:1-760 [pilon] Processing NODE_2570_length_953_cov_15.575721:1-953 [pilon] NODE_5696_length_564_cov_0.580135:1-564 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 118 of 564 bases (20.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5696_length_564_cov_0.580135:1-564 [pilon] Processing NODE_5095_length_611_cov_0.904082:1-611 [pilon] NODE_11271_length_273_cov_13.973684:1-273 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11271_length_273_cov_13.973684:1-273 [pilon] Processing NODE_435_length_1987_cov_18.294212:1-1987 [pilon] NODE_4020_length_713_cov_21.599662:1-713 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 294, Coverage: 32, minDepth: 8 [pilon] Confirmed 627 of 713 bases (87.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4020_length_713_cov_21.599662:1-713 [pilon] Processing NODE_11049_length_282_cov_8.515528:1-282 [pilon] NODE_8586_length_389_cov_16.167910:1-389 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 99, Coverage: 2, minDepth: 5 [pilon] Confirmed 11 of 389 bases (2.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8586_length_389_cov_16.167910:1-389 [pilon] Processing NODE_8388_length_400_cov_25.430108:1-400 [pilon] NODE_7489_length_444_cov_1.291022:1-444 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 9, Coverage: 3, minDepth: 5 [pilon] Confirmed 41 of 444 bases (9.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7489_length_444_cov_1.291022:1-444 [pilon] Processing NODE_6259_length_520_cov_28.676692:1-520 [pilon] NODE_13563_length_243_cov_17.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13563_length_243_cov_17.778689:1-243 [pilon] Processing NODE_1919_length_1107_cov_11.576065:1-1107 [pilon] NODE_9204_length_357_cov_20.211864:1-357 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 102, Coverage: 13, minDepth: 5 [pilon] Confirmed 290 of 357 bases (81.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9204_length_357_cov_20.211864:1-357 [pilon] Processing NODE_8583_length_389_cov_30.768657:1-389 [pilon] NODE_1956_length_1096_cov_19.344615:1-1096 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 484, Coverage: 51, minDepth: 13 [pilon] Confirmed 804 of 1096 bases (73.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1956_length_1096_cov_19.344615:1-1096 [pilon] Processing NODE_5747_length_560_cov_2.220957:1-560 [pilon] NODE_7121_length_465_cov_0.351744:1-465 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 465 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7121_length_465_cov_0.351744:1-465 [pilon] Processing NODE_238_length_2390_cov_8.895108:1-2390 [pilon] NODE_4956_length_622_cov_3.289421:1-622 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 50, Coverage: 10, minDepth: 5 [pilon] Confirmed 453 of 622 bases (72.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4956_length_622_cov_3.289421:1-622 [pilon] Processing NODE_8046_length_416_cov_0.932203:1-416 [pilon] NODE_8376_length_402_cov_0.551601:1-402 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 9, Coverage: 3, minDepth: 5 [pilon] Confirmed 18 of 402 bases (4.48%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8376_length_402_cov_0.551601:1-402 [pilon] Processing NODE_14637_length_243_cov_9.131148:1-243 [pilon] NODE_11560_length_261_cov_28.864286:1-261 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 80, Coverage: 5, minDepth: 5 [pilon] Confirmed 159 of 261 bases (60.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11560_length_261_cov_28.864286:1-261 [pilon] Processing NODE_2644_length_939_cov_20.477995:1-939 [pilon] NODE_6933_length_475_cov_42.237288:1-475 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 374, Coverage: 32, minDepth: 8 [pilon] Confirmed 230 of 475 bases (48.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6933_length_475_cov_42.237288:1-475 [pilon] Processing NODE_10279_length_314_cov_24.886010:1-314 [pilon] NODE_2624_length_942_cov_14.153471:1-942 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 269, Coverage: 29, minDepth: 7 [pilon] Confirmed 814 of 942 bases (86.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2624_length_942_cov_14.153471:1-942 [pilon] Processing NODE_4129_length_702_cov_1.690189:1-702 [pilon] NODE_74_length_3257_cov_3.824936:1-3257 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 317, Coverage: 13, minDepth: 5 [pilon] Confirmed 2930 of 3257 bases (89.96%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_74_length_3257_cov_3.824936:1-3257 [pilon] Processing NODE_9854_length_332_cov_19.298578:1-332 [pilon] NODE_2610_length_943_cov_16.316302:1-943 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 331, Coverage: 32, minDepth: 8 [pilon] Confirmed 726 of 943 bases (76.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2610_length_943_cov_16.316302:1-943 [pilon] Processing NODE_10525_length_303_cov_27.593407:1-303 [pilon] NODE_8431_length_398_cov_18.927798:1-398 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 128, Coverage: 15, minDepth: 5 [pilon] Confirmed 273 of 398 bases (68.59%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8431_length_398_cov_18.927798:1-398 [pilon] Processing NODE_11403_length_267_cov_18.006849:1-267 [pilon] NODE_6399_length_510_cov_19.123393:1-510 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 186, Coverage: 30, minDepth: 8 [pilon] Confirmed 385 of 510 bases (75.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6399_length_510_cov_19.123393:1-510 [pilon] Processing NODE_1343_length_1323_cov_15.075707:1-1323 [pilon] NODE_14636_length_243_cov_9.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14636_length_243_cov_9.155738:1-243 [pilon] Processing NODE_8464_length_396_cov_12.923636:1-396 [pilon] NODE_12569_length_243_cov_28.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12569_length_243_cov_28.049180:1-243 [pilon] Processing NODE_13766_length_243_cov_15.926230:1-243 [pilon] NODE_6397_length_510_cov_19.591260:1-510 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 170, Coverage: 32, minDepth: 8 [pilon] Confirmed 417 of 510 bases (81.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6397_length_510_cov_19.591260:1-510 [pilon] Processing NODE_1115_length_1432_cov_20.984744:1-1432 [pilon] NODE_11349_length_270_cov_15.348993:1-270 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 53, Coverage: 3, minDepth: 5 [pilon] Confirmed 103 of 270 bases (38.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11349_length_270_cov_15.348993:1-270 [pilon] Processing NODE_10690_length_298_cov_22.446328:1-298 [pilon] NODE_2033_length_1077_cov_54.967573:1-1077 log: [pilon] frags shovill.bam: coverage 134 [pilon] Total Reads: 1248, Coverage: 134, minDepth: 34 [pilon] Confirmed 925 of 1077 bases (85.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_2135_length_1050_cov_14.736276:1-1050 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 347, Coverage: 28, minDepth: 7 [pilon] Confirmed 836 of 1050 bases (79.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2033_length_1077_cov_54.967573:1-1077 [pilon] Finished processing NODE_2135_length_1050_cov_14.736276:1-1050 [pilon] Processing NODE_10766_length_294_cov_33.554913:1-294 [pilon] Processing NODE_14749_length_243_cov_8.106557:1-243 [pilon] NODE_7263_length_456_cov_22.307463:1-456 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 173, Coverage: 29, minDepth: 7 [pilon] Confirmed 387 of 456 bases (84.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7263_length_456_cov_22.307463:1-456 [pilon] Processing NODE_10476_length_306_cov_9.091892:1-306 [pilon] NODE_5876_length_549_cov_21.906542:1-549 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 228, Coverage: 26, minDepth: 7 [pilon] Confirmed 364 of 549 bases (66.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5876_length_549_cov_21.906542:1-549 [pilon] Processing NODE_14044_length_243_cov_13.868852:1-243 [pilon] NODE_238_length_2390_cov_8.895108:1-2390 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 463, Coverage: 25, minDepth: 6 [pilon] Confirmed 2085 of 2390 bases (87.24%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_238_length_2390_cov_8.895108:1-2390 [pilon] Processing NODE_408_length_2039_cov_25.826382:1-2039 [pilon] NODE_10091_length_321_cov_22.890000:1-321 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 106, Coverage: 13, minDepth: 5 [pilon] Confirmed 237 of 321 bases (73.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10091_length_321_cov_22.890000:1-321 [pilon] Processing NODE_5513_length_576_cov_14.360440:1-576 [pilon] NODE_14637_length_243_cov_9.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14637_length_243_cov_9.131148:1-243 [pilon] Processing NODE_992_length_1500_cov_25.879623:1-1500 [pilon] NODE_2570_length_953_cov_15.575721:1-953 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 343, Coverage: 33, minDepth: 8 [pilon] Confirmed 761 of 953 bases (79.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2570_length_953_cov_15.575721:1-953 [pilon] Processing NODE_13385_length_243_cov_19.500000:1-243 [pilon] NODE_8388_length_400_cov_25.430108:1-400 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 140, Coverage: 14, minDepth: 5 [pilon] Confirmed 250 of 400 bases (62.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8388_length_400_cov_25.430108:1-400 [pilon] Processing NODE_9272_length_354_cov_34.287554:1-354 [pilon] NODE_5095_length_611_cov_0.904082:1-611 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 131 of 611 bases (21.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5095_length_611_cov_0.904082:1-611 [pilon] Processing NODE_3332_length_810_cov_1.119013:1-810 [pilon] NODE_8583_length_389_cov_30.768657:1-389 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 199, Coverage: 28, minDepth: 7 [pilon] Confirmed 331 of 389 bases (85.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8583_length_389_cov_30.768657:1-389 [pilon] Processing NODE_13285_length_243_cov_20.327869:1-243 [pilon] NODE_1919_length_1107_cov_11.576065:1-1107 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 300, Coverage: 24, minDepth: 6 [pilon] Confirmed 1007 of 1107 bases (90.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_435_length_1987_cov_18.294212:1-1987 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 859, Coverage: 51, minDepth: 13 [pilon] Confirmed 1833 of 1987 bases (92.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_435_length_1987_cov_18.294212:1-1987 [pilon] Finished processing NODE_1919_length_1107_cov_11.576065:1-1107 [pilon] Processing NODE_9646_length_339_cov_27.004587:1-339 [pilon] Processing NODE_15244_length_129_cov_53.125000:1-129 [pilon] NODE_11049_length_282_cov_8.515528:1-282 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 36, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 282 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11049_length_282_cov_8.515528:1-282 [pilon] Processing NODE_3066_length_860_cov_1.299053:1-860 [pilon] NODE_6259_length_520_cov_28.676692:1-520 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 270, Coverage: 34, minDepth: 9 [pilon] Confirmed 410 of 520 bases (78.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6259_length_520_cov_28.676692:1-520 [pilon] Processing NODE_2404_length_990_cov_11.733026:1-990 [pilon] NODE_5747_length_560_cov_2.220957:1-560 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 315 of 560 bases (56.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5747_length_560_cov_2.220957:1-560 [pilon] Processing NODE_12008_length_246_cov_16.536000:1-246 [pilon] NODE_8046_length_416_cov_0.932203:1-416 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 416 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8046_length_416_cov_0.932203:1-416 [pilon] Processing NODE_1957_length_1096_cov_3.350769:1-1096 [pilon] NODE_2644_length_939_cov_20.477995:1-939 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 372, Coverage: 32, minDepth: 8 [pilon] Confirmed 682 of 939 bases (72.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2644_length_939_cov_20.477995:1-939 [pilon] Processing NODE_1590_length_1222_cov_18.724796:1-1222 [pilon] NODE_10525_length_303_cov_27.593407:1-303 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 85, Coverage: 8, minDepth: 5 [pilon] Confirmed 186 of 303 bases (61.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10525_length_303_cov_27.593407:1-303 [pilon] Processing NODE_6648_length_494_cov_21.967828:1-494 [pilon] NODE_9854_length_332_cov_19.298578:1-332 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 95, Coverage: 18, minDepth: 5 [pilon] Confirmed 285 of 332 bases (85.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9854_length_332_cov_19.298578:1-332 [pilon] Processing NODE_11977_length_246_cov_28.264000:1-246 [pilon] NODE_10279_length_314_cov_24.886010:1-314 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 111, Coverage: 17, minDepth: 5 [pilon] Confirmed 252 of 314 bases (80.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10279_length_314_cov_24.886010:1-314 [pilon] Processing NODE_5194_length_602_cov_19.696466:1-602 [pilon] NODE_4129_length_702_cov_1.690189:1-702 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 35, Coverage: 6, minDepth: 5 [pilon] Confirmed 366 of 702 bases (52.14%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4129_length_702_cov_1.690189:1-702 [pilon] Processing NODE_1367_length_1311_cov_5.063866:1-1311 [pilon] NODE_1115_length_1432_cov_20.984744:1-1432 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 655, Coverage: 31, minDepth: 8 [pilon] Confirmed 1131 of 1432 bases (78.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1115_length_1432_cov_20.984744:1-1432 [pilon] Processing NODE_2347_length_1001_cov_20.515909:1-1001 [pilon] NODE_11403_length_267_cov_18.006849:1-267 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 55, Coverage: 8, minDepth: 5 [pilon] Confirmed 217 of 267 bases (81.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11403_length_267_cov_18.006849:1-267 [pilon] Processing NODE_10748_length_295_cov_29.247126:1-295 [pilon] NODE_1343_length_1323_cov_15.075707:1-1323 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 430, Coverage: 27, minDepth: 7 [pilon] Confirmed 1178 of 1323 bases (89.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1343_length_1323_cov_15.075707:1-1323 [pilon] Processing NODE_1710_length_1178_cov_1.652791:1-1178 [pilon] NODE_13766_length_243_cov_15.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13766_length_243_cov_15.926230:1-243 [pilon] Processing NODE_13328_length_243_cov_20.008197:1-243 [pilon] NODE_408_length_2039_cov_25.826382:1-2039 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 1390, Coverage: 56, minDepth: 14 [pilon] Confirmed 1684 of 2039 bases (82.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_408_length_2039_cov_25.826382:1-2039 [pilon] Processing NODE_2617_length_942_cov_34.830694:1-942 [pilon] NODE_992_length_1500_cov_25.879623:1-1500 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 875, Coverage: 48, minDepth: 12 [pilon] Confirmed 1338 of 1500 bases (89.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_992_length_1500_cov_25.879623:1-1500 [pilon] Processing NODE_10114_length_321_cov_13.845000:1-321 [pilon] NODE_8464_length_396_cov_12.923636:1-396 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 73, Coverage: 12, minDepth: 5 [pilon] Confirmed 279 of 396 bases (70.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8464_length_396_cov_12.923636:1-396 [pilon] Processing NODE_15261_length_125_cov_8.000000:1-125 [pilon] NODE_14749_length_243_cov_8.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14749_length_243_cov_8.106557:1-243 [pilon] Processing NODE_12763_length_243_cov_25.434426:1-243 [pilon] NODE_10476_length_306_cov_9.091892:1-306 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 38, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10476_length_306_cov_9.091892:1-306 [pilon] Processing NODE_3072_length_859_cov_1.609756:1-859 [pilon] NODE_10766_length_294_cov_33.554913:1-294 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 131, Coverage: 10, minDepth: 5 [pilon] Confirmed 188 of 294 bases (63.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10766_length_294_cov_33.554913:1-294 [pilon] Processing NODE_10787_length_294_cov_13.566474:1-294 [pilon] NODE_10690_length_298_cov_22.446328:1-298 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 94, Coverage: 14, minDepth: 5 [pilon] Confirmed 233 of 298 bases (78.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10690_length_298_cov_22.446328:1-298 [pilon] Processing NODE_3217_length_830_cov_27.475317:1-830 [pilon] NODE_14044_length_243_cov_13.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14044_length_243_cov_13.868852:1-243 [pilon] Processing NODE_10767_length_294_cov_33.497110:1-294 [pilon] NODE_5513_length_576_cov_14.360440:1-576 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 154, Coverage: 26, minDepth: 7 [pilon] Confirmed 413 of 576 bases (71.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5513_length_576_cov_14.360440:1-576 [pilon] Processing NODE_9209_length_357_cov_18.644068:1-357 [pilon] NODE_13385_length_243_cov_19.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13385_length_243_cov_19.500000:1-243 [pilon] Processing NODE_12089_length_244_cov_15.178862:1-244 [pilon] NODE_3332_length_810_cov_1.119013:1-810 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 349 of 810 bases (43.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3332_length_810_cov_1.119013:1-810 [pilon] Processing NODE_11653_length_258_cov_13.350365:1-258 [pilon] NODE_6648_length_494_cov_21.967828:1-494 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 171, Coverage: 24, minDepth: 6 [pilon] Confirmed 369 of 494 bases (74.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6648_length_494_cov_21.967828:1-494 [pilon] Processing NODE_5997_length_541_cov_1.157143:1-541 [pilon] NODE_3066_length_860_cov_1.299053:1-860 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 30, Coverage: 4, minDepth: 5 [pilon] Confirmed 381 of 860 bases (44.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3066_length_860_cov_1.299053:1-860 [pilon] Processing NODE_12283_length_243_cov_33.622951:1-243 [pilon] NODE_9646_length_339_cov_27.004587:1-339 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 135, Coverage: 7, minDepth: 5 [pilon] Confirmed 159 of 339 bases (46.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9646_length_339_cov_27.004587:1-339 [pilon] Processing NODE_7483_length_444_cov_11.829721:1-444 [pilon] NODE_13285_length_243_cov_20.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13285_length_243_cov_20.327869:1-243 [pilon] Processing NODE_12859_length_243_cov_24.442623:1-243 [pilon] NODE_9272_length_354_cov_34.287554:1-354 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 173, Coverage: 4, minDepth: 5 [pilon] Confirmed 133 of 354 bases (37.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9272_length_354_cov_34.287554:1-354 [pilon] Processing NODE_4448_length_666_cov_14.563303:1-666 [pilon] NODE_2347_length_1001_cov_20.515909:1-1001 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 450, Coverage: 37, minDepth: 9 [pilon] Confirmed 826 of 1001 bases (82.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2347_length_1001_cov_20.515909:1-1001 [pilon] Processing NODE_10937_length_286_cov_22.606061:1-286 [pilon] NODE_2404_length_990_cov_11.733026:1-990 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 254, Coverage: 22, minDepth: 6 [pilon] Confirmed 872 of 990 bases (88.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2404_length_990_cov_11.733026:1-990 [pilon] Processing NODE_1308_length_1337_cov_10.499178:1-1337 [pilon] NODE_15244_length_129_cov_53.125000:1-129 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 129 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15244_length_129_cov_53.125000:1-129 [pilon] Processing NODE_5121_length_608_cov_23.024641:1-608 [pilon] NODE_12008_length_246_cov_16.536000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 42, Coverage: 3, minDepth: 5 [pilon] Confirmed 38 of 246 bases (15.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12008_length_246_cov_16.536000:1-246 [pilon] Processing NODE_3375_length_801_cov_10.573529:1-801 [pilon] NODE_1957_length_1096_cov_3.350769:1-1096 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 89, Coverage: 10, minDepth: 5 [pilon] Confirmed 830 of 1096 bases (75.73%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1957_length_1096_cov_3.350769:1-1096 [pilon] Processing NODE_8585_length_389_cov_23.652985:1-389 [pilon] NODE_2617_length_942_cov_34.830694:1-942 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 674, Coverage: 60, minDepth: 15 [pilon] Confirmed 840 of 942 bases (89.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2617_length_942_cov_34.830694:1-942 [pilon] Processing NODE_6400_length_510_cov_18.282776:1-510 [pilon] NODE_1590_length_1222_cov_18.724796:1-1222 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 471, Coverage: 35, minDepth: 9 [pilon] Confirmed 941 of 1222 bases (77.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1590_length_1222_cov_18.724796:1-1222 [pilon] Processing NODE_5223_length_599_cov_20.433054:1-599 [pilon] NODE_5194_length_602_cov_19.696466:1-602 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 119, Coverage: 12, minDepth: 5 [pilon] Confirmed 422 of 602 bases (70.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5194_length_602_cov_19.696466:1-602 [pilon] Processing NODE_2300_length_1011_cov_15.152809:1-1011 [pilon] NODE_10114_length_321_cov_13.845000:1-321 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 70, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 321 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10114_length_321_cov_13.845000:1-321 [pilon] Processing NODE_9440_length_348_cov_21.784141:1-348 [pilon] NODE_1367_length_1311_cov_5.063866:1-1311 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 146, Coverage: 14, minDepth: 5 [pilon] Confirmed 1134 of 1311 bases (86.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1367_length_1311_cov_5.063866:1-1311 [pilon] Processing NODE_230_length_2408_cov_1.828596:1-2408 [pilon] NODE_11977_length_246_cov_28.264000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 73, Coverage: 3, minDepth: 5 [pilon] Confirmed 37 of 246 bases (15.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11977_length_246_cov_28.264000:1-246 [pilon] Processing NODE_24_length_4809_cov_23.779437:1-4809 [pilon] NODE_10748_length_295_cov_29.247126:1-295 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 107, Coverage: 6, minDepth: 5 [pilon] Confirmed 193 of 295 bases (65.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10748_length_295_cov_29.247126:1-295 [pilon] Processing NODE_12316_length_243_cov_32.860656:1-243 [pilon] NODE_13328_length_243_cov_20.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13328_length_243_cov_20.008197:1-243 [pilon] Processing NODE_767_length_1644_cov_20.049245:1-1644 [pilon] NODE_1710_length_1178_cov_1.652791:1-1178 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 54, Coverage: 6, minDepth: 5 [pilon] Confirmed 786 of 1178 bases (66.72%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1710_length_1178_cov_1.652791:1-1178 [pilon] Processing NODE_10291_length_314_cov_8.699482:1-314 [pilon] NODE_15261_length_125_cov_8.000000:1-125 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 125 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15261_length_125_cov_8.000000:1-125 [pilon] Processing NODE_11740_length_255_cov_20.208955:1-255 [pilon] NODE_12763_length_243_cov_25.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12763_length_243_cov_25.434426:1-243 [pilon] Processing NODE_272_length_2292_cov_12.960387:1-2292 [pilon] NODE_3072_length_859_cov_1.609756:1-859 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 33, Coverage: 5, minDepth: 5 [pilon] Confirmed 309 of 859 bases (35.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3072_length_859_cov_1.609756:1-859 [pilon] Processing NODE_6586_length_498_cov_2.320955:1-498 [pilon] NODE_10787_length_294_cov_13.566474:1-294 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 56, Coverage: 3, minDepth: 5 [pilon] Confirmed 97 of 294 bases (32.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10787_length_294_cov_13.566474:1-294 [pilon] Processing NODE_14219_length_243_cov_12.442623:1-243 [pilon] NODE_5997_length_541_cov_1.157143:1-541 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 17, Coverage: 3, minDepth: 5 [pilon] Confirmed 194 of 541 bases (35.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5997_length_541_cov_1.157143:1-541 [pilon] Processing NODE_9797_length_334_cov_17.065728:1-334 [pilon] NODE_10937_length_286_cov_22.606061:1-286 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 67, Coverage: 7, minDepth: 5 [pilon] Confirmed 208 of 286 bases (72.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10937_length_286_cov_22.606061:1-286 [pilon] Processing NODE_3448_length_792_cov_0.789866:1-792 [pilon] NODE_10767_length_294_cov_33.497110:1-294 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 101, Coverage: 7, minDepth: 5 [pilon] Confirmed 178 of 294 bases (60.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10767_length_294_cov_33.497110:1-294 [pilon] Processing NODE_12406_length_243_cov_30.811475:1-243 [pilon] NODE_3217_length_830_cov_27.475317:1-830 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 447, Coverage: 43, minDepth: 11 [pilon] Confirmed 742 of 830 bases (89.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3217_length_830_cov_27.475317:1-830 [pilon] Processing NODE_12058_length_245_cov_22.201613:1-245 [pilon] NODE_9209_length_357_cov_18.644068:1-357 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 102, Coverage: 7, minDepth: 5 [pilon] Confirmed 211 of 357 bases (59.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9209_length_357_cov_18.644068:1-357 [pilon] Processing NODE_4571_length_656_cov_3.491589:1-656 [pilon] NODE_11653_length_258_cov_13.350365:1-258 log: [pilon] NODE_7483_length_444_cov_11.829721:1-444 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 96, Coverage: 10, minDepth: 5 [pilon] Confirmed 276 of 444 bases (62.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7483_length_444_cov_11.829721:1-444 [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 39, Coverage: 3, minDepth: 5 [pilon] Confirmed 21 of 258 bases (8.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11653_length_258_cov_13.350365:1-258 [pilon] Processing NODE_12660_length_243_cov_26.721311:1-243 [pilon] Processing NODE_4335_length_677_cov_25.388489:1-677 [pilon] NODE_6400_length_510_cov_18.282776:1-510 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 168, Coverage: 22, minDepth: 6 [pilon] Confirmed 299 of 510 bases (58.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6400_length_510_cov_18.282776:1-510 [pilon] Processing NODE_15118_length_212_cov_136.835165:1-212 [pilon] NODE_1308_length_1337_cov_10.499178:1-1337 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 341, Coverage: 21, minDepth: 5 [pilon] Confirmed 1241 of 1337 bases (92.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1308_length_1337_cov_10.499178:1-1337 [pilon] Processing NODE_11514_length_263_cov_23.070423:1-263 [pilon] NODE_12283_length_243_cov_33.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12283_length_243_cov_33.622951:1-243 [pilon] Processing NODE_1123_length_1428_cov_34.377965:1-1428 [pilon] NODE_4448_length_666_cov_14.563303:1-666 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 226, Coverage: 32, minDepth: 8 [pilon] Confirmed 555 of 666 bases (83.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4448_length_666_cov_14.563303:1-666 [pilon] Processing NODE_5199_length_602_cov_1.706861:1-602 [pilon] NODE_12859_length_243_cov_24.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12859_length_243_cov_24.442623:1-243 [pilon] Processing NODE_14751_length_243_cov_8.106557:1-243 [pilon] NODE_12089_length_244_cov_15.178862:1-244 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 48, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12089_length_244_cov_15.178862:1-244 [pilon] Processing NODE_5944_length_545_cov_3.995283:1-545 [pilon] NODE_5121_length_608_cov_23.024641:1-608 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 270, Coverage: 31, minDepth: 8 [pilon] Confirmed 485 of 608 bases (79.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5121_length_608_cov_23.024641:1-608 [pilon] Processing NODE_5783_length_557_cov_1.300459:1-557 [pilon] NODE_9440_length_348_cov_21.784141:1-348 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 108, Coverage: 14, minDepth: 5 [pilon] Confirmed 261 of 348 bases (75.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9440_length_348_cov_21.784141:1-348 [pilon] Processing NODE_9571_length_342_cov_30.312217:1-342 [pilon] NODE_8585_length_389_cov_23.652985:1-389 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 141, Coverage: 13, minDepth: 5 [pilon] Confirmed 239 of 389 bases (61.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8585_length_389_cov_23.652985:1-389 [pilon] Processing NODE_9607_length_342_cov_8.144796:1-342 [pilon] NODE_3375_length_801_cov_10.573529:1-801 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 156, Coverage: 19, minDepth: 5 [pilon] Confirmed 550 of 801 bases (68.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3375_length_801_cov_10.573529:1-801 [pilon] Processing NODE_9614_length_341_cov_50.431818:1-341 [pilon] NODE_2300_length_1011_cov_15.152809:1-1011 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 344, Coverage: 29, minDepth: 7 [pilon] Confirmed 931 of 1011 bases (92.09%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2300_length_1011_cov_15.152809:1-1011 [pilon] Processing NODE_2591_length_947_cov_12.368039:1-947 [pilon] NODE_5223_length_599_cov_20.433054:1-599 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 262, Coverage: 32, minDepth: 8 [pilon] Confirmed 423 of 599 bases (70.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5223_length_599_cov_20.433054:1-599 [pilon] Processing NODE_5116_length_608_cov_36.195072:1-608 [pilon] NODE_230_length_2408_cov_1.828596:1-2408 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 136, Coverage: 7, minDepth: 5 [pilon] Confirmed 1708 of 2408 bases (70.93%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_230_length_2408_cov_1.828596:1-2408 [pilon] Processing NODE_498_length_1912_cov_8.212172:1-1912 [pilon] NODE_12316_length_243_cov_32.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12316_length_243_cov_32.860656:1-243 [pilon] Processing NODE_2784_length_911_cov_29.126582:1-911 [pilon] NODE_24_length_4809_cov_23.779437:1-4809 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 2935, Coverage: 74, minDepth: 19 [pilon] Confirmed 3555 of 4809 bases (73.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_24_length_4809_cov_23.779437:1-4809 [pilon] Processing NODE_12654_length_243_cov_26.819672:1-243 [pilon] NODE_767_length_1644_cov_20.049245:1-1644 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 688, Coverage: 35, minDepth: 9 [pilon] Confirmed 1303 of 1644 bases (79.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_767_length_1644_cov_20.049245:1-1644 [pilon] Processing NODE_12027_length_246_cov_11.200000:1-246 [pilon] NODE_6586_length_498_cov_2.320955:1-498 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 29, Coverage: 6, minDepth: 5 [pilon] Confirmed 264 of 498 bases (53.01%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6586_length_498_cov_2.320955:1-498 [pilon] Processing NODE_1446_length_1282_cov_0.783807:1-1282 [pilon] NODE_272_length_2292_cov_12.960387:1-2292 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 669, Coverage: 31, minDepth: 8 [pilon] Confirmed 1863 of 2292 bases (81.28%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_272_length_2292_cov_12.960387:1-2292 [pilon] Processing NODE_1310_length_1336_cov_13.589300:1-1336 [pilon] NODE_9797_length_334_cov_17.065728:1-334 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 106, Coverage: 9, minDepth: 5 [pilon] Confirmed 274 of 334 bases (82.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9797_length_334_cov_17.065728:1-334 [pilon] Processing NODE_12088_length_244_cov_15.731707:1-244 [pilon] NODE_11740_length_255_cov_20.208955:1-255 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 59, Coverage: 5, minDepth: 5 [pilon] Confirmed 135 of 255 bases (52.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11740_length_255_cov_20.208955:1-255 [pilon] Processing NODE_4075_length_708_cov_12.632027:1-708 [pilon] NODE_10291_length_314_cov_8.699482:1-314 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 129 of 314 bases (41.08%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10291_length_314_cov_8.699482:1-314 [pilon] Processing NODE_12274_length_243_cov_33.942623:1-243 [pilon] NODE_12406_length_243_cov_30.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12406_length_243_cov_30.811475:1-243 [pilon] Processing NODE_8025_length_417_cov_18.000000:1-417 [pilon] NODE_14219_length_243_cov_12.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14219_length_243_cov_12.442623:1-243 [pilon] Processing NODE_9751_length_336_cov_16.260465:1-336 [pilon] NODE_3448_length_792_cov_0.789866:1-792 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 17, Coverage: 3, minDepth: 5 [pilon] Confirmed 117 of 792 bases (14.77%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3448_length_792_cov_0.789866:1-792 [pilon] Processing NODE_9261_length_355_cov_16.277778:1-355 [pilon] NODE_5199_length_602_cov_1.706861:1-602 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 261 of 602 bases (43.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5199_length_602_cov_1.706861:1-602 [pilon] Processing NODE_10209_length_316_cov_61.369231:1-316 [pilon] NODE_12058_length_245_cov_22.201613:1-245 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 53, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 245 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12058_length_245_cov_22.201613:1-245 [pilon] Processing NODE_6020_length_539_cov_21.612440:1-539 [pilon] NODE_15118_length_212_cov_136.835165:1-212 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 298, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 212 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15118_length_212_cov_136.835165:1-212 [pilon] Processing NODE_14117_length_243_cov_13.368852:1-243 [pilon] NODE_1123_length_1428_cov_34.377965:1-1428 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 1016, Coverage: 80, minDepth: 20 [pilon] Confirmed 1231 of 1428 bases (86.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1123_length_1428_cov_34.377965:1-1428 [pilon] Processing NODE_5808_length_555_cov_1.069124:1-555 [pilon] NODE_4571_length_656_cov_3.491589:1-656 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 47, Coverage: 9, minDepth: 5 [pilon] Confirmed 433 of 656 bases (66.01%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4571_length_656_cov_3.491589:1-656 [pilon] Processing NODE_8406_length_399_cov_20.690647:1-399 [pilon] NODE_11514_length_263_cov_23.070423:1-263 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 80, Coverage: 7, minDepth: 5 [pilon] Confirmed 179 of 263 bases (68.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11514_length_263_cov_23.070423:1-263 [pilon] Processing NODE_12835_length_243_cov_24.713115:1-243 [pilon] NODE_9614_length_341_cov_50.431818:1-341 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 263, Coverage: 31, minDepth: 8 [pilon] Confirmed 315 of 341 bases (92.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9614_length_341_cov_50.431818:1-341 [pilon] Processing NODE_4175_length_696_cov_21.617391:1-696 [pilon] NODE_4335_length_677_cov_25.388489:1-677 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 322, Coverage: 38, minDepth: 10 [pilon] Confirmed 543 of 677 bases (80.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4335_length_677_cov_25.388489:1-677 [pilon] Processing NODE_4779_length_637_cov_1.459302:1-637 [pilon] NODE_12660_length_243_cov_26.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12660_length_243_cov_26.721311:1-243 [pilon] Processing NODE_4086_length_707_cov_0.684300:1-707 [pilon] NODE_5944_length_545_cov_3.995283:1-545 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 50, Coverage: 12, minDepth: 5 [pilon] Confirmed 468 of 545 bases (85.87%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5944_length_545_cov_3.995283:1-545 [pilon] Processing NODE_5552_length_574_cov_1.419426:1-574 [pilon] NODE_14751_length_243_cov_8.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14751_length_243_cov_8.106557:1-243 [pilon] Processing NODE_1829_length_1135_cov_12.351085:1-1135 [pilon] NODE_9607_length_342_cov_8.144796:1-342 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 48, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 342 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9607_length_342_cov_8.144796:1-342 [pilon] Processing NODE_2769_length_914_cov_17.276166:1-914 [pilon] NODE_2591_length_947_cov_12.368039:1-947 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 285, Coverage: 19, minDepth: 5 [pilon] Confirmed 720 of 947 bases (76.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2591_length_947_cov_12.368039:1-947 [pilon] Processing NODE_3374_length_801_cov_11.848529:1-801 [pilon] NODE_9571_length_342_cov_30.312217:1-342 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 117, Coverage: 5, minDepth: 5 [pilon] Confirmed 146 of 342 bases (42.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9571_length_342_cov_30.312217:1-342 [pilon] Processing NODE_10633_length_300_cov_16.245810:1-300 [pilon] NODE_5783_length_557_cov_1.300459:1-557 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 14 of 557 bases (2.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5783_length_557_cov_1.300459:1-557 [pilon] Processing NODE_11177_length_276_cov_23.464516:1-276 [pilon] NODE_5116_length_608_cov_36.195072:1-608 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 430, Coverage: 65, minDepth: 16 [pilon] Confirmed 468 of 608 bases (76.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5116_length_608_cov_36.195072:1-608 [pilon] Processing NODE_3464_length_789_cov_25.935629:1-789 [pilon] NODE_4075_length_708_cov_12.632027:1-708 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 186, Coverage: 24, minDepth: 6 [pilon] Confirmed 564 of 708 bases (79.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4075_length_708_cov_12.632027:1-708 [pilon] Processing NODE_3396_length_798_cov_27.454948:1-798 [pilon] NODE_12654_length_243_cov_26.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12654_length_243_cov_26.819672:1-243 [pilon] Processing NODE_12110_length_243_cov_45.893443:1-243 [pilon] NODE_12027_length_246_cov_11.200000:1-246 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12027_length_246_cov_11.200000:1-246 [pilon] Processing NODE_4774_length_637_cov_19.343023:1-637 [pilon] NODE_2784_length_911_cov_29.126582:1-911 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 540, Coverage: 64, minDepth: 16 [pilon] Confirmed 686 of 911 bases (75.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2784_length_911_cov_29.126582:1-911 [pilon] Processing NODE_13004_length_243_cov_22.852459:1-243 [pilon] NODE_9261_length_355_cov_16.277778:1-355 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 99, Coverage: 11, minDepth: 5 [pilon] Confirmed 285 of 355 bases (80.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9261_length_355_cov_16.277778:1-355 [pilon] Processing NODE_13376_length_243_cov_19.581967:1-243 [pilon] NODE_9751_length_336_cov_16.260465:1-336 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 73, Coverage: 9, minDepth: 5 [pilon] Confirmed 212 of 336 bases (63.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9751_length_336_cov_16.260465:1-336 [pilon] Processing NODE_6250_length_521_cov_2.562500:1-521 [pilon] NODE_498_length_1912_cov_8.212172:1-1912 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 463, Coverage: 28, minDepth: 7 [pilon] Confirmed 1370 of 1912 bases (71.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_498_length_1912_cov_8.212172:1-1912 [pilon] Processing NODE_332_length_2151_cov_33.338916:1-2151 [pilon] NODE_12088_length_244_cov_15.731707:1-244 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_1446_length_1282_cov_0.783807:1-1282 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 39, Coverage: 3, minDepth: 5 [pilon] Confirmed 228 of 1282 bases (17.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12088_length_244_cov_15.731707:1-244 [pilon] Finished processing NODE_1446_length_1282_cov_0.783807:1-1282 [pilon] Processing NODE_3437_length_793_cov_14.855655:1-793 [pilon] Processing NODE_11030_length_282_cov_18.633540:1-282 [pilon] NODE_8025_length_417_cov_18.000000:1-417 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 116, Coverage: 15, minDepth: 5 [pilon] Confirmed 312 of 417 bases (74.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8025_length_417_cov_18.000000:1-417 [pilon] Processing NODE_4306_length_681_cov_0.796429:1-681 [pilon] NODE_1310_length_1336_cov_13.589300:1-1336 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 438, Coverage: 30, minDepth: 8 [pilon] Confirmed 1027 of 1336 bases (76.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1310_length_1336_cov_13.589300:1-1336 [pilon] Processing NODE_8925_length_369_cov_35.951613:1-369 [pilon] NODE_12274_length_243_cov_33.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12274_length_243_cov_33.942623:1-243 [pilon] Processing NODE_4502_length_662_cov_1.609982:1-662 [pilon] NODE_3374_length_801_cov_11.848529:1-801 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 194, Coverage: 8, minDepth: 5 [pilon] Confirmed 596 of 801 bases (74.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3374_length_801_cov_11.848529:1-801 [pilon] Processing NODE_1100_length_1440_cov_44.423048:1-1440 [pilon] NODE_6020_length_539_cov_21.612440:1-539 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 247, Coverage: 12, minDepth: 5 [pilon] Confirmed 367 of 539 bases (68.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6020_length_539_cov_21.612440:1-539 [pilon] Processing NODE_713_length_1695_cov_16.915502:1-1695 [pilon] NODE_14117_length_243_cov_13.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14117_length_243_cov_13.368852:1-243 [pilon] Processing NODE_13570_length_243_cov_17.754098:1-243 [pilon] NODE_10209_length_316_cov_61.369231:1-316 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 278, Coverage: 34, minDepth: 9 [pilon] Confirmed 277 of 316 bases (87.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10209_length_316_cov_61.369231:1-316 [pilon] Processing NODE_9895_length_330_cov_19.014354:1-330 [pilon] NODE_3464_length_789_cov_25.935629:1-789 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 414, Coverage: 52, minDepth: 13 [pilon] Confirmed 555 of 789 bases (70.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3464_length_789_cov_25.935629:1-789 [pilon] Processing NODE_1499_length_1259_cov_2.731986:1-1259 [pilon] NODE_12835_length_243_cov_24.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12835_length_243_cov_24.713115:1-243 [pilon] Processing NODE_14300_length_243_cov_11.852459:1-243 [pilon] NODE_4086_length_707_cov_0.684300:1-707 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 707 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4086_length_707_cov_0.684300:1-707 [pilon] Processing NODE_6033_length_538_cov_1.961631:1-538 [pilon] NODE_8406_length_399_cov_20.690647:1-399 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 118, Coverage: 15, minDepth: 5 [pilon] Confirmed 254 of 399 bases (63.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8406_length_399_cov_20.690647:1-399 [pilon] Processing NODE_11771_length_254_cov_33.992481:1-254 [pilon] NODE_5808_length_555_cov_1.069124:1-555 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 191 of 555 bases (34.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5808_length_555_cov_1.069124:1-555 [pilon] Processing NODE_11893_length_249_cov_21.820312:1-249 [pilon] NODE_5552_length_574_cov_1.419426:1-574 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 135 of 574 bases (23.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5552_length_574_cov_1.419426:1-574 [pilon] Processing NODE_9553_length_344_cov_13.264574:1-344 [pilon] NODE_4779_length_637_cov_1.459302:1-637 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 26, Coverage: 4, minDepth: 5 [pilon] Confirmed 364 of 637 bases (57.14%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4779_length_637_cov_1.459302:1-637 [pilon] Processing NODE_11463_length_264_cov_24.979021:1-264 [pilon] NODE_4175_length_696_cov_21.617391:1-696 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 277, Coverage: 33, minDepth: 8 [pilon] Confirmed 557 of 696 bases (80.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4175_length_696_cov_21.617391:1-696 [pilon] Processing NODE_12848_length_243_cov_24.540984:1-243 [pilon] NODE_3396_length_798_cov_27.454948:1-798 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 453, Coverage: 39, minDepth: 10 [pilon] Confirmed 600 of 798 bases (75.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3396_length_798_cov_27.454948:1-798 [pilon] Processing NODE_2614_length_943_cov_1.350365:1-943 [pilon] NODE_10633_length_300_cov_16.245810:1-300 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 68, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10633_length_300_cov_16.245810:1-300 [pilon] Processing NODE_1372_length_1309_cov_3.411616:1-1309 [pilon] NODE_13376_length_243_cov_19.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13376_length_243_cov_19.581967:1-243 [pilon] Processing NODE_13828_length_243_cov_15.401639:1-243 [pilon] NODE_1829_length_1135_cov_12.351085:1-1135 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 306, Coverage: 27, minDepth: 7 [pilon] Confirmed 928 of 1135 bases (81.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1829_length_1135_cov_12.351085:1-1135 [pilon] Processing NODE_12943_length_243_cov_23.475410:1-243 [pilon] NODE_2769_length_914_cov_17.276166:1-914 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 292, Coverage: 30, minDepth: 8 [pilon] Confirmed 666 of 914 bases (72.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2769_length_914_cov_17.276166:1-914 [pilon] Processing NODE_2079_length_1065_cov_1.462924:1-1065 [pilon] NODE_11177_length_276_cov_23.464516:1-276 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 81, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11177_length_276_cov_23.464516:1-276 [pilon] Processing NODE_6985_length_473_cov_0.670455:1-473 [pilon] NODE_12110_length_243_cov_45.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12110_length_243_cov_45.893443:1-243 [pilon] Processing NODE_6758_length_486_cov_1.479452:1-486 [pilon] NODE_4774_length_637_cov_19.343023:1-637 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 241, Coverage: 25, minDepth: 6 [pilon] Confirmed 470 of 637 bases (73.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4774_length_637_cov_19.343023:1-637 [pilon] Processing NODE_13892_length_243_cov_14.975410:1-243 [pilon] NODE_6250_length_521_cov_2.562500:1-521 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 37, Coverage: 8, minDepth: 5 [pilon] Confirmed 418 of 521 bases (80.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6250_length_521_cov_2.562500:1-521 [pilon] Processing NODE_10302_length_313_cov_6.744792:1-313 [pilon] NODE_13004_length_243_cov_22.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13004_length_243_cov_22.852459:1-243 [pilon] Processing NODE_8476_length_395_cov_26.354015:1-395 [pilon] NODE_13570_length_243_cov_17.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13570_length_243_cov_17.754098:1-243 [pilon] Processing NODE_8513_length_393_cov_17.672794:1-393 [pilon] NODE_11030_length_282_cov_18.633540:1-282 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 76, Coverage: 6, minDepth: 5 [pilon] Confirmed 170 of 282 bases (60.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11030_length_282_cov_18.633540:1-282 [pilon] Processing NODE_9312_length_354_cov_9.150215:1-354 [pilon] NODE_3437_length_793_cov_14.855655:1-793 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 228, Coverage: 29, minDepth: 7 [pilon] Confirmed 601 of 793 bases (75.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3437_length_793_cov_14.855655:1-793 [pilon] Processing NODE_3136_length_845_cov_1.715470:1-845 [pilon] NODE_1499_length_1259_cov_2.731986:1-1259 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 105, Coverage: 10, minDepth: 5 [pilon] Confirmed 1030 of 1259 bases (81.81%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1499_length_1259_cov_2.731986:1-1259 [pilon] Processing NODE_8327_length_403_cov_12.531915:1-403 [pilon] NODE_8925_length_369_cov_35.951613:1-369 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 191, Coverage: 31, minDepth: 8 [pilon] Confirmed 329 of 369 bases (89.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8925_length_369_cov_35.951613:1-369 [pilon] Processing NODE_14633_length_243_cov_9.172131:1-243 [pilon] NODE_4306_length_681_cov_0.796429:1-681 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 17, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 681 bases (19.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4306_length_681_cov_0.796429:1-681 [pilon] Processing NODE_6148_length_528_cov_20.022113:1-528 [pilon] NODE_4502_length_662_cov_1.609982:1-662 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 394 of 662 bases (59.52%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4502_length_662_cov_1.609982:1-662 [pilon] Processing NODE_15135_length_199_cov_8.256410:1-199 [pilon] NODE_332_length_2151_cov_33.338916:1-2151 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 1786, Coverage: 69, minDepth: 17 [pilon] Confirmed 1895 of 2151 bases (88.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_332_length_2151_cov_33.338916:1-2151 [pilon] Processing NODE_9285_length_354_cov_20.613734:1-354 [pilon] NODE_13828_length_243_cov_15.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13828_length_243_cov_15.401639:1-243 [pilon] Processing NODE_13962_length_243_cov_14.442623:1-243 [pilon] NODE_9895_length_330_cov_19.014354:1-330 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 86, Coverage: 13, minDepth: 5 [pilon] Confirmed 293 of 330 bases (88.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9895_length_330_cov_19.014354:1-330 [pilon] Processing NODE_1289_length_1345_cov_16.355392:1-1345 [pilon] NODE_6985_length_473_cov_0.670455:1-473 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 15 of 473 bases (3.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6985_length_473_cov_0.670455:1-473 [pilon] Processing NODE_4948_length_623_cov_0.621514:1-623 [pilon] NODE_14300_length_243_cov_11.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14300_length_243_cov_11.852459:1-243 [pilon] NODE_1100_length_1440_cov_44.423048:1-1440 log: [pilon] frags shovill.bam: coverage 104 [pilon] Total Reads: 1323, Coverage: 104, minDepth: 26 [pilon] Confirmed 1365 of 1440 bases (94.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_2017_length_1082_cov_23.770031:1-1082 [pilon] Finished processing NODE_1100_length_1440_cov_44.423048:1-1440 [pilon] Processing NODE_11412_length_267_cov_15.157534:1-267 [pilon] NODE_6033_length_538_cov_1.961631:1-538 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 36, Coverage: 8, minDepth: 5 [pilon] Confirmed 415 of 538 bases (77.14%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6033_length_538_cov_1.961631:1-538 [pilon] Processing NODE_13877_length_243_cov_15.073770:1-243 [pilon] NODE_713_length_1695_cov_16.915502:1-1695 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 657, Coverage: 36, minDepth: 9 [pilon] Confirmed 1444 of 1695 bases (85.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_713_length_1695_cov_16.915502:1-1695 [pilon] Processing NODE_7377_length_450_cov_0.708207:1-450 [pilon] NODE_11463_length_264_cov_24.979021:1-264 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 76, Coverage: 7, minDepth: 5 [pilon] Confirmed 179 of 264 bases (67.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11463_length_264_cov_24.979021:1-264 [pilon] Processing NODE_12570_length_243_cov_28.016393:1-243 [pilon] NODE_11771_length_254_cov_33.992481:1-254 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 94, Coverage: 10, minDepth: 5 [pilon] Confirmed 223 of 254 bases (87.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11771_length_254_cov_33.992481:1-254 [pilon] Processing NODE_14403_length_243_cov_11.049180:1-243 [pilon] NODE_2614_length_943_cov_1.350365:1-943 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 39, Coverage: 5, minDepth: 5 [pilon] Confirmed 646 of 943 bases (68.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2614_length_943_cov_1.350365:1-943 [pilon] Processing NODE_11092_length_279_cov_31.582278:1-279 [pilon] NODE_9553_length_344_cov_13.264574:1-344 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 344 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9553_length_344_cov_13.264574:1-344 [pilon] Processing NODE_12757_length_243_cov_25.483607:1-243 [pilon] NODE_12848_length_243_cov_24.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12848_length_243_cov_24.540984:1-243 [pilon] Processing NODE_5465_length_579_cov_57.574236:1-579 [pilon] NODE_11893_length_249_cov_21.820312:1-249 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 50, Coverage: 5, minDepth: 5 [pilon] Confirmed 133 of 249 bases (53.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11893_length_249_cov_21.820312:1-249 [pilon] Processing NODE_795_length_1629_cov_2.842838:1-1629 [pilon] NODE_12943_length_243_cov_23.475410:1-243 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 68, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12943_length_243_cov_23.475410:1-243 [pilon] Processing NODE_4715_length_642_cov_16.092131:1-642 [pilon] NODE_1372_length_1309_cov_3.411616:1-1309 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 104, Coverage: 10, minDepth: 5 [pilon] Confirmed 1065 of 1309 bases (81.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1372_length_1309_cov_3.411616:1-1309 [pilon] Processing NODE_5841_length_552_cov_20.310905:1-552 [pilon] NODE_8513_length_393_cov_17.672794:1-393 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 99, Coverage: 10, minDepth: 5 [pilon] Confirmed 211 of 393 bases (53.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8513_length_393_cov_17.672794:1-393 [pilon] Processing NODE_5568_length_573_cov_9.289823:1-573 [pilon] NODE_2079_length_1065_cov_1.462924:1-1065 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 42, Coverage: 5, minDepth: 5 [pilon] Confirmed 364 of 1065 bases (34.18%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2079_length_1065_cov_1.462924:1-1065 [pilon] Processing NODE_14071_length_243_cov_13.663934:1-243 [pilon] NODE_8327_length_403_cov_12.531915:1-403 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 76, Coverage: 7, minDepth: 5 [pilon] Confirmed 255 of 403 bases (63.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8327_length_403_cov_12.531915:1-403 [pilon] Processing NODE_1990_length_1089_cov_7.121901:1-1089 [pilon] NODE_6758_length_486_cov_1.479452:1-486 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 15, Coverage: 4, minDepth: 5 [pilon] Confirmed 152 of 486 bases (31.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6758_length_486_cov_1.479452:1-486 [pilon] Processing NODE_1436_length_1286_cov_6.000858:1-1286 [pilon] NODE_13892_length_243_cov_14.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13892_length_243_cov_14.975410:1-243 [pilon] Processing NODE_6976_length_473_cov_16.852273:1-473 [pilon] NODE_10302_length_313_cov_6.744792:1-313 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 50, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 313 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10302_length_313_cov_6.744792:1-313 [pilon] Processing NODE_15121_length_208_cov_5.436782:1-208 [pilon] NODE_13962_length_243_cov_14.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13962_length_243_cov_14.442623:1-243 [pilon] Processing NODE_903_length_1555_cov_23.447001:1-1555 [pilon] NODE_8476_length_395_cov_26.354015:1-395 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 158, Coverage: 16, minDepth: 5 [pilon] Confirmed 264 of 395 bases (66.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8476_length_395_cov_26.354015:1-395 [pilon] NODE_4948_length_623_cov_0.621514:1-623 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 623 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_1324_length_1332_cov_2.241949:1-1332 [pilon] Finished processing NODE_4948_length_623_cov_0.621514:1-623 [pilon] Processing NODE_2187_length_1037_cov_26.323144:1-1037 [pilon] NODE_9312_length_354_cov_9.150215:1-354 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 63, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 354 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9312_length_354_cov_9.150215:1-354 [pilon] Processing NODE_8010_length_418_cov_0.946128:1-418 [pilon] NODE_3136_length_845_cov_1.715470:1-845 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 42, Coverage: 6, minDepth: 5 [pilon] Confirmed 453 of 845 bases (53.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3136_length_845_cov_1.715470:1-845 [pilon] Processing NODE_3226_length_829_cov_30.533898:1-829 [pilon] NODE_6148_length_528_cov_20.022113:1-528 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 185, Coverage: 31, minDepth: 8 [pilon] Confirmed 392 of 528 bases (74.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6148_length_528_cov_20.022113:1-528 [pilon] Processing NODE_2097_length_1060_cov_25.597444:1-1060 [pilon] NODE_14633_length_243_cov_9.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14633_length_243_cov_9.172131:1-243 [pilon] Processing NODE_442_length_1977_cov_26.636853:1-1977 [pilon] NODE_15135_length_199_cov_8.256410:1-199 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 199 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15135_length_199_cov_8.256410:1-199 [pilon] Processing NODE_4415_length_670_cov_3.914390:1-670 [pilon] NODE_9285_length_354_cov_20.613734:1-354 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 106, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 354 bases (36.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9285_length_354_cov_20.613734:1-354 [pilon] Processing NODE_11462_length_264_cov_25.006993:1-264 [pilon] NODE_13877_length_243_cov_15.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13877_length_243_cov_15.073770:1-243 [pilon] Processing NODE_5757_length_559_cov_7.840183:1-559 [pilon] NODE_12757_length_243_cov_25.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12757_length_243_cov_25.483607:1-243 [pilon] Processing NODE_3096_length_854_cov_2.848568:1-854 [pilon] NODE_11412_length_267_cov_15.157534:1-267 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 58, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11412_length_267_cov_15.157534:1-267 [pilon] Processing NODE_11741_length_255_cov_19.932836:1-255 [pilon] NODE_5568_length_573_cov_9.289823:1-573 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 109, Coverage: 8, minDepth: 5 [pilon] Confirmed 381 of 573 bases (66.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5568_length_573_cov_9.289823:1-573 [pilon] Processing NODE_2052_length_1071_cov_23.478947:1-1071 [pilon] NODE_2017_length_1082_cov_23.770031:1-1082 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 560, Coverage: 54, minDepth: 14 [pilon] Confirmed 960 of 1082 bases (88.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2017_length_1082_cov_23.770031:1-1082 [pilon] Processing NODE_9965_length_327_cov_18.898058:1-327 [pilon] NODE_7377_length_450_cov_0.708207:1-450 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 7, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 450 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7377_length_450_cov_0.708207:1-450 [pilon] Processing NODE_5870_length_550_cov_1.769231:1-550 [pilon] NODE_11092_length_279_cov_31.582278:1-279 log: [pilon] NODE_12570_length_243_cov_28.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 83, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12570_length_243_cov_28.016393:1-243 [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 98, Coverage: 8, minDepth: 5 [pilon] Confirmed 205 of 279 bases (73.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11092_length_279_cov_31.582278:1-279 [pilon] Processing NODE_14011_length_243_cov_14.131148:1-243 [pilon] Processing NODE_12867_length_243_cov_24.336066:1-243 [pilon] NODE_1289_length_1345_cov_16.355392:1-1345 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 464, Coverage: 41, minDepth: 10 [pilon] Confirmed 1057 of 1345 bases (78.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1289_length_1345_cov_16.355392:1-1345 [pilon] Processing NODE_12637_length_243_cov_27.040984:1-243 [pilon] NODE_14403_length_243_cov_11.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14403_length_243_cov_11.049180:1-243 [pilon] Processing NODE_10031_length_324_cov_17.241379:1-324 [pilon] NODE_795_length_1629_cov_2.842838:1-1629 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 123, Coverage: 9, minDepth: 5 [pilon] Confirmed 1169 of 1629 bases (71.76%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_795_length_1629_cov_2.842838:1-1629 [pilon] Processing NODE_6626_length_495_cov_24.604278:1-495 [pilon] NODE_5465_length_579_cov_57.574236:1-579 log: [pilon] frags shovill.bam: coverage 96 [pilon] Total Reads: 604, Coverage: 96, minDepth: 24 [pilon] Confirmed 501 of 579 bases (86.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5465_length_579_cov_57.574236:1-579 [pilon] NODE_1990_length_1089_cov_7.121901:1-1089 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 180, Coverage: 15, minDepth: 5 [pilon] Confirmed 1027 of 1089 bases (94.31%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1990_length_1089_cov_7.121901:1-1089 [pilon] Processing NODE_2165_length_1042_cov_1.636265:1-1042 [pilon] Processing NODE_9655_length_339_cov_21.614679:1-339 [pilon] NODE_4715_length_642_cov_16.092131:1-642 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 208, Coverage: 29, minDepth: 7 [pilon] Confirmed 515 of 642 bases (80.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4715_length_642_cov_16.092131:1-642 [pilon] Processing NODE_1900_length_1112_cov_45.384460:1-1112 [pilon] NODE_14071_length_243_cov_13.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14071_length_243_cov_13.663934:1-243 [pilon] Processing NODE_11899_length_249_cov_19.390625:1-249 [pilon] NODE_2187_length_1037_cov_26.323144:1-1037 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 554, Coverage: 55, minDepth: 14 [pilon] Confirmed 872 of 1037 bases (84.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2187_length_1037_cov_26.323144:1-1037 [pilon] Processing NODE_13780_length_243_cov_15.819672:1-243 [pilon] NODE_5841_length_552_cov_20.310905:1-552 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 197, Coverage: 27, minDepth: 7 [pilon] Confirmed 371 of 552 bases (67.21%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5841_length_552_cov_20.310905:1-552 [pilon] Processing NODE_13725_length_243_cov_16.213115:1-243 [pilon] NODE_1436_length_1286_cov_6.000858:1-1286 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 187, Coverage: 14, minDepth: 5 [pilon] Confirmed 875 of 1286 bases (68.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1436_length_1286_cov_6.000858:1-1286 [pilon] Processing NODE_5998_length_541_cov_1.069048:1-541 [pilon] NODE_903_length_1555_cov_23.447001:1-1555 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 814, Coverage: 61, minDepth: 15 [pilon] Confirmed 754 of 1555 bases (48.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_903_length_1555_cov_23.447001:1-1555 [pilon] Processing NODE_14061_length_243_cov_13.762295:1-243 [pilon] NODE_6976_length_473_cov_16.852273:1-473 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 127, Coverage: 12, minDepth: 5 [pilon] Confirmed 356 of 473 bases (75.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6976_length_473_cov_16.852273:1-473 [pilon] Processing NODE_12065_length_245_cov_17.314516:1-245 [pilon] NODE_15121_length_208_cov_5.436782:1-208 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 208 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15121_length_208_cov_5.436782:1-208 [pilon] Processing NODE_7157_length_462_cov_14.296188:1-462 [pilon] NODE_1324_length_1332_cov_2.241949:1-1332 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 83, Coverage: 8, minDepth: 5 [pilon] Confirmed 828 of 1332 bases (62.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1324_length_1332_cov_2.241949:1-1332 [pilon] Processing NODE_6079_length_533_cov_57.368932:1-533 [pilon] NODE_8010_length_418_cov_0.946128:1-418 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 9, Coverage: 3, minDepth: 5 [pilon] Confirmed 72 of 418 bases (17.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8010_length_418_cov_0.946128:1-418 [pilon] Processing NODE_6451_length_507_cov_8.984456:1-507 [pilon] NODE_2097_length_1060_cov_25.597444:1-1060 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 577, Coverage: 47, minDepth: 12 [pilon] Confirmed 898 of 1060 bases (84.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2097_length_1060_cov_25.597444:1-1060 [pilon] Processing NODE_4150_length_699_cov_1.429066:1-699 [pilon] NODE_2052_length_1071_cov_23.478947:1-1071 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 558, Coverage: 31, minDepth: 8 [pilon] Confirmed 847 of 1071 bases (79.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2052_length_1071_cov_23.478947:1-1071 [pilon] Processing NODE_1694_length_1184_cov_1.931326:1-1184 [pilon] NODE_3226_length_829_cov_30.533898:1-829 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 510, Coverage: 72, minDepth: 18 [pilon] Confirmed 556 of 829 bases (67.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3226_length_829_cov_30.533898:1-829 [pilon] Processing NODE_3703_length_754_cov_6.726698:1-754 [pilon] NODE_9655_length_339_cov_21.614679:1-339 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 100, Coverage: 11, minDepth: 5 [pilon] Confirmed 241 of 339 bases (71.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9655_length_339_cov_21.614679:1-339 [pilon] Processing NODE_9930_length_328_cov_30.859903:1-328 [pilon] NODE_11462_length_264_cov_25.006993:1-264 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 71, Coverage: 5, minDepth: 5 [pilon] Confirmed 167 of 264 bases (63.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11462_length_264_cov_25.006993:1-264 [pilon] Processing NODE_7228_length_459_cov_1.121302:1-459 [pilon] NODE_442_length_1977_cov_26.636853:1-1977 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 1202, Coverage: 48, minDepth: 12 [pilon] Confirmed 1740 of 1977 bases (88.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_442_length_1977_cov_26.636853:1-1977 [pilon] Processing NODE_11691_length_256_cov_57.681481:1-256 [pilon] NODE_5757_length_559_cov_7.840183:1-559 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 112, Coverage: 10, minDepth: 5 [pilon] Confirmed 353 of 559 bases (63.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5757_length_559_cov_7.840183:1-559 [pilon] Processing NODE_11916_length_249_cov_13.195312:1-249 [pilon] NODE_4415_length_670_cov_3.914390:1-670 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 58, Coverage: 11, minDepth: 5 [pilon] Confirmed 495 of 670 bases (73.88%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4415_length_670_cov_3.914390:1-670 [pilon] Processing NODE_8689_length_383_cov_11.049618:1-383 [pilon] NODE_9965_length_327_cov_18.898058:1-327 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 75, Coverage: 6, minDepth: 5 [pilon] Confirmed 156 of 327 bases (47.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9965_length_327_cov_18.898058:1-327 [pilon] Processing NODE_5753_length_559_cov_22.143836:1-559 [pilon] NODE_14011_length_243_cov_14.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12867_length_243_cov_24.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14011_length_243_cov_14.131148:1-243 [pilon] Finished processing NODE_12867_length_243_cov_24.336066:1-243 [pilon] Processing NODE_4680_length_645_cov_14.370229:1-645 [pilon] Processing NODE_2014_length_1083_cov_1.708940:1-1083 [pilon] NODE_11741_length_255_cov_19.932836:1-255 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 63, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11741_length_255_cov_19.932836:1-255 [pilon] Processing NODE_7098_length_465_cov_16.752907:1-465 [pilon] NODE_10031_length_324_cov_17.241379:1-324 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 83, Coverage: 16, minDepth: 5 [pilon] Confirmed 263 of 324 bases (81.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10031_length_324_cov_17.241379:1-324 [pilon] Processing NODE_4975_length_620_cov_21.360721:1-620 [pilon] NODE_3096_length_854_cov_2.848568:1-854 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 62, Coverage: 9, minDepth: 5 [pilon] Confirmed 744 of 854 bases (87.12%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3096_length_854_cov_2.848568:1-854 [pilon] Processing NODE_13838_length_243_cov_15.368852:1-243 [pilon] NODE_13780_length_243_cov_15.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13780_length_243_cov_15.819672:1-243 [pilon] Processing NODE_12216_length_243_cov_36.147541:1-243 [pilon] NODE_12637_length_243_cov_27.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12637_length_243_cov_27.040984:1-243 [pilon] Processing NODE_4438_length_667_cov_10.708791:1-667 [pilon] NODE_5870_length_550_cov_1.769231:1-550 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 292 of 550 bases (53.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5870_length_550_cov_1.769231:1-550 [pilon] Processing NODE_9378_length_351_cov_17.704348:1-351 [pilon] NODE_6626_length_495_cov_24.604278:1-495 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 220, Coverage: 32, minDepth: 8 [pilon] Confirmed 398 of 495 bases (80.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6626_length_495_cov_24.604278:1-495 [pilon] Processing NODE_12935_length_243_cov_23.590164:1-243 [pilon] NODE_2165_length_1042_cov_1.636265:1-1042 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 52, Coverage: 6, minDepth: 5 [pilon] Confirmed 601 of 1042 bases (57.68%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2165_length_1042_cov_1.636265:1-1042 [pilon] Processing NODE_1867_length_1122_cov_29.639361:1-1122 [pilon] NODE_13725_length_243_cov_16.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13725_length_243_cov_16.213115:1-243 [pilon] Processing NODE_13628_length_243_cov_17.213115:1-243 [pilon] NODE_11899_length_249_cov_19.390625:1-249 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 59, Coverage: 8, minDepth: 5 [pilon] Confirmed 189 of 249 bases (75.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11899_length_249_cov_19.390625:1-249 [pilon] Processing NODE_13637_length_243_cov_17.155738:1-243 [pilon] NODE_5998_length_541_cov_1.069048:1-541 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 111 of 541 bases (20.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5998_length_541_cov_1.069048:1-541 [pilon] Processing NODE_2319_length_1006_cov_25.089266:1-1006 [pilon] NODE_4150_length_699_cov_1.429066:1-699 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 282 of 699 bases (40.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4150_length_699_cov_1.429066:1-699 [pilon] Processing NODE_11306_length_271_cov_19.853333:1-271 [pilon] NODE_14061_length_243_cov_13.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14061_length_243_cov_13.762295:1-243 [pilon] Processing NODE_8946_length_369_cov_12.693548:1-369 [pilon] NODE_1694_length_1184_cov_1.931326:1-1184 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 60, Coverage: 6, minDepth: 5 [pilon] Confirmed 616 of 1184 bases (52.03%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1694_length_1184_cov_1.931326:1-1184 [pilon] Processing NODE_1871_length_1121_cov_33.496000:1-1121 [pilon] NODE_1900_length_1112_cov_45.384460:1-1112 log: [pilon] frags shovill.bam: coverage 112 [pilon] Total Reads: 1157, Coverage: 112, minDepth: 28 [pilon] Confirmed 1002 of 1112 bases (90.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1900_length_1112_cov_45.384460:1-1112 [pilon] Processing NODE_6214_length_523_cov_22.370647:1-523 [pilon] NODE_9930_length_328_cov_30.859903:1-328 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 144, Coverage: 15, minDepth: 5 [pilon] Confirmed 293 of 328 bases (89.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9930_length_328_cov_30.859903:1-328 [pilon] Processing NODE_19_length_5200_cov_10.977161:1-5200 [pilon] NODE_12065_length_245_cov_17.314516:1-245 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 42, Coverage: 3, minDepth: 5 [pilon] Confirmed 83 of 245 bases (33.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12065_length_245_cov_17.314516:1-245 [pilon] Processing NODE_9697_length_338_cov_33.119816:1-338 [pilon] NODE_7157_length_462_cov_14.296188:1-462 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 100, Coverage: 14, minDepth: 5 [pilon] Confirmed 297 of 462 bases (64.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7157_length_462_cov_14.296188:1-462 [pilon] Processing NODE_14292_length_243_cov_11.918033:1-243 [pilon] NODE_6079_length_533_cov_57.368932:1-533 log: [pilon] frags shovill.bam: coverage 93 [pilon] Total Reads: 543, Coverage: 93, minDepth: 23 [pilon] Confirmed 474 of 533 bases (88.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6079_length_533_cov_57.368932:1-533 [pilon] Processing NODE_12495_length_243_cov_29.172131:1-243 [pilon] NODE_12216_length_243_cov_36.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12216_length_243_cov_36.147541:1-243 [pilon] Processing NODE_12885_length_243_cov_24.180328:1-243 [pilon] NODE_6451_length_507_cov_8.984456:1-507 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 105, Coverage: 7, minDepth: 5 [pilon] Confirmed 296 of 507 bases (58.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6451_length_507_cov_8.984456:1-507 [pilon] Processing NODE_535_length_1875_cov_18.848917:1-1875 [pilon] NODE_7228_length_459_cov_1.121302:1-459 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 123 of 459 bases (26.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7228_length_459_cov_1.121302:1-459 [pilon] Processing NODE_14347_length_243_cov_11.483607:1-243 [pilon] NODE_3703_length_754_cov_6.726698:1-754 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 123, Coverage: 21, minDepth: 5 [pilon] Confirmed 563 of 754 bases (74.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3703_length_754_cov_6.726698:1-754 [pilon] Processing NODE_4004_length_715_cov_14.631313:1-715 [pilon] NODE_11691_length_256_cov_57.681481:1-256 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 174, Coverage: 19, minDepth: 5 [pilon] Confirmed 216 of 256 bases (84.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11691_length_256_cov_57.681481:1-256 [pilon] Processing NODE_5515_length_576_cov_12.874725:1-576 [pilon] NODE_11916_length_249_cov_13.195312:1-249 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 43, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11916_length_249_cov_13.195312:1-249 [pilon] Processing NODE_14210_length_243_cov_12.532787:1-243 [pilon] NODE_5753_length_559_cov_22.143836:1-559 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 250, Coverage: 34, minDepth: 9 [pilon] Confirmed 450 of 559 bases (80.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5753_length_559_cov_22.143836:1-559 [pilon] Processing NODE_10111_length_321_cov_15.125000:1-321 [pilon] NODE_8689_length_383_cov_11.049618:1-383 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 53, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 383 bases (33.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8689_length_383_cov_11.049618:1-383 [pilon] Processing NODE_9082_length_363_cov_4.165289:1-363 [pilon] NODE_13838_length_243_cov_15.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13838_length_243_cov_15.368852:1-243 [pilon] Processing NODE_6594_length_498_cov_0.424403:1-498 [pilon] NODE_11306_length_271_cov_19.853333:1-271 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 62, Coverage: 8, minDepth: 5 [pilon] Confirmed 219 of 271 bases (80.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11306_length_271_cov_19.853333:1-271 [pilon] Processing NODE_8390_length_400_cov_20.000000:1-400 [pilon] NODE_12935_length_243_cov_23.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12935_length_243_cov_23.590164:1-243 [pilon] Processing NODE_2553_length_956_cov_19.920958:1-956 [pilon] NODE_7098_length_465_cov_16.752907:1-465 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 142, Coverage: 20, minDepth: 5 [pilon] Confirmed 349 of 465 bases (75.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7098_length_465_cov_16.752907:1-465 [pilon] Processing NODE_5148_length_606_cov_12.307216:1-606 [pilon] NODE_2014_length_1083_cov_1.708940:1-1083 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 52, Coverage: 6, minDepth: 5 [pilon] Confirmed 624 of 1083 bases (57.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2014_length_1083_cov_1.708940:1-1083 [pilon] Processing NODE_8301_length_404_cov_51.600707:1-404 [pilon] NODE_4680_length_645_cov_14.370229:1-645 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 188, Coverage: 17, minDepth: 5 [pilon] Confirmed 426 of 645 bases (66.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4680_length_645_cov_14.370229:1-645 [pilon] NODE_4438_length_667_cov_10.708791:1-667 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 177, Coverage: 20, minDepth: 5 [pilon] Confirmed 508 of 667 bases (76.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4438_length_667_cov_10.708791:1-667 [pilon] Processing NODE_3270_length_820_cov_1.494993:1-820 [pilon] Processing NODE_9107_length_361_cov_15.854167:1-361 [pilon] NODE_4975_length_620_cov_21.360721:1-620 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 278, Coverage: 24, minDepth: 6 [pilon] Confirmed 470 of 620 bases (75.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4975_length_620_cov_21.360721:1-620 [pilon] Processing NODE_6601_length_497_cov_23.829787:1-497 [pilon] NODE_9378_length_351_cov_17.704348:1-351 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 87, Coverage: 11, minDepth: 5 [pilon] Confirmed 247 of 351 bases (70.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9378_length_351_cov_17.704348:1-351 [pilon] Processing NODE_7050_length_468_cov_10.233429:1-468 [pilon] NODE_1871_length_1121_cov_33.496000:1-1121 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 749, Coverage: 66, minDepth: 17 [pilon] Confirmed 997 of 1121 bases (88.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1871_length_1121_cov_33.496000:1-1121 [pilon] Processing NODE_2889_length_895_cov_2.142119:1-895 [pilon] NODE_1867_length_1122_cov_29.639361:1-1122 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 834, Coverage: 68, minDepth: 17 [pilon] Confirmed 977 of 1122 bases (87.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1867_length_1122_cov_29.639361:1-1122 [pilon] Processing NODE_4057_length_710_cov_12.774194:1-710 [pilon] NODE_19_length_5200_cov_10.977161:1-5200 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 1247, Coverage: 31, minDepth: 8 [pilon] Confirmed 4350 of 5200 bases (83.65%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_19_length_5200_cov_10.977161:1-5200 [pilon] Processing NODE_9489_length_346_cov_11.208889:1-346 [pilon] NODE_13637_length_243_cov_17.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13637_length_243_cov_17.155738:1-243 [pilon] Processing NODE_7248_length_457_cov_16.702381:1-457 [pilon] NODE_12885_length_243_cov_24.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12885_length_243_cov_24.180328:1-243 [pilon] Processing NODE_8900_length_372_cov_13.860558:1-372 [pilon] NODE_13628_length_243_cov_17.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13628_length_243_cov_17.213115:1-243 [pilon] Processing NODE_11987_length_246_cov_24.160000:1-246 [pilon] NODE_2319_length_1006_cov_25.089266:1-1006 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 549, Coverage: 49, minDepth: 12 [pilon] Confirmed 892 of 1006 bases (88.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2319_length_1006_cov_25.089266:1-1006 [pilon] Processing NODE_4405_length_671_cov_3.790909:1-671 [pilon] NODE_8946_length_369_cov_12.693548:1-369 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 72, Coverage: 6, minDepth: 5 [pilon] Confirmed 205 of 369 bases (55.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8946_length_369_cov_12.693548:1-369 [pilon] Processing NODE_1287_length_1346_cov_7.021224:1-1346 [pilon] NODE_6214_length_523_cov_22.370647:1-523 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 219, Coverage: 17, minDepth: 5 [pilon] Confirmed 384 of 523 bases (73.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6214_length_523_cov_22.370647:1-523 [pilon] Processing NODE_2442_length_980_cov_2.635623:1-980 [pilon] NODE_9697_length_338_cov_33.119816:1-338 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 132, Coverage: 8, minDepth: 5 [pilon] Confirmed 155 of 338 bases (45.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9697_length_338_cov_33.119816:1-338 [pilon] Processing NODE_8409_length_399_cov_15.852518:1-399 [pilon] NODE_14292_length_243_cov_11.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14292_length_243_cov_11.918033:1-243 [pilon] Processing NODE_3461_length_790_cov_16.173393:1-790 [pilon] NODE_12495_length_243_cov_29.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12495_length_243_cov_29.172131:1-243 [pilon] Processing NODE_7469_length_444_cov_28.142415:1-444 [pilon] NODE_8390_length_400_cov_20.000000:1-400 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 120, Coverage: 18, minDepth: 5 [pilon] Confirmed 313 of 400 bases (78.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8390_length_400_cov_20.000000:1-400 [pilon] Processing NODE_1937_length_1101_cov_43.197959:1-1101 [pilon] NODE_535_length_1875_cov_18.848917:1-1875 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 783, Coverage: 52, minDepth: 13 [pilon] Confirmed 1541 of 1875 bases (82.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_535_length_1875_cov_18.848917:1-1875 [pilon] Processing NODE_6663_length_493_cov_0.970430:1-493 [pilon] NODE_14347_length_243_cov_11.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14347_length_243_cov_11.483607:1-243 [pilon] Processing NODE_13358_length_243_cov_19.770492:1-243 [pilon] NODE_5515_length_576_cov_12.874725:1-576 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 131, Coverage: 17, minDepth: 5 [pilon] Confirmed 412 of 576 bases (71.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5515_length_576_cov_12.874725:1-576 [pilon] Processing NODE_612_length_1791_cov_25.680240:1-1791 [pilon] NODE_4004_length_715_cov_14.631313:1-715 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 218, Coverage: 17, minDepth: 5 [pilon] Confirmed 668 of 715 bases (93.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4004_length_715_cov_14.631313:1-715 [pilon] Processing NODE_7404_length_448_cov_1.033639:1-448 [pilon] NODE_2889_length_895_cov_2.142119:1-895 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 44, Coverage: 6, minDepth: 5 [pilon] Confirmed 479 of 895 bases (53.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2889_length_895_cov_2.142119:1-895 [pilon] Processing NODE_12665_length_243_cov_26.622951:1-243 [pilon] NODE_14210_length_243_cov_12.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14210_length_243_cov_12.532787:1-243 [pilon] Processing NODE_15038_length_242_cov_25.140496:1-242 [pilon] NODE_9489_length_346_cov_11.208889:1-346 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 57, Coverage: 5, minDepth: 5 [pilon] Confirmed 166 of 346 bases (47.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9489_length_346_cov_11.208889:1-346 [pilon] Processing NODE_13420_length_243_cov_19.098361:1-243 [pilon] NODE_6594_length_498_cov_0.424403:1-498 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 498 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6594_length_498_cov_0.424403:1-498 [pilon] Processing NODE_10939_length_286_cov_20.824242:1-286 [pilon] NODE_8900_length_372_cov_13.860558:1-372 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 66, Coverage: 2, minDepth: 5 [pilon] Confirmed 126 of 372 bases (33.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8900_length_372_cov_13.860558:1-372 [pilon] Processing NODE_3359_length_803_cov_13.272727:1-803 [pilon] NODE_10111_length_321_cov_15.125000:1-321 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 69, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 321 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10111_length_321_cov_15.125000:1-321 [pilon] Processing NODE_5506_length_577_cov_0.828947:1-577 [pilon] NODE_9082_length_363_cov_4.165289:1-363 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 363 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9082_length_363_cov_4.165289:1-363 [pilon] Processing NODE_940_length_1535_cov_3.505658:1-1535 [pilon] NODE_2553_length_956_cov_19.920958:1-956 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 651, Coverage: 64, minDepth: 16 [pilon] Confirmed 818 of 956 bases (85.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2553_length_956_cov_19.920958:1-956 [pilon] Processing NODE_2233_length_1025_cov_0.936947:1-1025 [pilon] NODE_5148_length_606_cov_12.307216:1-606 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 135, Coverage: 16, minDepth: 5 [pilon] Confirmed 476 of 606 bases (78.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5148_length_606_cov_12.307216:1-606 [pilon] Processing NODE_11909_length_249_cov_15.875000:1-249 [pilon] NODE_8301_length_404_cov_51.600707:1-404 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 344, Coverage: 52, minDepth: 13 [pilon] Confirmed 361 of 404 bases (89.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8301_length_404_cov_51.600707:1-404 [pilon] Processing NODE_2844_length_903_cov_17.996164:1-903 [pilon] NODE_6601_length_497_cov_23.829787:1-497 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 222, Coverage: 33, minDepth: 8 [pilon] Confirmed 431 of 497 bases (86.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6601_length_497_cov_23.829787:1-497 [pilon] Processing NODE_13494_length_243_cov_18.409836:1-243 [pilon] NODE_9107_length_361_cov_15.854167:1-361 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 84, Coverage: 4, minDepth: 5 [pilon] Confirmed 135 of 361 bases (37.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9107_length_361_cov_15.854167:1-361 [pilon] Processing NODE_13994_length_243_cov_14.221311:1-243 [pilon] NODE_3270_length_820_cov_1.494993:1-820 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 36, Coverage: 6, minDepth: 5 [pilon] Confirmed 398 of 820 bases (48.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3270_length_820_cov_1.494993:1-820 [pilon] Processing NODE_6203_length_524_cov_12.282878:1-524 [pilon] NODE_7050_length_468_cov_10.233429:1-468 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 84, Coverage: 12, minDepth: 5 [pilon] Confirmed 316 of 468 bases (67.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7050_length_468_cov_10.233429:1-468 [pilon] Processing NODE_823_length_1612_cov_3.978538:1-1612 [pilon] NODE_4057_length_710_cov_12.774194:1-710 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 167, Coverage: 30, minDepth: 8 [pilon] Confirmed 580 of 710 bases (81.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4057_length_710_cov_12.774194:1-710 [pilon] Processing NODE_11721_length_255_cov_24.582090:1-255 [pilon] NODE_7248_length_457_cov_16.702381:1-457 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 133, Coverage: 22, minDepth: 6 [pilon] Confirmed 365 of 457 bases (79.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7248_length_457_cov_16.702381:1-457 [pilon] Processing NODE_12192_length_243_cov_37.049180:1-243 [pilon] NODE_4405_length_671_cov_3.790909:1-671 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 65, Coverage: 12, minDepth: 5 [pilon] Confirmed 555 of 671 bases (82.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4405_length_671_cov_3.790909:1-671 [pilon] Processing NODE_8443_length_397_cov_15.902174:1-397 [pilon] NODE_11987_length_246_cov_24.160000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 81, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11987_length_246_cov_24.160000:1-246 [pilon] Processing NODE_11767_length_255_cov_11.171642:1-255 [pilon] NODE_2442_length_980_cov_2.635623:1-980 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 58, Coverage: 7, minDepth: 5 [pilon] Confirmed 613 of 980 bases (62.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2442_length_980_cov_2.635623:1-980 [pilon] Processing NODE_1328_length_1329_cov_30.301325:1-1329 [pilon] NODE_1937_length_1101_cov_43.197959:1-1101 log: [pilon] frags shovill.bam: coverage 94 [pilon] Total Reads: 938, Coverage: 94, minDepth: 24 [pilon] Confirmed 988 of 1101 bases (89.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1937_length_1101_cov_43.197959:1-1101 [pilon] Processing NODE_11968_length_246_cov_32.920000:1-246 [pilon] NODE_8409_length_399_cov_15.852518:1-399 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 110, Coverage: 19, minDepth: 5 [pilon] Confirmed 327 of 399 bases (81.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8409_length_399_cov_15.852518:1-399 [pilon] Processing NODE_5509_length_576_cov_26.817582:1-576 [pilon] NODE_1287_length_1346_cov_7.021224:1-1346 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 232, Coverage: 15, minDepth: 5 [pilon] Confirmed 935 of 1346 bases (69.47%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1287_length_1346_cov_7.021224:1-1346 [pilon] Processing NODE_3934_length_723_cov_4.448505:1-723 [pilon] NODE_13420_length_243_cov_19.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13420_length_243_cov_19.098361:1-243 [pilon] Processing NODE_9738_length_336_cov_25.334884:1-336 [pilon] NODE_12665_length_243_cov_26.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12665_length_243_cov_26.622951:1-243 [pilon] Processing NODE_9859_length_331_cov_58.866667:1-331 [pilon] NODE_3461_length_790_cov_16.173393:1-790 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 244, Coverage: 26, minDepth: 7 [pilon] Confirmed 730 of 790 bases (92.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3461_length_790_cov_16.173393:1-790 [pilon] Processing NODE_2216_length_1029_cov_22.536344:1-1029 [pilon] NODE_6663_length_493_cov_0.970430:1-493 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 227 of 493 bases (46.04%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6663_length_493_cov_0.970430:1-493 [pilon] Processing NODE_6244_length_521_cov_24.485000:1-521 [pilon] NODE_7469_length_444_cov_28.142415:1-444 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 201, Coverage: 27, minDepth: 7 [pilon] Confirmed 334 of 444 bases (75.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7469_length_444_cov_28.142415:1-444 [pilon] Processing NODE_7774_length_429_cov_5.107143:1-429 [pilon] NODE_3359_length_803_cov_13.272727:1-803 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 222, Coverage: 29, minDepth: 7 [pilon] Confirmed 669 of 803 bases (83.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3359_length_803_cov_13.272727:1-803 [pilon] Processing NODE_10921_length_288_cov_9.616766:1-288 [pilon] NODE_13358_length_243_cov_19.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13358_length_243_cov_19.770492:1-243 [pilon] Processing NODE_3829_length_738_cov_1.136143:1-738 [pilon] NODE_15038_length_242_cov_25.140496:1-242 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 76, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 242 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15038_length_242_cov_25.140496:1-242 [pilon] Processing NODE_8426_length_398_cov_22.310469:1-398 [pilon] NODE_7404_length_448_cov_1.033639:1-448 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 147 of 448 bases (32.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7404_length_448_cov_1.033639:1-448 [pilon] Processing NODE_868_length_1583_cov_24.293434:1-1583 [pilon] NODE_612_length_1791_cov_25.680240:1-1791 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 954, Coverage: 46, minDepth: 12 [pilon] Confirmed 1375 of 1791 bases (76.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_612_length_1791_cov_25.680240:1-1791 [pilon] Processing NODE_14554_length_243_cov_9.877049:1-243 [pilon] NODE_5506_length_577_cov_0.828947:1-577 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 16, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 577 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5506_length_577_cov_0.828947:1-577 [pilon] Processing NODE_14648_length_243_cov_9.040984:1-243 [pilon] NODE_13494_length_243_cov_18.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13494_length_243_cov_18.409836:1-243 [pilon] Processing NODE_627_length_1777_cov_2.212560:1-1777 [pilon] NODE_10939_length_286_cov_20.824242:1-286 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 79, Coverage: 4, minDepth: 5 [pilon] Confirmed 126 of 286 bases (44.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10939_length_286_cov_20.824242:1-286 [pilon] Processing NODE_10262_length_315_cov_8.912371:1-315 [pilon] NODE_940_length_1535_cov_3.505658:1-1535 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 143, Coverage: 12, minDepth: 5 [pilon] Confirmed 1384 of 1535 bases (90.16%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_940_length_1535_cov_3.505658:1-1535 [pilon] Processing NODE_8706_length_382_cov_12.766284:1-382 [pilon] NODE_11968_length_246_cov_32.920000:1-246 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 94, Coverage: 7, minDepth: 5 [pilon] Confirmed 156 of 246 bases (63.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11968_length_246_cov_32.920000:1-246 [pilon] Processing NODE_14696_length_243_cov_8.598361:1-243 [pilon] NODE_13994_length_243_cov_14.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13994_length_243_cov_14.221311:1-243 [pilon] Processing NODE_6854_length_480_cov_20.061281:1-480 [pilon] NODE_2233_length_1025_cov_0.936947:1-1025 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 26, Coverage: 3, minDepth: 5 [pilon] Confirmed 265 of 1025 bases (25.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2233_length_1025_cov_0.936947:1-1025 [pilon] Processing NODE_2235_length_1023_cov_36.348115:1-1023 [pilon] NODE_11909_length_249_cov_15.875000:1-249 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 46, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11909_length_249_cov_15.875000:1-249 [pilon] Processing NODE_15179_length_171_cov_6.900000:1-171 [pilon] NODE_11721_length_255_cov_24.582090:1-255 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 72, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11721_length_255_cov_24.582090:1-255 [pilon] Processing NODE_8368_length_402_cov_2.893238:1-402 [pilon] NODE_6203_length_524_cov_12.282878:1-524 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 123, Coverage: 13, minDepth: 5 [pilon] Confirmed 332 of 524 bases (63.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6203_length_524_cov_12.282878:1-524 [pilon] Processing NODE_8113_length_412_cov_35.364261:1-412 [pilon] NODE_9738_length_336_cov_25.334884:1-336 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 122, Coverage: 24, minDepth: 6 [pilon] Confirmed 298 of 336 bases (88.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9738_length_336_cov_25.334884:1-336 [pilon] Processing NODE_9046_length_363_cov_42.690083:1-363 [pilon] NODE_823_length_1612_cov_3.978538:1-1612 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 137, Coverage: 11, minDepth: 5 [pilon] Confirmed 1401 of 1612 bases (86.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_823_length_1612_cov_3.978538:1-1612 [pilon] Processing NODE_5586_length_571_cov_19.782222:1-571 [pilon] NODE_2844_length_903_cov_17.996164:1-903 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 349, Coverage: 27, minDepth: 7 [pilon] Confirmed 703 of 903 bases (77.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2844_length_903_cov_17.996164:1-903 [pilon] Processing NODE_10516_length_304_cov_10.715847:1-304 [pilon] NODE_8443_length_397_cov_15.902174:1-397 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 92, Coverage: 13, minDepth: 5 [pilon] Confirmed 327 of 397 bases (82.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8443_length_397_cov_15.902174:1-397 [pilon] Processing NODE_12039_length_246_cov_8.104000:1-246 [pilon] NODE_12192_length_243_cov_37.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12192_length_243_cov_37.049180:1-243 [pilon] Processing NODE_8572_length_390_cov_10.802974:1-390 [pilon] NODE_11767_length_255_cov_11.171642:1-255 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 150 of 255 bases (58.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11767_length_255_cov_11.171642:1-255 [pilon] Processing NODE_3964_length_719_cov_7.886288:1-719 [pilon] NODE_1328_length_1329_cov_30.301325:1-1329 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 886, Coverage: 58, minDepth: 15 [pilon] Confirmed 1133 of 1329 bases (85.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1328_length_1329_cov_30.301325:1-1329 [pilon] Processing NODE_1433_length_1287_cov_16.237564:1-1287 [pilon] NODE_3934_length_723_cov_4.448505:1-723 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 60, Coverage: 11, minDepth: 5 [pilon] Confirmed 567 of 723 bases (78.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3934_length_723_cov_4.448505:1-723 [pilon] Processing NODE_14982_length_243_cov_5.696721:1-243 [pilon] NODE_5509_length_576_cov_26.817582:1-576 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 308, Coverage: 21, minDepth: 5 [pilon] Confirmed 348 of 576 bases (60.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5509_length_576_cov_26.817582:1-576 [pilon] Processing NODE_7634_length_436_cov_0.857143:1-436 [pilon] NODE_9859_length_331_cov_58.866667:1-331 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 273, Coverage: 49, minDepth: 12 [pilon] Confirmed 289 of 331 bases (87.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9859_length_331_cov_58.866667:1-331 [pilon] Processing NODE_1862_length_1125_cov_31.161355:1-1125 [pilon] NODE_10921_length_288_cov_9.616766:1-288 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 45, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10921_length_288_cov_9.616766:1-288 [pilon] Processing NODE_772_length_1642_cov_4.140697:1-1642 [pilon] NODE_6244_length_521_cov_24.485000:1-521 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 223, Coverage: 27, minDepth: 7 [pilon] Confirmed 385 of 521 bases (73.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6244_length_521_cov_24.485000:1-521 [pilon] Processing NODE_4376_length_673_cov_25.347826:1-673 [pilon] NODE_2216_length_1029_cov_22.536344:1-1029 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 492, Coverage: 44, minDepth: 11 [pilon] Confirmed 981 of 1029 bases (95.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2216_length_1029_cov_22.536344:1-1029 [pilon] Processing NODE_9951_length_327_cov_30.373786:1-327 [pilon] NODE_3829_length_738_cov_1.136143:1-738 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 28, Coverage: 4, minDepth: 5 [pilon] Confirmed 298 of 738 bases (40.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3829_length_738_cov_1.136143:1-738 [pilon] Processing NODE_3009_length_871_cov_23.404000:1-871 [pilon] NODE_7774_length_429_cov_5.107143:1-429 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 48, Coverage: 7, minDepth: 5 [pilon] Confirmed 252 of 429 bases (58.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7774_length_429_cov_5.107143:1-429 [pilon] Processing NODE_6706_length_490_cov_2.151762:1-490 [pilon] NODE_8426_length_398_cov_22.310469:1-398 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 126, Coverage: 19, minDepth: 5 [pilon] Confirmed 297 of 398 bases (74.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8426_length_398_cov_22.310469:1-398 [pilon] Processing NODE_4104_length_704_cov_18.759863:1-704 [pilon] NODE_14696_length_243_cov_8.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14696_length_243_cov_8.598361:1-243 [pilon] Processing NODE_9711_length_338_cov_5.285714:1-338 [pilon] NODE_14554_length_243_cov_9.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14554_length_243_cov_9.877049:1-243 [pilon] Processing NODE_9879_length_330_cov_29.009569:1-330 [pilon] NODE_868_length_1583_cov_24.293434:1-1583 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 798, Coverage: 57, minDepth: 14 [pilon] Confirmed 1368 of 1583 bases (86.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_868_length_1583_cov_24.293434:1-1583 [pilon] Processing NODE_9887_length_330_cov_24.019139:1-330 [pilon] NODE_2235_length_1023_cov_36.348115:1-1023 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 723, Coverage: 65, minDepth: 16 [pilon] Confirmed 916 of 1023 bases (89.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2235_length_1023_cov_36.348115:1-1023 [pilon] Processing NODE_10535_length_303_cov_21.307692:1-303 [pilon] NODE_9046_length_363_cov_42.690083:1-363 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 217, Coverage: 34, minDepth: 9 [pilon] Confirmed 313 of 363 bases (86.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9046_length_363_cov_42.690083:1-363 [pilon] Processing NODE_3025_length_868_cov_20.953146:1-868 [pilon] NODE_14648_length_243_cov_9.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14648_length_243_cov_9.040984:1-243 [pilon] Processing NODE_12966_length_243_cov_23.303279:1-243 [pilon] NODE_6854_length_480_cov_20.061281:1-480 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 163, Coverage: 31, minDepth: 8 [pilon] Confirmed 395 of 480 bases (82.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6854_length_480_cov_20.061281:1-480 [pilon] Processing NODE_6263_length_520_cov_21.824561:1-520 [pilon] NODE_10262_length_315_cov_8.912371:1-315 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 36, Coverage: 3, minDepth: 5 [pilon] Confirmed 119 of 315 bases (37.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10262_length_315_cov_8.912371:1-315 [pilon] Processing NODE_2169_length_1041_cov_3.097826:1-1041 [pilon] NODE_15179_length_171_cov_6.900000:1-171 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 171 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15179_length_171_cov_6.900000:1-171 [pilon] Processing NODE_6090_length_533_cov_1.461165:1-533 [pilon] NODE_627_length_1777_cov_2.212560:1-1777 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 93, Coverage: 7, minDepth: 5 [pilon] Confirmed 1127 of 1777 bases (63.42%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_627_length_1777_cov_2.212560:1-1777 [pilon] Processing NODE_6788_length_484_cov_0.754821:1-484 [pilon] NODE_8706_length_382_cov_12.766284:1-382 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 74, Coverage: 7, minDepth: 5 [pilon] Confirmed 189 of 382 bases (49.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8706_length_382_cov_12.766284:1-382 [pilon] Processing NODE_10811_length_292_cov_14.368421:1-292 [pilon] NODE_8572_length_390_cov_10.802974:1-390 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 72, Coverage: 7, minDepth: 5 [pilon] Confirmed 231 of 390 bases (59.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8572_length_390_cov_10.802974:1-390 [pilon] Processing NODE_4122_length_703_cov_1.005155:1-703 [pilon] NODE_8113_length_412_cov_35.364261:1-412 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 243, Coverage: 24, minDepth: 6 [pilon] Confirmed 290 of 412 bases (70.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8113_length_412_cov_35.364261:1-412 [pilon] Processing NODE_12314_length_243_cov_32.885246:1-243 [pilon] NODE_8368_length_402_cov_2.893238:1-402 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 24, Coverage: 7, minDepth: 5 [pilon] Confirmed 325 of 402 bases (80.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8368_length_402_cov_2.893238:1-402 [pilon] Processing NODE_14322_length_243_cov_11.688525:1-243 [pilon] NODE_10516_length_304_cov_10.715847:1-304 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 34, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 304 bases (40.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10516_length_304_cov_10.715847:1-304 [pilon] Processing NODE_7511_length_443_cov_0.726708:1-443 [pilon] NODE_12039_length_246_cov_8.104000:1-246 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12039_length_246_cov_8.104000:1-246 [pilon] Processing NODE_5120_length_608_cov_29.303901:1-608 [pilon] NODE_3964_length_719_cov_7.886288:1-719 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 118, Coverage: 9, minDepth: 5 [pilon] Confirmed 419 of 719 bases (58.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3964_length_719_cov_7.886288:1-719 [pilon] Processing NODE_9413_length_350_cov_8.580786:1-350 [pilon] NODE_5586_length_571_cov_19.782222:1-571 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 209, Coverage: 26, minDepth: 7 [pilon] Confirmed 316 of 571 bases (55.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5586_length_571_cov_19.782222:1-571 [pilon] Processing NODE_9462_length_348_cov_7.942731:1-348 [pilon] NODE_14982_length_243_cov_5.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14982_length_243_cov_5.696721:1-243 [pilon] Processing NODE_8090_length_414_cov_9.692833:1-414 [pilon] NODE_1433_length_1287_cov_16.237564:1-1287 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 445, Coverage: 35, minDepth: 9 [pilon] Confirmed 1154 of 1287 bases (89.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1433_length_1287_cov_16.237564:1-1287 [pilon] Processing NODE_4608_length_652_cov_5.472693:1-652 [pilon] NODE_9711_length_338_cov_5.285714:1-338 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 30, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 338 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9711_length_338_cov_5.285714:1-338 [pilon] Processing NODE_4810_length_634_cov_0.923977:1-634 [pilon] NODE_7634_length_436_cov_0.857143:1-436 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 29 of 436 bases (6.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7634_length_436_cov_0.857143:1-436 [pilon] Processing NODE_13452_length_243_cov_18.819672:1-243 [pilon] NODE_3025_length_868_cov_20.953146:1-868 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 353, Coverage: 33, minDepth: 8 [pilon] Confirmed 705 of 868 bases (81.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3025_length_868_cov_20.953146:1-868 [pilon] Processing NODE_11141_length_278_cov_48.515924:1-278 [pilon] NODE_9951_length_327_cov_30.373786:1-327 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 86, Coverage: 5, minDepth: 5 [pilon] Confirmed 132 of 327 bases (40.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9951_length_327_cov_30.373786:1-327 [pilon] Processing NODE_2423_length_985_cov_13.575231:1-985 [pilon] NODE_10535_length_303_cov_21.307692:1-303 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 91, Coverage: 9, minDepth: 5 [pilon] Confirmed 240 of 303 bases (79.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10535_length_303_cov_21.307692:1-303 [pilon] Processing NODE_10145_length_320_cov_12.859296:1-320 [pilon] NODE_772_length_1642_cov_4.140697:1-1642 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 187, Coverage: 13, minDepth: 5 [pilon] Confirmed 968 of 1642 bases (58.95%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_772_length_1642_cov_4.140697:1-1642 [pilon] Processing NODE_14589_length_243_cov_9.532787:1-243 [pilon] NODE_1862_length_1125_cov_31.161355:1-1125 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 731, Coverage: 52, minDepth: 13 [pilon] Confirmed 898 of 1125 bases (79.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1862_length_1125_cov_31.161355:1-1125 [pilon] Processing NODE_13721_length_243_cov_16.245902:1-243 [pilon] NODE_4376_length_673_cov_25.347826:1-673 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 346, Coverage: 25, minDepth: 6 [pilon] Confirmed 512 of 673 bases (76.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4376_length_673_cov_25.347826:1-673 [pilon] Processing NODE_14863_length_243_cov_7.032787:1-243 [pilon] NODE_3009_length_871_cov_23.404000:1-871 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 444, Coverage: 51, minDepth: 13 [pilon] Confirmed 579 of 871 bases (66.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3009_length_871_cov_23.404000:1-871 [pilon] Processing NODE_2152_length_1044_cov_57.247021:1-1044 [pilon] NODE_6706_length_490_cov_2.151762:1-490 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 244 of 490 bases (49.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6706_length_490_cov_2.151762:1-490 [pilon] Processing NODE_13349_length_243_cov_19.852459:1-243 [pilon] NODE_4104_length_704_cov_18.759863:1-704 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 301, Coverage: 31, minDepth: 8 [pilon] Confirmed 657 of 704 bases (93.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4104_length_704_cov_18.759863:1-704 [pilon] Processing NODE_11943_length_248_cov_7.188976:1-248 [pilon] NODE_9879_length_330_cov_29.009569:1-330 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 128, Coverage: 14, minDepth: 5 [pilon] Confirmed 237 of 330 bases (71.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9879_length_330_cov_29.009569:1-330 [pilon] Processing NODE_11100_length_279_cov_26.405063:1-279 [pilon] NODE_4122_length_703_cov_1.005155:1-703 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 496 of 703 bases (70.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4122_length_703_cov_1.005155:1-703 [pilon] Processing NODE_4339_length_677_cov_3.226619:1-677 [pilon] NODE_9887_length_330_cov_24.019139:1-330 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 118, Coverage: 15, minDepth: 5 [pilon] Confirmed 285 of 330 bases (86.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9887_length_330_cov_24.019139:1-330 [pilon] Processing NODE_1439_length_1285_cov_15.238832:1-1285 [pilon] NODE_12966_length_243_cov_23.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12966_length_243_cov_23.303279:1-243 [pilon] Processing NODE_13837_length_243_cov_15.368852:1-243 [pilon] NODE_6263_length_520_cov_21.824561:1-520 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 230, Coverage: 25, minDepth: 6 [pilon] Confirmed 345 of 520 bases (66.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6263_length_520_cov_21.824561:1-520 [pilon] Processing NODE_14963_length_243_cov_5.942623:1-243 [pilon] NODE_6090_length_533_cov_1.461165:1-533 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 281 of 533 bases (52.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6090_length_533_cov_1.461165:1-533 [pilon] Processing NODE_13694_length_243_cov_16.450820:1-243 [pilon] NODE_6788_length_484_cov_0.754821:1-484 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 484 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6788_length_484_cov_0.754821:1-484 [pilon] Processing NODE_1152_length_1416_cov_28.587645:1-1416 [pilon] NODE_2169_length_1041_cov_3.097826:1-1041 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 72, Coverage: 9, minDepth: 5 [pilon] Confirmed 849 of 1041 bases (81.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2169_length_1041_cov_3.097826:1-1041 [pilon] Processing NODE_5124_length_608_cov_3.794661:1-608 [pilon] NODE_12314_length_243_cov_32.885246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12314_length_243_cov_32.885246:1-243 [pilon] Processing NODE_9029_length_365_cov_16.155738:1-365 [pilon] NODE_10811_length_292_cov_14.368421:1-292 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 61, Coverage: 6, minDepth: 5 [pilon] Confirmed 143 of 292 bases (48.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10811_length_292_cov_14.368421:1-292 [pilon] Processing NODE_2568_length_953_cov_19.090144:1-953 [pilon] NODE_4810_length_634_cov_0.923977:1-634 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 147 of 634 bases (23.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4810_length_634_cov_0.923977:1-634 [pilon] Processing NODE_4979_length_620_cov_4.402806:1-620 [pilon] NODE_14322_length_243_cov_11.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14322_length_243_cov_11.688525:1-243 [pilon] Processing NODE_3163_length_839_cov_9.082173:1-839 [pilon] NODE_5120_length_608_cov_29.303901:1-608 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 371, Coverage: 48, minDepth: 12 [pilon] Confirmed 381 of 608 bases (62.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5120_length_608_cov_29.303901:1-608 [pilon] Processing NODE_11675_length_258_cov_7.416058:1-258 [pilon] NODE_7511_length_443_cov_0.726708:1-443 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 161 of 443 bases (36.34%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7511_length_443_cov_0.726708:1-443 [pilon] Processing NODE_3216_length_830_cov_35.857546:1-830 [pilon] NODE_10145_length_320_cov_12.859296:1-320 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 61, Coverage: 4, minDepth: 5 [pilon] Confirmed 142 of 320 bases (44.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10145_length_320_cov_12.859296:1-320 [pilon] Processing NODE_1899_length_1113_cov_20.434476:1-1113 [pilon] NODE_9462_length_348_cov_7.942731:1-348 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 48, Coverage: 6, minDepth: 5 [pilon] Confirmed 197 of 348 bases (56.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9462_length_348_cov_7.942731:1-348 [pilon] Processing NODE_13391_length_243_cov_19.385246:1-243 [pilon] NODE_11141_length_278_cov_48.515924:1-278 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 168, Coverage: 25, minDepth: 6 [pilon] Confirmed 247 of 278 bases (88.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11141_length_278_cov_48.515924:1-278 [pilon] Processing NODE_6501_length_504_cov_1.185379:1-504 [pilon] NODE_8090_length_414_cov_9.692833:1-414 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 69, Coverage: 7, minDepth: 5 [pilon] Confirmed 224 of 414 bases (54.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8090_length_414_cov_9.692833:1-414 [pilon] Processing NODE_14588_length_243_cov_9.532787:1-243 [pilon] NODE_4608_length_652_cov_5.472693:1-652 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 64, Coverage: 13, minDepth: 5 [pilon] Confirmed 458 of 652 bases (70.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4608_length_652_cov_5.472693:1-652 [pilon] Processing NODE_8144_length_411_cov_14.389655:1-411 [pilon] NODE_13452_length_243_cov_18.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13452_length_243_cov_18.819672:1-243 [pilon] Processing NODE_6994_length_471_cov_58.068571:1-471 [pilon] NODE_9413_length_350_cov_8.580786:1-350 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 44, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 350 bases (37.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9413_length_350_cov_8.580786:1-350 [pilon] Processing NODE_8726_length_381_cov_14.523077:1-381 [pilon] NODE_4339_length_677_cov_3.226619:1-677 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 332 of 677 bases (49.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4339_length_677_cov_3.226619:1-677 [pilon] Processing NODE_3207_length_832_cov_3.295359:1-832 [pilon] NODE_14863_length_243_cov_7.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14863_length_243_cov_7.032787:1-243 [pilon] Processing NODE_2481_length_970_cov_29.521790:1-970 [pilon] NODE_14589_length_243_cov_9.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14589_length_243_cov_9.532787:1-243 [pilon] Processing NODE_11070_length_280_cov_23.987421:1-280 [pilon] NODE_13721_length_243_cov_16.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13721_length_243_cov_16.245902:1-243 [pilon] Processing NODE_11861_length_251_cov_13.823077:1-251 [pilon] NODE_13349_length_243_cov_19.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13349_length_243_cov_19.852459:1-243 [pilon] Processing NODE_4711_length_642_cov_26.067179:1-642 [pilon] NODE_2423_length_985_cov_13.575231:1-985 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 342, Coverage: 24, minDepth: 6 [pilon] Confirmed 818 of 985 bases (83.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2423_length_985_cov_13.575231:1-985 [pilon] Processing NODE_982_length_1508_cov_1.972603:1-1508 [pilon] NODE_11943_length_248_cov_7.188976:1-248 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 19, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 248 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11943_length_248_cov_7.188976:1-248 [pilon] Processing NODE_4187_length_695_cov_11.850174:1-695 [pilon] NODE_2152_length_1044_cov_57.247021:1-1044 log: [pilon] frags shovill.bam: coverage 133 [pilon] Total Reads: 1218, Coverage: 133, minDepth: 33 [pilon] Confirmed 927 of 1044 bases (88.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2152_length_1044_cov_57.247021:1-1044 [pilon] Processing NODE_5499_length_577_cov_7.932018:1-577 [pilon] NODE_11100_length_279_cov_26.405063:1-279 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 85, Coverage: 8, minDepth: 5 [pilon] Confirmed 190 of 279 bases (68.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11100_length_279_cov_26.405063:1-279 [pilon] Processing NODE_14711_length_243_cov_8.491803:1-243 [pilon] NODE_4979_length_620_cov_4.402806:1-620 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 58, Coverage: 11, minDepth: 5 [pilon] Confirmed 482 of 620 bases (77.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4979_length_620_cov_4.402806:1-620 [pilon] Processing NODE_15149_length_191_cov_31.257143:1-191 [pilon] NODE_13837_length_243_cov_15.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13837_length_243_cov_15.368852:1-243 [pilon] Processing NODE_5862_length_551_cov_0.783721:1-551 [pilon] NODE_1439_length_1285_cov_15.238832:1-1285 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 474, Coverage: 41, minDepth: 10 [pilon] Confirmed 900 of 1285 bases (70.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1439_length_1285_cov_15.238832:1-1285 [pilon] Processing NODE_9384_length_351_cov_14.843478:1-351 [pilon] NODE_1899_length_1113_cov_20.434476:1-1113 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 501, Coverage: 47, minDepth: 12 [pilon] Confirmed 1011 of 1113 bases (90.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1899_length_1113_cov_20.434476:1-1113 [pilon] Processing NODE_12733_length_243_cov_25.795082:1-243 [pilon] NODE_14963_length_243_cov_5.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14963_length_243_cov_5.942623:1-243 [pilon] Processing NODE_314_length_2210_cov_33.163236:1-2210 [pilon] NODE_5124_length_608_cov_3.794661:1-608 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 52, Coverage: 11, minDepth: 5 [pilon] Confirmed 282 of 608 bases (46.38%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5124_length_608_cov_3.794661:1-608 [pilon] Processing NODE_9916_length_329_cov_21.331731:1-329 [pilon] NODE_13694_length_243_cov_16.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13694_length_243_cov_16.450820:1-243 [pilon] Processing NODE_3546_length_778_cov_1.986301:1-778 [pilon] NODE_1152_length_1416_cov_28.587645:1-1416 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 894, Coverage: 50, minDepth: 13 [pilon] Confirmed 1316 of 1416 bases (92.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1152_length_1416_cov_28.587645:1-1416 [pilon] Processing NODE_5964_length_544_cov_1.004728:1-544 [pilon] NODE_6501_length_504_cov_1.185379:1-504 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 162 of 504 bases (32.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6501_length_504_cov_1.185379:1-504 [pilon] Processing NODE_9849_length_332_cov_35.213270:1-332 [pilon] NODE_9029_length_365_cov_16.155738:1-365 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 106, Coverage: 10, minDepth: 5 [pilon] Confirmed 213 of 365 bases (58.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9029_length_365_cov_16.155738:1-365 [pilon] Processing NODE_3734_length_750_cov_17.688394:1-750 [pilon] NODE_3163_length_839_cov_9.082173:1-839 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 172, Coverage: 18, minDepth: 5 [pilon] Confirmed 711 of 839 bases (84.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3163_length_839_cov_9.082173:1-839 [pilon] Processing NODE_6832_length_481_cov_17.094444:1-481 [pilon] NODE_2568_length_953_cov_19.090144:1-953 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 402, Coverage: 22, minDepth: 6 [pilon] Confirmed 626 of 953 bases (65.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2568_length_953_cov_19.090144:1-953 [pilon] Processing NODE_14366_length_243_cov_11.319672:1-243 [pilon] NODE_11675_length_258_cov_7.416058:1-258 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11675_length_258_cov_7.416058:1-258 [pilon] Processing NODE_5579_length_572_cov_18.527716:1-572 [pilon] NODE_13391_length_243_cov_19.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13391_length_243_cov_19.385246:1-243 [pilon] Processing NODE_12699_length_243_cov_26.237705:1-243 [pilon] NODE_3207_length_832_cov_3.295359:1-832 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 61, Coverage: 9, minDepth: 5 [pilon] Confirmed 449 of 832 bases (53.97%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3207_length_832_cov_3.295359:1-832 [pilon] Processing NODE_10612_length_300_cov_25.100559:1-300 [pilon] NODE_3216_length_830_cov_35.857546:1-830 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 578, Coverage: 69, minDepth: 17 [pilon] Confirmed 755 of 830 bases (90.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3216_length_830_cov_35.857546:1-830 [pilon] Processing NODE_14815_length_243_cov_7.573770:1-243 [pilon] NODE_14588_length_243_cov_9.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14588_length_243_cov_9.532787:1-243 [pilon] Processing NODE_3860_length_732_cov_43.911620:1-732 [pilon] NODE_8144_length_411_cov_14.389655:1-411 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 99, Coverage: 20, minDepth: 5 [pilon] Confirmed 318 of 411 bases (77.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8144_length_411_cov_14.389655:1-411 [pilon] Processing NODE_312_length_2216_cov_12.433890:1-2216 [pilon] NODE_6994_length_471_cov_58.068571:1-471 log: [pilon] frags shovill.bam: coverage 95 [pilon] Total Reads: 459, Coverage: 95, minDepth: 24 [pilon] Confirmed 380 of 471 bases (80.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6994_length_471_cov_58.068571:1-471 [pilon] Processing NODE_7742_length_430_cov_10.944984:1-430 [pilon] NODE_8726_length_381_cov_14.523077:1-381 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 381 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8726_length_381_cov_14.523077:1-381 [pilon] Processing NODE_2680_length_932_cov_16.358816:1-932 [pilon] NODE_15149_length_191_cov_31.257143:1-191 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 54, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 191 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15149_length_191_cov_31.257143:1-191 [pilon] Processing NODE_8866_length_374_cov_4.110672:1-374 [pilon] NODE_2481_length_970_cov_29.521790:1-970 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 578, Coverage: 47, minDepth: 12 [pilon] Confirmed 738 of 970 bases (76.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2481_length_970_cov_29.521790:1-970 [pilon] Processing NODE_5451_length_580_cov_30.206972:1-580 [pilon] NODE_12733_length_243_cov_25.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12733_length_243_cov_25.795082:1-243 [pilon] Processing NODE_551_length_1857_cov_11.892281:1-1857 [pilon] NODE_11070_length_280_cov_23.987421:1-280 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 280 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11070_length_280_cov_23.987421:1-280 [pilon] Processing NODE_8858_length_374_cov_20.770751:1-374 [pilon] NODE_982_length_1508_cov_1.972603:1-1508 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 83, Coverage: 7, minDepth: 5 [pilon] Confirmed 716 of 1508 bases (47.48%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_982_length_1508_cov_1.972603:1-1508 [pilon] Processing NODE_14501_length_243_cov_10.278689:1-243 [pilon] NODE_4187_length_695_cov_11.850174:1-695 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 168, Coverage: 12, minDepth: 5 [pilon] Confirmed 431 of 695 bases (62.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4187_length_695_cov_11.850174:1-695 [pilon] Processing NODE_6275_length_519_cov_25.520101:1-519 [pilon] NODE_4711_length_642_cov_26.067179:1-642 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 315, Coverage: 51, minDepth: 13 [pilon] Confirmed 512 of 642 bases (79.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4711_length_642_cov_26.067179:1-642 [pilon] Processing NODE_4101_length_705_cov_2.597603:1-705 [pilon] NODE_11861_length_251_cov_13.823077:1-251 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 251 bases (51.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11861_length_251_cov_13.823077:1-251 [pilon] Processing NODE_2180_length_1039_cov_1.620915:1-1039 [pilon] NODE_14711_length_243_cov_8.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14711_length_243_cov_8.491803:1-243 [pilon] Processing NODE_2628_length_942_cov_1.058465:1-942 [pilon] NODE_5499_length_577_cov_7.932018:1-577 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 88, Coverage: 12, minDepth: 5 [pilon] Confirmed 434 of 577 bases (75.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5499_length_577_cov_7.932018:1-577 [pilon] Processing NODE_5050_length_615_cov_2.261134:1-615 [pilon] NODE_9849_length_332_cov_35.213270:1-332 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 174, Coverage: 29, minDepth: 7 [pilon] Confirmed 305 of 332 bases (91.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9849_length_332_cov_35.213270:1-332 [pilon] Processing NODE_3075_length_858_cov_24.396201:1-858 [pilon] NODE_9384_length_351_cov_14.843478:1-351 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 87, Coverage: 7, minDepth: 5 [pilon] Confirmed 186 of 351 bases (52.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9384_length_351_cov_14.843478:1-351 [pilon] Processing NODE_2139_length_1049_cov_11.545259:1-1049 [pilon] NODE_10612_length_300_cov_25.100559:1-300 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 95, Coverage: 3, minDepth: 5 [pilon] Confirmed 111 of 300 bases (37.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10612_length_300_cov_25.100559:1-300 [pilon] Processing NODE_6030_length_538_cov_7.515588:1-538 [pilon] NODE_5862_length_551_cov_0.783721:1-551 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 71 of 551 bases (12.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5862_length_551_cov_0.783721:1-551 [pilon] Processing NODE_8451_length_396_cov_27.305455:1-396 [pilon] NODE_9916_length_329_cov_21.331731:1-329 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 99, Coverage: 12, minDepth: 5 [pilon] Confirmed 292 of 329 bases (88.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9916_length_329_cov_21.331731:1-329 [pilon] Processing NODE_6507_length_503_cov_19.853403:1-503 [pilon] NODE_3546_length_778_cov_1.986301:1-778 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 38, Coverage: 6, minDepth: 5 [pilon] Confirmed 429 of 778 bases (55.14%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3546_length_778_cov_1.986301:1-778 [pilon] Processing NODE_1861_length_1126_cov_2.677612:1-1126 [pilon] NODE_5964_length_544_cov_1.004728:1-544 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 139 of 544 bases (25.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5964_length_544_cov_1.004728:1-544 [pilon] Processing NODE_3474_length_788_cov_25.826087:1-788 [pilon] NODE_314_length_2210_cov_33.163236:1-2210 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 1704, Coverage: 75, minDepth: 19 [pilon] Confirmed 2000 of 2210 bases (90.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_314_length_2210_cov_33.163236:1-2210 [pilon] Processing NODE_5215_length_600_cov_21.296451:1-600 [pilon] NODE_3734_length_750_cov_17.688394:1-750 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 260, Coverage: 45, minDepth: 11 [pilon] Confirmed 594 of 750 bases (79.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3734_length_750_cov_17.688394:1-750 [pilon] NODE_14366_length_243_cov_11.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_10692_length_298_cov_18.480226:1-298 [pilon] Finished processing NODE_14366_length_243_cov_11.319672:1-243 [pilon] Processing NODE_12119_length_243_cov_44.155738:1-243 [pilon] NODE_6832_length_481_cov_17.094444:1-481 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 172, Coverage: 14, minDepth: 5 [pilon] Confirmed 237 of 481 bases (49.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6832_length_481_cov_17.094444:1-481 [pilon] Processing NODE_15202_length_158_cov_8.324324:1-158 [pilon] NODE_5579_length_572_cov_18.527716:1-572 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 190, Coverage: 13, minDepth: 5 [pilon] Confirmed 395 of 572 bases (69.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5579_length_572_cov_18.527716:1-572 [pilon] Processing NODE_9649_length_339_cov_24.674312:1-339 [pilon] NODE_14815_length_243_cov_7.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14815_length_243_cov_7.573770:1-243 [pilon] Processing NODE_4635_length_649_cov_3.439394:1-649 [pilon] NODE_12699_length_243_cov_26.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12699_length_243_cov_26.237705:1-243 [pilon] Processing NODE_13083_length_243_cov_22.098361:1-243 [pilon] NODE_8866_length_374_cov_4.110672:1-374 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 41, Coverage: 4, minDepth: 5 [pilon] Confirmed 171 of 374 bases (45.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8866_length_374_cov_4.110672:1-374 [pilon] Processing NODE_6644_length_494_cov_32.541555:1-494 [pilon] NODE_551_length_1857_cov_11.892281:1-1857 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 487, Coverage: 32, minDepth: 8 [pilon] Confirmed 1509 of 1857 bases (81.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_551_length_1857_cov_11.892281:1-1857 [pilon] Processing NODE_13350_length_243_cov_19.836066:1-243 [pilon] NODE_312_length_2216_cov_12.433890:1-2216 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 664, Coverage: 31, minDepth: 8 [pilon] Confirmed 1908 of 2216 bases (86.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_312_length_2216_cov_12.433890:1-2216 [pilon] Processing NODE_14392_length_243_cov_11.122951:1-243 [pilon] NODE_3860_length_732_cov_43.911620:1-732 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 617, Coverage: 74, minDepth: 19 [pilon] Confirmed 555 of 732 bases (75.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3860_length_732_cov_43.911620:1-732 [pilon] Processing NODE_9718_length_337_cov_18.162037:1-337 [pilon] NODE_7742_length_430_cov_10.944984:1-430 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 80, Coverage: 8, minDepth: 5 [pilon] Confirmed 257 of 430 bases (59.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7742_length_430_cov_10.944984:1-430 [pilon] Processing NODE_5201_length_601_cov_37.939583:1-601 [pilon] NODE_5451_length_580_cov_30.206972:1-580 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 325, Coverage: 38, minDepth: 10 [pilon] Confirmed 472 of 580 bases (81.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5451_length_580_cov_30.206972:1-580 [pilon] NODE_2680_length_932_cov_16.358816:1-932 log: [pilon] Processing NODE_6332_length_515_cov_1.784264:1-515 [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 289, Coverage: 33, minDepth: 8 [pilon] Confirmed 846 of 932 bases (90.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2680_length_932_cov_16.358816:1-932 [pilon] Processing NODE_3613_length_767_cov_5.171827:1-767 [pilon] NODE_6275_length_519_cov_25.520101:1-519 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 221, Coverage: 26, minDepth: 7 [pilon] Confirmed 465 of 519 bases (89.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6275_length_519_cov_25.520101:1-519 [pilon] Processing NODE_7699_length_432_cov_22.353698:1-432 [pilon] NODE_8858_length_374_cov_20.770751:1-374 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 143, Coverage: 26, minDepth: 7 [pilon] Confirmed 292 of 374 bases (78.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8858_length_374_cov_20.770751:1-374 [pilon] Processing NODE_14190_length_243_cov_12.696721:1-243 [pilon] NODE_14501_length_243_cov_10.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14501_length_243_cov_10.278689:1-243 [pilon] Processing NODE_12671_length_243_cov_26.565574:1-243 [pilon] NODE_5050_length_615_cov_2.261134:1-615 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 47, Coverage: 9, minDepth: 5 [pilon] Confirmed 463 of 615 bases (75.28%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5050_length_615_cov_2.261134:1-615 [pilon] Processing NODE_4748_length_639_cov_20.231660:1-639 [pilon] NODE_2180_length_1039_cov_1.620915:1-1039 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 47, Coverage: 5, minDepth: 5 [pilon] Confirmed 579 of 1039 bases (55.73%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2180_length_1039_cov_1.620915:1-1039 [pilon] Processing NODE_2575_length_951_cov_18.179518:1-951 [pilon] NODE_3075_length_858_cov_24.396201:1-858 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 429, Coverage: 32, minDepth: 8 [pilon] Confirmed 641 of 858 bases (74.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3075_length_858_cov_24.396201:1-858 [pilon] Processing NODE_8573_length_390_cov_10.691450:1-390 [pilon] NODE_2628_length_942_cov_1.058465:1-942 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 33, Coverage: 4, minDepth: 5 [pilon] Confirmed 496 of 942 bases (52.65%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2628_length_942_cov_1.058465:1-942 [pilon] Processing NODE_14240_length_243_cov_12.319672:1-243 [pilon] NODE_6030_length_538_cov_7.515588:1-538 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 90, Coverage: 7, minDepth: 5 [pilon] Confirmed 317 of 538 bases (58.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6030_length_538_cov_7.515588:1-538 [pilon] Processing NODE_13162_length_243_cov_21.434426:1-243 [pilon] NODE_6507_length_503_cov_19.853403:1-503 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 177, Coverage: 26, minDepth: 7 [pilon] Confirmed 421 of 503 bases (83.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6507_length_503_cov_19.853403:1-503 [pilon] Processing NODE_1773_length_1155_cov_6.581238:1-1155 [pilon] NODE_4101_length_705_cov_2.597603:1-705 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 45, Coverage: 8, minDepth: 5 [pilon] Confirmed 460 of 705 bases (65.25%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4101_length_705_cov_2.597603:1-705 [pilon] Processing NODE_12753_length_243_cov_25.524590:1-243 [pilon] NODE_2139_length_1049_cov_11.545259:1-1049 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 289, Coverage: 21, minDepth: 5 [pilon] Confirmed 838 of 1049 bases (79.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2139_length_1049_cov_11.545259:1-1049 [pilon] Processing NODE_2119_length_1053_cov_29.762876:1-1053 [pilon] NODE_8451_length_396_cov_27.305455:1-396 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 172, Coverage: 22, minDepth: 6 [pilon] Confirmed 348 of 396 bases (87.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8451_length_396_cov_27.305455:1-396 [pilon] Processing NODE_8725_length_381_cov_14.911538:1-381 [pilon] NODE_1861_length_1126_cov_2.677612:1-1126 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 79, Coverage: 9, minDepth: 5 [pilon] Confirmed 774 of 1126 bases (68.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1861_length_1126_cov_2.677612:1-1126 [pilon] Processing NODE_13663_length_243_cov_16.836066:1-243 [pilon] NODE_13350_length_243_cov_19.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13350_length_243_cov_19.836066:1-243 [pilon] Processing NODE_6390_length_511_cov_11.043590:1-511 [pilon] NODE_3474_length_788_cov_25.826087:1-788 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 424, Coverage: 46, minDepth: 12 [pilon] Confirmed 645 of 788 bases (81.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3474_length_788_cov_25.826087:1-788 [pilon] Processing NODE_2599_length_945_cov_22.424757:1-945 [pilon] NODE_4635_length_649_cov_3.439394:1-649 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 38, Coverage: 8, minDepth: 5 [pilon] Confirmed 407 of 649 bases (62.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4635_length_649_cov_3.439394:1-649 [pilon] Processing NODE_11304_length_271_cov_21.326667:1-271 [pilon] NODE_5215_length_600_cov_21.296451:1-600 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 238, Coverage: 23, minDepth: 6 [pilon] Confirmed 339 of 600 bases (56.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5215_length_600_cov_21.296451:1-600 [pilon] Processing NODE_7397_length_448_cov_18.406728:1-448 [pilon] NODE_12119_length_243_cov_44.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12119_length_243_cov_44.155738:1-243 [pilon] Processing NODE_189_length_2546_cov_12.903918:1-2546 [pilon] NODE_10692_length_298_cov_18.480226:1-298 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 62, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 298 bases (43.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10692_length_298_cov_18.480226:1-298 [pilon] Processing NODE_978_length_1511_cov_1.616547:1-1511 [pilon] NODE_9649_length_339_cov_24.674312:1-339 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 112, Coverage: 3, minDepth: 5 [pilon] Confirmed 109 of 339 bases (32.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9649_length_339_cov_24.674312:1-339 [pilon] Processing NODE_1461_length_1278_cov_4.057908:1-1278 [pilon] NODE_15202_length_158_cov_8.324324:1-158 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 158 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15202_length_158_cov_8.324324:1-158 [pilon] Processing NODE_12737_length_243_cov_25.729508:1-243 [pilon] NODE_13083_length_243_cov_22.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13083_length_243_cov_22.098361:1-243 [pilon] Processing NODE_2604_length_945_cov_2.627427:1-945 [pilon] NODE_6644_length_494_cov_32.541555:1-494 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 247, Coverage: 30, minDepth: 8 [pilon] Confirmed 318 of 494 bases (64.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6644_length_494_cov_32.541555:1-494 [pilon] Processing NODE_12813_length_243_cov_24.893443:1-243 [pilon] NODE_9718_length_337_cov_18.162037:1-337 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 85, Coverage: 5, minDepth: 5 [pilon] Confirmed 142 of 337 bases (42.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9718_length_337_cov_18.162037:1-337 [pilon] Processing NODE_9472_length_347_cov_22.026549:1-347 [pilon] NODE_14392_length_243_cov_11.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14392_length_243_cov_11.122951:1-243 [pilon] Processing NODE_12752_length_243_cov_25.565574:1-243 [pilon] NODE_5201_length_601_cov_37.939583:1-601 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 413, Coverage: 57, minDepth: 14 [pilon] Confirmed 488 of 601 bases (81.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5201_length_601_cov_37.939583:1-601 [pilon] Processing NODE_5884_length_549_cov_12.296729:1-549 [pilon] NODE_3613_length_767_cov_5.171827:1-767 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 86, Coverage: 13, minDepth: 5 [pilon] Confirmed 626 of 767 bases (81.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3613_length_767_cov_5.171827:1-767 [pilon] Processing NODE_11604_length_260_cov_10.741007:1-260 [pilon] NODE_6332_length_515_cov_1.784264:1-515 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 32, Coverage: 8, minDepth: 5 [pilon] Confirmed 412 of 515 bases (80.00%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6332_length_515_cov_1.784264:1-515 [pilon] Processing NODE_2056_length_1070_cov_20.198103:1-1070 [pilon] NODE_4748_length_639_cov_20.231660:1-639 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 324, Coverage: 52, minDepth: 13 [pilon] Confirmed 455 of 639 bases (71.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4748_length_639_cov_20.231660:1-639 [pilon] Processing NODE_7130_length_464_cov_12.160350:1-464 [pilon] NODE_2575_length_951_cov_18.179518:1-951 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 353, Coverage: 32, minDepth: 8 [pilon] Confirmed 735 of 951 bases (77.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2575_length_951_cov_18.179518:1-951 [pilon] Processing NODE_12035_length_246_cov_9.328000:1-246 [pilon] NODE_14190_length_243_cov_12.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14190_length_243_cov_12.696721:1-243 [pilon] Processing NODE_4537_length_658_cov_2.461825:1-658 [pilon] NODE_7699_length_432_cov_22.353698:1-432 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 143, Coverage: 25, minDepth: 6 [pilon] Confirmed 350 of 432 bases (81.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7699_length_432_cov_22.353698:1-432 [pilon] Processing NODE_10774_length_294_cov_19.716763:1-294 [pilon] NODE_12671_length_243_cov_26.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12671_length_243_cov_26.565574:1-243 [pilon] Processing NODE_11407_length_267_cov_16.753425:1-267 [pilon] NODE_13162_length_243_cov_21.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13162_length_243_cov_21.434426:1-243 [pilon] Processing NODE_5065_length_613_cov_23.650407:1-613 [pilon] NODE_8573_length_390_cov_10.691450:1-390 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 64, Coverage: 6, minDepth: 5 [pilon] Confirmed 206 of 390 bases (52.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8573_length_390_cov_10.691450:1-390 [pilon] Processing NODE_12627_length_243_cov_27.213115:1-243 [pilon] NODE_8725_length_381_cov_14.911538:1-381 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 94, Coverage: 15, minDepth: 5 [pilon] Confirmed 308 of 381 bases (80.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8725_length_381_cov_14.911538:1-381 [pilon] Processing NODE_5351_length_588_cov_17.186296:1-588 [pilon] NODE_14240_length_243_cov_12.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14240_length_243_cov_12.319672:1-243 [pilon] Processing NODE_14410_length_243_cov_11.008197:1-243 [pilon] NODE_1773_length_1155_cov_6.581238:1-1155 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 202, Coverage: 15, minDepth: 5 [pilon] Confirmed 963 of 1155 bases (83.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1773_length_1155_cov_6.581238:1-1155 [pilon] Processing NODE_3779_length_743_cov_15.852090:1-743 [pilon] NODE_12753_length_243_cov_25.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12753_length_243_cov_25.524590:1-243 [pilon] Processing NODE_13314_length_243_cov_20.122951:1-243 [pilon] NODE_2119_length_1053_cov_29.762876:1-1053 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 675, Coverage: 68, minDepth: 17 [pilon] Confirmed 938 of 1053 bases (89.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2119_length_1053_cov_29.762876:1-1053 [pilon] Processing NODE_6298_length_518_cov_16.012594:1-518 [pilon] NODE_13663_length_243_cov_16.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13663_length_243_cov_16.836066:1-243 [pilon] Processing NODE_4544_length_657_cov_33.020522:1-657 [pilon] NODE_1461_length_1278_cov_4.057908:1-1278 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 117, Coverage: 12, minDepth: 5 [pilon] Confirmed 998 of 1278 bases (78.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1461_length_1278_cov_4.057908:1-1278 [pilon] Processing NODE_6036_length_537_cov_31.016827:1-537 [pilon] NODE_11304_length_271_cov_21.326667:1-271 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 78, Coverage: 4, minDepth: 5 [pilon] Confirmed 92 of 271 bases (33.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11304_length_271_cov_21.326667:1-271 [pilon] Processing NODE_10849_length_290_cov_30.952663:1-290 [pilon] NODE_6390_length_511_cov_11.043590:1-511 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 99, Coverage: 10, minDepth: 5 [pilon] Confirmed 369 of 511 bases (72.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6390_length_511_cov_11.043590:1-511 [pilon] Processing NODE_14457_length_243_cov_10.631148:1-243 [pilon] NODE_7397_length_448_cov_18.406728:1-448 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 141, Coverage: 24, minDepth: 6 [pilon] Confirmed 381 of 448 bases (85.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7397_length_448_cov_18.406728:1-448 [pilon] Processing NODE_6796_length_483_cov_18.099448:1-483 [pilon] NODE_2599_length_945_cov_22.424757:1-945 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 412, Coverage: 39, minDepth: 10 [pilon] Confirmed 827 of 945 bases (87.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2599_length_945_cov_22.424757:1-945 [pilon] Processing NODE_3583_length_771_cov_19.432308:1-771 [pilon] NODE_12737_length_243_cov_25.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12737_length_243_cov_25.729508:1-243 [pilon] Processing NODE_3970_length_718_cov_2.480737:1-718 [pilon] NODE_12813_length_243_cov_24.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12813_length_243_cov_24.893443:1-243 [pilon] Processing NODE_3470_length_789_cov_2.378743:1-789 [pilon] NODE_978_length_1511_cov_1.616547:1-1511 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 68, Coverage: 6, minDepth: 5 [pilon] Confirmed 831 of 1511 bases (55.00%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_978_length_1511_cov_1.616547:1-1511 [pilon] Processing NODE_8796_length_377_cov_57.964844:1-377 [pilon] NODE_9472_length_347_cov_22.026549:1-347 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 90, Coverage: 2, minDepth: 5 [pilon] Confirmed 109 of 347 bases (31.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9472_length_347_cov_22.026549:1-347 [pilon] Processing NODE_14338_length_243_cov_11.557377:1-243 [pilon] NODE_2604_length_945_cov_2.627427:1-945 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 56, Coverage: 8, minDepth: 5 [pilon] Confirmed 469 of 945 bases (49.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2604_length_945_cov_2.627427:1-945 [pilon] Processing NODE_5610_length_570_cov_1.224944:1-570 [pilon] NODE_12035_length_246_cov_9.328000:1-246 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12035_length_246_cov_9.328000:1-246 [pilon] Processing NODE_13950_length_243_cov_14.516393:1-243 [pilon] NODE_7130_length_464_cov_12.160350:1-464 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 105, Coverage: 13, minDepth: 5 [pilon] Confirmed 301 of 464 bases (64.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7130_length_464_cov_12.160350:1-464 [pilon] Processing NODE_14966_length_243_cov_5.909836:1-243 [pilon] NODE_12752_length_243_cov_25.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12752_length_243_cov_25.565574:1-243 [pilon] Processing NODE_926_length_1542_cov_21.565799:1-1542 [pilon] NODE_11604_length_260_cov_10.741007:1-260 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 29, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 260 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11604_length_260_cov_10.741007:1-260 [pilon] NODE_189_length_2546_cov_12.903918:1-2546 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 734, Coverage: 30, minDepth: 8 [pilon] Confirmed 1795 of 2546 bases (70.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_189_length_2546_cov_12.903918:1-2546 [pilon] Processing NODE_89_length_3099_cov_25.088650:1-3099 [pilon] Processing NODE_821_length_1613_cov_1.869973:1-1613 [pilon] NODE_5351_length_588_cov_17.186296:1-588 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 206, Coverage: 19, minDepth: 5 [pilon] Confirmed 545 of 588 bases (92.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5351_length_588_cov_17.186296:1-588 [pilon] Processing NODE_4274_length_684_cov_15.699822:1-684 [pilon] NODE_5884_length_549_cov_12.296729:1-549 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 136, Coverage: 13, minDepth: 5 [pilon] Confirmed 266 of 549 bases (48.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5884_length_549_cov_12.296729:1-549 [pilon] Processing NODE_10322_length_312_cov_21.408377:1-312 [pilon] NODE_10774_length_294_cov_19.716763:1-294 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 76, Coverage: 2, minDepth: 5 [pilon] Confirmed 90 of 294 bases (30.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10774_length_294_cov_19.716763:1-294 [pilon] Processing NODE_14834_length_243_cov_7.385246:1-243 [pilon] NODE_5065_length_613_cov_23.650407:1-613 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 271, Coverage: 41, minDepth: 10 [pilon] Confirmed 533 of 613 bases (86.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5065_length_613_cov_23.650407:1-613 [pilon] Processing NODE_3467_length_789_cov_18.236527:1-789 [pilon] NODE_4537_length_658_cov_2.461825:1-658 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 39, Coverage: 7, minDepth: 5 [pilon] Confirmed 401 of 658 bases (60.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4537_length_658_cov_2.461825:1-658 [pilon] Processing NODE_8220_length_407_cov_67.559441:1-407 [pilon] NODE_11407_length_267_cov_16.753425:1-267 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 56, Coverage: 5, minDepth: 5 [pilon] Confirmed 164 of 267 bases (61.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11407_length_267_cov_16.753425:1-267 [pilon] Processing NODE_3336_length_807_cov_29.827988:1-807 [pilon] NODE_2056_length_1070_cov_20.198103:1-1070 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 481, Coverage: 49, minDepth: 12 [pilon] Confirmed 785 of 1070 bases (73.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2056_length_1070_cov_20.198103:1-1070 [pilon] Processing NODE_13480_length_243_cov_18.606557:1-243 [pilon] NODE_12627_length_243_cov_27.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12627_length_243_cov_27.213115:1-243 [pilon] Processing NODE_895_length_1564_cov_19.243243:1-1564 [pilon] NODE_6298_length_518_cov_16.012594:1-518 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 253, Coverage: 39, minDepth: 10 [pilon] Confirmed 376 of 518 bases (72.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6298_length_518_cov_16.012594:1-518 [pilon] Processing NODE_13218_length_243_cov_20.918033:1-243 [pilon] NODE_10849_length_290_cov_30.952663:1-290 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 123, Coverage: 10, minDepth: 5 [pilon] Confirmed 220 of 290 bases (75.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10849_length_290_cov_30.952663:1-290 [pilon] Processing NODE_3756_length_747_cov_2.137380:1-747 [pilon] NODE_14410_length_243_cov_11.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14410_length_243_cov_11.008197:1-243 [pilon] Processing NODE_8056_length_415_cov_12.023810:1-415 [pilon] NODE_14338_length_243_cov_11.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14338_length_243_cov_11.557377:1-243 [pilon] Processing NODE_2757_length_917_cov_16.783920:1-917 [pilon] NODE_3779_length_743_cov_15.852090:1-743 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 260, Coverage: 22, minDepth: 6 [pilon] Confirmed 527 of 743 bases (70.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3779_length_743_cov_15.852090:1-743 [pilon] Processing NODE_13550_length_243_cov_17.918033:1-243 [pilon] NODE_4544_length_657_cov_33.020522:1-657 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 404, Coverage: 61, minDepth: 15 [pilon] Confirmed 465 of 657 bases (70.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4544_length_657_cov_33.020522:1-657 [pilon] Processing NODE_4141_length_700_cov_0.799655:1-700 [pilon] NODE_13314_length_243_cov_20.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13314_length_243_cov_20.122951:1-243 [pilon] Processing NODE_700_length_1704_cov_1.828174:1-1704 [pilon] NODE_4274_length_684_cov_15.699822:1-684 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 221, Coverage: 23, minDepth: 6 [pilon] Confirmed 386 of 684 bases (56.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4274_length_684_cov_15.699822:1-684 [pilon] Processing NODE_13250_length_243_cov_20.639344:1-243 [pilon] NODE_14457_length_243_cov_10.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14457_length_243_cov_10.631148:1-243 [pilon] Processing NODE_2854_length_901_cov_9.248718:1-901 [pilon] NODE_3970_length_718_cov_2.480737:1-718 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 39, Coverage: 6, minDepth: 5 [pilon] Confirmed 434 of 718 bases (60.45%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3970_length_718_cov_2.480737:1-718 [pilon] Processing NODE_126_length_2847_cov_23.228540:1-2847 [pilon] NODE_6796_length_483_cov_18.099448:1-483 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 151, Coverage: 15, minDepth: 5 [pilon] Confirmed 265 of 483 bases (54.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6796_length_483_cov_18.099448:1-483 [pilon] Processing NODE_6064_length_534_cov_24.138015:1-534 [pilon] NODE_6036_length_537_cov_31.016827:1-537 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 290, Coverage: 41, minDepth: 10 [pilon] Confirmed 437 of 537 bases (81.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6036_length_537_cov_31.016827:1-537 [pilon] Processing NODE_8922_length_370_cov_8.839357:1-370 [pilon] NODE_8796_length_377_cov_57.964844:1-377 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 337, Coverage: 56, minDepth: 14 [pilon] Confirmed 320 of 377 bases (84.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8796_length_377_cov_57.964844:1-377 [pilon] Processing NODE_10228_length_315_cov_30.865979:1-315 [pilon] NODE_3583_length_771_cov_19.432308:1-771 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 290, Coverage: 31, minDepth: 8 [pilon] Confirmed 608 of 771 bases (78.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3583_length_771_cov_19.432308:1-771 [pilon] Processing NODE_5827_length_553_cov_62.064815:1-553 [pilon] NODE_3470_length_789_cov_2.378743:1-789 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 48, Coverage: 7, minDepth: 5 [pilon] Confirmed 436 of 789 bases (55.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3470_length_789_cov_2.378743:1-789 [pilon] Processing NODE_14384_length_243_cov_11.180328:1-243 [pilon] NODE_14966_length_243_cov_5.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14966_length_243_cov_5.909836:1-243 [pilon] Processing NODE_2781_length_912_cov_30.920354:1-912 [pilon] NODE_5610_length_570_cov_1.224944:1-570 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 31, Coverage: 4, minDepth: 5 [pilon] Confirmed 263 of 570 bases (46.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5610_length_570_cov_1.224944:1-570 [pilon] Processing NODE_14510_length_243_cov_10.254098:1-243 [pilon] NODE_13950_length_243_cov_14.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13950_length_243_cov_14.516393:1-243 [pilon] Processing NODE_3487_length_787_cov_3.408408:1-787 [pilon] NODE_926_length_1542_cov_21.565799:1-1542 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 735, Coverage: 47, minDepth: 12 [pilon] Confirmed 1126 of 1542 bases (73.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_926_length_1542_cov_21.565799:1-1542 [pilon] Processing NODE_2002_length_1086_cov_23.687047:1-1086 [pilon] NODE_821_length_1613_cov_1.869973:1-1613 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 89, Coverage: 7, minDepth: 5 [pilon] Confirmed 1156 of 1613 bases (71.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_821_length_1613_cov_1.869973:1-1613 [pilon] Processing NODE_5085_length_611_cov_27.067347:1-611 [pilon] NODE_10322_length_312_cov_21.408377:1-312 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 105, Coverage: 11, minDepth: 5 [pilon] Confirmed 246 of 312 bases (78.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10322_length_312_cov_21.408377:1-312 [pilon] Processing NODE_5715_length_562_cov_14.029478:1-562 [pilon] NODE_14834_length_243_cov_7.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14834_length_243_cov_7.385246:1-243 [pilon] Processing NODE_5604_length_570_cov_19.013363:1-570 [pilon] NODE_89_length_3099_cov_25.088650:1-3099 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 1726, Coverage: 68, minDepth: 17 [pilon] Confirmed 2984 of 3099 bases (96.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_89_length_3099_cov_25.088650:1-3099 [pilon] Processing NODE_4819_length_633_cov_2.884766:1-633 [pilon] NODE_8056_length_415_cov_12.023810:1-415 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 88, Coverage: 14, minDepth: 5 [pilon] Confirmed 337 of 415 bases (81.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8056_length_415_cov_12.023810:1-415 [pilon] Processing NODE_1699_length_1180_cov_14.237960:1-1180 [pilon] NODE_4141_length_700_cov_0.799655:1-700 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 17, Coverage: 2, minDepth: 5 [pilon] Confirmed 30 of 700 bases (4.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4141_length_700_cov_0.799655:1-700 [pilon] Processing NODE_2411_length_989_cov_1.860599:1-989 [pilon] NODE_2757_length_917_cov_16.783920:1-917 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 350, Coverage: 34, minDepth: 9 [pilon] Confirmed 704 of 917 bases (76.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2757_length_917_cov_16.783920:1-917 [pilon] Processing NODE_11567_length_261_cov_24.457143:1-261 [pilon] NODE_3336_length_807_cov_29.827988:1-807 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 477, Coverage: 62, minDepth: 16 [pilon] Confirmed 722 of 807 bases (89.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_3467_length_789_cov_18.236527:1-789 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 293, Coverage: 29, minDepth: 7 [pilon] Confirmed 691 of 789 bases (87.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3336_length_807_cov_29.827988:1-807 [pilon] Finished processing NODE_3467_length_789_cov_18.236527:1-789 [pilon] Processing NODE_9030_length_365_cov_13.950820:1-365 [pilon] Processing NODE_2160_length_1042_cov_23.821933:1-1042 [pilon] NODE_8220_length_407_cov_67.559441:1-407 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 414, Coverage: 75, minDepth: 19 [pilon] Confirmed 357 of 407 bases (87.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8220_length_407_cov_67.559441:1-407 [pilon] Processing NODE_675_length_1723_cov_22.230337:1-1723 [pilon] NODE_13480_length_243_cov_18.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13480_length_243_cov_18.606557:1-243 [pilon] Processing NODE_4099_length_705_cov_3.046233:1-705 [pilon] NODE_3756_length_747_cov_2.137380:1-747 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 44, Coverage: 2, minDepth: 5 [pilon] Confirmed 148 of 747 bases (19.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3756_length_747_cov_2.137380:1-747 [pilon] Processing NODE_8702_length_382_cov_15.639847:1-382 [pilon] NODE_895_length_1564_cov_19.243243:1-1564 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 719, Coverage: 49, minDepth: 12 [pilon] Confirmed 1338 of 1564 bases (85.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_895_length_1564_cov_19.243243:1-1564 [pilon] Processing NODE_14748_length_243_cov_8.122951:1-243 [pilon] NODE_13218_length_243_cov_20.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13218_length_243_cov_20.918033:1-243 [pilon] Processing NODE_13327_length_243_cov_20.016393:1-243 [pilon] NODE_13250_length_243_cov_20.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13250_length_243_cov_20.639344:1-243 [pilon] Processing NODE_13516_length_243_cov_18.229508:1-243 [pilon] NODE_13550_length_243_cov_17.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13550_length_243_cov_17.918033:1-243 [pilon] Processing NODE_3524_length_780_cov_17.261002:1-780 [pilon] NODE_700_length_1704_cov_1.828174:1-1704 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 103, Coverage: 8, minDepth: 5 [pilon] Confirmed 1350 of 1704 bases (79.23%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_700_length_1704_cov_1.828174:1-1704 [pilon] Processing NODE_4334_length_677_cov_33.325540:1-677 [pilon] NODE_2854_length_901_cov_9.248718:1-901 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 190, Coverage: 15, minDepth: 5 [pilon] Confirmed 674 of 901 bases (74.81%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2854_length_901_cov_9.248718:1-901 [pilon] Processing NODE_10903_length_288_cov_19.323353:1-288 [pilon] NODE_8922_length_370_cov_8.839357:1-370 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 57, Coverage: 6, minDepth: 5 [pilon] Confirmed 214 of 370 bases (57.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8922_length_370_cov_8.839357:1-370 [pilon] Processing NODE_14479_length_243_cov_10.418033:1-243 [pilon] NODE_10228_length_315_cov_30.865979:1-315 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 124, Coverage: 8, minDepth: 5 [pilon] Confirmed 203 of 315 bases (64.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10228_length_315_cov_30.865979:1-315 [pilon] Processing NODE_4202_length_693_cov_56.391608:1-693 [pilon] NODE_14384_length_243_cov_11.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14384_length_243_cov_11.180328:1-243 [pilon] Processing NODE_13839_length_243_cov_15.360656:1-243 [pilon] NODE_1699_length_1180_cov_14.237960:1-1180 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 369, Coverage: 36, minDepth: 9 [pilon] Confirmed 1026 of 1180 bases (86.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1699_length_1180_cov_14.237960:1-1180 [pilon] Processing NODE_352_length_2119_cov_26.080581:1-2119 [pilon] NODE_14510_length_243_cov_10.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14510_length_243_cov_10.254098:1-243 [pilon] Processing NODE_4305_length_681_cov_1.357143:1-681 [pilon] NODE_4819_length_633_cov_2.884766:1-633 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 53, Coverage: 8, minDepth: 5 [pilon] Confirmed 483 of 633 bases (76.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4819_length_633_cov_2.884766:1-633 [pilon] Processing NODE_7622_length_436_cov_24.076190:1-436 [pilon] NODE_6064_length_534_cov_24.138015:1-534 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 214, Coverage: 23, minDepth: 6 [pilon] Confirmed 324 of 534 bases (60.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6064_length_534_cov_24.138015:1-534 [pilon] Processing NODE_5737_length_560_cov_21.473804:1-560 [pilon] NODE_5827_length_553_cov_62.064815:1-553 log: [pilon] frags shovill.bam: coverage 111 [pilon] Total Reads: 618, Coverage: 111, minDepth: 28 [pilon] Confirmed 477 of 553 bases (86.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5827_length_553_cov_62.064815:1-553 [pilon] Processing NODE_6571_length_499_cov_0.849206:1-499 [pilon] NODE_2002_length_1086_cov_23.687047:1-1086 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 613, Coverage: 54, minDepth: 14 [pilon] Confirmed 1035 of 1086 bases (95.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2002_length_1086_cov_23.687047:1-1086 [pilon] Processing NODE_1786_length_1151_cov_22.698058:1-1151 [pilon] NODE_3487_length_787_cov_3.408408:1-787 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 63, Coverage: 10, minDepth: 5 [pilon] Confirmed 596 of 787 bases (75.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3487_length_787_cov_3.408408:1-787 [pilon] Processing NODE_9669_length_339_cov_15.435780:1-339 [pilon] NODE_4099_length_705_cov_3.046233:1-705 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 46, Coverage: 8, minDepth: 5 [pilon] Confirmed 454 of 705 bases (64.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4099_length_705_cov_3.046233:1-705 [pilon] Processing NODE_8802_length_377_cov_16.437500:1-377 [pilon] NODE_2781_length_912_cov_30.920354:1-912 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 573, Coverage: 48, minDepth: 12 [pilon] Confirmed 727 of 912 bases (79.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2781_length_912_cov_30.920354:1-912 [pilon] Processing NODE_14303_length_243_cov_11.819672:1-243 [pilon] NODE_5085_length_611_cov_27.067347:1-611 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 304, Coverage: 21, minDepth: 5 [pilon] Confirmed 406 of 611 bases (66.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5085_length_611_cov_27.067347:1-611 [pilon] Processing NODE_12229_length_243_cov_35.409836:1-243 [pilon] NODE_126_length_2847_cov_23.228540:1-2847 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 1510, Coverage: 65, minDepth: 16 [pilon] Confirmed 2695 of 2847 bases (94.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_126_length_2847_cov_23.228540:1-2847 [pilon] Processing NODE_1070_length_1456_cov_1.483895:1-1456 [pilon] NODE_13516_length_243_cov_18.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13516_length_243_cov_18.229508:1-243 [pilon] Processing NODE_12964_length_243_cov_23.319672:1-243 [pilon] NODE_5604_length_570_cov_19.013363:1-570 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 234, Coverage: 30, minDepth: 8 [pilon] Confirmed 511 of 570 bases (89.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5604_length_570_cov_19.013363:1-570 [pilon] Processing NODE_10693_length_298_cov_15.757062:1-298 [pilon] NODE_5715_length_562_cov_14.029478:1-562 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 137, Coverage: 17, minDepth: 5 [pilon] Confirmed 419 of 562 bases (74.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5715_length_562_cov_14.029478:1-562 [pilon] Processing NODE_15192_length_162_cov_68.439024:1-162 [pilon] NODE_2411_length_989_cov_1.860599:1-989 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 55, Coverage: 6, minDepth: 5 [pilon] Confirmed 698 of 989 bases (70.58%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2411_length_989_cov_1.860599:1-989 [pilon] Processing NODE_9621_length_341_cov_14.831818:1-341 [pilon] NODE_11567_length_261_cov_24.457143:1-261 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 66, Coverage: 5, minDepth: 5 [pilon] Confirmed 135 of 261 bases (51.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11567_length_261_cov_24.457143:1-261 [pilon] Processing NODE_12445_length_243_cov_30.065574:1-243 [pilon] NODE_9030_length_365_cov_13.950820:1-365 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 84, Coverage: 7, minDepth: 5 [pilon] Confirmed 283 of 365 bases (77.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9030_length_365_cov_13.950820:1-365 [pilon] Processing NODE_174_length_2588_cov_17.717065:1-2588 [pilon] NODE_2160_length_1042_cov_23.821933:1-1042 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 499, Coverage: 44, minDepth: 11 [pilon] Confirmed 818 of 1042 bases (78.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2160_length_1042_cov_23.821933:1-1042 [pilon] Processing NODE_3650_length_762_cov_2.552262:1-762 [pilon] NODE_8702_length_382_cov_15.639847:1-382 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 91, Coverage: 20, minDepth: 5 [pilon] Confirmed 335 of 382 bases (87.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8702_length_382_cov_15.639847:1-382 [pilon] Processing NODE_7596_length_438_cov_7.861199:1-438 [pilon] NODE_13327_length_243_cov_20.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13327_length_243_cov_20.016393:1-243 [pilon] NODE_14748_length_243_cov_8.122951:1-243 log: [pilon] Processing NODE_7797_length_428_cov_0.644951:1-428 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14748_length_243_cov_8.122951:1-243 [pilon] Processing NODE_8894_length_372_cov_19.270916:1-372 [pilon] NODE_675_length_1723_cov_22.230337:1-1723 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 829, Coverage: 45, minDepth: 11 [pilon] Confirmed 1509 of 1723 bases (87.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_675_length_1723_cov_22.230337:1-1723 [pilon] Processing NODE_8293_length_405_cov_7.580986:1-405 [pilon] NODE_7622_length_436_cov_24.076190:1-436 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 141, Coverage: 16, minDepth: 5 [pilon] Confirmed 284 of 436 bases (65.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7622_length_436_cov_24.076190:1-436 [pilon] Processing NODE_7373_length_450_cov_8.218845:1-450 [pilon] NODE_5737_length_560_cov_21.473804:1-560 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 194, Coverage: 37, minDepth: 9 [pilon] Confirmed 428 of 560 bases (76.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5737_length_560_cov_21.473804:1-560 [pilon] Processing NODE_10045_length_324_cov_7.793103:1-324 [pilon] NODE_3524_length_780_cov_17.261002:1-780 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 309, Coverage: 25, minDepth: 6 [pilon] Confirmed 518 of 780 bases (66.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3524_length_780_cov_17.261002:1-780 [pilon] Processing NODE_5452_length_580_cov_27.387800:1-580 [pilon] NODE_8802_length_377_cov_16.437500:1-377 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 95, Coverage: 10, minDepth: 5 [pilon] Confirmed 313 of 377 bases (83.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8802_length_377_cov_16.437500:1-377 [pilon] Processing NODE_7140_length_463_cov_3.035088:1-463 [pilon] NODE_4334_length_677_cov_33.325540:1-677 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 429, Coverage: 55, minDepth: 14 [pilon] Confirmed 532 of 677 bases (78.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4334_length_677_cov_33.325540:1-677 [pilon] Processing NODE_9917_length_329_cov_21.028846:1-329 [pilon] NODE_12964_length_243_cov_23.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12964_length_243_cov_23.319672:1-243 [pilon] Processing NODE_335_length_2146_cov_15.365432:1-2146 [pilon] NODE_10903_length_288_cov_19.323353:1-288 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 66, Coverage: 8, minDepth: 5 [pilon] Confirmed 197 of 288 bases (68.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10903_length_288_cov_19.323353:1-288 [pilon] Processing NODE_8253_length_406_cov_14.578947:1-406 [pilon] NODE_14479_length_243_cov_10.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14479_length_243_cov_10.418033:1-243 [pilon] Processing NODE_2581_length_950_cov_21.376357:1-950 [pilon] NODE_4202_length_693_cov_56.391608:1-693 log: [pilon] frags shovill.bam: coverage 103 [pilon] Total Reads: 740, Coverage: 103, minDepth: 26 [pilon] Confirmed 622 of 693 bases (89.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4202_length_693_cov_56.391608:1-693 [pilon] Processing NODE_1613_length_1212_cov_20.554537:1-1212 [pilon] NODE_4305_length_681_cov_1.357143:1-681 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 37, Coverage: 6, minDepth: 5 [pilon] Confirmed 414 of 681 bases (60.79%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4305_length_681_cov_1.357143:1-681 [pilon] Processing NODE_14356_length_243_cov_11.401639:1-243 [pilon] NODE_13839_length_243_cov_15.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13839_length_243_cov_15.360656:1-243 [pilon] Processing NODE_9401_length_350_cov_28.720524:1-350 [pilon] NODE_6571_length_499_cov_0.849206:1-499 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 499 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6571_length_499_cov_0.849206:1-499 [pilon] Processing NODE_10313_length_312_cov_26.874346:1-312 [pilon] NODE_1786_length_1151_cov_22.698058:1-1151 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 541, Coverage: 35, minDepth: 9 [pilon] Confirmed 1105 of 1151 bases (96.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1786_length_1151_cov_22.698058:1-1151 [pilon] Processing NODE_8810_length_376_cov_48.160784:1-376 [pilon] NODE_352_length_2119_cov_26.080581:1-2119 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 1222, Coverage: 63, minDepth: 16 [pilon] Confirmed 1712 of 2119 bases (80.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_352_length_2119_cov_26.080581:1-2119 [pilon] Processing NODE_8897_length_372_cov_16.685259:1-372 [pilon] NODE_9669_length_339_cov_15.435780:1-339 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 77, Coverage: 9, minDepth: 5 [pilon] Confirmed 257 of 339 bases (75.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9669_length_339_cov_15.435780:1-339 [pilon] Processing NODE_7317_length_452_cov_38.489426:1-452 [pilon] NODE_14303_length_243_cov_11.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14303_length_243_cov_11.819672:1-243 [pilon] Processing NODE_4025_length_713_cov_14.555743:1-713 [pilon] NODE_1070_length_1456_cov_1.483895:1-1456 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 69, Coverage: 6, minDepth: 5 [pilon] Confirmed 732 of 1456 bases (50.27%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1070_length_1456_cov_1.483895:1-1456 [pilon] Processing NODE_3254_length_823_cov_20.924501:1-823 [pilon] NODE_12229_length_243_cov_35.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12229_length_243_cov_35.409836:1-243 [pilon] Processing NODE_11277_length_273_cov_11.947368:1-273 [pilon] NODE_10693_length_298_cov_15.757062:1-298 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 60, Coverage: 3, minDepth: 5 [pilon] Confirmed 91 of 298 bases (30.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10693_length_298_cov_15.757062:1-298 [pilon] Processing NODE_13213_length_243_cov_20.967213:1-243 [pilon] NODE_15192_length_162_cov_68.439024:1-162 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 162 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15192_length_162_cov_68.439024:1-162 [pilon] Processing NODE_1626_length_1209_cov_0.704044:1-1209 [pilon] NODE_10045_length_324_cov_7.793103:1-324 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 35, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 324 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10045_length_324_cov_7.793103:1-324 [pilon] Processing NODE_5679_length_564_cov_24.139955:1-564 [pilon] NODE_9621_length_341_cov_14.831818:1-341 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 241 of 341 bases (70.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9621_length_341_cov_14.831818:1-341 [pilon] Processing NODE_10651_length_300_cov_11.033520:1-300 [pilon] NODE_3650_length_762_cov_2.552262:1-762 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 48, Coverage: 8, minDepth: 5 [pilon] Confirmed 464 of 762 bases (60.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3650_length_762_cov_2.552262:1-762 [pilon] Processing NODE_7172_length_461_cov_12.879412:1-461 [pilon] NODE_7373_length_450_cov_8.218845:1-450 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 62, Coverage: 12, minDepth: 5 [pilon] Confirmed 341 of 450 bases (75.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7373_length_450_cov_8.218845:1-450 [pilon] Processing NODE_1378_length_1307_cov_1.967116:1-1307 [pilon] NODE_7596_length_438_cov_7.861199:1-438 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 57, Coverage: 3, minDepth: 5 [pilon] Confirmed 152 of 438 bases (34.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7596_length_438_cov_7.861199:1-438 [pilon] Processing NODE_10292_length_314_cov_6.715026:1-314 [pilon] NODE_12445_length_243_cov_30.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12445_length_243_cov_30.065574:1-243 [pilon] Processing NODE_9949_length_327_cov_32.349515:1-327 [pilon] NODE_7797_length_428_cov_0.644951:1-428 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 428 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7797_length_428_cov_0.644951:1-428 [pilon] Processing NODE_6002_length_540_cov_28.637232:1-540 [pilon] NODE_8293_length_405_cov_7.580986:1-405 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 54, Coverage: 11, minDepth: 5 [pilon] Confirmed 314 of 405 bases (77.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8293_length_405_cov_7.580986:1-405 [pilon] Processing NODE_13326_length_243_cov_20.040984:1-243 [pilon] NODE_7140_length_463_cov_3.035088:1-463 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 34, Coverage: 8, minDepth: 5 [pilon] Confirmed 356 of 463 bases (76.89%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7140_length_463_cov_3.035088:1-463 [pilon] Processing NODE_6591_length_498_cov_1.198939:1-498 [pilon] NODE_8894_length_372_cov_19.270916:1-372 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 108, Coverage: 12, minDepth: 5 [pilon] Confirmed 235 of 372 bases (63.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8894_length_372_cov_19.270916:1-372 [pilon] Processing NODE_13648_length_243_cov_17.065574:1-243 [pilon] NODE_174_length_2588_cov_17.717065:1-2588 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 1045, Coverage: 44, minDepth: 11 [pilon] Confirmed 2093 of 2588 bases (80.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_174_length_2588_cov_17.717065:1-2588 [pilon] Processing NODE_6233_length_522_cov_14.319202:1-522 [pilon] NODE_335_length_2146_cov_15.365432:1-2146 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 752, Coverage: 34, minDepth: 9 [pilon] Confirmed 1927 of 2146 bases (89.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_335_length_2146_cov_15.365432:1-2146 [pilon] Processing NODE_15170_length_177_cov_43.125000:1-177 [pilon] NODE_9917_length_329_cov_21.028846:1-329 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 107, Coverage: 11, minDepth: 5 [pilon] Confirmed 267 of 329 bases (81.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9917_length_329_cov_21.028846:1-329 [pilon] Processing NODE_13319_length_243_cov_20.090164:1-243 [pilon] NODE_5452_length_580_cov_27.387800:1-580 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 321, Coverage: 31, minDepth: 8 [pilon] Confirmed 440 of 580 bases (75.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5452_length_580_cov_27.387800:1-580 [pilon] Processing NODE_11809_length_252_cov_23.801527:1-252 [pilon] NODE_8253_length_406_cov_14.578947:1-406 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 90, Coverage: 15, minDepth: 5 [pilon] Confirmed 331 of 406 bases (81.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8253_length_406_cov_14.578947:1-406 [pilon] Processing NODE_11594_length_261_cov_6.557143:1-261 [pilon] NODE_14356_length_243_cov_11.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14356_length_243_cov_11.401639:1-243 [pilon] Processing NODE_6405_length_510_cov_12.969152:1-510 [pilon] NODE_1613_length_1212_cov_20.554537:1-1212 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 560, Coverage: 55, minDepth: 14 [pilon] Confirmed 1000 of 1212 bases (82.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1613_length_1212_cov_20.554537:1-1212 [pilon] Processing NODE_7365_length_450_cov_14.133739:1-450 [pilon] NODE_10313_length_312_cov_26.874346:1-312 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 104, Coverage: 11, minDepth: 5 [pilon] Confirmed 233 of 312 bases (74.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10313_length_312_cov_26.874346:1-312 [pilon] Processing NODE_5174_length_603_cov_33.634855:1-603 [pilon] NODE_8897_length_372_cov_16.685259:1-372 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 98, Coverage: 23, minDepth: 6 [pilon] Confirmed 319 of 372 bases (85.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8897_length_372_cov_16.685259:1-372 [pilon] Processing NODE_13014_length_243_cov_22.762295:1-243 [pilon] NODE_9401_length_350_cov_28.720524:1-350 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 149, Coverage: 5, minDepth: 5 [pilon] Confirmed 136 of 350 bases (38.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9401_length_350_cov_28.720524:1-350 [pilon] Processing NODE_5671_length_565_cov_20.822072:1-565 [pilon] NODE_8810_length_376_cov_48.160784:1-376 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 284, Coverage: 44, minDepth: 11 [pilon] Confirmed 337 of 376 bases (89.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8810_length_376_cov_48.160784:1-376 [pilon] NODE_2581_length_950_cov_21.376357:1-950 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 461, Coverage: 35, minDepth: 9 [pilon] Confirmed 736 of 950 bases (77.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2581_length_950_cov_21.376357:1-950 [pilon] Processing NODE_7046_length_468_cov_20.429395:1-468 [pilon] Processing NODE_11975_length_246_cov_29.984000:1-246 [pilon] NODE_5679_length_564_cov_24.139955:1-564 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 234, Coverage: 11, minDepth: 5 [pilon] Confirmed 359 of 564 bases (63.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5679_length_564_cov_24.139955:1-564 [pilon] Processing NODE_13012_length_243_cov_22.778689:1-243 [pilon] NODE_10651_length_300_cov_11.033520:1-300 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10651_length_300_cov_11.033520:1-300 [pilon] Processing NODE_8396_length_399_cov_37.665468:1-399 [pilon] NODE_7317_length_452_cov_38.489426:1-452 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 276, Coverage: 50, minDepth: 13 [pilon] Confirmed 390 of 452 bases (86.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7317_length_452_cov_38.489426:1-452 [pilon] Processing NODE_12978_length_243_cov_23.196721:1-243 [pilon] NODE_9949_length_327_cov_32.349515:1-327 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 137, Coverage: 13, minDepth: 5 [pilon] Confirmed 213 of 327 bases (65.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9949_length_327_cov_32.349515:1-327 [pilon] Processing NODE_13556_length_243_cov_17.852459:1-243 [pilon] NODE_4025_length_713_cov_14.555743:1-713 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 180, Coverage: 20, minDepth: 5 [pilon] Confirmed 576 of 713 bases (80.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4025_length_713_cov_14.555743:1-713 [pilon] Processing NODE_1342_length_1324_cov_11.333333:1-1324 [pilon] NODE_3254_length_823_cov_20.924501:1-823 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 343, Coverage: 43, minDepth: 11 [pilon] Confirmed 714 of 823 bases (86.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3254_length_823_cov_20.924501:1-823 [pilon] Processing NODE_5225_length_599_cov_5.338912:1-599 [pilon] NODE_13213_length_243_cov_20.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_11277_length_273_cov_11.947368:1-273 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 49, Coverage: 3, minDepth: 5 [pilon] Confirmed 76 of 273 bases (27.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13213_length_243_cov_20.967213:1-243 [pilon] Finished processing NODE_11277_length_273_cov_11.947368:1-273 [pilon] Processing NODE_14835_length_243_cov_7.377049:1-243 [pilon] Processing NODE_14804_length_243_cov_7.680328:1-243 [pilon] NODE_15170_length_177_cov_43.125000:1-177 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 41, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 177 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15170_length_177_cov_43.125000:1-177 [pilon] Processing NODE_28_length_4683_cov_15.093161:1-4683 [pilon] NODE_1626_length_1209_cov_0.704044:1-1209 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 24, Coverage: 3, minDepth: 5 [pilon] Confirmed 163 of 1209 bases (13.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1626_length_1209_cov_0.704044:1-1209 [pilon] Processing NODE_7202_length_460_cov_0.749263:1-460 [pilon] NODE_7172_length_461_cov_12.879412:1-461 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 109, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 461 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7172_length_461_cov_12.879412:1-461 [pilon] Processing NODE_2382_length_994_cov_13.552119:1-994 [pilon] NODE_10292_length_314_cov_6.715026:1-314 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 24, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 314 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10292_length_314_cov_6.715026:1-314 [pilon] Processing NODE_6240_length_522_cov_2.496259:1-522 [pilon] NODE_1378_length_1307_cov_1.967116:1-1307 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 67, Coverage: 6, minDepth: 5 [pilon] Confirmed 641 of 1307 bases (49.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1378_length_1307_cov_1.967116:1-1307 [pilon] Processing NODE_8871_length_373_cov_31.500000:1-373 [pilon] NODE_13326_length_243_cov_20.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13326_length_243_cov_20.040984:1-243 [pilon] Processing NODE_14602_length_243_cov_9.377049:1-243 [pilon] NODE_13648_length_243_cov_17.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13648_length_243_cov_17.065574:1-243 [pilon] Processing NODE_9201_length_357_cov_22.940678:1-357 [pilon] NODE_6591_length_498_cov_1.198939:1-498 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 104 of 498 bases (20.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6591_length_498_cov_1.198939:1-498 [pilon] Processing NODE_2973_length_879_cov_4.820580:1-879 [pilon] NODE_6002_length_540_cov_28.637232:1-540 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 283, Coverage: 31, minDepth: 8 [pilon] Confirmed 397 of 540 bases (73.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6002_length_540_cov_28.637232:1-540 [pilon] Processing NODE_2950_length_882_cov_1.005256:1-882 [pilon] NODE_6233_length_522_cov_14.319202:1-522 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 138, Coverage: 14, minDepth: 5 [pilon] Confirmed 285 of 522 bases (54.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6233_length_522_cov_14.319202:1-522 [pilon] Processing NODE_4893_length_627_cov_7.156126:1-627 [pilon] NODE_11809_length_252_cov_23.801527:1-252 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 71, Coverage: 5, minDepth: 5 [pilon] Confirmed 133 of 252 bases (52.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11809_length_252_cov_23.801527:1-252 [pilon] Processing NODE_4916_length_625_cov_1.418651:1-625 [pilon] NODE_13319_length_243_cov_20.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13319_length_243_cov_20.090164:1-243 [pilon] Processing NODE_7564_length_440_cov_15.231975:1-440 [pilon] NODE_12978_length_243_cov_23.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12978_length_243_cov_23.196721:1-243 [pilon] Processing NODE_9138_length_360_cov_14.958159:1-360 [pilon] NODE_8396_length_399_cov_37.665468:1-399 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 203, Coverage: 19, minDepth: 5 [pilon] Confirmed 236 of 399 bases (59.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8396_length_399_cov_37.665468:1-399 [pilon] Processing NODE_4543_length_657_cov_40.220149:1-657 [pilon] NODE_11594_length_261_cov_6.557143:1-261 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11594_length_261_cov_6.557143:1-261 [pilon] Processing NODE_2176_length_1040_cov_3.138194:1-1040 [pilon] NODE_13556_length_243_cov_17.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13556_length_243_cov_17.852459:1-243 [pilon] Processing NODE_106_length_2949_cov_32.185290:1-2949 [pilon] NODE_13014_length_243_cov_22.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13014_length_243_cov_22.762295:1-243 [pilon] Processing NODE_11464_length_264_cov_24.825175:1-264 [pilon] NODE_13012_length_243_cov_22.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13012_length_243_cov_22.778689:1-243 [pilon] Processing NODE_13438_length_243_cov_18.950820:1-243 [pilon] NODE_6405_length_510_cov_12.969152:1-510 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 117, Coverage: 18, minDepth: 5 [pilon] Confirmed 376 of 510 bases (73.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6405_length_510_cov_12.969152:1-510 [pilon] Processing NODE_5229_length_598_cov_48.863732:1-598 [pilon] NODE_7365_length_450_cov_14.133739:1-450 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 109, Coverage: 17, minDepth: 5 [pilon] Confirmed 336 of 450 bases (74.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7365_length_450_cov_14.133739:1-450 [pilon] Processing NODE_4584_length_655_cov_2.116105:1-655 [pilon] NODE_5174_length_603_cov_33.634855:1-603 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 453, Coverage: 34, minDepth: 9 [pilon] Confirmed 371 of 603 bases (61.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5174_length_603_cov_33.634855:1-603 [pilon] Processing NODE_3282_length_818_cov_2.220947:1-818 [pilon] NODE_7046_length_468_cov_20.429395:1-468 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 199, Coverage: 11, minDepth: 5 [pilon] Confirmed 217 of 468 bases (46.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7046_length_468_cov_20.429395:1-468 [pilon] Processing NODE_14703_length_243_cov_8.540984:1-243 [pilon] NODE_5671_length_565_cov_20.822072:1-565 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 243, Coverage: 33, minDepth: 8 [pilon] Confirmed 439 of 565 bases (77.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5671_length_565_cov_20.822072:1-565 [pilon] Processing NODE_6656_length_493_cov_13.642473:1-493 [pilon] NODE_11975_length_246_cov_29.984000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 82, Coverage: 3, minDepth: 5 [pilon] Confirmed 106 of 246 bases (43.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11975_length_246_cov_29.984000:1-246 [pilon] Processing NODE_7603_length_437_cov_34.598101:1-437 [pilon] NODE_5225_length_599_cov_5.338912:1-599 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 63, Coverage: 12, minDepth: 5 [pilon] Confirmed 466 of 599 bases (77.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5225_length_599_cov_5.338912:1-599 [pilon] Processing NODE_11743_length_255_cov_19.567164:1-255 [pilon] NODE_14835_length_243_cov_7.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14835_length_243_cov_7.377049:1-243 [pilon] NODE_1342_length_1324_cov_11.333333:1-1324 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 360, Coverage: 27, minDepth: 7 [pilon] Confirmed 860 of 1324 bases (64.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1342_length_1324_cov_11.333333:1-1324 [pilon] Processing NODE_1930_length_1103_cov_42.495927:1-1103 [pilon] NODE_7202_length_460_cov_0.749263:1-460 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 100 of 460 bases (21.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7202_length_460_cov_0.749263:1-460 [pilon] Processing NODE_10867_length_289_cov_16.625000:1-289 [pilon] Processing NODE_3899_length_728_cov_13.817133:1-728 [pilon] NODE_6240_length_522_cov_2.496259:1-522 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 28, Coverage: 7, minDepth: 5 [pilon] Confirmed 332 of 522 bases (63.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6240_length_522_cov_2.496259:1-522 [pilon] Processing NODE_9989_length_326_cov_20.600000:1-326 [pilon] NODE_2382_length_994_cov_13.552119:1-994 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 309, Coverage: 18, minDepth: 5 [pilon] Confirmed 815 of 994 bases (81.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2382_length_994_cov_13.552119:1-994 [pilon] Processing NODE_4198_length_694_cov_7.574171:1-694 [pilon] NODE_28_length_4683_cov_15.093161:1-4683 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 1586, Coverage: 44, minDepth: 11 [pilon] Confirmed 4179 of 4683 bases (89.24%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_28_length_4683_cov_15.093161:1-4683 [pilon] Processing NODE_11920_length_249_cov_12.421875:1-249 [pilon] NODE_14804_length_243_cov_7.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14804_length_243_cov_7.680328:1-243 [pilon] Processing NODE_5313_length_591_cov_36.617021:1-591 [pilon] NODE_14602_length_243_cov_9.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14602_length_243_cov_9.377049:1-243 [pilon] Processing NODE_1753_length_1159_cov_13.820809:1-1159 [pilon] NODE_2973_length_879_cov_4.820580:1-879 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 88, Coverage: 13, minDepth: 5 [pilon] Confirmed 707 of 879 bases (80.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2973_length_879_cov_4.820580:1-879 [pilon] Processing NODE_10159_length_318_cov_33.111675:1-318 [pilon] NODE_4893_length_627_cov_7.156126:1-627 log: [pilon] NODE_8871_length_373_cov_31.500000:1-373 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 166, Coverage: 20, minDepth: 5 [pilon] Confirmed 256 of 373 bases (68.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 93, Coverage: 12, minDepth: 5 [pilon] Confirmed 436 of 627 bases (69.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8871_length_373_cov_31.500000:1-373 [pilon] Finished processing NODE_4893_length_627_cov_7.156126:1-627 [pilon] Processing NODE_14166_length_243_cov_12.942623:1-243 [pilon] Processing NODE_2099_length_1060_cov_1.189563:1-1060 [pilon] NODE_9201_length_357_cov_22.940678:1-357 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 106, Coverage: 13, minDepth: 5 [pilon] Confirmed 249 of 357 bases (69.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9201_length_357_cov_22.940678:1-357 [pilon] Processing NODE_11268_length_273_cov_14.894737:1-273 [pilon] NODE_2950_length_882_cov_1.005256:1-882 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 28, Coverage: 4, minDepth: 5 [pilon] Confirmed 382 of 882 bases (43.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2950_length_882_cov_1.005256:1-882 [pilon] Processing NODE_14974_length_243_cov_5.770492:1-243 [pilon] NODE_2176_length_1040_cov_3.138194:1-1040 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 72, Coverage: 6, minDepth: 5 [pilon] Confirmed 498 of 1040 bases (47.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2176_length_1040_cov_3.138194:1-1040 [pilon] Processing NODE_3283_length_818_cov_0.632712:1-818 [pilon] NODE_9138_length_360_cov_14.958159:1-360 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 241 of 360 bases (66.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9138_length_360_cov_14.958159:1-360 [pilon] Processing NODE_5845_length_552_cov_3.716937:1-552 [pilon] NODE_4543_length_657_cov_40.220149:1-657 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 479, Coverage: 74, minDepth: 19 [pilon] Confirmed 483 of 657 bases (73.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4543_length_657_cov_40.220149:1-657 [pilon] Processing NODE_7213_length_459_cov_21.618343:1-459 [pilon] NODE_7564_length_440_cov_15.231975:1-440 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 90, Coverage: 6, minDepth: 5 [pilon] Confirmed 224 of 440 bases (50.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7564_length_440_cov_15.231975:1-440 [pilon] Processing NODE_9234_length_356_cov_57.680851:1-356 [pilon] NODE_4916_length_625_cov_1.418651:1-625 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 27, Coverage: 6, minDepth: 5 [pilon] Confirmed 310 of 625 bases (49.60%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4916_length_625_cov_1.418651:1-625 [pilon] Processing NODE_271_length_2294_cov_28.031753:1-2294 [pilon] NODE_11464_length_264_cov_24.825175:1-264 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 69, Coverage: 10, minDepth: 5 [pilon] Confirmed 208 of 264 bases (78.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11464_length_264_cov_24.825175:1-264 [pilon] Processing NODE_3908_length_726_cov_20.467769:1-726 [pilon] NODE_13438_length_243_cov_18.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13438_length_243_cov_18.950820:1-243 [pilon] Processing NODE_7103_length_465_cov_12.299419:1-465 [pilon] NODE_3282_length_818_cov_2.220947:1-818 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 598 of 818 bases (73.11%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3282_length_818_cov_2.220947:1-818 [pilon] Processing NODE_5217_length_600_cov_16.438413:1-600 [pilon] NODE_4584_length_655_cov_2.116105:1-655 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 409 of 655 bases (62.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4584_length_655_cov_2.116105:1-655 [pilon] Processing NODE_14173_length_243_cov_12.868852:1-243 [pilon] NODE_14703_length_243_cov_8.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14703_length_243_cov_8.540984:1-243 [pilon] Processing NODE_14870_length_243_cov_6.991803:1-243 [pilon] NODE_5229_length_598_cov_48.863732:1-598 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 562, Coverage: 85, minDepth: 21 [pilon] Confirmed 521 of 598 bases (87.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5229_length_598_cov_48.863732:1-598 [pilon] Processing NODE_418_length_2017_cov_18.152954:1-2017 [pilon] NODE_6656_length_493_cov_13.642473:1-493 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 114, Coverage: 13, minDepth: 5 [pilon] Confirmed 397 of 493 bases (80.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6656_length_493_cov_13.642473:1-493 [pilon] Processing NODE_12741_length_243_cov_25.688525:1-243 [pilon] NODE_3899_length_728_cov_13.817133:1-728 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 211, Coverage: 28, minDepth: 7 [pilon] Confirmed 594 of 728 bases (81.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3899_length_728_cov_13.817133:1-728 [pilon] Processing NODE_12642_length_243_cov_26.950820:1-243 [pilon] NODE_7603_length_437_cov_34.598101:1-437 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 260, Coverage: 44, minDepth: 11 [pilon] Confirmed 354 of 437 bases (81.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7603_length_437_cov_34.598101:1-437 [pilon] Processing NODE_5028_length_617_cov_2.074597:1-617 [pilon] NODE_1753_length_1159_cov_13.820809:1-1159 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 332, Coverage: 22, minDepth: 6 [pilon] Confirmed 1011 of 1159 bases (87.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1753_length_1159_cov_13.820809:1-1159 [pilon] Processing NODE_7773_length_429_cov_7.850649:1-429 [pilon] NODE_106_length_2949_cov_32.185290:1-2949 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 2207, Coverage: 76, minDepth: 19 [pilon] Confirmed 2167 of 2949 bases (73.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_106_length_2949_cov_32.185290:1-2949 [pilon] Processing NODE_4308_length_680_cov_14.091234:1-680 [pilon] NODE_10867_length_289_cov_16.625000:1-289 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 45, Coverage: 2, minDepth: 5 [pilon] Confirmed 51 of 289 bases (17.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10867_length_289_cov_16.625000:1-289 [pilon] Processing NODE_11651_length_258_cov_14.613139:1-258 [pilon] NODE_4198_length_694_cov_7.574171:1-694 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 95, Coverage: 13, minDepth: 5 [pilon] Confirmed 582 of 694 bases (83.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4198_length_694_cov_7.574171:1-694 [pilon] Processing NODE_4006_length_715_cov_7.132997:1-715 [pilon] NODE_11920_length_249_cov_12.421875:1-249 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 30, Coverage: 3, minDepth: 5 [pilon] Confirmed 25 of 249 bases (10.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11920_length_249_cov_12.421875:1-249 [pilon] Processing NODE_9884_length_330_cov_25.784689:1-330 [pilon] NODE_11743_length_255_cov_19.567164:1-255 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 56, Coverage: 7, minDepth: 5 [pilon] Confirmed 189 of 255 bases (74.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11743_length_255_cov_19.567164:1-255 [pilon] Processing NODE_10360_length_310_cov_37.523810:1-310 [pilon] NODE_1930_length_1103_cov_42.495927:1-1103 log: [pilon] frags shovill.bam: coverage 104 [pilon] Total Reads: 968, Coverage: 104, minDepth: 26 [pilon] Confirmed 791 of 1103 bases (71.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1930_length_1103_cov_42.495927:1-1103 [pilon] Processing NODE_371_length_2095_cov_4.531915:1-2095 [pilon] NODE_2099_length_1060_cov_1.189563:1-1060 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 29, Coverage: 4, minDepth: 5 [pilon] Confirmed 313 of 1060 bases (29.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2099_length_1060_cov_1.189563:1-1060 [pilon] Processing NODE_12728_length_243_cov_25.877049:1-243 [pilon] NODE_9989_length_326_cov_20.600000:1-326 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 101, Coverage: 10, minDepth: 5 [pilon] Confirmed 200 of 326 bases (61.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9989_length_326_cov_20.600000:1-326 [pilon] Processing NODE_949_length_1528_cov_17.950249:1-1528 [pilon] NODE_5313_length_591_cov_36.617021:1-591 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 391, Coverage: 26, minDepth: 7 [pilon] Confirmed 433 of 591 bases (73.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5313_length_591_cov_36.617021:1-591 [pilon] Processing NODE_591_length_1820_cov_5.423779:1-1820 [pilon] NODE_14166_length_243_cov_12.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14166_length_243_cov_12.942623:1-243 [pilon] Processing NODE_8891_length_372_cov_19.796813:1-372 [pilon] NODE_10159_length_318_cov_33.111675:1-318 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 140, Coverage: 5, minDepth: 5 [pilon] Confirmed 144 of 318 bases (45.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10159_length_318_cov_33.111675:1-318 [pilon] Processing NODE_673_length_1725_cov_27.379676:1-1725 [pilon] NODE_11268_length_273_cov_14.894737:1-273 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 46, Coverage: 7, minDepth: 5 [pilon] Confirmed 186 of 273 bases (68.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11268_length_273_cov_14.894737:1-273 [pilon] Processing NODE_11730_length_255_cov_22.395522:1-255 [pilon] NODE_3283_length_818_cov_0.632712:1-818 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 20, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 818 bases (15.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3283_length_818_cov_0.632712:1-818 [pilon] Processing NODE_10388_length_309_cov_18.031915:1-309 [pilon] NODE_14974_length_243_cov_5.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14974_length_243_cov_5.770492:1-243 [pilon] Processing NODE_12567_length_243_cov_28.065574:1-243 [pilon] NODE_5845_length_552_cov_3.716937:1-552 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 40, Coverage: 8, minDepth: 5 [pilon] Confirmed 384 of 552 bases (69.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5845_length_552_cov_3.716937:1-552 [pilon] Processing NODE_5605_length_570_cov_18.739421:1-570 [pilon] NODE_7213_length_459_cov_21.618343:1-459 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 176, Coverage: 22, minDepth: 6 [pilon] Confirmed 309 of 459 bases (67.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7213_length_459_cov_21.618343:1-459 [pilon] Processing NODE_4217_length_692_cov_3.050788:1-692 [pilon] NODE_14173_length_243_cov_12.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14173_length_243_cov_12.868852:1-243 [pilon] Processing NODE_6089_length_533_cov_1.478155:1-533 [pilon] NODE_9234_length_356_cov_57.680851:1-356 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 298, Coverage: 51, minDepth: 13 [pilon] Confirmed 319 of 356 bases (89.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9234_length_356_cov_57.680851:1-356 [pilon] Processing NODE_7142_length_463_cov_0.988304:1-463 [pilon] NODE_3908_length_726_cov_20.467769:1-726 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 303, Coverage: 37, minDepth: 9 [pilon] Confirmed 609 of 726 bases (83.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3908_length_726_cov_20.467769:1-726 [pilon] Processing NODE_13809_length_243_cov_15.573770:1-243 [pilon] NODE_5217_length_600_cov_16.438413:1-600 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 191, Coverage: 15, minDepth: 5 [pilon] Confirmed 351 of 600 bases (58.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5217_length_600_cov_16.438413:1-600 [pilon] Processing NODE_13173_length_243_cov_21.352459:1-243 [pilon] NODE_7773_length_429_cov_7.850649:1-429 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 52, Coverage: 10, minDepth: 5 [pilon] Confirmed 272 of 429 bases (63.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7773_length_429_cov_7.850649:1-429 [pilon] Processing NODE_13333_length_243_cov_19.967213:1-243 [pilon] NODE_7103_length_465_cov_12.299419:1-465 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 86, Coverage: 7, minDepth: 5 [pilon] Confirmed 236 of 465 bases (50.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7103_length_465_cov_12.299419:1-465 [pilon] Processing NODE_12020_length_246_cov_12.736000:1-246 [pilon] NODE_12642_length_243_cov_26.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12642_length_243_cov_26.950820:1-243 [pilon] Processing NODE_6844_length_481_cov_1.380556:1-481 [pilon] NODE_271_length_2294_cov_28.031753:1-2294 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 1410, Coverage: 56, minDepth: 14 [pilon] Confirmed 2040 of 2294 bases (88.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_271_length_2294_cov_28.031753:1-2294 [pilon] Processing NODE_603_length_1807_cov_2.157177:1-1807 [pilon] NODE_14870_length_243_cov_6.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14870_length_243_cov_6.991803:1-243 [pilon] Processing NODE_5359_length_587_cov_40.506438:1-587 [pilon] NODE_12741_length_243_cov_25.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12741_length_243_cov_25.688525:1-243 [pilon] Processing NODE_2106_length_1057_cov_16.404915:1-1057 [pilon] NODE_5028_length_617_cov_2.074597:1-617 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 36, Coverage: 8, minDepth: 5 [pilon] Confirmed 467 of 617 bases (75.69%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5028_length_617_cov_2.074597:1-617 [pilon] Processing NODE_10243_length_315_cov_15.798969:1-315 [pilon] NODE_4006_length_715_cov_7.132997:1-715 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 110, Coverage: 12, minDepth: 5 [pilon] Confirmed 679 of 715 bases (94.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4006_length_715_cov_7.132997:1-715 [pilon] Processing NODE_7044_length_468_cov_21.178674:1-468 [pilon] NODE_418_length_2017_cov_18.152954:1-2017 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 788, Coverage: 44, minDepth: 11 [pilon] Confirmed 1449 of 2017 bases (71.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_418_length_2017_cov_18.152954:1-2017 [pilon] Processing NODE_11187_length_276_cov_18.316129:1-276 [pilon] NODE_10360_length_310_cov_37.523810:1-310 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 148, Coverage: 22, minDepth: 6 [pilon] Confirmed 252 of 310 bases (81.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10360_length_310_cov_37.523810:1-310 [pilon] Processing NODE_1564_length_1232_cov_20.761476:1-1232 [pilon] NODE_9884_length_330_cov_25.784689:1-330 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 105, Coverage: 5, minDepth: 5 [pilon] Confirmed 154 of 330 bases (46.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9884_length_330_cov_25.784689:1-330 [pilon] Processing NODE_13771_length_243_cov_15.877049:1-243 [pilon] NODE_11651_length_258_cov_14.613139:1-258 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 40, Coverage: 6, minDepth: 5 [pilon] Confirmed 173 of 258 bases (67.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11651_length_258_cov_14.613139:1-258 [pilon] Processing NODE_14643_length_243_cov_9.073770:1-243 [pilon] NODE_4308_length_680_cov_14.091234:1-680 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 171, Coverage: 16, minDepth: 5 [pilon] Confirmed 552 of 680 bases (81.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4308_length_680_cov_14.091234:1-680 [pilon] Processing NODE_6993_length_472_cov_0.484330:1-472 [pilon] NODE_8891_length_372_cov_19.796813:1-372 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 101, Coverage: 10, minDepth: 5 [pilon] Confirmed 233 of 372 bases (62.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8891_length_372_cov_19.796813:1-372 [pilon] Processing NODE_714_length_1694_cov_10.537190:1-1694 [pilon] NODE_371_length_2095_cov_4.531915:1-2095 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 220, Coverage: 14, minDepth: 5 [pilon] Confirmed 1813 of 2095 bases (86.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_371_length_2095_cov_4.531915:1-2095 [pilon] Processing NODE_7726_length_431_cov_24.138710:1-431 [pilon] NODE_12728_length_243_cov_25.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12728_length_243_cov_25.877049:1-243 [pilon] Processing NODE_9967_length_327_cov_18.058252:1-327 [pilon] NODE_591_length_1820_cov_5.423779:1-1820 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 233, Coverage: 16, minDepth: 5 [pilon] Confirmed 1712 of 1820 bases (94.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_591_length_1820_cov_5.423779:1-1820 [pilon] Processing NODE_9453_length_348_cov_12.145374:1-348 [pilon] NODE_949_length_1528_cov_17.950249:1-1528 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 683, Coverage: 46, minDepth: 12 [pilon] Confirmed 1324 of 1528 bases (86.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_949_length_1528_cov_17.950249:1-1528 [pilon] Processing NODE_1224_length_1378_cov_31.036595:1-1378 [pilon] NODE_11730_length_255_cov_22.395522:1-255 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 71, Coverage: 7, minDepth: 5 [pilon] Confirmed 181 of 255 bases (70.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11730_length_255_cov_22.395522:1-255 [pilon] Processing NODE_10585_length_302_cov_14.425414:1-302 [pilon] NODE_10388_length_309_cov_18.031915:1-309 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 93, Coverage: 3, minDepth: 5 [pilon] Confirmed 91 of 309 bases (29.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10388_length_309_cov_18.031915:1-309 [pilon] Processing NODE_5961_length_544_cov_1.879433:1-544 [pilon] NODE_12567_length_243_cov_28.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12567_length_243_cov_28.065574:1-243 [pilon] Processing NODE_2378_length_995_cov_2.395881:1-995 [pilon] NODE_13809_length_243_cov_15.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13809_length_243_cov_15.573770:1-243 [pilon] Processing NODE_6419_length_509_cov_47.440722:1-509 [pilon] NODE_673_length_1725_cov_27.379676:1-1725 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 1134, Coverage: 47, minDepth: 12 [pilon] Confirmed 1516 of 1725 bases (87.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_673_length_1725_cov_27.379676:1-1725 [pilon] Processing NODE_7659_length_435_cov_6.914013:1-435 [pilon] NODE_6089_length_533_cov_1.478155:1-533 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 134 of 533 bases (25.14%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6089_length_533_cov_1.478155:1-533 [pilon] Processing NODE_11112_length_279_cov_18.474684:1-279 [pilon] NODE_13333_length_243_cov_19.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13333_length_243_cov_19.967213:1-243 [pilon] Processing NODE_7879_length_423_cov_33.596026:1-423 [pilon] NODE_4217_length_692_cov_3.050788:1-692 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 51, Coverage: 9, minDepth: 5 [pilon] Confirmed 474 of 692 bases (68.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4217_length_692_cov_3.050788:1-692 [pilon] Processing NODE_11838_length_252_cov_11.206107:1-252 [pilon] NODE_5605_length_570_cov_18.739421:1-570 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 220, Coverage: 16, minDepth: 5 [pilon] Confirmed 418 of 570 bases (73.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5605_length_570_cov_18.739421:1-570 [pilon] Processing NODE_138_length_2788_cov_2.385077:1-2788 [pilon] NODE_7142_length_463_cov_0.988304:1-463 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 149 of 463 bases (32.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7142_length_463_cov_0.988304:1-463 [pilon] Processing NODE_2777_length_913_cov_16.645202:1-913 [pilon] NODE_13173_length_243_cov_21.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12020_length_246_cov_12.736000:1-246 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 35, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13173_length_243_cov_21.352459:1-243 [pilon] Finished processing NODE_12020_length_246_cov_12.736000:1-246 [pilon] Processing NODE_10515_length_304_cov_10.961749:1-304 [pilon] Processing NODE_6428_length_508_cov_6.834625:1-508 [pilon] NODE_7044_length_468_cov_21.178674:1-468 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 184, Coverage: 28, minDepth: 7 [pilon] Confirmed 420 of 468 bases (89.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7044_length_468_cov_21.178674:1-468 [pilon] Processing NODE_12974_length_243_cov_23.221311:1-243 [pilon] NODE_1564_length_1232_cov_20.761476:1-1232 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 556, Coverage: 41, minDepth: 10 [pilon] Confirmed 1106 of 1232 bases (89.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1564_length_1232_cov_20.761476:1-1232 [pilon] Processing NODE_1459_length_1278_cov_14.737252:1-1278 [pilon] NODE_6844_length_481_cov_1.380556:1-481 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 169 of 481 bases (35.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6844_length_481_cov_1.380556:1-481 [pilon] Processing NODE_2110_length_1056_cov_22.087701:1-1056 [pilon] NODE_5359_length_587_cov_40.506438:1-587 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 434, Coverage: 62, minDepth: 16 [pilon] Confirmed 543 of 587 bases (92.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5359_length_587_cov_40.506438:1-587 [pilon] Processing NODE_13483_length_243_cov_18.532787:1-243 [pilon] NODE_2106_length_1057_cov_16.404915:1-1057 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 343, Coverage: 32, minDepth: 8 [pilon] Confirmed 952 of 1057 bases (90.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2106_length_1057_cov_16.404915:1-1057 [pilon] Processing NODE_9099_length_361_cov_27.387500:1-361 [pilon] NODE_603_length_1807_cov_2.157177:1-1807 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 103, Coverage: 7, minDepth: 5 [pilon] Confirmed 1013 of 1807 bases (56.06%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_603_length_1807_cov_2.157177:1-1807 [pilon] Processing NODE_2320_length_1006_cov_22.229379:1-1006 [pilon] NODE_10243_length_315_cov_15.798969:1-315 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 73, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 315 bases (47.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10243_length_315_cov_15.798969:1-315 [pilon] Processing NODE_10615_length_300_cov_24.340782:1-300 [pilon] NODE_11187_length_276_cov_18.316129:1-276 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 65, Coverage: 4, minDepth: 5 [pilon] Confirmed 115 of 276 bases (41.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11187_length_276_cov_18.316129:1-276 [pilon] Processing NODE_14411_length_243_cov_11.000000:1-243 [pilon] NODE_14643_length_243_cov_9.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14643_length_243_cov_9.073770:1-243 [pilon] Processing NODE_6054_length_535_cov_30.765700:1-535 [pilon] NODE_13771_length_243_cov_15.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13771_length_243_cov_15.877049:1-243 [pilon] NODE_6993_length_472_cov_0.484330:1-472 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 7, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 472 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6993_length_472_cov_0.484330:1-472 [pilon] Processing NODE_1614_length_1212_cov_9.529789:1-1212 [pilon] NODE_714_length_1694_cov_10.537190:1-1694 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 408, Coverage: 20, minDepth: 5 [pilon] Confirmed 1505 of 1694 bases (88.84%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_714_length_1694_cov_10.537190:1-1694 [pilon] Processing NODE_2993_length_874_cov_9.912351:1-874 [pilon] Processing NODE_4297_length_681_cov_43.503571:1-681 [pilon] NODE_9967_length_327_cov_18.058252:1-327 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 80, Coverage: 4, minDepth: 5 [pilon] Confirmed 143 of 327 bases (43.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9967_length_327_cov_18.058252:1-327 [pilon] Processing NODE_6284_length_519_cov_0.919598:1-519 [pilon] NODE_7726_length_431_cov_24.138710:1-431 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 159, Coverage: 17, minDepth: 5 [pilon] Confirmed 397 of 431 bases (92.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7726_length_431_cov_24.138710:1-431 [pilon] Processing NODE_9174_length_358_cov_24.700422:1-358 [pilon] NODE_6419_length_509_cov_47.440722:1-509 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 509, Coverage: 91, minDepth: 23 [pilon] Confirmed 422 of 509 bases (82.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6419_length_509_cov_47.440722:1-509 [pilon] Processing NODE_12255_length_243_cov_34.360656:1-243 [pilon] NODE_9453_length_348_cov_12.145374:1-348 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 62, Coverage: 2, minDepth: 5 [pilon] Confirmed 117 of 348 bases (33.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9453_length_348_cov_12.145374:1-348 [pilon] Processing NODE_1408_length_1295_cov_20.605622:1-1295 [pilon] NODE_12974_length_243_cov_23.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12974_length_243_cov_23.221311:1-243 [pilon] Processing NODE_7412_length_447_cov_25.395706:1-447 [pilon] NODE_1224_length_1378_cov_31.036595:1-1378 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 963, Coverage: 46, minDepth: 12 [pilon] Confirmed 1166 of 1378 bases (84.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1224_length_1378_cov_31.036595:1-1378 [pilon] Processing NODE_6851_length_480_cov_23.827298:1-480 [pilon] NODE_10585_length_302_cov_14.425414:1-302 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 42, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 302 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10585_length_302_cov_14.425414:1-302 [pilon] Processing NODE_2929_length_887_cov_1.919060:1-887 [pilon] NODE_2378_length_995_cov_2.395881:1-995 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 62, Coverage: 8, minDepth: 5 [pilon] Confirmed 759 of 995 bases (76.28%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2378_length_995_cov_2.395881:1-995 [pilon] Processing NODE_11320_length_270_cov_28.248322:1-270 [pilon] NODE_7659_length_435_cov_6.914013:1-435 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 47, Coverage: 6, minDepth: 5 [pilon] Confirmed 249 of 435 bases (57.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7659_length_435_cov_6.914013:1-435 [pilon] Processing NODE_12170_length_243_cov_38.139344:1-243 [pilon] NODE_5961_length_544_cov_1.879433:1-544 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 28, Coverage: 7, minDepth: 5 [pilon] Confirmed 312 of 544 bases (57.35%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5961_length_544_cov_1.879433:1-544 [pilon] Processing NODE_398_length_2051_cov_6.570466:1-2051 [pilon] NODE_1459_length_1278_cov_14.737252:1-1278 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 379, Coverage: 34, minDepth: 9 [pilon] Confirmed 1042 of 1278 bases (81.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1459_length_1278_cov_14.737252:1-1278 [pilon] Processing NODE_4561_length_657_cov_0.451493:1-657 [pilon] NODE_11112_length_279_cov_18.474684:1-279 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 72, Coverage: 8, minDepth: 5 [pilon] Confirmed 193 of 279 bases (69.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11112_length_279_cov_18.474684:1-279 [pilon] Processing NODE_1052_length_1466_cov_29.589591:1-1466 [pilon] NODE_11838_length_252_cov_11.206107:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11838_length_252_cov_11.206107:1-252 [pilon] Processing NODE_12701_length_243_cov_26.204918:1-243 [pilon] NODE_7879_length_423_cov_33.596026:1-423 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 239, Coverage: 44, minDepth: 11 [pilon] Confirmed 352 of 423 bases (83.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7879_length_423_cov_33.596026:1-423 [pilon] Processing NODE_1154_length_1415_cov_22.326893:1-1415 [pilon] NODE_2777_length_913_cov_16.645202:1-913 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 341, Coverage: 36, minDepth: 9 [pilon] Confirmed 706 of 913 bases (77.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2777_length_913_cov_16.645202:1-913 [pilon] Processing NODE_12172_length_243_cov_37.934426:1-243 [pilon] NODE_138_length_2788_cov_2.385077:1-2788 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 177, Coverage: 8, minDepth: 5 [pilon] Confirmed 2124 of 2788 bases (76.18%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_138_length_2788_cov_2.385077:1-2788 [pilon] Processing NODE_9863_length_331_cov_19.633333:1-331 [pilon] NODE_10515_length_304_cov_10.961749:1-304 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 45, Coverage: 2, minDepth: 5 [pilon] Confirmed 44 of 304 bases (14.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10515_length_304_cov_10.961749:1-304 [pilon] Processing NODE_10838_length_291_cov_10.841176:1-291 [pilon] NODE_6428_length_508_cov_6.834625:1-508 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 65, Coverage: 6, minDepth: 5 [pilon] Confirmed 283 of 508 bases (55.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6428_length_508_cov_6.834625:1-508 [pilon] Processing NODE_6707_length_489_cov_63.472826:1-489 [pilon] NODE_2110_length_1056_cov_22.087701:1-1056 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 478, Coverage: 38, minDepth: 10 [pilon] Confirmed 769 of 1056 bases (72.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2110_length_1056_cov_22.087701:1-1056 [pilon] Processing NODE_10162_length_318_cov_23.878173:1-318 [pilon] NODE_13483_length_243_cov_18.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13483_length_243_cov_18.532787:1-243 [pilon] Processing NODE_15077_length_235_cov_8.842105:1-235 [pilon] NODE_10615_length_300_cov_24.340782:1-300 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 99, Coverage: 7, minDepth: 5 [pilon] Confirmed 181 of 300 bases (60.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10615_length_300_cov_24.340782:1-300 [pilon] Processing NODE_1531_length_1248_cov_52.409051:1-1248 [pilon] NODE_9099_length_361_cov_27.387500:1-361 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 140, Coverage: 13, minDepth: 5 [pilon] Confirmed 237 of 361 bases (65.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9099_length_361_cov_27.387500:1-361 [pilon] Processing NODE_2834_length_904_cov_32.459770:1-904 [pilon] NODE_2993_length_874_cov_9.912351:1-874 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 201, Coverage: 18, minDepth: 5 [pilon] Confirmed 683 of 874 bases (78.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2993_length_874_cov_9.912351:1-874 [pilon] Processing NODE_2748_length_918_cov_1.998745:1-918 [pilon] NODE_14411_length_243_cov_11.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14411_length_243_cov_11.000000:1-243 [pilon] Processing NODE_5887_length_549_cov_2.941589:1-549 [pilon] NODE_2320_length_1006_cov_22.229379:1-1006 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 462, Coverage: 50, minDepth: 13 [pilon] Confirmed 823 of 1006 bases (81.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2320_length_1006_cov_22.229379:1-1006 [pilon] Processing NODE_4842_length_631_cov_20.645098:1-631 [pilon] NODE_6054_length_535_cov_30.765700:1-535 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 291, Coverage: 42, minDepth: 11 [pilon] Confirmed 438 of 535 bases (81.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6054_length_535_cov_30.765700:1-535 [pilon] Processing NODE_7254_length_457_cov_1.360119:1-457 [pilon] NODE_1614_length_1212_cov_9.529789:1-1212 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 253, Coverage: 21, minDepth: 5 [pilon] Confirmed 993 of 1212 bases (81.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1614_length_1212_cov_9.529789:1-1212 [pilon] Processing NODE_530_length_1881_cov_27.670455:1-1881 [pilon] NODE_4297_length_681_cov_43.503571:1-681 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 544, Coverage: 86, minDepth: 22 [pilon] Confirmed 582 of 681 bases (85.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4297_length_681_cov_43.503571:1-681 [pilon] Processing NODE_2207_length_1032_cov_1.781559:1-1032 [pilon] NODE_7412_length_447_cov_25.395706:1-447 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 194, Coverage: 33, minDepth: 8 [pilon] Confirmed 377 of 447 bases (84.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7412_length_447_cov_25.395706:1-447 [pilon] Processing NODE_4022_length_713_cov_19.282095:1-713 [pilon] NODE_4561_length_657_cov_0.451493:1-657 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 13, Coverage: 2, minDepth: 5 [pilon] Confirmed 72 of 657 bases (10.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4561_length_657_cov_0.451493:1-657 [pilon] Processing NODE_2446_length_979_cov_20.820513:1-979 [pilon] NODE_6284_length_519_cov_0.919598:1-519 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 519 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6284_length_519_cov_0.919598:1-519 [pilon] Processing NODE_4907_length_626_cov_0.904950:1-626 [pilon] NODE_12255_length_243_cov_34.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 96, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12255_length_243_cov_34.360656:1-243 [pilon] Processing NODE_14838_length_243_cov_7.360656:1-243 [pilon] NODE_9174_length_358_cov_24.700422:1-358 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 131, Coverage: 24, minDepth: 6 [pilon] Confirmed 308 of 358 bases (86.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9174_length_358_cov_24.700422:1-358 [pilon] Processing NODE_4776_length_637_cov_7.153101:1-637 [pilon] NODE_12170_length_243_cov_38.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12170_length_243_cov_38.139344:1-243 [pilon] NODE_11320_length_270_cov_28.248322:1-270 log: [pilon] Processing NODE_2534_length_960_cov_20.637664:1-960 [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 91, Coverage: 12, minDepth: 5 [pilon] Confirmed 236 of 270 bases (87.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11320_length_270_cov_28.248322:1-270 [pilon] Processing NODE_6847_length_481_cov_0.850000:1-481 [pilon] NODE_6851_length_480_cov_23.827298:1-480 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 212, Coverage: 9, minDepth: 5 [pilon] Confirmed 254 of 480 bases (52.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_2929_length_887_cov_1.919060:1-887 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 48, Coverage: 6, minDepth: 5 [pilon] Confirmed 341 of 887 bases (38.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6851_length_480_cov_23.827298:1-480 [pilon] Processing NODE_14459_length_243_cov_10.622951:1-243 [pilon] Finished processing NODE_2929_length_887_cov_1.919060:1-887 [pilon] Processing NODE_15238_length_134_cov_46.230769:1-134 [pilon] NODE_1408_length_1295_cov_20.605622:1-1295 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 621, Coverage: 50, minDepth: 13 [pilon] Confirmed 710 of 1295 bases (54.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1408_length_1295_cov_20.605622:1-1295 [pilon] Processing NODE_4275_length_684_cov_14.513321:1-684 [pilon] NODE_12701_length_243_cov_26.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12701_length_243_cov_26.204918:1-243 [pilon] Processing NODE_8240_length_407_cov_1.846154:1-407 [pilon] NODE_398_length_2051_cov_6.570466:1-2051 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 360, Coverage: 17, minDepth: 5 [pilon] Confirmed 1610 of 2051 bases (78.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_398_length_2051_cov_6.570466:1-2051 [pilon] Processing NODE_5893_length_548_cov_21.416862:1-548 [pilon] NODE_1154_length_1415_cov_22.326893:1-1415 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 747, Coverage: 52, minDepth: 13 [pilon] Confirmed 1240 of 1415 bases (87.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1154_length_1415_cov_22.326893:1-1415 [pilon] Processing NODE_1946_length_1099_cov_1.422290:1-1099 [pilon] NODE_1052_length_1466_cov_29.589591:1-1466 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 903, Coverage: 54, minDepth: 14 [pilon] Confirmed 1246 of 1466 bases (84.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1052_length_1466_cov_29.589591:1-1466 [pilon] Processing NODE_7117_length_465_cov_1.563953:1-465 [pilon] NODE_12172_length_243_cov_37.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 92, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12172_length_243_cov_37.934426:1-243 [pilon] Processing NODE_7477_length_444_cov_17.876161:1-444 [pilon] NODE_10838_length_291_cov_10.841176:1-291 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 52, Coverage: 4, minDepth: 5 [pilon] Confirmed 146 of 291 bases (50.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10838_length_291_cov_10.841176:1-291 [pilon] Processing NODE_5375_length_586_cov_7.881720:1-586 [pilon] NODE_9863_length_331_cov_19.633333:1-331 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 89, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 331 bases (39.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9863_length_331_cov_19.633333:1-331 [pilon] Processing NODE_9760_length_336_cov_13.520930:1-336 [pilon] NODE_6707_length_489_cov_63.472826:1-489 log: [pilon] frags shovill.bam: coverage 94 [pilon] Total Reads: 519, Coverage: 94, minDepth: 24 [pilon] Confirmed 425 of 489 bases (86.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6707_length_489_cov_63.472826:1-489 [pilon] Processing NODE_10733_length_297_cov_7.352273:1-297 [pilon] NODE_4022_length_713_cov_19.282095:1-713 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 251, Coverage: 30, minDepth: 8 [pilon] Confirmed 404 of 713 bases (56.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4022_length_713_cov_19.282095:1-713 [pilon] Processing NODE_10801_length_293_cov_24.720930:1-293 [pilon] NODE_2748_length_918_cov_1.998745:1-918 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 44, Coverage: 6, minDepth: 5 [pilon] Confirmed 548 of 918 bases (59.69%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2748_length_918_cov_1.998745:1-918 [pilon] Processing NODE_7907_length_423_cov_0.788079:1-423 [pilon] NODE_2446_length_979_cov_20.820513:1-979 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 412, Coverage: 41, minDepth: 10 [pilon] Confirmed 794 of 979 bases (81.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2446_length_979_cov_20.820513:1-979 [pilon] Processing NODE_4024_length_713_cov_16.089527:1-713 [pilon] NODE_15077_length_235_cov_8.842105:1-235 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 20, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 235 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15077_length_235_cov_8.842105:1-235 [pilon] Processing NODE_14638_length_243_cov_9.122951:1-243 [pilon] NODE_10162_length_318_cov_23.878173:1-318 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 92, Coverage: 12, minDepth: 5 [pilon] Confirmed 263 of 318 bases (82.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10162_length_318_cov_23.878173:1-318 [pilon] Processing NODE_750_length_1669_cov_12.555556:1-1669 [pilon] NODE_2834_length_904_cov_32.459770:1-904 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 573, Coverage: 56, minDepth: 14 [pilon] Confirmed 773 of 904 bases (85.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2834_length_904_cov_32.459770:1-904 [pilon] Processing NODE_1350_length_1319_cov_26.443239:1-1319 [pilon] NODE_5887_length_549_cov_2.941589:1-549 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 29, Coverage: 7, minDepth: 5 [pilon] Confirmed 324 of 549 bases (59.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5887_length_549_cov_2.941589:1-549 [pilon] Processing NODE_14218_length_243_cov_12.467213:1-243 [pilon] NODE_1531_length_1248_cov_52.409051:1-1248 log: [pilon] frags shovill.bam: coverage 118 [pilon] Total Reads: 1347, Coverage: 118, minDepth: 30 [pilon] Confirmed 1170 of 1248 bases (93.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1531_length_1248_cov_52.409051:1-1248 [pilon] Processing NODE_12275_length_243_cov_33.868852:1-243 [pilon] NODE_7254_length_457_cov_1.360119:1-457 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 125 of 457 bases (27.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7254_length_457_cov_1.360119:1-457 [pilon] Processing NODE_13573_length_243_cov_17.729508:1-243 [pilon] NODE_4842_length_631_cov_20.645098:1-631 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 287, Coverage: 28, minDepth: 7 [pilon] Confirmed 470 of 631 bases (74.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4842_length_631_cov_20.645098:1-631 [pilon] Processing NODE_8551_length_391_cov_20.314815:1-391 [pilon] NODE_14838_length_243_cov_7.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14838_length_243_cov_7.360656:1-243 [pilon] Processing NODE_5582_length_572_cov_6.543237:1-572 [pilon] NODE_2207_length_1032_cov_1.781559:1-1032 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 42, Coverage: 5, minDepth: 5 [pilon] Confirmed 487 of 1032 bases (47.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2207_length_1032_cov_1.781559:1-1032 [pilon] Processing NODE_11855_length_251_cov_24.853846:1-251 [pilon] NODE_530_length_1881_cov_27.670455:1-1881 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 1281, Coverage: 62, minDepth: 16 [pilon] Confirmed 1315 of 1881 bases (69.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_530_length_1881_cov_27.670455:1-1881 [pilon] Processing NODE_5071_length_613_cov_1.902439:1-613 [pilon] NODE_4907_length_626_cov_0.904950:1-626 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 626 bases (20.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4907_length_626_cov_0.904950:1-626 [pilon] Processing NODE_2194_length_1036_cov_2.111475:1-1036 [pilon] NODE_15238_length_134_cov_46.230769:1-134 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 134 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15238_length_134_cov_46.230769:1-134 [pilon] Processing NODE_6159_length_528_cov_0.921376:1-528 [pilon] NODE_14459_length_243_cov_10.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14459_length_243_cov_10.622951:1-243 [pilon] Processing NODE_4191_length_695_cov_1.500000:1-695 [pilon] NODE_4776_length_637_cov_7.153101:1-637 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 93, Coverage: 8, minDepth: 5 [pilon] Confirmed 305 of 637 bases (47.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4776_length_637_cov_7.153101:1-637 [pilon] Processing NODE_685_length_1716_cov_14.388088:1-1716 [pilon] NODE_6847_length_481_cov_0.850000:1-481 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 13, Coverage: 4, minDepth: 5 [pilon] Confirmed 148 of 481 bases (30.77%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6847_length_481_cov_0.850000:1-481 [pilon] Processing NODE_1804_length_1146_cov_4.628293:1-1146 [pilon] NODE_2534_length_960_cov_20.637664:1-960 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 472, Coverage: 44, minDepth: 11 [pilon] Confirmed 829 of 960 bases (86.35%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2534_length_960_cov_20.637664:1-960 [pilon] Processing NODE_14370_length_243_cov_11.286885:1-243 [pilon] NODE_5893_length_548_cov_21.416862:1-548 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 281, Coverage: 41, minDepth: 10 [pilon] Confirmed 454 of 548 bases (82.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5893_length_548_cov_21.416862:1-548 [pilon] Processing NODE_13143_length_243_cov_21.606557:1-243 [pilon] NODE_4275_length_684_cov_14.513321:1-684 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 189, Coverage: 22, minDepth: 6 [pilon] Confirmed 357 of 684 bases (52.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4275_length_684_cov_14.513321:1-684 [pilon] Processing NODE_2208_length_1032_cov_1.386389:1-1032 [pilon] NODE_8240_length_407_cov_1.846154:1-407 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 168 of 407 bases (41.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8240_length_407_cov_1.846154:1-407 [pilon] Processing NODE_4863_length_629_cov_35.531496:1-629 [pilon] NODE_7477_length_444_cov_17.876161:1-444 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 130, Coverage: 19, minDepth: 5 [pilon] Confirmed 332 of 444 bases (74.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7477_length_444_cov_17.876161:1-444 [pilon] Processing NODE_4988_length_619_cov_21.070281:1-619 [pilon] NODE_1946_length_1099_cov_1.422290:1-1099 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 39, Coverage: 4, minDepth: 5 [pilon] Confirmed 541 of 1099 bases (49.23%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1946_length_1099_cov_1.422290:1-1099 [pilon] Processing NODE_14912_length_243_cov_6.565574:1-243 [pilon] NODE_9760_length_336_cov_13.520930:1-336 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 146 of 336 bases (43.45%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9760_length_336_cov_13.520930:1-336 [pilon] Processing NODE_15029_length_243_cov_5.090164:1-243 [pilon] NODE_10801_length_293_cov_24.720930:1-293 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 87, Coverage: 4, minDepth: 5 [pilon] Confirmed 133 of 293 bases (45.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10801_length_293_cov_24.720930:1-293 [pilon] Processing NODE_4915_length_625_cov_1.440476:1-625 [pilon] NODE_5375_length_586_cov_7.881720:1-586 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 96, Coverage: 16, minDepth: 5 [pilon] Confirmed 531 of 586 bases (90.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5375_length_586_cov_7.881720:1-586 [pilon] Processing NODE_13203_length_243_cov_21.057377:1-243 [pilon] NODE_7117_length_465_cov_1.563953:1-465 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 20, Coverage: 6, minDepth: 5 [pilon] Confirmed 279 of 465 bases (60.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7117_length_465_cov_1.563953:1-465 [pilon] Processing NODE_5741_length_560_cov_11.353075:1-560 [pilon] NODE_10733_length_297_cov_7.352273:1-297 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 28, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10733_length_297_cov_7.352273:1-297 [pilon] Processing NODE_3021_length_869_cov_13.449198:1-869 [pilon] NODE_7907_length_423_cov_0.788079:1-423 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 423 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7907_length_423_cov_0.788079:1-423 [pilon] Processing NODE_3158_length_840_cov_25.393602:1-840 [pilon] NODE_750_length_1669_cov_12.555556:1-1669 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 519, Coverage: 30, minDepth: 8 [pilon] Confirmed 1412 of 1669 bases (84.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_750_length_1669_cov_12.555556:1-1669 [pilon] Processing NODE_6590_length_498_cov_1.432361:1-498 [pilon] NODE_13573_length_243_cov_17.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13573_length_243_cov_17.729508:1-243 [pilon] Processing NODE_7949_length_420_cov_18.658863:1-420 [pilon] NODE_1350_length_1319_cov_26.443239:1-1319 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 745, Coverage: 62, minDepth: 16 [pilon] Confirmed 1199 of 1319 bases (90.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1350_length_1319_cov_26.443239:1-1319 [pilon] Processing NODE_6580_length_498_cov_15.610080:1-498 [pilon] NODE_12275_length_243_cov_33.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12275_length_243_cov_33.868852:1-243 [pilon] Processing NODE_10886_length_288_cov_26.497006:1-288 [pilon] NODE_4024_length_713_cov_16.089527:1-713 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 221, Coverage: 18, minDepth: 5 [pilon] Confirmed 541 of 713 bases (75.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4024_length_713_cov_16.089527:1-713 [pilon] Processing NODE_5228_length_599_cov_0.661088:1-599 [pilon] NODE_5582_length_572_cov_6.543237:1-572 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 73, Coverage: 10, minDepth: 5 [pilon] Confirmed 337 of 572 bases (58.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5582_length_572_cov_6.543237:1-572 [pilon] Processing NODE_11846_length_252_cov_8.748092:1-252 [pilon] NODE_14218_length_243_cov_12.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14218_length_243_cov_12.467213:1-243 [pilon] Processing NODE_9670_length_339_cov_15.018349:1-339 [pilon] NODE_1804_length_1146_cov_4.628293:1-1146 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 120, Coverage: 13, minDepth: 5 [pilon] Confirmed 1005 of 1146 bases (87.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1804_length_1146_cov_4.628293:1-1146 [pilon] Processing NODE_9219_length_357_cov_15.766949:1-357 [pilon] NODE_11855_length_251_cov_24.853846:1-251 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 78, Coverage: 7, minDepth: 5 [pilon] Confirmed 159 of 251 bases (63.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11855_length_251_cov_24.853846:1-251 [pilon] Processing NODE_6615_length_496_cov_29.037333:1-496 [pilon] NODE_8551_length_391_cov_20.314815:1-391 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 116, Coverage: 13, minDepth: 5 [pilon] Confirmed 245 of 391 bases (62.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8551_length_391_cov_20.314815:1-391 [pilon] Processing NODE_4666_length_647_cov_1.967681:1-647 [pilon] NODE_5071_length_613_cov_1.902439:1-613 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 319 of 613 bases (52.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5071_length_613_cov_1.902439:1-613 [pilon] Processing NODE_11147_length_278_cov_7.955414:1-278 [pilon] NODE_6159_length_528_cov_0.921376:1-528 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 61 of 528 bases (11.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6159_length_528_cov_0.921376:1-528 [pilon] Processing NODE_2946_length_882_cov_16.779238:1-882 [pilon] NODE_14370_length_243_cov_11.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14370_length_243_cov_11.286885:1-243 [pilon] Processing NODE_1191_length_1401_cov_17.550000:1-1401 [pilon] NODE_14638_length_243_cov_9.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14638_length_243_cov_9.122951:1-243 [pilon] Processing NODE_11284_length_273_cov_9.375000:1-273 [pilon] NODE_685_length_1716_cov_14.388088:1-1716 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 657, Coverage: 38, minDepth: 10 [pilon] Confirmed 1346 of 1716 bases (78.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_685_length_1716_cov_14.388088:1-1716 [pilon] NODE_4191_length_695_cov_1.500000:1-695 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 311 of 695 bases (44.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4191_length_695_cov_1.500000:1-695 [pilon] Processing NODE_7170_length_461_cov_17.767647:1-461 [pilon] Processing NODE_227_length_2414_cov_13.072394:1-2414 [pilon] NODE_2194_length_1036_cov_2.111475:1-1036 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 73, Coverage: 8, minDepth: 5 [pilon] Confirmed 931 of 1036 bases (89.86%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2194_length_1036_cov_2.111475:1-1036 [pilon] Processing NODE_2825_length_905_cov_39.951531:1-905 [pilon] NODE_2208_length_1032_cov_1.386389:1-1032 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 38, Coverage: 5, minDepth: 5 [pilon] Confirmed 403 of 1032 bases (39.05%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2208_length_1032_cov_1.386389:1-1032 [pilon] Processing NODE_3300_length_815_cov_8.087896:1-815 [pilon] NODE_13143_length_243_cov_21.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13143_length_243_cov_21.606557:1-243 [pilon] Processing NODE_1582_length_1225_cov_33.210145:1-1225 [pilon] NODE_14912_length_243_cov_6.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14912_length_243_cov_6.565574:1-243 [pilon] Processing NODE_6078_length_534_cov_1.997579:1-534 [pilon] NODE_15029_length_243_cov_5.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15029_length_243_cov_5.090164:1-243 [pilon] Processing NODE_11934_length_248_cov_23.362205:1-248 [pilon] NODE_5741_length_560_cov_11.353075:1-560 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 122, Coverage: 18, minDepth: 5 [pilon] Confirmed 456 of 560 bases (81.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5741_length_560_cov_11.353075:1-560 [pilon] Processing NODE_3171_length_837_cov_10.791899:1-837 [pilon] NODE_4915_length_625_cov_1.440476:1-625 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 27, Coverage: 4, minDepth: 5 [pilon] Confirmed 210 of 625 bases (33.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4915_length_625_cov_1.440476:1-625 [pilon] Processing NODE_1300_length_1341_cov_14.963115:1-1341 [pilon] NODE_4988_length_619_cov_21.070281:1-619 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 242, Coverage: 24, minDepth: 6 [pilon] Confirmed 567 of 619 bases (91.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4988_length_619_cov_21.070281:1-619 [pilon] Processing NODE_10819_length_291_cov_32.011765:1-291 [pilon] NODE_4863_length_629_cov_35.531496:1-629 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 440, Coverage: 41, minDepth: 10 [pilon] Confirmed 433 of 629 bases (68.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4863_length_629_cov_35.531496:1-629 [pilon] Processing NODE_9304_length_354_cov_14.768240:1-354 [pilon] NODE_13203_length_243_cov_21.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13203_length_243_cov_21.057377:1-243 [pilon] Processing NODE_11342_length_270_cov_16.342282:1-270 [pilon] NODE_10886_length_288_cov_26.497006:1-288 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 87, Coverage: 8, minDepth: 5 [pilon] Confirmed 179 of 288 bases (62.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10886_length_288_cov_26.497006:1-288 [pilon] Processing NODE_5802_length_555_cov_3.569124:1-555 [pilon] NODE_7949_length_420_cov_18.658863:1-420 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 128, Coverage: 24, minDepth: 6 [pilon] Confirmed 321 of 420 bases (76.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7949_length_420_cov_18.658863:1-420 [pilon] Processing NODE_4992_length_619_cov_5.688755:1-619 [pilon] NODE_9670_length_339_cov_15.018349:1-339 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 70, Coverage: 10, minDepth: 5 [pilon] Confirmed 230 of 339 bases (67.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9670_length_339_cov_15.018349:1-339 [pilon] Processing NODE_3662_length_760_cov_2.143975:1-760 [pilon] NODE_3021_length_869_cov_13.449198:1-869 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 222, Coverage: 20, minDepth: 5 [pilon] Confirmed 775 of 869 bases (89.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3021_length_869_cov_13.449198:1-869 [pilon] Processing NODE_5212_length_600_cov_25.281837:1-600 [pilon] NODE_6590_length_498_cov_1.432361:1-498 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 20, Coverage: 3, minDepth: 5 [pilon] Confirmed 60 of 498 bases (12.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6590_length_498_cov_1.432361:1-498 [pilon] Processing NODE_8334_length_403_cov_1.631206:1-403 [pilon] NODE_4666_length_647_cov_1.967681:1-647 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 305 of 647 bases (47.14%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4666_length_647_cov_1.967681:1-647 [pilon] Processing NODE_11045_length_282_cov_9.540373:1-282 [pilon] NODE_6580_length_498_cov_15.610080:1-498 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 130, Coverage: 23, minDepth: 6 [pilon] Confirmed 375 of 498 bases (75.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6580_length_498_cov_15.610080:1-498 [pilon] Processing NODE_1195_length_1400_cov_13.493354:1-1400 [pilon] NODE_3158_length_840_cov_25.393602:1-840 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 406, Coverage: 44, minDepth: 11 [pilon] Confirmed 606 of 840 bases (72.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3158_length_840_cov_25.393602:1-840 [pilon] Processing NODE_1859_length_1126_cov_4.083582:1-1126 [pilon] NODE_11846_length_252_cov_8.748092:1-252 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 31, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11846_length_252_cov_8.748092:1-252 [pilon] Processing NODE_3269_length_820_cov_4.542203:1-820 [pilon] NODE_9219_length_357_cov_15.766949:1-357 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 94, Coverage: 14, minDepth: 5 [pilon] Confirmed 277 of 357 bases (77.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9219_length_357_cov_15.766949:1-357 [pilon] Processing NODE_4549_length_657_cov_13.630597:1-657 [pilon] NODE_5228_length_599_cov_0.661088:1-599 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 65 of 599 bases (10.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5228_length_599_cov_0.661088:1-599 [pilon] Processing NODE_12789_length_243_cov_25.098361:1-243 [pilon] NODE_11147_length_278_cov_7.955414:1-278 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 25, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 278 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11147_length_278_cov_7.955414:1-278 [pilon] NODE_2946_length_882_cov_16.779238:1-882 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 293, Coverage: 37, minDepth: 9 [pilon] Confirmed 717 of 882 bases (81.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2946_length_882_cov_16.779238:1-882 [pilon] Processing NODE_6774_length_485_cov_1.706044:1-485 [pilon] Processing NODE_2812_length_907_cov_13.902036:1-907 [pilon] Processing NODE_5039_length_616_cov_3.820202:1-616 [pilon] NODE_1191_length_1401_cov_17.550000:1-1401 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 494, Coverage: 36, minDepth: 9 [pilon] Confirmed 1273 of 1401 bases (90.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1191_length_1401_cov_17.550000:1-1401 [pilon] Processing NODE_13214_length_243_cov_20.959016:1-243 [pilon] NODE_6615_length_496_cov_29.037333:1-496 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 254, Coverage: 36, minDepth: 9 [pilon] Confirmed 415 of 496 bases (83.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6615_length_496_cov_29.037333:1-496 [pilon] Processing NODE_13910_length_243_cov_14.811475:1-243 [pilon] NODE_11284_length_273_cov_9.375000:1-273 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11284_length_273_cov_9.375000:1-273 [pilon] Processing NODE_11305_length_271_cov_20.700000:1-271 [pilon] NODE_7170_length_461_cov_17.767647:1-461 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 216, Coverage: 33, minDepth: 8 [pilon] Confirmed 359 of 461 bases (77.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7170_length_461_cov_17.767647:1-461 [pilon] Processing NODE_113_length_2916_cov_39.312343:1-2916 [pilon] NODE_2825_length_905_cov_39.951531:1-905 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 697, Coverage: 80, minDepth: 20 [pilon] Confirmed 720 of 905 bases (79.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2825_length_905_cov_39.951531:1-905 [pilon] Processing NODE_5104_length_610_cov_2.936605:1-610 [pilon] NODE_227_length_2414_cov_13.072394:1-2414 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 731, Coverage: 32, minDepth: 8 [pilon] Confirmed 2159 of 2414 bases (89.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_227_length_2414_cov_13.072394:1-2414 [pilon] Processing NODE_13756_length_243_cov_15.991803:1-243 [pilon] NODE_11342_length_270_cov_16.342282:1-270 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 47, Coverage: 3, minDepth: 5 [pilon] Confirmed 84 of 270 bases (31.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11342_length_270_cov_16.342282:1-270 [pilon] Processing NODE_12998_length_243_cov_22.926230:1-243 [pilon] NODE_6078_length_534_cov_1.997579:1-534 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 203 of 534 bases (38.01%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6078_length_534_cov_1.997579:1-534 [pilon] Processing NODE_10414_length_308_cov_17.748663:1-308 [pilon] NODE_9304_length_354_cov_14.768240:1-354 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 70, Coverage: 8, minDepth: 5 [pilon] Confirmed 245 of 354 bases (69.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9304_length_354_cov_14.768240:1-354 [pilon] Processing NODE_8674_length_384_cov_12.163498:1-384 [pilon] NODE_3300_length_815_cov_8.087896:1-815 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 159, Coverage: 19, minDepth: 5 [pilon] Confirmed 655 of 815 bases (80.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3300_length_815_cov_8.087896:1-815 [pilon] Processing NODE_13993_length_243_cov_14.221311:1-243 [pilon] NODE_10819_length_291_cov_32.011765:1-291 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 113, Coverage: 15, minDepth: 5 [pilon] Confirmed 243 of 291 bases (83.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10819_length_291_cov_32.011765:1-291 [pilon] Processing NODE_11426_length_267_cov_8.356164:1-267 [pilon] NODE_3171_length_837_cov_10.791899:1-837 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 177, Coverage: 13, minDepth: 5 [pilon] Confirmed 703 of 837 bases (83.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3171_length_837_cov_10.791899:1-837 [pilon] Processing NODE_4225_length_691_cov_3.587719:1-691 [pilon] NODE_1582_length_1225_cov_33.210145:1-1225 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 1056, Coverage: 63, minDepth: 16 [pilon] Confirmed 914 of 1225 bases (74.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1582_length_1225_cov_33.210145:1-1225 [pilon] Processing NODE_9478_length_347_cov_8.097345:1-347 [pilon] NODE_1300_length_1341_cov_14.963115:1-1341 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 431, Coverage: 28, minDepth: 7 [pilon] Confirmed 763 of 1341 bases (56.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1300_length_1341_cov_14.963115:1-1341 [pilon] Processing NODE_2705_length_928_cov_25.029740:1-928 [pilon] NODE_11934_length_248_cov_23.362205:1-248 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 68, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 248 bases (52.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11934_length_248_cov_23.362205:1-248 [pilon] Processing NODE_10234_length_315_cov_26.613402:1-315 [pilon] NODE_4992_length_619_cov_5.688755:1-619 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 109, Coverage: 5, minDepth: 5 [pilon] Confirmed 227 of 619 bases (36.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4992_length_619_cov_5.688755:1-619 [pilon] Processing NODE_4755_length_639_cov_3.654440:1-639 [pilon] NODE_5802_length_555_cov_3.569124:1-555 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 41, Coverage: 10, minDepth: 5 [pilon] Confirmed 469 of 555 bases (84.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5802_length_555_cov_3.569124:1-555 [pilon] Processing NODE_2461_length_975_cov_20.487119:1-975 [pilon] NODE_3662_length_760_cov_2.143975:1-760 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 292 of 760 bases (38.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3662_length_760_cov_2.143975:1-760 [pilon] Processing NODE_15088_length_230_cov_5.229358:1-230 [pilon] NODE_8334_length_403_cov_1.631206:1-403 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 15, Coverage: 4, minDepth: 5 [pilon] Confirmed 160 of 403 bases (39.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8334_length_403_cov_1.631206:1-403 [pilon] Processing NODE_15087_length_230_cov_50.201835:1-230 [pilon] NODE_5212_length_600_cov_25.281837:1-600 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 322, Coverage: 29, minDepth: 7 [pilon] Confirmed 322 of 600 bases (53.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5212_length_600_cov_25.281837:1-600 [pilon] Processing NODE_10025_length_324_cov_22.339901:1-324 [pilon] NODE_13214_length_243_cov_20.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13214_length_243_cov_20.959016:1-243 [pilon] Processing NODE_7054_length_468_cov_1.144092:1-468 [pilon] NODE_1195_length_1400_cov_13.493354:1-1400 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 533, Coverage: 47, minDepth: 12 [pilon] Confirmed 1271 of 1400 bases (90.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1195_length_1400_cov_13.493354:1-1400 [pilon] Processing NODE_5769_length_558_cov_3.709382:1-558 [pilon] NODE_11045_length_282_cov_9.540373:1-282 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 37, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 282 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11045_length_282_cov_9.540373:1-282 [pilon] Processing NODE_8959_length_368_cov_50.991903:1-368 [pilon] NODE_3269_length_820_cov_4.542203:1-820 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 86, Coverage: 7, minDepth: 5 [pilon] Confirmed 502 of 820 bases (61.22%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3269_length_820_cov_4.542203:1-820 [pilon] Processing NODE_7665_length_434_cov_56.683706:1-434 [pilon] NODE_113_length_2916_cov_39.312343:1-2916 log: [pilon] frags shovill.bam: coverage 108 [pilon] Total Reads: 2557, Coverage: 108, minDepth: 27 [pilon] Confirmed 2587 of 2916 bases (88.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_113_length_2916_cov_39.312343:1-2916 [pilon] Processing NODE_14897_length_243_cov_6.745902:1-243 [pilon] NODE_12789_length_243_cov_25.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12789_length_243_cov_25.098361:1-243 [pilon] Processing NODE_9474_length_347_cov_18.216814:1-347 [pilon] NODE_4549_length_657_cov_13.630597:1-657 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 163, Coverage: 25, minDepth: 6 [pilon] Confirmed 451 of 657 bases (68.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4549_length_657_cov_13.630597:1-657 [pilon] Processing NODE_3557_length_776_cov_36.583206:1-776 [pilon] NODE_1859_length_1126_cov_4.083582:1-1126 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 102, Coverage: 12, minDepth: 5 [pilon] Confirmed 781 of 1126 bases (69.36%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1859_length_1126_cov_4.083582:1-1126 [pilon] Processing NODE_7396_length_448_cov_27.776758:1-448 [pilon] NODE_13910_length_243_cov_14.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13910_length_243_cov_14.811475:1-243 [pilon] Processing NODE_8844_length_375_cov_11.303150:1-375 [pilon] NODE_11305_length_271_cov_20.700000:1-271 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 71, Coverage: 5, minDepth: 5 [pilon] Confirmed 153 of 271 bases (56.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11305_length_271_cov_20.700000:1-271 [pilon] Processing NODE_7271_length_456_cov_13.850746:1-456 [pilon] NODE_5104_length_610_cov_2.936605:1-610 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 414 of 610 bases (67.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5104_length_610_cov_2.936605:1-610 [pilon] Processing NODE_184_length_2557_cov_21.404351:1-2557 [pilon] NODE_5039_length_616_cov_3.820202:1-616 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 50, Coverage: 10, minDepth: 5 [pilon] Confirmed 473 of 616 bases (76.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5039_length_616_cov_3.820202:1-616 [pilon] Processing NODE_13705_length_243_cov_16.393443:1-243 [pilon] NODE_6774_length_485_cov_1.706044:1-485 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 273 of 485 bases (56.29%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6774_length_485_cov_1.706044:1-485 [pilon] Processing NODE_13908_length_243_cov_14.827869:1-243 [pilon] NODE_2812_length_907_cov_13.902036:1-907 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 260, Coverage: 32, minDepth: 8 [pilon] Confirmed 638 of 907 bases (70.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2812_length_907_cov_13.902036:1-907 [pilon] Processing NODE_13174_length_243_cov_21.336066:1-243 [pilon] NODE_12998_length_243_cov_22.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12998_length_243_cov_22.926230:1-243 [pilon] Processing NODE_13624_length_243_cov_17.254098:1-243 [pilon] NODE_13756_length_243_cov_15.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13756_length_243_cov_15.991803:1-243 [pilon] Processing NODE_9300_length_354_cov_15.596567:1-354 [pilon] NODE_8674_length_384_cov_12.163498:1-384 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 93, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 384 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8674_length_384_cov_12.163498:1-384 [pilon] Processing NODE_11382_length_268_cov_5.340136:1-268 [pilon] NODE_10414_length_308_cov_17.748663:1-308 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 72, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 308 bases (42.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10414_length_308_cov_17.748663:1-308 [pilon] Processing NODE_1134_length_1424_cov_12.122026:1-1424 [pilon] NODE_9478_length_347_cov_8.097345:1-347 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 43, Coverage: 10, minDepth: 5 [pilon] Confirmed 270 of 347 bases (77.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9478_length_347_cov_8.097345:1-347 [pilon] Processing NODE_3221_length_830_cov_14.981664:1-830 [pilon] NODE_4755_length_639_cov_3.654440:1-639 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 46, Coverage: 9, minDepth: 5 [pilon] Confirmed 488 of 639 bases (76.37%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4755_length_639_cov_3.654440:1-639 [pilon] Processing NODE_515_length_1903_cov_1.273288:1-1903 [pilon] NODE_11426_length_267_cov_8.356164:1-267 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 30, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11426_length_267_cov_8.356164:1-267 [pilon] Processing NODE_15155_length_187_cov_5.636364:1-187 [pilon] NODE_2705_length_928_cov_25.029740:1-928 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 481, Coverage: 30, minDepth: 8 [pilon] Confirmed 607 of 928 bases (65.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2705_length_928_cov_25.029740:1-928 [pilon] Processing NODE_15220_length_148_cov_35.629630:1-148 [pilon] NODE_4225_length_691_cov_3.587719:1-691 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 67, Coverage: 13, minDepth: 5 [pilon] Confirmed 412 of 691 bases (59.62%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4225_length_691_cov_3.587719:1-691 [pilon] Processing NODE_592_length_1820_cov_2.605062:1-1820 [pilon] NODE_2461_length_975_cov_20.487119:1-975 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 437, Coverage: 37, minDepth: 9 [pilon] Confirmed 894 of 975 bases (91.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2461_length_975_cov_20.487119:1-975 [pilon] Processing NODE_7348_length_450_cov_32.091185:1-450 [pilon] NODE_10234_length_315_cov_26.613402:1-315 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 115, Coverage: 13, minDepth: 5 [pilon] Confirmed 249 of 315 bases (79.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10234_length_315_cov_26.613402:1-315 [pilon] Processing NODE_10980_length_285_cov_15.231707:1-285 [pilon] NODE_15087_length_230_cov_50.201835:1-230 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 126, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 230 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15087_length_230_cov_50.201835:1-230 [pilon] Processing NODE_6678_length_492_cov_15.681941:1-492 [pilon] NODE_14897_length_243_cov_6.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14897_length_243_cov_6.745902:1-243 [pilon] Processing NODE_818_length_1615_cov_8.313922:1-1615 [pilon] NODE_13993_length_243_cov_14.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13993_length_243_cov_14.221311:1-243 [pilon] Processing NODE_3981_length_717_cov_1.941275:1-717 [pilon] NODE_10025_length_324_cov_22.339901:1-324 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 113, Coverage: 17, minDepth: 5 [pilon] Confirmed 286 of 324 bases (88.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10025_length_324_cov_22.339901:1-324 [pilon] Processing NODE_742_length_1671_cov_17.543871:1-1671 [pilon] NODE_15088_length_230_cov_5.229358:1-230 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 230 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15088_length_230_cov_5.229358:1-230 [pilon] Processing NODE_8901_length_372_cov_9.976096:1-372 [pilon] NODE_7054_length_468_cov_1.144092:1-468 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 15, Coverage: 4, minDepth: 5 [pilon] Confirmed 203 of 468 bases (43.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7054_length_468_cov_1.144092:1-468 [pilon] Processing NODE_10238_length_315_cov_21.809278:1-315 [pilon] NODE_5769_length_558_cov_3.709382:1-558 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 59, Coverage: 12, minDepth: 5 [pilon] Confirmed 517 of 558 bases (92.65%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5769_length_558_cov_3.709382:1-558 [pilon] Processing NODE_1112_length_1436_cov_9.013688:1-1436 [pilon] NODE_8959_length_368_cov_50.991903:1-368 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 301, Coverage: 50, minDepth: 13 [pilon] Confirmed 318 of 368 bases (86.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8959_length_368_cov_50.991903:1-368 [pilon] Processing NODE_4207_length_693_cov_23.062937:1-693 [pilon] NODE_9474_length_347_cov_18.216814:1-347 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 95, Coverage: 9, minDepth: 5 [pilon] Confirmed 214 of 347 bases (61.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9474_length_347_cov_18.216814:1-347 [pilon] Processing NODE_7680_length_433_cov_52.294872:1-433 [pilon] NODE_3557_length_776_cov_36.583206:1-776 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 550, Coverage: 52, minDepth: 13 [pilon] Confirmed 555 of 776 bases (71.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3557_length_776_cov_36.583206:1-776 [pilon] Processing NODE_3697_length_755_cov_0.990536:1-755 [pilon] NODE_8844_length_375_cov_11.303150:1-375 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 71, Coverage: 10, minDepth: 5 [pilon] Confirmed 306 of 375 bases (81.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8844_length_375_cov_11.303150:1-375 [pilon] Processing NODE_6595_length_497_cov_45.566489:1-497 [pilon] NODE_7665_length_434_cov_56.683706:1-434 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 421, Coverage: 74, minDepth: 19 [pilon] Confirmed 379 of 434 bases (87.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7665_length_434_cov_56.683706:1-434 [pilon] Processing NODE_22_length_4902_cov_12.849613:1-4902 [pilon] NODE_7271_length_456_cov_13.850746:1-456 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 93, Coverage: 10, minDepth: 5 [pilon] Confirmed 375 of 456 bases (82.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7271_length_456_cov_13.850746:1-456 [pilon] Processing NODE_11886_length_249_cov_25.703125:1-249 [pilon] NODE_7396_length_448_cov_27.776758:1-448 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 184, Coverage: 10, minDepth: 5 [pilon] Confirmed 259 of 448 bases (57.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7396_length_448_cov_27.776758:1-448 [pilon] Processing NODE_12016_length_246_cov_13.880000:1-246 [pilon] NODE_13705_length_243_cov_16.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13705_length_243_cov_16.393443:1-243 [pilon] Processing NODE_2292_length_1012_cov_46.120090:1-1012 [pilon] NODE_13908_length_243_cov_14.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13908_length_243_cov_14.827869:1-243 [pilon] Processing NODE_12556_length_243_cov_28.196721:1-243 [pilon] NODE_184_length_2557_cov_21.404351:1-2557 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 1160, Coverage: 59, minDepth: 15 [pilon] Confirmed 2236 of 2557 bases (87.45%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_184_length_2557_cov_21.404351:1-2557 [pilon] Processing NODE_12246_length_243_cov_34.737705:1-243 [pilon] NODE_13174_length_243_cov_21.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13174_length_243_cov_21.336066:1-243 [pilon] Processing NODE_269_length_2296_cov_17.445977:1-2296 [pilon] NODE_13624_length_243_cov_17.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13624_length_243_cov_17.254098:1-243 [pilon] Processing NODE_5400_length_584_cov_16.097192:1-584 [pilon] NODE_515_length_1903_cov_1.273288:1-1903 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 75, Coverage: 5, minDepth: 5 [pilon] Confirmed 888 of 1903 bases (46.66%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_515_length_1903_cov_1.273288:1-1903 [pilon] Processing NODE_6973_length_473_cov_23.971591:1-473 [pilon] NODE_9300_length_354_cov_15.596567:1-354 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 53, Coverage: 2, minDepth: 5 [pilon] Confirmed 116 of 354 bases (32.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9300_length_354_cov_15.596567:1-354 [pilon] Processing NODE_11036_length_282_cov_14.757764:1-282 [pilon] NODE_7348_length_450_cov_32.091185:1-450 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 222, Coverage: 35, minDepth: 9 [pilon] Confirmed 318 of 450 bases (70.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7348_length_450_cov_32.091185:1-450 [pilon] Processing NODE_8410_length_399_cov_15.284173:1-399 [pilon] NODE_15220_length_148_cov_35.629630:1-148 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 148 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15220_length_148_cov_35.629630:1-148 [pilon] Processing NODE_12142_length_243_cov_40.270492:1-243 [pilon] NODE_1134_length_1424_cov_12.122026:1-1424 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 446, Coverage: 35, minDepth: 9 [pilon] Confirmed 1318 of 1424 bases (92.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1134_length_1424_cov_12.122026:1-1424 [pilon] Processing NODE_4800_length_634_cov_38.187135:1-634 [pilon] NODE_11382_length_268_cov_5.340136:1-268 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 268 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11382_length_268_cov_5.340136:1-268 [pilon] Processing NODE_2939_length_884_cov_3.859764:1-884 [pilon] NODE_3221_length_830_cov_14.981664:1-830 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 282, Coverage: 30, minDepth: 8 [pilon] Confirmed 384 of 830 bases (46.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3221_length_830_cov_14.981664:1-830 [pilon] Processing NODE_7510_length_443_cov_0.813665:1-443 [pilon] NODE_15155_length_187_cov_5.636364:1-187 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 187 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15155_length_187_cov_5.636364:1-187 [pilon] Processing NODE_14049_length_243_cov_13.844262:1-243 [pilon] NODE_592_length_1820_cov_2.605062:1-1820 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 136, Coverage: 9, minDepth: 5 [pilon] Confirmed 1323 of 1820 bases (72.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_592_length_1820_cov_2.605062:1-1820 [pilon] Processing NODE_140_length_2780_cov_15.466341:1-2780 [pilon] NODE_10980_length_285_cov_15.231707:1-285 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 60, Coverage: 4, minDepth: 5 [pilon] Confirmed 101 of 285 bases (35.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10980_length_285_cov_15.231707:1-285 [pilon] Processing NODE_5957_length_544_cov_10.349882:1-544 [pilon] NODE_3981_length_717_cov_1.941275:1-717 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 254 of 717 bases (35.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3981_length_717_cov_1.941275:1-717 [pilon] Processing NODE_5909_length_547_cov_11.323944:1-547 [pilon] NODE_6678_length_492_cov_15.681941:1-492 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 137, Coverage: 22, minDepth: 6 [pilon] Confirmed 430 of 492 bases (87.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6678_length_492_cov_15.681941:1-492 [pilon] Processing NODE_12815_length_243_cov_24.877049:1-243 [pilon] NODE_8901_length_372_cov_9.976096:1-372 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 62, Coverage: 5, minDepth: 5 [pilon] Confirmed 196 of 372 bases (52.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8901_length_372_cov_9.976096:1-372 [pilon] Processing NODE_4314_length_679_cov_11.055556:1-679 [pilon] NODE_818_length_1615_cov_8.313922:1-1615 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 317, Coverage: 18, minDepth: 5 [pilon] Confirmed 1447 of 1615 bases (89.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_818_length_1615_cov_8.313922:1-1615 [pilon] Processing NODE_13554_length_243_cov_17.909836:1-243 [pilon] NODE_742_length_1671_cov_17.543871:1-1671 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 595, Coverage: 32, minDepth: 8 [pilon] Confirmed 1309 of 1671 bases (78.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_742_length_1671_cov_17.543871:1-1671 [pilon] Processing NODE_255_length_2321_cov_25.955000:1-2321 [pilon] NODE_10238_length_315_cov_21.809278:1-315 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 96, Coverage: 12, minDepth: 5 [pilon] Confirmed 253 of 315 bases (80.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10238_length_315_cov_21.809278:1-315 [pilon] Processing NODE_14883_length_243_cov_6.885246:1-243 [pilon] NODE_4207_length_693_cov_23.062937:1-693 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 310, Coverage: 32, minDepth: 8 [pilon] Confirmed 403 of 693 bases (58.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4207_length_693_cov_23.062937:1-693 [pilon] Processing NODE_11564_length_261_cov_26.307143:1-261 [pilon] NODE_7680_length_433_cov_52.294872:1-433 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 366, Coverage: 60, minDepth: 15 [pilon] Confirmed 368 of 433 bases (84.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7680_length_433_cov_52.294872:1-433 [pilon] Processing NODE_13468_length_243_cov_18.704918:1-243 [pilon] NODE_3697_length_755_cov_0.990536:1-755 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 29, Coverage: 4, minDepth: 5 [pilon] Confirmed 349 of 755 bases (46.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3697_length_755_cov_0.990536:1-755 [pilon] Processing NODE_6730_length_488_cov_35.062670:1-488 [pilon] NODE_1112_length_1436_cov_9.013688:1-1436 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 322, Coverage: 18, minDepth: 5 [pilon] Confirmed 1096 of 1436 bases (76.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1112_length_1436_cov_9.013688:1-1436 [pilon] Processing NODE_2766_length_915_cov_1.433249:1-915 [pilon] NODE_11886_length_249_cov_25.703125:1-249 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 72, Coverage: 9, minDepth: 5 [pilon] Confirmed 199 of 249 bases (79.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11886_length_249_cov_25.703125:1-249 [pilon] Processing NODE_2309_length_1008_cov_18.519729:1-1008 [pilon] NODE_6595_length_497_cov_45.566489:1-497 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 389, Coverage: 50, minDepth: 13 [pilon] Confirmed 439 of 497 bases (88.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6595_length_497_cov_45.566489:1-497 [pilon] Processing NODE_1381_length_1304_cov_17.807270:1-1304 [pilon] NODE_6973_length_473_cov_23.971591:1-473 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 231, Coverage: 27, minDepth: 7 [pilon] Confirmed 408 of 473 bases (86.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6973_length_473_cov_23.971591:1-473 [pilon] Processing NODE_10808_length_292_cov_23.175439:1-292 [pilon] NODE_12016_length_246_cov_13.880000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 39, Coverage: 3, minDepth: 5 [pilon] Confirmed 35 of 246 bases (14.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12016_length_246_cov_13.880000:1-246 [pilon] Processing NODE_14136_length_243_cov_13.245902:1-243 [pilon] NODE_12556_length_243_cov_28.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12556_length_243_cov_28.196721:1-243 [pilon] Processing NODE_9596_length_342_cov_14.131222:1-342 [pilon] NODE_2292_length_1012_cov_46.120090:1-1012 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 1005, Coverage: 81, minDepth: 20 [pilon] Confirmed 835 of 1012 bases (82.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2292_length_1012_cov_46.120090:1-1012 [pilon] Processing NODE_7541_length_441_cov_20.090625:1-441 [pilon] NODE_12246_length_243_cov_34.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 94, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12246_length_243_cov_34.737705:1-243 [pilon] Processing NODE_11062_length_281_cov_6.337500:1-281 [pilon] NODE_5400_length_584_cov_16.097192:1-584 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 201, Coverage: 24, minDepth: 6 [pilon] Confirmed 419 of 584 bases (71.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5400_length_584_cov_16.097192:1-584 [pilon] Processing NODE_13479_length_243_cov_18.606557:1-243 [pilon] NODE_22_length_4902_cov_12.849613:1-4902 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 1472, Coverage: 36, minDepth: 9 [pilon] Confirmed 4151 of 4902 bases (84.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_22_length_4902_cov_12.849613:1-4902 [pilon] Processing NODE_13949_length_243_cov_14.516393:1-243 [pilon] NODE_269_length_2296_cov_17.445977:1-2296 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 922, Coverage: 35, minDepth: 9 [pilon] Confirmed 2190 of 2296 bases (95.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_269_length_2296_cov_17.445977:1-2296 [pilon] Processing NODE_4845_length_631_cov_4.127451:1-631 [pilon] NODE_11036_length_282_cov_14.757764:1-282 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 50, Coverage: 9, minDepth: 5 [pilon] Confirmed 191 of 282 bases (67.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11036_length_282_cov_14.757764:1-282 [pilon] Processing NODE_6477_length_505_cov_7.145833:1-505 [pilon] NODE_7510_length_443_cov_0.813665:1-443 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 99 of 443 bases (22.35%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7510_length_443_cov_0.813665:1-443 [pilon] Processing NODE_13053_length_243_cov_22.368852:1-243 [pilon] NODE_12142_length_243_cov_40.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 96, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12142_length_243_cov_40.270492:1-243 [pilon] Processing NODE_13295_length_243_cov_20.278689:1-243 [pilon] NODE_8410_length_399_cov_15.284173:1-399 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 101, Coverage: 14, minDepth: 5 [pilon] Confirmed 296 of 399 bases (74.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8410_length_399_cov_15.284173:1-399 [pilon] Processing NODE_8155_length_411_cov_2.734483:1-411 [pilon] NODE_14049_length_243_cov_13.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14049_length_243_cov_13.844262:1-243 [pilon] Processing NODE_10054_length_323_cov_19.990099:1-323 [pilon] NODE_2939_length_884_cov_3.859764:1-884 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 72, Coverage: 9, minDepth: 5 [pilon] Confirmed 506 of 884 bases (57.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2939_length_884_cov_3.859764:1-884 [pilon] Processing NODE_2142_length_1048_cov_14.069040:1-1048 [pilon] NODE_4800_length_634_cov_38.187135:1-634 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 433, Coverage: 65, minDepth: 16 [pilon] Confirmed 520 of 634 bases (82.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4800_length_634_cov_38.187135:1-634 [pilon] Processing NODE_10648_length_300_cov_11.474860:1-300 [pilon] NODE_11564_length_261_cov_26.307143:1-261 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 80, Coverage: 12, minDepth: 5 [pilon] Confirmed 218 of 261 bases (83.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11564_length_261_cov_26.307143:1-261 [pilon] Processing NODE_4269_length_685_cov_1.865248:1-685 [pilon] NODE_12815_length_243_cov_24.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12815_length_243_cov_24.877049:1-243 [pilon] Processing NODE_200_length_2498_cov_7.501472:1-2498 [pilon] NODE_5957_length_544_cov_10.349882:1-544 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 117, Coverage: 16, minDepth: 5 [pilon] Confirmed 413 of 544 bases (75.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5957_length_544_cov_10.349882:1-544 [pilon] Processing NODE_4410_length_670_cov_38.983607:1-670 [pilon] NODE_5909_length_547_cov_11.323944:1-547 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 178, Coverage: 18, minDepth: 5 [pilon] Confirmed 443 of 547 bases (80.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5909_length_547_cov_11.323944:1-547 [pilon] Processing NODE_14107_length_243_cov_13.426230:1-243 [pilon] NODE_4314_length_679_cov_11.055556:1-679 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 135, Coverage: 23, minDepth: 6 [pilon] Confirmed 540 of 679 bases (79.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4314_length_679_cov_11.055556:1-679 [pilon] Processing NODE_524_length_1894_cov_2.232375:1-1894 [pilon] NODE_14883_length_243_cov_6.885246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14883_length_243_cov_6.885246:1-243 [pilon] NODE_13554_length_243_cov_17.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13554_length_243_cov_17.909836:1-243 [pilon] Processing NODE_7385_length_449_cov_2.478659:1-449 [pilon] Processing NODE_1273_length_1352_cov_24.478473:1-1352 [pilon] NODE_140_length_2780_cov_15.466341:1-2780 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 1012, Coverage: 43, minDepth: 11 [pilon] Confirmed 2463 of 2780 bases (88.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_140_length_2780_cov_15.466341:1-2780 [pilon] Processing NODE_794_length_1629_cov_15.671751:1-1629 [pilon] NODE_13468_length_243_cov_18.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13468_length_243_cov_18.704918:1-243 [pilon] Processing NODE_965_length_1516_cov_3.031541:1-1516 [pilon] NODE_10808_length_292_cov_23.175439:1-292 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 90, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 292 bases (44.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10808_length_292_cov_23.175439:1-292 [pilon] Processing NODE_10882_length_288_cov_35.568862:1-288 [pilon] NODE_2309_length_1008_cov_18.519729:1-1008 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 462, Coverage: 59, minDepth: 15 [pilon] Confirmed 670 of 1008 bases (66.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2309_length_1008_cov_18.519729:1-1008 [pilon] NODE_2766_length_915_cov_1.433249:1-915 log: [pilon] Processing NODE_2572_length_953_cov_1.037260:1-953 [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 31, Coverage: 4, minDepth: 5 [pilon] Confirmed 294 of 915 bases (32.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2766_length_915_cov_1.433249:1-915 [pilon] Processing NODE_5577_length_572_cov_22.640798:1-572 [pilon] NODE_255_length_2321_cov_25.955000:1-2321 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 1307, Coverage: 68, minDepth: 17 [pilon] Confirmed 1901 of 2321 bases (81.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_255_length_2321_cov_25.955000:1-2321 [pilon] Processing NODE_1903_length_1112_cov_12.381433:1-1112 [pilon] NODE_6730_length_488_cov_35.062670:1-488 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 262, Coverage: 44, minDepth: 11 [pilon] Confirmed 391 of 488 bases (80.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6730_length_488_cov_35.062670:1-488 [pilon] Processing NODE_10564_length_303_cov_8.280220:1-303 [pilon] NODE_7541_length_441_cov_20.090625:1-441 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 145, Coverage: 20, minDepth: 5 [pilon] Confirmed 369 of 441 bases (83.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7541_length_441_cov_20.090625:1-441 [pilon] Processing NODE_12295_length_243_cov_33.254098:1-243 [pilon] NODE_1381_length_1304_cov_17.807270:1-1304 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 532, Coverage: 26, minDepth: 7 [pilon] Confirmed 1030 of 1304 bases (78.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1381_length_1304_cov_17.807270:1-1304 [pilon] Processing NODE_9155_length_359_cov_49.815126:1-359 [pilon] NODE_14136_length_243_cov_13.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14136_length_243_cov_13.245902:1-243 [pilon] Processing NODE_8288_length_405_cov_11.876761:1-405 [pilon] NODE_9596_length_342_cov_14.131222:1-342 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 67, Coverage: 10, minDepth: 5 [pilon] Confirmed 234 of 342 bases (68.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9596_length_342_cov_14.131222:1-342 [pilon] Processing NODE_3683_length_757_cov_16.020440:1-757 [pilon] NODE_8155_length_411_cov_2.734483:1-411 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 22, Coverage: 7, minDepth: 5 [pilon] Confirmed 312 of 411 bases (75.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8155_length_411_cov_2.734483:1-411 [pilon] Processing NODE_8746_length_380_cov_27.347490:1-380 [pilon] NODE_13053_length_243_cov_22.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13053_length_243_cov_22.368852:1-243 [pilon] Processing NODE_3379_length_800_cov_20.300442:1-800 [pilon] NODE_11062_length_281_cov_6.337500:1-281 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 17, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 281 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11062_length_281_cov_6.337500:1-281 [pilon] Processing NODE_745_length_1671_cov_2.528387:1-1671 [pilon] NODE_6477_length_505_cov_7.145833:1-505 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 64, Coverage: 10, minDepth: 5 [pilon] Confirmed 356 of 505 bases (70.50%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6477_length_505_cov_7.145833:1-505 [pilon] Processing NODE_3995_length_715_cov_34.720539:1-715 [pilon] NODE_13949_length_243_cov_14.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13949_length_243_cov_14.516393:1-243 [pilon] Processing NODE_1963_length_1095_cov_2.680698:1-1095 [pilon] NODE_13479_length_243_cov_18.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13479_length_243_cov_18.606557:1-243 [pilon] Processing NODE_14296_length_243_cov_11.860656:1-243 [pilon] NODE_4845_length_631_cov_4.127451:1-631 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 63, Coverage: 12, minDepth: 5 [pilon] Confirmed 499 of 631 bases (79.08%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4845_length_631_cov_4.127451:1-631 [pilon] Processing NODE_5846_length_552_cov_2.902552:1-552 [pilon] NODE_2142_length_1048_cov_14.069040:1-1048 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 349, Coverage: 35, minDepth: 9 [pilon] Confirmed 969 of 1048 bases (92.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2142_length_1048_cov_14.069040:1-1048 [pilon] Processing NODE_3056_length_861_cov_31.220270:1-861 [pilon] NODE_4269_length_685_cov_1.865248:1-685 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 42, Coverage: 7, minDepth: 5 [pilon] Confirmed 466 of 685 bases (68.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4269_length_685_cov_1.865248:1-685 [pilon] Processing NODE_14213_length_243_cov_12.516393:1-243 [pilon] NODE_13295_length_243_cov_20.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13295_length_243_cov_20.278689:1-243 [pilon] Processing NODE_2141_length_1049_cov_0.915948:1-1049 [pilon] NODE_10054_length_323_cov_19.990099:1-323 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 88, Coverage: 19, minDepth: 5 [pilon] Confirmed 299 of 323 bases (92.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10054_length_323_cov_19.990099:1-323 [pilon] Processing NODE_9150_length_360_cov_9.682008:1-360 [pilon] NODE_10648_length_300_cov_11.474860:1-300 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 50, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10648_length_300_cov_11.474860:1-300 [pilon] Processing NODE_7709_length_432_cov_14.739550:1-432 [pilon] NODE_524_length_1894_cov_2.232375:1-1894 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 121, Coverage: 8, minDepth: 5 [pilon] Confirmed 1414 of 1894 bases (74.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_524_length_1894_cov_2.232375:1-1894 [pilon] Processing NODE_10409_length_308_cov_25.347594:1-308 [pilon] NODE_14107_length_243_cov_13.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14107_length_243_cov_13.426230:1-243 [pilon] Processing NODE_14474_length_243_cov_10.467213:1-243 [pilon] NODE_7385_length_449_cov_2.478659:1-449 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 20, Coverage: 6, minDepth: 5 [pilon] Confirmed 286 of 449 bases (63.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7385_length_449_cov_2.478659:1-449 [pilon] Processing NODE_8238_length_407_cov_3.856643:1-407 [pilon] NODE_4410_length_670_cov_38.983607:1-670 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 507, Coverage: 69, minDepth: 17 [pilon] Confirmed 565 of 670 bases (84.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4410_length_670_cov_38.983607:1-670 [pilon] NODE_10882_length_288_cov_35.568862:1-288 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 120, Coverage: 9, minDepth: 5 [pilon] Confirmed 204 of 288 bases (70.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10882_length_288_cov_35.568862:1-288 [pilon] Processing NODE_10639_length_300_cov_14.525140:1-300 [pilon] Processing NODE_6818_length_482_cov_1.698061:1-482 [pilon] NODE_3379_length_800_cov_20.300442:1-800 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 333, Coverage: 27, minDepth: 7 [pilon] Confirmed 709 of 800 bases (88.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_8746_length_380_cov_27.347490:1-380 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 158, Coverage: 21, minDepth: 5 [pilon] Confirmed 304 of 380 bases (80.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3379_length_800_cov_20.300442:1-800 [pilon] Finished processing NODE_8746_length_380_cov_27.347490:1-380 [pilon] Processing NODE_6133_length_529_cov_22.453431:1-529 [pilon] Processing NODE_14692_length_243_cov_8.647541:1-243 [pilon] NODE_200_length_2498_cov_7.501472:1-2498 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 426, Coverage: 22, minDepth: 6 [pilon] Confirmed 2392 of 2498 bases (95.76%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_200_length_2498_cov_7.501472:1-2498 [pilon] Processing NODE_4758_length_639_cov_2.119691:1-639 [pilon] NODE_1273_length_1352_cov_24.478473:1-1352 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 698, Coverage: 52, minDepth: 13 [pilon] Confirmed 1097 of 1352 bases (81.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1273_length_1352_cov_24.478473:1-1352 [pilon] Processing NODE_7600_length_438_cov_2.419558:1-438 [pilon] NODE_794_length_1629_cov_15.671751:1-1629 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 664, Coverage: 45, minDepth: 11 [pilon] Confirmed 1476 of 1629 bases (90.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_794_length_1629_cov_15.671751:1-1629 [pilon] Processing NODE_1416_length_1292_cov_24.770282:1-1292 [pilon] NODE_965_length_1516_cov_3.031541:1-1516 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 117, Coverage: 10, minDepth: 5 [pilon] Confirmed 1102 of 1516 bases (72.69%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_965_length_1516_cov_3.031541:1-1516 [pilon] Processing NODE_9958_length_327_cov_22.441748:1-327 [pilon] NODE_9155_length_359_cov_49.815126:1-359 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 269, Coverage: 43, minDepth: 11 [pilon] Confirmed 329 of 359 bases (91.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9155_length_359_cov_49.815126:1-359 [pilon] Processing NODE_4973_length_620_cov_23.006012:1-620 [pilon] NODE_1903_length_1112_cov_12.381433:1-1112 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 300, Coverage: 35, minDepth: 9 [pilon] Confirmed 739 of 1112 bases (66.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1903_length_1112_cov_12.381433:1-1112 [pilon] Processing NODE_3847_length_734_cov_32.820555:1-734 [pilon] NODE_2572_length_953_cov_1.037260:1-953 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 24, Coverage: 3, minDepth: 5 [pilon] Confirmed 178 of 953 bases (18.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2572_length_953_cov_1.037260:1-953 [pilon] Processing NODE_12276_length_243_cov_33.754098:1-243 [pilon] NODE_14213_length_243_cov_12.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14213_length_243_cov_12.516393:1-243 [pilon] Processing NODE_601_length_1810_cov_2.047957:1-1810 [pilon] NODE_5577_length_572_cov_22.640798:1-572 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 273, Coverage: 27, minDepth: 7 [pilon] Confirmed 351 of 572 bases (61.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5577_length_572_cov_22.640798:1-572 [pilon] Processing NODE_2605_length_945_cov_2.205097:1-945 [pilon] NODE_10564_length_303_cov_8.280220:1-303 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 303 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10564_length_303_cov_8.280220:1-303 [pilon] Processing NODE_9521_length_345_cov_15.535714:1-345 [pilon] NODE_12295_length_243_cov_33.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12295_length_243_cov_33.254098:1-243 [pilon] Processing NODE_12865_length_243_cov_24.352459:1-243 [pilon] NODE_8288_length_405_cov_11.876761:1-405 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 69, Coverage: 8, minDepth: 5 [pilon] Confirmed 241 of 405 bases (59.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8288_length_405_cov_11.876761:1-405 [pilon] Processing NODE_13531_length_243_cov_18.065574:1-243 [pilon] NODE_3683_length_757_cov_16.020440:1-757 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 266, Coverage: 21, minDepth: 5 [pilon] Confirmed 490 of 757 bases (64.73%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3683_length_757_cov_16.020440:1-757 [pilon] Processing NODE_5946_length_545_cov_1.323113:1-545 [pilon] NODE_745_length_1671_cov_2.528387:1-1671 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 102, Coverage: 8, minDepth: 5 [pilon] Confirmed 1222 of 1671 bases (73.13%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_745_length_1671_cov_2.528387:1-1671 [pilon] Processing NODE_3033_length_867_cov_22.572386:1-867 [pilon] NODE_3995_length_715_cov_34.720539:1-715 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 515, Coverage: 55, minDepth: 14 [pilon] Confirmed 548 of 715 bases (76.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3995_length_715_cov_34.720539:1-715 [pilon] Processing NODE_9470_length_347_cov_24.030973:1-347 [pilon] NODE_1963_length_1095_cov_2.680698:1-1095 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 74, Coverage: 9, minDepth: 5 [pilon] Confirmed 814 of 1095 bases (74.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1963_length_1095_cov_2.680698:1-1095 [pilon] Processing NODE_1056_length_1462_cov_25.595824:1-1462 [pilon] NODE_5846_length_552_cov_2.902552:1-552 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 357 of 552 bases (64.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5846_length_552_cov_2.902552:1-552 [pilon] Processing NODE_6821_length_482_cov_1.479224:1-482 [pilon] NODE_14296_length_243_cov_11.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14296_length_243_cov_11.860656:1-243 [pilon] Processing NODE_1744_length_1163_cov_13.162188:1-1163 [pilon] NODE_2141_length_1049_cov_0.915948:1-1049 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 36, Coverage: 4, minDepth: 5 [pilon] Confirmed 516 of 1049 bases (49.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2141_length_1049_cov_0.915948:1-1049 [pilon] Processing NODE_1686_length_1187_cov_6.130394:1-1187 [pilon] NODE_9150_length_360_cov_9.682008:1-360 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 49, Coverage: 4, minDepth: 5 [pilon] Confirmed 148 of 360 bases (41.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9150_length_360_cov_9.682008:1-360 [pilon] Processing NODE_1304_length_1340_cov_2.058244:1-1340 [pilon] NODE_3056_length_861_cov_31.220270:1-861 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 551, Coverage: 44, minDepth: 11 [pilon] Confirmed 605 of 861 bases (70.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3056_length_861_cov_31.220270:1-861 [pilon] Processing NODE_1426_length_1291_cov_2.129915:1-1291 [pilon] NODE_6133_length_529_cov_22.453431:1-529 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 224, Coverage: 20, minDepth: 5 [pilon] Confirmed 321 of 529 bases (60.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6133_length_529_cov_22.453431:1-529 [pilon] Processing NODE_7853_length_425_cov_2.368421:1-425 [pilon] NODE_7709_length_432_cov_14.739550:1-432 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 97, Coverage: 17, minDepth: 5 [pilon] Confirmed 378 of 432 bases (87.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7709_length_432_cov_14.739550:1-432 [pilon] Processing NODE_7940_length_420_cov_31.618729:1-420 [pilon] NODE_4973_length_620_cov_23.006012:1-620 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 289, Coverage: 35, minDepth: 9 [pilon] Confirmed 553 of 620 bases (89.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4973_length_620_cov_23.006012:1-620 [pilon] Processing NODE_13813_length_243_cov_15.549180:1-243 [pilon] NODE_10409_length_308_cov_25.347594:1-308 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 88, Coverage: 5, minDepth: 5 [pilon] Confirmed 187 of 308 bases (60.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10409_length_308_cov_25.347594:1-308 [pilon] Processing NODE_9426_length_349_cov_1.885965:1-349 [pilon] NODE_601_length_1810_cov_2.047957:1-1810 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 109, Coverage: 8, minDepth: 5 [pilon] Confirmed 1441 of 1810 bases (79.61%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_601_length_1810_cov_2.047957:1-1810 [pilon] Processing NODE_3208_length_832_cov_1.613221:1-832 [pilon] NODE_14474_length_243_cov_10.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14474_length_243_cov_10.467213:1-243 [pilon] Processing NODE_11789_length_253_cov_16.674242:1-253 [pilon] NODE_6818_length_482_cov_1.698061:1-482 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 24, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 482 bases (26.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6818_length_482_cov_1.698061:1-482 [pilon] Processing NODE_15120_length_211_cov_61.155556:1-211 [pilon] NODE_8238_length_407_cov_3.856643:1-407 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 31, Coverage: 10, minDepth: 5 [pilon] Confirmed 264 of 407 bases (64.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8238_length_407_cov_3.856643:1-407 [pilon] Processing NODE_4181_length_696_cov_11.966957:1-696 [pilon] NODE_10639_length_300_cov_14.525140:1-300 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 213 of 300 bases (71.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10639_length_300_cov_14.525140:1-300 [pilon] Processing NODE_8116_length_412_cov_23.718213:1-412 [pilon] NODE_12276_length_243_cov_33.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12276_length_243_cov_33.754098:1-243 [pilon] Processing NODE_10820_length_291_cov_31.923529:1-291 [pilon] NODE_4758_length_639_cov_2.119691:1-639 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 344 of 639 bases (53.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4758_length_639_cov_2.119691:1-639 [pilon] Processing NODE_514_length_1903_cov_16.508418:1-1903 [pilon] NODE_14692_length_243_cov_8.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14692_length_243_cov_8.647541:1-243 [pilon] Processing NODE_11104_length_279_cov_23.335443:1-279 [pilon] NODE_7600_length_438_cov_2.419558:1-438 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 21, Coverage: 6, minDepth: 5 [pilon] Confirmed 273 of 438 bases (62.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7600_length_438_cov_2.419558:1-438 [pilon] Processing NODE_959_length_1520_cov_2.720515:1-1520 [pilon] NODE_9958_length_327_cov_22.441748:1-327 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 111, Coverage: 20, minDepth: 5 [pilon] Confirmed 283 of 327 bases (86.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9958_length_327_cov_22.441748:1-327 [pilon] Processing NODE_14310_length_243_cov_11.786885:1-243 [pilon] NODE_1416_length_1292_cov_24.770282:1-1292 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 672, Coverage: 51, minDepth: 13 [pilon] Confirmed 1257 of 1292 bases (97.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1416_length_1292_cov_24.770282:1-1292 [pilon] Processing NODE_9410_length_350_cov_11.895197:1-350 [pilon] NODE_12865_length_243_cov_24.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12865_length_243_cov_24.352459:1-243 [pilon] Processing NODE_6889_length_478_cov_2.812325:1-478 [pilon] NODE_9521_length_345_cov_15.535714:1-345 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 96, Coverage: 17, minDepth: 5 [pilon] Confirmed 293 of 345 bases (84.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9521_length_345_cov_15.535714:1-345 [pilon] Processing NODE_14867_length_243_cov_7.008197:1-243 [pilon] NODE_2605_length_945_cov_2.205097:1-945 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 49, Coverage: 7, minDepth: 5 [pilon] Confirmed 469 of 945 bases (49.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2605_length_945_cov_2.205097:1-945 [pilon] Processing NODE_12755_length_243_cov_25.491803:1-243 [pilon] NODE_3847_length_734_cov_32.820555:1-734 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 534, Coverage: 42, minDepth: 11 [pilon] Confirmed 639 of 734 bases (87.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3847_length_734_cov_32.820555:1-734 [pilon] Processing NODE_1162_length_1412_cov_21.786987:1-1412 [pilon] NODE_13531_length_243_cov_18.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13531_length_243_cov_18.065574:1-243 [pilon] Processing NODE_6614_length_496_cov_31.042667:1-496 [pilon] NODE_5946_length_545_cov_1.323113:1-545 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 168 of 545 bases (30.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5946_length_545_cov_1.323113:1-545 [pilon] Processing NODE_10097_length_321_cov_19.770000:1-321 [pilon] NODE_3033_length_867_cov_22.572386:1-867 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 466, Coverage: 46, minDepth: 12 [pilon] Confirmed 529 of 867 bases (61.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3033_length_867_cov_22.572386:1-867 [pilon] Processing NODE_3821_length_738_cov_18.742301:1-738 [pilon] NODE_9470_length_347_cov_24.030973:1-347 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 131, Coverage: 12, minDepth: 5 [pilon] Confirmed 230 of 347 bases (66.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9470_length_347_cov_24.030973:1-347 [pilon] Processing NODE_7647_length_435_cov_26.378981:1-435 [pilon] NODE_7853_length_425_cov_2.368421:1-425 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 160 of 425 bases (37.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7853_length_425_cov_2.368421:1-425 [pilon] Processing NODE_1962_length_1095_cov_23.010267:1-1095 [pilon] NODE_1056_length_1462_cov_25.595824:1-1462 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 875, Coverage: 46, minDepth: 12 [pilon] Confirmed 1206 of 1462 bases (82.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1056_length_1462_cov_25.595824:1-1462 [pilon] Processing NODE_3002_length_873_cov_7.355053:1-873 [pilon] NODE_1744_length_1163_cov_13.162188:1-1163 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 358, Coverage: 27, minDepth: 7 [pilon] Confirmed 900 of 1163 bases (77.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1744_length_1163_cov_13.162188:1-1163 [pilon] Processing NODE_485_length_1924_cov_3.612313:1-1924 [pilon] NODE_6821_length_482_cov_1.479224:1-482 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 338 of 482 bases (70.12%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6821_length_482_cov_1.479224:1-482 [pilon] Processing NODE_6492_length_504_cov_11.454308:1-504 [pilon] NODE_13813_length_243_cov_15.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13813_length_243_cov_15.549180:1-243 [pilon] Processing NODE_594_length_1819_cov_1.742049:1-1819 [pilon] NODE_1686_length_1187_cov_6.130394:1-1187 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 153, Coverage: 15, minDepth: 5 [pilon] Confirmed 1001 of 1187 bases (84.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1686_length_1187_cov_6.130394:1-1187 [pilon] Processing NODE_2533_length_960_cov_25.856973:1-960 [pilon] NODE_1304_length_1340_cov_2.058244:1-1340 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 77, Coverage: 7, minDepth: 5 [pilon] Confirmed 1027 of 1340 bases (76.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1304_length_1340_cov_2.058244:1-1340 [pilon] Processing NODE_7146_length_462_cov_49.199413:1-462 [pilon] NODE_1426_length_1291_cov_2.129915:1-1291 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 82, Coverage: 8, minDepth: 5 [pilon] Confirmed 1049 of 1291 bases (81.25%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1426_length_1291_cov_2.129915:1-1291 [pilon] Processing NODE_1255_length_1362_cov_10.897663:1-1362 [pilon] NODE_10820_length_291_cov_31.923529:1-291 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 121, Coverage: 9, minDepth: 5 [pilon] Confirmed 222 of 291 bases (76.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10820_length_291_cov_31.923529:1-291 [pilon] Processing NODE_13252_length_243_cov_20.631148:1-243 [pilon] NODE_7940_length_420_cov_31.618729:1-420 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 211, Coverage: 28, minDepth: 7 [pilon] Confirmed 275 of 420 bases (65.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7940_length_420_cov_31.618729:1-420 [pilon] Processing NODE_1881_length_1118_cov_39.083250:1-1118 [pilon] NODE_9426_length_349_cov_1.885965:1-349 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 21, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 349 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9426_length_349_cov_1.885965:1-349 [pilon] Processing NODE_4821_length_633_cov_1.744141:1-633 [pilon] NODE_15120_length_211_cov_61.155556:1-211 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 117, Coverage: 7, minDepth: 5 [pilon] Confirmed 147 of 211 bases (69.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15120_length_211_cov_61.155556:1-211 [pilon] Processing NODE_4563_length_656_cov_28.357009:1-656 [pilon] NODE_8116_length_412_cov_23.718213:1-412 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 160, Coverage: 16, minDepth: 5 [pilon] Confirmed 314 of 412 bases (76.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8116_length_412_cov_23.718213:1-412 [pilon] Processing NODE_1017_length_1487_cov_17.221083:1-1487 [pilon] NODE_4181_length_696_cov_11.966957:1-696 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 173, Coverage: 17, minDepth: 5 [pilon] Confirmed 502 of 696 bases (72.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4181_length_696_cov_11.966957:1-696 [pilon] Processing NODE_13590_length_243_cov_17.581967:1-243 [pilon] NODE_3208_length_832_cov_1.613221:1-832 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 37, Coverage: 6, minDepth: 5 [pilon] Confirmed 554 of 832 bases (66.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3208_length_832_cov_1.613221:1-832 [pilon] Processing NODE_3348_length_806_cov_2.900730:1-806 [pilon] NODE_11789_length_253_cov_16.674242:1-253 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 55, Coverage: 4, minDepth: 5 [pilon] Confirmed 120 of 253 bases (47.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11789_length_253_cov_16.674242:1-253 [pilon] Processing NODE_13507_length_243_cov_18.319672:1-243 [pilon] NODE_14310_length_243_cov_11.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14310_length_243_cov_11.786885:1-243 [pilon] Processing NODE_9097_length_361_cov_44.254167:1-361 [pilon] NODE_9410_length_350_cov_11.895197:1-350 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 88, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 350 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9410_length_350_cov_11.895197:1-350 [pilon] Processing NODE_3360_length_803_cov_13.140762:1-803 [pilon] NODE_11104_length_279_cov_23.335443:1-279 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 84, Coverage: 9, minDepth: 5 [pilon] Confirmed 170 of 279 bases (60.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11104_length_279_cov_23.335443:1-279 [pilon] Processing NODE_3673_length_759_cov_2.449843:1-759 [pilon] NODE_6889_length_478_cov_2.812325:1-478 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 308 of 478 bases (64.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6889_length_478_cov_2.812325:1-478 [pilon] Processing NODE_14068_length_243_cov_13.688525:1-243 [pilon] NODE_1962_length_1095_cov_23.010267:1-1095 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 570, Coverage: 45, minDepth: 11 [pilon] Confirmed 909 of 1095 bases (83.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1962_length_1095_cov_23.010267:1-1095 [pilon] Processing NODE_14364_length_243_cov_11.327869:1-243 [pilon] NODE_514_length_1903_cov_16.508418:1-1903 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 714, Coverage: 43, minDepth: 11 [pilon] Confirmed 1560 of 1903 bases (81.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_514_length_1903_cov_16.508418:1-1903 [pilon] Processing NODE_13718_length_243_cov_16.254098:1-243 [pilon] NODE_959_length_1520_cov_2.720515:1-1520 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 102, Coverage: 9, minDepth: 5 [pilon] Confirmed 1038 of 1520 bases (68.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_959_length_1520_cov_2.720515:1-1520 [pilon] Processing NODE_13043_length_243_cov_22.491803:1-243 [pilon] NODE_14867_length_243_cov_7.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14867_length_243_cov_7.008197:1-243 [pilon] Processing NODE_12918_length_243_cov_23.877049:1-243 [pilon] NODE_12755_length_243_cov_25.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12755_length_243_cov_25.491803:1-243 [pilon] Processing NODE_457_length_1967_cov_3.331528:1-1967 [pilon] NODE_10097_length_321_cov_19.770000:1-321 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 81, Coverage: 12, minDepth: 5 [pilon] Confirmed 248 of 321 bases (77.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10097_length_321_cov_19.770000:1-321 [pilon] Processing NODE_8400_length_399_cov_26.827338:1-399 [pilon] NODE_6614_length_496_cov_31.042667:1-496 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 314, Coverage: 35, minDepth: 9 [pilon] Confirmed 230 of 496 bases (46.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6614_length_496_cov_31.042667:1-496 [pilon] Processing NODE_14437_length_243_cov_10.778689:1-243 [pilon] NODE_594_length_1819_cov_1.742049:1-1819 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 115, Coverage: 8, minDepth: 5 [pilon] Confirmed 1401 of 1819 bases (77.02%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_594_length_1819_cov_1.742049:1-1819 [pilon] Processing NODE_3768_length_745_cov_2.727564:1-745 [pilon] NODE_3821_length_738_cov_18.742301:1-738 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 273, Coverage: 37, minDepth: 9 [pilon] Confirmed 604 of 738 bases (81.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3821_length_738_cov_18.742301:1-738 [pilon] Processing NODE_3710_length_753_cov_17.090190:1-753 [pilon] NODE_1162_length_1412_cov_21.786987:1-1412 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 717, Coverage: 43, minDepth: 11 [pilon] Confirmed 1282 of 1412 bases (90.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1162_length_1412_cov_21.786987:1-1412 [pilon] Processing NODE_11897_length_249_cov_20.554688:1-249 [pilon] NODE_7647_length_435_cov_26.378981:1-435 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 176, Coverage: 17, minDepth: 5 [pilon] Confirmed 269 of 435 bases (61.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7647_length_435_cov_26.378981:1-435 [pilon] Processing NODE_14746_length_243_cov_8.131148:1-243 [pilon] NODE_13252_length_243_cov_20.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13252_length_243_cov_20.631148:1-243 [pilon] Processing NODE_6863_length_480_cov_11.693593:1-480 [pilon] NODE_6492_length_504_cov_11.454308:1-504 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 91, Coverage: 7, minDepth: 5 [pilon] Confirmed 295 of 504 bases (58.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6492_length_504_cov_11.454308:1-504 [pilon] Processing NODE_5598_length_570_cov_31.868597:1-570 [pilon] NODE_3002_length_873_cov_7.355053:1-873 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 132, Coverage: 8, minDepth: 5 [pilon] Confirmed 501 of 873 bases (57.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3002_length_873_cov_7.355053:1-873 [pilon] Processing NODE_4397_length_671_cov_23.798182:1-671 [pilon] NODE_485_length_1924_cov_3.612313:1-1924 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 180, Coverage: 12, minDepth: 5 [pilon] Confirmed 1624 of 1924 bases (84.41%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_485_length_1924_cov_3.612313:1-1924 [pilon] Processing NODE_13200_length_243_cov_21.090164:1-243 [pilon] NODE_2533_length_960_cov_25.856973:1-960 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 476, Coverage: 50, minDepth: 13 [pilon] Confirmed 804 of 960 bases (83.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2533_length_960_cov_25.856973:1-960 [pilon] Processing NODE_13558_length_243_cov_17.819672:1-243 [pilon] NODE_7146_length_462_cov_49.199413:1-462 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 369, Coverage: 68, minDepth: 17 [pilon] Confirmed 389 of 462 bases (84.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7146_length_462_cov_49.199413:1-462 [pilon] Processing NODE_2801_length_909_cov_2.497462:1-909 [pilon] NODE_1255_length_1362_cov_10.897663:1-1362 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 339, Coverage: 28, minDepth: 7 [pilon] Confirmed 1062 of 1362 bases (77.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1255_length_1362_cov_10.897663:1-1362 [pilon] Processing NODE_10244_length_315_cov_15.185567:1-315 [pilon] NODE_13718_length_243_cov_16.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13718_length_243_cov_16.254098:1-243 [pilon] Processing NODE_11427_length_267_cov_8.095890:1-267 [pilon] NODE_4821_length_633_cov_1.744141:1-633 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 217 of 633 bases (34.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4821_length_633_cov_1.744141:1-633 [pilon] Processing NODE_4878_length_629_cov_0.566929:1-629 [pilon] NODE_13590_length_243_cov_17.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13590_length_243_cov_17.581967:1-243 [pilon] Processing NODE_12448_length_243_cov_30.024590:1-243 [pilon] NODE_13507_length_243_cov_18.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13507_length_243_cov_18.319672:1-243 [pilon] Processing NODE_3586_length_771_cov_11.223077:1-771 [pilon] NODE_1017_length_1487_cov_17.221083:1-1487 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 618, Coverage: 29, minDepth: 7 [pilon] Confirmed 1152 of 1487 bases (77.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1017_length_1487_cov_17.221083:1-1487 [pilon] Processing NODE_3510_length_782_cov_0.623298:1-782 [pilon] NODE_3348_length_806_cov_2.900730:1-806 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 49, Coverage: 8, minDepth: 5 [pilon] Confirmed 494 of 806 bases (61.29%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3348_length_806_cov_2.900730:1-806 [pilon] Processing NODE_244_length_2358_cov_35.762181:1-2358 [pilon] NODE_9097_length_361_cov_44.254167:1-361 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 243, Coverage: 26, minDepth: 7 [pilon] Confirmed 316 of 361 bases (87.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9097_length_361_cov_44.254167:1-361 [pilon] Processing NODE_8879_length_373_cov_6.607143:1-373 [pilon] NODE_3768_length_745_cov_2.727564:1-745 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 41, Coverage: 7, minDepth: 5 [pilon] Confirmed 561 of 745 bases (75.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3768_length_745_cov_2.727564:1-745 [pilon] NODE_4563_length_656_cov_28.357009:1-656 log: [pilon] Processing NODE_422_length_2008_cov_14.489666:1-2008 [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 360, Coverage: 52, minDepth: 13 [pilon] Confirmed 535 of 656 bases (81.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4563_length_656_cov_28.357009:1-656 [pilon] Processing NODE_13968_length_243_cov_14.368852:1-243 [pilon] NODE_1881_length_1118_cov_39.083250:1-1118 log: [pilon] frags shovill.bam: coverage 88 [pilon] Total Reads: 890, Coverage: 88, minDepth: 22 [pilon] Confirmed 1063 of 1118 bases (95.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1881_length_1118_cov_39.083250:1-1118 [pilon] Processing NODE_13489_length_243_cov_18.426230:1-243 [pilon] NODE_6863_length_480_cov_11.693593:1-480 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 103, Coverage: 9, minDepth: 5 [pilon] Confirmed 380 of 480 bases (79.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6863_length_480_cov_11.693593:1-480 [pilon] Processing NODE_10618_length_300_cov_23.413408:1-300 [pilon] NODE_14068_length_243_cov_13.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14068_length_243_cov_13.688525:1-243 [pilon] Processing NODE_10071_length_322_cov_23.711443:1-322 [pilon] NODE_3360_length_803_cov_13.140762:1-803 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 238, Coverage: 23, minDepth: 6 [pilon] Confirmed 716 of 803 bases (89.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3360_length_803_cov_13.140762:1-803 [pilon] Processing NODE_14046_length_243_cov_13.852459:1-243 [pilon] NODE_3673_length_759_cov_2.449843:1-759 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 36, Coverage: 6, minDepth: 5 [pilon] Confirmed 471 of 759 bases (62.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3673_length_759_cov_2.449843:1-759 [pilon] Processing NODE_12343_length_243_cov_32.336066:1-243 [pilon] NODE_13043_length_243_cov_22.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13043_length_243_cov_22.491803:1-243 [pilon] Processing NODE_1870_length_1122_cov_1.932068:1-1122 [pilon] NODE_14364_length_243_cov_11.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14364_length_243_cov_11.327869:1-243 [pilon] Processing NODE_3550_length_777_cov_20.289634:1-777 [pilon] NODE_457_length_1967_cov_3.331528:1-1967 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 142, Coverage: 9, minDepth: 5 [pilon] Confirmed 1134 of 1967 bases (57.65%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_457_length_1967_cov_3.331528:1-1967 [pilon] Processing NODE_10989_length_285_cov_10.024390:1-285 [pilon] NODE_12918_length_243_cov_23.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12918_length_243_cov_23.877049:1-243 [pilon] Processing NODE_11297_length_273_cov_4.690789:1-273 [pilon] NODE_8400_length_399_cov_26.827338:1-399 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 171, Coverage: 18, minDepth: 5 [pilon] Confirmed 266 of 399 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8400_length_399_cov_26.827338:1-399 [pilon] Processing NODE_14265_length_243_cov_12.098361:1-243 [pilon] NODE_3710_length_753_cov_17.090190:1-753 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 242, Coverage: 35, minDepth: 9 [pilon] Confirmed 558 of 753 bases (74.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3710_length_753_cov_17.090190:1-753 [pilon] Processing NODE_13329_length_243_cov_20.008197:1-243 [pilon] NODE_14437_length_243_cov_10.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14437_length_243_cov_10.778689:1-243 [pilon] Processing NODE_11013_length_283_cov_32.154321:1-283 [pilon] NODE_11897_length_249_cov_20.554688:1-249 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 54, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 249 bases (52.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11897_length_249_cov_20.554688:1-249 [pilon] Processing NODE_1769_length_1156_cov_1.185507:1-1156 [pilon] NODE_14746_length_243_cov_8.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14746_length_243_cov_8.131148:1-243 [pilon] Processing NODE_10139_length_320_cov_28.884422:1-320 [pilon] NODE_5598_length_570_cov_31.868597:1-570 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 352, Coverage: 33, minDepth: 8 [pilon] Confirmed 345 of 570 bases (60.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5598_length_570_cov_31.868597:1-570 [pilon] Processing NODE_1907_length_1110_cov_47.367037:1-1110 [pilon] NODE_13200_length_243_cov_21.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13200_length_243_cov_21.090164:1-243 [pilon] Processing NODE_916_length_1547_cov_2.754558:1-1547 [pilon] NODE_13558_length_243_cov_17.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13558_length_243_cov_17.819672:1-243 [pilon] Processing NODE_3018_length_870_cov_13.301736:1-870 [pilon] NODE_4397_length_671_cov_23.798182:1-671 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 377, Coverage: 44, minDepth: 11 [pilon] Confirmed 622 of 671 bases (92.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4397_length_671_cov_23.798182:1-671 [pilon] Processing NODE_13767_length_243_cov_15.926230:1-243 [pilon] NODE_11427_length_267_cov_8.095890:1-267 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11427_length_267_cov_8.095890:1-267 [pilon] Processing NODE_9412_length_350_cov_8.986900:1-350 [pilon] NODE_2801_length_909_cov_2.497462:1-909 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 65, Coverage: 9, minDepth: 5 [pilon] Confirmed 669 of 909 bases (73.60%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2801_length_909_cov_2.497462:1-909 [pilon] Processing NODE_11654_length_258_cov_13.291971:1-258 [pilon] NODE_4878_length_629_cov_0.566929:1-629 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 114 of 629 bases (18.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4878_length_629_cov_0.566929:1-629 [pilon] Processing NODE_3310_length_813_cov_15.495665:1-813 [pilon] NODE_10618_length_300_cov_23.413408:1-300 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 82, Coverage: 10, minDepth: 5 [pilon] Confirmed 181 of 300 bases (60.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10618_length_300_cov_23.413408:1-300 [pilon] Processing NODE_3873_length_731_cov_21.719672:1-731 [pilon] NODE_422_length_2008_cov_14.489666:1-2008 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 716, Coverage: 45, minDepth: 11 [pilon] Confirmed 1527 of 2008 bases (76.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_422_length_2008_cov_14.489666:1-2008 [pilon] Processing NODE_5956_length_544_cov_15.718676:1-544 [pilon] NODE_10244_length_315_cov_15.185567:1-315 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 58, Coverage: 3, minDepth: 5 [pilon] Confirmed 110 of 315 bases (34.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10244_length_315_cov_15.185567:1-315 [pilon] Processing NODE_5109_length_609_cov_21.719262:1-609 [pilon] NODE_12448_length_243_cov_30.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12448_length_243_cov_30.024590:1-243 [pilon] Processing NODE_3397_length_798_cov_24.389956:1-798 [pilon] NODE_3510_length_782_cov_0.623298:1-782 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 15, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 782 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3510_length_782_cov_0.623298:1-782 [pilon] Processing NODE_14188_length_243_cov_12.713115:1-243 [pilon] NODE_3586_length_771_cov_11.223077:1-771 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 213, Coverage: 27, minDepth: 7 [pilon] Confirmed 668 of 771 bases (86.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3586_length_771_cov_11.223077:1-771 [pilon] Processing NODE_7633_length_436_cov_0.917460:1-436 [pilon] NODE_13968_length_243_cov_14.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13968_length_243_cov_14.368852:1-243 [pilon] Processing NODE_10863_length_290_cov_3.130178:1-290 [pilon] NODE_8879_length_373_cov_6.607143:1-373 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 373 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8879_length_373_cov_6.607143:1-373 [pilon] Processing NODE_13559_length_243_cov_17.803279:1-243 [pilon] NODE_13489_length_243_cov_18.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13489_length_243_cov_18.426230:1-243 [pilon] Processing NODE_9349_length_352_cov_10.151515:1-352 [pilon] NODE_10071_length_322_cov_23.711443:1-322 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 106, Coverage: 10, minDepth: 5 [pilon] Confirmed 210 of 322 bases (65.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10071_length_322_cov_23.711443:1-322 [pilon] Processing NODE_8635_length_386_cov_19.532075:1-386 [pilon] NODE_14046_length_243_cov_13.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14046_length_243_cov_13.852459:1-243 [pilon] Processing NODE_13029_length_243_cov_22.631148:1-243 [pilon] NODE_244_length_2358_cov_35.762181:1-2358 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 1838, Coverage: 91, minDepth: 23 [pilon] Confirmed 2020 of 2358 bases (85.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_244_length_2358_cov_35.762181:1-2358 [pilon] Processing NODE_4010_length_714_cov_62.694772:1-714 [pilon] NODE_10989_length_285_cov_10.024390:1-285 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 36, Coverage: 4, minDepth: 5 [pilon] Confirmed 83 of 285 bases (29.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10989_length_285_cov_10.024390:1-285 [pilon] Processing NODE_11525_length_263_cov_11.619718:1-263 [pilon] NODE_12343_length_243_cov_32.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12343_length_243_cov_32.336066:1-243 [pilon] Processing NODE_10124_length_321_cov_9.140000:1-321 [pilon] NODE_11297_length_273_cov_4.690789:1-273 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11297_length_273_cov_4.690789:1-273 [pilon] Processing NODE_4056_length_710_cov_13.429542:1-710 [pilon] NODE_3550_length_777_cov_20.289634:1-777 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 336, Coverage: 30, minDepth: 8 [pilon] Confirmed 459 of 777 bases (59.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3550_length_777_cov_20.289634:1-777 [pilon] Processing NODE_2050_length_1072_cov_2.737119:1-1072 [pilon] NODE_1870_length_1122_cov_1.932068:1-1122 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 59, Coverage: 7, minDepth: 5 [pilon] Confirmed 636 of 1122 bases (56.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1870_length_1122_cov_1.932068:1-1122 [pilon] Processing NODE_3955_length_720_cov_27.532554:1-720 [pilon] NODE_14265_length_243_cov_12.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14265_length_243_cov_12.098361:1-243 [pilon] Processing NODE_1897_length_1114_cov_13.763343:1-1114 [pilon] NODE_11013_length_283_cov_32.154321:1-283 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 100, Coverage: 16, minDepth: 5 [pilon] Confirmed 254 of 283 bases (89.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11013_length_283_cov_32.154321:1-283 [pilon] Processing NODE_14831_length_243_cov_7.401639:1-243 [pilon] NODE_13329_length_243_cov_20.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13329_length_243_cov_20.008197:1-243 [pilon] Processing NODE_14147_length_243_cov_13.139344:1-243 [pilon] NODE_3310_length_813_cov_15.495665:1-813 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 241, Coverage: 20, minDepth: 5 [pilon] Confirmed 623 of 813 bases (76.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3310_length_813_cov_15.495665:1-813 [pilon] Processing NODE_3956_length_720_cov_24.055092:1-720 [pilon] NODE_1769_length_1156_cov_1.185507:1-1156 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 42, Coverage: 4, minDepth: 5 [pilon] Confirmed 531 of 1156 bases (45.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1769_length_1156_cov_1.185507:1-1156 [pilon] Processing NODE_6411_length_510_cov_1.969152:1-510 [pilon] NODE_916_length_1547_cov_2.754558:1-1547 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 105, Coverage: 9, minDepth: 5 [pilon] Confirmed 1151 of 1547 bases (74.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_916_length_1547_cov_2.754558:1-1547 [pilon] Processing NODE_12555_length_243_cov_28.204918:1-243 [pilon] NODE_5956_length_544_cov_15.718676:1-544 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 190, Coverage: 11, minDepth: 5 [pilon] Confirmed 259 of 544 bases (47.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5956_length_544_cov_15.718676:1-544 [pilon] Processing NODE_854_length_1594_cov_15.853360:1-1594 [pilon] NODE_3873_length_731_cov_21.719672:1-731 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 338, Coverage: 38, minDepth: 10 [pilon] Confirmed 665 of 731 bases (90.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3873_length_731_cov_21.719672:1-731 [pilon] Processing NODE_10662_length_300_cov_5.240223:1-300 [pilon] NODE_10139_length_320_cov_28.884422:1-320 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 118, Coverage: 7, minDepth: 5 [pilon] Confirmed 167 of 320 bases (52.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10139_length_320_cov_28.884422:1-320 [pilon] Processing NODE_6094_length_532_cov_47.364964:1-532 [pilon] NODE_1907_length_1110_cov_47.367037:1-1110 log: [pilon] frags shovill.bam: coverage 117 [pilon] Total Reads: 1192, Coverage: 117, minDepth: 29 [pilon] Confirmed 1037 of 1110 bases (93.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1907_length_1110_cov_47.367037:1-1110 [pilon] Processing NODE_8543_length_391_cov_53.540741:1-391 [pilon] NODE_13767_length_243_cov_15.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13767_length_243_cov_15.926230:1-243 [pilon] NODE_9412_length_350_cov_8.986900:1-350 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 58, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 350 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_2281_length_1015_cov_14.873602:1-1015 [pilon] Finished processing NODE_9412_length_350_cov_8.986900:1-350 [pilon] Processing NODE_7267_length_456_cov_18.474627:1-456 [pilon] NODE_3018_length_870_cov_13.301736:1-870 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 228, Coverage: 17, minDepth: 5 [pilon] Confirmed 668 of 870 bases (76.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3018_length_870_cov_13.301736:1-870 [pilon] Processing NODE_11761_length_255_cov_13.664179:1-255 [pilon] NODE_11654_length_258_cov_13.291971:1-258 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11654_length_258_cov_13.291971:1-258 [pilon] Processing NODE_2070_length_1067_cov_26.363636:1-1067 [pilon] NODE_5109_length_609_cov_21.719262:1-609 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 269, Coverage: 28, minDepth: 7 [pilon] Confirmed 475 of 609 bases (78.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5109_length_609_cov_21.719262:1-609 [pilon] Processing NODE_13237_length_243_cov_20.754098:1-243 [pilon] NODE_3397_length_798_cov_24.389956:1-798 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 478, Coverage: 59, minDepth: 15 [pilon] Confirmed 548 of 798 bases (68.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3397_length_798_cov_24.389956:1-798 [pilon] Processing NODE_2785_length_911_cov_16.639241:1-911 [pilon] NODE_14188_length_243_cov_12.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14188_length_243_cov_12.713115:1-243 [pilon] Processing NODE_4422_length_669_cov_5.239051:1-669 [pilon] NODE_13559_length_243_cov_17.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13559_length_243_cov_17.803279:1-243 [pilon] Processing NODE_4118_length_703_cov_12.541237:1-703 [pilon] NODE_7633_length_436_cov_0.917460:1-436 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 436 bases (28.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7633_length_436_cov_0.917460:1-436 [pilon] Processing NODE_13072_length_243_cov_22.204918:1-243 [pilon] NODE_10863_length_290_cov_3.130178:1-290 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 290 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10863_length_290_cov_3.130178:1-290 [pilon] Processing NODE_13935_length_243_cov_14.647541:1-243 [pilon] NODE_8635_length_386_cov_19.532075:1-386 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 126, Coverage: 23, minDepth: 6 [pilon] Confirmed 322 of 386 bases (83.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8635_length_386_cov_19.532075:1-386 [pilon] Processing NODE_8098_length_414_cov_0.604096:1-414 [pilon] NODE_9349_length_352_cov_10.151515:1-352 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 52, Coverage: 8, minDepth: 5 [pilon] Confirmed 250 of 352 bases (71.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9349_length_352_cov_10.151515:1-352 [pilon] Processing NODE_1729_length_1170_cov_26.571020:1-1170 [pilon] NODE_3956_length_720_cov_24.055092:1-720 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 422, Coverage: 33, minDepth: 8 [pilon] Confirmed 463 of 720 bases (64.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3956_length_720_cov_24.055092:1-720 [pilon] Processing NODE_1612_length_1212_cov_20.645280:1-1212 [pilon] NODE_13029_length_243_cov_22.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13029_length_243_cov_22.631148:1-243 [pilon] Processing NODE_10746_length_296_cov_9.285714:1-296 [pilon] NODE_10662_length_300_cov_5.240223:1-300 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10662_length_300_cov_5.240223:1-300 [pilon] Processing NODE_3341_length_807_cov_2.486880:1-807 [pilon] NODE_4010_length_714_cov_62.694772:1-714 log: [pilon] frags shovill.bam: coverage 121 [pilon] Total Reads: 855, Coverage: 121, minDepth: 30 [pilon] Confirmed 636 of 714 bases (89.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4010_length_714_cov_62.694772:1-714 [pilon] Processing NODE_12727_length_243_cov_25.893443:1-243 [pilon] NODE_11525_length_263_cov_11.619718:1-263 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 37, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 263 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11525_length_263_cov_11.619718:1-263 [pilon] Processing NODE_13276_length_243_cov_20.385246:1-243 [pilon] NODE_854_length_1594_cov_15.853360:1-1594 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 595, Coverage: 42, minDepth: 11 [pilon] Confirmed 1339 of 1594 bases (84.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_854_length_1594_cov_15.853360:1-1594 [pilon] Processing NODE_6686_length_491_cov_18.843243:1-491 [pilon] NODE_10124_length_321_cov_9.140000:1-321 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 138 of 321 bases (42.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10124_length_321_cov_9.140000:1-321 [pilon] Processing NODE_5549_length_574_cov_1.600442:1-574 [pilon] NODE_4056_length_710_cov_13.429542:1-710 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 191, Coverage: 29, minDepth: 7 [pilon] Confirmed 606 of 710 bases (85.35%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4056_length_710_cov_13.429542:1-710 [pilon] Processing NODE_11774_length_254_cov_22.097744:1-254 [pilon] NODE_2050_length_1072_cov_2.737119:1-1072 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 73, Coverage: 9, minDepth: 5 [pilon] Confirmed 628 of 1072 bases (58.58%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2050_length_1072_cov_2.737119:1-1072 [pilon] Processing NODE_3609_length_767_cov_11.058824:1-767 [pilon] NODE_3955_length_720_cov_27.532554:1-720 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 423, Coverage: 37, minDepth: 9 [pilon] Confirmed 490 of 720 bases (68.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3955_length_720_cov_27.532554:1-720 [pilon] Processing NODE_3977_length_717_cov_3.203020:1-717 [pilon] NODE_12555_length_243_cov_28.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12555_length_243_cov_28.204918:1-243 [pilon] NODE_14147_length_243_cov_13.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14147_length_243_cov_13.139344:1-243 [pilon] Processing NODE_1229_length_1374_cov_10.553073:1-1374 [pilon] Processing NODE_10757_length_295_cov_10.706897:1-295 [pilon] NODE_1897_length_1114_cov_13.763343:1-1114 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 321, Coverage: 24, minDepth: 6 [pilon] Confirmed 1002 of 1114 bases (89.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1897_length_1114_cov_13.763343:1-1114 [pilon] Processing NODE_3152_length_842_cov_4.226075:1-842 [pilon] NODE_14831_length_243_cov_7.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14831_length_243_cov_7.401639:1-243 [pilon] Processing NODE_14949_length_243_cov_6.139344:1-243 [pilon] NODE_6411_length_510_cov_1.969152:1-510 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 26, Coverage: 7, minDepth: 5 [pilon] Confirmed 295 of 510 bases (57.84%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6411_length_510_cov_1.969152:1-510 [pilon] Processing NODE_8630_length_387_cov_11.473684:1-387 [pilon] NODE_2281_length_1015_cov_14.873602:1-1015 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 422, Coverage: 44, minDepth: 11 [pilon] Confirmed 835 of 1015 bases (82.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2281_length_1015_cov_14.873602:1-1015 [pilon] Processing NODE_3804_length_740_cov_8.137318:1-740 [pilon] NODE_6094_length_532_cov_47.364964:1-532 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 488, Coverage: 54, minDepth: 14 [pilon] Confirmed 271 of 532 bases (50.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6094_length_532_cov_47.364964:1-532 [pilon] Processing NODE_249_length_2345_cov_26.506745:1-2345 [pilon] NODE_8543_length_391_cov_53.540741:1-391 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 328, Coverage: 59, minDepth: 15 [pilon] Confirmed 323 of 391 bases (82.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8543_length_391_cov_53.540741:1-391 [pilon] Processing NODE_2040_length_1075_cov_22.715933:1-1075 [pilon] NODE_11761_length_255_cov_13.664179:1-255 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 39, Coverage: 3, minDepth: 5 [pilon] Confirmed 47 of 255 bases (18.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11761_length_255_cov_13.664179:1-255 [pilon] Processing NODE_7077_length_466_cov_26.649275:1-466 [pilon] NODE_7267_length_456_cov_18.474627:1-456 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 140, Coverage: 15, minDepth: 5 [pilon] Confirmed 345 of 456 bases (75.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7267_length_456_cov_18.474627:1-456 [pilon] Processing NODE_13425_length_243_cov_19.065574:1-243 [pilon] NODE_2070_length_1067_cov_26.363636:1-1067 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 574, Coverage: 55, minDepth: 14 [pilon] Confirmed 980 of 1067 bases (91.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2070_length_1067_cov_26.363636:1-1067 [pilon] Processing NODE_8768_length_378_cov_32.665370:1-378 [pilon] NODE_2785_length_911_cov_16.639241:1-911 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 316, Coverage: 32, minDepth: 8 [pilon] Confirmed 740 of 911 bases (81.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2785_length_911_cov_16.639241:1-911 [pilon] Processing NODE_2482_length_970_cov_29.190813:1-970 [pilon] NODE_13237_length_243_cov_20.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13237_length_243_cov_20.754098:1-243 [pilon] Processing NODE_12045_length_246_cov_6.784000:1-246 [pilon] NODE_13935_length_243_cov_14.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13935_length_243_cov_14.647541:1-243 [pilon] Processing NODE_7819_length_426_cov_18.186885:1-426 [pilon] NODE_13072_length_243_cov_22.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13072_length_243_cov_22.204918:1-243 [pilon] Processing NODE_12663_length_243_cov_26.680328:1-243 [pilon] NODE_1612_length_1212_cov_20.645280:1-1212 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 503, Coverage: 47, minDepth: 12 [pilon] Confirmed 872 of 1212 bases (71.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1612_length_1212_cov_20.645280:1-1212 [pilon] Processing NODE_963_length_1517_cov_18.126074:1-1517 [pilon] NODE_4422_length_669_cov_5.239051:1-669 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 91, Coverage: 6, minDepth: 5 [pilon] Confirmed 487 of 669 bases (72.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4422_length_669_cov_5.239051:1-669 [pilon] Processing NODE_10714_length_297_cov_15.857955:1-297 [pilon] NODE_4118_length_703_cov_12.541237:1-703 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 174, Coverage: 32, minDepth: 8 [pilon] Confirmed 521 of 703 bases (74.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4118_length_703_cov_12.541237:1-703 [pilon] Processing NODE_284_length_2272_cov_1.907020:1-2272 [pilon] NODE_8098_length_414_cov_0.604096:1-414 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 5, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 414 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8098_length_414_cov_0.604096:1-414 [pilon] Processing NODE_403_length_2044_cov_12.096204:1-2044 [pilon] NODE_13276_length_243_cov_20.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13276_length_243_cov_20.385246:1-243 [pilon] Processing NODE_1448_length_1281_cov_3.132759:1-1281 [pilon] NODE_1729_length_1170_cov_26.571020:1-1170 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 700, Coverage: 63, minDepth: 16 [pilon] Confirmed 895 of 1170 bases (76.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1729_length_1170_cov_26.571020:1-1170 [pilon] Processing NODE_540_length_1867_cov_3.034364:1-1867 [pilon] NODE_5549_length_574_cov_1.600442:1-574 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 33, Coverage: 6, minDepth: 5 [pilon] Confirmed 407 of 574 bases (70.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5549_length_574_cov_1.600442:1-574 [pilon] Processing NODE_1936_length_1102_cov_1.154944:1-1102 [pilon] NODE_10746_length_296_cov_9.285714:1-296 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 31, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 296 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10746_length_296_cov_9.285714:1-296 [pilon] Processing NODE_7635_length_436_cov_0.631746:1-436 [pilon] NODE_11774_length_254_cov_22.097744:1-254 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 69, Coverage: 4, minDepth: 5 [pilon] Confirmed 104 of 254 bases (40.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11774_length_254_cov_22.097744:1-254 [pilon] Processing NODE_4606_length_652_cov_11.853107:1-652 [pilon] NODE_6686_length_491_cov_18.843243:1-491 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 165, Coverage: 21, minDepth: 5 [pilon] Confirmed 414 of 491 bases (84.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6686_length_491_cov_18.843243:1-491 [pilon] Processing NODE_11775_length_254_cov_19.684211:1-254 [pilon] NODE_3977_length_717_cov_3.203020:1-717 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 48, Coverage: 9, minDepth: 5 [pilon] Confirmed 529 of 717 bases (73.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3977_length_717_cov_3.203020:1-717 [pilon] NODE_12727_length_243_cov_25.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12727_length_243_cov_25.893443:1-243 [pilon] Processing NODE_7573_length_439_cov_28.877358:1-439 [pilon] NODE_3609_length_767_cov_11.058824:1-767 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 182, Coverage: 19, minDepth: 5 [pilon] Confirmed 643 of 767 bases (83.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3609_length_767_cov_11.058824:1-767 [pilon] Processing NODE_11828_length_252_cov_14.496183:1-252 [pilon] NODE_3341_length_807_cov_2.486880:1-807 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 48, Coverage: 7, minDepth: 5 [pilon] Confirmed 513 of 807 bases (63.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3341_length_807_cov_2.486880:1-807 [pilon] Processing NODE_776_length_1640_cov_22.020408:1-1640 [pilon] NODE_14949_length_243_cov_6.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14949_length_243_cov_6.139344:1-243 [pilon] Processing NODE_10634_length_300_cov_15.804469:1-300 [pilon] NODE_3152_length_842_cov_4.226075:1-842 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 106, Coverage: 11, minDepth: 5 [pilon] Confirmed 580 of 842 bases (68.88%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3152_length_842_cov_4.226075:1-842 [pilon] Processing NODE_2412_length_988_cov_7.959631:1-988 [pilon] NODE_1229_length_1374_cov_10.553073:1-1374 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 352, Coverage: 22, minDepth: 6 [pilon] Confirmed 1267 of 1374 bases (92.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1229_length_1374_cov_10.553073:1-1374 [pilon] Processing NODE_5027_length_617_cov_2.586694:1-617 [pilon] NODE_7077_length_466_cov_26.649275:1-466 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 177, Coverage: 27, minDepth: 7 [pilon] Confirmed 348 of 466 bases (74.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7077_length_466_cov_26.649275:1-466 [pilon] Processing NODE_11332_length_270_cov_20.134228:1-270 [pilon] NODE_10757_length_295_cov_10.706897:1-295 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 36, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 295 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10757_length_295_cov_10.706897:1-295 [pilon] Processing NODE_55_length_3546_cov_11.927591:1-3546 [pilon] NODE_8630_length_387_cov_11.473684:1-387 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 73, Coverage: 5, minDepth: 5 [pilon] Confirmed 145 of 387 bases (37.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8630_length_387_cov_11.473684:1-387 [pilon] Processing NODE_13779_length_243_cov_15.827869:1-243 [pilon] NODE_3804_length_740_cov_8.137318:1-740 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 142, Coverage: 22, minDepth: 6 [pilon] Confirmed 574 of 740 bases (77.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3804_length_740_cov_8.137318:1-740 [pilon] Processing NODE_13754_length_243_cov_16.008197:1-243 [pilon] NODE_13425_length_243_cov_19.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13425_length_243_cov_19.065574:1-243 [pilon] Processing NODE_6295_length_518_cov_25.574307:1-518 [pilon] NODE_2040_length_1075_cov_22.715933:1-1075 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 519, Coverage: 34, minDepth: 9 [pilon] Confirmed 898 of 1075 bases (83.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2040_length_1075_cov_22.715933:1-1075 [pilon] Processing NODE_561_length_1846_cov_18.302609:1-1846 [pilon] NODE_249_length_2345_cov_26.506745:1-2345 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 1418, Coverage: 52, minDepth: 13 [pilon] Confirmed 2249 of 2345 bases (95.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_249_length_2345_cov_26.506745:1-2345 [pilon] Processing NODE_12117_length_243_cov_44.540984:1-243 [pilon] Processing NODE_8269_length_405_cov_27.021127:1-405 [pilon] NODE_8768_length_378_cov_32.665370:1-378 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 180, Coverage: 30, minDepth: 8 [pilon] Confirmed 293 of 378 bases (77.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8768_length_378_cov_32.665370:1-378 [pilon] Processing NODE_1833_length_1134_cov_1.973346:1-1134 [pilon] NODE_12663_length_243_cov_26.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12663_length_243_cov_26.680328:1-243 [pilon] Processing NODE_13367_length_243_cov_19.672131:1-243 [pilon] NODE_2482_length_970_cov_29.190813:1-970 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 650, Coverage: 50, minDepth: 13 [pilon] Confirmed 731 of 970 bases (75.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2482_length_970_cov_29.190813:1-970 [pilon] Processing NODE_14502_length_243_cov_10.278689:1-243 [pilon] NODE_12045_length_246_cov_6.784000:1-246 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 20, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12045_length_246_cov_6.784000:1-246 [pilon] Processing NODE_11928_length_249_cov_7.781250:1-249 [pilon] NODE_10714_length_297_cov_15.857955:1-297 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 51, Coverage: 3, minDepth: 5 [pilon] Confirmed 101 of 297 bases (34.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10714_length_297_cov_15.857955:1-297 [pilon] Processing NODE_12447_length_243_cov_30.049180:1-243 [pilon] NODE_7819_length_426_cov_18.186885:1-426 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 131, Coverage: 11, minDepth: 5 [pilon] Confirmed 277 of 426 bases (65.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7819_length_426_cov_18.186885:1-426 [pilon] Processing NODE_13631_length_243_cov_17.196721:1-243 [pilon] NODE_284_length_2272_cov_1.907020:1-2272 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 125, Coverage: 7, minDepth: 5 [pilon] Confirmed 1334 of 2272 bases (58.71%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_284_length_2272_cov_1.907020:1-2272 [pilon] Processing NODE_4091_length_706_cov_7.314530:1-706 [pilon] NODE_1448_length_1281_cov_3.132759:1-1281 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 105, Coverage: 11, minDepth: 5 [pilon] Confirmed 955 of 1281 bases (74.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1448_length_1281_cov_3.132759:1-1281 [pilon] Processing NODE_3184_length_835_cov_0.913165:1-835 [pilon] NODE_963_length_1517_cov_18.126074:1-1517 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 638, Coverage: 43, minDepth: 11 [pilon] Confirmed 1464 of 1517 bases (96.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_963_length_1517_cov_18.126074:1-1517 [pilon] Processing NODE_6549_length_500_cov_33.266491:1-500 [pilon] NODE_7635_length_436_cov_0.631746:1-436 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 8, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 436 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7635_length_436_cov_0.631746:1-436 [pilon] Processing NODE_6304_length_518_cov_0.765743:1-518 [pilon] NODE_1936_length_1102_cov_1.154944:1-1102 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 48, Coverage: 5, minDepth: 5 [pilon] Confirmed 669 of 1102 bases (60.71%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1936_length_1102_cov_1.154944:1-1102 [pilon] Processing NODE_13307_length_243_cov_20.196721:1-243 [pilon] NODE_11775_length_254_cov_19.684211:1-254 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 53, Coverage: 6, minDepth: 5 [pilon] Confirmed 198 of 254 bases (77.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11775_length_254_cov_19.684211:1-254 [pilon] NODE_540_length_1867_cov_3.034364:1-1867 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 156, Coverage: 11, minDepth: 5 [pilon] Confirmed 1576 of 1867 bases (84.41%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_540_length_1867_cov_3.034364:1-1867 [pilon] Processing NODE_2089_length_1062_cov_11.364506:1-1062 [pilon] Processing NODE_11461_length_264_cov_25.069930:1-264 [pilon] NODE_403_length_2044_cov_12.096204:1-2044 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 573, Coverage: 33, minDepth: 8 [pilon] Confirmed 1740 of 2044 bases (85.13%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_403_length_2044_cov_12.096204:1-2044 [pilon] Processing NODE_9605_length_342_cov_9.656109:1-342 [pilon] NODE_13779_length_243_cov_15.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13779_length_243_cov_15.827869:1-243 [pilon] Processing NODE_13192_length_243_cov_21.180328:1-243 [pilon] NODE_12117_length_243_cov_44.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 94, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12117_length_243_cov_44.540984:1-243 [pilon] Processing NODE_3000_length_873_cov_15.454787:1-873 [pilon] NODE_4606_length_652_cov_11.853107:1-652 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 172, Coverage: 10, minDepth: 5 [pilon] Confirmed 389 of 652 bases (59.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4606_length_652_cov_11.853107:1-652 [pilon] Processing NODE_9937_length_328_cov_15.908213:1-328 [pilon] NODE_11332_length_270_cov_20.134228:1-270 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 59, Coverage: 5, minDepth: 5 [pilon] Confirmed 134 of 270 bases (49.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11332_length_270_cov_20.134228:1-270 [pilon] Processing NODE_7906_length_423_cov_0.993377:1-423 [pilon] NODE_11828_length_252_cov_14.496183:1-252 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 252 bases (51.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11828_length_252_cov_14.496183:1-252 [pilon] Processing NODE_3311_length_813_cov_12.950867:1-813 [pilon] NODE_7573_length_439_cov_28.877358:1-439 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 151, Coverage: 14, minDepth: 5 [pilon] Confirmed 260 of 439 bases (59.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7573_length_439_cov_28.877358:1-439 [pilon] Processing NODE_7565_length_440_cov_5.043887:1-440 [pilon] NODE_6295_length_518_cov_25.574307:1-518 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 230, Coverage: 31, minDepth: 8 [pilon] Confirmed 381 of 518 bases (73.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6295_length_518_cov_25.574307:1-518 [pilon] Processing NODE_2732_length_922_cov_11.935081:1-922 [pilon] NODE_10634_length_300_cov_15.804469:1-300 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 65, Coverage: 6, minDepth: 5 [pilon] Confirmed 186 of 300 bases (62.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10634_length_300_cov_15.804469:1-300 [pilon] Processing NODE_6941_length_475_cov_1.180791:1-475 [pilon] NODE_2412_length_988_cov_7.959631:1-988 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 203, Coverage: 24, minDepth: 6 [pilon] Confirmed 880 of 988 bases (89.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2412_length_988_cov_7.959631:1-988 [pilon] Processing NODE_13185_length_243_cov_21.229508:1-243 [pilon] NODE_13754_length_243_cov_16.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13754_length_243_cov_16.008197:1-243 [pilon] Processing NODE_4256_length_687_cov_20.987633:1-687 [pilon] NODE_5027_length_617_cov_2.586694:1-617 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 35, Coverage: 6, minDepth: 5 [pilon] Confirmed 350 of 617 bases (56.73%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5027_length_617_cov_2.586694:1-617 [pilon] Processing NODE_2671_length_933_cov_24.399015:1-933 [pilon] NODE_13367_length_243_cov_19.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13367_length_243_cov_19.672131:1-243 [pilon] Processing NODE_2513_length_964_cov_23.989324:1-964 [pilon] NODE_776_length_1640_cov_22.020408:1-1640 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 755, Coverage: 52, minDepth: 13 [pilon] Confirmed 1256 of 1640 bases (76.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_776_length_1640_cov_22.020408:1-1640 [pilon] Processing NODE_3427_length_795_cov_4.287834:1-795 [pilon] NODE_561_length_1846_cov_18.302609:1-1846 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 827, Coverage: 49, minDepth: 12 [pilon] Confirmed 1576 of 1846 bases (85.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_561_length_1846_cov_18.302609:1-1846 [pilon] Processing NODE_14842_length_243_cov_7.303279:1-243 [pilon] NODE_8269_length_405_cov_27.021127:1-405 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 180, Coverage: 25, minDepth: 6 [pilon] Confirmed 302 of 405 bases (74.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8269_length_405_cov_27.021127:1-405 [pilon] Processing NODE_8836_length_375_cov_17.527559:1-375 [pilon] NODE_55_length_3546_cov_11.927591:1-3546 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 1173, Coverage: 39, minDepth: 10 [pilon] Confirmed 3081 of 3546 bases (86.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_55_length_3546_cov_11.927591:1-3546 [pilon] Processing NODE_981_length_1508_cov_13.724585:1-1508 [pilon] NODE_1833_length_1134_cov_1.973346:1-1134 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 70, Coverage: 8, minDepth: 5 [pilon] Confirmed 846 of 1134 bases (74.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1833_length_1134_cov_1.973346:1-1134 [pilon] Processing NODE_12135_length_243_cov_40.918033:1-243 [pilon] NODE_13631_length_243_cov_17.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13631_length_243_cov_17.196721:1-243 [pilon] Processing NODE_14533_length_243_cov_10.016393:1-243 [pilon] NODE_14502_length_243_cov_10.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14502_length_243_cov_10.278689:1-243 [pilon] Processing NODE_2102_length_1058_cov_29.386339:1-1058 [pilon] NODE_11928_length_249_cov_7.781250:1-249 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11928_length_249_cov_7.781250:1-249 [pilon] Processing NODE_35_length_4353_cov_33.435255:1-4353 [pilon] NODE_12447_length_243_cov_30.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12447_length_243_cov_30.049180:1-243 [pilon] Processing NODE_6063_length_534_cov_52.101695:1-534 [pilon] NODE_9937_length_328_cov_15.908213:1-328 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 68, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 328 bases (39.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9937_length_328_cov_15.908213:1-328 [pilon] Processing NODE_2743_length_919_cov_30.716792:1-919 [pilon] NODE_6549_length_500_cov_33.266491:1-500 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 280, Coverage: 32, minDepth: 8 [pilon] Confirmed 427 of 500 bases (85.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6549_length_500_cov_33.266491:1-500 [pilon] Processing NODE_2550_length_957_cov_1.851675:1-957 [pilon] NODE_3000_length_873_cov_15.454787:1-873 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 281, Coverage: 29, minDepth: 7 [pilon] Confirmed 818 of 873 bases (93.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3000_length_873_cov_15.454787:1-873 [pilon] Processing NODE_7913_length_422_cov_24.524917:1-422 [pilon] NODE_3184_length_835_cov_0.913165:1-835 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 31, Coverage: 4, minDepth: 5 [pilon] Confirmed 347 of 835 bases (41.56%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3184_length_835_cov_0.913165:1-835 [pilon] Processing NODE_179_length_2566_cov_18.208998:1-2566 [pilon] NODE_6304_length_518_cov_0.765743:1-518 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 228 of 518 bases (44.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6304_length_518_cov_0.765743:1-518 [pilon] Processing NODE_10171_length_318_cov_20.913706:1-318 [pilon] NODE_9605_length_342_cov_9.656109:1-342 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 56, Coverage: 8, minDepth: 5 [pilon] Confirmed 235 of 342 bases (68.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9605_length_342_cov_9.656109:1-342 [pilon] Processing NODE_14568_length_243_cov_9.770492:1-243 [pilon] NODE_4091_length_706_cov_7.314530:1-706 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 108, Coverage: 17, minDepth: 5 [pilon] Confirmed 560 of 706 bases (79.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4091_length_706_cov_7.314530:1-706 [pilon] Processing NODE_619_length_1783_cov_12.300241:1-1783 [pilon] NODE_13307_length_243_cov_20.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13307_length_243_cov_20.196721:1-243 [pilon] Processing NODE_7184_length_460_cov_44.442478:1-460 [pilon] NODE_11461_length_264_cov_25.069930:1-264 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 83, Coverage: 7, minDepth: 5 [pilon] Confirmed 221 of 264 bases (83.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11461_length_264_cov_25.069930:1-264 [pilon] Processing NODE_351_length_2124_cov_35.551672:1-2124 [pilon] NODE_13192_length_243_cov_21.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13192_length_243_cov_21.180328:1-243 [pilon] Processing NODE_8311_length_404_cov_3.696113:1-404 [pilon] NODE_2089_length_1062_cov_11.364506:1-1062 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 260, Coverage: 24, minDepth: 6 [pilon] Confirmed 991 of 1062 bases (93.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2089_length_1062_cov_11.364506:1-1062 [pilon] Processing NODE_10047_length_323_cov_56.054455:1-323 [pilon] NODE_2732_length_922_cov_11.935081:1-922 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 283, Coverage: 26, minDepth: 7 [pilon] Confirmed 816 of 922 bases (88.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2732_length_922_cov_11.935081:1-922 [pilon] Processing NODE_8106_length_413_cov_11.297945:1-413 [pilon] NODE_7906_length_423_cov_0.993377:1-423 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 3, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 423 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7906_length_423_cov_0.993377:1-423 [pilon] Processing NODE_2576_length_951_cov_3.409639:1-951 [pilon] NODE_7565_length_440_cov_5.043887:1-440 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 65, Coverage: 7, minDepth: 5 [pilon] Confirmed 311 of 440 bases (70.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7565_length_440_cov_5.043887:1-440 [pilon] Processing NODE_10491_length_305_cov_20.875000:1-305 [pilon] NODE_13185_length_243_cov_21.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13185_length_243_cov_21.229508:1-243 [pilon] Processing NODE_1058_length_1461_cov_29.570896:1-1461 [pilon] NODE_3311_length_813_cov_12.950867:1-813 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 205, Coverage: 25, minDepth: 6 [pilon] Confirmed 755 of 813 bases (92.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3311_length_813_cov_12.950867:1-813 [pilon] Processing NODE_645_length_1752_cov_20.051502:1-1752 [pilon] NODE_4256_length_687_cov_20.987633:1-687 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 248, Coverage: 27, minDepth: 7 [pilon] Confirmed 519 of 687 bases (75.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4256_length_687_cov_20.987633:1-687 [pilon] Processing NODE_13499_length_243_cov_18.360656:1-243 [pilon] NODE_6941_length_475_cov_1.180791:1-475 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 254 of 475 bases (53.47%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6941_length_475_cov_1.180791:1-475 [pilon] Processing NODE_13501_length_243_cov_18.352459:1-243 [pilon] NODE_12135_length_243_cov_40.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 98, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12135_length_243_cov_40.918033:1-243 [pilon] Processing NODE_4239_length_689_cov_2.829225:1-689 [pilon] NODE_2671_length_933_cov_24.399015:1-933 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 508, Coverage: 59, minDepth: 15 [pilon] Confirmed 699 of 933 bases (74.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2671_length_933_cov_24.399015:1-933 [pilon] Processing NODE_2440_length_980_cov_16.388824:1-980 [pilon] NODE_3427_length_795_cov_4.287834:1-795 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 100, Coverage: 16, minDepth: 5 [pilon] Confirmed 565 of 795 bases (71.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3427_length_795_cov_4.287834:1-795 [pilon] Processing NODE_3105_length_851_cov_1.926027:1-851 [pilon] NODE_14842_length_243_cov_7.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14842_length_243_cov_7.303279:1-243 [pilon] Processing NODE_574_length_1833_cov_3.242991:1-1833 [pilon] NODE_8836_length_375_cov_17.527559:1-375 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 88, Coverage: 16, minDepth: 5 [pilon] Confirmed 278 of 375 bases (74.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8836_length_375_cov_17.527559:1-375 [pilon] Processing NODE_7444_length_446_cov_16.772308:1-446 [pilon] NODE_2513_length_964_cov_23.989324:1-964 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 457, Coverage: 38, minDepth: 10 [pilon] Confirmed 770 of 964 bases (79.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2513_length_964_cov_23.989324:1-964 [pilon] Processing NODE_14542_length_243_cov_9.959016:1-243 [pilon] NODE_2102_length_1058_cov_29.386339:1-1058 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 627, Coverage: 65, minDepth: 16 [pilon] Confirmed 770 of 1058 bases (72.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2102_length_1058_cov_29.386339:1-1058 [pilon] Processing NODE_8298_length_405_cov_1.510563:1-405 [pilon] NODE_981_length_1508_cov_13.724585:1-1508 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 517, Coverage: 35, minDepth: 9 [pilon] Confirmed 1247 of 1508 bases (82.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_981_length_1508_cov_13.724585:1-1508 [pilon] Processing NODE_9769_length_336_cov_9.809302:1-336 [pilon] NODE_14533_length_243_cov_10.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14533_length_243_cov_10.016393:1-243 [pilon] Processing NODE_10958_length_285_cov_24.347561:1-285 [pilon] NODE_2743_length_919_cov_30.716792:1-919 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 570, Coverage: 57, minDepth: 14 [pilon] Confirmed 862 of 919 bases (93.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2743_length_919_cov_30.716792:1-919 [pilon] Processing NODE_8552_length_391_cov_16.900000:1-391 [pilon] NODE_14568_length_243_cov_9.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14568_length_243_cov_9.770492:1-243 [pilon] Processing NODE_11148_length_278_cov_7.777070:1-278 [pilon] NODE_2550_length_957_cov_1.851675:1-957 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 647 of 957 bases (67.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2550_length_957_cov_1.851675:1-957 [pilon] Processing NODE_3876_length_731_cov_4.285246:1-731 [pilon] NODE_7913_length_422_cov_24.524917:1-422 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 180, Coverage: 31, minDepth: 8 [pilon] Confirmed 351 of 422 bases (83.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7913_length_422_cov_24.524917:1-422 [pilon] Processing NODE_1838_length_1133_cov_0.596838:1-1133 [pilon] NODE_6063_length_534_cov_52.101695:1-534 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 494, Coverage: 80, minDepth: 20 [pilon] Confirmed 460 of 534 bases (86.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6063_length_534_cov_52.101695:1-534 [pilon] Processing NODE_8550_length_391_cov_21.100000:1-391 [pilon] NODE_619_length_1783_cov_12.300241:1-1783 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 503, Coverage: 29, minDepth: 7 [pilon] Confirmed 1657 of 1783 bases (92.93%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_619_length_1783_cov_12.300241:1-1783 [pilon] Processing NODE_10523_length_303_cov_29.428571:1-303 [pilon] NODE_7184_length_460_cov_44.442478:1-460 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 353, Coverage: 53, minDepth: 13 [pilon] Confirmed 403 of 460 bases (87.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7184_length_460_cov_44.442478:1-460 [pilon] Processing NODE_4427_length_668_cov_41.740402:1-668 [pilon] NODE_8106_length_413_cov_11.297945:1-413 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 75, Coverage: 6, minDepth: 5 [pilon] Confirmed 234 of 413 bases (56.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8106_length_413_cov_11.297945:1-413 [pilon] Processing NODE_11888_length_249_cov_24.609375:1-249 [pilon] NODE_179_length_2566_cov_18.208998:1-2566 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 1057, Coverage: 51, minDepth: 13 [pilon] Confirmed 2060 of 2566 bases (80.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_179_length_2566_cov_18.208998:1-2566 [pilon] Processing NODE_5863_length_551_cov_0.662791:1-551 [pilon] NODE_10171_length_318_cov_20.913706:1-318 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 88, Coverage: 10, minDepth: 5 [pilon] Confirmed 203 of 318 bases (63.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10171_length_318_cov_20.913706:1-318 [pilon] Processing NODE_7556_length_440_cov_48.241379:1-440 [pilon] NODE_8311_length_404_cov_3.696113:1-404 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 36, Coverage: 7, minDepth: 5 [pilon] Confirmed 301 of 404 bases (74.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8311_length_404_cov_3.696113:1-404 [pilon] Processing NODE_13270_length_243_cov_20.409836:1-243 [pilon] NODE_4239_length_689_cov_2.829225:1-689 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 55, Coverage: 9, minDepth: 5 [pilon] Confirmed 506 of 689 bases (73.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4239_length_689_cov_2.829225:1-689 [pilon] NODE_1058_length_1461_cov_29.570896:1-1461 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 1008, Coverage: 48, minDepth: 12 [pilon] Confirmed 1318 of 1461 bases (90.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1058_length_1461_cov_29.570896:1-1461 [pilon] Processing NODE_12011_length_246_cov_15.136000:1-246 [pilon] Processing NODE_5220_length_600_cov_1.632568:1-600 [pilon] NODE_2576_length_951_cov_3.409639:1-951 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 88, Coverage: 10, minDepth: 5 [pilon] Confirmed 700 of 951 bases (73.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2576_length_951_cov_3.409639:1-951 [pilon] Processing NODE_12180_length_243_cov_37.532787:1-243 [pilon] NODE_10491_length_305_cov_20.875000:1-305 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 85, Coverage: 6, minDepth: 5 [pilon] Confirmed 170 of 305 bases (55.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10491_length_305_cov_20.875000:1-305 [pilon] Processing NODE_13693_length_243_cov_16.459016:1-243 [pilon] NODE_645_length_1752_cov_20.051502:1-1752 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 773, Coverage: 57, minDepth: 14 [pilon] Confirmed 1485 of 1752 bases (84.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_645_length_1752_cov_20.051502:1-1752 [pilon] Processing NODE_4238_length_689_cov_3.258803:1-689 [pilon] NODE_10047_length_323_cov_56.054455:1-323 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 284, Coverage: 37, minDepth: 9 [pilon] Confirmed 283 of 323 bases (87.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10047_length_323_cov_56.054455:1-323 [pilon] Processing NODE_9833_length_333_cov_13.919811:1-333 [pilon] NODE_351_length_2124_cov_35.551672:1-2124 log: [pilon] frags shovill.bam: coverage 94 [pilon] Total Reads: 1616, Coverage: 94, minDepth: 24 [pilon] Confirmed 1458 of 2124 bases (68.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_351_length_2124_cov_35.551672:1-2124 [pilon] Processing NODE_7966_length_420_cov_1.381271:1-420 [pilon] NODE_35_length_4353_cov_33.435255:1-4353 log: [pilon] frags shovill.bam: coverage 96 [pilon] Total Reads: 3301, Coverage: 96, minDepth: 24 [pilon] Confirmed 3719 of 4353 bases (85.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_35_length_4353_cov_33.435255:1-4353 [pilon] Processing NODE_14617_length_243_cov_9.278689:1-243 [pilon] NODE_13499_length_243_cov_18.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13499_length_243_cov_18.360656:1-243 [pilon] Processing NODE_2132_length_1051_cov_20.546237:1-1051 [pilon] NODE_13501_length_243_cov_18.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13501_length_243_cov_18.352459:1-243 [pilon] Processing NODE_11768_length_255_cov_8.604478:1-255 [pilon] NODE_3105_length_851_cov_1.926027:1-851 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 48, Coverage: 7, minDepth: 5 [pilon] Confirmed 550 of 851 bases (64.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3105_length_851_cov_1.926027:1-851 [pilon] Processing NODE_8042_length_416_cov_4.986441:1-416 [pilon] NODE_2440_length_980_cov_16.388824:1-980 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 351, Coverage: 34, minDepth: 9 [pilon] Confirmed 704 of 980 bases (71.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2440_length_980_cov_16.388824:1-980 [pilon] Processing NODE_2634_length_941_cov_2.752439:1-941 [pilon] NODE_7444_length_446_cov_16.772308:1-446 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 132, Coverage: 12, minDepth: 5 [pilon] Confirmed 278 of 446 bases (62.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7444_length_446_cov_16.772308:1-446 [pilon] Processing NODE_13017_length_243_cov_22.754098:1-243 [pilon] NODE_574_length_1833_cov_3.242991:1-1833 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 172, Coverage: 12, minDepth: 5 [pilon] Confirmed 1579 of 1833 bases (86.14%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_574_length_1833_cov_3.242991:1-1833 [pilon] Processing NODE_3852_length_734_cov_3.464927:1-734 [pilon] NODE_14542_length_243_cov_9.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14542_length_243_cov_9.959016:1-243 [pilon] Processing NODE_14985_length_243_cov_5.622951:1-243 [pilon] NODE_8298_length_405_cov_1.510563:1-405 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 24 of 405 bases (5.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8298_length_405_cov_1.510563:1-405 [pilon] Processing NODE_8204_length_408_cov_17.853659:1-408 [pilon] NODE_9769_length_336_cov_9.809302:1-336 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 336 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9769_length_336_cov_9.809302:1-336 [pilon] Processing NODE_7679_length_434_cov_0.488818:1-434 [pilon] NODE_10958_length_285_cov_24.347561:1-285 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 86, Coverage: 10, minDepth: 5 [pilon] Confirmed 215 of 285 bases (75.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10958_length_285_cov_24.347561:1-285 [pilon] Processing NODE_5398_length_584_cov_18.647948:1-584 [pilon] NODE_8552_length_391_cov_16.900000:1-391 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 109, Coverage: 18, minDepth: 5 [pilon] Confirmed 313 of 391 bases (80.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8552_length_391_cov_16.900000:1-391 [pilon] Processing NODE_510_length_1907_cov_2.678611:1-1907 [pilon] NODE_3876_length_731_cov_4.285246:1-731 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 65, Coverage: 12, minDepth: 5 [pilon] Confirmed 459 of 731 bases (62.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3876_length_731_cov_4.285246:1-731 [pilon] Processing NODE_14377_length_243_cov_11.237705:1-243 [pilon] NODE_10523_length_303_cov_29.428571:1-303 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 110, Coverage: 18, minDepth: 5 [pilon] Confirmed 252 of 303 bases (83.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10523_length_303_cov_29.428571:1-303 [pilon] Processing NODE_2795_length_910_cov_1.285171:1-910 [pilon] NODE_8550_length_391_cov_21.100000:1-391 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 117, Coverage: 13, minDepth: 5 [pilon] Confirmed 290 of 391 bases (74.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8550_length_391_cov_21.100000:1-391 [pilon] Processing NODE_7043_length_468_cov_21.322767:1-468 [pilon] NODE_1838_length_1133_cov_0.596838:1-1133 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 24, Coverage: 3, minDepth: 5 [pilon] Confirmed 99 of 1133 bases (8.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1838_length_1133_cov_0.596838:1-1133 [pilon] Processing NODE_6129_length_529_cov_38.235294:1-529 [pilon] NODE_11148_length_278_cov_7.777070:1-278 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 20, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 278 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11148_length_278_cov_7.777070:1-278 [pilon] Processing NODE_851_length_1597_cov_3.043360:1-1597 [pilon] NODE_5863_length_551_cov_0.662791:1-551 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 10 of 551 bases (1.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5863_length_551_cov_0.662791:1-551 [pilon] Processing NODE_2531_length_960_cov_37.525626:1-960 [pilon] NODE_12011_length_246_cov_15.136000:1-246 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 43, Coverage: 5, minDepth: 5 [pilon] Confirmed 164 of 246 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12011_length_246_cov_15.136000:1-246 [pilon] Processing NODE_2824_length_906_cov_2.834395:1-906 [pilon] NODE_5220_length_600_cov_1.632568:1-600 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 310 of 600 bases (51.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5220_length_600_cov_1.632568:1-600 [pilon] Processing NODE_8634_length_386_cov_19.871698:1-386 [pilon] NODE_11888_length_249_cov_24.609375:1-249 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 65, Coverage: 6, minDepth: 5 [pilon] Confirmed 145 of 249 bases (58.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11888_length_249_cov_24.609375:1-249 [pilon] Processing NODE_2715_length_926_cov_14.354037:1-926 [pilon] NODE_13270_length_243_cov_20.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13270_length_243_cov_20.409836:1-243 [pilon] Processing NODE_10015_length_324_cov_27.004926:1-324 [pilon] NODE_4427_length_668_cov_41.740402:1-668 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 536, Coverage: 73, minDepth: 18 [pilon] Confirmed 613 of 668 bases (91.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4427_length_668_cov_41.740402:1-668 [pilon] Processing NODE_4106_length_704_cov_13.353345:1-704 [pilon] NODE_12180_length_243_cov_37.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12180_length_243_cov_37.532787:1-243 [pilon] Processing NODE_11290_length_273_cov_7.710526:1-273 [pilon] NODE_7556_length_440_cov_48.241379:1-440 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 336, Coverage: 65, minDepth: 16 [pilon] Confirmed 367 of 440 bases (83.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7556_length_440_cov_48.241379:1-440 [pilon] Processing NODE_8718_length_381_cov_23.619231:1-381 [pilon] NODE_4238_length_689_cov_3.258803:1-689 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 404 of 689 bases (58.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4238_length_689_cov_3.258803:1-689 [pilon] Processing NODE_628_length_1773_cov_4.040557:1-1773 [pilon] NODE_13693_length_243_cov_16.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13693_length_243_cov_16.459016:1-243 [pilon] Processing NODE_11833_length_252_cov_12.816794:1-252 [pilon] NODE_9833_length_333_cov_13.919811:1-333 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 69, Coverage: 3, minDepth: 5 [pilon] Confirmed 109 of 333 bases (32.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9833_length_333_cov_13.919811:1-333 [pilon] Processing NODE_2496_length_968_cov_25.356553:1-968 [pilon] NODE_7966_length_420_cov_1.381271:1-420 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 213 of 420 bases (50.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7966_length_420_cov_1.381271:1-420 [pilon] NODE_14617_length_243_cov_9.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14617_length_243_cov_9.278689:1-243 [pilon] Processing NODE_8536_length_392_cov_22.490775:1-392 [pilon] Processing NODE_7540_length_441_cov_20.415625:1-441 [pilon] NODE_2132_length_1051_cov_20.546237:1-1051 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 554, Coverage: 45, minDepth: 11 [pilon] Confirmed 872 of 1051 bases (82.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2132_length_1051_cov_20.546237:1-1051 [pilon] Processing NODE_12384_length_243_cov_31.368852:1-243 [pilon] NODE_8042_length_416_cov_4.986441:1-416 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 33, Coverage: 9, minDepth: 5 [pilon] Confirmed 298 of 416 bases (71.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8042_length_416_cov_4.986441:1-416 [pilon] Processing NODE_12197_length_243_cov_36.901639:1-243 [pilon] NODE_2634_length_941_cov_2.752439:1-941 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 69, Coverage: 9, minDepth: 5 [pilon] Confirmed 641 of 941 bases (68.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2634_length_941_cov_2.752439:1-941 [pilon] Processing NODE_5298_length_593_cov_1.042373:1-593 [pilon] NODE_11768_length_255_cov_8.604478:1-255 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11768_length_255_cov_8.604478:1-255 [pilon] Processing NODE_5655_length_566_cov_19.993258:1-566 [pilon] NODE_14377_length_243_cov_11.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14377_length_243_cov_11.237705:1-243 [pilon] NODE_7043_length_468_cov_21.322767:1-468 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 165, Coverage: 7, minDepth: 5 [pilon] Confirmed 264 of 468 bases (56.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7043_length_468_cov_21.322767:1-468 [pilon] Processing NODE_2885_length_895_cov_17.165375:1-895 [pilon] Processing NODE_374_length_2089_cov_2.665650:1-2089 [pilon] NODE_8204_length_408_cov_17.853659:1-408 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 106, Coverage: 13, minDepth: 5 [pilon] Confirmed 229 of 408 bases (56.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8204_length_408_cov_17.853659:1-408 [pilon] Processing NODE_3068_length_859_cov_21.157182:1-859 [pilon] NODE_7679_length_434_cov_0.488818:1-434 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 434 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7679_length_434_cov_0.488818:1-434 [pilon] Processing NODE_4709_length_642_cov_29.905950:1-642 [pilon] NODE_14985_length_243_cov_5.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14985_length_243_cov_5.622951:1-243 [pilon] Processing NODE_15166_length_180_cov_5.237288:1-180 [pilon] NODE_5398_length_584_cov_18.647948:1-584 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 196, Coverage: 20, minDepth: 5 [pilon] Confirmed 481 of 584 bases (82.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5398_length_584_cov_18.647948:1-584 [pilon] Processing NODE_6485_length_504_cov_21.159269:1-504 [pilon] NODE_13017_length_243_cov_22.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13017_length_243_cov_22.754098:1-243 [pilon] Processing NODE_9611_length_341_cov_56.568182:1-341 [pilon] NODE_3852_length_734_cov_3.464927:1-734 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 59, Coverage: 10, minDepth: 5 [pilon] Confirmed 510 of 734 bases (69.48%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3852_length_734_cov_3.464927:1-734 [pilon] Processing NODE_5273_length_595_cov_0.909283:1-595 [pilon] NODE_2824_length_906_cov_2.834395:1-906 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 62, Coverage: 9, minDepth: 5 [pilon] Confirmed 739 of 906 bases (81.57%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2824_length_906_cov_2.834395:1-906 [pilon] Processing NODE_10644_length_300_cov_12.731844:1-300 [pilon] NODE_2795_length_910_cov_1.285171:1-910 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 48, Coverage: 6, minDepth: 5 [pilon] Confirmed 628 of 910 bases (69.01%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2795_length_910_cov_1.285171:1-910 [pilon] Processing NODE_1921_length_1106_cov_35.724873:1-1106 [pilon] NODE_510_length_1907_cov_2.678611:1-1907 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 134, Coverage: 9, minDepth: 5 [pilon] Confirmed 1358 of 1907 bases (71.21%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_510_length_1907_cov_2.678611:1-1907 [pilon] Processing NODE_146_length_2746_cov_2.645333:1-2746 [pilon] NODE_851_length_1597_cov_3.043360:1-1597 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 122, Coverage: 10, minDepth: 5 [pilon] Confirmed 1458 of 1597 bases (91.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_851_length_1597_cov_3.043360:1-1597 [pilon] Processing NODE_7313_length_453_cov_0.978916:1-453 [pilon] NODE_8634_length_386_cov_19.871698:1-386 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 116, Coverage: 21, minDepth: 5 [pilon] Confirmed 322 of 386 bases (83.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8634_length_386_cov_19.871698:1-386 [pilon] Processing NODE_10175_length_318_cov_18.091371:1-318 [pilon] NODE_6129_length_529_cov_38.235294:1-529 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 351, Coverage: 51, minDepth: 13 [pilon] Confirmed 493 of 529 bases (93.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6129_length_529_cov_38.235294:1-529 [pilon] Processing NODE_1889_length_1116_cov_26.081407:1-1116 [pilon] NODE_2531_length_960_cov_37.525626:1-960 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 734, Coverage: 85, minDepth: 21 [pilon] Confirmed 852 of 960 bases (88.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2531_length_960_cov_37.525626:1-960 [pilon] Processing NODE_5868_length_550_cov_3.011655:1-550 [pilon] NODE_10015_length_324_cov_27.004926:1-324 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 107, Coverage: 8, minDepth: 5 [pilon] Confirmed 178 of 324 bases (54.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10015_length_324_cov_27.004926:1-324 [pilon] Processing NODE_843_length_1603_cov_11.848178:1-1603 [pilon] NODE_2715_length_926_cov_14.354037:1-926 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 299, Coverage: 27, minDepth: 7 [pilon] Confirmed 738 of 926 bases (79.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2715_length_926_cov_14.354037:1-926 [pilon] Processing NODE_2001_length_1086_cov_29.139896:1-1086 [pilon] NODE_11290_length_273_cov_7.710526:1-273 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11290_length_273_cov_7.710526:1-273 [pilon] Processing NODE_838_length_1608_cov_12.316745:1-1608 [pilon] NODE_628_length_1773_cov_4.040557:1-1773 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 155, Coverage: 11, minDepth: 5 [pilon] Confirmed 1485 of 1773 bases (83.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_628_length_1773_cov_4.040557:1-1773 [pilon] Processing NODE_14423_length_243_cov_10.901639:1-243 [pilon] NODE_8718_length_381_cov_23.619231:1-381 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 128, Coverage: 16, minDepth: 5 [pilon] Confirmed 277 of 381 bases (72.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8718_length_381_cov_23.619231:1-381 [pilon] Processing NODE_4368_length_674_cov_13.631103:1-674 [pilon] NODE_4106_length_704_cov_13.353345:1-704 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 186, Coverage: 14, minDepth: 5 [pilon] Confirmed 494 of 704 bases (70.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4106_length_704_cov_13.353345:1-704 [pilon] Processing NODE_13434_length_243_cov_18.967213:1-243 [pilon] NODE_2885_length_895_cov_17.165375:1-895 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 322, Coverage: 35, minDepth: 9 [pilon] Confirmed 699 of 895 bases (78.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2885_length_895_cov_17.165375:1-895 [pilon] Processing NODE_13992_length_243_cov_14.221311:1-243 [pilon] NODE_11833_length_252_cov_12.816794:1-252 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 39, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11833_length_252_cov_12.816794:1-252 [pilon] Processing NODE_5208_length_601_cov_1.458333:1-601 [pilon] NODE_374_length_2089_cov_2.665650:1-2089 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 153, Coverage: 9, minDepth: 5 [pilon] Confirmed 1520 of 2089 bases (72.76%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_374_length_2089_cov_2.665650:1-2089 [pilon] Processing NODE_10420_length_308_cov_10.336898:1-308 [pilon] NODE_10644_length_300_cov_12.731844:1-300 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 56, Coverage: 4, minDepth: 5 [pilon] Confirmed 150 of 300 bases (50.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10644_length_300_cov_12.731844:1-300 [pilon] Processing NODE_6200_length_524_cov_13.808933:1-524 [pilon] NODE_8536_length_392_cov_22.490775:1-392 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 135, Coverage: 8, minDepth: 5 [pilon] Confirmed 246 of 392 bases (62.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8536_length_392_cov_22.490775:1-392 [pilon] Processing NODE_5674_length_564_cov_43.514673:1-564 [pilon] NODE_2496_length_968_cov_25.356553:1-968 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 452, Coverage: 39, minDepth: 10 [pilon] Confirmed 827 of 968 bases (85.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2496_length_968_cov_25.356553:1-968 [pilon] Processing NODE_11868_length_250_cov_19.728682:1-250 [pilon] NODE_7540_length_441_cov_20.415625:1-441 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 131, Coverage: 13, minDepth: 5 [pilon] Confirmed 237 of 441 bases (53.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7540_length_441_cov_20.415625:1-441 [pilon] Processing NODE_2477_length_971_cov_3.847059:1-971 [pilon] NODE_12197_length_243_cov_36.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 93, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12197_length_243_cov_36.901639:1-243 [pilon] Processing NODE_5677_length_564_cov_27.604966:1-564 [pilon] NODE_12384_length_243_cov_31.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12384_length_243_cov_31.368852:1-243 [pilon] Processing NODE_10450_length_306_cov_19.037838:1-306 [pilon] NODE_5298_length_593_cov_1.042373:1-593 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 324 of 593 bases (54.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5298_length_593_cov_1.042373:1-593 [pilon] Processing NODE_11903_length_249_cov_17.703125:1-249 [pilon] NODE_5655_length_566_cov_19.993258:1-566 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 191, Coverage: 19, minDepth: 5 [pilon] Confirmed 468 of 566 bases (82.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5655_length_566_cov_19.993258:1-566 [pilon] Processing NODE_10878_length_289_cov_8.589286:1-289 [pilon] NODE_3068_length_859_cov_21.157182:1-859 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 361, Coverage: 54, minDepth: 14 [pilon] Confirmed 551 of 859 bases (64.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3068_length_859_cov_21.157182:1-859 [pilon] Processing NODE_4904_length_626_cov_8.936634:1-626 [pilon] NODE_5273_length_595_cov_0.909283:1-595 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 169 of 595 bases (28.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5273_length_595_cov_0.909283:1-595 [pilon] Processing NODE_2491_length_969_cov_9.252358:1-969 [pilon] NODE_9611_length_341_cov_56.568182:1-341 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 267, Coverage: 42, minDepth: 11 [pilon] Confirmed 297 of 341 bases (87.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9611_length_341_cov_56.568182:1-341 [pilon] Processing NODE_4601_length_653_cov_1.270677:1-653 [pilon] NODE_4709_length_642_cov_29.905950:1-642 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 372, Coverage: 43, minDepth: 11 [pilon] Confirmed 513 of 642 bases (79.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4709_length_642_cov_29.905950:1-642 [pilon] Processing NODE_12121_length_243_cov_43.450820:1-243 [pilon] NODE_15166_length_180_cov_5.237288:1-180 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 180 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15166_length_180_cov_5.237288:1-180 [pilon] Processing NODE_9550_length_344_cov_24.130045:1-344 [pilon] NODE_6485_length_504_cov_21.159269:1-504 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 210, Coverage: 19, minDepth: 5 [pilon] Confirmed 319 of 504 bases (63.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6485_length_504_cov_21.159269:1-504 [pilon] Processing NODE_1271_length_1354_cov_1.478508:1-1354 [pilon] NODE_7313_length_453_cov_0.978916:1-453 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 78 of 453 bases (17.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7313_length_453_cov_0.978916:1-453 [pilon] Processing NODE_13565_length_243_cov_17.770492:1-243 [pilon] NODE_146_length_2746_cov_2.645333:1-2746 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 188, Coverage: 9, minDepth: 5 [pilon] Confirmed 1794 of 2746 bases (65.33%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_146_length_2746_cov_2.645333:1-2746 [pilon] Processing NODE_4993_length_619_cov_1.951807:1-619 [pilon] NODE_10420_length_308_cov_10.336898:1-308 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 45, Coverage: 5, minDepth: 5 [pilon] Confirmed 145 of 308 bases (47.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10420_length_308_cov_10.336898:1-308 [pilon] Processing NODE_8380_length_401_cov_23.142857:1-401 [pilon] NODE_10175_length_318_cov_18.091371:1-318 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 71, Coverage: 5, minDepth: 5 [pilon] Confirmed 171 of 318 bases (53.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10175_length_318_cov_18.091371:1-318 [pilon] Processing NODE_662_length_1736_cov_2.338080:1-1736 [pilon] NODE_1921_length_1106_cov_35.724873:1-1106 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 965, Coverage: 70, minDepth: 18 [pilon] Confirmed 842 of 1106 bases (76.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1921_length_1106_cov_35.724873:1-1106 [pilon] Processing NODE_14069_length_243_cov_13.680328:1-243 [pilon] NODE_13992_length_243_cov_14.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13992_length_243_cov_14.221311:1-243 [pilon] Processing NODE_3214_length_831_cov_3.767606:1-831 [pilon] NODE_6200_length_524_cov_13.808933:1-524 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 138, Coverage: 12, minDepth: 5 [pilon] Confirmed 451 of 524 bases (86.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6200_length_524_cov_13.808933:1-524 [pilon] Processing NODE_9604_length_342_cov_9.782805:1-342 [pilon] NODE_5868_length_550_cov_3.011655:1-550 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 33, Coverage: 7, minDepth: 5 [pilon] Confirmed 317 of 550 bases (57.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5868_length_550_cov_3.011655:1-550 [pilon] Processing NODE_4216_length_692_cov_6.898424:1-692 [pilon] NODE_1889_length_1116_cov_26.081407:1-1116 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 537, Coverage: 39, minDepth: 10 [pilon] Confirmed 846 of 1116 bases (75.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1889_length_1116_cov_26.081407:1-1116 [pilon] Processing NODE_1953_length_1096_cov_26.383590:1-1096 [pilon] NODE_14423_length_243_cov_10.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14423_length_243_cov_10.901639:1-243 [pilon] Processing NODE_8018_length_417_cov_26.189189:1-417 [pilon] NODE_843_length_1603_cov_11.848178:1-1603 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 447, Coverage: 34, minDepth: 9 [pilon] Confirmed 1328 of 1603 bases (82.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_843_length_1603_cov_11.848178:1-1603 [pilon] Processing NODE_4523_length_659_cov_42.862454:1-659 [pilon] NODE_2001_length_1086_cov_29.139896:1-1086 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 659, Coverage: 59, minDepth: 15 [pilon] Confirmed 890 of 1086 bases (81.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2001_length_1086_cov_29.139896:1-1086 [pilon] NODE_838_length_1608_cov_12.316745:1-1608 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 436, Coverage: 35, minDepth: 9 [pilon] Confirmed 1150 of 1608 bases (71.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_838_length_1608_cov_12.316745:1-1608 [pilon] Processing NODE_14034_length_243_cov_13.950820:1-243 [pilon] Processing NODE_10637_length_300_cov_14.944134:1-300 [pilon] NODE_13434_length_243_cov_18.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13434_length_243_cov_18.967213:1-243 [pilon] Processing NODE_1261_length_1358_cov_3.337106:1-1358 [pilon] NODE_5208_length_601_cov_1.458333:1-601 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 316 of 601 bases (52.58%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5208_length_601_cov_1.458333:1-601 [pilon] Processing NODE_7024_length_470_cov_17.094556:1-470 [pilon] NODE_4368_length_674_cov_13.631103:1-674 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 180, Coverage: 24, minDepth: 6 [pilon] Confirmed 606 of 674 bases (89.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4368_length_674_cov_13.631103:1-674 [pilon] Processing NODE_1609_length_1213_cov_18.075092:1-1213 [pilon] NODE_10878_length_289_cov_8.589286:1-289 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 289 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10878_length_289_cov_8.589286:1-289 [pilon] Processing NODE_3776_length_744_cov_2.134831:1-744 [pilon] NODE_11868_length_250_cov_19.728682:1-250 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 57, Coverage: 8, minDepth: 5 [pilon] Confirmed 164 of 250 bases (65.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11868_length_250_cov_19.728682:1-250 [pilon] Processing NODE_1341_length_1324_cov_41.421446:1-1324 [pilon] NODE_10450_length_306_cov_19.037838:1-306 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 77, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10450_length_306_cov_19.037838:1-306 [pilon] Processing NODE_157_length_2699_cov_2.934445:1-2699 [pilon] NODE_5674_length_564_cov_43.514673:1-564 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 435, Coverage: 71, minDepth: 18 [pilon] Confirmed 472 of 564 bases (83.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5674_length_564_cov_43.514673:1-564 [pilon] Processing NODE_7758_length_429_cov_22.379870:1-429 [pilon] NODE_2477_length_971_cov_3.847059:1-971 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 80, Coverage: 11, minDepth: 5 [pilon] Confirmed 664 of 971 bases (68.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2477_length_971_cov_3.847059:1-971 [pilon] Processing NODE_6322_length_515_cov_48.840102:1-515 [pilon] NODE_5677_length_564_cov_27.604966:1-564 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 297, Coverage: 41, minDepth: 10 [pilon] Confirmed 476 of 564 bases (84.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5677_length_564_cov_27.604966:1-564 [pilon] Processing NODE_3073_length_858_cov_35.523745:1-858 [pilon] NODE_11903_length_249_cov_17.703125:1-249 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 41, Coverage: 4, minDepth: 5 [pilon] Confirmed 101 of 249 bases (40.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11903_length_249_cov_17.703125:1-249 [pilon] Processing NODE_9636_length_340_cov_9.319635:1-340 [pilon] NODE_12121_length_243_cov_43.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12121_length_243_cov_43.450820:1-243 [pilon] Processing NODE_8652_length_385_cov_12.564394:1-385 [pilon] NODE_4904_length_626_cov_8.936634:1-626 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 121, Coverage: 17, minDepth: 5 [pilon] Confirmed 516 of 626 bases (82.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4904_length_626_cov_8.936634:1-626 [pilon] Processing NODE_7197_length_460_cov_4.333333:1-460 [pilon] NODE_4601_length_653_cov_1.270677:1-653 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 278 of 653 bases (42.57%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4601_length_653_cov_1.270677:1-653 [pilon] Processing NODE_10614_length_300_cov_24.441341:1-300 [pilon] NODE_3214_length_831_cov_3.767606:1-831 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 67, Coverage: 10, minDepth: 5 [pilon] Confirmed 612 of 831 bases (73.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3214_length_831_cov_3.767606:1-831 [pilon] Processing NODE_642_length_1758_cov_12.075748:1-1758 [pilon] NODE_1271_length_1354_cov_1.478508:1-1354 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 52, Coverage: 5, minDepth: 5 [pilon] Confirmed 619 of 1354 bases (45.72%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1271_length_1354_cov_1.478508:1-1354 [pilon] Processing NODE_9291_length_354_cov_18.163090:1-354 [pilon] NODE_2491_length_969_cov_9.252358:1-969 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 185, Coverage: 25, minDepth: 6 [pilon] Confirmed 711 of 969 bases (73.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2491_length_969_cov_9.252358:1-969 [pilon] Processing NODE_7609_length_437_cov_16.933544:1-437 [pilon] NODE_9604_length_342_cov_9.782805:1-342 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 56, Coverage: 6, minDepth: 5 [pilon] Confirmed 229 of 342 bases (66.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9604_length_342_cov_9.782805:1-342 [pilon] Processing NODE_3978_length_717_cov_2.592282:1-717 [pilon] NODE_9550_length_344_cov_24.130045:1-344 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 116, Coverage: 18, minDepth: 5 [pilon] Confirmed 289 of 344 bases (84.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9550_length_344_cov_24.130045:1-344 [pilon] Processing NODE_13061_length_243_cov_22.311475:1-243 [pilon] NODE_13565_length_243_cov_17.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13565_length_243_cov_17.770492:1-243 [pilon] Processing NODE_6427_length_508_cov_14.506460:1-508 [pilon] NODE_8380_length_401_cov_23.142857:1-401 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 149, Coverage: 24, minDepth: 6 [pilon] Confirmed 355 of 401 bases (88.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8380_length_401_cov_23.142857:1-401 [pilon] Processing NODE_8465_length_396_cov_12.665455:1-396 [pilon] NODE_4993_length_619_cov_1.951807:1-619 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 37, Coverage: 7, minDepth: 5 [pilon] Confirmed 387 of 619 bases (62.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4993_length_619_cov_1.951807:1-619 [pilon] Processing NODE_13717_length_243_cov_16.286885:1-243 [pilon] NODE_14069_length_243_cov_13.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14069_length_243_cov_13.680328:1-243 [pilon] Processing NODE_14803_length_243_cov_7.688525:1-243 [pilon] NODE_662_length_1736_cov_2.338080:1-1736 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 111, Coverage: 8, minDepth: 5 [pilon] Confirmed 1099 of 1736 bases (63.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_662_length_1736_cov_2.338080:1-1736 [pilon] Processing NODE_2288_length_1014_cov_5.590146:1-1014 [pilon] NODE_4216_length_692_cov_6.898424:1-692 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 83, Coverage: 10, minDepth: 5 [pilon] Confirmed 412 of 692 bases (59.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4216_length_692_cov_6.898424:1-692 [pilon] Processing NODE_11979_length_246_cov_27.576000:1-246 [pilon] NODE_1953_length_1096_cov_26.383590:1-1096 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 595, Coverage: 54, minDepth: 14 [pilon] Confirmed 613 of 1096 bases (55.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1953_length_1096_cov_26.383590:1-1096 [pilon] Processing NODE_810_length_1621_cov_56.018000:1-1621 [pilon] NODE_3776_length_744_cov_2.134831:1-744 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 38, Coverage: 6, minDepth: 5 [pilon] Confirmed 420 of 744 bases (56.45%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3776_length_744_cov_2.134831:1-744 [pilon] Processing NODE_6997_length_471_cov_36.711429:1-471 [pilon] NODE_8018_length_417_cov_26.189189:1-417 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 173, Coverage: 22, minDepth: 6 [pilon] Confirmed 321 of 417 bases (76.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8018_length_417_cov_26.189189:1-417 [pilon] Processing NODE_4124_length_702_cov_18.555938:1-702 [pilon] NODE_14034_length_243_cov_13.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14034_length_243_cov_13.950820:1-243 [pilon] Processing NODE_7057_length_467_cov_68.526012:1-467 [pilon] NODE_10637_length_300_cov_14.944134:1-300 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 55, Coverage: 5, minDepth: 5 [pilon] Confirmed 179 of 300 bases (59.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10637_length_300_cov_14.944134:1-300 [pilon] Processing NODE_436_length_1986_cov_2.698660:1-1986 [pilon] NODE_1261_length_1358_cov_3.337106:1-1358 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 123, Coverage: 12, minDepth: 5 [pilon] Confirmed 1203 of 1358 bases (88.59%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1261_length_1358_cov_3.337106:1-1358 [pilon] Processing NODE_1236_length_1372_cov_1.889688:1-1372 [pilon] NODE_4523_length_659_cov_42.862454:1-659 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 542, Coverage: 76, minDepth: 19 [pilon] Confirmed 615 of 659 bases (93.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4523_length_659_cov_42.862454:1-659 [pilon] Processing NODE_9603_length_342_cov_10.859729:1-342 [pilon] NODE_7024_length_470_cov_17.094556:1-470 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 132, Coverage: 12, minDepth: 5 [pilon] Confirmed 270 of 470 bases (57.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7024_length_470_cov_17.094556:1-470 [pilon] Processing NODE_2557_length_955_cov_21.032374:1-955 [pilon] NODE_642_length_1758_cov_12.075748:1-1758 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 447, Coverage: 33, minDepth: 8 [pilon] Confirmed 1267 of 1758 bases (72.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_642_length_1758_cov_12.075748:1-1758 [pilon] Processing NODE_904_length_1554_cov_5.335659:1-1554 [pilon] NODE_1609_length_1213_cov_18.075092:1-1213 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 437, Coverage: 37, minDepth: 9 [pilon] Confirmed 1030 of 1213 bases (84.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1609_length_1213_cov_18.075092:1-1213 [pilon] Processing NODE_1284_length_1347_cov_3.644372:1-1347 [pilon] NODE_9636_length_340_cov_9.319635:1-340 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 46, Coverage: 4, minDepth: 5 [pilon] Confirmed 138 of 340 bases (40.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9636_length_340_cov_9.319635:1-340 [pilon] Processing NODE_13599_length_243_cov_17.508197:1-243 [pilon] NODE_7758_length_429_cov_22.379870:1-429 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 151, Coverage: 5, minDepth: 5 [pilon] Confirmed 188 of 429 bases (43.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7758_length_429_cov_22.379870:1-429 [pilon] Processing NODE_7192_length_460_cov_14.542773:1-460 [pilon] NODE_3978_length_717_cov_2.592282:1-717 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 44, Coverage: 7, minDepth: 5 [pilon] Confirmed 483 of 717 bases (67.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3978_length_717_cov_2.592282:1-717 [pilon] Processing NODE_13076_length_243_cov_22.180328:1-243 [pilon] NODE_1341_length_1324_cov_41.421446:1-1324 log: [pilon] frags shovill.bam: coverage 102 [pilon] Total Reads: 1173, Coverage: 102, minDepth: 26 [pilon] Confirmed 1202 of 1324 bases (90.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1341_length_1324_cov_41.421446:1-1324 [pilon] Processing NODE_9232_length_357_cov_5.491525:1-357 [pilon] NODE_157_length_2699_cov_2.934445:1-2699 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 202, Coverage: 9, minDepth: 5 [pilon] Confirmed 1912 of 2699 bases (70.84%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_157_length_2699_cov_2.934445:1-2699 [pilon] Processing NODE_6261_length_520_cov_25.523810:1-520 [pilon] NODE_6322_length_515_cov_48.840102:1-515 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 449, Coverage: 68, minDepth: 17 [pilon] Confirmed 469 of 515 bases (91.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6322_length_515_cov_48.840102:1-515 [pilon] Processing NODE_3620_length_765_cov_21.594720:1-765 [pilon] NODE_3073_length_858_cov_35.523745:1-858 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 610, Coverage: 50, minDepth: 13 [pilon] Confirmed 650 of 858 bases (75.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3073_length_858_cov_35.523745:1-858 [pilon] Processing NODE_5301_length_592_cov_49.454352:1-592 [pilon] NODE_9291_length_354_cov_18.163090:1-354 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 84, Coverage: 7, minDepth: 5 [pilon] Confirmed 167 of 354 bases (47.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9291_length_354_cov_18.163090:1-354 [pilon] Processing NODE_12502_length_243_cov_29.098361:1-243 [pilon] NODE_7197_length_460_cov_4.333333:1-460 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 26, Coverage: 7, minDepth: 5 [pilon] Confirmed 334 of 460 bases (72.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7197_length_460_cov_4.333333:1-460 [pilon] Processing NODE_5173_length_603_cov_41.369295:1-603 [pilon] NODE_8652_length_385_cov_12.564394:1-385 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 69, Coverage: 10, minDepth: 5 [pilon] Confirmed 228 of 385 bases (59.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8652_length_385_cov_12.564394:1-385 [pilon] Processing NODE_5912_length_547_cov_1.870892:1-547 [pilon] NODE_10614_length_300_cov_24.441341:1-300 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 107, Coverage: 16, minDepth: 5 [pilon] Confirmed 240 of 300 bases (80.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10614_length_300_cov_24.441341:1-300 [pilon] Processing NODE_14018_length_243_cov_14.057377:1-243 [pilon] NODE_7609_length_437_cov_16.933544:1-437 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 120, Coverage: 21, minDepth: 5 [pilon] Confirmed 338 of 437 bases (77.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7609_length_437_cov_16.933544:1-437 [pilon] Processing NODE_7343_length_451_cov_10.781818:1-451 [pilon] NODE_6427_length_508_cov_14.506460:1-508 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 119, Coverage: 15, minDepth: 5 [pilon] Confirmed 375 of 508 bases (73.82%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6427_length_508_cov_14.506460:1-508 [pilon] Processing NODE_11471_length_264_cov_19.986014:1-264 [pilon] NODE_6997_length_471_cov_36.711429:1-471 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 297, Coverage: 31, minDepth: 8 [pilon] Confirmed 357 of 471 bases (75.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6997_length_471_cov_36.711429:1-471 [pilon] Processing NODE_4098_length_705_cov_12.037671:1-705 [pilon] NODE_13717_length_243_cov_16.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13717_length_243_cov_16.286885:1-243 [pilon] Processing NODE_7646_length_435_cov_27.114650:1-435 [pilon] NODE_8465_length_396_cov_12.665455:1-396 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 95, Coverage: 3, minDepth: 5 [pilon] Confirmed 137 of 396 bases (34.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8465_length_396_cov_12.665455:1-396 [pilon] Processing NODE_12095_length_244_cov_11.317073:1-244 [pilon] NODE_13061_length_243_cov_22.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13061_length_243_cov_22.311475:1-243 [pilon] Processing NODE_7576_length_439_cov_13.141509:1-439 [pilon] NODE_11979_length_246_cov_27.576000:1-246 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 67, Coverage: 8, minDepth: 5 [pilon] Confirmed 159 of 246 bases (64.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11979_length_246_cov_27.576000:1-246 [pilon] Processing NODE_14417_length_243_cov_10.918033:1-243 [pilon] NODE_2288_length_1014_cov_5.590146:1-1014 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 121, Coverage: 15, minDepth: 5 [pilon] Confirmed 544 of 1014 bases (53.65%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2288_length_1014_cov_5.590146:1-1014 [pilon] Processing NODE_8960_length_368_cov_35.368421:1-368 [pilon] NODE_14803_length_243_cov_7.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14803_length_243_cov_7.688525:1-243 [pilon] Processing NODE_6645_length_494_cov_27.278820:1-494 [pilon] NODE_904_length_1554_cov_5.335659:1-1554 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 209, Coverage: 15, minDepth: 5 [pilon] Confirmed 1143 of 1554 bases (73.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_904_length_1554_cov_5.335659:1-1554 [pilon] Processing NODE_8072_length_414_cov_28.058020:1-414 [pilon] NODE_13076_length_243_cov_22.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13076_length_243_cov_22.180328:1-243 [pilon] Processing NODE_13757_length_243_cov_15.991803:1-243 [pilon] NODE_810_length_1621_cov_56.018000:1-1621 log: [pilon] frags shovill.bam: coverage 122 [pilon] Total Reads: 1936, Coverage: 122, minDepth: 31 [pilon] Confirmed 870 of 1621 bases (53.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_810_length_1621_cov_56.018000:1-1621 [pilon] Processing NODE_9687_length_339_cov_8.857798:1-339 [pilon] NODE_7057_length_467_cov_68.526012:1-467 log: [pilon] frags shovill.bam: coverage 105 [pilon] Total Reads: 538, Coverage: 105, minDepth: 26 [pilon] Confirmed 403 of 467 bases (86.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7057_length_467_cov_68.526012:1-467 [pilon] Processing NODE_1656_length_1198_cov_21.374188:1-1198 [pilon] NODE_4124_length_702_cov_18.555938:1-702 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 247, Coverage: 33, minDepth: 8 [pilon] Confirmed 581 of 702 bases (82.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4124_length_702_cov_18.555938:1-702 [pilon] Processing NODE_14909_length_243_cov_6.598361:1-243 [pilon] NODE_1236_length_1372_cov_1.889688:1-1372 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 63, Coverage: 6, minDepth: 5 [pilon] Confirmed 752 of 1372 bases (54.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1236_length_1372_cov_1.889688:1-1372 [pilon] Processing NODE_1573_length_1229_cov_8.765343:1-1229 [pilon] NODE_9603_length_342_cov_10.859729:1-342 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 54, Coverage: 4, minDepth: 5 [pilon] Confirmed 134 of 342 bases (39.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9603_length_342_cov_10.859729:1-342 [pilon] Processing NODE_8182_length_409_cov_7.750000:1-409 [pilon] NODE_436_length_1986_cov_2.698660:1-1986 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 145, Coverage: 9, minDepth: 5 [pilon] Confirmed 1658 of 1986 bases (83.48%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_436_length_1986_cov_2.698660:1-1986 [pilon] Processing NODE_13008_length_243_cov_22.844262:1-243 [pilon] NODE_2557_length_955_cov_21.032374:1-955 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 403, Coverage: 43, minDepth: 11 [pilon] Confirmed 641 of 955 bases (67.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2557_length_955_cov_21.032374:1-955 [pilon] Processing NODE_4109_length_704_cov_11.104631:1-704 [pilon] NODE_13599_length_243_cov_17.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13599_length_243_cov_17.508197:1-243 [pilon] NODE_9232_length_357_cov_5.491525:1-357 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 31, Coverage: 3, minDepth: 5 [pilon] Confirmed 103 of 357 bases (28.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9232_length_357_cov_5.491525:1-357 [pilon] Processing NODE_6768_length_485_cov_12.343407:1-485 [pilon] Processing NODE_8715_length_381_cov_25.369231:1-381 [pilon] NODE_7192_length_460_cov_14.542773:1-460 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 124, Coverage: 20, minDepth: 5 [pilon] Confirmed 319 of 460 bases (69.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7192_length_460_cov_14.542773:1-460 [pilon] Processing NODE_13472_length_243_cov_18.672131:1-243 [pilon] NODE_1284_length_1347_cov_3.644372:1-1347 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 109, Coverage: 10, minDepth: 5 [pilon] Confirmed 934 of 1347 bases (69.34%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1284_length_1347_cov_3.644372:1-1347 [pilon] Processing NODE_7755_length_429_cov_23.217532:1-429 [pilon] NODE_6261_length_520_cov_25.523810:1-520 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 248, Coverage: 38, minDepth: 10 [pilon] Confirmed 419 of 520 bases (80.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6261_length_520_cov_25.523810:1-520 [pilon] Processing NODE_5866_length_550_cov_12.613054:1-550 [pilon] NODE_3620_length_765_cov_21.594720:1-765 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 324, Coverage: 41, minDepth: 10 [pilon] Confirmed 677 of 765 bases (88.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3620_length_765_cov_21.594720:1-765 [pilon] Processing NODE_11746_length_255_cov_19.000000:1-255 [pilon] NODE_5301_length_592_cov_49.454352:1-592 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 496, Coverage: 78, minDepth: 20 [pilon] Confirmed 531 of 592 bases (89.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5301_length_592_cov_49.454352:1-592 [pilon] Processing NODE_12899_length_243_cov_24.090164:1-243 [pilon] NODE_4098_length_705_cov_12.037671:1-705 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 182, Coverage: 15, minDepth: 5 [pilon] Confirmed 491 of 705 bases (69.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4098_length_705_cov_12.037671:1-705 [pilon] Processing NODE_8669_length_384_cov_14.163498:1-384 [pilon] NODE_12502_length_243_cov_29.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12502_length_243_cov_29.098361:1-243 [pilon] Processing NODE_10017_length_324_cov_24.886700:1-324 [pilon] NODE_8072_length_414_cov_28.058020:1-414 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 159, Coverage: 15, minDepth: 5 [pilon] Confirmed 274 of 414 bases (66.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8072_length_414_cov_28.058020:1-414 [pilon] Processing NODE_7895_length_423_cov_13.519868:1-423 [pilon] NODE_5912_length_547_cov_1.870892:1-547 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 290 of 547 bases (53.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5912_length_547_cov_1.870892:1-547 [pilon] Processing NODE_13858_length_243_cov_15.237705:1-243 [pilon] NODE_13757_length_243_cov_15.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13757_length_243_cov_15.991803:1-243 [pilon] Processing NODE_2236_length_1023_cov_26.196231:1-1023 [pilon] NODE_14018_length_243_cov_14.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14018_length_243_cov_14.057377:1-243 [pilon] Processing NODE_324_length_2184_cov_20.730974:1-2184 [pilon] NODE_5173_length_603_cov_41.369295:1-603 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 511, Coverage: 84, minDepth: 21 [pilon] Confirmed 450 of 603 bases (74.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5173_length_603_cov_41.369295:1-603 [pilon] Processing NODE_8120_length_412_cov_2.182131:1-412 [pilon] NODE_7343_length_451_cov_10.781818:1-451 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 73, Coverage: 6, minDepth: 5 [pilon] Confirmed 261 of 451 bases (57.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7343_length_451_cov_10.781818:1-451 [pilon] Processing NODE_10620_length_300_cov_22.435754:1-300 [pilon] NODE_11471_length_264_cov_19.986014:1-264 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 68, Coverage: 8, minDepth: 5 [pilon] Confirmed 181 of 264 bases (68.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11471_length_264_cov_19.986014:1-264 [pilon] Processing NODE_6715_length_489_cov_19.198370:1-489 [pilon] NODE_12095_length_244_cov_11.317073:1-244 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 28, Coverage: 3, minDepth: 5 [pilon] Confirmed 24 of 244 bases (9.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12095_length_244_cov_11.317073:1-244 [pilon] Processing NODE_11932_length_248_cov_31.763780:1-248 [pilon] NODE_14417_length_243_cov_10.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14417_length_243_cov_10.918033:1-243 [pilon] Processing NODE_14012_length_243_cov_14.122951:1-243 [pilon] NODE_7646_length_435_cov_27.114650:1-435 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 206, Coverage: 40, minDepth: 10 [pilon] Confirmed 312 of 435 bases (71.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7646_length_435_cov_27.114650:1-435 [pilon] Processing NODE_4905_length_626_cov_3.708911:1-626 [pilon] NODE_7576_length_439_cov_13.141509:1-439 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 109, Coverage: 19, minDepth: 5 [pilon] Confirmed 349 of 439 bases (79.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7576_length_439_cov_13.141509:1-439 [pilon] Processing NODE_4691_length_644_cov_2.562141:1-644 [pilon] NODE_8960_length_368_cov_35.368421:1-368 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 196, Coverage: 20, minDepth: 5 [pilon] Confirmed 251 of 368 bases (68.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8960_length_368_cov_35.368421:1-368 [pilon] Processing NODE_12602_length_243_cov_27.557377:1-243 [pilon] NODE_6645_length_494_cov_27.278820:1-494 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 229, Coverage: 31, minDepth: 8 [pilon] Confirmed 365 of 494 bases (73.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6645_length_494_cov_27.278820:1-494 [pilon] Processing NODE_5177_length_603_cov_21.746888:1-603 [pilon] NODE_9687_length_339_cov_8.857798:1-339 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 41, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 339 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9687_length_339_cov_8.857798:1-339 [pilon] Processing NODE_9551_length_344_cov_14.820628:1-344 [pilon] NODE_14909_length_243_cov_6.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14909_length_243_cov_6.598361:1-243 [pilon] Processing NODE_3767_length_745_cov_12.693910:1-745 [pilon] NODE_13008_length_243_cov_22.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13008_length_243_cov_22.844262:1-243 [pilon] Processing NODE_13208_length_243_cov_20.991803:1-243 [pilon] NODE_8669_length_384_cov_14.163498:1-384 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 72, Coverage: 13, minDepth: 5 [pilon] Confirmed 269 of 384 bases (70.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8669_length_384_cov_14.163498:1-384 [pilon] Processing NODE_10713_length_297_cov_17.147727:1-297 [pilon] NODE_8182_length_409_cov_7.750000:1-409 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 63, Coverage: 14, minDepth: 5 [pilon] Confirmed 329 of 409 bases (80.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8182_length_409_cov_7.750000:1-409 [pilon] Processing NODE_5443_length_581_cov_5.771739:1-581 [pilon] NODE_1656_length_1198_cov_21.374188:1-1198 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 532, Coverage: 43, minDepth: 11 [pilon] Confirmed 1143 of 1198 bases (95.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1656_length_1198_cov_21.374188:1-1198 [pilon] Processing NODE_11316_length_270_cov_32.651007:1-270 [pilon] NODE_1573_length_1229_cov_8.765343:1-1229 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 286, Coverage: 20, minDepth: 5 [pilon] Confirmed 1036 of 1229 bases (84.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1573_length_1229_cov_8.765343:1-1229 [pilon] Processing NODE_3806_length_740_cov_2.093700:1-740 [pilon] NODE_7895_length_423_cov_13.519868:1-423 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 79, Coverage: 6, minDepth: 5 [pilon] Confirmed 202 of 423 bases (47.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7895_length_423_cov_13.519868:1-423 [pilon] Processing NODE_3960_length_720_cov_3.671119:1-720 [pilon] NODE_4109_length_704_cov_11.104631:1-704 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 163, Coverage: 11, minDepth: 5 [pilon] Confirmed 508 of 704 bases (72.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4109_length_704_cov_11.104631:1-704 [pilon] Processing NODE_9592_length_342_cov_15.588235:1-342 [pilon] NODE_8715_length_381_cov_25.369231:1-381 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 143, Coverage: 21, minDepth: 5 [pilon] Confirmed 310 of 381 bases (81.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8715_length_381_cov_25.369231:1-381 [pilon] Processing NODE_11991_length_246_cov_21.680000:1-246 [pilon] NODE_7755_length_429_cov_23.217532:1-429 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 159, Coverage: 22, minDepth: 6 [pilon] Confirmed 363 of 429 bases (84.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7755_length_429_cov_23.217532:1-429 [pilon] Processing NODE_4713_length_642_cov_18.166987:1-642 [pilon] NODE_2236_length_1023_cov_26.196231:1-1023 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 566, Coverage: 41, minDepth: 10 [pilon] Confirmed 866 of 1023 bases (84.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2236_length_1023_cov_26.196231:1-1023 [pilon] Processing NODE_11136_length_279_cov_5.651899:1-279 [pilon] NODE_6768_length_485_cov_12.343407:1-485 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 97, Coverage: 11, minDepth: 5 [pilon] Confirmed 313 of 485 bases (64.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6768_length_485_cov_12.343407:1-485 [pilon] Processing NODE_5384_length_585_cov_25.028017:1-585 [pilon] NODE_5866_length_550_cov_12.613054:1-550 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 118, Coverage: 22, minDepth: 6 [pilon] Confirmed 398 of 550 bases (72.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5866_length_550_cov_12.613054:1-550 [pilon] Processing NODE_5607_length_570_cov_16.351893:1-570 [pilon] NODE_12899_length_243_cov_24.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12899_length_243_cov_24.090164:1-243 [pilon] Processing NODE_7788_length_428_cov_14.205212:1-428 [pilon] NODE_13472_length_243_cov_18.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13472_length_243_cov_18.672131:1-243 [pilon] Processing NODE_15054_length_240_cov_12.630252:1-240 [pilon] NODE_11746_length_255_cov_19.000000:1-255 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 72, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 255 bases (50.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11746_length_255_cov_19.000000:1-255 [pilon] Processing NODE_13141_length_243_cov_21.606557:1-243 [pilon] NODE_10017_length_324_cov_24.886700:1-324 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 126, Coverage: 17, minDepth: 5 [pilon] Confirmed 256 of 324 bases (79.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10017_length_324_cov_24.886700:1-324 [pilon] Processing NODE_15069_length_237_cov_25.681034:1-237 [pilon] NODE_13858_length_243_cov_15.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13858_length_243_cov_15.237705:1-243 [pilon] Processing NODE_4023_length_713_cov_16.523649:1-713 [pilon] NODE_8120_length_412_cov_2.182131:1-412 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 412 bases (31.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8120_length_412_cov_2.182131:1-412 [pilon] Processing NODE_4782_length_636_cov_27.386408:1-636 [pilon] NODE_6715_length_489_cov_19.198370:1-489 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 173, Coverage: 17, minDepth: 5 [pilon] Confirmed 297 of 489 bases (60.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6715_length_489_cov_19.198370:1-489 [pilon] Processing NODE_507_length_1908_cov_24.574706:1-1908 [pilon] NODE_324_length_2184_cov_20.730974:1-2184 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 1120, Coverage: 62, minDepth: 16 [pilon] Confirmed 1791 of 2184 bases (82.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_324_length_2184_cov_20.730974:1-2184 [pilon] Processing NODE_13366_length_243_cov_19.680328:1-243 [pilon] NODE_10620_length_300_cov_22.435754:1-300 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 83, Coverage: 12, minDepth: 5 [pilon] Confirmed 213 of 300 bases (71.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10620_length_300_cov_22.435754:1-300 [pilon] Processing NODE_11585_length_261_cov_14.185714:1-261 [pilon] NODE_14012_length_243_cov_14.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14012_length_243_cov_14.122951:1-243 [pilon] Processing NODE_14354_length_243_cov_11.426230:1-243 [pilon] NODE_11932_length_248_cov_31.763780:1-248 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 85, Coverage: 4, minDepth: 5 [pilon] Confirmed 127 of 248 bases (51.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11932_length_248_cov_31.763780:1-248 [pilon] Processing NODE_2579_length_950_cov_44.369119:1-950 [pilon] NODE_12602_length_243_cov_27.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12602_length_243_cov_27.557377:1-243 [pilon] Processing NODE_5057_length_614_cov_15.397566:1-614 [pilon] NODE_4905_length_626_cov_3.708911:1-626 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 45, Coverage: 9, minDepth: 5 [pilon] Confirmed 343 of 626 bases (54.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4905_length_626_cov_3.708911:1-626 [pilon] Processing NODE_8161_length_410_cov_59.833910:1-410 [pilon] NODE_10713_length_297_cov_17.147727:1-297 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10713_length_297_cov_17.147727:1-297 [pilon] Processing NODE_753_length_1666_cov_24.038188:1-1666 [pilon] NODE_5177_length_603_cov_21.746888:1-603 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 238, Coverage: 39, minDepth: 10 [pilon] Confirmed 510 of 603 bases (84.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5177_length_603_cov_21.746888:1-603 [pilon] Processing NODE_5642_length_567_cov_37.347534:1-567 [pilon] NODE_4691_length_644_cov_2.562141:1-644 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 40, Coverage: 8, minDepth: 5 [pilon] Confirmed 428 of 644 bases (66.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4691_length_644_cov_2.562141:1-644 [pilon] Processing NODE_3561_length_775_cov_27.974006:1-775 [pilon] NODE_11136_length_279_cov_5.651899:1-279 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 29, Coverage: 3, minDepth: 5 [pilon] Confirmed 103 of 279 bases (36.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11136_length_279_cov_5.651899:1-279 [pilon] Processing NODE_4401_length_671_cov_17.463636:1-671 [pilon] NODE_5607_length_570_cov_16.351893:1-570 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 160, Coverage: 21, minDepth: 5 [pilon] Confirmed 434 of 570 bases (76.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5607_length_570_cov_16.351893:1-570 [pilon] Processing NODE_7319_length_452_cov_29.459215:1-452 [pilon] NODE_9551_length_344_cov_14.820628:1-344 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 77, Coverage: 9, minDepth: 5 [pilon] Confirmed 253 of 344 bases (73.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9551_length_344_cov_14.820628:1-344 [pilon] Processing NODE_7681_length_433_cov_32.173077:1-433 [pilon] NODE_13208_length_243_cov_20.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13208_length_243_cov_20.991803:1-243 [pilon] Processing NODE_9256_length_355_cov_21.910256:1-355 [pilon] NODE_3767_length_745_cov_12.693910:1-745 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 177, Coverage: 29, minDepth: 7 [pilon] Confirmed 635 of 745 bases (85.23%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3767_length_745_cov_12.693910:1-745 [pilon] Processing NODE_6464_length_506_cov_5.641558:1-506 [pilon] NODE_11316_length_270_cov_32.651007:1-270 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 111, Coverage: 10, minDepth: 5 [pilon] Confirmed 229 of 270 bases (84.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11316_length_270_cov_32.651007:1-270 [pilon] Processing NODE_8151_length_411_cov_8.537931:1-411 [pilon] NODE_11991_length_246_cov_21.680000:1-246 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 188 of 246 bases (76.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11991_length_246_cov_21.680000:1-246 [pilon] Processing NODE_10876_length_289_cov_8.922619:1-289 [pilon] NODE_5443_length_581_cov_5.771739:1-581 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 67, Coverage: 4, minDepth: 5 [pilon] Confirmed 189 of 581 bases (32.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5443_length_581_cov_5.771739:1-581 [pilon] Processing NODE_747_length_1670_cov_4.363460:1-1670 [pilon] NODE_3960_length_720_cov_3.671119:1-720 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 65, Coverage: 8, minDepth: 5 [pilon] Confirmed 442 of 720 bases (61.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3960_length_720_cov_3.671119:1-720 [pilon] NODE_3806_length_740_cov_2.093700:1-740 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 422 of 740 bases (57.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3806_length_740_cov_2.093700:1-740 [pilon] Processing NODE_7791_length_428_cov_8.104235:1-428 [pilon] Processing NODE_5436_length_582_cov_0.861171:1-582 [pilon] NODE_4713_length_642_cov_18.166987:1-642 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 202, Coverage: 25, minDepth: 6 [pilon] Confirmed 485 of 642 bases (75.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4713_length_642_cov_18.166987:1-642 [pilon] Processing NODE_5259_length_596_cov_11.056842:1-596 [pilon] NODE_9592_length_342_cov_15.588235:1-342 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 84, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 342 bases (38.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9592_length_342_cov_15.588235:1-342 [pilon] Processing NODE_9641_length_339_cov_44.665138:1-339 [pilon] NODE_5384_length_585_cov_25.028017:1-585 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 273, Coverage: 36, minDepth: 9 [pilon] Confirmed 474 of 585 bases (81.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5384_length_585_cov_25.028017:1-585 [pilon] Processing NODE_11402_length_267_cov_18.410959:1-267 [pilon] NODE_15054_length_240_cov_12.630252:1-240 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 21, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 240 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15054_length_240_cov_12.630252:1-240 [pilon] Processing NODE_4798_length_635_cov_1.285992:1-635 [pilon] NODE_7788_length_428_cov_14.205212:1-428 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 101, Coverage: 9, minDepth: 5 [pilon] Confirmed 265 of 428 bases (61.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7788_length_428_cov_14.205212:1-428 [pilon] Processing NODE_572_length_1834_cov_2.455925:1-1834 [pilon] NODE_15069_length_237_cov_25.681034:1-237 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 61, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 237 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15069_length_237_cov_25.681034:1-237 [pilon] Processing NODE_11398_length_267_cov_19.972603:1-267 [pilon] NODE_13141_length_243_cov_21.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13141_length_243_cov_21.606557:1-243 [pilon] Processing NODE_14538_length_243_cov_9.983607:1-243 [pilon] NODE_4023_length_713_cov_16.523649:1-713 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 210, Coverage: 28, minDepth: 7 [pilon] Confirmed 660 of 713 bases (92.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4023_length_713_cov_16.523649:1-713 [pilon] Processing NODE_1297_length_1342_cov_1.731368:1-1342 [pilon] NODE_753_length_1666_cov_24.038188:1-1666 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 971, Coverage: 39, minDepth: 10 [pilon] Confirmed 1448 of 1666 bases (86.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_753_length_1666_cov_24.038188:1-1666 [pilon] Processing NODE_4814_length_633_cov_24.183594:1-633 [pilon] NODE_4782_length_636_cov_27.386408:1-636 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 346, Coverage: 39, minDepth: 10 [pilon] Confirmed 366 of 636 bases (57.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4782_length_636_cov_27.386408:1-636 [pilon] Processing NODE_8985_length_367_cov_19.686992:1-367 [pilon] NODE_7319_length_452_cov_29.459215:1-452 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 243, Coverage: 35, minDepth: 9 [pilon] Confirmed 378 of 452 bases (83.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7319_length_452_cov_29.459215:1-452 [pilon] Processing NODE_12669_length_243_cov_26.565574:1-243 [pilon] NODE_507_length_1908_cov_24.574706:1-1908 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 1017, Coverage: 58, minDepth: 15 [pilon] Confirmed 1719 of 1908 bases (90.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_507_length_1908_cov_24.574706:1-1908 [pilon] Processing NODE_10962_length_285_cov_21.073171:1-285 [pilon] NODE_14354_length_243_cov_11.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14354_length_243_cov_11.426230:1-243 [pilon] NODE_13366_length_243_cov_19.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_12529_length_243_cov_28.655738:1-243 [pilon] Finished processing NODE_13366_length_243_cov_19.680328:1-243 [pilon] Processing NODE_9388_length_351_cov_12.673913:1-351 [pilon] NODE_11585_length_261_cov_14.185714:1-261 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 49, Coverage: 2, minDepth: 5 [pilon] Confirmed 69 of 261 bases (26.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11585_length_261_cov_14.185714:1-261 [pilon] Processing NODE_8527_length_392_cov_51.040590:1-392 [pilon] NODE_5642_length_567_cov_37.347534:1-567 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 396, Coverage: 70, minDepth: 18 [pilon] Confirmed 487 of 567 bases (85.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5642_length_567_cov_37.347534:1-567 [pilon] Processing NODE_958_length_1521_cov_1.430714:1-1521 [pilon] NODE_5057_length_614_cov_15.397566:1-614 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 169, Coverage: 22, minDepth: 6 [pilon] Confirmed 426 of 614 bases (69.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5057_length_614_cov_15.397566:1-614 [pilon] Processing NODE_13811_length_243_cov_15.557377:1-243 [pilon] NODE_2579_length_950_cov_44.369119:1-950 log: [pilon] frags shovill.bam: coverage 96 [pilon] Total Reads: 828, Coverage: 96, minDepth: 24 [pilon] Confirmed 787 of 950 bases (82.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2579_length_950_cov_44.369119:1-950 [pilon] Processing NODE_5279_length_594_cov_20.033827:1-594 [pilon] NODE_8161_length_410_cov_59.833910:1-410 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 410, Coverage: 75, minDepth: 19 [pilon] Confirmed 354 of 410 bases (86.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8161_length_410_cov_59.833910:1-410 [pilon] Processing NODE_346_length_2130_cov_15.836735:1-2130 [pilon] NODE_4401_length_671_cov_17.463636:1-671 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 226, Coverage: 25, minDepth: 6 [pilon] Confirmed 564 of 671 bases (84.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4401_length_671_cov_17.463636:1-671 [pilon] Processing NODE_14163_length_243_cov_12.975410:1-243 [pilon] NODE_3561_length_775_cov_27.974006:1-775 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 495, Coverage: 37, minDepth: 9 [pilon] Confirmed 539 of 775 bases (69.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3561_length_775_cov_27.974006:1-775 [pilon] Processing NODE_6784_length_484_cov_2.903581:1-484 [pilon] NODE_7681_length_433_cov_32.173077:1-433 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 227, Coverage: 46, minDepth: 12 [pilon] Confirmed 361 of 433 bases (83.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7681_length_433_cov_32.173077:1-433 [pilon] Processing NODE_3046_length_864_cov_18.796770:1-864 [pilon] NODE_6464_length_506_cov_5.641558:1-506 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 66, Coverage: 7, minDepth: 5 [pilon] Confirmed 240 of 506 bases (47.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6464_length_506_cov_5.641558:1-506 [pilon] Processing NODE_13127_length_243_cov_21.688525:1-243 [pilon] NODE_8151_length_411_cov_8.537931:1-411 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 292 of 411 bases (71.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8151_length_411_cov_8.537931:1-411 [pilon] Processing NODE_11396_length_267_cov_20.554795:1-267 [pilon] NODE_10876_length_289_cov_8.922619:1-289 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 34, Coverage: 4, minDepth: 5 [pilon] Confirmed 139 of 289 bases (48.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10876_length_289_cov_8.922619:1-289 [pilon] Processing NODE_3425_length_795_cov_15.140950:1-795 [pilon] NODE_9256_length_355_cov_21.910256:1-355 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 99, Coverage: 13, minDepth: 5 [pilon] Confirmed 244 of 355 bases (68.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9256_length_355_cov_21.910256:1-355 [pilon] Processing NODE_9976_length_327_cov_12.407767:1-327 [pilon] NODE_747_length_1670_cov_4.363460:1-1670 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 173, Coverage: 13, minDepth: 5 [pilon] Confirmed 1434 of 1670 bases (85.87%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_747_length_1670_cov_4.363460:1-1670 [pilon] Processing NODE_4200_length_694_cov_2.523560:1-694 [pilon] NODE_7791_length_428_cov_8.104235:1-428 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 81, Coverage: 8, minDepth: 5 [pilon] Confirmed 299 of 428 bases (69.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7791_length_428_cov_8.104235:1-428 [pilon] Processing NODE_13510_length_243_cov_18.303279:1-243 [pilon] NODE_5259_length_596_cov_11.056842:1-596 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 114, Coverage: 17, minDepth: 5 [pilon] Confirmed 384 of 596 bases (64.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5259_length_596_cov_11.056842:1-596 [pilon] Processing NODE_9431_length_348_cov_29.383260:1-348 [pilon] NODE_5436_length_582_cov_0.861171:1-582 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 27 of 582 bases (4.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5436_length_582_cov_0.861171:1-582 [pilon] Processing NODE_13275_length_243_cov_20.393443:1-243 [pilon] NODE_11402_length_267_cov_18.410959:1-267 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 160 of 267 bases (59.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11402_length_267_cov_18.410959:1-267 [pilon] Processing NODE_349_length_2127_cov_16.463609:1-2127 [pilon] NODE_9641_length_339_cov_44.665138:1-339 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 227, Coverage: 34, minDepth: 9 [pilon] Confirmed 299 of 339 bases (88.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9641_length_339_cov_44.665138:1-339 [pilon] Processing NODE_5080_length_612_cov_0.804481:1-612 [pilon] NODE_12669_length_243_cov_26.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12669_length_243_cov_26.565574:1-243 [pilon] Processing NODE_10781_length_294_cov_16.734104:1-294 [pilon] NODE_4814_length_633_cov_24.183594:1-633 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 317, Coverage: 29, minDepth: 7 [pilon] Confirmed 579 of 633 bases (91.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4814_length_633_cov_24.183594:1-633 [pilon] Processing NODE_8906_length_371_cov_40.612000:1-371 [pilon] NODE_11398_length_267_cov_19.972603:1-267 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 59, Coverage: 3, minDepth: 5 [pilon] Confirmed 102 of 267 bases (38.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11398_length_267_cov_19.972603:1-267 [pilon] Processing NODE_9780_length_335_cov_26.883178:1-335 [pilon] NODE_4798_length_635_cov_1.285992:1-635 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 17, Coverage: 3, minDepth: 5 [pilon] Confirmed 222 of 635 bases (34.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4798_length_635_cov_1.285992:1-635 [pilon] NODE_958_length_1521_cov_1.430714:1-1521 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 62, Coverage: 5, minDepth: 5 [pilon] Confirmed 805 of 1521 bases (52.93%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_958_length_1521_cov_1.430714:1-1521 [pilon] Processing NODE_960_length_1519_cov_1.987124:1-1519 [pilon] Processing NODE_2322_length_1005_cov_27.458145:1-1005 [pilon] NODE_572_length_1834_cov_2.455925:1-1834 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 109, Coverage: 8, minDepth: 5 [pilon] Confirmed 1237 of 1834 bases (67.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_572_length_1834_cov_2.455925:1-1834 [pilon] Processing NODE_4950_length_622_cov_42.676647:1-622 [pilon] NODE_1297_length_1342_cov_1.731368:1-1342 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 79, Coverage: 7, minDepth: 5 [pilon] Confirmed 968 of 1342 bases (72.13%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1297_length_1342_cov_1.731368:1-1342 [pilon] Processing NODE_7954_length_420_cov_14.896321:1-420 [pilon] NODE_14538_length_243_cov_9.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14538_length_243_cov_9.983607:1-243 [pilon] Processing NODE_5036_length_616_cov_15.692929:1-616 [pilon] NODE_10962_length_285_cov_21.073171:1-285 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 76, Coverage: 3, minDepth: 5 [pilon] Confirmed 109 of 285 bases (38.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10962_length_285_cov_21.073171:1-285 [pilon] Processing NODE_9288_length_354_cov_18.510730:1-354 [pilon] NODE_9388_length_351_cov_12.673913:1-351 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 91, Coverage: 9, minDepth: 5 [pilon] Confirmed 223 of 351 bases (63.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_8985_length_367_cov_19.686992:1-367 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 115, Coverage: 10, minDepth: 5 [pilon] Confirmed 224 of 367 bases (61.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8985_length_367_cov_19.686992:1-367 [pilon] Finished processing NODE_9388_length_351_cov_12.673913:1-351 [pilon] Processing NODE_3737_length_750_cov_5.071542:1-750 [pilon] Processing NODE_9372_length_351_cov_19.930435:1-351 [pilon] NODE_12529_length_243_cov_28.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12529_length_243_cov_28.655738:1-243 [pilon] Processing NODE_10572_length_302_cov_24.740331:1-302 [pilon] NODE_8527_length_392_cov_51.040590:1-392 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 331, Coverage: 46, minDepth: 12 [pilon] Confirmed 327 of 392 bases (83.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8527_length_392_cov_51.040590:1-392 [pilon] Processing NODE_3637_length_763_cov_26.528037:1-763 [pilon] NODE_5279_length_594_cov_20.033827:1-594 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 237, Coverage: 27, minDepth: 7 [pilon] Confirmed 535 of 594 bases (90.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5279_length_594_cov_20.033827:1-594 [pilon] Processing NODE_5389_length_585_cov_4.441810:1-585 [pilon] NODE_13811_length_243_cov_15.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13811_length_243_cov_15.557377:1-243 [pilon] Processing NODE_14978_length_243_cov_5.721311:1-243 [pilon] NODE_346_length_2130_cov_15.836735:1-2130 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 750, Coverage: 38, minDepth: 10 [pilon] Confirmed 1983 of 2130 bases (93.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_346_length_2130_cov_15.836735:1-2130 [pilon] Processing NODE_10924_length_288_cov_8.652695:1-288 [pilon] NODE_14163_length_243_cov_12.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14163_length_243_cov_12.975410:1-243 [pilon] Processing NODE_718_length_1690_cov_2.801147:1-1690 [pilon] NODE_3046_length_864_cov_18.796770:1-864 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 353, Coverage: 19, minDepth: 5 [pilon] Confirmed 644 of 864 bases (74.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3046_length_864_cov_18.796770:1-864 [pilon] Processing NODE_11872_length_250_cov_8.837209:1-250 [pilon] NODE_13127_length_243_cov_21.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13127_length_243_cov_21.688525:1-243 [pilon] Processing NODE_11265_length_273_cov_16.967105:1-273 [pilon] NODE_4200_length_694_cov_2.523560:1-694 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 45, Coverage: 8, minDepth: 5 [pilon] Confirmed 375 of 694 bases (54.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4200_length_694_cov_2.523560:1-694 [pilon] Processing NODE_4276_length_684_cov_8.609236:1-684 [pilon] NODE_11396_length_267_cov_20.554795:1-267 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 63, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 267 bases (48.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11396_length_267_cov_20.554795:1-267 [pilon] Processing NODE_4260_length_687_cov_6.309187:1-687 [pilon] NODE_6784_length_484_cov_2.903581:1-484 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 302 of 484 bases (62.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6784_length_484_cov_2.903581:1-484 [pilon] Processing NODE_8707_length_382_cov_11.578544:1-382 [pilon] NODE_9976_length_327_cov_12.407767:1-327 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 51, Coverage: 4, minDepth: 5 [pilon] Confirmed 162 of 327 bases (49.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9976_length_327_cov_12.407767:1-327 [pilon] Processing NODE_9569_length_342_cov_32.321267:1-342 [pilon] NODE_13510_length_243_cov_18.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13510_length_243_cov_18.303279:1-243 [pilon] Processing NODE_13667_length_243_cov_16.811475:1-243 [pilon] NODE_13275_length_243_cov_20.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13275_length_243_cov_20.393443:1-243 [pilon] Processing NODE_13789_length_243_cov_15.778689:1-243 [pilon] NODE_3425_length_795_cov_15.140950:1-795 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 241, Coverage: 28, minDepth: 7 [pilon] Confirmed 508 of 795 bases (63.90%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3425_length_795_cov_15.140950:1-795 [pilon] Processing NODE_8903_length_372_cov_9.167331:1-372 [pilon] NODE_9431_length_348_cov_29.383260:1-348 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 145, Coverage: 4, minDepth: 5 [pilon] Confirmed 134 of 348 bases (38.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9431_length_348_cov_29.383260:1-348 [pilon] Processing NODE_7180_length_461_cov_1.120588:1-461 [pilon] NODE_349_length_2127_cov_16.463609:1-2127 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 795, Coverage: 43, minDepth: 11 [pilon] Confirmed 1720 of 2127 bases (80.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_349_length_2127_cov_16.463609:1-2127 [pilon] Processing NODE_8325_length_403_cov_13.528369:1-403 [pilon] NODE_10781_length_294_cov_16.734104:1-294 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 58, Coverage: 4, minDepth: 5 [pilon] Confirmed 131 of 294 bases (44.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10781_length_294_cov_16.734104:1-294 [pilon] Processing NODE_1377_length_1307_cov_19.155143:1-1307 [pilon] NODE_5080_length_612_cov_0.804481:1-612 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 51 of 612 bases (8.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5080_length_612_cov_0.804481:1-612 [pilon] Processing NODE_9408_length_350_cov_12.895197:1-350 [pilon] NODE_8906_length_371_cov_40.612000:1-371 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 239, Coverage: 21, minDepth: 5 [pilon] Confirmed 300 of 371 bases (80.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8906_length_371_cov_40.612000:1-371 [pilon] Processing NODE_13734_length_243_cov_16.155738:1-243 [pilon] NODE_4950_length_622_cov_42.676647:1-622 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 502, Coverage: 40, minDepth: 10 [pilon] Confirmed 383 of 622 bases (61.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4950_length_622_cov_42.676647:1-622 [pilon] Processing NODE_5965_length_544_cov_0.917258:1-544 [pilon] NODE_9780_length_335_cov_26.883178:1-335 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 136, Coverage: 19, minDepth: 5 [pilon] Confirmed 283 of 335 bases (84.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9780_length_335_cov_26.883178:1-335 [pilon] Processing NODE_11595_length_261_cov_6.285714:1-261 [pilon] NODE_2322_length_1005_cov_27.458145:1-1005 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 575, Coverage: 59, minDepth: 15 [pilon] Confirmed 568 of 1005 bases (56.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2322_length_1005_cov_27.458145:1-1005 [pilon] Processing NODE_8173_length_410_cov_0.975779:1-410 [pilon] NODE_7954_length_420_cov_14.896321:1-420 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 92, Coverage: 14, minDepth: 5 [pilon] Confirmed 300 of 420 bases (71.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7954_length_420_cov_14.896321:1-420 [pilon] Processing NODE_12309_length_243_cov_32.959016:1-243 [pilon] NODE_5036_length_616_cov_15.692929:1-616 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 202, Coverage: 34, minDepth: 9 [pilon] Confirmed 449 of 616 bases (72.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5036_length_616_cov_15.692929:1-616 [pilon] Processing NODE_14977_length_243_cov_5.721311:1-243 [pilon] NODE_3737_length_750_cov_5.071542:1-750 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 76, Coverage: 12, minDepth: 5 [pilon] Confirmed 589 of 750 bases (78.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3737_length_750_cov_5.071542:1-750 [pilon] Processing NODE_15035_length_243_cov_5.040984:1-243 [pilon] NODE_9372_length_351_cov_19.930435:1-351 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 100, Coverage: 13, minDepth: 5 [pilon] Confirmed 236 of 351 bases (67.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9372_length_351_cov_19.930435:1-351 [pilon] Processing NODE_6719_length_489_cov_11.809783:1-489 [pilon] NODE_9288_length_354_cov_18.510730:1-354 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 95, Coverage: 2, minDepth: 5 [pilon] Confirmed 123 of 354 bases (34.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9288_length_354_cov_18.510730:1-354 [pilon] Processing NODE_13639_length_243_cov_17.139344:1-243 [pilon] NODE_960_length_1519_cov_1.987124:1-1519 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 90, Coverage: 8, minDepth: 5 [pilon] Confirmed 958 of 1519 bases (63.07%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_960_length_1519_cov_1.987124:1-1519 [pilon] Processing NODE_317_length_2203_cov_8.176753:1-2203 [pilon] NODE_14978_length_243_cov_5.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14978_length_243_cov_5.721311:1-243 [pilon] Processing NODE_10398_length_309_cov_12.691489:1-309 [pilon] NODE_10572_length_302_cov_24.740331:1-302 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 93, Coverage: 12, minDepth: 5 [pilon] Confirmed 189 of 302 bases (62.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10572_length_302_cov_24.740331:1-302 [pilon] Processing NODE_10902_length_288_cov_19.646707:1-288 [pilon] NODE_3637_length_763_cov_26.528037:1-763 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 436, Coverage: 43, minDepth: 11 [pilon] Confirmed 582 of 763 bases (76.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3637_length_763_cov_26.528037:1-763 [pilon] Processing NODE_3719_length_752_cov_13.828843:1-752 [pilon] NODE_5389_length_585_cov_4.441810:1-585 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 58, Coverage: 11, minDepth: 5 [pilon] Confirmed 391 of 585 bases (66.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5389_length_585_cov_4.441810:1-585 [pilon] Processing NODE_5087_length_611_cov_20.216327:1-611 [pilon] NODE_4276_length_684_cov_8.609236:1-684 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 117, Coverage: 8, minDepth: 5 [pilon] Confirmed 481 of 684 bases (70.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4276_length_684_cov_8.609236:1-684 [pilon] Processing NODE_1782_length_1153_cov_1.172481:1-1153 [pilon] NODE_10924_length_288_cov_8.652695:1-288 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10924_length_288_cov_8.652695:1-288 [pilon] Processing NODE_6711_length_489_cov_30.119565:1-489 [pilon] NODE_11265_length_273_cov_16.967105:1-273 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 69, Coverage: 5, minDepth: 5 [pilon] Confirmed 141 of 273 bases (51.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11265_length_273_cov_16.967105:1-273 [pilon] Processing NODE_5702_length_563_cov_31.780543:1-563 [pilon] NODE_718_length_1690_cov_2.801147:1-1690 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 109, Coverage: 8, minDepth: 5 [pilon] Confirmed 907 of 1690 bases (53.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_718_length_1690_cov_2.801147:1-1690 [pilon] Processing NODE_6410_length_510_cov_2.838046:1-510 [pilon] NODE_11872_length_250_cov_8.837209:1-250 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 27, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 250 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11872_length_250_cov_8.837209:1-250 [pilon] Processing NODE_3169_length_837_cov_34.117318:1-837 [pilon] NODE_4260_length_687_cov_6.309187:1-687 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 80, Coverage: 15, minDepth: 5 [pilon] Confirmed 528 of 687 bases (76.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4260_length_687_cov_6.309187:1-687 [pilon] Processing NODE_10329_length_312_cov_19.335079:1-312 [pilon] NODE_13789_length_243_cov_15.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13789_length_243_cov_15.778689:1-243 [pilon] Processing NODE_1319_length_1333_cov_1.574257:1-1333 [pilon] NODE_9569_length_342_cov_32.321267:1-342 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 167, Coverage: 25, minDepth: 6 [pilon] Confirmed 266 of 342 bases (77.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9569_length_342_cov_32.321267:1-342 [pilon] Processing NODE_720_length_1688_cov_1.809190:1-1688 [pilon] NODE_13667_length_243_cov_16.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13667_length_243_cov_16.811475:1-243 [pilon] Processing NODE_5750_length_560_cov_0.785877:1-560 [pilon] NODE_8707_length_382_cov_11.578544:1-382 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 69, Coverage: 4, minDepth: 5 [pilon] Confirmed 137 of 382 bases (35.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8707_length_382_cov_11.578544:1-382 [pilon] Processing NODE_356_length_2118_cov_8.535804:1-2118 [pilon] NODE_7180_length_461_cov_1.120588:1-461 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 23, Coverage: 6, minDepth: 5 [pilon] Confirmed 303 of 461 bases (65.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7180_length_461_cov_1.120588:1-461 [pilon] Processing NODE_14518_length_243_cov_10.163934:1-243 [pilon] NODE_8903_length_372_cov_9.167331:1-372 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 48, Coverage: 4, minDepth: 5 [pilon] Confirmed 174 of 372 bases (46.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8903_length_372_cov_9.167331:1-372 [pilon] Processing NODE_8664_length_384_cov_16.357414:1-384 [pilon] NODE_9408_length_350_cov_12.895197:1-350 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 68, Coverage: 12, minDepth: 5 [pilon] Confirmed 249 of 350 bases (71.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9408_length_350_cov_12.895197:1-350 [pilon] Processing NODE_7261_length_456_cov_27.379104:1-456 [pilon] NODE_8325_length_403_cov_13.528369:1-403 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 95, Coverage: 18, minDepth: 5 [pilon] Confirmed 326 of 403 bases (80.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8325_length_403_cov_13.528369:1-403 [pilon] Processing NODE_459_length_1965_cov_13.133406:1-1965 [pilon] NODE_5965_length_544_cov_0.917258:1-544 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 22 of 544 bases (4.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5965_length_544_cov_0.917258:1-544 [pilon] Processing NODE_14180_length_243_cov_12.770492:1-243 [pilon] NODE_1377_length_1307_cov_19.155143:1-1307 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 568, Coverage: 48, minDepth: 12 [pilon] Confirmed 803 of 1307 bases (61.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1377_length_1307_cov_19.155143:1-1307 [pilon] NODE_13734_length_243_cov_16.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_14940_length_243_cov_6.262295:1-243 [pilon] Finished processing NODE_13734_length_243_cov_16.155738:1-243 [pilon] Processing NODE_10427_length_307_cov_23.284946:1-307 [pilon] NODE_11595_length_261_cov_6.285714:1-261 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 20, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11595_length_261_cov_6.285714:1-261 [pilon] Processing NODE_11546_length_262_cov_15.815603:1-262 [pilon] NODE_10398_length_309_cov_12.691489:1-309 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 58, Coverage: 3, minDepth: 5 [pilon] Confirmed 100 of 309 bases (32.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10398_length_309_cov_12.691489:1-309 [pilon] Processing NODE_4287_length_683_cov_2.852313:1-683 [pilon] NODE_317_length_2203_cov_8.176753:1-2203 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 425, Coverage: 23, minDepth: 6 [pilon] Confirmed 1679 of 2203 bases (76.21%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_317_length_2203_cov_8.176753:1-2203 [pilon] Processing NODE_11066_length_280_cov_26.943396:1-280 [pilon] NODE_12309_length_243_cov_32.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12309_length_243_cov_32.959016:1-243 [pilon] Processing NODE_2911_length_890_cov_26.201560:1-890 [pilon] NODE_8173_length_410_cov_0.975779:1-410 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 410 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8173_length_410_cov_0.975779:1-410 [pilon] Processing NODE_13464_length_243_cov_18.745902:1-243 [pilon] NODE_1782_length_1153_cov_1.172481:1-1153 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 37, Coverage: 4, minDepth: 5 [pilon] Confirmed 440 of 1153 bases (38.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1782_length_1153_cov_1.172481:1-1153 [pilon] Processing NODE_5299_length_593_cov_0.955508:1-593 [pilon] NODE_14977_length_243_cov_5.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14977_length_243_cov_5.721311:1-243 [pilon] Processing NODE_12804_length_243_cov_25.000000:1-243 [pilon] NODE_15035_length_243_cov_5.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15035_length_243_cov_5.040984:1-243 [pilon] Processing NODE_8818_length_375_cov_62.724409:1-375 [pilon] NODE_13639_length_243_cov_17.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13639_length_243_cov_17.139344:1-243 [pilon] Processing NODE_873_length_1580_cov_18.647019:1-1580 [pilon] NODE_6719_length_489_cov_11.809783:1-489 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 93, Coverage: 12, minDepth: 5 [pilon] Confirmed 330 of 489 bases (67.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6719_length_489_cov_11.809783:1-489 [pilon] Processing NODE_13256_length_243_cov_20.565574:1-243 [pilon] NODE_10902_length_288_cov_19.646707:1-288 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 72, Coverage: 3, minDepth: 5 [pilon] Confirmed 74 of 288 bases (25.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10902_length_288_cov_19.646707:1-288 [pilon] Processing NODE_5252_length_597_cov_0.657563:1-597 [pilon] NODE_3719_length_752_cov_13.828843:1-752 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 184, Coverage: 27, minDepth: 7 [pilon] Confirmed 665 of 752 bases (88.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3719_length_752_cov_13.828843:1-752 [pilon] Processing NODE_12675_length_243_cov_26.500000:1-243 [pilon] NODE_5087_length_611_cov_20.216327:1-611 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 226, Coverage: 32, minDepth: 8 [pilon] Confirmed 453 of 611 bases (74.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5087_length_611_cov_20.216327:1-611 [pilon] Processing NODE_8393_length_400_cov_12.311828:1-400 [pilon] NODE_6711_length_489_cov_30.119565:1-489 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 249, Coverage: 40, minDepth: 10 [pilon] Confirmed 399 of 489 bases (81.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6711_length_489_cov_30.119565:1-489 [pilon] Processing NODE_10844_length_291_cov_6.447059:1-291 [pilon] NODE_5702_length_563_cov_31.780543:1-563 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 367, Coverage: 33, minDepth: 8 [pilon] Confirmed 411 of 563 bases (73.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5702_length_563_cov_31.780543:1-563 [pilon] Processing NODE_3249_length_824_cov_14.984353:1-824 [pilon] NODE_6410_length_510_cov_2.838046:1-510 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 387 of 510 bases (75.88%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6410_length_510_cov_2.838046:1-510 [pilon] Processing NODE_15047_length_241_cov_13.191667:1-241 [pilon] NODE_10329_length_312_cov_19.335079:1-312 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 90, Coverage: 12, minDepth: 5 [pilon] Confirmed 262 of 312 bases (83.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10329_length_312_cov_19.335079:1-312 [pilon] Processing NODE_11009_length_284_cov_14.441718:1-284 [pilon] NODE_11066_length_280_cov_26.943396:1-280 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 97, Coverage: 7, minDepth: 5 [pilon] Confirmed 211 of 280 bases (75.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11066_length_280_cov_26.943396:1-280 [pilon] Processing NODE_15086_length_230_cov_64.174312:1-230 [pilon] NODE_4287_length_683_cov_2.852313:1-683 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 41, Coverage: 8, minDepth: 5 [pilon] Confirmed 444 of 683 bases (65.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4287_length_683_cov_2.852313:1-683 [pilon] Processing NODE_5931_length_546_cov_0.722353:1-546 [pilon] NODE_3169_length_837_cov_34.117318:1-837 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 543, Coverage: 60, minDepth: 15 [pilon] Confirmed 763 of 837 bases (91.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3169_length_837_cov_34.117318:1-837 [pilon] Processing NODE_7780_length_429_cov_0.720779:1-429 [pilon] NODE_720_length_1688_cov_1.809190:1-1688 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 88, Coverage: 6, minDepth: 5 [pilon] Confirmed 804 of 1688 bases (47.63%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_720_length_1688_cov_1.809190:1-1688 [pilon] Processing NODE_14685_length_243_cov_8.704918:1-243 [pilon] NODE_5299_length_593_cov_0.955508:1-593 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 6 of 593 bases (1.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5299_length_593_cov_0.955508:1-593 [pilon] Processing NODE_10945_length_286_cov_13.351515:1-286 [pilon] NODE_5750_length_560_cov_0.785877:1-560 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 33 of 560 bases (5.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5750_length_560_cov_0.785877:1-560 [pilon] Processing NODE_12371_length_243_cov_31.680328:1-243 [pilon] NODE_14518_length_243_cov_10.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14518_length_243_cov_10.163934:1-243 [pilon] Processing NODE_12086_length_244_cov_16.821138:1-244 [pilon] NODE_1319_length_1333_cov_1.574257:1-1333 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 61, Coverage: 6, minDepth: 5 [pilon] Confirmed 772 of 1333 bases (57.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1319_length_1333_cov_1.574257:1-1333 [pilon] Processing NODE_7021_length_470_cov_21.865330:1-470 [pilon] NODE_14180_length_243_cov_12.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14180_length_243_cov_12.770492:1-243 [pilon] Processing NODE_12731_length_243_cov_25.811475:1-243 [pilon] NODE_8664_length_384_cov_16.357414:1-384 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 101, Coverage: 14, minDepth: 5 [pilon] Confirmed 240 of 384 bases (62.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8664_length_384_cov_16.357414:1-384 [pilon] Processing NODE_13952_length_243_cov_14.500000:1-243 [pilon] NODE_10427_length_307_cov_23.284946:1-307 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 104, Coverage: 21, minDepth: 5 [pilon] Confirmed 275 of 307 bases (89.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10427_length_307_cov_23.284946:1-307 [pilon] Processing NODE_7550_length_441_cov_11.012500:1-441 [pilon] NODE_356_length_2118_cov_8.535804:1-2118 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 445, Coverage: 25, minDepth: 6 [pilon] Confirmed 1877 of 2118 bases (88.62%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_356_length_2118_cov_8.535804:1-2118 [pilon] Processing NODE_10035_length_324_cov_15.620690:1-324 [pilon] NODE_7261_length_456_cov_27.379104:1-456 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 205, Coverage: 21, minDepth: 5 [pilon] Confirmed 310 of 456 bases (67.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7261_length_456_cov_27.379104:1-456 [pilon] Processing NODE_8970_length_368_cov_13.089069:1-368 [pilon] NODE_14940_length_243_cov_6.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14940_length_243_cov_6.262295:1-243 [pilon] Processing NODE_266_length_2298_cov_17.119890:1-2298 [pilon] NODE_459_length_1965_cov_13.133406:1-1965 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 594, Coverage: 39, minDepth: 10 [pilon] Confirmed 1581 of 1965 bases (80.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_459_length_1965_cov_13.133406:1-1965 [pilon] Processing NODE_10901_length_288_cov_19.646707:1-288 [pilon] NODE_11546_length_262_cov_15.815603:1-262 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 262 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11546_length_262_cov_15.815603:1-262 [pilon] Processing NODE_539_length_1867_cov_5.018328:1-1867 [pilon] NODE_13464_length_243_cov_18.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13464_length_243_cov_18.745902:1-243 [pilon] Processing NODE_3015_length_870_cov_27.260347:1-870 [pilon] NODE_8818_length_375_cov_62.724409:1-375 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 357, Coverage: 62, minDepth: 16 [pilon] Confirmed 332 of 375 bases (88.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8818_length_375_cov_62.724409:1-375 [pilon] Processing NODE_10299_length_313_cov_17.921875:1-313 [pilon] NODE_2911_length_890_cov_26.201560:1-890 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 496, Coverage: 54, minDepth: 14 [pilon] Confirmed 777 of 890 bases (87.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2911_length_890_cov_26.201560:1-890 [pilon] Processing NODE_9970_length_327_cov_15.393204:1-327 [pilon] NODE_12804_length_243_cov_25.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12804_length_243_cov_25.000000:1-243 [pilon] Processing NODE_5328_length_590_cov_27.155650:1-590 [pilon] NODE_13256_length_243_cov_20.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13256_length_243_cov_20.565574:1-243 [pilon] Processing NODE_7952_length_420_cov_16.782609:1-420 [pilon] NODE_12675_length_243_cov_26.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12675_length_243_cov_26.500000:1-243 [pilon] Processing NODE_14670_length_243_cov_8.836066:1-243 [pilon] NODE_5252_length_597_cov_0.657563:1-597 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 597 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5252_length_597_cov_0.657563:1-597 [pilon] Processing NODE_5500_length_577_cov_5.267544:1-577 [pilon] NODE_873_length_1580_cov_18.647019:1-1580 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 615, Coverage: 40, minDepth: 10 [pilon] Confirmed 1227 of 1580 bases (77.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_873_length_1580_cov_18.647019:1-1580 [pilon] Processing NODE_1385_length_1302_cov_21.991533:1-1302 [pilon] NODE_5931_length_546_cov_0.722353:1-546 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 546 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5931_length_546_cov_0.722353:1-546 [pilon] Processing NODE_3144_length_843_cov_3.228532:1-843 [pilon] NODE_8393_length_400_cov_12.311828:1-400 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 75, Coverage: 8, minDepth: 5 [pilon] Confirmed 304 of 400 bases (76.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8393_length_400_cov_12.311828:1-400 [pilon] Processing NODE_2562_length_954_cov_30.400960:1-954 [pilon] NODE_15086_length_230_cov_64.174312:1-230 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 155, Coverage: 8, minDepth: 5 [pilon] Confirmed 173 of 230 bases (75.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15086_length_230_cov_64.174312:1-230 [pilon] Processing NODE_8752_length_380_cov_12.818533:1-380 [pilon] NODE_10945_length_286_cov_13.351515:1-286 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 50, Coverage: 3, minDepth: 5 [pilon] Confirmed 109 of 286 bases (38.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10945_length_286_cov_13.351515:1-286 [pilon] Processing NODE_12263_length_243_cov_34.229508:1-243 [pilon] NODE_10844_length_291_cov_6.447059:1-291 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 32, Coverage: 2, minDepth: 5 [pilon] Confirmed 42 of 291 bases (14.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10844_length_291_cov_6.447059:1-291 [pilon] Processing NODE_13035_length_243_cov_22.565574:1-243 [pilon] NODE_3249_length_824_cov_14.984353:1-824 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 265, Coverage: 27, minDepth: 7 [pilon] Confirmed 683 of 824 bases (82.89%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3249_length_824_cov_14.984353:1-824 [pilon] Processing NODE_8485_length_395_cov_10.496350:1-395 [pilon] NODE_15047_length_241_cov_13.191667:1-241 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 44, Coverage: 3, minDepth: 5 [pilon] Confirmed 60 of 241 bases (24.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15047_length_241_cov_13.191667:1-241 [pilon] Processing NODE_12128_length_243_cov_42.106557:1-243 [pilon] NODE_11009_length_284_cov_14.441718:1-284 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 53, Coverage: 5, minDepth: 5 [pilon] Confirmed 166 of 284 bases (58.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11009_length_284_cov_14.441718:1-284 [pilon] Processing NODE_7277_length_456_cov_1.220896:1-456 [pilon] NODE_7780_length_429_cov_0.720779:1-429 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 61 of 429 bases (14.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7780_length_429_cov_0.720779:1-429 [pilon] Processing NODE_2113_length_1055_cov_35.532120:1-1055 [pilon] NODE_14685_length_243_cov_8.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14685_length_243_cov_8.704918:1-243 [pilon] Processing NODE_10361_length_310_cov_32.619048:1-310 [pilon] NODE_12731_length_243_cov_25.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12731_length_243_cov_25.811475:1-243 [pilon] Processing NODE_3859_length_732_cov_52.998363:1-732 [pilon] NODE_12371_length_243_cov_31.680328:1-243 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 87, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12371_length_243_cov_31.680328:1-243 [pilon] Processing NODE_14016_length_243_cov_14.081967:1-243 [pilon] NODE_10901_length_288_cov_19.646707:1-288 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 65, Coverage: 6, minDepth: 5 [pilon] Confirmed 202 of 288 bases (70.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10901_length_288_cov_19.646707:1-288 [pilon] Processing NODE_15228_length_141_cov_23.600000:1-141 [pilon] NODE_7021_length_470_cov_21.865330:1-470 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 176, Coverage: 21, minDepth: 5 [pilon] Confirmed 414 of 470 bases (88.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7021_length_470_cov_21.865330:1-470 [pilon] Processing NODE_11489_length_264_cov_14.328671:1-264 [pilon] NODE_12086_length_244_cov_16.821138:1-244 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 44, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12086_length_244_cov_16.821138:1-244 [pilon] Processing NODE_5372_length_586_cov_16.135484:1-586 [pilon] NODE_13952_length_243_cov_14.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13952_length_243_cov_14.500000:1-243 [pilon] Processing NODE_7179_length_461_cov_2.005882:1-461 [pilon] NODE_7550_length_441_cov_11.012500:1-441 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 92, Coverage: 7, minDepth: 5 [pilon] Confirmed 218 of 441 bases (49.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7550_length_441_cov_11.012500:1-441 [pilon] Processing NODE_2098_length_1060_cov_2.281150:1-1060 [pilon] NODE_8970_length_368_cov_13.089069:1-368 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 83, Coverage: 10, minDepth: 5 [pilon] Confirmed 287 of 368 bases (77.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8970_length_368_cov_13.089069:1-368 [pilon] Processing NODE_3398_length_798_cov_20.750369:1-798 [pilon] NODE_10035_length_324_cov_15.620690:1-324 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 66, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 324 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10035_length_324_cov_15.620690:1-324 [pilon] Processing NODE_1646_length_1201_cov_8.573148:1-1201 [pilon] NODE_3144_length_843_cov_3.228532:1-843 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 63, Coverage: 10, minDepth: 5 [pilon] Confirmed 710 of 843 bases (84.22%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3144_length_843_cov_3.228532:1-843 [pilon] Processing NODE_558_length_1849_cov_18.937500:1-1849 [pilon] NODE_539_length_1867_cov_5.018328:1-1867 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 223, Coverage: 12, minDepth: 5 [pilon] Confirmed 1616 of 1867 bases (86.56%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_539_length_1867_cov_5.018328:1-1867 [pilon] Processing NODE_7783_length_428_cov_53.729642:1-428 [pilon] NODE_266_length_2298_cov_17.119890:1-2298 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 975, Coverage: 45, minDepth: 11 [pilon] Confirmed 1952 of 2298 bases (84.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_266_length_2298_cov_17.119890:1-2298 [pilon] Processing NODE_2330_length_1004_cov_29.557191:1-1004 [pilon] NODE_10299_length_313_cov_17.921875:1-313 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 64, Coverage: 2, minDepth: 5 [pilon] Confirmed 79 of 313 bases (25.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10299_length_313_cov_17.921875:1-313 [pilon] Processing NODE_4097_length_705_cov_19.393836:1-705 [pilon] NODE_7952_length_420_cov_16.782609:1-420 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 130, Coverage: 12, minDepth: 5 [pilon] Confirmed 240 of 420 bases (57.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7952_length_420_cov_16.782609:1-420 [pilon] Processing NODE_4337_length_677_cov_4.158273:1-677 [pilon] NODE_9970_length_327_cov_15.393204:1-327 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 76, Coverage: 10, minDepth: 5 [pilon] Confirmed 272 of 327 bases (83.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9970_length_327_cov_15.393204:1-327 [pilon] Processing NODE_6114_length_531_cov_12.919512:1-531 [pilon] NODE_3015_length_870_cov_27.260347:1-870 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 493, Coverage: 49, minDepth: 12 [pilon] Confirmed 685 of 870 bases (78.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3015_length_870_cov_27.260347:1-870 [pilon] Processing NODE_4071_length_708_cov_17.930153:1-708 [pilon] NODE_12263_length_243_cov_34.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 93, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12263_length_243_cov_34.229508:1-243 [pilon] Processing NODE_5202_length_601_cov_37.425000:1-601 [pilon] NODE_5328_length_590_cov_27.155650:1-590 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 316, Coverage: 36, minDepth: 9 [pilon] Confirmed 409 of 590 bases (69.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5328_length_590_cov_27.155650:1-590 [pilon] Processing NODE_6839_length_481_cov_7.488889:1-481 [pilon] NODE_14670_length_243_cov_8.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14670_length_243_cov_8.836066:1-243 [pilon] Processing NODE_10641_length_300_cov_13.162011:1-300 [pilon] NODE_8752_length_380_cov_12.818533:1-380 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 79, Coverage: 4, minDepth: 5 [pilon] Confirmed 152 of 380 bases (40.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8752_length_380_cov_12.818533:1-380 [pilon] Processing NODE_4653_length_648_cov_3.259962:1-648 [pilon] NODE_5500_length_577_cov_5.267544:1-577 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 69, Coverage: 9, minDepth: 5 [pilon] Confirmed 419 of 577 bases (72.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5500_length_577_cov_5.267544:1-577 [pilon] Processing NODE_2121_length_1053_cov_17.476395:1-1053 [pilon] NODE_1385_length_1302_cov_21.991533:1-1302 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 650, Coverage: 55, minDepth: 14 [pilon] Confirmed 1034 of 1302 bases (79.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1385_length_1302_cov_21.991533:1-1302 [pilon] Processing NODE_1622_length_1210_cov_20.580349:1-1210 [pilon] NODE_2562_length_954_cov_30.400960:1-954 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 559, Coverage: 63, minDepth: 16 [pilon] Confirmed 810 of 954 bases (84.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2562_length_954_cov_30.400960:1-954 [pilon] Processing NODE_6022_length_539_cov_19.301435:1-539 [pilon] NODE_8485_length_395_cov_10.496350:1-395 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 94, Coverage: 9, minDepth: 5 [pilon] Confirmed 241 of 395 bases (61.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8485_length_395_cov_10.496350:1-395 [pilon] Processing NODE_5246_length_597_cov_2.985294:1-597 [pilon] NODE_12128_length_243_cov_42.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 113, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12128_length_243_cov_42.106557:1-243 [pilon] Processing NODE_13345_length_243_cov_19.868852:1-243 [pilon] NODE_13035_length_243_cov_22.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13035_length_243_cov_22.565574:1-243 [pilon] Processing NODE_1223_length_1378_cov_32.102625:1-1378 [pilon] NODE_15228_length_141_cov_23.600000:1-141 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 141 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15228_length_141_cov_23.600000:1-141 [pilon] Processing NODE_11094_length_279_cov_29.930380:1-279 [pilon] NODE_7277_length_456_cov_1.220896:1-456 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 142 of 456 bases (31.14%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7277_length_456_cov_1.220896:1-456 [pilon] Processing NODE_8418_length_398_cov_58.870036:1-398 [pilon] NODE_10361_length_310_cov_32.619048:1-310 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 124, Coverage: 15, minDepth: 5 [pilon] Confirmed 256 of 310 bases (82.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10361_length_310_cov_32.619048:1-310 [pilon] Processing NODE_6775_length_485_cov_1.082418:1-485 [pilon] NODE_14016_length_243_cov_14.081967:1-243 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 63, Coverage: 7, minDepth: 5 [pilon] Confirmed 155 of 243 bases (63.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14016_length_243_cov_14.081967:1-243 [pilon] NODE_558_length_1849_cov_18.937500:1-1849 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 766, Coverage: 40, minDepth: 10 [pilon] Confirmed 1618 of 1849 bases (87.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_10843_length_291_cov_7.705882:1-291 [pilon] Finished processing NODE_558_length_1849_cov_18.937500:1-1849 [pilon] Processing NODE_13680_length_243_cov_16.647541:1-243 [pilon] NODE_2113_length_1055_cov_35.532120:1-1055 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 766, Coverage: 70, minDepth: 18 [pilon] Confirmed 1019 of 1055 bases (96.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2113_length_1055_cov_35.532120:1-1055 [pilon] Processing NODE_13878_length_243_cov_15.065574:1-243 [pilon] NODE_7179_length_461_cov_2.005882:1-461 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 98 of 461 bases (21.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7179_length_461_cov_2.005882:1-461 [pilon] Processing NODE_12619_length_243_cov_27.327869:1-243 [pilon] NODE_3859_length_732_cov_52.998363:1-732 log: [pilon] frags shovill.bam: coverage 99 [pilon] Total Reads: 689, Coverage: 99, minDepth: 25 [pilon] Confirmed 620 of 732 bases (84.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3859_length_732_cov_52.998363:1-732 [pilon] Processing NODE_12140_length_243_cov_40.467213:1-243 [pilon] NODE_5202_length_601_cov_37.425000:1-601 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 395, Coverage: 56, minDepth: 14 [pilon] Confirmed 503 of 601 bases (83.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5202_length_601_cov_37.425000:1-601 [pilon] Processing NODE_13178_length_243_cov_21.303279:1-243 [pilon] NODE_5372_length_586_cov_16.135484:1-586 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 175, Coverage: 24, minDepth: 6 [pilon] Confirmed 442 of 586 bases (75.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5372_length_586_cov_16.135484:1-586 [pilon] NODE_3398_length_798_cov_20.750369:1-798 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 332, Coverage: 16, minDepth: 5 [pilon] Confirmed 652 of 798 bases (81.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3398_length_798_cov_20.750369:1-798 [pilon] Processing NODE_5084_length_611_cov_32.395918:1-611 [pilon] Processing NODE_7671_length_434_cov_20.977636:1-434 [pilon] NODE_11489_length_264_cov_14.328671:1-264 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 42, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 264 bases (49.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11489_length_264_cov_14.328671:1-264 [pilon] Processing NODE_9714_length_337_cov_25.634259:1-337 [pilon] NODE_2098_length_1060_cov_2.281150:1-1060 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 775 of 1060 bases (73.11%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2098_length_1060_cov_2.281150:1-1060 [pilon] Processing NODE_7237_length_458_cov_5.940653:1-458 [pilon] NODE_7783_length_428_cov_53.729642:1-428 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 387, Coverage: 70, minDepth: 18 [pilon] Confirmed 358 of 428 bases (83.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7783_length_428_cov_53.729642:1-428 [pilon] Processing NODE_8502_length_393_cov_44.242647:1-393 [pilon] NODE_1646_length_1201_cov_8.573148:1-1201 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 261, Coverage: 17, minDepth: 5 [pilon] Confirmed 911 of 1201 bases (75.85%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1646_length_1201_cov_8.573148:1-1201 [pilon] Processing NODE_14550_length_243_cov_9.909836:1-243 [pilon] NODE_4097_length_705_cov_19.393836:1-705 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 250, Coverage: 29, minDepth: 7 [pilon] Confirmed 626 of 705 bases (88.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4097_length_705_cov_19.393836:1-705 [pilon] Processing NODE_8591_length_389_cov_13.287313:1-389 [pilon] NODE_4337_length_677_cov_4.158273:1-677 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 56, Coverage: 11, minDepth: 5 [pilon] Confirmed 501 of 677 bases (74.00%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4337_length_677_cov_4.158273:1-677 [pilon] Processing NODE_8704_length_382_cov_13.739464:1-382 [pilon] NODE_6114_length_531_cov_12.919512:1-531 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 180, Coverage: 25, minDepth: 6 [pilon] Confirmed 367 of 531 bases (69.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6114_length_531_cov_12.919512:1-531 [pilon] Processing NODE_239_length_2380_cov_14.370518:1-2380 [pilon] NODE_2330_length_1004_cov_29.557191:1-1004 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 641, Coverage: 44, minDepth: 11 [pilon] Confirmed 783 of 1004 bases (77.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2330_length_1004_cov_29.557191:1-1004 [pilon] Processing NODE_9549_length_344_cov_24.170404:1-344 [pilon] NODE_4071_length_708_cov_17.930153:1-708 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 264, Coverage: 27, minDepth: 7 [pilon] Confirmed 592 of 708 bases (83.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4071_length_708_cov_17.930153:1-708 [pilon] Processing NODE_7427_length_447_cov_2.444785:1-447 [pilon] NODE_4653_length_648_cov_3.259962:1-648 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 484 of 648 bases (74.69%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4653_length_648_cov_3.259962:1-648 [pilon] Processing NODE_13682_length_243_cov_16.639344:1-243 [pilon] NODE_10641_length_300_cov_13.162011:1-300 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 53, Coverage: 5, minDepth: 5 [pilon] Confirmed 175 of 300 bases (58.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10641_length_300_cov_13.162011:1-300 [pilon] Processing NODE_1662_length_1196_cov_1.820465:1-1196 [pilon] NODE_2121_length_1053_cov_17.476395:1-1053 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 354, Coverage: 28, minDepth: 7 [pilon] Confirmed 800 of 1053 bases (75.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2121_length_1053_cov_17.476395:1-1053 [pilon] Processing NODE_7854_length_425_cov_2.023026:1-425 [pilon] NODE_6839_length_481_cov_7.488889:1-481 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 76, Coverage: 4, minDepth: 5 [pilon] Confirmed 219 of 481 bases (45.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6839_length_481_cov_7.488889:1-481 [pilon] Processing NODE_9098_length_361_cov_39.212500:1-361 [pilon] NODE_11094_length_279_cov_29.930380:1-279 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 100, Coverage: 11, minDepth: 5 [pilon] Confirmed 217 of 279 bases (77.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11094_length_279_cov_29.930380:1-279 [pilon] Processing NODE_2759_length_917_cov_6.889447:1-917 [pilon] NODE_13345_length_243_cov_19.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13345_length_243_cov_19.868852:1-243 [pilon] Processing NODE_14954_length_243_cov_6.090164:1-243 [pilon] NODE_6022_length_539_cov_19.301435:1-539 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 187, Coverage: 20, minDepth: 5 [pilon] Confirmed 478 of 539 bases (88.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6022_length_539_cov_19.301435:1-539 [pilon] Processing NODE_9620_length_341_cov_17.436364:1-341 [pilon] NODE_1622_length_1210_cov_20.580349:1-1210 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 529, Coverage: 44, minDepth: 11 [pilon] Confirmed 1128 of 1210 bases (93.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1622_length_1210_cov_20.580349:1-1210 [pilon] Processing NODE_3529_length_779_cov_43.253799:1-779 [pilon] NODE_5246_length_597_cov_2.985294:1-597 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 331 of 597 bases (55.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5246_length_597_cov_2.985294:1-597 [pilon] Processing NODE_9774_length_336_cov_8.009302:1-336 [pilon] NODE_1223_length_1378_cov_32.102625:1-1378 log: [pilon] frags shovill.bam: coverage 89 [pilon] Total Reads: 1089, Coverage: 89, minDepth: 22 [pilon] Confirmed 1144 of 1378 bases (83.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1223_length_1378_cov_32.102625:1-1378 [pilon] Processing NODE_12435_length_243_cov_30.245902:1-243 [pilon] NODE_6775_length_485_cov_1.082418:1-485 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 64 of 485 bases (13.20%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6775_length_485_cov_1.082418:1-485 [pilon] Processing NODE_6098_length_532_cov_8.761557:1-532 [pilon] NODE_8418_length_398_cov_58.870036:1-398 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 370, Coverage: 68, minDepth: 17 [pilon] Confirmed 357 of 398 bases (89.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8418_length_398_cov_58.870036:1-398 [pilon] Processing NODE_3133_length_845_cov_24.366022:1-845 [pilon] NODE_13680_length_243_cov_16.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13680_length_243_cov_16.647541:1-243 [pilon] Processing NODE_3793_length_741_cov_18.598387:1-741 [pilon] NODE_13178_length_243_cov_21.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13178_length_243_cov_21.303279:1-243 [pilon] Processing NODE_5978_length_543_cov_0.767773:1-543 [pilon] NODE_10843_length_291_cov_7.705882:1-291 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 31, Coverage: 3, minDepth: 5 [pilon] Confirmed 39 of 291 bases (13.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10843_length_291_cov_7.705882:1-291 [pilon] Processing NODE_13034_length_243_cov_22.606557:1-243 [pilon] NODE_12619_length_243_cov_27.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12619_length_243_cov_27.327869:1-243 [pilon] Processing NODE_13842_length_243_cov_15.352459:1-243 [pilon] NODE_7671_length_434_cov_20.977636:1-434 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 150, Coverage: 19, minDepth: 5 [pilon] Confirmed 340 of 434 bases (78.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7671_length_434_cov_20.977636:1-434 [pilon] Processing NODE_10236_length_315_cov_24.742268:1-315 [pilon] NODE_12140_length_243_cov_40.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 97, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12140_length_243_cov_40.467213:1-243 [pilon] Processing NODE_11616_length_259_cov_8.188406:1-259 [pilon] NODE_9714_length_337_cov_25.634259:1-337 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 114, Coverage: 14, minDepth: 5 [pilon] Confirmed 252 of 337 bases (74.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9714_length_337_cov_25.634259:1-337 [pilon] Processing NODE_10140_length_320_cov_26.517588:1-320 [pilon] NODE_13878_length_243_cov_15.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13878_length_243_cov_15.065574:1-243 [pilon] Processing NODE_3926_length_724_cov_19.908789:1-724 [pilon] NODE_5084_length_611_cov_32.395918:1-611 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 377, Coverage: 50, minDepth: 13 [pilon] Confirmed 432 of 611 bases (70.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5084_length_611_cov_32.395918:1-611 [pilon] Processing NODE_13081_length_243_cov_22.114754:1-243 [pilon] NODE_8502_length_393_cov_44.242647:1-393 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 276, Coverage: 49, minDepth: 12 [pilon] Confirmed 323 of 393 bases (82.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8502_length_393_cov_44.242647:1-393 [pilon] Processing NODE_8489_length_394_cov_46.582418:1-394 [pilon] NODE_13682_length_243_cov_16.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13682_length_243_cov_16.639344:1-243 [pilon] Processing NODE_7827_length_426_cov_10.718033:1-426 [pilon] NODE_7237_length_458_cov_5.940653:1-458 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 41, Coverage: 11, minDepth: 5 [pilon] Confirmed 355 of 458 bases (77.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7237_length_458_cov_5.940653:1-458 [pilon] NODE_8591_length_389_cov_13.287313:1-389 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 82, Coverage: 10, minDepth: 5 [pilon] Confirmed 262 of 389 bases (67.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8591_length_389_cov_13.287313:1-389 [pilon] Processing NODE_10642_length_300_cov_12.977654:1-300 [pilon] Processing NODE_12344_length_243_cov_32.336066:1-243 [pilon] NODE_14550_length_243_cov_9.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14550_length_243_cov_9.909836:1-243 [pilon] Processing NODE_14129_length_243_cov_13.286885:1-243 [pilon] NODE_8704_length_382_cov_13.739464:1-382 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 96, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 382 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8704_length_382_cov_13.739464:1-382 [pilon] Processing NODE_10013_length_324_cov_28.187192:1-324 [pilon] NODE_239_length_2380_cov_14.370518:1-2380 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 799, Coverage: 39, minDepth: 10 [pilon] Confirmed 1878 of 2380 bases (78.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_239_length_2380_cov_14.370518:1-2380 [pilon] Processing NODE_1780_length_1153_cov_11.762597:1-1153 [pilon] NODE_9549_length_344_cov_24.170404:1-344 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 117, Coverage: 16, minDepth: 5 [pilon] Confirmed 294 of 344 bases (85.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9549_length_344_cov_24.170404:1-344 [pilon] Processing NODE_2723_length_924_cov_15.580324:1-924 [pilon] NODE_7854_length_425_cov_2.023026:1-425 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 23, Coverage: 6, minDepth: 5 [pilon] Confirmed 296 of 425 bases (69.65%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7854_length_425_cov_2.023026:1-425 [pilon] Processing NODE_13207_length_243_cov_21.008197:1-243 [pilon] NODE_7427_length_447_cov_2.444785:1-447 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 27, Coverage: 7, minDepth: 5 [pilon] Confirmed 340 of 447 bases (76.06%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7427_length_447_cov_2.444785:1-447 [pilon] Processing NODE_14484_length_243_cov_10.368852:1-243 [pilon] NODE_1662_length_1196_cov_1.820465:1-1196 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 633 of 1196 bases (52.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1662_length_1196_cov_1.820465:1-1196 [pilon] Processing NODE_9246_length_356_cov_14.893617:1-356 [pilon] NODE_9620_length_341_cov_17.436364:1-341 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 91, Coverage: 12, minDepth: 5 [pilon] Confirmed 268 of 341 bases (78.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9620_length_341_cov_17.436364:1-341 [pilon] Processing NODE_12969_length_243_cov_23.262295:1-243 [pilon] NODE_9098_length_361_cov_39.212500:1-361 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 208, Coverage: 26, minDepth: 7 [pilon] Confirmed 324 of 361 bases (89.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9098_length_361_cov_39.212500:1-361 [pilon] Processing NODE_14058_length_243_cov_13.778689:1-243 [pilon] NODE_2759_length_917_cov_6.889447:1-917 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 148, Coverage: 13, minDepth: 5 [pilon] Confirmed 617 of 917 bases (67.28%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2759_length_917_cov_6.889447:1-917 [pilon] Processing NODE_2085_length_1063_cov_11.460722:1-1063 [pilon] NODE_14954_length_243_cov_6.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14954_length_243_cov_6.090164:1-243 [pilon] Processing NODE_6021_length_539_cov_19.990431:1-539 [pilon] NODE_12435_length_243_cov_30.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12435_length_243_cov_30.245902:1-243 [pilon] Processing NODE_10658_length_300_cov_5.927374:1-300 [pilon] NODE_6098_length_532_cov_8.761557:1-532 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 77, Coverage: 13, minDepth: 5 [pilon] Confirmed 388 of 532 bases (72.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6098_length_532_cov_8.761557:1-532 [pilon] Processing NODE_9668_length_339_cov_15.500000:1-339 [pilon] NODE_3529_length_779_cov_43.253799:1-779 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 667, Coverage: 86, minDepth: 22 [pilon] Confirmed 558 of 779 bases (71.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3529_length_779_cov_43.253799:1-779 [pilon] Processing NODE_10973_length_285_cov_18.658537:1-285 [pilon] NODE_3133_length_845_cov_24.366022:1-845 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 405, Coverage: 51, minDepth: 13 [pilon] Confirmed 628 of 845 bases (74.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3133_length_845_cov_24.366022:1-845 [pilon] Processing NODE_9850_length_332_cov_28.113744:1-332 [pilon] NODE_9774_length_336_cov_8.009302:1-336 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 40, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 336 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9774_length_336_cov_8.009302:1-336 [pilon] Processing NODE_3784_length_743_cov_2.310289:1-743 [pilon] NODE_3793_length_741_cov_18.598387:1-741 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 250, Coverage: 31, minDepth: 8 [pilon] Confirmed 676 of 741 bases (91.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3793_length_741_cov_18.598387:1-741 [pilon] Processing NODE_12919_length_243_cov_23.860656:1-243 [pilon] NODE_10140_length_320_cov_26.517588:1-320 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 143, Coverage: 6, minDepth: 5 [pilon] Confirmed 171 of 320 bases (53.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10140_length_320_cov_26.517588:1-320 [pilon] Processing NODE_14818_length_243_cov_7.508197:1-243 [pilon] NODE_13034_length_243_cov_22.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13034_length_243_cov_22.606557:1-243 [pilon] Processing NODE_8978_length_367_cov_29.130081:1-367 [pilon] NODE_5978_length_543_cov_0.767773:1-543 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 13, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 543 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5978_length_543_cov_0.767773:1-543 [pilon] Processing NODE_7132_length_464_cov_7.113703:1-464 [pilon] NODE_13842_length_243_cov_15.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13842_length_243_cov_15.352459:1-243 [pilon] Processing NODE_828_length_1611_cov_3.671812:1-1611 [pilon] NODE_10236_length_315_cov_24.742268:1-315 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 107, Coverage: 12, minDepth: 5 [pilon] Confirmed 254 of 315 bases (80.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10236_length_315_cov_24.742268:1-315 [pilon] Processing NODE_2191_length_1036_cov_36.755191:1-1036 [pilon] NODE_13081_length_243_cov_22.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13081_length_243_cov_22.114754:1-243 [pilon] Processing NODE_13549_length_243_cov_17.926230:1-243 [pilon] NODE_11616_length_259_cov_8.188406:1-259 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 25, Coverage: 4, minDepth: 5 [pilon] Confirmed 120 of 259 bases (46.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11616_length_259_cov_8.188406:1-259 [pilon] Processing NODE_4530_length_659_cov_3.079926:1-659 [pilon] NODE_3926_length_724_cov_19.908789:1-724 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 280, Coverage: 30, minDepth: 8 [pilon] Confirmed 445 of 724 bases (61.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3926_length_724_cov_19.908789:1-724 [pilon] Processing NODE_13172_length_243_cov_21.360656:1-243 [pilon] NODE_7827_length_426_cov_10.718033:1-426 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 68, Coverage: 13, minDepth: 5 [pilon] Confirmed 330 of 426 bases (77.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7827_length_426_cov_10.718033:1-426 [pilon] Processing NODE_7259_length_456_cov_41.200000:1-456 [pilon] NODE_8489_length_394_cov_46.582418:1-394 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 282, Coverage: 34, minDepth: 9 [pilon] Confirmed 303 of 394 bases (76.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8489_length_394_cov_46.582418:1-394 [pilon] Processing NODE_372_length_2090_cov_15.797867:1-2090 [pilon] NODE_10642_length_300_cov_12.977654:1-300 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 60, Coverage: 3, minDepth: 5 [pilon] Confirmed 85 of 300 bases (28.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10642_length_300_cov_12.977654:1-300 [pilon] Processing NODE_14492_length_243_cov_10.327869:1-243 [pilon] NODE_13207_length_243_cov_21.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13207_length_243_cov_21.008197:1-243 [pilon] Processing NODE_8017_length_417_cov_26.908784:1-417 [pilon] NODE_12344_length_243_cov_32.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12344_length_243_cov_32.336066:1-243 [pilon] Processing NODE_1618_length_1211_cov_26.583486:1-1211 [pilon] NODE_2723_length_924_cov_15.580324:1-924 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 388, Coverage: 43, minDepth: 11 [pilon] Confirmed 858 of 924 bases (92.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2723_length_924_cov_15.580324:1-924 [pilon] Processing NODE_11263_length_273_cov_17.631579:1-273 [pilon] NODE_14484_length_243_cov_10.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14484_length_243_cov_10.368852:1-243 [pilon] Processing NODE_7361_length_450_cov_16.680851:1-450 [pilon] NODE_14129_length_243_cov_13.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14129_length_243_cov_13.286885:1-243 [pilon] Processing NODE_9337_length_353_cov_14.469828:1-353 [pilon] NODE_10013_length_324_cov_28.187192:1-324 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 99, Coverage: 5, minDepth: 5 [pilon] Confirmed 143 of 324 bases (44.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10013_length_324_cov_28.187192:1-324 [pilon] Processing NODE_8059_length_415_cov_4.486395:1-415 [pilon] NODE_9246_length_356_cov_14.893617:1-356 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 79, Coverage: 12, minDepth: 5 [pilon] Confirmed 282 of 356 bases (79.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9246_length_356_cov_14.893617:1-356 [pilon] Processing NODE_10904_length_288_cov_19.167665:1-288 [pilon] NODE_12969_length_243_cov_23.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12969_length_243_cov_23.262295:1-243 [pilon] Processing NODE_10699_length_297_cov_29.585227:1-297 [pilon] NODE_1780_length_1153_cov_11.762597:1-1153 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 371, Coverage: 34, minDepth: 9 [pilon] Confirmed 759 of 1153 bases (65.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1780_length_1153_cov_11.762597:1-1153 [pilon] Processing NODE_11600_length_260_cov_20.086331:1-260 [pilon] NODE_10973_length_285_cov_18.658537:1-285 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 73, Coverage: 5, minDepth: 5 [pilon] Confirmed 147 of 285 bases (51.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10973_length_285_cov_18.658537:1-285 [pilon] NODE_9668_length_339_cov_15.500000:1-339 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 78, Coverage: 7, minDepth: 5 [pilon] Confirmed 225 of 339 bases (66.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9668_length_339_cov_15.500000:1-339 [pilon] Processing NODE_4445_length_666_cov_21.368807:1-666 [pilon] Processing NODE_13404_length_243_cov_19.286885:1-243 [pilon] NODE_6021_length_539_cov_19.990431:1-539 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 167, Coverage: 16, minDepth: 5 [pilon] Confirmed 397 of 539 bases (73.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6021_length_539_cov_19.990431:1-539 [pilon] Processing NODE_12194_length_243_cov_37.008197:1-243 [pilon] NODE_10658_length_300_cov_5.927374:1-300 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 25, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10658_length_300_cov_5.927374:1-300 [pilon] Processing NODE_12628_length_243_cov_27.213115:1-243 [pilon] NODE_14058_length_243_cov_13.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14058_length_243_cov_13.778689:1-243 [pilon] Processing NODE_721_length_1687_cov_33.287356:1-1687 [pilon] NODE_2085_length_1063_cov_11.460722:1-1063 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 361, Coverage: 37, minDepth: 9 [pilon] Confirmed 893 of 1063 bases (84.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2085_length_1063_cov_11.460722:1-1063 [pilon] Processing NODE_11821_length_252_cov_17.030534:1-252 [pilon] NODE_9850_length_332_cov_28.113744:1-332 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 145, Coverage: 15, minDepth: 5 [pilon] Confirmed 270 of 332 bases (81.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9850_length_332_cov_28.113744:1-332 [pilon] Processing NODE_682_length_1719_cov_12.197747:1-1719 [pilon] NODE_3784_length_743_cov_2.310289:1-743 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 41, Coverage: 7, minDepth: 5 [pilon] Confirmed 344 of 743 bases (46.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3784_length_743_cov_2.310289:1-743 [pilon] Processing NODE_5761_length_559_cov_1.034247:1-559 [pilon] NODE_7132_length_464_cov_7.113703:1-464 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 63, Coverage: 7, minDepth: 5 [pilon] Confirmed 322 of 464 bases (69.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7132_length_464_cov_7.113703:1-464 [pilon] Processing NODE_8366_length_402_cov_8.437722:1-402 [pilon] NODE_12919_length_243_cov_23.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12919_length_243_cov_23.860656:1-243 [pilon] Processing NODE_14512_length_243_cov_10.229508:1-243 [pilon] NODE_8978_length_367_cov_29.130081:1-367 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 163, Coverage: 14, minDepth: 5 [pilon] Confirmed 254 of 367 bases (69.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8978_length_367_cov_29.130081:1-367 [pilon] Processing NODE_12624_length_243_cov_27.262295:1-243 [pilon] NODE_14818_length_243_cov_7.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14818_length_243_cov_7.508197:1-243 [pilon] Processing NODE_15235_length_138_cov_2.000000:1-138 [pilon] NODE_13549_length_243_cov_17.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13549_length_243_cov_17.926230:1-243 [pilon] Processing NODE_7794_length_428_cov_2.263844:1-428 [pilon] NODE_828_length_1611_cov_3.671812:1-1611 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 129, Coverage: 10, minDepth: 5 [pilon] Confirmed 1030 of 1611 bases (63.94%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_828_length_1611_cov_3.671812:1-1611 [pilon] Processing NODE_12030_length_246_cov_10.440000:1-246 [pilon] NODE_13172_length_243_cov_21.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13172_length_243_cov_21.360656:1-243 [pilon] Processing NODE_11225_length_274_cov_23.032680:1-274 [pilon] NODE_7259_length_456_cov_41.200000:1-456 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 315, Coverage: 43, minDepth: 11 [pilon] Confirmed 306 of 456 bases (67.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7259_length_456_cov_41.200000:1-456 [pilon] Processing NODE_10598_length_301_cov_7.411111:1-301 [pilon] NODE_14492_length_243_cov_10.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14492_length_243_cov_10.327869:1-243 [pilon] Processing NODE_8902_length_372_cov_9.940239:1-372 [pilon] NODE_2191_length_1036_cov_36.755191:1-1036 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 765, Coverage: 85, minDepth: 21 [pilon] Confirmed 698 of 1036 bases (67.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2191_length_1036_cov_36.755191:1-1036 [pilon] Processing NODE_12652_length_243_cov_26.860656:1-243 [pilon] NODE_4530_length_659_cov_3.079926:1-659 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 51, Coverage: 10, minDepth: 5 [pilon] Confirmed 522 of 659 bases (79.21%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4530_length_659_cov_3.079926:1-659 [pilon] Processing NODE_12640_length_243_cov_26.967213:1-243 [pilon] NODE_372_length_2090_cov_15.797867:1-2090 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 617, Coverage: 23, minDepth: 6 [pilon] Confirmed 1503 of 2090 bases (71.91%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_372_length_2090_cov_15.797867:1-2090 [pilon] Processing NODE_9819_length_333_cov_22.773585:1-333 [pilon] NODE_11263_length_273_cov_17.631579:1-273 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 177 of 273 bases (64.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11263_length_273_cov_17.631579:1-273 [pilon] Processing NODE_14576_length_243_cov_9.631148:1-243 [pilon] NODE_7361_length_450_cov_16.680851:1-450 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 115, Coverage: 8, minDepth: 5 [pilon] Confirmed 183 of 450 bases (40.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7361_length_450_cov_16.680851:1-450 [pilon] Processing NODE_9364_length_351_cov_23.408696:1-351 [pilon] NODE_9337_length_353_cov_14.469828:1-353 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 83, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 353 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9337_length_353_cov_14.469828:1-353 [pilon] Processing NODE_10934_length_287_cov_14.415663:1-287 [pilon] NODE_1618_length_1211_cov_26.583486:1-1211 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 697, Coverage: 40, minDepth: 10 [pilon] Confirmed 1102 of 1211 bases (91.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1618_length_1211_cov_26.583486:1-1211 [pilon] Processing NODE_14521_length_243_cov_10.131148:1-243 [pilon] NODE_8059_length_415_cov_4.486395:1-415 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 42, Coverage: 4, minDepth: 5 [pilon] Confirmed 200 of 415 bases (48.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8059_length_415_cov_4.486395:1-415 [pilon] Processing NODE_6488_length_504_cov_16.971279:1-504 [pilon] NODE_8017_length_417_cov_26.908784:1-417 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 179, Coverage: 15, minDepth: 5 [pilon] Confirmed 243 of 417 bases (58.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8017_length_417_cov_26.908784:1-417 [pilon] Processing NODE_11383_length_267_cov_41.417808:1-267 [pilon] NODE_10904_length_288_cov_19.167665:1-288 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 60, Coverage: 5, minDepth: 5 [pilon] Confirmed 151 of 288 bases (52.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_11600_length_260_cov_20.086331:1-260 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 69, Coverage: 4, minDepth: 5 [pilon] Confirmed 93 of 260 bases (35.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10904_length_288_cov_19.167665:1-288 [pilon] Finished processing NODE_11600_length_260_cov_20.086331:1-260 [pilon] Processing NODE_1885_length_1117_cov_31.342369:1-1117 [pilon] Processing NODE_2415_length_988_cov_4.953864:1-988 [pilon] NODE_10699_length_297_cov_29.585227:1-297 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 128, Coverage: 11, minDepth: 5 [pilon] Confirmed 228 of 297 bases (76.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10699_length_297_cov_29.585227:1-297 [pilon] Processing NODE_14581_length_243_cov_9.581967:1-243 [pilon] NODE_8366_length_402_cov_8.437722:1-402 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 57, Coverage: 7, minDepth: 5 [pilon] Confirmed 294 of 402 bases (73.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8366_length_402_cov_8.437722:1-402 [pilon] Processing NODE_9273_length_354_cov_32.467811:1-354 [pilon] NODE_13404_length_243_cov_19.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13404_length_243_cov_19.286885:1-243 [pilon] Processing NODE_15230_length_140_cov_23.157895:1-140 [pilon] NODE_4445_length_666_cov_21.368807:1-666 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 291, Coverage: 40, minDepth: 10 [pilon] Confirmed 624 of 666 bases (93.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4445_length_666_cov_21.368807:1-666 [pilon] Processing NODE_2232_length_1025_cov_2.402655:1-1025 [pilon] NODE_11821_length_252_cov_17.030534:1-252 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 45, Coverage: 4, minDepth: 5 [pilon] Confirmed 77 of 252 bases (30.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11821_length_252_cov_17.030534:1-252 [pilon] NODE_12628_length_243_cov_27.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12628_length_243_cov_27.213115:1-243 [pilon] NODE_12194_length_243_cov_37.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_9416_length_349_cov_32.350877:1-349 [pilon] Processing NODE_655_length_1742_cov_18.269587:1-1742 [pilon] Finished processing NODE_12194_length_243_cov_37.008197:1-243 [pilon] Processing NODE_15053_length_240_cov_13.747899:1-240 [pilon] NODE_721_length_1687_cov_33.287356:1-1687 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 1328, Coverage: 61, minDepth: 15 [pilon] Confirmed 1551 of 1687 bases (91.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_721_length_1687_cov_33.287356:1-1687 [pilon] Processing NODE_3792_length_741_cov_21.461290:1-741 [pilon] NODE_12030_length_246_cov_10.440000:1-246 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 30, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12030_length_246_cov_10.440000:1-246 [pilon] Processing NODE_13978_length_243_cov_14.278689:1-243 [pilon] NODE_5761_length_559_cov_1.034247:1-559 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 120 of 559 bases (21.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5761_length_559_cov_1.034247:1-559 [pilon] Processing NODE_6211_length_523_cov_32.415423:1-523 [pilon] NODE_682_length_1719_cov_12.197747:1-1719 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 528, Coverage: 40, minDepth: 10 [pilon] Confirmed 1322 of 1719 bases (76.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_682_length_1719_cov_12.197747:1-1719 [pilon] Processing NODE_11203_length_276_cov_12.683871:1-276 [pilon] NODE_15235_length_138_cov_2.000000:1-138 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 138 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15235_length_138_cov_2.000000:1-138 [pilon] Processing NODE_9788_length_335_cov_11.261682:1-335 [pilon] NODE_14512_length_243_cov_10.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14512_length_243_cov_10.229508:1-243 [pilon] Processing NODE_7528_length_442_cov_0.996885:1-442 [pilon] NODE_12624_length_243_cov_27.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12624_length_243_cov_27.262295:1-243 [pilon] Processing NODE_6544_length_501_cov_0.644737:1-501 [pilon] NODE_7794_length_428_cov_2.263844:1-428 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 135 of 428 bases (31.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7794_length_428_cov_2.263844:1-428 [pilon] Processing NODE_4646_length_648_cov_17.931689:1-648 [pilon] NODE_11225_length_274_cov_23.032680:1-274 log: [pilon] NODE_10598_length_301_cov_7.411111:1-301 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 31, Coverage: 2, minDepth: 5 [pilon] Confirmed 18 of 301 bases (5.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10598_length_301_cov_7.411111:1-301 [pilon] Processing NODE_11500_length_264_cov_6.979021:1-264 [pilon] NODE_8902_length_372_cov_9.940239:1-372 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 372 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8902_length_372_cov_9.940239:1-372 [pilon] Processing NODE_6393_length_510_cov_49.359897:1-510 [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 72, Coverage: 6, minDepth: 5 [pilon] Confirmed 193 of 274 bases (70.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11225_length_274_cov_23.032680:1-274 [pilon] Processing NODE_872_length_1581_cov_25.136986:1-1581 [pilon] NODE_12640_length_243_cov_26.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12640_length_243_cov_26.967213:1-243 [pilon] Processing NODE_2867_length_899_cov_13.255784:1-899 [pilon] NODE_12652_length_243_cov_26.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12652_length_243_cov_26.860656:1-243 [pilon] Processing NODE_5643_length_567_cov_32.825112:1-567 [pilon] NODE_9819_length_333_cov_22.773585:1-333 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 94, Coverage: 4, minDepth: 5 [pilon] Confirmed 139 of 333 bases (41.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9819_length_333_cov_22.773585:1-333 [pilon] Processing NODE_9038_length_364_cov_25.958848:1-364 [pilon] NODE_6488_length_504_cov_16.971279:1-504 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 163, Coverage: 19, minDepth: 5 [pilon] Confirmed 455 of 504 bases (90.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6488_length_504_cov_16.971279:1-504 [pilon] Processing NODE_6369_length_512_cov_33.892583:1-512 [pilon] NODE_10934_length_287_cov_14.415663:1-287 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 54, Coverage: 6, minDepth: 5 [pilon] Confirmed 161 of 287 bases (56.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10934_length_287_cov_14.415663:1-287 [pilon] Processing NODE_14229_length_243_cov_12.360656:1-243 [pilon] NODE_14576_length_243_cov_9.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14576_length_243_cov_9.631148:1-243 [pilon] Processing NODE_11769_length_255_cov_6.828358:1-255 [pilon] NODE_11383_length_267_cov_41.417808:1-267 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 132, Coverage: 7, minDepth: 5 [pilon] Confirmed 169 of 267 bases (63.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11383_length_267_cov_41.417808:1-267 [pilon] Processing NODE_5210_length_600_cov_69.469729:1-600 [pilon] NODE_9364_length_351_cov_23.408696:1-351 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 88, Coverage: 8, minDepth: 5 [pilon] Confirmed 236 of 351 bases (67.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9364_length_351_cov_23.408696:1-351 [pilon] Processing NODE_13644_length_243_cov_17.098361:1-243 [pilon] NODE_14521_length_243_cov_10.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14521_length_243_cov_10.131148:1-243 [pilon] Processing NODE_9369_length_351_cov_20.473913:1-351 [pilon] NODE_2415_length_988_cov_4.953864:1-988 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 145, Coverage: 14, minDepth: 5 [pilon] Confirmed 669 of 988 bases (67.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2415_length_988_cov_4.953864:1-988 [pilon] Processing NODE_1116_length_1432_cov_15.940503:1-1432 [pilon] NODE_1885_length_1117_cov_31.342369:1-1117 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 724, Coverage: 66, minDepth: 17 [pilon] Confirmed 1027 of 1117 bases (91.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1885_length_1117_cov_31.342369:1-1117 [pilon] Processing NODE_9164_length_359_cov_12.512605:1-359 [pilon] NODE_14581_length_243_cov_9.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14581_length_243_cov_9.581967:1-243 [pilon] Processing NODE_4211_length_692_cov_27.849387:1-692 [pilon] NODE_9273_length_354_cov_32.467811:1-354 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 148, Coverage: 2, minDepth: 5 [pilon] Confirmed 119 of 354 bases (33.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9273_length_354_cov_32.467811:1-354 [pilon] Processing NODE_263_length_2303_cov_19.561870:1-2303 [pilon] NODE_13978_length_243_cov_14.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13978_length_243_cov_14.278689:1-243 [pilon] Processing NODE_6668_length_492_cov_24.649596:1-492 [pilon] NODE_2232_length_1025_cov_2.402655:1-1025 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 72, Coverage: 9, minDepth: 5 [pilon] Confirmed 807 of 1025 bases (78.73%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2232_length_1025_cov_2.402655:1-1025 [pilon] Processing NODE_2753_length_917_cov_21.959799:1-917 [pilon] NODE_15230_length_140_cov_23.157895:1-140 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 140 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15230_length_140_cov_23.157895:1-140 [pilon] Processing NODE_7383_length_449_cov_17.856707:1-449 [pilon] NODE_9416_length_349_cov_32.350877:1-349 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 161, Coverage: 15, minDepth: 5 [pilon] Confirmed 248 of 349 bases (71.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9416_length_349_cov_32.350877:1-349 [pilon] Processing NODE_1912_length_1109_cov_41.102227:1-1109 [pilon] NODE_655_length_1742_cov_18.269587:1-1742 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 695, Coverage: 44, minDepth: 11 [pilon] Confirmed 1532 of 1742 bases (87.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_655_length_1742_cov_18.269587:1-1742 [pilon] Processing NODE_683_length_1718_cov_9.568566:1-1718 [pilon] NODE_7528_length_442_cov_0.996885:1-442 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 24 of 442 bases (5.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7528_length_442_cov_0.996885:1-442 [pilon] Processing NODE_4469_length_664_cov_14.841621:1-664 [pilon] NODE_15053_length_240_cov_13.747899:1-240 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 46, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 240 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15053_length_240_cov_13.747899:1-240 [pilon] Processing NODE_504_length_1909_cov_29.802013:1-1909 [pilon] NODE_11203_length_276_cov_12.683871:1-276 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 46, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 276 bases (47.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11203_length_276_cov_12.683871:1-276 [pilon] Processing NODE_13521_length_243_cov_18.155738:1-243 [pilon] NODE_3792_length_741_cov_21.461290:1-741 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 324, Coverage: 42, minDepth: 11 [pilon] Confirmed 665 of 741 bases (89.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3792_length_741_cov_21.461290:1-741 [pilon] Processing NODE_6219_length_523_cov_8.221393:1-523 [pilon] NODE_6211_length_523_cov_32.415423:1-523 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 326, Coverage: 54, minDepth: 14 [pilon] Confirmed 343 of 523 bases (65.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6211_length_523_cov_32.415423:1-523 [pilon] Processing NODE_12858_length_243_cov_24.450820:1-243 [pilon] NODE_9788_length_335_cov_11.261682:1-335 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 62, Coverage: 7, minDepth: 5 [pilon] Confirmed 246 of 335 bases (73.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9788_length_335_cov_11.261682:1-335 [pilon] Processing NODE_694_length_1708_cov_22.580970:1-1708 [pilon] NODE_6544_length_501_cov_0.644737:1-501 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 36 of 501 bases (7.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6544_length_501_cov_0.644737:1-501 [pilon] Processing NODE_4037_length_711_cov_26.149153:1-711 [pilon] NODE_4646_length_648_cov_17.931689:1-648 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 264, Coverage: 36, minDepth: 9 [pilon] Confirmed 508 of 648 bases (78.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4646_length_648_cov_17.931689:1-648 [pilon] Processing NODE_5546_length_574_cov_2.984547:1-574 [pilon] NODE_11500_length_264_cov_6.979021:1-264 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 26, Coverage: 2, minDepth: 5 [pilon] Confirmed 44 of 264 bases (16.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11500_length_264_cov_6.979021:1-264 [pilon] Processing NODE_3460_length_790_cov_17.496263:1-790 [pilon] NODE_6393_length_510_cov_49.359897:1-510 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 414, Coverage: 75, minDepth: 19 [pilon] Confirmed 428 of 510 bases (83.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6393_length_510_cov_49.359897:1-510 [pilon] Processing NODE_8784_length_378_cov_15.828794:1-378 [pilon] NODE_2867_length_899_cov_13.255784:1-899 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 241, Coverage: 34, minDepth: 9 [pilon] Confirmed 615 of 899 bases (68.41%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2867_length_899_cov_13.255784:1-899 [pilon] Processing NODE_3823_length_738_cov_14.085900:1-738 [pilon] NODE_5643_length_567_cov_32.825112:1-567 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 369, Coverage: 31, minDepth: 8 [pilon] Confirmed 412 of 567 bases (72.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5643_length_567_cov_32.825112:1-567 [pilon] Processing NODE_9074_length_363_cov_15.747934:1-363 [pilon] NODE_14229_length_243_cov_12.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14229_length_243_cov_12.360656:1-243 [pilon] Processing NODE_14499_length_243_cov_10.311475:1-243 [pilon] NODE_872_length_1581_cov_25.136986:1-1581 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 891, Coverage: 45, minDepth: 11 [pilon] Confirmed 1339 of 1581 bases (84.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_872_length_1581_cov_25.136986:1-1581 [pilon] Processing NODE_431_length_1994_cov_15.738922:1-1994 [pilon] NODE_6369_length_512_cov_33.892583:1-512 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 299, Coverage: 50, minDepth: 13 [pilon] Confirmed 446 of 512 bases (87.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6369_length_512_cov_33.892583:1-512 [pilon] Processing NODE_2211_length_1031_cov_1.786813:1-1031 [pilon] NODE_11769_length_255_cov_6.828358:1-255 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 20 of 255 bases (7.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11769_length_255_cov_6.828358:1-255 [pilon] Processing NODE_2406_length_989_cov_44.900922:1-989 [pilon] NODE_9038_length_364_cov_25.958848:1-364 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 133, Coverage: 16, minDepth: 5 [pilon] Confirmed 296 of 364 bases (81.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9038_length_364_cov_25.958848:1-364 [pilon] Processing NODE_1579_length_1227_cov_14.357143:1-1227 [pilon] NODE_1912_length_1109_cov_41.102227:1-1109 log: [pilon] frags shovill.bam: coverage 104 [pilon] Total Reads: 952, Coverage: 104, minDepth: 26 [pilon] Confirmed 887 of 1109 bases (79.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1912_length_1109_cov_41.102227:1-1109 [pilon] Processing NODE_12506_length_243_cov_29.016393:1-243 [pilon] NODE_683_length_1718_cov_9.568566:1-1718 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 392, Coverage: 25, minDepth: 6 [pilon] Confirmed 1320 of 1718 bases (76.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_683_length_1718_cov_9.568566:1-1718 [pilon] Processing NODE_4587_length_654_cov_23.969981:1-654 [pilon] NODE_13644_length_243_cov_17.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13644_length_243_cov_17.098361:1-243 [pilon] Processing NODE_3654_length_761_cov_30.667188:1-761 [pilon] NODE_5210_length_600_cov_69.469729:1-600 log: [pilon] frags shovill.bam: coverage 118 [pilon] Total Reads: 756, Coverage: 118, minDepth: 30 [pilon] Confirmed 522 of 600 bases (87.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5210_length_600_cov_69.469729:1-600 [pilon] Processing NODE_6767_length_485_cov_12.807692:1-485 [pilon] NODE_9164_length_359_cov_12.512605:1-359 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 56, Coverage: 9, minDepth: 5 [pilon] Confirmed 257 of 359 bases (71.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9164_length_359_cov_12.512605:1-359 [pilon] Processing NODE_12175_length_243_cov_37.721311:1-243 [pilon] NODE_9369_length_351_cov_20.473913:1-351 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 107, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 351 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9369_length_351_cov_20.473913:1-351 [pilon] Processing NODE_9089_length_362_cov_17.829876:1-362 [pilon] NODE_7383_length_449_cov_17.856707:1-449 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 126, Coverage: 9, minDepth: 5 [pilon] Confirmed 200 of 449 bases (44.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7383_length_449_cov_17.856707:1-449 [pilon] Processing NODE_14823_length_243_cov_7.475410:1-243 [pilon] NODE_6668_length_492_cov_24.649596:1-492 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 212, Coverage: 25, minDepth: 6 [pilon] Confirmed 338 of 492 bases (68.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6668_length_492_cov_24.649596:1-492 [pilon] Processing NODE_7617_length_436_cov_64.711111:1-436 [pilon] NODE_4211_length_692_cov_27.849387:1-692 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 389, Coverage: 52, minDepth: 13 [pilon] Confirmed 621 of 692 bases (89.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4211_length_692_cov_27.849387:1-692 [pilon] Processing NODE_14093_length_243_cov_13.500000:1-243 [pilon] NODE_1116_length_1432_cov_15.940503:1-1432 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 529, Coverage: 31, minDepth: 8 [pilon] Confirmed 1308 of 1432 bases (91.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1116_length_1432_cov_15.940503:1-1432 [pilon] Processing NODE_13067_length_243_cov_22.245902:1-243 [pilon] NODE_2753_length_917_cov_21.959799:1-917 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 407, Coverage: 44, minDepth: 11 [pilon] Confirmed 753 of 917 bases (82.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2753_length_917_cov_21.959799:1-917 [pilon] Processing NODE_4783_length_636_cov_26.023301:1-636 [pilon] NODE_263_length_2303_cov_19.561870:1-2303 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 1079, Coverage: 47, minDepth: 12 [pilon] Confirmed 1916 of 2303 bases (83.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_263_length_2303_cov_19.561870:1-2303 [pilon] Processing NODE_12680_length_243_cov_26.426230:1-243 [pilon] NODE_13521_length_243_cov_18.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13521_length_243_cov_18.155738:1-243 [pilon] Processing NODE_6638_length_495_cov_1.778075:1-495 [pilon] NODE_4469_length_664_cov_14.841621:1-664 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 196, Coverage: 22, minDepth: 6 [pilon] Confirmed 439 of 664 bases (66.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4469_length_664_cov_14.841621:1-664 [pilon] Processing NODE_4826_length_632_cov_20.690802:1-632 [pilon] NODE_504_length_1909_cov_29.802013:1-1909 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 1393, Coverage: 53, minDepth: 13 [pilon] Confirmed 1539 of 1909 bases (80.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_504_length_1909_cov_29.802013:1-1909 [pilon] Processing NODE_5243_length_597_cov_6.243697:1-597 [pilon] NODE_12858_length_243_cov_24.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12858_length_243_cov_24.450820:1-243 [pilon] Processing NODE_13698_length_243_cov_16.426230:1-243 [pilon] NODE_6219_length_523_cov_8.221393:1-523 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 82, Coverage: 10, minDepth: 5 [pilon] Confirmed 293 of 523 bases (56.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6219_length_523_cov_8.221393:1-523 [pilon] Processing NODE_2724_length_924_cov_1.087173:1-924 [pilon] NODE_694_length_1708_cov_22.580970:1-1708 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 926, Coverage: 58, minDepth: 15 [pilon] Confirmed 1524 of 1708 bases (89.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_694_length_1708_cov_22.580970:1-1708 [pilon] Processing NODE_321_length_2187_cov_11.133107:1-2187 [pilon] NODE_5546_length_574_cov_2.984547:1-574 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 38, Coverage: 8, minDepth: 5 [pilon] Confirmed 387 of 574 bases (67.42%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5546_length_574_cov_2.984547:1-574 [pilon] Processing NODE_13377_length_243_cov_19.581967:1-243 [pilon] NODE_4037_length_711_cov_26.149153:1-711 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 332, Coverage: 42, minDepth: 11 [pilon] Confirmed 549 of 711 bases (77.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4037_length_711_cov_26.149153:1-711 [pilon] Processing NODE_6700_length_490_cov_15.918699:1-490 [pilon] NODE_3460_length_790_cov_17.496263:1-790 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 276, Coverage: 34, minDepth: 9 [pilon] Confirmed 524 of 790 bases (66.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3460_length_790_cov_17.496263:1-790 [pilon] Processing NODE_7806_length_427_cov_1.052288:1-427 [pilon] NODE_14499_length_243_cov_10.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14499_length_243_cov_10.311475:1-243 [pilon] Processing NODE_5857_length_551_cov_2.160465:1-551 [pilon] NODE_9074_length_363_cov_15.747934:1-363 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 87, Coverage: 8, minDepth: 5 [pilon] Confirmed 267 of 363 bases (73.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9074_length_363_cov_15.747934:1-363 [pilon] Processing NODE_6118_length_530_cov_48.682152:1-530 [pilon] NODE_8784_length_378_cov_15.828794:1-378 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 103, Coverage: 17, minDepth: 5 [pilon] Confirmed 342 of 378 bases (90.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8784_length_378_cov_15.828794:1-378 [pilon] Processing NODE_3922_length_725_cov_4.937086:1-725 [pilon] NODE_4587_length_654_cov_23.969981:1-654 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 303, Coverage: 30, minDepth: 8 [pilon] Confirmed 543 of 654 bases (83.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4587_length_654_cov_23.969981:1-654 [pilon] Processing NODE_12212_length_243_cov_36.327869:1-243 [pilon] NODE_3823_length_738_cov_14.085900:1-738 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 200, Coverage: 26, minDepth: 7 [pilon] Confirmed 521 of 738 bases (70.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3823_length_738_cov_14.085900:1-738 [pilon] Processing NODE_13016_length_243_cov_22.754098:1-243 [pilon] NODE_2406_length_989_cov_44.900922:1-989 log: [pilon] frags shovill.bam: coverage 98 [pilon] Total Reads: 893, Coverage: 98, minDepth: 25 [pilon] Confirmed 722 of 989 bases (73.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2406_length_989_cov_44.900922:1-989 [pilon] Processing NODE_2464_length_975_cov_1.679157:1-975 [pilon] NODE_12506_length_243_cov_29.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12506_length_243_cov_29.016393:1-243 [pilon] Processing NODE_9186_length_357_cov_34.665254:1-357 [pilon] NODE_2211_length_1031_cov_1.786813:1-1031 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 53, Coverage: 6, minDepth: 5 [pilon] Confirmed 596 of 1031 bases (57.81%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2211_length_1031_cov_1.786813:1-1031 [pilon] Processing NODE_10049_length_323_cov_39.341584:1-323 [pilon] NODE_431_length_1994_cov_15.738922:1-1994 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 744, Coverage: 38, minDepth: 10 [pilon] Confirmed 1872 of 1994 bases (93.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_431_length_1994_cov_15.738922:1-1994 [pilon] Processing NODE_3151_length_842_cov_5.228849:1-842 [pilon] NODE_6767_length_485_cov_12.807692:1-485 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 112, Coverage: 13, minDepth: 5 [pilon] Confirmed 333 of 485 bases (68.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6767_length_485_cov_12.807692:1-485 [pilon] Processing NODE_2392_length_991_cov_25.967816:1-991 [pilon] NODE_1579_length_1227_cov_14.357143:1-1227 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 435, Coverage: 21, minDepth: 5 [pilon] Confirmed 970 of 1227 bases (79.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1579_length_1227_cov_14.357143:1-1227 [pilon] Processing NODE_11695_length_256_cov_16.444444:1-256 [pilon] NODE_14823_length_243_cov_7.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14823_length_243_cov_7.475410:1-243 [pilon] Processing NODE_11280_length_273_cov_11.657895:1-273 [pilon] NODE_3654_length_761_cov_30.667188:1-761 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 473, Coverage: 49, minDepth: 12 [pilon] Confirmed 516 of 761 bases (67.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3654_length_761_cov_30.667188:1-761 [pilon] Processing NODE_181_length_2561_cov_31.781148:1-2561 [pilon] NODE_12175_length_243_cov_37.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12175_length_243_cov_37.721311:1-243 [pilon] Processing NODE_11095_length_279_cov_29.208861:1-279 [pilon] NODE_6638_length_495_cov_1.778075:1-495 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 275 of 495 bases (55.56%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6638_length_495_cov_1.778075:1-495 [pilon] Processing NODE_14631_length_243_cov_9.196721:1-243 [pilon] NODE_14093_length_243_cov_13.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14093_length_243_cov_13.500000:1-243 [pilon] Processing NODE_654_length_1743_cov_1.513564:1-1743 [pilon] NODE_9089_length_362_cov_17.829876:1-362 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 108, Coverage: 11, minDepth: 5 [pilon] Confirmed 262 of 362 bases (72.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9089_length_362_cov_17.829876:1-362 [pilon] Processing NODE_11806_length_252_cov_26.641221:1-252 [pilon] NODE_7617_length_436_cov_64.711111:1-436 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 465, Coverage: 86, minDepth: 22 [pilon] Confirmed 377 of 436 bases (86.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7617_length_436_cov_64.711111:1-436 [pilon] Processing NODE_8063_length_415_cov_1.374150:1-415 [pilon] NODE_12680_length_243_cov_26.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12680_length_243_cov_26.426230:1-243 [pilon] Processing NODE_14448_length_243_cov_10.696721:1-243 [pilon] NODE_4783_length_636_cov_26.023301:1-636 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 322, Coverage: 19, minDepth: 5 [pilon] Confirmed 401 of 636 bases (63.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4783_length_636_cov_26.023301:1-636 [pilon] Processing NODE_1754_length_1159_cov_10.711946:1-1159 [pilon] NODE_4826_length_632_cov_20.690802:1-632 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 254, Coverage: 35, minDepth: 9 [pilon] Confirmed 473 of 632 bases (74.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4826_length_632_cov_20.690802:1-632 [pilon] Processing NODE_12953_length_243_cov_23.393443:1-243 [pilon] NODE_13067_length_243_cov_22.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13067_length_243_cov_22.245902:1-243 [pilon] Processing NODE_2907_length_891_cov_16.587013:1-891 [pilon] NODE_13698_length_243_cov_16.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13698_length_243_cov_16.426230:1-243 [pilon] Processing NODE_12362_length_243_cov_31.803279:1-243 [pilon] NODE_5243_length_597_cov_6.243697:1-597 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 108, Coverage: 16, minDepth: 5 [pilon] Confirmed 384 of 597 bases (64.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5243_length_597_cov_6.243697:1-597 [pilon] Processing NODE_1638_length_1204_cov_3.282548:1-1204 [pilon] NODE_2724_length_924_cov_1.087173:1-924 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 41, Coverage: 5, minDepth: 5 [pilon] Confirmed 380 of 924 bases (41.13%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2724_length_924_cov_1.087173:1-924 [pilon] Processing NODE_11515_length_263_cov_21.471831:1-263 [pilon] NODE_7806_length_427_cov_1.052288:1-427 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 100 of 427 bases (23.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7806_length_427_cov_1.052288:1-427 [pilon] Processing NODE_8321_length_403_cov_26.312057:1-403 [pilon] NODE_5857_length_551_cov_2.160465:1-551 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 241 of 551 bases (43.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5857_length_551_cov_2.160465:1-551 [pilon] Processing NODE_10375_length_309_cov_31.234043:1-309 [pilon] NODE_13377_length_243_cov_19.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13377_length_243_cov_19.581967:1-243 [pilon] Processing NODE_6328_length_515_cov_11.954315:1-515 [pilon] NODE_6700_length_490_cov_15.918699:1-490 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 133, Coverage: 19, minDepth: 5 [pilon] Confirmed 402 of 490 bases (82.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6700_length_490_cov_15.918699:1-490 [pilon] Processing NODE_13443_length_243_cov_18.918033:1-243 [pilon] NODE_321_length_2187_cov_11.133107:1-2187 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 586, Coverage: 28, minDepth: 7 [pilon] Confirmed 1899 of 2187 bases (86.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_321_length_2187_cov_11.133107:1-2187 [pilon] Processing NODE_8362_length_402_cov_17.064057:1-402 [pilon] NODE_2392_length_991_cov_25.967816:1-991 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 499, Coverage: 50, minDepth: 13 [pilon] Confirmed 811 of 991 bases (81.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2392_length_991_cov_25.967816:1-991 [pilon] Processing NODE_12646_length_243_cov_26.901639:1-243 [pilon] NODE_6118_length_530_cov_48.682152:1-530 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 431, Coverage: 76, minDepth: 19 [pilon] Confirmed 470 of 530 bases (88.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6118_length_530_cov_48.682152:1-530 [pilon] Processing NODE_1283_length_1348_cov_1.194784:1-1348 [pilon] NODE_3922_length_725_cov_4.937086:1-725 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 83, Coverage: 14, minDepth: 5 [pilon] Confirmed 453 of 725 bases (62.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3922_length_725_cov_4.937086:1-725 [pilon] Processing NODE_15071_length_236_cov_27.973913:1-236 [pilon] NODE_13016_length_243_cov_22.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12212_length_243_cov_36.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12212_length_243_cov_36.327869:1-243 [pilon] Finished processing NODE_13016_length_243_cov_22.754098:1-243 [pilon] Processing NODE_5278_length_594_cov_20.915433:1-594 [pilon] Processing NODE_13933_length_243_cov_14.655738:1-243 [pilon] NODE_14448_length_243_cov_10.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14448_length_243_cov_10.696721:1-243 [pilon] Processing NODE_3471_length_789_cov_1.408683:1-789 [pilon] NODE_10049_length_323_cov_39.341584:1-323 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 173, Coverage: 23, minDepth: 6 [pilon] Confirmed 280 of 323 bases (86.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10049_length_323_cov_39.341584:1-323 [pilon] Processing NODE_11529_length_263_cov_8.140845:1-263 [pilon] NODE_9186_length_357_cov_34.665254:1-357 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 189, Coverage: 16, minDepth: 5 [pilon] Confirmed 238 of 357 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9186_length_357_cov_34.665254:1-357 [pilon] Processing NODE_9744_length_336_cov_20.618605:1-336 [pilon] NODE_2464_length_975_cov_1.679157:1-975 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 36, Coverage: 5, minDepth: 5 [pilon] Confirmed 513 of 975 bases (52.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2464_length_975_cov_1.679157:1-975 [pilon] Processing NODE_2770_length_914_cov_10.356873:1-914 [pilon] NODE_3151_length_842_cov_5.228849:1-842 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 94, Coverage: 14, minDepth: 5 [pilon] Confirmed 817 of 842 bases (97.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3151_length_842_cov_5.228849:1-842 [pilon] Processing NODE_14087_length_243_cov_13.565574:1-243 [pilon] NODE_181_length_2561_cov_31.781148:1-2561 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 1760, Coverage: 71, minDepth: 18 [pilon] Confirmed 2176 of 2561 bases (84.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_181_length_2561_cov_31.781148:1-2561 [pilon] Processing NODE_12592_length_243_cov_27.663934:1-243 [pilon] NODE_11695_length_256_cov_16.444444:1-256 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 55, Coverage: 3, minDepth: 5 [pilon] Confirmed 95 of 256 bases (37.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11695_length_256_cov_16.444444:1-256 [pilon] Processing NODE_10696_length_297_cov_38.960227:1-297 [pilon] NODE_2907_length_891_cov_16.587013:1-891 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 327, Coverage: 47, minDepth: 12 [pilon] Confirmed 679 of 891 bases (76.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2907_length_891_cov_16.587013:1-891 [pilon] Processing NODE_10051_length_323_cov_29.064356:1-323 [pilon] NODE_11095_length_279_cov_29.208861:1-279 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 106, Coverage: 8, minDepth: 5 [pilon] Confirmed 180 of 279 bases (64.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11095_length_279_cov_29.208861:1-279 [pilon] Processing NODE_12071_length_245_cov_7.838710:1-245 [pilon] NODE_11280_length_273_cov_11.657895:1-273 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 36, Coverage: 5, minDepth: 5 [pilon] Confirmed 132 of 273 bases (48.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11280_length_273_cov_11.657895:1-273 [pilon] Processing NODE_4556_length_657_cov_3.852612:1-657 [pilon] NODE_8063_length_415_cov_1.374150:1-415 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 33, Coverage: 3, minDepth: 5 [pilon] Confirmed 115 of 415 bases (27.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8063_length_415_cov_1.374150:1-415 [pilon] Processing NODE_1241_length_1369_cov_26.016026:1-1369 [pilon] NODE_14631_length_243_cov_9.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14631_length_243_cov_9.196721:1-243 [pilon] Processing NODE_6490_length_504_cov_13.407311:1-504 [pilon] NODE_654_length_1743_cov_1.513564:1-1743 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 68, Coverage: 5, minDepth: 5 [pilon] Confirmed 477 of 1743 bases (27.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_654_length_1743_cov_1.513564:1-1743 [pilon] Processing NODE_13939_length_243_cov_14.590164:1-243 [pilon] NODE_11806_length_252_cov_26.641221:1-252 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 69, Coverage: 10, minDepth: 5 [pilon] Confirmed 193 of 252 bases (76.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11806_length_252_cov_26.641221:1-252 [pilon] Processing NODE_5209_length_601_cov_0.556250:1-601 [pilon] NODE_12953_length_243_cov_23.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12953_length_243_cov_23.393443:1-243 [pilon] Processing NODE_4834_length_632_cov_2.066536:1-632 [pilon] NODE_1754_length_1159_cov_10.711946:1-1159 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 319, Coverage: 30, minDepth: 8 [pilon] Confirmed 810 of 1159 bases (69.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1754_length_1159_cov_10.711946:1-1159 [pilon] Processing NODE_6812_length_482_cov_34.706371:1-482 [pilon] NODE_12362_length_243_cov_31.803279:1-243 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 81, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12362_length_243_cov_31.803279:1-243 [pilon] Processing NODE_10354_length_311_cov_19.536842:1-311 [pilon] NODE_1638_length_1204_cov_3.282548:1-1204 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 90, Coverage: 9, minDepth: 5 [pilon] Confirmed 861 of 1204 bases (71.51%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1638_length_1204_cov_3.282548:1-1204 [pilon] Processing NODE_3104_length_851_cov_2.908219:1-851 [pilon] NODE_11515_length_263_cov_21.471831:1-263 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 66, Coverage: 8, minDepth: 5 [pilon] Confirmed 194 of 263 bases (73.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11515_length_263_cov_21.471831:1-263 [pilon] Processing NODE_2811_length_907_cov_20.314249:1-907 [pilon] NODE_8321_length_403_cov_26.312057:1-403 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 174, Coverage: 22, minDepth: 6 [pilon] Confirmed 262 of 403 bases (65.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8321_length_403_cov_26.312057:1-403 [pilon] Processing NODE_11376_length_268_cov_17.197279:1-268 [pilon] NODE_6328_length_515_cov_11.954315:1-515 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 113, Coverage: 13, minDepth: 5 [pilon] Confirmed 273 of 515 bases (53.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6328_length_515_cov_11.954315:1-515 [pilon] Processing NODE_13679_length_243_cov_16.672131:1-243 [pilon] NODE_10375_length_309_cov_31.234043:1-309 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 99, Coverage: 11, minDepth: 5 [pilon] Confirmed 223 of 309 bases (72.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10375_length_309_cov_31.234043:1-309 [pilon] Processing NODE_13627_length_243_cov_17.221311:1-243 [pilon] NODE_13443_length_243_cov_18.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13443_length_243_cov_18.918033:1-243 [pilon] Processing NODE_4749_length_639_cov_19.623552:1-639 [pilon] NODE_12646_length_243_cov_26.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12646_length_243_cov_26.901639:1-243 [pilon] Processing NODE_13180_length_243_cov_21.278689:1-243 [pilon] NODE_8362_length_402_cov_17.064057:1-402 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 122, Coverage: 18, minDepth: 5 [pilon] Confirmed 343 of 402 bases (85.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8362_length_402_cov_17.064057:1-402 [pilon] Processing NODE_10970_length_285_cov_19.085366:1-285 [pilon] NODE_1283_length_1348_cov_1.194784:1-1348 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 49, Coverage: 4, minDepth: 5 [pilon] Confirmed 626 of 1348 bases (46.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1283_length_1348_cov_1.194784:1-1348 [pilon] Processing NODE_5136_length_607_cov_1.983539:1-607 [pilon] NODE_13933_length_243_cov_14.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13933_length_243_cov_14.655738:1-243 [pilon] Processing NODE_14989_length_243_cov_5.590164:1-243 [pilon] NODE_15071_length_236_cov_27.973913:1-236 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 75, Coverage: 4, minDepth: 5 [pilon] Confirmed 114 of 236 bases (48.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15071_length_236_cov_27.973913:1-236 [pilon] Processing NODE_3864_length_732_cov_25.615385:1-732 [pilon] NODE_11529_length_263_cov_8.140845:1-263 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 28, Coverage: 3, minDepth: 5 [pilon] Confirmed 96 of 263 bases (36.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11529_length_263_cov_8.140845:1-263 [pilon] Processing NODE_12239_length_243_cov_35.040984:1-243 [pilon] NODE_3471_length_789_cov_1.408683:1-789 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 38, Coverage: 6, minDepth: 5 [pilon] Confirmed 502 of 789 bases (63.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3471_length_789_cov_1.408683:1-789 [pilon] Processing NODE_6884_length_479_cov_0.896648:1-479 [pilon] NODE_9744_length_336_cov_20.618605:1-336 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 77, Coverage: 3, minDepth: 5 [pilon] Confirmed 125 of 336 bases (37.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9744_length_336_cov_20.618605:1-336 [pilon] Processing NODE_13274_length_243_cov_20.393443:1-243 [pilon] NODE_5278_length_594_cov_20.915433:1-594 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 194, Coverage: 14, minDepth: 5 [pilon] Confirmed 355 of 594 bases (59.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5278_length_594_cov_20.915433:1-594 [pilon] Processing NODE_1551_length_1240_cov_2.699732:1-1240 [pilon] NODE_10051_length_323_cov_29.064356:1-323 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 93, Coverage: 6, minDepth: 5 [pilon] Confirmed 163 of 323 bases (50.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10051_length_323_cov_29.064356:1-323 [pilon] Processing NODE_14111_length_243_cov_13.401639:1-243 [pilon] NODE_14087_length_243_cov_13.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14087_length_243_cov_13.565574:1-243 [pilon] Processing NODE_9479_length_347_cov_6.960177:1-347 [pilon] NODE_10354_length_311_cov_19.536842:1-311 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 80, Coverage: 6, minDepth: 5 [pilon] Confirmed 155 of 311 bases (49.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10354_length_311_cov_19.536842:1-311 [pilon] Processing NODE_7558_length_440_cov_40.485893:1-440 [pilon] NODE_12592_length_243_cov_27.663934:1-243 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 69, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12592_length_243_cov_27.663934:1-243 [pilon] Processing NODE_13120_length_243_cov_21.811475:1-243 [pilon] NODE_4556_length_657_cov_3.852612:1-657 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 56, Coverage: 11, minDepth: 5 [pilon] Confirmed 492 of 657 bases (74.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4556_length_657_cov_3.852612:1-657 [pilon] Processing NODE_1318_length_1333_cov_1.670792:1-1333 [pilon] NODE_12071_length_245_cov_7.838710:1-245 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 245 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12071_length_245_cov_7.838710:1-245 [pilon] Processing NODE_543_length_1864_cov_15.536431:1-1864 [pilon] NODE_13939_length_243_cov_14.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13939_length_243_cov_14.590164:1-243 [pilon] Processing NODE_5319_length_591_cov_10.334043:1-591 [pilon] NODE_6812_length_482_cov_34.706371:1-482 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 310, Coverage: 58, minDepth: 15 [pilon] Confirmed 383 of 482 bases (79.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6812_length_482_cov_34.706371:1-482 [pilon] Processing NODE_13533_length_243_cov_18.040984:1-243 [pilon] NODE_10696_length_297_cov_38.960227:1-297 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 135, Coverage: 12, minDepth: 5 [pilon] Confirmed 237 of 297 bases (79.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10696_length_297_cov_38.960227:1-297 [pilon] Processing NODE_1559_length_1233_cov_25.262590:1-1233 [pilon] NODE_6490_length_504_cov_13.407311:1-504 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 129, Coverage: 9, minDepth: 5 [pilon] Confirmed 308 of 504 bases (61.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6490_length_504_cov_13.407311:1-504 [pilon] Processing NODE_14020_length_243_cov_14.032787:1-243 [pilon] NODE_4834_length_632_cov_2.066536:1-632 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 341 of 632 bases (53.96%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4834_length_632_cov_2.066536:1-632 [pilon] Processing NODE_2820_length_906_cov_16.952866:1-906 [pilon] NODE_5209_length_601_cov_0.556250:1-601 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 217 of 601 bases (36.11%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5209_length_601_cov_0.556250:1-601 [pilon] Processing NODE_7789_length_428_cov_11.162866:1-428 [pilon] NODE_1241_length_1369_cov_26.016026:1-1369 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 780, Coverage: 46, minDepth: 12 [pilon] Confirmed 1203 of 1369 bases (87.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1241_length_1369_cov_26.016026:1-1369 [pilon] Processing NODE_5918_length_546_cov_19.134118:1-546 [pilon] NODE_3104_length_851_cov_2.908219:1-851 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 63, Coverage: 9, minDepth: 5 [pilon] Confirmed 516 of 851 bases (60.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3104_length_851_cov_2.908219:1-851 [pilon] Processing NODE_4553_length_657_cov_10.139925:1-657 [pilon] NODE_2770_length_914_cov_10.356873:1-914 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 208, Coverage: 16, minDepth: 5 [pilon] Confirmed 767 of 914 bases (83.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2770_length_914_cov_10.356873:1-914 [pilon] Processing NODE_5727_length_561_cov_16.843182:1-561 [pilon] NODE_2811_length_907_cov_20.314249:1-907 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 383, Coverage: 31, minDepth: 8 [pilon] Confirmed 726 of 907 bases (80.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2811_length_907_cov_20.314249:1-907 [pilon] Processing NODE_5716_length_562_cov_7.802721:1-562 [pilon] NODE_13679_length_243_cov_16.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13679_length_243_cov_16.672131:1-243 [pilon] Processing NODE_4336_length_677_cov_10.832734:1-677 [pilon] NODE_14989_length_243_cov_5.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14989_length_243_cov_5.590164:1-243 [pilon] Processing NODE_8387_length_400_cov_39.817204:1-400 [pilon] NODE_13627_length_243_cov_17.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13627_length_243_cov_17.221311:1-243 [pilon] Processing NODE_7_length_6286_cov_26.557664:1-6286 [pilon] NODE_11376_length_268_cov_17.197279:1-268 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 45, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 268 bases (55.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11376_length_268_cov_17.197279:1-268 [pilon] Processing NODE_888_length_1569_cov_10.138122:1-1569 [pilon] NODE_4749_length_639_cov_19.623552:1-639 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 229, Coverage: 30, minDepth: 8 [pilon] Confirmed 452 of 639 bases (70.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4749_length_639_cov_19.623552:1-639 [pilon] Processing NODE_12152_length_243_cov_39.155738:1-243 [pilon] NODE_13180_length_243_cov_21.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13180_length_243_cov_21.278689:1-243 [pilon] Processing NODE_6184_length_525_cov_52.735149:1-525 [pilon] NODE_10970_length_285_cov_19.085366:1-285 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 74, Coverage: 9, minDepth: 5 [pilon] Confirmed 211 of 285 bases (74.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10970_length_285_cov_19.085366:1-285 [pilon] Processing NODE_5982_length_542_cov_31.814727:1-542 [pilon] NODE_5136_length_607_cov_1.983539:1-607 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 434 of 607 bases (71.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5136_length_607_cov_1.983539:1-607 [pilon] Processing NODE_15089_length_229_cov_5.796296:1-229 [pilon] NODE_13274_length_243_cov_20.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13274_length_243_cov_20.393443:1-243 [pilon] Processing NODE_7930_length_421_cov_26.250000:1-421 [pilon] NODE_6884_length_479_cov_0.896648:1-479 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 33 of 479 bases (6.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6884_length_479_cov_0.896648:1-479 [pilon] Processing NODE_9785_length_335_cov_16.953271:1-335 [pilon] NODE_12239_length_243_cov_35.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12239_length_243_cov_35.040984:1-243 [pilon] Processing NODE_3349_length_806_cov_2.099270:1-806 [pilon] NODE_3864_length_732_cov_25.615385:1-732 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 349, Coverage: 39, minDepth: 10 [pilon] Confirmed 606 of 732 bases (82.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3864_length_732_cov_25.615385:1-732 [pilon] Processing NODE_4629_length_650_cov_0.971645:1-650 [pilon] NODE_7558_length_440_cov_40.485893:1-440 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 315, Coverage: 54, minDepth: 14 [pilon] Confirmed 372 of 440 bases (84.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7558_length_440_cov_40.485893:1-440 [pilon] Processing NODE_5936_length_545_cov_31.084906:1-545 [pilon] NODE_1551_length_1240_cov_2.699732:1-1240 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 98, Coverage: 10, minDepth: 5 [pilon] Confirmed 702 of 1240 bases (56.61%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1551_length_1240_cov_2.699732:1-1240 [pilon] Processing NODE_14409_length_243_cov_11.016393:1-243 [pilon] NODE_14111_length_243_cov_13.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14111_length_243_cov_13.401639:1-243 [pilon] Processing NODE_12674_length_243_cov_26.500000:1-243 [pilon] NODE_9479_length_347_cov_6.960177:1-347 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 40, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 347 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9479_length_347_cov_6.960177:1-347 [pilon] Processing NODE_9874_length_330_cov_30.401914:1-330 [pilon] NODE_13120_length_243_cov_21.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13120_length_243_cov_21.811475:1-243 [pilon] Processing NODE_10942_length_286_cov_16.872727:1-286 [pilon] NODE_5319_length_591_cov_10.334043:1-591 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 176, Coverage: 22, minDepth: 6 [pilon] Confirmed 365 of 591 bases (61.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5319_length_591_cov_10.334043:1-591 [pilon] Processing NODE_1923_length_1106_cov_18.587817:1-1106 [pilon] NODE_13533_length_243_cov_18.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13533_length_243_cov_18.040984:1-243 [pilon] Processing NODE_14942_length_243_cov_6.237705:1-243 [pilon] NODE_5716_length_562_cov_7.802721:1-562 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 78, Coverage: 12, minDepth: 5 [pilon] Confirmed 371 of 562 bases (66.01%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5716_length_562_cov_7.802721:1-562 [pilon] Processing NODE_5234_length_598_cov_1.939203:1-598 [pilon] NODE_1318_length_1333_cov_1.670792:1-1333 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 60, Coverage: 6, minDepth: 5 [pilon] Confirmed 847 of 1333 bases (63.54%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1318_length_1333_cov_1.670792:1-1333 [pilon] Processing NODE_1118_length_1431_cov_17.084733:1-1431 [pilon] NODE_543_length_1864_cov_15.536431:1-1864 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 640, Coverage: 36, minDepth: 9 [pilon] Confirmed 1550 of 1864 bases (83.15%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_543_length_1864_cov_15.536431:1-1864 [pilon] Processing NODE_10734_length_297_cov_5.664773:1-297 [pilon] NODE_14020_length_243_cov_14.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14020_length_243_cov_14.032787:1-243 [pilon] Processing NODE_6801_length_483_cov_13.240331:1-483 [pilon] NODE_7789_length_428_cov_11.162866:1-428 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 85, Coverage: 9, minDepth: 5 [pilon] Confirmed 327 of 428 bases (76.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7789_length_428_cov_11.162866:1-428 [pilon] Processing NODE_10703_length_297_cov_26.210227:1-297 [pilon] NODE_5918_length_546_cov_19.134118:1-546 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 174, Coverage: 28, minDepth: 7 [pilon] Confirmed 394 of 546 bases (72.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5918_length_546_cov_19.134118:1-546 [pilon] Processing NODE_1658_length_1197_cov_14.975836:1-1197 [pilon] NODE_1559_length_1233_cov_25.262590:1-1233 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 712, Coverage: 39, minDepth: 10 [pilon] Confirmed 966 of 1233 bases (78.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1559_length_1233_cov_25.262590:1-1233 [pilon] Processing NODE_5311_length_592_cov_1.002123:1-592 [pilon] NODE_2820_length_906_cov_16.952866:1-906 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 323, Coverage: 28, minDepth: 7 [pilon] Confirmed 711 of 906 bases (78.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2820_length_906_cov_16.952866:1-906 [pilon] Processing NODE_13099_length_243_cov_22.000000:1-243 [pilon] NODE_8387_length_400_cov_39.817204:1-400 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 261, Coverage: 46, minDepth: 12 [pilon] Confirmed 355 of 400 bases (88.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8387_length_400_cov_39.817204:1-400 [pilon] Processing NODE_9202_length_357_cov_21.508475:1-357 [pilon] NODE_4553_length_657_cov_10.139925:1-657 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 181, Coverage: 25, minDepth: 6 [pilon] Confirmed 365 of 657 bases (55.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4553_length_657_cov_10.139925:1-657 [pilon] Processing NODE_11440_length_266_cov_10.593103:1-266 [pilon] NODE_5727_length_561_cov_16.843182:1-561 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 170, Coverage: 27, minDepth: 7 [pilon] Confirmed 425 of 561 bases (75.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5727_length_561_cov_16.843182:1-561 [pilon] Processing NODE_2888_length_895_cov_4.187339:1-895 [pilon] NODE_12152_length_243_cov_39.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12152_length_243_cov_39.155738:1-243 [pilon] Processing NODE_3507_length_782_cov_24.098336:1-782 [pilon] NODE_4336_length_677_cov_10.832734:1-677 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 120, Coverage: 18, minDepth: 5 [pilon] Confirmed 429 of 677 bases (63.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4336_length_677_cov_10.832734:1-677 [pilon] Processing NODE_5059_length_614_cov_1.945233:1-614 [pilon] NODE_888_length_1569_cov_10.138122:1-1569 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 347, Coverage: 28, minDepth: 7 [pilon] Confirmed 1255 of 1569 bases (79.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_888_length_1569_cov_10.138122:1-1569 [pilon] Processing NODE_8654_length_384_cov_33.676806:1-384 [pilon] NODE_6184_length_525_cov_52.735149:1-525 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 597, Coverage: 84, minDepth: 21 [pilon] Confirmed 464 of 525 bases (88.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6184_length_525_cov_52.735149:1-525 [pilon] Processing NODE_8816_length_376_cov_15.470588:1-376 [pilon] NODE_5982_length_542_cov_31.814727:1-542 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 339, Coverage: 35, minDepth: 9 [pilon] Confirmed 338 of 542 bases (62.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5982_length_542_cov_31.814727:1-542 [pilon] Processing NODE_2806_length_908_cov_25.789072:1-908 [pilon] NODE_5936_length_545_cov_31.084906:1-545 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 332, Coverage: 52, minDepth: 13 [pilon] Confirmed 480 of 545 bases (88.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5936_length_545_cov_31.084906:1-545 [pilon] Processing NODE_6977_length_473_cov_14.247159:1-473 [pilon] NODE_15089_length_229_cov_5.796296:1-229 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 229 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15089_length_229_cov_5.796296:1-229 [pilon] Processing NODE_1490_length_1265_cov_16.622378:1-1265 [pilon] NODE_5234_length_598_cov_1.939203:1-598 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 256 of 598 bases (42.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5234_length_598_cov_1.939203:1-598 [pilon] Processing NODE_1597_length_1218_cov_45.597083:1-1218 [pilon] NODE_9785_length_335_cov_16.953271:1-335 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 76, Coverage: 4, minDepth: 5 [pilon] Confirmed 148 of 335 bases (44.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9785_length_335_cov_16.953271:1-335 [pilon] Processing NODE_8907_length_371_cov_33.600000:1-371 [pilon] NODE_7930_length_421_cov_26.250000:1-421 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 168, Coverage: 31, minDepth: 8 [pilon] Confirmed 308 of 421 bases (73.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7930_length_421_cov_26.250000:1-421 [pilon] Processing NODE_14529_length_243_cov_10.024590:1-243 [pilon] NODE_3349_length_806_cov_2.099270:1-806 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 40, Coverage: 6, minDepth: 5 [pilon] Confirmed 443 of 806 bases (54.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3349_length_806_cov_2.099270:1-806 [pilon] NODE_14409_length_243_cov_11.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14409_length_243_cov_11.016393:1-243 [pilon] Processing NODE_14279_length_243_cov_12.000000:1-243 [pilon] Processing NODE_13557_length_243_cov_17.836066:1-243 [pilon] NODE_4629_length_650_cov_0.971645:1-650 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 288 of 650 bases (44.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4629_length_650_cov_0.971645:1-650 [pilon] Processing NODE_13958_length_243_cov_14.459016:1-243 [pilon] NODE_9202_length_357_cov_21.508475:1-357 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 55, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 357 bases (36.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9202_length_357_cov_21.508475:1-357 [pilon] Processing NODE_3330_length_810_cov_11.791001:1-810 [pilon] NODE_12674_length_243_cov_26.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12674_length_243_cov_26.500000:1-243 [pilon] Processing NODE_6417_length_510_cov_0.557841:1-510 [pilon] NODE_10942_length_286_cov_16.872727:1-286 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 56, Coverage: 5, minDepth: 5 [pilon] Confirmed 187 of 286 bases (65.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10942_length_286_cov_16.872727:1-286 [pilon] Processing NODE_12971_length_243_cov_23.245902:1-243 [pilon] NODE_9874_length_330_cov_30.401914:1-330 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 101, Coverage: 5, minDepth: 5 [pilon] Confirmed 142 of 330 bases (43.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9874_length_330_cov_30.401914:1-330 [pilon] Processing NODE_10881_length_288_cov_36.413174:1-288 [pilon] NODE_1923_length_1106_cov_18.587817:1-1106 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 426, Coverage: 36, minDepth: 9 [pilon] Confirmed 896 of 1106 bases (81.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1923_length_1106_cov_18.587817:1-1106 [pilon] Processing NODE_2444_length_979_cov_33.139860:1-979 [pilon] NODE_14942_length_243_cov_6.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14942_length_243_cov_6.237705:1-243 [pilon] NODE_10734_length_297_cov_5.664773:1-297 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 24, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10734_length_297_cov_5.664773:1-297 [pilon] Processing NODE_4495_length_662_cov_12.887246:1-662 [pilon] Processing NODE_5575_length_572_cov_34.869180:1-572 [pilon] NODE_7_length_6286_cov_26.557664:1-6286 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 3728, Coverage: 73, minDepth: 18 [pilon] Confirmed 6004 of 6286 bases (95.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7_length_6286_cov_26.557664:1-6286 [pilon] Processing NODE_1475_length_1272_cov_41.282363:1-1272 [pilon] NODE_13099_length_243_cov_22.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13099_length_243_cov_22.000000:1-243 [pilon] Processing NODE_3364_length_803_cov_0.873900:1-803 [pilon] NODE_1118_length_1431_cov_17.084733:1-1431 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 544, Coverage: 23, minDepth: 6 [pilon] Confirmed 1269 of 1431 bases (88.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1118_length_1431_cov_17.084733:1-1431 [pilon] Processing NODE_11339_length_270_cov_16.771812:1-270 [pilon] NODE_6801_length_483_cov_13.240331:1-483 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 108, Coverage: 12, minDepth: 5 [pilon] Confirmed 307 of 483 bases (63.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6801_length_483_cov_13.240331:1-483 [pilon] Processing NODE_2205_length_1032_cov_12.228321:1-1032 [pilon] NODE_5311_length_592_cov_1.002123:1-592 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 9 of 592 bases (1.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5311_length_592_cov_1.002123:1-592 [pilon] Processing NODE_12437_length_243_cov_30.213115:1-243 [pilon] NODE_11440_length_266_cov_10.593103:1-266 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 44, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 266 bases (48.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11440_length_266_cov_10.593103:1-266 [pilon] Processing NODE_4059_length_710_cov_1.572156:1-710 [pilon] NODE_1658_length_1197_cov_14.975836:1-1197 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 429, Coverage: 43, minDepth: 11 [pilon] Confirmed 964 of 1197 bases (80.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1658_length_1197_cov_14.975836:1-1197 [pilon] Processing NODE_10966_length_285_cov_20.219512:1-285 [pilon] NODE_2888_length_895_cov_4.187339:1-895 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 79, Coverage: 11, minDepth: 5 [pilon] Confirmed 685 of 895 bases (76.54%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2888_length_895_cov_4.187339:1-895 [pilon] Processing NODE_9783_length_335_cov_18.359813:1-335 [pilon] NODE_10703_length_297_cov_26.210227:1-297 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 112, Coverage: 14, minDepth: 5 [pilon] Confirmed 228 of 297 bases (76.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10703_length_297_cov_26.210227:1-297 [pilon] Processing NODE_10006_length_325_cov_8.000000:1-325 [pilon] NODE_8654_length_384_cov_33.676806:1-384 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 198, Coverage: 35, minDepth: 9 [pilon] Confirmed 312 of 384 bases (81.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8654_length_384_cov_33.676806:1-384 [pilon] Processing NODE_2239_length_1022_cov_25.743618:1-1022 [pilon] NODE_3507_length_782_cov_24.098336:1-782 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 456, Coverage: 59, minDepth: 15 [pilon] Confirmed 644 of 782 bases (82.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3507_length_782_cov_24.098336:1-782 [pilon] Processing NODE_7760_length_429_cov_18.977273:1-429 [pilon] NODE_3330_length_810_cov_11.791001:1-810 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 207, Coverage: 18, minDepth: 5 [pilon] Confirmed 582 of 810 bases (71.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3330_length_810_cov_11.791001:1-810 [pilon] Processing NODE_10705_length_297_cov_24.329545:1-297 [pilon] NODE_5059_length_614_cov_1.945233:1-614 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 379 of 614 bases (61.73%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5059_length_614_cov_1.945233:1-614 [pilon] Processing NODE_15107_length_217_cov_6.197917:1-217 [pilon] NODE_8816_length_376_cov_15.470588:1-376 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 94, Coverage: 15, minDepth: 5 [pilon] Confirmed 252 of 376 bases (67.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8816_length_376_cov_15.470588:1-376 [pilon] Processing NODE_14412_length_243_cov_10.991803:1-243 [pilon] NODE_6977_length_473_cov_14.247159:1-473 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 127, Coverage: 15, minDepth: 5 [pilon] Confirmed 312 of 473 bases (65.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6977_length_473_cov_14.247159:1-473 [pilon] Processing NODE_11667_length_258_cov_9.912409:1-258 [pilon] NODE_14529_length_243_cov_10.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14529_length_243_cov_10.024590:1-243 [pilon] Processing NODE_10815_length_291_cov_34.252941:1-291 [pilon] NODE_14279_length_243_cov_12.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14279_length_243_cov_12.000000:1-243 [pilon] Processing NODE_9591_length_342_cov_15.692308:1-342 [pilon] NODE_1490_length_1265_cov_16.622378:1-1265 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 409, Coverage: 34, minDepth: 9 [pilon] Confirmed 1159 of 1265 bases (91.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1490_length_1265_cov_16.622378:1-1265 [pilon] Processing NODE_6543_length_501_cov_1.234211:1-501 [pilon] NODE_2806_length_908_cov_25.789072:1-908 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 473, Coverage: 46, minDepth: 12 [pilon] Confirmed 755 of 908 bases (83.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2806_length_908_cov_25.789072:1-908 [pilon] Processing NODE_440_length_1979_cov_24.081270:1-1979 [pilon] NODE_2444_length_979_cov_33.139860:1-979 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 725, Coverage: 51, minDepth: 13 [pilon] Confirmed 714 of 979 bases (72.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2444_length_979_cov_33.139860:1-979 [pilon] Processing NODE_3647_length_762_cov_15.410296:1-762 [pilon] NODE_13958_length_243_cov_14.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13958_length_243_cov_14.459016:1-243 [pilon] Processing NODE_12004_length_246_cov_17.576000:1-246 [pilon] NODE_8907_length_371_cov_33.600000:1-371 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 177, Coverage: 21, minDepth: 5 [pilon] Confirmed 277 of 371 bases (74.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8907_length_371_cov_33.600000:1-371 [pilon] Processing NODE_4084_length_707_cov_8.755973:1-707 [pilon] NODE_6417_length_510_cov_0.557841:1-510 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 141 of 510 bases (27.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6417_length_510_cov_0.557841:1-510 [pilon] Processing NODE_4108_length_704_cov_12.190395:1-704 [pilon] NODE_13557_length_243_cov_17.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13557_length_243_cov_17.836066:1-243 [pilon] Processing NODE_7741_length_430_cov_13.906149:1-430 [pilon] NODE_1597_length_1218_cov_45.597083:1-1218 log: [pilon] frags shovill.bam: coverage 102 [pilon] Total Reads: 1106, Coverage: 102, minDepth: 26 [pilon] Confirmed 1122 of 1218 bases (92.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1597_length_1218_cov_45.597083:1-1218 [pilon] Processing NODE_8806_length_377_cov_11.109375:1-377 [pilon] NODE_12971_length_243_cov_23.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12971_length_243_cov_23.245902:1-243 [pilon] Processing NODE_9559_length_343_cov_51.720721:1-343 [pilon] NODE_10881_length_288_cov_36.413174:1-288 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 153, Coverage: 9, minDepth: 5 [pilon] Confirmed 193 of 288 bases (67.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10881_length_288_cov_36.413174:1-288 [pilon] Processing NODE_5892_length_548_cov_27.220141:1-548 [pilon] NODE_1475_length_1272_cov_41.282363:1-1272 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 982, Coverage: 41, minDepth: 10 [pilon] Confirmed 1140 of 1272 bases (89.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1475_length_1272_cov_41.282363:1-1272 [pilon] Processing NODE_5402_length_584_cov_12.552916:1-584 [pilon] NODE_11339_length_270_cov_16.771812:1-270 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 57, Coverage: 2, minDepth: 5 [pilon] Confirmed 7 of 270 bases (2.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11339_length_270_cov_16.771812:1-270 [pilon] Processing NODE_8211_length_408_cov_8.432056:1-408 [pilon] NODE_5575_length_572_cov_34.869180:1-572 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 357, Coverage: 51, minDepth: 13 [pilon] Confirmed 514 of 572 bases (89.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5575_length_572_cov_34.869180:1-572 [pilon] Processing NODE_14353_length_243_cov_11.442623:1-243 [pilon] NODE_3364_length_803_cov_0.873900:1-803 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 21, Coverage: 3, minDepth: 5 [pilon] Confirmed 134 of 803 bases (16.69%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3364_length_803_cov_0.873900:1-803 [pilon] NODE_2205_length_1032_cov_12.228321:1-1032 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 310, Coverage: 38, minDepth: 10 [pilon] Confirmed 759 of 1032 bases (73.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2205_length_1032_cov_12.228321:1-1032 [pilon] Processing NODE_1409_length_1295_cov_17.569847:1-1295 [pilon] NODE_4495_length_662_cov_12.887246:1-662 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 244, Coverage: 19, minDepth: 5 [pilon] Confirmed 619 of 662 bases (93.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4495_length_662_cov_12.887246:1-662 [pilon] Processing NODE_12573_length_243_cov_27.950820:1-243 [pilon] Processing NODE_2711_length_926_cov_46.787578:1-926 [pilon] NODE_12437_length_243_cov_30.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12437_length_243_cov_30.213115:1-243 [pilon] Processing NODE_8918_length_370_cov_15.827309:1-370 [pilon] NODE_4059_length_710_cov_1.572156:1-710 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 31, Coverage: 5, minDepth: 5 [pilon] Confirmed 361 of 710 bases (50.85%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4059_length_710_cov_1.572156:1-710 [pilon] Processing NODE_9044_length_364_cov_13.238683:1-364 [pilon] NODE_10966_length_285_cov_20.219512:1-285 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 57, Coverage: 4, minDepth: 5 [pilon] Confirmed 116 of 285 bases (40.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10966_length_285_cov_20.219512:1-285 [pilon] Processing NODE_4925_length_624_cov_14.003976:1-624 [pilon] NODE_9783_length_335_cov_18.359813:1-335 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 93, Coverage: 15, minDepth: 5 [pilon] Confirmed 231 of 335 bases (68.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9783_length_335_cov_18.359813:1-335 [pilon] Processing NODE_11836_length_252_cov_11.541985:1-252 [pilon] NODE_10705_length_297_cov_24.329545:1-297 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 85, Coverage: 10, minDepth: 5 [pilon] Confirmed 233 of 297 bases (78.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10705_length_297_cov_24.329545:1-297 [pilon] Processing NODE_8079_length_414_cov_18.477816:1-414 [pilon] NODE_10006_length_325_cov_8.000000:1-325 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 325 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10006_length_325_cov_8.000000:1-325 [pilon] Processing NODE_3493_length_785_cov_1.631024:1-785 [pilon] NODE_7760_length_429_cov_18.977273:1-429 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 145, Coverage: 10, minDepth: 5 [pilon] Confirmed 189 of 429 bases (44.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7760_length_429_cov_18.977273:1-429 [pilon] Processing NODE_5590_length_571_cov_9.357778:1-571 [pilon] NODE_15107_length_217_cov_6.197917:1-217 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 217 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15107_length_217_cov_6.197917:1-217 [pilon] Processing NODE_5045_length_615_cov_8.524291:1-615 [pilon] NODE_2239_length_1022_cov_25.743618:1-1022 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 572, Coverage: 40, minDepth: 10 [pilon] Confirmed 817 of 1022 bases (79.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2239_length_1022_cov_25.743618:1-1022 [pilon] Processing NODE_8919_length_370_cov_12.485944:1-370 [pilon] NODE_11667_length_258_cov_9.912409:1-258 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 25, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11667_length_258_cov_9.912409:1-258 [pilon] Processing NODE_2312_length_1007_cov_28.597065:1-1007 [pilon] NODE_5402_length_584_cov_12.552916:1-584 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 150, Coverage: 12, minDepth: 5 [pilon] Confirmed 386 of 584 bases (66.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5402_length_584_cov_12.552916:1-584 [pilon] Processing NODE_7007_length_471_cov_2.185714:1-471 [pilon] NODE_14412_length_243_cov_10.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14412_length_243_cov_10.991803:1-243 [pilon] Processing NODE_7695_length_432_cov_33.967846:1-432 [pilon] NODE_6543_length_501_cov_1.234211:1-501 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 141 of 501 bases (28.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6543_length_501_cov_1.234211:1-501 [pilon] Processing NODE_4048_length_710_cov_45.847199:1-710 [pilon] NODE_4084_length_707_cov_8.755973:1-707 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 122, Coverage: 17, minDepth: 5 [pilon] Confirmed 562 of 707 bases (79.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4084_length_707_cov_8.755973:1-707 [pilon] Processing NODE_8162_length_410_cov_45.903114:1-410 [pilon] NODE_3647_length_762_cov_15.410296:1-762 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 277, Coverage: 27, minDepth: 7 [pilon] Confirmed 549 of 762 bases (72.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3647_length_762_cov_15.410296:1-762 [pilon] Processing NODE_5464_length_580_cov_0.797386:1-580 [pilon] NODE_12004_length_246_cov_17.576000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 52, Coverage: 3, minDepth: 5 [pilon] Confirmed 46 of 246 bases (18.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12004_length_246_cov_17.576000:1-246 [pilon] Processing NODE_10706_length_297_cov_23.903409:1-297 [pilon] NODE_9591_length_342_cov_15.692308:1-342 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 59, Coverage: 3, minDepth: 5 [pilon] Confirmed 109 of 342 bases (31.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9591_length_342_cov_15.692308:1-342 [pilon] Processing NODE_11617_length_259_cov_7.601449:1-259 [pilon] NODE_10815_length_291_cov_34.252941:1-291 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 110, Coverage: 9, minDepth: 5 [pilon] Confirmed 192 of 291 bases (65.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10815_length_291_cov_34.252941:1-291 [pilon] Processing NODE_9476_length_347_cov_14.004425:1-347 [pilon] NODE_4108_length_704_cov_12.190395:1-704 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 275, Coverage: 25, minDepth: 6 [pilon] Confirmed 554 of 704 bases (78.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4108_length_704_cov_12.190395:1-704 [pilon] Processing NODE_6633_length_495_cov_13.556150:1-495 [pilon] NODE_7741_length_430_cov_13.906149:1-430 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 98, Coverage: 13, minDepth: 5 [pilon] Confirmed 348 of 430 bases (80.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7741_length_430_cov_13.906149:1-430 [pilon] Processing NODE_12831_length_243_cov_24.770492:1-243 [pilon] NODE_8079_length_414_cov_18.477816:1-414 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 126, Coverage: 22, minDepth: 6 [pilon] Confirmed 337 of 414 bases (81.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8079_length_414_cov_18.477816:1-414 [pilon] Processing NODE_9582_length_342_cov_23.389140:1-342 [pilon] NODE_9559_length_343_cov_51.720721:1-343 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 254, Coverage: 41, minDepth: 10 [pilon] Confirmed 301 of 343 bases (87.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9559_length_343_cov_51.720721:1-343 [pilon] Processing NODE_1615_length_1212_cov_3.660862:1-1212 [pilon] NODE_5892_length_548_cov_27.220141:1-548 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 277, Coverage: 28, minDepth: 7 [pilon] Confirmed 361 of 548 bases (65.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5892_length_548_cov_27.220141:1-548 [pilon] Processing NODE_12267_length_243_cov_34.114754:1-243 [pilon] NODE_8806_length_377_cov_11.109375:1-377 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 61, Coverage: 8, minDepth: 5 [pilon] Confirmed 234 of 377 bases (62.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8806_length_377_cov_11.109375:1-377 [pilon] Processing NODE_8815_length_376_cov_20.160784:1-376 [pilon] NODE_440_length_1979_cov_24.081270:1-1979 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 1080, Coverage: 65, minDepth: 16 [pilon] Confirmed 1574 of 1979 bases (79.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_440_length_1979_cov_24.081270:1-1979 [pilon] Processing NODE_2710_length_927_cov_16.673697:1-927 [pilon] NODE_12573_length_243_cov_27.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12573_length_243_cov_27.950820:1-243 [pilon] Processing NODE_6781_length_484_cov_15.451791:1-484 [pilon] NODE_14353_length_243_cov_11.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14353_length_243_cov_11.442623:1-243 [pilon] Processing NODE_13411_length_243_cov_19.180328:1-243 [pilon] NODE_8918_length_370_cov_15.827309:1-370 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 74, Coverage: 11, minDepth: 5 [pilon] Confirmed 256 of 370 bases (69.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8918_length_370_cov_15.827309:1-370 [pilon] Processing NODE_102_length_2984_cov_14.011876:1-2984 [pilon] NODE_8211_length_408_cov_8.432056:1-408 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 58, Coverage: 5, minDepth: 5 [pilon] Confirmed 222 of 408 bases (54.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8211_length_408_cov_8.432056:1-408 [pilon] Processing NODE_5250_length_597_cov_1.096639:1-597 [pilon] NODE_9044_length_364_cov_13.238683:1-364 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 50, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 364 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9044_length_364_cov_13.238683:1-364 [pilon] Processing NODE_8982_length_367_cov_22.455285:1-367 [pilon] NODE_2711_length_926_cov_46.787578:1-926 log: [pilon] frags shovill.bam: coverage 103 [pilon] Total Reads: 855, Coverage: 103, minDepth: 26 [pilon] Confirmed 781 of 926 bases (84.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2711_length_926_cov_46.787578:1-926 [pilon] Processing NODE_5242_length_597_cov_8.871849:1-597 [pilon] NODE_1409_length_1295_cov_17.569847:1-1295 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 477, Coverage: 35, minDepth: 9 [pilon] Confirmed 1107 of 1295 bases (85.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1409_length_1295_cov_17.569847:1-1295 [pilon] Processing NODE_1421_length_1291_cov_26.269231:1-1291 [pilon] NODE_11836_length_252_cov_11.541985:1-252 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 96 of 252 bases (38.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11836_length_252_cov_11.541985:1-252 [pilon] Processing NODE_11844_length_252_cov_9.435115:1-252 [pilon] NODE_4925_length_624_cov_14.003976:1-624 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 159, Coverage: 17, minDepth: 5 [pilon] Confirmed 511 of 624 bases (81.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4925_length_624_cov_14.003976:1-624 [pilon] Processing NODE_4822_length_633_cov_1.351562:1-633 [pilon] NODE_3493_length_785_cov_1.631024:1-785 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 31, Coverage: 5, minDepth: 5 [pilon] Confirmed 351 of 785 bases (44.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3493_length_785_cov_1.631024:1-785 [pilon] Processing NODE_8644_length_385_cov_40.890152:1-385 [pilon] NODE_7007_length_471_cov_2.185714:1-471 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 28, Coverage: 8, minDepth: 5 [pilon] Confirmed 379 of 471 bases (80.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7007_length_471_cov_2.185714:1-471 [pilon] Processing NODE_9327_length_353_cov_28.439655:1-353 [pilon] NODE_5590_length_571_cov_9.357778:1-571 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 105, Coverage: 15, minDepth: 5 [pilon] Confirmed 426 of 571 bases (74.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5590_length_571_cov_9.357778:1-571 [pilon] Processing NODE_12682_length_243_cov_26.401639:1-243 [pilon] NODE_2312_length_1007_cov_28.597065:1-1007 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 587, Coverage: 58, minDepth: 15 [pilon] Confirmed 858 of 1007 bases (85.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2312_length_1007_cov_28.597065:1-1007 [pilon] Processing NODE_12374_length_243_cov_31.549180:1-243 [pilon] NODE_5464_length_580_cov_0.797386:1-580 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 17, Coverage: 3, minDepth: 5 [pilon] Confirmed 234 of 580 bases (40.34%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5464_length_580_cov_0.797386:1-580 [pilon] Processing NODE_3502_length_783_cov_3.737160:1-783 [pilon] NODE_8919_length_370_cov_12.485944:1-370 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 68, Coverage: 7, minDepth: 5 [pilon] Confirmed 189 of 370 bases (51.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8919_length_370_cov_12.485944:1-370 [pilon] Processing NODE_12820_length_243_cov_24.836066:1-243 [pilon] NODE_5045_length_615_cov_8.524291:1-615 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 84, Coverage: 11, minDepth: 5 [pilon] Confirmed 460 of 615 bases (74.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5045_length_615_cov_8.524291:1-615 [pilon] Processing NODE_10879_length_289_cov_7.791667:1-289 [pilon] NODE_7695_length_432_cov_33.967846:1-432 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 224, Coverage: 23, minDepth: 6 [pilon] Confirmed 315 of 432 bases (72.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7695_length_432_cov_33.967846:1-432 [pilon] Processing NODE_9515_length_345_cov_20.169643:1-345 [pilon] NODE_4048_length_710_cov_45.847199:1-710 log: [pilon] frags shovill.bam: coverage 83 [pilon] Total Reads: 621, Coverage: 83, minDepth: 21 [pilon] Confirmed 536 of 710 bases (75.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4048_length_710_cov_45.847199:1-710 [pilon] Processing NODE_14857_length_243_cov_7.114754:1-243 [pilon] NODE_8162_length_410_cov_45.903114:1-410 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 291, Coverage: 59, minDepth: 15 [pilon] Confirmed 350 of 410 bases (85.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8162_length_410_cov_45.903114:1-410 [pilon] Processing NODE_86_length_3126_cov_2.255907:1-3126 [pilon] NODE_10706_length_297_cov_23.903409:1-297 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 78, Coverage: 7, minDepth: 5 [pilon] Confirmed 158 of 297 bases (53.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10706_length_297_cov_23.903409:1-297 [pilon] Processing NODE_9734_length_336_cov_30.083721:1-336 [pilon] NODE_11617_length_259_cov_7.601449:1-259 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 8 of 259 bases (3.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11617_length_259_cov_7.601449:1-259 [pilon] Processing NODE_1550_length_1240_cov_24.548704:1-1240 [pilon] NODE_9476_length_347_cov_14.004425:1-347 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 73, Coverage: 17, minDepth: 5 [pilon] Confirmed 307 of 347 bases (88.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9476_length_347_cov_14.004425:1-347 [pilon] Processing NODE_1013_length_1489_cov_2.701023:1-1489 [pilon] NODE_6633_length_495_cov_13.556150:1-495 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 123, Coverage: 15, minDepth: 5 [pilon] Confirmed 395 of 495 bases (79.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6633_length_495_cov_13.556150:1-495 [pilon] Processing NODE_2870_length_899_cov_1.353470:1-899 [pilon] NODE_12831_length_243_cov_24.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12831_length_243_cov_24.770492:1-243 [pilon] NODE_9582_length_342_cov_23.389140:1-342 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 119, Coverage: 16, minDepth: 5 [pilon] Confirmed 300 of 342 bases (87.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9582_length_342_cov_23.389140:1-342 [pilon] Processing NODE_5785_length_557_cov_0.772936:1-557 [pilon] Processing NODE_3449_length_791_cov_66.034328:1-791 [pilon] NODE_1615_length_1212_cov_3.660862:1-1212 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 97, Coverage: 10, minDepth: 5 [pilon] Confirmed 985 of 1212 bases (81.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1615_length_1212_cov_3.660862:1-1212 [pilon] Processing NODE_9175_length_358_cov_21.869198:1-358 [pilon] NODE_2710_length_927_cov_16.673697:1-927 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 312, Coverage: 29, minDepth: 7 [pilon] Confirmed 566 of 927 bases (61.06%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2710_length_927_cov_16.673697:1-927 [pilon] Processing NODE_3623_length_765_cov_9.549689:1-765 [pilon] NODE_6781_length_484_cov_15.451791:1-484 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 121, Coverage: 15, minDepth: 5 [pilon] Confirmed 324 of 484 bases (66.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6781_length_484_cov_15.451791:1-484 [pilon] Processing NODE_14868_length_243_cov_7.008197:1-243 [pilon] NODE_8815_length_376_cov_20.160784:1-376 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 121, Coverage: 19, minDepth: 5 [pilon] Confirmed 307 of 376 bases (81.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8815_length_376_cov_20.160784:1-376 [pilon] Processing NODE_2026_length_1079_cov_15.757829:1-1079 [pilon] NODE_12267_length_243_cov_34.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12267_length_243_cov_34.114754:1-243 [pilon] Processing NODE_12434_length_243_cov_30.262295:1-243 [pilon] NODE_13411_length_243_cov_19.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13411_length_243_cov_19.180328:1-243 [pilon] Processing NODE_14921_length_243_cov_6.491803:1-243 [pilon] NODE_9327_length_353_cov_28.439655:1-353 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 141, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 353 bases (36.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9327_length_353_cov_28.439655:1-353 [pilon] Processing NODE_3754_length_747_cov_8.669329:1-747 [pilon] NODE_5242_length_597_cov_8.871849:1-597 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 92, Coverage: 14, minDepth: 5 [pilon] Confirmed 504 of 597 bases (84.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5242_length_597_cov_8.871849:1-597 [pilon] Processing NODE_14852_length_243_cov_7.147541:1-243 [pilon] NODE_5250_length_597_cov_1.096639:1-597 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 12 of 597 bases (2.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5250_length_597_cov_1.096639:1-597 [pilon] Processing NODE_11997_length_246_cov_19.744000:1-246 [pilon] NODE_8982_length_367_cov_22.455285:1-367 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 129, Coverage: 12, minDepth: 5 [pilon] Confirmed 291 of 367 bases (79.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8982_length_367_cov_22.455285:1-367 [pilon] Processing NODE_6379_length_512_cov_1.953964:1-512 [pilon] NODE_3502_length_783_cov_3.737160:1-783 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 62, Coverage: 9, minDepth: 5 [pilon] Confirmed 485 of 783 bases (61.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3502_length_783_cov_3.737160:1-783 [pilon] Processing NODE_10755_length_295_cov_14.396552:1-295 [pilon] NODE_102_length_2984_cov_14.011876:1-2984 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 1005, Coverage: 33, minDepth: 8 [pilon] Confirmed 2595 of 2984 bases (86.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_102_length_2984_cov_14.011876:1-2984 [pilon] Processing NODE_10582_length_302_cov_15.381215:1-302 [pilon] NODE_1421_length_1291_cov_26.269231:1-1291 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 681, Coverage: 58, minDepth: 15 [pilon] Confirmed 1020 of 1291 bases (79.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1421_length_1291_cov_26.269231:1-1291 [pilon] Processing NODE_5150_length_606_cov_4.925773:1-606 [pilon] NODE_11844_length_252_cov_9.435115:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11844_length_252_cov_9.435115:1-252 [pilon] Processing NODE_3060_length_861_cov_7.679730:1-861 [pilon] NODE_4822_length_633_cov_1.351562:1-633 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 278 of 633 bases (43.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4822_length_633_cov_1.351562:1-633 [pilon] Processing NODE_12537_length_243_cov_28.508197:1-243 [pilon] NODE_12682_length_243_cov_26.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12682_length_243_cov_26.401639:1-243 [pilon] Processing NODE_222_length_2427_cov_29.304857:1-2427 [pilon] NODE_10879_length_289_cov_7.791667:1-289 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 28, Coverage: 4, minDepth: 5 [pilon] Confirmed 45 of 289 bases (15.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10879_length_289_cov_7.791667:1-289 [pilon] Processing NODE_6163_length_527_cov_24.470443:1-527 [pilon] NODE_12374_length_243_cov_31.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12374_length_243_cov_31.549180:1-243 [pilon] Processing NODE_14754_length_243_cov_8.090164:1-243 [pilon] NODE_8644_length_385_cov_40.890152:1-385 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 249, Coverage: 46, minDepth: 12 [pilon] Confirmed 306 of 385 bases (79.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8644_length_385_cov_40.890152:1-385 [pilon] Processing NODE_6509_length_503_cov_12.437173:1-503 [pilon] NODE_9515_length_345_cov_20.169643:1-345 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 96, Coverage: 4, minDepth: 5 [pilon] Confirmed 133 of 345 bases (38.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9515_length_345_cov_20.169643:1-345 [pilon] Processing NODE_13475_length_243_cov_18.639344:1-243 [pilon] NODE_12820_length_243_cov_24.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12820_length_243_cov_24.836066:1-243 [pilon] Processing NODE_8050_length_416_cov_0.637288:1-416 [pilon] NODE_14857_length_243_cov_7.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14857_length_243_cov_7.114754:1-243 [pilon] Processing NODE_12553_length_243_cov_28.229508:1-243 [pilon] NODE_9734_length_336_cov_30.083721:1-336 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 152, Coverage: 26, minDepth: 7 [pilon] Confirmed 294 of 336 bases (87.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9734_length_336_cov_30.083721:1-336 [pilon] Processing NODE_11061_length_281_cov_6.825000:1-281 [pilon] NODE_86_length_3126_cov_2.255907:1-3126 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 198, Coverage: 8, minDepth: 5 [pilon] Confirmed 2053 of 3126 bases (65.67%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_86_length_3126_cov_2.255907:1-3126 [pilon] Processing NODE_3089_length_855_cov_17.989101:1-855 [pilon] NODE_14921_length_243_cov_6.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14921_length_243_cov_6.491803:1-243 [pilon] Processing NODE_14641_length_243_cov_9.081967:1-243 [pilon] NODE_1550_length_1240_cov_24.548704:1-1240 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 658, Coverage: 42, minDepth: 11 [pilon] Confirmed 1032 of 1240 bases (83.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1550_length_1240_cov_24.548704:1-1240 [pilon] Processing NODE_9486_length_346_cov_15.235556:1-346 [pilon] NODE_1013_length_1489_cov_2.701023:1-1489 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 95, Coverage: 8, minDepth: 5 [pilon] Confirmed 1030 of 1489 bases (69.17%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1013_length_1489_cov_2.701023:1-1489 [pilon] Processing NODE_11183_length_276_cov_19.677419:1-276 [pilon] NODE_2870_length_899_cov_1.353470:1-899 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 34, Coverage: 5, minDepth: 5 [pilon] Confirmed 479 of 899 bases (53.28%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2870_length_899_cov_1.353470:1-899 [pilon] Processing NODE_1091_length_1446_cov_7.888302:1-1446 [pilon] NODE_5785_length_557_cov_0.772936:1-557 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 18 of 557 bases (3.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5785_length_557_cov_0.772936:1-557 [pilon] Processing NODE_1281_length_1348_cov_11.723716:1-1348 [pilon] NODE_3449_length_791_cov_66.034328:1-791 log: [pilon] frags shovill.bam: coverage 132 [pilon] Total Reads: 982, Coverage: 132, minDepth: 33 [pilon] Confirmed 710 of 791 bases (89.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3449_length_791_cov_66.034328:1-791 [pilon] Processing NODE_13890_length_243_cov_14.991803:1-243 [pilon] NODE_3623_length_765_cov_9.549689:1-765 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 177, Coverage: 30, minDepth: 8 [pilon] Confirmed 516 of 765 bases (67.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3623_length_765_cov_9.549689:1-765 [pilon] Processing NODE_7533_length_441_cov_28.609375:1-441 [pilon] NODE_9175_length_358_cov_21.869198:1-358 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 120, Coverage: 24, minDepth: 6 [pilon] Confirmed 279 of 358 bases (77.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9175_length_358_cov_21.869198:1-358 [pilon] Processing NODE_9187_length_357_cov_32.872881:1-357 [pilon] NODE_14868_length_243_cov_7.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14868_length_243_cov_7.008197:1-243 [pilon] Processing NODE_11455_length_264_cov_30.944056:1-264 [pilon] NODE_12434_length_243_cov_30.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 81, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12434_length_243_cov_30.262295:1-243 [pilon] Processing NODE_1147_length_1420_cov_1.910701:1-1420 [pilon] NODE_14852_length_243_cov_7.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14852_length_243_cov_7.147541:1-243 [pilon] Processing NODE_364_length_2106_cov_28.681612:1-2106 [pilon] NODE_3754_length_747_cov_8.669329:1-747 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 121, Coverage: 15, minDepth: 5 [pilon] Confirmed 547 of 747 bases (73.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3754_length_747_cov_8.669329:1-747 [pilon] Processing NODE_3971_length_718_cov_2.457286:1-718 [pilon] NODE_6379_length_512_cov_1.953964:1-512 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 242 of 512 bases (47.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6379_length_512_cov_1.953964:1-512 [pilon] Processing NODE_2545_length_957_cov_20.666268:1-957 [pilon] NODE_11997_length_246_cov_19.744000:1-246 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 54, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11997_length_246_cov_19.744000:1-246 [pilon] Processing NODE_10439_length_306_cov_25.172973:1-306 [pilon] NODE_10582_length_302_cov_15.381215:1-302 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 67, Coverage: 9, minDepth: 5 [pilon] Confirmed 221 of 302 bases (73.18%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10582_length_302_cov_15.381215:1-302 [pilon] NODE_10755_length_295_cov_14.396552:1-295 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 55, Coverage: 3, minDepth: 5 [pilon] Confirmed 113 of 295 bases (38.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10755_length_295_cov_14.396552:1-295 [pilon] Processing NODE_8912_length_371_cov_9.048000:1-371 [pilon] NODE_2026_length_1079_cov_15.757829:1-1079 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 445, Coverage: 40, minDepth: 10 [pilon] Confirmed 612 of 1079 bases (56.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2026_length_1079_cov_15.757829:1-1079 [pilon] Processing NODE_2093_length_1061_cov_19.752128:1-1061 [pilon] Processing NODE_804_length_1625_cov_1.716090:1-1625 [pilon] NODE_13475_length_243_cov_18.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13475_length_243_cov_18.639344:1-243 [pilon] Processing NODE_14566_length_243_cov_9.770492:1-243 [pilon] NODE_5150_length_606_cov_4.925773:1-606 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 60, Coverage: 13, minDepth: 5 [pilon] Confirmed 461 of 606 bases (76.07%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5150_length_606_cov_4.925773:1-606 [pilon] Processing NODE_3506_length_782_cov_58.760968:1-782 [pilon] NODE_3060_length_861_cov_7.679730:1-861 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 138, Coverage: 9, minDepth: 5 [pilon] Confirmed 495 of 861 bases (57.49%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3060_length_861_cov_7.679730:1-861 [pilon] Processing NODE_13617_length_243_cov_17.327869:1-243 [pilon] NODE_12537_length_243_cov_28.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12537_length_243_cov_28.508197:1-243 [pilon] Processing NODE_3615_length_767_cov_2.154799:1-767 [pilon] NODE_14754_length_243_cov_8.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14754_length_243_cov_8.090164:1-243 [pilon] Processing NODE_5446_length_581_cov_1.263043:1-581 [pilon] NODE_6163_length_527_cov_24.470443:1-527 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 218, Coverage: 33, minDepth: 8 [pilon] Confirmed 341 of 527 bases (64.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6163_length_527_cov_24.470443:1-527 [pilon] Processing NODE_565_length_1845_cov_2.734339:1-1845 [pilon] NODE_8050_length_416_cov_0.637288:1-416 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 416 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8050_length_416_cov_0.637288:1-416 [pilon] Processing NODE_10689_length_298_cov_23.316384:1-298 [pilon] NODE_6509_length_503_cov_12.437173:1-503 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 107, Coverage: 12, minDepth: 5 [pilon] Confirmed 354 of 503 bases (70.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6509_length_503_cov_12.437173:1-503 [pilon] Processing NODE_11795_length_253_cov_10.075758:1-253 [pilon] NODE_222_length_2427_cov_29.304857:1-2427 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 1608, Coverage: 74, minDepth: 19 [pilon] Confirmed 2038 of 2427 bases (83.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_222_length_2427_cov_29.304857:1-2427 [pilon] Processing NODE_2290_length_1013_cov_19.639013:1-1013 [pilon] NODE_12553_length_243_cov_28.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12553_length_243_cov_28.229508:1-243 [pilon] Processing NODE_5635_length_568_cov_3.536913:1-568 [pilon] NODE_11061_length_281_cov_6.825000:1-281 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 19, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 281 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11061_length_281_cov_6.825000:1-281 [pilon] Processing NODE_4496_length_662_cov_6.158965:1-662 [pilon] NODE_3089_length_855_cov_17.989101:1-855 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 301, Coverage: 32, minDepth: 8 [pilon] Confirmed 670 of 855 bases (78.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3089_length_855_cov_17.989101:1-855 [pilon] Processing NODE_4300_length_681_cov_16.875000:1-681 [pilon] NODE_14641_length_243_cov_9.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14641_length_243_cov_9.081967:1-243 [pilon] Processing NODE_6168_length_527_cov_13.741379:1-527 [pilon] NODE_11183_length_276_cov_19.677419:1-276 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 58, Coverage: 5, minDepth: 5 [pilon] Confirmed 131 of 276 bases (47.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11183_length_276_cov_19.677419:1-276 [pilon] Processing NODE_14326_length_243_cov_11.647541:1-243 [pilon] NODE_9486_length_346_cov_15.235556:1-346 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 73, Coverage: 2, minDepth: 5 [pilon] Confirmed 122 of 346 bases (35.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9486_length_346_cov_15.235556:1-346 [pilon] Processing NODE_6434_length_508_cov_0.478036:1-508 [pilon] NODE_14566_length_243_cov_9.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14566_length_243_cov_9.770492:1-243 [pilon] Processing NODE_8180_length_409_cov_10.451389:1-409 [pilon] NODE_2545_length_957_cov_20.666268:1-957 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 404, Coverage: 31, minDepth: 8 [pilon] Confirmed 832 of 957 bases (86.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2545_length_957_cov_20.666268:1-957 [pilon] Processing NODE_833_length_1610_cov_5.840833:1-1610 [pilon] NODE_9187_length_357_cov_32.872881:1-357 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 121, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 357 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9187_length_357_cov_32.872881:1-357 [pilon] Processing NODE_11892_length_249_cov_22.265625:1-249 [pilon] NODE_1091_length_1446_cov_7.888302:1-1446 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 246, Coverage: 22, minDepth: 6 [pilon] Confirmed 1063 of 1446 bases (73.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1091_length_1446_cov_7.888302:1-1446 [pilon] Processing NODE_14587_length_243_cov_9.540984:1-243 [pilon] NODE_1281_length_1348_cov_11.723716:1-1348 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 400, Coverage: 26, minDepth: 7 [pilon] Confirmed 1266 of 1348 bases (93.92%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1281_length_1348_cov_11.723716:1-1348 [pilon] Processing NODE_15210_length_154_cov_16.939394:1-154 [pilon] NODE_13890_length_243_cov_14.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13890_length_243_cov_14.991803:1-243 [pilon] Processing NODE_7380_length_449_cov_28.228659:1-449 [pilon] NODE_7533_length_441_cov_28.609375:1-441 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 204, Coverage: 29, minDepth: 7 [pilon] Confirmed 341 of 441 bases (77.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7533_length_441_cov_28.609375:1-441 [pilon] Processing NODE_3879_length_730_cov_27.152709:1-730 [pilon] NODE_3971_length_718_cov_2.457286:1-718 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 568 of 718 bases (79.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3971_length_718_cov_2.457286:1-718 [pilon] Processing NODE_527_length_1889_cov_21.788462:1-1889 [pilon] NODE_11455_length_264_cov_30.944056:1-264 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 91, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 264 bases (49.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11455_length_264_cov_30.944056:1-264 [pilon] Processing NODE_10043_length_324_cov_10.000000:1-324 [pilon] NODE_1147_length_1420_cov_1.910701:1-1420 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 84, Coverage: 8, minDepth: 5 [pilon] Confirmed 1009 of 1420 bases (71.06%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1147_length_1420_cov_1.910701:1-1420 [pilon] Processing NODE_7831_length_426_cov_4.144262:1-426 [pilon] NODE_2093_length_1061_cov_19.752128:1-1061 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 487, Coverage: 32, minDepth: 8 [pilon] Confirmed 915 of 1061 bases (86.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2093_length_1061_cov_19.752128:1-1061 [pilon] Processing NODE_7210_length_459_cov_28.420118:1-459 [pilon] NODE_10439_length_306_cov_25.172973:1-306 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 75, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 306 bases (42.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10439_length_306_cov_25.172973:1-306 [pilon] Processing NODE_11858_length_251_cov_16.946154:1-251 [pilon] NODE_8912_length_371_cov_9.048000:1-371 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 77, Coverage: 3, minDepth: 5 [pilon] Confirmed 94 of 371 bases (25.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8912_length_371_cov_9.048000:1-371 [pilon] Processing NODE_4918_length_625_cov_1.184524:1-625 [pilon] NODE_364_length_2106_cov_28.681612:1-2106 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 1462, Coverage: 81, minDepth: 20 [pilon] Confirmed 2009 of 2106 bases (95.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_364_length_2106_cov_28.681612:1-2106 [pilon] Processing NODE_13205_length_243_cov_21.024590:1-243 [pilon] NODE_13617_length_243_cov_17.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13617_length_243_cov_17.327869:1-243 [pilon] Processing NODE_12313_length_243_cov_32.934426:1-243 [pilon] NODE_804_length_1625_cov_1.716090:1-1625 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 79, Coverage: 6, minDepth: 5 [pilon] Confirmed 767 of 1625 bases (47.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_804_length_1625_cov_1.716090:1-1625 [pilon] Processing NODE_10616_length_300_cov_24.284916:1-300 [pilon] NODE_3506_length_782_cov_58.760968:1-782 log: [pilon] frags shovill.bam: coverage 129 [pilon] Total Reads: 907, Coverage: 129, minDepth: 32 [pilon] Confirmed 677 of 782 bases (86.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3506_length_782_cov_58.760968:1-782 [pilon] Processing NODE_3863_length_732_cov_26.479542:1-732 [pilon] NODE_5446_length_581_cov_1.263043:1-581 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 267 of 581 bases (45.96%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5446_length_581_cov_1.263043:1-581 [pilon] Processing NODE_5692_length_564_cov_1.726862:1-564 [pilon] NODE_3615_length_767_cov_2.154799:1-767 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 426 of 767 bases (55.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3615_length_767_cov_2.154799:1-767 [pilon] Processing NODE_14968_length_243_cov_5.852459:1-243 [pilon] NODE_10689_length_298_cov_23.316384:1-298 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 73, Coverage: 5, minDepth: 5 [pilon] Confirmed 148 of 298 bases (49.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10689_length_298_cov_23.316384:1-298 [pilon] Processing NODE_3504_length_783_cov_2.966767:1-783 [pilon] NODE_565_length_1845_cov_2.734339:1-1845 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 122, Coverage: 9, minDepth: 5 [pilon] Confirmed 1352 of 1845 bases (73.28%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_565_length_1845_cov_2.734339:1-1845 [pilon] Processing NODE_14057_length_243_cov_13.778689:1-243 [pilon] NODE_833_length_1610_cov_5.840833:1-1610 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 225, Coverage: 18, minDepth: 5 [pilon] Confirmed 1101 of 1610 bases (68.39%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_833_length_1610_cov_5.840833:1-1610 [pilon] Processing NODE_2452_length_977_cov_2.434579:1-977 [pilon] NODE_11795_length_253_cov_10.075758:1-253 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 29, Coverage: 4, minDepth: 5 [pilon] Confirmed 95 of 253 bases (37.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11795_length_253_cov_10.075758:1-253 [pilon] Processing NODE_14753_length_243_cov_8.098361:1-243 [pilon] NODE_5635_length_568_cov_3.536913:1-568 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 33, Coverage: 8, minDepth: 5 [pilon] Confirmed 417 of 568 bases (73.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5635_length_568_cov_3.536913:1-568 [pilon] Processing NODE_14660_length_243_cov_8.950820:1-243 [pilon] NODE_8180_length_409_cov_10.451389:1-409 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 64, Coverage: 12, minDepth: 5 [pilon] Confirmed 314 of 409 bases (76.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8180_length_409_cov_10.451389:1-409 [pilon] Processing NODE_2964_length_880_cov_18.075099:1-880 [pilon] NODE_2290_length_1013_cov_19.639013:1-1013 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 443, Coverage: 46, minDepth: 12 [pilon] Confirmed 873 of 1013 bases (86.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2290_length_1013_cov_19.639013:1-1013 [pilon] Processing NODE_6423_length_509_cov_1.731959:1-509 [pilon] NODE_4496_length_662_cov_6.158965:1-662 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 81, Coverage: 13, minDepth: 5 [pilon] Confirmed 477 of 662 bases (72.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4496_length_662_cov_6.158965:1-662 [pilon] Processing NODE_1435_length_1286_cov_9.277253:1-1286 [pilon] NODE_4300_length_681_cov_16.875000:1-681 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 240, Coverage: 25, minDepth: 6 [pilon] Confirmed 656 of 681 bases (96.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4300_length_681_cov_16.875000:1-681 [pilon] Processing NODE_2587_length_948_cov_15.207981:1-948 [pilon] NODE_11892_length_249_cov_22.265625:1-249 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 64, Coverage: 4, minDepth: 5 [pilon] Confirmed 103 of 249 bases (41.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11892_length_249_cov_22.265625:1-249 [pilon] Processing NODE_10832_length_291_cov_18.305882:1-291 [pilon] NODE_6434_length_508_cov_0.478036:1-508 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 508 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6434_length_508_cov_0.478036:1-508 [pilon] NODE_14326_length_243_cov_11.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14326_length_243_cov_11.647541:1-243 [pilon] Processing NODE_14802_length_243_cov_7.696721:1-243 [pilon] NODE_6168_length_527_cov_13.741379:1-527 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 119, Coverage: 11, minDepth: 5 [pilon] Confirmed 346 of 527 bases (65.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6168_length_527_cov_13.741379:1-527 [pilon] Processing NODE_3051_length_862_cov_15.421053:1-862 [pilon] Processing NODE_7882_length_423_cov_31.036424:1-423 [pilon] NODE_14587_length_243_cov_9.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14587_length_243_cov_9.540984:1-243 [pilon] Processing NODE_6878_length_479_cov_11.751397:1-479 [pilon] NODE_7380_length_449_cov_28.228659:1-449 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 228, Coverage: 41, minDepth: 10 [pilon] Confirmed 316 of 449 bases (70.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7380_length_449_cov_28.228659:1-449 [pilon] Processing NODE_9406_length_350_cov_16.048035:1-350 [pilon] NODE_15210_length_154_cov_16.939394:1-154 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 154 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15210_length_154_cov_16.939394:1-154 [pilon] Processing NODE_4669_length_647_cov_0.796578:1-647 [pilon] NODE_3879_length_730_cov_27.152709:1-730 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 367, Coverage: 56, minDepth: 14 [pilon] Confirmed 621 of 730 bases (85.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3879_length_730_cov_27.152709:1-730 [pilon] Processing NODE_11967_length_246_cov_33.744000:1-246 [pilon] NODE_10043_length_324_cov_10.000000:1-324 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 40, Coverage: 10, minDepth: 5 [pilon] Confirmed 233 of 324 bases (71.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10043_length_324_cov_10.000000:1-324 [pilon] Processing NODE_2048_length_1073_cov_3.056723:1-1073 [pilon] NODE_7831_length_426_cov_4.144262:1-426 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 26, Coverage: 8, minDepth: 5 [pilon] Confirmed 271 of 426 bases (63.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7831_length_426_cov_4.144262:1-426 [pilon] Processing NODE_12751_length_243_cov_25.565574:1-243 [pilon] NODE_12313_length_243_cov_32.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12313_length_243_cov_32.934426:1-243 [pilon] Processing NODE_4806_length_634_cov_8.056530:1-634 [pilon] NODE_13205_length_243_cov_21.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13205_length_243_cov_21.024590:1-243 [pilon] Processing NODE_8747_length_380_cov_22.992278:1-380 [pilon] NODE_5692_length_564_cov_1.726862:1-564 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 228 of 564 bases (40.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5692_length_564_cov_1.726862:1-564 [pilon] Processing NODE_6969_length_473_cov_45.900568:1-473 [pilon] NODE_11858_length_251_cov_16.946154:1-251 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 38, Coverage: 4, minDepth: 5 [pilon] Confirmed 71 of 251 bases (28.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11858_length_251_cov_16.946154:1-251 [pilon] Processing NODE_10040_length_324_cov_12.733990:1-324 [pilon] NODE_4918_length_625_cov_1.184524:1-625 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 28, Coverage: 4, minDepth: 5 [pilon] Confirmed 354 of 625 bases (56.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4918_length_625_cov_1.184524:1-625 [pilon] Processing NODE_13223_length_243_cov_20.893443:1-243 [pilon] NODE_7210_length_459_cov_28.420118:1-459 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 193, Coverage: 20, minDepth: 5 [pilon] Confirmed 346 of 459 bases (75.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7210_length_459_cov_28.420118:1-459 [pilon] Processing NODE_11051_length_282_cov_7.913043:1-282 [pilon] NODE_527_length_1889_cov_21.788462:1-1889 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 1020, Coverage: 39, minDepth: 10 [pilon] Confirmed 1587 of 1889 bases (84.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_527_length_1889_cov_21.788462:1-1889 [pilon] Processing NODE_6319_length_516_cov_1.387342:1-516 [pilon] NODE_2452_length_977_cov_2.434579:1-977 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 60, Coverage: 8, minDepth: 5 [pilon] Confirmed 546 of 977 bases (55.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2452_length_977_cov_2.434579:1-977 [pilon] Processing NODE_2484_length_970_cov_25.608952:1-970 [pilon] NODE_3863_length_732_cov_26.479542:1-732 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 404, Coverage: 43, minDepth: 11 [pilon] Confirmed 475 of 732 bases (64.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3863_length_732_cov_26.479542:1-732 [pilon] Processing NODE_8877_length_373_cov_12.035714:1-373 [pilon] NODE_10616_length_300_cov_24.284916:1-300 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 89, Coverage: 17, minDepth: 5 [pilon] Confirmed 252 of 300 bases (84.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10616_length_300_cov_24.284916:1-300 [pilon] Processing NODE_7706_length_432_cov_15.527331:1-432 [pilon] NODE_14057_length_243_cov_13.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14057_length_243_cov_13.778689:1-243 [pilon] Processing NODE_10127_length_321_cov_7.695000:1-321 [pilon] NODE_14968_length_243_cov_5.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14968_length_243_cov_5.852459:1-243 [pilon] NODE_3504_length_783_cov_2.966767:1-783 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 54, Coverage: 8, minDepth: 5 [pilon] Confirmed 506 of 783 bases (64.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3504_length_783_cov_2.966767:1-783 [pilon] Processing NODE_4862_length_629_cov_35.612205:1-629 [pilon] Processing NODE_7239_length_458_cov_1.738872:1-458 [pilon] NODE_2964_length_880_cov_18.075099:1-880 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 364, Coverage: 15, minDepth: 5 [pilon] Confirmed 715 of 880 bases (81.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2964_length_880_cov_18.075099:1-880 [pilon] Processing NODE_11110_length_279_cov_18.936709:1-279 [pilon] NODE_6423_length_509_cov_1.731959:1-509 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 272 of 509 bases (53.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6423_length_509_cov_1.731959:1-509 [pilon] Processing NODE_11906_length_249_cov_17.015625:1-249 [pilon] NODE_14660_length_243_cov_8.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14660_length_243_cov_8.950820:1-243 [pilon] Processing NODE_13539_length_243_cov_18.008197:1-243 [pilon] NODE_10832_length_291_cov_18.305882:1-291 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 71, Coverage: 6, minDepth: 5 [pilon] Confirmed 190 of 291 bases (65.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10832_length_291_cov_18.305882:1-291 [pilon] Processing NODE_7010_length_471_cov_1.251429:1-471 [pilon] NODE_14753_length_243_cov_8.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14753_length_243_cov_8.098361:1-243 [pilon] Processing NODE_2144_length_1047_cov_22.194384:1-1047 [pilon] NODE_1435_length_1286_cov_9.277253:1-1286 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 273, Coverage: 17, minDepth: 5 [pilon] Confirmed 1161 of 1286 bases (90.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1435_length_1286_cov_9.277253:1-1286 [pilon] Processing NODE_13195_length_243_cov_21.131148:1-243 [pilon] NODE_2587_length_948_cov_15.207981:1-948 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 287, Coverage: 28, minDepth: 7 [pilon] Confirmed 721 of 948 bases (76.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2587_length_948_cov_15.207981:1-948 [pilon] Processing NODE_10484_length_306_cov_5.956757:1-306 [pilon] NODE_7882_length_423_cov_31.036424:1-423 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 205, Coverage: 26, minDepth: 7 [pilon] Confirmed 256 of 423 bases (60.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7882_length_423_cov_31.036424:1-423 [pilon] Processing NODE_6282_length_519_cov_1.233668:1-519 [pilon] NODE_3051_length_862_cov_15.421053:1-862 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 276, Coverage: 30, minDepth: 8 [pilon] Confirmed 627 of 862 bases (72.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3051_length_862_cov_15.421053:1-862 [pilon] Processing NODE_13424_length_243_cov_19.081967:1-243 [pilon] NODE_6878_length_479_cov_11.751397:1-479 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 93, Coverage: 16, minDepth: 5 [pilon] Confirmed 382 of 479 bases (79.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6878_length_479_cov_11.751397:1-479 [pilon] Processing NODE_840_length_1604_cov_27.667566:1-1604 [pilon] NODE_14802_length_243_cov_7.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14802_length_243_cov_7.696721:1-243 [pilon] Processing NODE_4681_length_645_cov_7.786260:1-645 [pilon] NODE_9406_length_350_cov_16.048035:1-350 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 97, Coverage: 10, minDepth: 5 [pilon] Confirmed 241 of 350 bases (68.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9406_length_350_cov_16.048035:1-350 [pilon] Processing NODE_12070_length_245_cov_8.919355:1-245 [pilon] NODE_2484_length_970_cov_25.608952:1-970 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 541, Coverage: 38, minDepth: 10 [pilon] Confirmed 745 of 970 bases (76.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2484_length_970_cov_25.608952:1-970 [pilon] Processing NODE_12077_length_244_cov_26.130081:1-244 [pilon] NODE_4669_length_647_cov_0.796578:1-647 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 260 of 647 bases (40.19%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4669_length_647_cov_0.796578:1-647 [pilon] Processing NODE_809_length_1622_cov_13.906063:1-1622 [pilon] NODE_11051_length_282_cov_7.913043:1-282 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 38, Coverage: 2, minDepth: 5 [pilon] Confirmed 10 of 282 bases (3.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12751_length_243_cov_25.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12751_length_243_cov_25.565574:1-243 [pilon] Finished processing NODE_11051_length_282_cov_7.913043:1-282 [pilon] Processing NODE_2077_length_1065_cov_25.200212:1-1065 [pilon] Processing NODE_2893_length_894_cov_3.981889:1-894 [pilon] NODE_11967_length_246_cov_33.744000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 81, Coverage: 3, minDepth: 5 [pilon] Confirmed 75 of 246 bases (30.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11967_length_246_cov_33.744000:1-246 [pilon] Processing NODE_8258_length_406_cov_4.757895:1-406 [pilon] NODE_8747_length_380_cov_22.992278:1-380 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 142, Coverage: 5, minDepth: 5 [pilon] Confirmed 142 of 380 bases (37.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8747_length_380_cov_22.992278:1-380 [pilon] Processing NODE_4243_length_688_cov_22.673721:1-688 [pilon] NODE_4806_length_634_cov_8.056530:1-634 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 129, Coverage: 19, minDepth: 5 [pilon] Confirmed 487 of 634 bases (76.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4806_length_634_cov_8.056530:1-634 [pilon] Processing NODE_149_length_2729_cov_21.815567:1-2729 [pilon] NODE_2048_length_1073_cov_3.056723:1-1073 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 84, Coverage: 10, minDepth: 5 [pilon] Confirmed 792 of 1073 bases (73.81%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2048_length_1073_cov_3.056723:1-1073 [pilon] Processing NODE_8756_length_380_cov_9.791506:1-380 [pilon] NODE_6969_length_473_cov_45.900568:1-473 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 348, Coverage: 65, minDepth: 16 [pilon] Confirmed 404 of 473 bases (85.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6969_length_473_cov_45.900568:1-473 [pilon] Processing NODE_5650_length_567_cov_10.894619:1-567 [pilon] NODE_13223_length_243_cov_20.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13223_length_243_cov_20.893443:1-243 [pilon] Processing NODE_5633_length_568_cov_9.838926:1-568 [pilon] NODE_10040_length_324_cov_12.733990:1-324 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 150 of 324 bases (46.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10040_length_324_cov_12.733990:1-324 [pilon] Processing NODE_6394_length_510_cov_45.848329:1-510 [pilon] NODE_6319_length_516_cov_1.387342:1-516 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 248 of 516 bases (48.06%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6319_length_516_cov_1.387342:1-516 [pilon] Processing NODE_12893_length_243_cov_24.131148:1-243 [pilon] NODE_11110_length_279_cov_18.936709:1-279 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 63, Coverage: 6, minDepth: 5 [pilon] Confirmed 168 of 279 bases (60.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11110_length_279_cov_18.936709:1-279 [pilon] Processing NODE_10007_length_324_cov_39.935961:1-324 [pilon] NODE_8877_length_373_cov_12.035714:1-373 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 75, Coverage: 8, minDepth: 5 [pilon] Confirmed 288 of 373 bases (77.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8877_length_373_cov_12.035714:1-373 [pilon] Processing NODE_247_length_2350_cov_22.052490:1-2350 [pilon] NODE_10127_length_321_cov_7.695000:1-321 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 36, Coverage: 6, minDepth: 5 [pilon] Confirmed 176 of 321 bases (54.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10127_length_321_cov_7.695000:1-321 [pilon] Processing NODE_11665_length_258_cov_9.992701:1-258 [pilon] NODE_4862_length_629_cov_35.612205:1-629 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 423, Coverage: 54, minDepth: 14 [pilon] Confirmed 570 of 629 bases (90.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4862_length_629_cov_35.612205:1-629 [pilon] Processing NODE_2936_length_884_cov_25.086501:1-884 [pilon] NODE_7706_length_432_cov_15.527331:1-432 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 114, Coverage: 25, minDepth: 6 [pilon] Confirmed 342 of 432 bases (79.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7706_length_432_cov_15.527331:1-432 [pilon] Processing NODE_7902_length_423_cov_1.672185:1-423 [pilon] NODE_7239_length_458_cov_1.738872:1-458 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 181 of 458 bases (39.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7239_length_458_cov_1.738872:1-458 [pilon] Processing NODE_12453_length_243_cov_29.836066:1-243 [pilon] NODE_13539_length_243_cov_18.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13539_length_243_cov_18.008197:1-243 [pilon] Processing NODE_5239_length_597_cov_15.947479:1-597 [pilon] NODE_11906_length_249_cov_17.015625:1-249 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 49, Coverage: 3, minDepth: 5 [pilon] Confirmed 62 of 249 bases (24.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11906_length_249_cov_17.015625:1-249 [pilon] Processing NODE_10155_length_318_cov_80.776650:1-318 [pilon] NODE_12077_length_244_cov_26.130081:1-244 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 187 of 244 bases (76.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7010_length_471_cov_1.251429:1-471 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 240 of 471 bases (50.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7010_length_471_cov_1.251429:1-471 [pilon] Processing NODE_2334_length_1004_cov_1.635334:1-1004 [pilon] Finished processing NODE_12077_length_244_cov_26.130081:1-244 [pilon] Processing NODE_9823_length_333_cov_18.985849:1-333 [pilon] NODE_13424_length_243_cov_19.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13424_length_243_cov_19.081967:1-243 [pilon] Processing NODE_2145_length_1047_cov_15.859611:1-1047 [pilon] NODE_10484_length_306_cov_5.956757:1-306 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 26, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10484_length_306_cov_5.956757:1-306 [pilon] Processing NODE_4901_length_626_cov_16.287129:1-626 [pilon] NODE_6282_length_519_cov_1.233668:1-519 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 15, Coverage: 4, minDepth: 5 [pilon] Confirmed 209 of 519 bases (40.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6282_length_519_cov_1.233668:1-519 [pilon] Processing NODE_2212_length_1031_cov_1.149451:1-1031 [pilon] NODE_13195_length_243_cov_21.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13195_length_243_cov_21.131148:1-243 [pilon] Processing NODE_4940_length_623_cov_2.687251:1-623 [pilon] NODE_2144_length_1047_cov_22.194384:1-1047 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 554, Coverage: 47, minDepth: 12 [pilon] Confirmed 837 of 1047 bases (79.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2144_length_1047_cov_22.194384:1-1047 [pilon] Processing NODE_3686_length_756_cov_25.929134:1-756 [pilon] NODE_10007_length_324_cov_39.935961:1-324 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 172, Coverage: 7, minDepth: 5 [pilon] Confirmed 166 of 324 bases (51.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10007_length_324_cov_39.935961:1-324 [pilon] Processing NODE_11476_length_264_cov_17.818182:1-264 [pilon] NODE_840_length_1604_cov_27.667566:1-1604 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 1016, Coverage: 71, minDepth: 18 [pilon] Confirmed 1108 of 1604 bases (69.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_840_length_1604_cov_27.667566:1-1604 [pilon] Processing NODE_5733_length_560_cov_27.808656:1-560 [pilon] NODE_4681_length_645_cov_7.786260:1-645 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 108, Coverage: 10, minDepth: 5 [pilon] Confirmed 217 of 645 bases (33.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4681_length_645_cov_7.786260:1-645 [pilon] Processing NODE_11593_length_261_cov_7.092857:1-261 [pilon] NODE_5650_length_567_cov_10.894619:1-567 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 109, Coverage: 18, minDepth: 5 [pilon] Confirmed 474 of 567 bases (83.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5650_length_567_cov_10.894619:1-567 [pilon] Processing NODE_100_length_3005_cov_19.912275:1-3005 [pilon] NODE_809_length_1622_cov_13.906063:1-1622 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 465, Coverage: 36, minDepth: 9 [pilon] Confirmed 1403 of 1622 bases (86.50%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_809_length_1622_cov_13.906063:1-1622 [pilon] Processing NODE_12690_length_243_cov_26.368852:1-243 [pilon] NODE_12070_length_245_cov_8.919355:1-245 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 29, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 245 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12070_length_245_cov_8.919355:1-245 [pilon] Processing NODE_1432_length_1287_cov_19.078045:1-1287 [pilon] NODE_2893_length_894_cov_3.981889:1-894 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 87, Coverage: 9, minDepth: 5 [pilon] Confirmed 668 of 894 bases (74.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2893_length_894_cov_3.981889:1-894 [pilon] Processing NODE_560_length_1847_cov_20.950174:1-1847 [pilon] NODE_4243_length_688_cov_22.673721:1-688 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 323, Coverage: 43, minDepth: 11 [pilon] Confirmed 574 of 688 bases (83.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4243_length_688_cov_22.673721:1-688 [pilon] Processing NODE_11881_length_249_cov_30.445312:1-249 [pilon] NODE_8258_length_406_cov_4.757895:1-406 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 34, Coverage: 9, minDepth: 5 [pilon] Confirmed 316 of 406 bases (77.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8258_length_406_cov_4.757895:1-406 [pilon] Processing NODE_4455_length_665_cov_42.012868:1-665 [pilon] NODE_8756_length_380_cov_9.791506:1-380 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 65, Coverage: 8, minDepth: 5 [pilon] Confirmed 160 of 380 bases (42.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8756_length_380_cov_9.791506:1-380 [pilon] Processing NODE_4134_length_700_cov_15.089810:1-700 [pilon] NODE_2077_length_1065_cov_25.200212:1-1065 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 547, Coverage: 56, minDepth: 14 [pilon] Confirmed 746 of 1065 bases (70.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2077_length_1065_cov_25.200212:1-1065 [pilon] Processing NODE_3597_length_769_cov_14.717593:1-769 [pilon] NODE_5633_length_568_cov_9.838926:1-568 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 110, Coverage: 16, minDepth: 5 [pilon] Confirmed 380 of 568 bases (66.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5633_length_568_cov_9.838926:1-568 [pilon] Processing NODE_5992_length_541_cov_38.240476:1-541 [pilon] NODE_6394_length_510_cov_45.848329:1-510 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 426, Coverage: 60, minDepth: 15 [pilon] Confirmed 421 of 510 bases (82.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6394_length_510_cov_45.848329:1-510 [pilon] Processing NODE_9134_length_360_cov_16.962343:1-360 [pilon] NODE_12893_length_243_cov_24.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12893_length_243_cov_24.131148:1-243 [pilon] Processing NODE_3840_length_735_cov_24.506515:1-735 [pilon] NODE_9823_length_333_cov_18.985849:1-333 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 90, Coverage: 10, minDepth: 5 [pilon] Confirmed 223 of 333 bases (66.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9823_length_333_cov_18.985849:1-333 [pilon] Processing NODE_8272_length_405_cov_24.545775:1-405 [pilon] NODE_11665_length_258_cov_9.992701:1-258 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 27, Coverage: 4, minDepth: 5 [pilon] Confirmed 123 of 258 bases (47.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11665_length_258_cov_9.992701:1-258 [pilon] Processing NODE_1752_length_1160_cov_2.905679:1-1160 [pilon] NODE_149_length_2729_cov_21.815567:1-2729 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1352, Coverage: 54, minDepth: 14 [pilon] Confirmed 2494 of 2729 bases (91.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_149_length_2729_cov_21.815567:1-2729 [pilon] Processing NODE_10032_length_324_cov_16.916256:1-324 [pilon] NODE_2334_length_1004_cov_1.635334:1-1004 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 434 of 1004 bases (43.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2334_length_1004_cov_1.635334:1-1004 [pilon] Processing NODE_14383_length_243_cov_11.180328:1-243 [pilon] NODE_2936_length_884_cov_25.086501:1-884 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 474, Coverage: 38, minDepth: 10 [pilon] Confirmed 668 of 884 bases (75.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2936_length_884_cov_25.086501:1-884 [pilon] Processing NODE_3909_length_726_cov_8.180165:1-726 [pilon] NODE_12453_length_243_cov_29.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12453_length_243_cov_29.836066:1-243 [pilon] Processing NODE_3172_length_837_cov_1.326816:1-837 [pilon] NODE_247_length_2350_cov_22.052490:1-2350 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 1189, Coverage: 41, minDepth: 10 [pilon] Confirmed 1966 of 2350 bases (83.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_247_length_2350_cov_22.052490:1-2350 [pilon] Processing NODE_11628_length_258_cov_23.759124:1-258 [pilon] NODE_7902_length_423_cov_1.672185:1-423 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 18, Coverage: 6, minDepth: 5 [pilon] Confirmed 284 of 423 bases (67.14%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7902_length_423_cov_1.672185:1-423 [pilon] Processing NODE_11791_length_253_cov_14.371212:1-253 [pilon] NODE_5239_length_597_cov_15.947479:1-597 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 169, Coverage: 17, minDepth: 5 [pilon] Confirmed 379 of 597 bases (63.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5239_length_597_cov_15.947479:1-597 [pilon] Processing NODE_7989_length_419_cov_1.187919:1-419 [pilon] NODE_10155_length_318_cov_80.776650:1-318 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 344, Coverage: 54, minDepth: 14 [pilon] Confirmed 282 of 318 bases (88.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10155_length_318_cov_80.776650:1-318 [pilon] Processing NODE_4504_length_661_cov_39.338889:1-661 [pilon] NODE_100_length_3005_cov_19.912275:1-3005 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 1314, Coverage: 56, minDepth: 14 [pilon] Confirmed 2686 of 3005 bases (89.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_100_length_3005_cov_19.912275:1-3005 [pilon] Processing NODE_12303_length_243_cov_33.122951:1-243 [pilon] NODE_4901_length_626_cov_16.287129:1-626 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 201, Coverage: 23, minDepth: 6 [pilon] Confirmed 527 of 626 bases (84.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4901_length_626_cov_16.287129:1-626 [pilon] Processing NODE_5420_length_582_cov_31.069414:1-582 [pilon] NODE_4940_length_623_cov_2.687251:1-623 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 38, Coverage: 8, minDepth: 5 [pilon] Confirmed 437 of 623 bases (70.14%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4940_length_623_cov_2.687251:1-623 [pilon] Processing NODE_609_length_1798_cov_1.286225:1-1798 [pilon] NODE_2145_length_1047_cov_15.859611:1-1047 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 368, Coverage: 29, minDepth: 7 [pilon] Confirmed 791 of 1047 bases (75.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2145_length_1047_cov_15.859611:1-1047 [pilon] Processing NODE_4628_length_650_cov_1.149338:1-650 [pilon] NODE_3686_length_756_cov_25.929134:1-756 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 413, Coverage: 54, minDepth: 14 [pilon] Confirmed 482 of 756 bases (63.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3686_length_756_cov_25.929134:1-756 [pilon] NODE_2212_length_1031_cov_1.149451:1-1031 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 41, Coverage: 5, minDepth: 5 [pilon] Confirmed 468 of 1031 bases (45.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_14547_length_243_cov_9.918033:1-243 [pilon] Finished processing NODE_2212_length_1031_cov_1.149451:1-1031 [pilon] Processing NODE_13347_length_243_cov_19.860656:1-243 [pilon] NODE_11593_length_261_cov_7.092857:1-261 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11593_length_261_cov_7.092857:1-261 [pilon] Processing NODE_9237_length_356_cov_42.604255:1-356 [pilon] NODE_11476_length_264_cov_17.818182:1-264 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 55, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11476_length_264_cov_17.818182:1-264 [pilon] Processing NODE_8108_length_413_cov_3.078767:1-413 [pilon] NODE_5733_length_560_cov_27.808656:1-560 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 300, Coverage: 46, minDepth: 12 [pilon] Confirmed 433 of 560 bases (77.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5733_length_560_cov_27.808656:1-560 [pilon] Processing NODE_3442_length_792_cov_26.301043:1-792 [pilon] NODE_12690_length_243_cov_26.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12690_length_243_cov_26.368852:1-243 [pilon] Processing NODE_9133_length_360_cov_16.970711:1-360 [pilon] NODE_11881_length_249_cov_30.445312:1-249 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 79, Coverage: 11, minDepth: 5 [pilon] Confirmed 215 of 249 bases (86.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11881_length_249_cov_30.445312:1-249 [pilon] Processing NODE_6623_length_495_cov_41.965241:1-495 [pilon] NODE_14383_length_243_cov_11.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14383_length_243_cov_11.180328:1-243 [pilon] Processing NODE_8719_length_381_cov_20.226923:1-381 [pilon] NODE_1432_length_1287_cov_19.078045:1-1287 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 524, Coverage: 45, minDepth: 11 [pilon] Confirmed 1081 of 1287 bases (83.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1432_length_1287_cov_19.078045:1-1287 [pilon] Processing NODE_9461_length_348_cov_8.123348:1-348 [pilon] NODE_560_length_1847_cov_20.950174:1-1847 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 929, Coverage: 54, minDepth: 14 [pilon] Confirmed 1382 of 1847 bases (74.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_560_length_1847_cov_20.950174:1-1847 [pilon] Processing NODE_8958_length_368_cov_66.611336:1-368 [pilon] NODE_11628_length_258_cov_23.759124:1-258 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 71, Coverage: 9, minDepth: 5 [pilon] Confirmed 223 of 258 bases (86.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11628_length_258_cov_23.759124:1-258 [pilon] Processing NODE_14316_length_243_cov_11.729508:1-243 [pilon] NODE_4455_length_665_cov_42.012868:1-665 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 506, Coverage: 84, minDepth: 21 [pilon] Confirmed 576 of 665 bases (86.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4455_length_665_cov_42.012868:1-665 [pilon] Processing NODE_11907_length_249_cov_16.945312:1-249 [pilon] NODE_3597_length_769_cov_14.717593:1-769 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 233, Coverage: 21, minDepth: 5 [pilon] Confirmed 727 of 769 bases (94.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_4134_length_700_cov_15.089810:1-700 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 274, Coverage: 22, minDepth: 6 [pilon] Confirmed 640 of 700 bases (91.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4134_length_700_cov_15.089810:1-700 [pilon] Finished processing NODE_3597_length_769_cov_14.717593:1-769 [pilon] Processing NODE_11414_length_267_cov_14.993151:1-267 [pilon] Processing NODE_2393_length_991_cov_19.044828:1-991 [pilon] NODE_8272_length_405_cov_24.545775:1-405 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 144, Coverage: 20, minDepth: 5 [pilon] Confirmed 311 of 405 bases (76.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8272_length_405_cov_24.545775:1-405 [pilon] Processing NODE_8517_length_393_cov_13.455882:1-393 [pilon] NODE_9134_length_360_cov_16.962343:1-360 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 88, Coverage: 2, minDepth: 5 [pilon] Confirmed 114 of 360 bases (31.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9134_length_360_cov_16.962343:1-360 [pilon] Processing NODE_185_length_2557_cov_16.428571:1-2557 [pilon] NODE_5992_length_541_cov_38.240476:1-541 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 425, Coverage: 50, minDepth: 13 [pilon] Confirmed 292 of 541 bases (53.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5992_length_541_cov_38.240476:1-541 [pilon] Processing NODE_15269_length_122_cov_1.000000:1-122 [pilon] NODE_3840_length_735_cov_24.506515:1-735 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 333, Coverage: 35, minDepth: 9 [pilon] Confirmed 562 of 735 bases (76.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3840_length_735_cov_24.506515:1-735 [pilon] Processing NODE_7246_length_457_cov_18.595238:1-457 [pilon] NODE_1752_length_1160_cov_2.905679:1-1160 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 77, Coverage: 9, minDepth: 5 [pilon] Confirmed 651 of 1160 bases (56.12%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1752_length_1160_cov_2.905679:1-1160 [pilon] Processing NODE_4632_length_649_cov_11.638258:1-649 [pilon] NODE_10032_length_324_cov_16.916256:1-324 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 83, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 324 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10032_length_324_cov_16.916256:1-324 [pilon] Processing NODE_1240_length_1370_cov_3.060849:1-1370 [pilon] NODE_3909_length_726_cov_8.180165:1-726 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 143, Coverage: 25, minDepth: 6 [pilon] Confirmed 527 of 726 bases (72.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3909_length_726_cov_8.180165:1-726 [pilon] Processing NODE_8231_length_407_cov_13.083916:1-407 [pilon] NODE_7989_length_419_cov_1.187919:1-419 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 69 of 419 bases (16.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7989_length_419_cov_1.187919:1-419 [pilon] Processing NODE_3789_length_742_cov_2.507246:1-742 [pilon] NODE_11791_length_253_cov_14.371212:1-253 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 45, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 253 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11791_length_253_cov_14.371212:1-253 [pilon] Processing NODE_11071_length_280_cov_22.283019:1-280 [pilon] NODE_3172_length_837_cov_1.326816:1-837 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 31, Coverage: 5, minDepth: 5 [pilon] Confirmed 398 of 837 bases (47.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3172_length_837_cov_1.326816:1-837 [pilon] Processing NODE_5181_length_603_cov_12.605809:1-603 [pilon] NODE_4504_length_661_cov_39.338889:1-661 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 520, Coverage: 74, minDepth: 19 [pilon] Confirmed 476 of 661 bases (72.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4504_length_661_cov_39.338889:1-661 [pilon] Processing NODE_5339_length_590_cov_2.931770:1-590 [pilon] NODE_12303_length_243_cov_33.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12303_length_243_cov_33.122951:1-243 [pilon] Processing NODE_1298_length_1341_cov_24.997541:1-1341 [pilon] NODE_5420_length_582_cov_31.069414:1-582 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 333, Coverage: 53, minDepth: 13 [pilon] Confirmed 503 of 582 bases (86.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5420_length_582_cov_31.069414:1-582 [pilon] Processing NODE_4613_length_651_cov_42.813208:1-651 [pilon] NODE_4628_length_650_cov_1.149338:1-650 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 278 of 650 bases (42.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4628_length_650_cov_1.149338:1-650 [pilon] Processing NODE_10580_length_302_cov_16.762431:1-302 [pilon] NODE_13347_length_243_cov_19.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13347_length_243_cov_19.860656:1-243 [pilon] Processing NODE_9243_length_356_cov_23.655319:1-356 [pilon] NODE_609_length_1798_cov_1.286225:1-1798 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 79, Coverage: 6, minDepth: 5 [pilon] Confirmed 892 of 1798 bases (49.61%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_609_length_1798_cov_1.286225:1-1798 [pilon] Processing NODE_6445_length_507_cov_18.948187:1-507 [pilon] NODE_8108_length_413_cov_3.078767:1-413 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 29, Coverage: 9, minDepth: 5 [pilon] Confirmed 300 of 413 bases (72.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8108_length_413_cov_3.078767:1-413 [pilon] Processing NODE_4233_length_689_cov_12.193662:1-689 [pilon] NODE_14547_length_243_cov_9.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14547_length_243_cov_9.918033:1-243 [pilon] Processing NODE_11910_length_249_cov_15.781250:1-249 [pilon] NODE_9237_length_356_cov_42.604255:1-356 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 218, Coverage: 41, minDepth: 10 [pilon] Confirmed 319 of 356 bases (89.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9237_length_356_cov_42.604255:1-356 [pilon] Processing NODE_6287_length_518_cov_49.287154:1-518 [pilon] NODE_3442_length_792_cov_26.301043:1-792 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 446, Coverage: 37, minDepth: 9 [pilon] Confirmed 577 of 792 bases (72.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3442_length_792_cov_26.301043:1-792 [pilon] Processing NODE_6525_length_502_cov_1.057743:1-502 [pilon] NODE_9133_length_360_cov_16.970711:1-360 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 71, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 360 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9133_length_360_cov_16.970711:1-360 [pilon] Processing NODE_7804_length_427_cov_13.565359:1-427 [pilon] NODE_6623_length_495_cov_41.965241:1-495 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 376, Coverage: 52, minDepth: 13 [pilon] Confirmed 345 of 495 bases (69.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6623_length_495_cov_41.965241:1-495 [pilon] Processing NODE_12871_length_243_cov_24.295082:1-243 [pilon] NODE_9461_length_348_cov_8.123348:1-348 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 42, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 348 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9461_length_348_cov_8.123348:1-348 [pilon] Processing NODE_4345_length_676_cov_23.524324:1-676 [pilon] NODE_8719_length_381_cov_20.226923:1-381 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 120, Coverage: 11, minDepth: 5 [pilon] Confirmed 233 of 381 bases (61.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8719_length_381_cov_20.226923:1-381 [pilon] Processing NODE_350_length_2127_cov_3.560818:1-2127 [pilon] NODE_8958_length_368_cov_66.611336:1-368 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 371, Coverage: 67, minDepth: 17 [pilon] Confirmed 323 of 368 bases (87.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8958_length_368_cov_66.611336:1-368 [pilon] Processing NODE_14467_length_243_cov_10.524590:1-243 [pilon] NODE_11414_length_267_cov_14.993151:1-267 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 54, Coverage: 3, minDepth: 5 [pilon] Confirmed 78 of 267 bases (29.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11414_length_267_cov_14.993151:1-267 [pilon] Processing NODE_8448_length_397_cov_10.246377:1-397 [pilon] NODE_11907_length_249_cov_16.945312:1-249 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 48, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11907_length_249_cov_16.945312:1-249 [pilon] Processing NODE_14662_length_243_cov_8.934426:1-243 [pilon] NODE_14316_length_243_cov_11.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14316_length_243_cov_11.729508:1-243 [pilon] Processing NODE_14676_length_243_cov_8.762295:1-243 [pilon] NODE_8517_length_393_cov_13.455882:1-393 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 94, Coverage: 8, minDepth: 5 [pilon] Confirmed 291 of 393 bases (74.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8517_length_393_cov_13.455882:1-393 [pilon] Processing NODE_15187_length_165_cov_6.068182:1-165 [pilon] NODE_15269_length_122_cov_1.000000:1-122 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 122 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15269_length_122_cov_1.000000:1-122 [pilon] Processing NODE_10386_length_309_cov_18.148936:1-309 [pilon] NODE_185_length_2557_cov_16.428571:1-2557 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 1045, Coverage: 50, minDepth: 13 [pilon] Confirmed 2265 of 2557 bases (88.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_185_length_2557_cov_16.428571:1-2557 [pilon] Processing NODE_7532_length_441_cov_31.503125:1-441 [pilon] NODE_2393_length_991_cov_19.044828:1-991 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 356, Coverage: 23, minDepth: 6 [pilon] Confirmed 722 of 991 bases (72.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2393_length_991_cov_19.044828:1-991 [pilon] Processing NODE_3006_length_872_cov_8.585885:1-872 [pilon] NODE_5339_length_590_cov_2.931770:1-590 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 42, Coverage: 9, minDepth: 5 [pilon] Confirmed 437 of 590 bases (74.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5339_length_590_cov_2.931770:1-590 [pilon] Processing NODE_4654_length_648_cov_2.557875:1-648 [pilon] NODE_4632_length_649_cov_11.638258:1-649 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 142, Coverage: 21, minDepth: 5 [pilon] Confirmed 528 of 649 bases (81.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4632_length_649_cov_11.638258:1-649 [pilon] Processing NODE_6336_length_514_cov_43.498728:1-514 [pilon] NODE_3789_length_742_cov_2.507246:1-742 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 50, Coverage: 8, minDepth: 5 [pilon] Confirmed 508 of 742 bases (68.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3789_length_742_cov_2.507246:1-742 [pilon] Processing NODE_4286_length_683_cov_3.281139:1-683 [pilon] NODE_5181_length_603_cov_12.605809:1-603 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 139, Coverage: 17, minDepth: 5 [pilon] Confirmed 441 of 603 bases (73.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5181_length_603_cov_12.605809:1-603 [pilon] Processing NODE_4785_length_636_cov_23.990291:1-636 [pilon] NODE_1240_length_1370_cov_3.060849:1-1370 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 95, Coverage: 9, minDepth: 5 [pilon] Confirmed 992 of 1370 bases (72.41%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1240_length_1370_cov_3.060849:1-1370 [pilon] Processing NODE_7291_length_455_cov_2.724551:1-455 [pilon] NODE_11071_length_280_cov_22.283019:1-280 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 68, Coverage: 10, minDepth: 5 [pilon] Confirmed 231 of 280 bases (82.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11071_length_280_cov_22.283019:1-280 [pilon] Processing NODE_12199_length_243_cov_36.786885:1-243 [pilon] NODE_7246_length_457_cov_18.595238:1-457 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 173, Coverage: 19, minDepth: 5 [pilon] Confirmed 395 of 457 bases (86.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7246_length_457_cov_18.595238:1-457 [pilon] Processing NODE_14477_length_243_cov_10.434426:1-243 [pilon] NODE_8231_length_407_cov_13.083916:1-407 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 91, Coverage: 8, minDepth: 5 [pilon] Confirmed 217 of 407 bases (53.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8231_length_407_cov_13.083916:1-407 [pilon] Processing NODE_8369_length_402_cov_1.736655:1-402 [pilon] NODE_1298_length_1341_cov_24.997541:1-1341 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 790, Coverage: 31, minDepth: 8 [pilon] Confirmed 1026 of 1341 bases (76.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1298_length_1341_cov_24.997541:1-1341 [pilon] Processing NODE_338_length_2142_cov_2.984661:1-2142 [pilon] NODE_10580_length_302_cov_16.762431:1-302 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 61, Coverage: 4, minDepth: 5 [pilon] Confirmed 122 of 302 bases (40.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10580_length_302_cov_16.762431:1-302 [pilon] Processing NODE_9872_length_330_cov_32.330144:1-330 [pilon] NODE_4613_length_651_cov_42.813208:1-651 log: [pilon] frags shovill.bam: coverage 83 [pilon] Total Reads: 569, Coverage: 83, minDepth: 21 [pilon] Confirmed 601 of 651 bases (92.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4613_length_651_cov_42.813208:1-651 [pilon] Processing NODE_13413_length_243_cov_19.155738:1-243 [pilon] NODE_9243_length_356_cov_23.655319:1-356 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 136, Coverage: 2, minDepth: 5 [pilon] Confirmed 110 of 356 bases (30.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9243_length_356_cov_23.655319:1-356 [pilon] Processing NODE_7434_length_446_cov_61.261538:1-446 [pilon] NODE_350_length_2127_cov_3.560818:1-2127 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 198, Coverage: 12, minDepth: 5 [pilon] Confirmed 1867 of 2127 bases (87.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_350_length_2127_cov_3.560818:1-2127 [pilon] Processing NODE_1268_length_1355_cov_26.850891:1-1355 [pilon] NODE_6445_length_507_cov_18.948187:1-507 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 161, Coverage: 17, minDepth: 5 [pilon] Confirmed 377 of 507 bases (74.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6445_length_507_cov_18.948187:1-507 [pilon] Processing NODE_4228_length_690_cov_2.850615:1-690 [pilon] NODE_4233_length_689_cov_12.193662:1-689 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 204, Coverage: 19, minDepth: 5 [pilon] Confirmed 497 of 689 bases (72.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4233_length_689_cov_12.193662:1-689 [pilon] Processing NODE_354_length_2119_cov_5.273273:1-2119 [pilon] NODE_11910_length_249_cov_15.781250:1-249 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 50, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11910_length_249_cov_15.781250:1-249 [pilon] Processing NODE_1723_length_1172_cov_17.700285:1-1172 [pilon] NODE_7804_length_427_cov_13.565359:1-427 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 85, Coverage: 12, minDepth: 5 [pilon] Confirmed 332 of 427 bases (77.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7804_length_427_cov_13.565359:1-427 [pilon] Processing NODE_5162_length_605_cov_4.867769:1-605 [pilon] NODE_6525_length_502_cov_1.057743:1-502 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 224 of 502 bases (44.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6525_length_502_cov_1.057743:1-502 [pilon] Processing NODE_7176_length_461_cov_2.805882:1-461 [pilon] NODE_6287_length_518_cov_49.287154:1-518 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 419, Coverage: 69, minDepth: 17 [pilon] Confirmed 452 of 518 bases (87.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6287_length_518_cov_49.287154:1-518 [pilon] Processing NODE_4871_length_629_cov_13.350394:1-629 [pilon] NODE_4345_length_676_cov_23.524324:1-676 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 287, Coverage: 35, minDepth: 9 [pilon] Confirmed 587 of 676 bases (86.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4345_length_676_cov_23.524324:1-676 [pilon] Processing NODE_10790_length_294_cov_11.092486:1-294 [pilon] NODE_14467_length_243_cov_10.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14467_length_243_cov_10.524590:1-243 [pilon] Processing NODE_12764_length_243_cov_25.426230:1-243 [pilon] NODE_15187_length_165_cov_6.068182:1-165 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 165 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15187_length_165_cov_6.068182:1-165 [pilon] Processing NODE_7478_length_444_cov_17.204334:1-444 [pilon] NODE_14676_length_243_cov_8.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14676_length_243_cov_8.762295:1-243 [pilon] Processing NODE_9987_length_326_cov_20.634146:1-326 [pilon] NODE_12871_length_243_cov_24.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12871_length_243_cov_24.295082:1-243 [pilon] Processing NODE_2951_length_881_cov_19.477632:1-881 [pilon] NODE_8448_length_397_cov_10.246377:1-397 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 70, Coverage: 9, minDepth: 5 [pilon] Confirmed 255 of 397 bases (64.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8448_length_397_cov_10.246377:1-397 [pilon] Processing NODE_12247_length_243_cov_34.729508:1-243 [pilon] NODE_14662_length_243_cov_8.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14662_length_243_cov_8.934426:1-243 [pilon] Processing NODE_1348_length_1321_cov_2.091667:1-1321 [pilon] NODE_3006_length_872_cov_8.585885:1-872 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 189, Coverage: 17, minDepth: 5 [pilon] Confirmed 781 of 872 bases (89.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3006_length_872_cov_8.585885:1-872 [pilon] Processing NODE_9118_length_360_cov_26.974895:1-360 [pilon] NODE_7532_length_441_cov_31.503125:1-441 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 193, Coverage: 13, minDepth: 5 [pilon] Confirmed 258 of 441 bases (58.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7532_length_441_cov_31.503125:1-441 [pilon] Processing NODE_12853_length_243_cov_24.491803:1-243 [pilon] NODE_10386_length_309_cov_18.148936:1-309 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 74, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 309 bases (42.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10386_length_309_cov_18.148936:1-309 [pilon] Processing NODE_12696_length_243_cov_26.295082:1-243 [pilon] NODE_7291_length_455_cov_2.724551:1-455 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 25, Coverage: 7, minDepth: 5 [pilon] Confirmed 338 of 455 bases (74.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7291_length_455_cov_2.724551:1-455 [pilon] Processing NODE_13485_length_243_cov_18.508197:1-243 [pilon] NODE_4654_length_648_cov_2.557875:1-648 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 487 of 648 bases (75.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4654_length_648_cov_2.557875:1-648 [pilon] Processing NODE_11235_length_274_cov_10.418301:1-274 [pilon] NODE_6336_length_514_cov_43.498728:1-514 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 396, Coverage: 69, minDepth: 17 [pilon] Confirmed 444 of 514 bases (86.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6336_length_514_cov_43.498728:1-514 [pilon] Processing NODE_14827_length_243_cov_7.450820:1-243 [pilon] NODE_13413_length_243_cov_19.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13413_length_243_cov_19.155738:1-243 [pilon] Processing NODE_11522_length_263_cov_14.197183:1-263 [pilon] NODE_4785_length_636_cov_23.990291:1-636 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 300, Coverage: 26, minDepth: 7 [pilon] Confirmed 445 of 636 bases (69.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4785_length_636_cov_23.990291:1-636 [pilon] Processing NODE_2242_length_1022_cov_13.077691:1-1022 [pilon] NODE_14477_length_243_cov_10.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14477_length_243_cov_10.434426:1-243 [pilon] Processing NODE_3704_length_754_cov_4.078989:1-754 [pilon] NODE_4286_length_683_cov_3.281139:1-683 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 52, Coverage: 10, minDepth: 5 [pilon] Confirmed 538 of 683 bases (78.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4286_length_683_cov_3.281139:1-683 [pilon] Processing NODE_807_length_1624_cov_3.779108:1-1624 [pilon] NODE_12199_length_243_cov_36.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12199_length_243_cov_36.786885:1-243 [pilon] Processing NODE_12903_length_243_cov_24.049180:1-243 [pilon] NODE_8369_length_402_cov_1.736655:1-402 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 8, Coverage: 3, minDepth: 5 [pilon] Confirmed 47 of 402 bases (11.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8369_length_402_cov_1.736655:1-402 [pilon] Processing NODE_15177_length_171_cov_10.440000:1-171 [pilon] NODE_7434_length_446_cov_61.261538:1-446 log: [pilon] frags shovill.bam: coverage 87 [pilon] Total Reads: 451, Coverage: 87, minDepth: 22 [pilon] Confirmed 392 of 446 bases (87.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7434_length_446_cov_61.261538:1-446 [pilon] Processing NODE_13332_length_243_cov_19.967213:1-243 [pilon] NODE_1268_length_1355_cov_26.850891:1-1355 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 784, Coverage: 62, minDepth: 16 [pilon] Confirmed 963 of 1355 bases (71.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1268_length_1355_cov_26.850891:1-1355 [pilon] Processing NODE_6842_length_481_cov_2.686111:1-481 [pilon] NODE_338_length_2142_cov_2.984661:1-2142 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 141, Coverage: 8, minDepth: 5 [pilon] Confirmed 1668 of 2142 bases (77.87%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_338_length_2142_cov_2.984661:1-2142 [pilon] Processing NODE_2306_length_1009_cov_9.311937:1-1009 [pilon] NODE_9872_length_330_cov_32.330144:1-330 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 174, Coverage: 25, minDepth: 6 [pilon] Confirmed 278 of 330 bases (84.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9872_length_330_cov_32.330144:1-330 [pilon] Processing NODE_1743_length_1163_cov_15.144914:1-1163 [pilon] NODE_1723_length_1172_cov_17.700285:1-1172 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 474, Coverage: 45, minDepth: 11 [pilon] Confirmed 932 of 1172 bases (79.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1723_length_1172_cov_17.700285:1-1172 [pilon] Processing NODE_7852_length_425_cov_2.575658:1-425 [pilon] NODE_4228_length_690_cov_2.850615:1-690 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 326 of 690 bases (47.25%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4228_length_690_cov_2.850615:1-690 [pilon] Processing NODE_660_length_1738_cov_2.512059:1-1738 [pilon] NODE_5162_length_605_cov_4.867769:1-605 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 61, Coverage: 13, minDepth: 5 [pilon] Confirmed 494 of 605 bases (81.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5162_length_605_cov_4.867769:1-605 [pilon] Processing NODE_12393_length_243_cov_31.204918:1-243 [pilon] NODE_354_length_2119_cov_5.273273:1-2119 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 248, Coverage: 15, minDepth: 5 [pilon] Confirmed 1933 of 2119 bases (91.22%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_354_length_2119_cov_5.273273:1-2119 [pilon] Processing NODE_3826_length_738_cov_5.940032:1-738 [pilon] NODE_4871_length_629_cov_13.350394:1-629 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 179, Coverage: 14, minDepth: 5 [pilon] Confirmed 477 of 629 bases (75.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4871_length_629_cov_13.350394:1-629 [pilon] Processing NODE_8570_length_390_cov_11.672862:1-390 [pilon] NODE_7176_length_461_cov_2.805882:1-461 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 48, Coverage: 9, minDepth: 5 [pilon] Confirmed 363 of 461 bases (78.74%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7176_length_461_cov_2.805882:1-461 [pilon] Processing NODE_12874_length_243_cov_24.270492:1-243 [pilon] NODE_7478_length_444_cov_17.204334:1-444 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 119, Coverage: 22, minDepth: 6 [pilon] Confirmed 371 of 444 bases (83.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7478_length_444_cov_17.204334:1-444 [pilon] Processing NODE_1087_length_1448_cov_1.212509:1-1448 [pilon] NODE_11522_length_263_cov_14.197183:1-263 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 38, Coverage: 5, minDepth: 5 [pilon] Confirmed 140 of 263 bases (53.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11522_length_263_cov_14.197183:1-263 [pilon] Processing NODE_8055_length_415_cov_16.006803:1-415 [pilon] NODE_12764_length_243_cov_25.426230:1-243 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 73, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12764_length_243_cov_25.426230:1-243 [pilon] Processing NODE_10822_length_291_cov_27.229412:1-291 [pilon] NODE_10790_length_294_cov_11.092486:1-294 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 294 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10790_length_294_cov_11.092486:1-294 [pilon] Processing NODE_14600_length_243_cov_9.393443:1-243 [pilon] NODE_2951_length_881_cov_19.477632:1-881 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 350, Coverage: 26, minDepth: 7 [pilon] Confirmed 721 of 881 bases (81.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2951_length_881_cov_19.477632:1-881 [pilon] Processing NODE_14766_length_243_cov_7.991803:1-243 [pilon] NODE_12247_length_243_cov_34.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12247_length_243_cov_34.729508:1-243 [pilon] Processing NODE_12645_length_243_cov_26.909836:1-243 [pilon] NODE_9987_length_326_cov_20.634146:1-326 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 58, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 326 bases (39.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9987_length_326_cov_20.634146:1-326 [pilon] Processing NODE_10440_length_306_cov_25.167568:1-306 [pilon] NODE_1348_length_1321_cov_2.091667:1-1321 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 78, Coverage: 8, minDepth: 5 [pilon] Confirmed 860 of 1321 bases (65.10%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1348_length_1321_cov_2.091667:1-1321 [pilon] Processing NODE_12100_length_244_cov_7.512195:1-244 [pilon] NODE_9118_length_360_cov_26.974895:1-360 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 154, Coverage: 23, minDepth: 6 [pilon] Confirmed 323 of 360 bases (89.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9118_length_360_cov_26.974895:1-360 [pilon] Processing NODE_1733_length_1169_cov_2.956107:1-1169 [pilon] NODE_6842_length_481_cov_2.686111:1-481 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 27, Coverage: 7, minDepth: 5 [pilon] Confirmed 320 of 481 bases (66.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6842_length_481_cov_2.686111:1-481 [pilon] Processing NODE_4943_length_623_cov_1.404382:1-623 [pilon] NODE_12853_length_243_cov_24.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12853_length_243_cov_24.491803:1-243 [pilon] Processing NODE_11131_length_279_cov_9.006329:1-279 [pilon] NODE_12696_length_243_cov_26.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12696_length_243_cov_26.295082:1-243 [pilon] Processing NODE_4464_length_664_cov_37.051565:1-664 [pilon] NODE_11235_length_274_cov_10.418301:1-274 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 34, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 274 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11235_length_274_cov_10.418301:1-274 [pilon] Processing NODE_14693_length_243_cov_8.639344:1-243 [pilon] NODE_13485_length_243_cov_18.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13485_length_243_cov_18.508197:1-243 [pilon] Processing NODE_5670_length_565_cov_21.673423:1-565 [pilon] NODE_14827_length_243_cov_7.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14827_length_243_cov_7.450820:1-243 [pilon] Processing NODE_1860_length_1126_cov_3.175124:1-1126 [pilon] NODE_13332_length_243_cov_19.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13332_length_243_cov_19.967213:1-243 [pilon] Processing NODE_5531_length_575_cov_14.889868:1-575 [pilon] NODE_2242_length_1022_cov_13.077691:1-1022 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 267, Coverage: 24, minDepth: 6 [pilon] Confirmed 816 of 1022 bases (79.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2242_length_1022_cov_13.077691:1-1022 [pilon] Processing NODE_7153_length_462_cov_24.741935:1-462 [pilon] NODE_807_length_1624_cov_3.779108:1-1624 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 153, Coverage: 12, minDepth: 5 [pilon] Confirmed 1388 of 1624 bases (85.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_807_length_1624_cov_3.779108:1-1624 [pilon] Processing NODE_1363_length_1312_cov_15.183879:1-1312 [pilon] NODE_7852_length_425_cov_2.575658:1-425 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 23, Coverage: 6, minDepth: 5 [pilon] Confirmed 269 of 425 bases (63.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7852_length_425_cov_2.575658:1-425 [pilon] Processing NODE_12294_length_243_cov_33.327869:1-243 [pilon] NODE_12903_length_243_cov_24.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12903_length_243_cov_24.049180:1-243 [pilon] Processing NODE_10192_length_318_cov_9.685279:1-318 [pilon] NODE_3704_length_754_cov_4.078989:1-754 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 70, Coverage: 12, minDepth: 5 [pilon] Confirmed 602 of 754 bases (79.84%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3704_length_754_cov_4.078989:1-754 [pilon] Processing NODE_3868_length_732_cov_11.490998:1-732 [pilon] NODE_15177_length_171_cov_10.440000:1-171 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 171 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15177_length_171_cov_10.440000:1-171 [pilon] Processing NODE_711_length_1695_cov_30.069886:1-1695 [pilon] NODE_2306_length_1009_cov_9.311937:1-1009 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 204, Coverage: 16, minDepth: 5 [pilon] Confirmed 910 of 1009 bases (90.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2306_length_1009_cov_9.311937:1-1009 [pilon] Processing NODE_12000_length_246_cov_18.560000:1-246 [pilon] NODE_1743_length_1163_cov_15.144914:1-1163 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 472, Coverage: 40, minDepth: 10 [pilon] Confirmed 963 of 1163 bases (82.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1743_length_1163_cov_15.144914:1-1163 [pilon] Processing NODE_3190_length_834_cov_3.001403:1-834 [pilon] NODE_8055_length_415_cov_16.006803:1-415 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 98, Coverage: 15, minDepth: 5 [pilon] Confirmed 326 of 415 bases (78.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8055_length_415_cov_16.006803:1-415 [pilon] Processing NODE_3796_length_741_cov_14.112903:1-741 [pilon] NODE_3826_length_738_cov_5.940032:1-738 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 98, Coverage: 17, minDepth: 5 [pilon] Confirmed 497 of 738 bases (67.34%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3826_length_738_cov_5.940032:1-738 [pilon] Processing NODE_5435_length_582_cov_1.550976:1-582 [pilon] NODE_660_length_1738_cov_2.512059:1-1738 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 117, Coverage: 8, minDepth: 5 [pilon] Confirmed 1241 of 1738 bases (71.40%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_660_length_1738_cov_2.512059:1-1738 [pilon] Processing NODE_4602_length_653_cov_1.101504:1-653 [pilon] NODE_12393_length_243_cov_31.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 84, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12393_length_243_cov_31.204918:1-243 [pilon] Processing NODE_4194_length_694_cov_18.696335:1-694 [pilon] NODE_4943_length_623_cov_1.404382:1-623 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 25, Coverage: 5, minDepth: 5 [pilon] Confirmed 353 of 623 bases (56.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4943_length_623_cov_1.404382:1-623 [pilon] Processing NODE_4978_length_620_cov_10.687375:1-620 [pilon] NODE_8570_length_390_cov_11.672862:1-390 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 73, Coverage: 10, minDepth: 5 [pilon] Confirmed 259 of 390 bases (66.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8570_length_390_cov_11.672862:1-390 [pilon] Processing NODE_7594_length_438_cov_8.921136:1-438 [pilon] NODE_12874_length_243_cov_24.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12874_length_243_cov_24.270492:1-243 [pilon] Processing NODE_5507_length_576_cov_38.015385:1-576 [pilon] NODE_10822_length_291_cov_27.229412:1-291 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 109, Coverage: 14, minDepth: 5 [pilon] Confirmed 204 of 291 bases (70.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10822_length_291_cov_27.229412:1-291 [pilon] Processing NODE_930_length_1541_cov_16.499296:1-1541 [pilon] NODE_1087_length_1448_cov_1.212509:1-1448 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 58, Coverage: 5, minDepth: 5 [pilon] Confirmed 674 of 1448 bases (46.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1087_length_1448_cov_1.212509:1-1448 [pilon] Processing NODE_2092_length_1061_cov_22.100000:1-1061 [pilon] NODE_14766_length_243_cov_7.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14766_length_243_cov_7.991803:1-243 [pilon] Processing NODE_13666_length_243_cov_16.819672:1-243 [pilon] NODE_14600_length_243_cov_9.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14600_length_243_cov_9.393443:1-243 [pilon] Processing NODE_4660_length_647_cov_20.374525:1-647 [pilon] NODE_12100_length_244_cov_7.512195:1-244 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12645_length_243_cov_26.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12645_length_243_cov_26.909836:1-243 [pilon] Finished processing NODE_12100_length_244_cov_7.512195:1-244 [pilon] Processing NODE_581_length_1828_cov_22.224370:1-1828 [pilon] Processing NODE_7500_length_443_cov_15.754658:1-443 [pilon] NODE_10440_length_306_cov_25.167568:1-306 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 94, Coverage: 13, minDepth: 5 [pilon] Confirmed 232 of 306 bases (75.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10440_length_306_cov_25.167568:1-306 [pilon] Processing NODE_520_length_1898_cov_15.275183:1-1898 [pilon] NODE_12294_length_243_cov_33.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12294_length_243_cov_33.327869:1-243 [pilon] Processing NODE_1360_length_1313_cov_15.760067:1-1313 [pilon] NODE_1733_length_1169_cov_2.956107:1-1169 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 84, Coverage: 9, minDepth: 5 [pilon] Confirmed 970 of 1169 bases (82.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1733_length_1169_cov_2.956107:1-1169 [pilon] Processing NODE_10769_length_294_cov_24.843931:1-294 [pilon] NODE_11131_length_279_cov_9.006329:1-279 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11131_length_279_cov_9.006329:1-279 [pilon] Processing NODE_7457_length_445_cov_47.317901:1-445 [pilon] NODE_4464_length_664_cov_37.051565:1-664 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 463, Coverage: 66, minDepth: 17 [pilon] Confirmed 565 of 664 bases (85.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4464_length_664_cov_37.051565:1-664 [pilon] Processing NODE_10688_length_298_cov_23.615819:1-298 [pilon] NODE_14693_length_243_cov_8.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14693_length_243_cov_8.639344:1-243 [pilon] Processing NODE_8854_length_374_cov_24.351779:1-374 [pilon] NODE_5670_length_565_cov_21.673423:1-565 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 201, Coverage: 23, minDepth: 6 [pilon] Confirmed 412 of 565 bases (72.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5670_length_565_cov_21.673423:1-565 [pilon] Processing NODE_87_length_3114_cov_17.936184:1-3114 [pilon] NODE_5531_length_575_cov_14.889868:1-575 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 158, Coverage: 30, minDepth: 8 [pilon] Confirmed 465 of 575 bases (80.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5531_length_575_cov_14.889868:1-575 [pilon] Processing NODE_6042_length_537_cov_8.750000:1-537 [pilon] NODE_7153_length_462_cov_24.741935:1-462 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 187, Coverage: 23, minDepth: 6 [pilon] Confirmed 312 of 462 bases (67.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7153_length_462_cov_24.741935:1-462 [pilon] Processing NODE_12595_length_243_cov_27.639344:1-243 [pilon] NODE_1860_length_1126_cov_3.175124:1-1126 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 89, Coverage: 10, minDepth: 5 [pilon] Confirmed 862 of 1126 bases (76.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1860_length_1126_cov_3.175124:1-1126 [pilon] Processing NODE_10118_length_321_cov_11.405000:1-321 [pilon] NODE_1363_length_1312_cov_15.183879:1-1312 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 460, Coverage: 31, minDepth: 8 [pilon] Confirmed 1072 of 1312 bases (81.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1363_length_1312_cov_15.183879:1-1312 [pilon] Processing NODE_13889_length_243_cov_15.000000:1-243 [pilon] NODE_10192_length_318_cov_9.685279:1-318 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 43, Coverage: 4, minDepth: 5 [pilon] Confirmed 179 of 318 bases (56.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10192_length_318_cov_9.685279:1-318 [pilon] Processing NODE_4737_length_640_cov_22.874759:1-640 [pilon] NODE_711_length_1695_cov_30.069886:1-1695 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 1127, Coverage: 71, minDepth: 18 [pilon] Confirmed 1307 of 1695 bases (77.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_711_length_1695_cov_30.069886:1-1695 [pilon] Processing NODE_12882_length_243_cov_24.221311:1-243 [pilon] NODE_3868_length_732_cov_11.490998:1-732 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 214, Coverage: 15, minDepth: 5 [pilon] Confirmed 644 of 732 bases (87.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3868_length_732_cov_11.490998:1-732 [pilon] Processing NODE_7147_length_462_cov_33.539589:1-462 [pilon] NODE_12000_length_246_cov_18.560000:1-246 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 52, Coverage: 6, minDepth: 5 [pilon] Confirmed 178 of 246 bases (72.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12000_length_246_cov_18.560000:1-246 [pilon] Processing NODE_10951_length_285_cov_34.969512:1-285 [pilon] NODE_3796_length_741_cov_14.112903:1-741 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 203, Coverage: 18, minDepth: 5 [pilon] Confirmed 681 of 741 bases (91.90%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3796_length_741_cov_14.112903:1-741 [pilon] Processing NODE_3905_length_726_cov_35.527273:1-726 [pilon] NODE_4978_length_620_cov_10.687375:1-620 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 148, Coverage: 22, minDepth: 6 [pilon] Confirmed 429 of 620 bases (69.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4978_length_620_cov_10.687375:1-620 [pilon] Processing NODE_4538_length_658_cov_2.189944:1-658 [pilon] NODE_3190_length_834_cov_3.001403:1-834 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 64, Coverage: 10, minDepth: 5 [pilon] Confirmed 583 of 834 bases (69.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3190_length_834_cov_3.001403:1-834 [pilon] Processing NODE_3401_length_798_cov_15.672083:1-798 [pilon] NODE_5435_length_582_cov_1.550976:1-582 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 276 of 582 bases (47.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5435_length_582_cov_1.550976:1-582 [pilon] Processing NODE_12317_length_243_cov_32.844262:1-243 [pilon] NODE_5507_length_576_cov_38.015385:1-576 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 410, Coverage: 71, minDepth: 18 [pilon] Confirmed 501 of 576 bases (86.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5507_length_576_cov_38.015385:1-576 [pilon] Processing NODE_4062_length_709_cov_20.896259:1-709 [pilon] NODE_4194_length_694_cov_18.696335:1-694 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 274, Coverage: 34, minDepth: 9 [pilon] Confirmed 485 of 694 bases (69.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4194_length_694_cov_18.696335:1-694 [pilon] Processing NODE_14652_length_243_cov_9.000000:1-243 [pilon] NODE_7594_length_438_cov_8.921136:1-438 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 67, Coverage: 6, minDepth: 5 [pilon] Confirmed 207 of 438 bases (47.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7594_length_438_cov_8.921136:1-438 [pilon] Processing NODE_2597_length_946_cov_1.116364:1-946 [pilon] NODE_4602_length_653_cov_1.101504:1-653 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 281 of 653 bases (43.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4602_length_653_cov_1.101504:1-653 [pilon] Processing NODE_7664_length_434_cov_57.900958:1-434 [pilon] NODE_2092_length_1061_cov_22.100000:1-1061 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 579, Coverage: 59, minDepth: 15 [pilon] Confirmed 634 of 1061 bases (59.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2092_length_1061_cov_22.100000:1-1061 [pilon] Processing NODE_7023_length_470_cov_18.174785:1-470 [pilon] NODE_13666_length_243_cov_16.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13666_length_243_cov_16.819672:1-243 [pilon] Processing NODE_14658_length_243_cov_8.967213:1-243 [pilon] NODE_7500_length_443_cov_15.754658:1-443 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 78, Coverage: 5, minDepth: 5 [pilon] Confirmed 165 of 443 bases (37.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7500_length_443_cov_15.754658:1-443 [pilon] Processing NODE_14583_length_243_cov_9.573770:1-243 [pilon] NODE_930_length_1541_cov_16.499296:1-1541 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 585, Coverage: 42, minDepth: 11 [pilon] Confirmed 1003 of 1541 bases (65.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_930_length_1541_cov_16.499296:1-1541 [pilon] Processing NODE_14406_length_243_cov_11.032787:1-243 [pilon] NODE_4660_length_647_cov_20.374525:1-647 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 305, Coverage: 34, minDepth: 9 [pilon] Confirmed 554 of 647 bases (85.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4660_length_647_cov_20.374525:1-647 [pilon] Processing NODE_5056_length_614_cov_20.421907:1-614 [pilon] NODE_1360_length_1313_cov_15.760067:1-1313 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 413, Coverage: 29, minDepth: 7 [pilon] Confirmed 974 of 1313 bases (74.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1360_length_1313_cov_15.760067:1-1313 [pilon] Processing NODE_12349_length_243_cov_32.081967:1-243 [pilon] NODE_10769_length_294_cov_24.843931:1-294 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 94, Coverage: 10, minDepth: 5 [pilon] Confirmed 198 of 294 bases (67.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10769_length_294_cov_24.843931:1-294 [pilon] Processing NODE_13095_length_243_cov_22.016393:1-243 [pilon] NODE_520_length_1898_cov_15.275183:1-1898 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 648, Coverage: 34, minDepth: 9 [pilon] Confirmed 1735 of 1898 bases (91.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_520_length_1898_cov_15.275183:1-1898 [pilon] Processing NODE_1009_length_1490_cov_3.824690:1-1490 [pilon] NODE_581_length_1828_cov_22.224370:1-1828 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 756, Coverage: 31, minDepth: 8 [pilon] Confirmed 1263 of 1828 bases (69.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_581_length_1828_cov_22.224370:1-1828 [pilon] Processing NODE_12443_length_243_cov_30.081967:1-243 [pilon] NODE_12882_length_243_cov_24.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12882_length_243_cov_24.221311:1-243 [pilon] Processing NODE_1555_length_1238_cov_33.483438:1-1238 [pilon] NODE_10688_length_298_cov_23.615819:1-298 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 87, Coverage: 10, minDepth: 5 [pilon] Confirmed 195 of 298 bases (65.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10688_length_298_cov_23.615819:1-298 [pilon] Processing NODE_2639_length_940_cov_3.100122:1-940 [pilon] NODE_7457_length_445_cov_47.317901:1-445 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 337, Coverage: 53, minDepth: 13 [pilon] Confirmed 374 of 445 bases (84.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7457_length_445_cov_47.317901:1-445 [pilon] Processing NODE_13395_length_243_cov_19.344262:1-243 [pilon] NODE_12595_length_243_cov_27.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12595_length_243_cov_27.639344:1-243 [pilon] Processing NODE_12875_length_243_cov_24.254098:1-243 [pilon] NODE_8854_length_374_cov_24.351779:1-374 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 146, Coverage: 33, minDepth: 8 [pilon] Confirmed 336 of 374 bases (89.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8854_length_374_cov_24.351779:1-374 [pilon] Processing NODE_10431_length_307_cov_13.005376:1-307 [pilon] NODE_6042_length_537_cov_8.750000:1-537 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 90, Coverage: 6, minDepth: 5 [pilon] Confirmed 294 of 537 bases (54.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6042_length_537_cov_8.750000:1-537 [pilon] NODE_10118_length_321_cov_11.405000:1-321 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 36, Coverage: 2, minDepth: 5 [pilon] Confirmed 100 of 321 bases (31.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10118_length_321_cov_11.405000:1-321 [pilon] Processing NODE_9427_length_348_cov_49.603524:1-348 [pilon] Processing NODE_9144_length_360_cov_13.581590:1-360 [pilon] NODE_4538_length_658_cov_2.189944:1-658 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 33, Coverage: 6, minDepth: 5 [pilon] Confirmed 323 of 658 bases (49.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4538_length_658_cov_2.189944:1-658 [pilon] Processing NODE_5573_length_573_cov_0.971239:1-573 [pilon] NODE_13889_length_243_cov_15.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13889_length_243_cov_15.000000:1-243 [pilon] Processing NODE_11499_length_264_cov_7.328671:1-264 [pilon] NODE_87_length_3114_cov_17.936184:1-3114 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 1370, Coverage: 46, minDepth: 12 [pilon] Confirmed 2676 of 3114 bases (85.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_87_length_3114_cov_17.936184:1-3114 [pilon] Processing NODE_6886_length_478_cov_29.383754:1-478 [pilon] NODE_10951_length_285_cov_34.969512:1-285 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 125, Coverage: 7, minDepth: 5 [pilon] Confirmed 202 of 285 bases (70.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10951_length_285_cov_34.969512:1-285 [pilon] Processing NODE_9381_length_351_cov_15.634783:1-351 [pilon] NODE_7147_length_462_cov_33.539589:1-462 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 248, Coverage: 42, minDepth: 11 [pilon] Confirmed 376 of 462 bases (81.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7147_length_462_cov_33.539589:1-462 [pilon] Processing NODE_9417_length_349_cov_29.315789:1-349 [pilon] NODE_4737_length_640_cov_22.874759:1-640 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 303, Coverage: 25, minDepth: 6 [pilon] Confirmed 507 of 640 bases (79.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4737_length_640_cov_22.874759:1-640 [pilon] Processing NODE_13455_length_243_cov_18.786885:1-243 [pilon] NODE_3401_length_798_cov_15.672083:1-798 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 301, Coverage: 39, minDepth: 10 [pilon] Confirmed 508 of 798 bases (63.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3401_length_798_cov_15.672083:1-798 [pilon] Processing NODE_10448_length_306_cov_20.697297:1-306 [pilon] NODE_3905_length_726_cov_35.527273:1-726 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 511, Coverage: 61, minDepth: 15 [pilon] Confirmed 634 of 726 bases (87.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3905_length_726_cov_35.527273:1-726 [pilon] Processing NODE_6344_length_514_cov_10.101781:1-514 [pilon] NODE_4062_length_709_cov_20.896259:1-709 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 263, Coverage: 34, minDepth: 9 [pilon] Confirmed 632 of 709 bases (89.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4062_length_709_cov_20.896259:1-709 [pilon] Processing NODE_13058_length_243_cov_22.336066:1-243 [pilon] NODE_12317_length_243_cov_32.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 79, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12317_length_243_cov_32.844262:1-243 [pilon] Processing NODE_1998_length_1087_cov_8.768116:1-1087 [pilon] NODE_1009_length_1490_cov_3.824690:1-1490 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 157, Coverage: 14, minDepth: 5 [pilon] Confirmed 1312 of 1490 bases (88.05%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1009_length_1490_cov_3.824690:1-1490 [pilon] Processing NODE_1634_length_1205_cov_6.669742:1-1205 [pilon] NODE_1555_length_1238_cov_33.483438:1-1238 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 986, Coverage: 52, minDepth: 13 [pilon] Confirmed 1076 of 1238 bases (86.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1555_length_1238_cov_33.483438:1-1238 [pilon] Processing NODE_12148_length_243_cov_39.368852:1-243 [pilon] NODE_2597_length_946_cov_1.116364:1-946 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 468 of 946 bases (49.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2597_length_946_cov_1.116364:1-946 [pilon] Processing NODE_7604_length_437_cov_30.341772:1-437 [pilon] NODE_14658_length_243_cov_8.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14658_length_243_cov_8.967213:1-243 [pilon] Processing NODE_14603_length_243_cov_9.360656:1-243 [pilon] NODE_14583_length_243_cov_9.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14583_length_243_cov_9.573770:1-243 [pilon] Processing NODE_11190_length_276_cov_16.993548:1-276 [pilon] NODE_7664_length_434_cov_57.900958:1-434 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 394, Coverage: 70, minDepth: 18 [pilon] Confirmed 354 of 434 bases (81.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7664_length_434_cov_57.900958:1-434 [pilon] Processing NODE_6636_length_495_cov_1.810160:1-495 [pilon] NODE_5056_length_614_cov_20.421907:1-614 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 240, Coverage: 29, minDepth: 7 [pilon] Confirmed 537 of 614 bases (87.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5056_length_614_cov_20.421907:1-614 [pilon] Processing NODE_1716_length_1175_cov_18.527514:1-1175 [pilon] NODE_14652_length_243_cov_9.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14652_length_243_cov_9.000000:1-243 [pilon] Processing NODE_10676_length_299_cov_14.292135:1-299 [pilon] NODE_14406_length_243_cov_11.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14406_length_243_cov_11.032787:1-243 [pilon] Processing NODE_14171_length_243_cov_12.901639:1-243 [pilon] NODE_13095_length_243_cov_22.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13095_length_243_cov_22.016393:1-243 [pilon] Processing NODE_6373_length_512_cov_13.161125:1-512 [pilon] NODE_7023_length_470_cov_18.174785:1-470 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 146, Coverage: 23, minDepth: 6 [pilon] Confirmed 367 of 470 bases (78.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7023_length_470_cov_18.174785:1-470 [pilon] Processing NODE_6468_length_506_cov_1.007792:1-506 [pilon] NODE_5573_length_573_cov_0.971239:1-573 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 11, Coverage: 2, minDepth: 5 [pilon] Confirmed 77 of 573 bases (13.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5573_length_573_cov_0.971239:1-573 [pilon] Processing NODE_1480_length_1270_cov_24.885988:1-1270 [pilon] NODE_12349_length_243_cov_32.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12349_length_243_cov_32.081967:1-243 [pilon] Processing NODE_6290_length_518_cov_34.984887:1-518 [pilon] NODE_12443_length_243_cov_30.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12443_length_243_cov_30.081967:1-243 [pilon] Processing NODE_3059_length_861_cov_17.167568:1-861 [pilon] NODE_13395_length_243_cov_19.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13395_length_243_cov_19.344262:1-243 [pilon] Processing NODE_14522_length_243_cov_10.106557:1-243 [pilon] NODE_2639_length_940_cov_3.100122:1-940 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 64, Coverage: 9, minDepth: 5 [pilon] Confirmed 772 of 940 bases (82.13%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2639_length_940_cov_3.100122:1-940 [pilon] Processing NODE_2898_length_893_cov_10.915803:1-893 [pilon] NODE_9144_length_360_cov_13.581590:1-360 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 226 of 360 bases (62.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_10431_length_307_cov_13.005376:1-307 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 77, Coverage: 3, minDepth: 5 [pilon] Confirmed 70 of 307 bases (22.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9144_length_360_cov_13.581590:1-360 [pilon] Processing NODE_5131_length_607_cov_42.901235:1-607 [pilon] Finished processing NODE_10431_length_307_cov_13.005376:1-307 [pilon] Processing NODE_15214_length_152_cov_31.483871:1-152 [pilon] NODE_12875_length_243_cov_24.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12875_length_243_cov_24.254098:1-243 [pilon] Processing NODE_7898_length_423_cov_8.354305:1-423 [pilon] NODE_9427_length_348_cov_49.603524:1-348 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 246, Coverage: 46, minDepth: 12 [pilon] Confirmed 300 of 348 bases (86.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9427_length_348_cov_49.603524:1-348 [pilon] Processing NODE_1898_length_1113_cov_36.739919:1-1113 [pilon] NODE_11499_length_264_cov_7.328671:1-264 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11499_length_264_cov_7.328671:1-264 [pilon] Processing NODE_6450_length_507_cov_10.443005:1-507 [pilon] NODE_6886_length_478_cov_29.383754:1-478 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 224, Coverage: 33, minDepth: 8 [pilon] Confirmed 364 of 478 bases (76.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6886_length_478_cov_29.383754:1-478 [pilon] Processing NODE_782_length_1634_cov_21.113020:1-1634 [pilon] NODE_9381_length_351_cov_15.634783:1-351 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 54, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 351 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9381_length_351_cov_15.634783:1-351 [pilon] NODE_13455_length_243_cov_18.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13455_length_243_cov_18.786885:1-243 [pilon] Processing NODE_5044_length_615_cov_12.159919:1-615 [pilon] Processing NODE_7456_length_446_cov_0.723077:1-446 [pilon] NODE_9417_length_349_cov_29.315789:1-349 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 130, Coverage: 16, minDepth: 5 [pilon] Confirmed 230 of 349 bases (65.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9417_length_349_cov_29.315789:1-349 [pilon] Processing NODE_5562_length_573_cov_14.630531:1-573 [pilon] NODE_12148_length_243_cov_39.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 84, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12148_length_243_cov_39.368852:1-243 [pilon] Processing NODE_8807_length_377_cov_10.175781:1-377 [pilon] NODE_1634_length_1205_cov_6.669742:1-1205 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 207, Coverage: 13, minDepth: 5 [pilon] Confirmed 823 of 1205 bases (68.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1634_length_1205_cov_6.669742:1-1205 [pilon] Processing NODE_9283_length_354_cov_22.103004:1-354 [pilon] NODE_10448_length_306_cov_20.697297:1-306 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 69, Coverage: 5, minDepth: 5 [pilon] Confirmed 154 of 306 bases (50.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10448_length_306_cov_20.697297:1-306 [pilon] Processing NODE_1918_length_1107_cov_12.237323:1-1107 [pilon] NODE_6344_length_514_cov_10.101781:1-514 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 88, Coverage: 16, minDepth: 5 [pilon] Confirmed 433 of 514 bases (84.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6344_length_514_cov_10.101781:1-514 [pilon] Processing NODE_4051_length_710_cov_24.164686:1-710 [pilon] NODE_13058_length_243_cov_22.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13058_length_243_cov_22.336066:1-243 [pilon] Processing NODE_7075_length_466_cov_36.304348:1-466 [pilon] NODE_7604_length_437_cov_30.341772:1-437 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 212, Coverage: 38, minDepth: 10 [pilon] Confirmed 358 of 437 bases (81.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7604_length_437_cov_30.341772:1-437 [pilon] Processing NODE_1400_length_1297_cov_19.049320:1-1297 [pilon] NODE_1998_length_1087_cov_8.768116:1-1087 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 246, Coverage: 18, minDepth: 5 [pilon] Confirmed 982 of 1087 bases (90.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1998_length_1087_cov_8.768116:1-1087 [pilon] Processing NODE_12584_length_243_cov_27.696721:1-243 [pilon] NODE_1480_length_1270_cov_24.885988:1-1270 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 712, Coverage: 43, minDepth: 11 [pilon] Confirmed 994 of 1270 bases (78.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1480_length_1270_cov_24.885988:1-1270 [pilon] Processing NODE_6782_length_484_cov_15.449036:1-484 [pilon] NODE_14603_length_243_cov_9.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14603_length_243_cov_9.360656:1-243 [pilon] Processing NODE_11384_length_267_cov_37.890411:1-267 [pilon] NODE_14171_length_243_cov_12.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14171_length_243_cov_12.901639:1-243 [pilon] Processing NODE_7851_length_425_cov_3.700658:1-425 [pilon] NODE_6636_length_495_cov_1.810160:1-495 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 243 of 495 bases (49.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6636_length_495_cov_1.810160:1-495 [pilon] Processing NODE_5248_length_597_cov_1.884454:1-597 [pilon] NODE_11190_length_276_cov_16.993548:1-276 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 54, Coverage: 3, minDepth: 5 [pilon] Confirmed 86 of 276 bases (31.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11190_length_276_cov_16.993548:1-276 [pilon] Processing NODE_7165_length_461_cov_72.667647:1-461 [pilon] NODE_6468_length_506_cov_1.007792:1-506 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 237 of 506 bases (46.84%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6468_length_506_cov_1.007792:1-506 [pilon] Processing NODE_4263_length_686_cov_15.513274:1-686 [pilon] NODE_10676_length_299_cov_14.292135:1-299 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 62, Coverage: 5, minDepth: 5 [pilon] Confirmed 203 of 299 bases (67.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10676_length_299_cov_14.292135:1-299 [pilon] Processing NODE_5528_length_575_cov_16.035242:1-575 [pilon] NODE_1716_length_1175_cov_18.527514:1-1175 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 467, Coverage: 38, minDepth: 10 [pilon] Confirmed 1062 of 1175 bases (90.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1716_length_1175_cov_18.527514:1-1175 [pilon] Processing NODE_8952_length_369_cov_9.689516:1-369 [pilon] NODE_6373_length_512_cov_13.161125:1-512 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 100, Coverage: 11, minDepth: 5 [pilon] Confirmed 310 of 512 bases (60.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6373_length_512_cov_13.161125:1-512 [pilon] Processing NODE_10556_length_303_cov_9.434066:1-303 [pilon] NODE_14522_length_243_cov_10.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14522_length_243_cov_10.106557:1-243 [pilon] Processing NODE_7441_length_446_cov_23.843077:1-446 [pilon] NODE_7898_length_423_cov_8.354305:1-423 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 63, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 423 bases (30.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7898_length_423_cov_8.354305:1-423 [pilon] Processing NODE_9028_length_365_cov_19.450820:1-365 [pilon] NODE_6290_length_518_cov_34.984887:1-518 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 322, Coverage: 47, minDepth: 12 [pilon] Confirmed 437 of 518 bases (84.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6290_length_518_cov_34.984887:1-518 [pilon] Processing NODE_13062_length_243_cov_22.303279:1-243 [pilon] NODE_2898_length_893_cov_10.915803:1-893 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 222, Coverage: 25, minDepth: 6 [pilon] Confirmed 597 of 893 bases (66.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2898_length_893_cov_10.915803:1-893 [pilon] Processing NODE_15109_length_217_cov_3.739583:1-217 [pilon] NODE_3059_length_861_cov_17.167568:1-861 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 292, Coverage: 37, minDepth: 9 [pilon] Confirmed 697 of 861 bases (80.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3059_length_861_cov_17.167568:1-861 [pilon] Processing NODE_15_length_5382_cov_27.628208:1-5382 [pilon] NODE_5131_length_607_cov_42.901235:1-607 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 536, Coverage: 66, minDepth: 17 [pilon] Confirmed 426 of 607 bases (70.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5131_length_607_cov_42.901235:1-607 [pilon] Processing NODE_6637_length_495_cov_1.783422:1-495 [pilon] NODE_15214_length_152_cov_31.483871:1-152 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 152 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15214_length_152_cov_31.483871:1-152 [pilon] Processing NODE_6616_length_496_cov_28.882667:1-496 [pilon] NODE_1898_length_1113_cov_36.739919:1-1113 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 794, Coverage: 72, minDepth: 18 [pilon] Confirmed 1007 of 1113 bases (90.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1898_length_1113_cov_36.739919:1-1113 [pilon] Processing NODE_10594_length_301_cov_21.244444:1-301 [pilon] NODE_6450_length_507_cov_10.443005:1-507 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 96, Coverage: 2, minDepth: 5 [pilon] Confirmed 118 of 507 bases (23.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6450_length_507_cov_10.443005:1-507 [pilon] Processing NODE_3456_length_791_cov_4.355224:1-791 [pilon] NODE_7456_length_446_cov_0.723077:1-446 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 446 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7456_length_446_cov_0.723077:1-446 [pilon] Processing NODE_8118_length_412_cov_3.536082:1-412 [pilon] NODE_5044_length_615_cov_12.159919:1-615 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 144, Coverage: 13, minDepth: 5 [pilon] Confirmed 364 of 615 bases (59.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5044_length_615_cov_12.159919:1-615 [pilon] Processing NODE_12839_length_243_cov_24.688525:1-243 [pilon] NODE_782_length_1634_cov_21.113020:1-1634 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 728, Coverage: 49, minDepth: 12 [pilon] Confirmed 1304 of 1634 bases (79.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_782_length_1634_cov_21.113020:1-1634 [pilon] Processing NODE_12811_length_243_cov_24.909836:1-243 [pilon] NODE_8807_length_377_cov_10.175781:1-377 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 64, Coverage: 3, minDepth: 5 [pilon] Confirmed 122 of 377 bases (32.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8807_length_377_cov_10.175781:1-377 [pilon] Processing NODE_3016_length_870_cov_17.069426:1-870 [pilon] NODE_5562_length_573_cov_14.630531:1-573 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 147, Coverage: 25, minDepth: 6 [pilon] Confirmed 475 of 573 bases (82.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5562_length_573_cov_14.630531:1-573 [pilon] Processing NODE_13681_length_243_cov_16.647541:1-243 [pilon] NODE_9283_length_354_cov_22.103004:1-354 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 109, Coverage: 15, minDepth: 5 [pilon] Confirmed 258 of 354 bases (72.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9283_length_354_cov_22.103004:1-354 [pilon] Processing NODE_4224_length_691_cov_5.661404:1-691 [pilon] NODE_7075_length_466_cov_36.304348:1-466 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 281, Coverage: 44, minDepth: 11 [pilon] Confirmed 392 of 466 bases (84.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7075_length_466_cov_36.304348:1-466 [pilon] Processing NODE_10332_length_312_cov_15.481675:1-312 [pilon] NODE_6782_length_484_cov_15.449036:1-484 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 135, Coverage: 19, minDepth: 5 [pilon] Confirmed 347 of 484 bases (71.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6782_length_484_cov_15.449036:1-484 [pilon] Processing NODE_13641_length_243_cov_17.106557:1-243 [pilon] NODE_4051_length_710_cov_24.164686:1-710 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 353, Coverage: 37, minDepth: 9 [pilon] Confirmed 547 of 710 bases (77.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4051_length_710_cov_24.164686:1-710 [pilon] Processing NODE_9449_length_348_cov_14.762115:1-348 [pilon] NODE_1918_length_1107_cov_12.237323:1-1107 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 273, Coverage: 31, minDepth: 8 [pilon] Confirmed 646 of 1107 bases (58.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1918_length_1107_cov_12.237323:1-1107 [pilon] Processing NODE_5830_length_553_cov_15.078704:1-553 [pilon] NODE_10556_length_303_cov_9.434066:1-303 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 41, Coverage: 6, minDepth: 5 [pilon] Confirmed 188 of 303 bases (62.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10556_length_303_cov_9.434066:1-303 [pilon] Processing NODE_14536_length_243_cov_10.008197:1-243 [pilon] NODE_12584_length_243_cov_27.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12584_length_243_cov_27.696721:1-243 [pilon] Processing NODE_6164_length_527_cov_23.544335:1-527 [pilon] NODE_11384_length_267_cov_37.890411:1-267 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 116, Coverage: 11, minDepth: 5 [pilon] Confirmed 201 of 267 bases (75.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11384_length_267_cov_37.890411:1-267 [pilon] Processing NODE_12018_length_246_cov_13.240000:1-246 [pilon] NODE_1400_length_1297_cov_19.049320:1-1297 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 539, Coverage: 39, minDepth: 10 [pilon] Confirmed 1207 of 1297 bases (93.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1400_length_1297_cov_19.049320:1-1297 [pilon] Processing NODE_3304_length_815_cov_1.067723:1-815 [pilon] NODE_8952_length_369_cov_9.689516:1-369 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 52, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 369 bases (40.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8952_length_369_cov_9.689516:1-369 [pilon] Processing NODE_13869_length_243_cov_15.147541:1-243 [pilon] NODE_4263_length_686_cov_15.513274:1-686 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 218, Coverage: 34, minDepth: 9 [pilon] Confirmed 505 of 686 bases (73.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4263_length_686_cov_15.513274:1-686 [pilon] Processing NODE_13903_length_243_cov_14.868852:1-243 [pilon] NODE_5528_length_575_cov_16.035242:1-575 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 170, Coverage: 33, minDepth: 8 [pilon] Confirmed 447 of 575 bases (77.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5528_length_575_cov_16.035242:1-575 [pilon] Processing NODE_11217_length_275_cov_24.844156:1-275 [pilon] NODE_5248_length_597_cov_1.884454:1-597 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 25, Coverage: 5, minDepth: 5 [pilon] Confirmed 306 of 597 bases (51.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5248_length_597_cov_1.884454:1-597 [pilon] Processing NODE_5297_length_593_cov_1.680085:1-593 [pilon] NODE_7851_length_425_cov_3.700658:1-425 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 22, Coverage: 7, minDepth: 5 [pilon] Confirmed 268 of 425 bases (63.06%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7851_length_425_cov_3.700658:1-425 [pilon] Processing NODE_2497_length_968_cov_16.362456:1-968 [pilon] NODE_7165_length_461_cov_72.667647:1-461 log: [pilon] frags shovill.bam: coverage 100 [pilon] Total Reads: 529, Coverage: 100, minDepth: 25 [pilon] Confirmed 404 of 461 bases (87.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7165_length_461_cov_72.667647:1-461 [pilon] Processing NODE_29_length_4665_cov_18.992958:1-4665 [pilon] NODE_7441_length_446_cov_23.843077:1-446 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 204, Coverage: 10, minDepth: 5 [pilon] Confirmed 240 of 446 bases (53.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7441_length_446_cov_23.843077:1-446 [pilon] Processing NODE_7651_length_435_cov_16.799363:1-435 [pilon] NODE_12811_length_243_cov_24.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12811_length_243_cov_24.909836:1-243 [pilon] Processing NODE_1465_length_1276_cov_2.560173:1-1276 [pilon] NODE_9028_length_365_cov_19.450820:1-365 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 98, Coverage: 13, minDepth: 5 [pilon] Confirmed 241 of 365 bases (66.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9028_length_365_cov_19.450820:1-365 [pilon] Processing NODE_10256_length_315_cov_10.711340:1-315 [pilon] NODE_4224_length_691_cov_5.661404:1-691 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 94, Coverage: 10, minDepth: 5 [pilon] Confirmed 515 of 691 bases (74.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4224_length_691_cov_5.661404:1-691 [pilon] Processing NODE_1731_length_1169_cov_9.497137:1-1169 [pilon] NODE_15109_length_217_cov_3.739583:1-217 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 22, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 217 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15109_length_217_cov_3.739583:1-217 [pilon] Processing NODE_3064_length_860_cov_13.185386:1-860 [pilon] NODE_13062_length_243_cov_22.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13062_length_243_cov_22.303279:1-243 [pilon] Processing NODE_751_length_1668_cov_3.131222:1-1668 [pilon] NODE_10594_length_301_cov_21.244444:1-301 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 80, Coverage: 5, minDepth: 5 [pilon] Confirmed 157 of 301 bases (52.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10594_length_301_cov_21.244444:1-301 [pilon] Processing NODE_428_length_1996_cov_18.405867:1-1996 [pilon] NODE_6616_length_496_cov_28.882667:1-496 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 242, Coverage: 32, minDepth: 8 [pilon] Confirmed 413 of 496 bases (83.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6616_length_496_cov_28.882667:1-496 [pilon] Processing NODE_8259_length_406_cov_1.757895:1-406 [pilon] NODE_6637_length_495_cov_1.783422:1-495 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 230 of 495 bases (46.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6637_length_495_cov_1.783422:1-495 [pilon] Processing NODE_12259_length_243_cov_34.295082:1-243 [pilon] NODE_3456_length_791_cov_4.355224:1-791 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 68, Coverage: 11, minDepth: 5 [pilon] Confirmed 493 of 791 bases (62.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3456_length_791_cov_4.355224:1-791 [pilon] Processing NODE_5152_length_606_cov_2.158763:1-606 [pilon] NODE_12839_length_243_cov_24.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12839_length_243_cov_24.688525:1-243 [pilon] Processing NODE_2402_length_990_cov_20.116226:1-990 [pilon] NODE_8118_length_412_cov_3.536082:1-412 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 25, Coverage: 6, minDepth: 5 [pilon] Confirmed 252 of 412 bases (61.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8118_length_412_cov_3.536082:1-412 [pilon] Processing NODE_705_length_1701_cov_19.932911:1-1701 [pilon] NODE_10332_length_312_cov_15.481675:1-312 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 69, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 312 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10332_length_312_cov_15.481675:1-312 [pilon] Processing NODE_14955_length_243_cov_6.081967:1-243 [pilon] NODE_3016_length_870_cov_17.069426:1-870 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 334, Coverage: 39, minDepth: 10 [pilon] Confirmed 732 of 870 bases (84.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3016_length_870_cov_17.069426:1-870 [pilon] Processing NODE_1959_length_1096_cov_1.543590:1-1096 [pilon] NODE_13681_length_243_cov_16.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13681_length_243_cov_16.647541:1-243 [pilon] Processing NODE_3818_length_738_cov_26.701783:1-738 [pilon] NODE_11217_length_275_cov_24.844156:1-275 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 211 of 275 bases (76.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11217_length_275_cov_24.844156:1-275 [pilon] Processing NODE_13746_length_243_cov_16.090164:1-243 [pilon] NODE_15_length_5382_cov_27.628208:1-5382 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 3460, Coverage: 63, minDepth: 16 [pilon] Confirmed 5120 of 5382 bases (95.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15_length_5382_cov_27.628208:1-5382 [pilon] Processing NODE_7008_length_471_cov_1.740000:1-471 [pilon] NODE_13641_length_243_cov_17.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13641_length_243_cov_17.106557:1-243 [pilon] Processing NODE_161_length_2685_cov_25.488690:1-2685 [pilon] NODE_9449_length_348_cov_14.762115:1-348 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 74, Coverage: 10, minDepth: 5 [pilon] Confirmed 257 of 348 bases (73.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9449_length_348_cov_14.762115:1-348 [pilon] Processing NODE_7258_length_456_cov_48.698507:1-456 [pilon] NODE_14536_length_243_cov_10.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14536_length_243_cov_10.008197:1-243 [pilon] Processing NODE_10074_length_322_cov_15.582090:1-322 [pilon] NODE_5830_length_553_cov_15.078704:1-553 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 152, Coverage: 18, minDepth: 5 [pilon] Confirmed 392 of 553 bases (70.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5830_length_553_cov_15.078704:1-553 [pilon] Processing NODE_12790_length_243_cov_25.098361:1-243 [pilon] NODE_12018_length_246_cov_13.240000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 42, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12018_length_246_cov_13.240000:1-246 [pilon] Processing NODE_5478_length_579_cov_8.172489:1-579 [pilon] NODE_13869_length_243_cov_15.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13869_length_243_cov_15.147541:1-243 [pilon] Processing NODE_7857_length_425_cov_0.713816:1-425 [pilon] NODE_6164_length_527_cov_23.544335:1-527 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 225, Coverage: 24, minDepth: 6 [pilon] Confirmed 325 of 527 bases (61.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6164_length_527_cov_23.544335:1-527 [pilon] Processing NODE_10750_length_295_cov_22.327586:1-295 [pilon] NODE_3304_length_815_cov_1.067723:1-815 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 28, Coverage: 4, minDepth: 5 [pilon] Confirmed 351 of 815 bases (43.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3304_length_815_cov_1.067723:1-815 [pilon] Processing NODE_10960_length_285_cov_23.932927:1-285 [pilon] NODE_5297_length_593_cov_1.680085:1-593 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 280 of 593 bases (47.22%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5297_length_593_cov_1.680085:1-593 [pilon] Processing NODE_797_length_1627_cov_42.405710:1-1627 [pilon] NODE_13903_length_243_cov_14.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13903_length_243_cov_14.868852:1-243 [pilon] Processing NODE_6664_length_493_cov_0.873656:1-493 [pilon] NODE_7651_length_435_cov_16.799363:1-435 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 121, Coverage: 19, minDepth: 5 [pilon] Confirmed 325 of 435 bases (74.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7651_length_435_cov_16.799363:1-435 [pilon] Processing NODE_6254_length_521_cov_0.692500:1-521 [pilon] NODE_1731_length_1169_cov_9.497137:1-1169 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 252, Coverage: 22, minDepth: 6 [pilon] Confirmed 956 of 1169 bases (81.78%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1731_length_1169_cov_9.497137:1-1169 [pilon] Processing NODE_5639_length_568_cov_1.055928:1-568 [pilon] NODE_2497_length_968_cov_16.362456:1-968 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 348, Coverage: 31, minDepth: 8 [pilon] Confirmed 846 of 968 bases (87.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2497_length_968_cov_16.362456:1-968 [pilon] Processing NODE_1353_length_1317_cov_38.780936:1-1317 [pilon] NODE_10256_length_315_cov_10.711340:1-315 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 55, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 315 bases (41.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10256_length_315_cov_10.711340:1-315 [pilon] Processing NODE_14927_length_243_cov_6.426230:1-243 [pilon] NODE_1465_length_1276_cov_2.560173:1-1276 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 90, Coverage: 9, minDepth: 5 [pilon] Confirmed 1158 of 1276 bases (90.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1465_length_1276_cov_2.560173:1-1276 [pilon] Processing NODE_845_length_1601_cov_2.407432:1-1601 [pilon] NODE_3064_length_860_cov_13.185386:1-860 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 252, Coverage: 20, minDepth: 5 [pilon] Confirmed 561 of 860 bases (65.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3064_length_860_cov_13.185386:1-860 [pilon] Processing NODE_1570_length_1230_cov_29.341749:1-1230 [pilon] NODE_8259_length_406_cov_1.757895:1-406 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 5 of 406 bases (1.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8259_length_406_cov_1.757895:1-406 [pilon] Processing NODE_12439_length_243_cov_30.196721:1-243 [pilon] NODE_12259_length_243_cov_34.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12259_length_243_cov_34.295082:1-243 [pilon] Processing NODE_12793_length_243_cov_25.065574:1-243 [pilon] NODE_29_length_4665_cov_18.992958:1-4665 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1961, Coverage: 54, minDepth: 14 [pilon] Confirmed 3828 of 4665 bases (82.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_29_length_4665_cov_18.992958:1-4665 [pilon] Processing NODE_13684_length_243_cov_16.590164:1-243 [pilon] NODE_5152_length_606_cov_2.158763:1-606 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 35, Coverage: 8, minDepth: 5 [pilon] Confirmed 452 of 606 bases (74.59%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5152_length_606_cov_2.158763:1-606 [pilon] Processing NODE_41_length_3942_cov_21.728605:1-3942 [pilon] NODE_14955_length_243_cov_6.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14955_length_243_cov_6.081967:1-243 [pilon] Processing NODE_396_length_2055_cov_2.105481:1-2055 [pilon] NODE_751_length_1668_cov_3.131222:1-1668 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 122, Coverage: 9, minDepth: 5 [pilon] Confirmed 1274 of 1668 bases (76.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_751_length_1668_cov_3.131222:1-1668 [pilon] Processing NODE_2241_length_1022_cov_17.386238:1-1022 [pilon] NODE_428_length_1996_cov_18.405867:1-1996 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 830, Coverage: 35, minDepth: 9 [pilon] Confirmed 1884 of 1996 bases (94.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_428_length_1996_cov_18.405867:1-1996 [pilon] Processing NODE_10670_length_299_cov_18.151685:1-299 [pilon] NODE_1959_length_1096_cov_1.543590:1-1096 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 52, Coverage: 6, minDepth: 5 [pilon] Confirmed 517 of 1096 bases (47.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1959_length_1096_cov_1.543590:1-1096 [pilon] Processing NODE_13428_length_243_cov_19.024590:1-243 [pilon] NODE_2402_length_990_cov_20.116226:1-990 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 407, Coverage: 26, minDepth: 7 [pilon] Confirmed 832 of 990 bases (84.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2402_length_990_cov_20.116226:1-990 [pilon] Processing NODE_1068_length_1456_cov_22.659176:1-1456 [pilon] NODE_13746_length_243_cov_16.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13746_length_243_cov_16.090164:1-243 [pilon] Processing NODE_148_length_2730_cov_10.183595:1-2730 [pilon] NODE_3818_length_738_cov_26.701783:1-738 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 391, Coverage: 45, minDepth: 11 [pilon] Confirmed 606 of 738 bases (82.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3818_length_738_cov_26.701783:1-738 [pilon] Processing NODE_110_length_2932_cov_16.357168:1-2932 [pilon] NODE_7008_length_471_cov_1.740000:1-471 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 269 of 471 bases (57.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7008_length_471_cov_1.740000:1-471 [pilon] Processing NODE_7096_length_465_cov_19.229651:1-465 [pilon] NODE_705_length_1701_cov_19.932911:1-1701 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 762, Coverage: 41, minDepth: 10 [pilon] Confirmed 1433 of 1701 bases (84.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_705_length_1701_cov_19.932911:1-1701 [pilon] Processing NODE_11999_length_246_cov_18.776000:1-246 [pilon] NODE_5639_length_568_cov_1.055928:1-568 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 264 of 568 bases (46.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5639_length_568_cov_1.055928:1-568 [pilon] Processing NODE_7504_length_443_cov_2.201863:1-443 [pilon] NODE_10074_length_322_cov_15.582090:1-322 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 51, Coverage: 3, minDepth: 5 [pilon] Confirmed 105 of 322 bases (32.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10074_length_322_cov_15.582090:1-322 [pilon] Processing NODE_15154_length_188_cov_1.000000:1-188 [pilon] NODE_12790_length_243_cov_25.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12790_length_243_cov_25.098361:1-243 [pilon] Processing NODE_674_length_1725_cov_17.681421:1-1725 [pilon] NODE_7258_length_456_cov_48.698507:1-456 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 380, Coverage: 59, minDepth: 15 [pilon] Confirmed 412 of 456 bases (90.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7258_length_456_cov_48.698507:1-456 [pilon] Processing NODE_7764_length_429_cov_14.961039:1-429 [pilon] NODE_5478_length_579_cov_8.172489:1-579 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 72, Coverage: 8, minDepth: 5 [pilon] Confirmed 357 of 579 bases (61.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5478_length_579_cov_8.172489:1-579 [pilon] Processing NODE_5428_length_582_cov_16.700651:1-582 [pilon] NODE_10750_length_295_cov_22.327586:1-295 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 69, Coverage: 3, minDepth: 5 [pilon] Confirmed 81 of 295 bases (27.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10750_length_295_cov_22.327586:1-295 [pilon] Processing NODE_10478_length_306_cov_8.178378:1-306 [pilon] NODE_7857_length_425_cov_0.713816:1-425 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 61 of 425 bases (14.35%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7857_length_425_cov_0.713816:1-425 [pilon] Processing NODE_12791_length_243_cov_25.073770:1-243 [pilon] NODE_10960_length_285_cov_23.932927:1-285 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 87, Coverage: 11, minDepth: 5 [pilon] Confirmed 241 of 285 bases (84.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10960_length_285_cov_23.932927:1-285 [pilon] Processing NODE_6448_length_507_cov_14.417098:1-507 [pilon] NODE_161_length_2685_cov_25.488690:1-2685 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 1588, Coverage: 57, minDepth: 14 [pilon] Confirmed 2421 of 2685 bases (90.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_161_length_2685_cov_25.488690:1-2685 [pilon] Processing NODE_4114_length_704_cov_1.699828:1-704 [pilon] NODE_6664_length_493_cov_0.873656:1-493 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 493 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6664_length_493_cov_0.873656:1-493 [pilon] Processing NODE_8508_length_393_cov_24.272059:1-393 [pilon] NODE_6254_length_521_cov_0.692500:1-521 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 521 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6254_length_521_cov_0.692500:1-521 [pilon] Processing NODE_5682_length_564_cov_19.984199:1-564 [pilon] NODE_1353_length_1317_cov_38.780936:1-1317 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 1116, Coverage: 62, minDepth: 16 [pilon] Confirmed 1150 of 1317 bases (87.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1353_length_1317_cov_38.780936:1-1317 [pilon] Processing NODE_12251_length_243_cov_34.614754:1-243 [pilon] NODE_797_length_1627_cov_42.405710:1-1627 log: [pilon] frags shovill.bam: coverage 115 [pilon] Total Reads: 1581, Coverage: 115, minDepth: 29 [pilon] Confirmed 1470 of 1627 bases (90.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_797_length_1627_cov_42.405710:1-1627 [pilon] Processing NODE_3749_length_747_cov_19.399361:1-747 [pilon] NODE_12439_length_243_cov_30.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12439_length_243_cov_30.196721:1-243 [pilon] Processing NODE_12153_length_243_cov_39.139344:1-243 [pilon] NODE_845_length_1601_cov_2.407432:1-1601 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 85, Coverage: 7, minDepth: 5 [pilon] Confirmed 987 of 1601 bases (61.65%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_845_length_1601_cov_2.407432:1-1601 [pilon] Processing NODE_12483_length_243_cov_29.377049:1-243 [pilon] NODE_13428_length_243_cov_19.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13428_length_243_cov_19.024590:1-243 [pilon] Processing NODE_10396_length_309_cov_15.819149:1-309 [pilon] NODE_14927_length_243_cov_6.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14927_length_243_cov_6.426230:1-243 [pilon] Processing NODE_480_length_1930_cov_29.556108:1-1930 [pilon] NODE_12793_length_243_cov_25.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12793_length_243_cov_25.065574:1-243 [pilon] Processing NODE_13179_length_243_cov_21.295082:1-243 [pilon] NODE_13684_length_243_cov_16.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13684_length_243_cov_16.590164:1-243 [pilon] Processing NODE_4846_length_631_cov_3.401961:1-631 [pilon] NODE_396_length_2055_cov_2.105481:1-2055 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 115, Coverage: 7, minDepth: 5 [pilon] Confirmed 1082 of 2055 bases (52.65%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_396_length_2055_cov_2.105481:1-2055 [pilon] Processing NODE_5939_length_545_cov_16.377358:1-545 [pilon] NODE_1570_length_1230_cov_29.341749:1-1230 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 768, Coverage: 67, minDepth: 17 [pilon] Confirmed 1120 of 1230 bases (91.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1570_length_1230_cov_29.341749:1-1230 [pilon] Processing NODE_735_length_1675_cov_2.857786:1-1675 [pilon] NODE_7504_length_443_cov_2.201863:1-443 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 26, Coverage: 3, minDepth: 5 [pilon] Confirmed 96 of 443 bases (21.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7504_length_443_cov_2.201863:1-443 [pilon] Processing NODE_7159_length_462_cov_10.976540:1-462 [pilon] NODE_10670_length_299_cov_18.151685:1-299 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 75, Coverage: 9, minDepth: 5 [pilon] Confirmed 260 of 299 bases (86.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10670_length_299_cov_18.151685:1-299 [pilon] Processing NODE_7551_length_441_cov_8.859375:1-441 [pilon] NODE_1068_length_1456_cov_22.659176:1-1456 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 694, Coverage: 58, minDepth: 15 [pilon] Confirmed 804 of 1456 bases (55.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1068_length_1456_cov_22.659176:1-1456 [pilon] Processing NODE_1879_length_1120_cov_0.882883:1-1120 [pilon] NODE_7096_length_465_cov_19.229651:1-465 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 138, Coverage: 22, minDepth: 6 [pilon] Confirmed 362 of 465 bases (77.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7096_length_465_cov_19.229651:1-465 [pilon] NODE_2241_length_1022_cov_17.386238:1-1022 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 421, Coverage: 32, minDepth: 8 [pilon] Confirmed 971 of 1022 bases (95.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2241_length_1022_cov_17.386238:1-1022 [pilon] Processing NODE_11145_length_278_cov_14.592357:1-278 [pilon] Processing NODE_7334_length_451_cov_43.930303:1-451 [pilon] NODE_41_length_3942_cov_21.728605:1-3942 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 2038, Coverage: 49, minDepth: 12 [pilon] Confirmed 3285 of 3942 bases (83.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_41_length_3942_cov_21.728605:1-3942 [pilon] Processing NODE_8602_length_388_cov_16.692884:1-388 [pilon] NODE_15154_length_188_cov_1.000000:1-188 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 188 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15154_length_188_cov_1.000000:1-188 [pilon] Processing NODE_11504_length_264_cov_5.972028:1-264 [pilon] NODE_11999_length_246_cov_18.776000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 51, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11999_length_246_cov_18.776000:1-246 [pilon] Processing NODE_12264_length_243_cov_34.196721:1-243 [pilon] NODE_5682_length_564_cov_19.984199:1-564 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 211, Coverage: 28, minDepth: 7 [pilon] Confirmed 373 of 564 bases (66.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5682_length_564_cov_19.984199:1-564 [pilon] Processing NODE_11545_length_262_cov_17.879433:1-262 [pilon] NODE_5428_length_582_cov_16.700651:1-582 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 187, Coverage: 31, minDepth: 8 [pilon] Confirmed 486 of 582 bases (83.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5428_length_582_cov_16.700651:1-582 [pilon] Processing NODE_7086_length_465_cov_47.180233:1-465 [pilon] NODE_148_length_2730_cov_10.183595:1-2730 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 606, Coverage: 29, minDepth: 7 [pilon] Confirmed 2387 of 2730 bases (87.44%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_148_length_2730_cov_10.183595:1-2730 [pilon] Processing NODE_3668_length_759_cov_20.457680:1-759 [pilon] NODE_7764_length_429_cov_14.961039:1-429 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 111, Coverage: 11, minDepth: 5 [pilon] Confirmed 302 of 429 bases (70.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7764_length_429_cov_14.961039:1-429 [pilon] Processing NODE_3893_length_729_cov_2.692434:1-729 [pilon] NODE_110_length_2932_cov_16.357168:1-2932 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 1051, Coverage: 43, minDepth: 11 [pilon] Confirmed 2562 of 2932 bases (87.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_110_length_2932_cov_16.357168:1-2932 [pilon] Processing NODE_5812_length_554_cov_27.085450:1-554 [pilon] NODE_10478_length_306_cov_8.178378:1-306 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 26, Coverage: 3, minDepth: 5 [pilon] Confirmed 120 of 306 bases (39.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10478_length_306_cov_8.178378:1-306 [pilon] NODE_12791_length_243_cov_25.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12791_length_243_cov_25.073770:1-243 [pilon] Processing NODE_12449_length_243_cov_29.959016:1-243 [pilon] Processing NODE_6238_length_522_cov_7.872818:1-522 [pilon] NODE_674_length_1725_cov_17.681421:1-1725 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 691, Coverage: 29, minDepth: 7 [pilon] Confirmed 1432 of 1725 bases (83.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_674_length_1725_cov_17.681421:1-1725 [pilon] Processing NODE_14465_length_243_cov_10.540984:1-243 [pilon] NODE_6448_length_507_cov_14.417098:1-507 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 124, Coverage: 4, minDepth: 5 [pilon] Confirmed 164 of 507 bases (32.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6448_length_507_cov_14.417098:1-507 [pilon] Processing NODE_7667_length_434_cov_29.150160:1-434 [pilon] NODE_4114_length_704_cov_1.699828:1-704 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 444 of 704 bases (63.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4114_length_704_cov_1.699828:1-704 [pilon] Processing NODE_6529_length_501_cov_22.192105:1-501 [pilon] NODE_8508_length_393_cov_24.272059:1-393 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 153, Coverage: 21, minDepth: 5 [pilon] Confirmed 279 of 393 bases (70.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8508_length_393_cov_24.272059:1-393 [pilon] Processing NODE_13254_length_243_cov_20.581967:1-243 [pilon] NODE_10396_length_309_cov_15.819149:1-309 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 72, Coverage: 8, minDepth: 5 [pilon] Confirmed 183 of 309 bases (59.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10396_length_309_cov_15.819149:1-309 [pilon] Processing NODE_208_length_2473_cov_14.991922:1-2473 [pilon] NODE_12251_length_243_cov_34.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12251_length_243_cov_34.614754:1-243 [pilon] Processing NODE_14015_length_243_cov_14.090164:1-243 [pilon] NODE_7159_length_462_cov_10.976540:1-462 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 85, Coverage: 7, minDepth: 5 [pilon] Confirmed 233 of 462 bases (50.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7159_length_462_cov_10.976540:1-462 [pilon] Processing NODE_4350_length_676_cov_2.758559:1-676 [pilon] NODE_3749_length_747_cov_19.399361:1-747 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 290, Coverage: 37, minDepth: 9 [pilon] Confirmed 577 of 747 bases (77.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3749_length_747_cov_19.399361:1-747 [pilon] Processing NODE_11114_length_279_cov_17.594937:1-279 [pilon] NODE_12153_length_243_cov_39.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 103, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12153_length_243_cov_39.139344:1-243 [pilon] Processing NODE_775_length_1642_cov_1.388560:1-1642 [pilon] NODE_12483_length_243_cov_29.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12483_length_243_cov_29.377049:1-243 [pilon] Processing NODE_7842_length_425_cov_14.671053:1-425 [pilon] NODE_13179_length_243_cov_21.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13179_length_243_cov_21.295082:1-243 [pilon] Processing NODE_14736_length_243_cov_8.245902:1-243 [pilon] NODE_11545_length_262_cov_17.879433:1-262 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 71, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 262 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11545_length_262_cov_17.879433:1-262 [pilon] Processing NODE_14964_length_243_cov_5.942623:1-243 [pilon] NODE_4846_length_631_cov_3.401961:1-631 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 43, Coverage: 8, minDepth: 5 [pilon] Confirmed 399 of 631 bases (63.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4846_length_631_cov_3.401961:1-631 [pilon] Processing NODE_8955_length_369_cov_7.016129:1-369 [pilon] NODE_480_length_1930_cov_29.556108:1-1930 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 1306, Coverage: 47, minDepth: 12 [pilon] Confirmed 1560 of 1930 bases (80.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_480_length_1930_cov_29.556108:1-1930 [pilon] Processing NODE_3178_length_835_cov_15.756303:1-835 [pilon] NODE_7551_length_441_cov_8.859375:1-441 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 56, Coverage: 8, minDepth: 5 [pilon] Confirmed 260 of 441 bases (58.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7551_length_441_cov_8.859375:1-441 [pilon] Processing NODE_4751_length_639_cov_18.795367:1-639 [pilon] NODE_5939_length_545_cov_16.377358:1-545 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 177, Coverage: 30, minDepth: 8 [pilon] Confirmed 452 of 545 bases (82.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5939_length_545_cov_16.377358:1-545 [pilon] Processing NODE_12368_length_243_cov_31.721311:1-243 [pilon] NODE_735_length_1675_cov_2.857786:1-1675 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 134, Coverage: 10, minDepth: 5 [pilon] Confirmed 1473 of 1675 bases (87.94%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_735_length_1675_cov_2.857786:1-1675 [pilon] Processing NODE_5113_length_609_cov_2.413934:1-609 [pilon] NODE_11145_length_278_cov_14.592357:1-278 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 55, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 278 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11145_length_278_cov_14.592357:1-278 [pilon] Processing NODE_11194_length_276_cov_15.406452:1-276 [pilon] NODE_1879_length_1120_cov_0.882883:1-1120 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 43, Coverage: 5, minDepth: 5 [pilon] Confirmed 515 of 1120 bases (45.98%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1879_length_1120_cov_0.882883:1-1120 [pilon] Processing NODE_1092_length_1444_cov_35.136054:1-1444 [pilon] NODE_208_length_2473_cov_14.991922:1-2473 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1087, Coverage: 54, minDepth: 14 [pilon] Confirmed 2244 of 2473 bases (90.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_208_length_2473_cov_14.991922:1-2473 [pilon] Processing NODE_2025_length_1080_cov_16.340980:1-1080 [pilon] NODE_12264_length_243_cov_34.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12264_length_243_cov_34.196721:1-243 [pilon] Processing NODE_4454_length_665_cov_56.542279:1-665 [pilon] NODE_4350_length_676_cov_2.758559:1-676 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 43, Coverage: 8, minDepth: 5 [pilon] Confirmed 519 of 676 bases (76.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4350_length_676_cov_2.758559:1-676 [pilon] Processing NODE_10777_length_294_cov_17.520231:1-294 [pilon] NODE_7334_length_451_cov_43.930303:1-451 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 334, Coverage: 52, minDepth: 13 [pilon] Confirmed 409 of 451 bases (90.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7334_length_451_cov_43.930303:1-451 [pilon] Processing NODE_12649_length_243_cov_26.877049:1-243 [pilon] NODE_8602_length_388_cov_16.692884:1-388 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 109, Coverage: 14, minDepth: 5 [pilon] Confirmed 307 of 388 bases (79.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8602_length_388_cov_16.692884:1-388 [pilon] Processing NODE_14443_length_243_cov_10.721311:1-243 [pilon] NODE_11504_length_264_cov_5.972028:1-264 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11504_length_264_cov_5.972028:1-264 [pilon] Processing NODE_5285_length_594_cov_2.566596:1-594 [pilon] NODE_7086_length_465_cov_47.180233:1-465 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 354, Coverage: 65, minDepth: 16 [pilon] Confirmed 380 of 465 bases (81.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7086_length_465_cov_47.180233:1-465 [pilon] Processing NODE_8345_length_402_cov_47.604982:1-402 [pilon] NODE_12449_length_243_cov_29.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12449_length_243_cov_29.959016:1-243 [pilon] Processing NODE_7498_length_443_cov_16.804348:1-443 [pilon] NODE_3668_length_759_cov_20.457680:1-759 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 307, Coverage: 30, minDepth: 8 [pilon] Confirmed 580 of 759 bases (76.42%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3668_length_759_cov_20.457680:1-759 [pilon] Processing NODE_511_length_1906_cov_10.235294:1-1906 [pilon] NODE_3893_length_729_cov_2.692434:1-729 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 46, Coverage: 8, minDepth: 5 [pilon] Confirmed 409 of 729 bases (56.10%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3893_length_729_cov_2.692434:1-729 [pilon] Processing NODE_15073_length_236_cov_17.843478:1-236 [pilon] NODE_6238_length_522_cov_7.872818:1-522 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 329 of 522 bases (63.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6238_length_522_cov_7.872818:1-522 [pilon] Processing NODE_14430_length_243_cov_10.819672:1-243 [pilon] NODE_14465_length_243_cov_10.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14465_length_243_cov_10.540984:1-243 [pilon] Processing NODE_14194_length_243_cov_12.663934:1-243 [pilon] NODE_13254_length_243_cov_20.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13254_length_243_cov_20.581967:1-243 [pilon] Processing NODE_11640_length_258_cov_18.810219:1-258 [pilon] NODE_7667_length_434_cov_29.150160:1-434 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 213, Coverage: 28, minDepth: 7 [pilon] Confirmed 316 of 434 bases (72.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7667_length_434_cov_29.150160:1-434 [pilon] Processing NODE_12694_length_243_cov_26.311475:1-243 [pilon] NODE_5812_length_554_cov_27.085450:1-554 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 297, Coverage: 50, minDepth: 13 [pilon] Confirmed 437 of 554 bases (78.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5812_length_554_cov_27.085450:1-554 [pilon] Processing NODE_10304_length_313_cov_5.505208:1-313 [pilon] NODE_6529_length_501_cov_22.192105:1-501 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 194, Coverage: 17, minDepth: 5 [pilon] Confirmed 329 of 501 bases (65.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6529_length_501_cov_22.192105:1-501 [pilon] Processing NODE_6371_length_512_cov_16.693095:1-512 [pilon] NODE_14015_length_243_cov_14.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14015_length_243_cov_14.090164:1-243 [pilon] Processing NODE_9067_length_363_cov_20.475207:1-363 [pilon] NODE_14964_length_243_cov_5.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14964_length_243_cov_5.942623:1-243 [pilon] Processing NODE_11674_length_258_cov_7.503650:1-258 [pilon] NODE_11114_length_279_cov_17.594937:1-279 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 56, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11114_length_279_cov_17.594937:1-279 [pilon] Processing NODE_11705_length_255_cov_31.716418:1-255 [pilon] NODE_775_length_1642_cov_1.388560:1-1642 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 70, Coverage: 6, minDepth: 5 [pilon] Confirmed 923 of 1642 bases (56.21%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_775_length_1642_cov_1.388560:1-1642 [pilon] Processing NODE_12656_length_243_cov_26.754098:1-243 [pilon] NODE_7842_length_425_cov_14.671053:1-425 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 92, Coverage: 20, minDepth: 5 [pilon] Confirmed 352 of 425 bases (82.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7842_length_425_cov_14.671053:1-425 [pilon] Processing NODE_460_length_1965_cov_5.255965:1-1965 [pilon] NODE_14736_length_243_cov_8.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14736_length_243_cov_8.245902:1-243 [pilon] Processing NODE_11954_length_247_cov_11.158730:1-247 [pilon] NODE_12368_length_243_cov_31.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 95, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12368_length_243_cov_31.721311:1-243 [pilon] Processing NODE_14_length_5470_cov_5.433913:1-5470 [pilon] NODE_8955_length_369_cov_7.016129:1-369 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 41, Coverage: 5, minDepth: 5 [pilon] Confirmed 228 of 369 bases (61.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8955_length_369_cov_7.016129:1-369 [pilon] Processing NODE_3759_length_746_cov_7.236800:1-746 [pilon] NODE_4751_length_639_cov_18.795367:1-639 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 221, Coverage: 34, minDepth: 9 [pilon] Confirmed 518 of 639 bases (81.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4751_length_639_cov_18.795367:1-639 [pilon] Processing NODE_14478_length_243_cov_10.426230:1-243 [pilon] NODE_3178_length_835_cov_15.756303:1-835 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 278, Coverage: 34, minDepth: 9 [pilon] Confirmed 580 of 835 bases (69.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3178_length_835_cov_15.756303:1-835 [pilon] Processing NODE_7042_length_468_cov_22.910663:1-468 [pilon] NODE_2025_length_1080_cov_16.340980:1-1080 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 372, Coverage: 25, minDepth: 6 [pilon] Confirmed 659 of 1080 bases (61.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2025_length_1080_cov_16.340980:1-1080 [pilon] Processing NODE_7848_length_425_cov_9.546053:1-425 [pilon] NODE_5113_length_609_cov_2.413934:1-609 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 33, Coverage: 7, minDepth: 5 [pilon] Confirmed 376 of 609 bases (61.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5113_length_609_cov_2.413934:1-609 [pilon] Processing NODE_12356_length_243_cov_31.918033:1-243 [pilon] NODE_10777_length_294_cov_17.520231:1-294 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 53, Coverage: 4, minDepth: 5 [pilon] Confirmed 144 of 294 bases (48.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10777_length_294_cov_17.520231:1-294 [pilon] Processing NODE_9637_length_340_cov_7.721461:1-340 [pilon] NODE_11194_length_276_cov_15.406452:1-276 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11194_length_276_cov_15.406452:1-276 [pilon] Processing NODE_12841_length_243_cov_24.672131:1-243 [pilon] NODE_1092_length_1444_cov_35.136054:1-1444 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 1092, Coverage: 66, minDepth: 17 [pilon] Confirmed 1319 of 1444 bases (91.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1092_length_1444_cov_35.136054:1-1444 [pilon] Processing NODE_10276_length_314_cov_32.720207:1-314 [pilon] NODE_5285_length_594_cov_2.566596:1-594 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 32, Coverage: 5, minDepth: 5 [pilon] Confirmed 291 of 594 bases (48.99%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5285_length_594_cov_2.566596:1-594 [pilon] Processing NODE_8067_length_414_cov_67.638225:1-414 [pilon] NODE_14443_length_243_cov_10.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14443_length_243_cov_10.721311:1-243 [pilon] Processing NODE_4018_length_714_cov_1.917369:1-714 [pilon] NODE_7498_length_443_cov_16.804348:1-443 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 147, Coverage: 10, minDepth: 5 [pilon] Confirmed 319 of 443 bases (72.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7498_length_443_cov_16.804348:1-443 [pilon] Processing NODE_11782_length_254_cov_7.067669:1-254 [pilon] NODE_8345_length_402_cov_47.604982:1-402 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 309, Coverage: 57, minDepth: 14 [pilon] Confirmed 352 of 402 bases (87.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8345_length_402_cov_47.604982:1-402 [pilon] Processing NODE_5597_length_571_cov_1.926667:1-571 [pilon] NODE_4454_length_665_cov_56.542279:1-665 log: [pilon] frags shovill.bam: coverage 110 [pilon] Total Reads: 723, Coverage: 110, minDepth: 28 [pilon] Confirmed 534 of 665 bases (80.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4454_length_665_cov_56.542279:1-665 [pilon] Processing NODE_7476_length_444_cov_18.396285:1-444 [pilon] NODE_12649_length_243_cov_26.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12649_length_243_cov_26.877049:1-243 [pilon] Processing NODE_8656_length_384_cov_24.129278:1-384 [pilon] NODE_15073_length_236_cov_17.843478:1-236 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 52, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 236 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15073_length_236_cov_17.843478:1-236 [pilon] Processing NODE_7873_length_424_cov_0.933993:1-424 [pilon] NODE_11640_length_258_cov_18.810219:1-258 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 56, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11640_length_258_cov_18.810219:1-258 [pilon] NODE_511_length_1906_cov_10.235294:1-1906 log: [pilon] Processing NODE_9103_length_361_cov_19.837500:1-361 [pilon] NODE_12694_length_243_cov_26.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 450, Coverage: 23, minDepth: 6 [pilon] Confirmed 1714 of 1906 bases (89.93%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_511_length_1906_cov_10.235294:1-1906 [pilon] Finished processing NODE_12694_length_243_cov_26.311475:1-243 [pilon] Processing NODE_8938_length_369_cov_18.657258:1-369 [pilon] Processing NODE_10126_length_321_cov_8.035000:1-321 [pilon] NODE_14430_length_243_cov_10.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14430_length_243_cov_10.819672:1-243 [pilon] Processing NODE_3236_length_827_cov_14.793201:1-827 [pilon] NODE_14194_length_243_cov_12.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14194_length_243_cov_12.663934:1-243 [pilon] Processing NODE_10592_length_301_cov_23.161111:1-301 [pilon] NODE_10304_length_313_cov_5.505208:1-313 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 33, Coverage: 3, minDepth: 5 [pilon] Confirmed 105 of 313 bases (33.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10304_length_313_cov_5.505208:1-313 [pilon] Processing NODE_11983_length_246_cov_25.952000:1-246 [pilon] NODE_6371_length_512_cov_16.693095:1-512 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 224, Coverage: 14, minDepth: 5 [pilon] Confirmed 331 of 512 bases (64.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6371_length_512_cov_16.693095:1-512 [pilon] Processing NODE_10477_length_306_cov_8.394595:1-306 [pilon] NODE_11674_length_258_cov_7.503650:1-258 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 23, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11674_length_258_cov_7.503650:1-258 [pilon] Processing NODE_2123_length_1053_cov_1.135193:1-1053 [pilon] NODE_9067_length_363_cov_20.475207:1-363 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 114, Coverage: 16, minDepth: 5 [pilon] Confirmed 261 of 363 bases (71.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9067_length_363_cov_20.475207:1-363 [pilon] Processing NODE_13116_length_243_cov_21.827869:1-243 [pilon] NODE_11705_length_255_cov_31.716418:1-255 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 91, Coverage: 11, minDepth: 5 [pilon] Confirmed 233 of 255 bases (91.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11705_length_255_cov_31.716418:1-255 [pilon] Processing NODE_12484_length_243_cov_29.377049:1-243 [pilon] NODE_11954_length_247_cov_11.158730:1-247 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 247 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11954_length_247_cov_11.158730:1-247 [pilon] Processing NODE_7800_length_427_cov_67.986928:1-427 [pilon] NODE_12656_length_243_cov_26.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12656_length_243_cov_26.754098:1-243 [pilon] Processing NODE_11458_length_264_cov_27.405594:1-264 [pilon] NODE_3759_length_746_cov_7.236800:1-746 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 123, Coverage: 14, minDepth: 5 [pilon] Confirmed 594 of 746 bases (79.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3759_length_746_cov_7.236800:1-746 [pilon] Processing NODE_13146_length_243_cov_21.532787:1-243 [pilon] NODE_14_length_5470_cov_5.433913:1-5470 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 734, Coverage: 17, minDepth: 5 [pilon] Confirmed 5234 of 5470 bases (95.69%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14_length_5470_cov_5.433913:1-5470 [pilon] Processing NODE_8066_length_415_cov_0.829932:1-415 [pilon] NODE_460_length_1965_cov_5.255965:1-1965 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 268, Coverage: 14, minDepth: 5 [pilon] Confirmed 1259 of 1965 bases (64.07%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_460_length_1965_cov_5.255965:1-1965 [pilon] Processing NODE_5658_length_566_cov_13.168539:1-566 [pilon] NODE_7042_length_468_cov_22.910663:1-468 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 182, Coverage: 28, minDepth: 7 [pilon] Confirmed 395 of 468 bases (84.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7042_length_468_cov_22.910663:1-468 [pilon] Processing NODE_10575_length_302_cov_21.812155:1-302 [pilon] NODE_14478_length_243_cov_10.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14478_length_243_cov_10.426230:1-243 [pilon] Processing NODE_7991_length_419_cov_0.711409:1-419 [pilon] NODE_9637_length_340_cov_7.721461:1-340 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 33, Coverage: 7, minDepth: 5 [pilon] Confirmed 223 of 340 bases (65.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9637_length_340_cov_7.721461:1-340 [pilon] Processing NODE_3381_length_800_cov_7.871870:1-800 [pilon] NODE_12356_length_243_cov_31.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12356_length_243_cov_31.918033:1-243 [pilon] Processing NODE_14639_length_243_cov_9.106557:1-243 [pilon] NODE_12841_length_243_cov_24.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12841_length_243_cov_24.672131:1-243 [pilon] NODE_7848_length_425_cov_9.546053:1-425 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 118, Coverage: 15, minDepth: 5 [pilon] Confirmed 319 of 425 bases (75.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7848_length_425_cov_9.546053:1-425 [pilon] Processing NODE_9455_length_348_cov_10.920705:1-348 [pilon] Processing NODE_4135_length_700_cov_12.720207:1-700 [pilon] NODE_10276_length_314_cov_32.720207:1-314 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 141, Coverage: 13, minDepth: 5 [pilon] Confirmed 273 of 314 bases (86.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10276_length_314_cov_32.720207:1-314 [pilon] Processing NODE_14014_length_243_cov_14.098361:1-243 [pilon] NODE_7476_length_444_cov_18.396285:1-444 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 152, Coverage: 10, minDepth: 5 [pilon] Confirmed 289 of 444 bases (65.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7476_length_444_cov_18.396285:1-444 [pilon] Processing NODE_1331_length_1328_cov_24.437448:1-1328 [pilon] NODE_9103_length_361_cov_19.837500:1-361 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 104, Coverage: 13, minDepth: 5 [pilon] Confirmed 274 of 361 bases (75.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9103_length_361_cov_19.837500:1-361 [pilon] Processing NODE_15172_length_176_cov_7.690909:1-176 [pilon] NODE_11782_length_254_cov_7.067669:1-254 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 254 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11782_length_254_cov_7.067669:1-254 [pilon] Processing NODE_6640_length_495_cov_1.663102:1-495 [pilon] NODE_8067_length_414_cov_67.638225:1-414 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 455, Coverage: 79, minDepth: 20 [pilon] Confirmed 368 of 414 bases (88.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8067_length_414_cov_67.638225:1-414 [pilon] Processing NODE_6458_length_507_cov_0.663212:1-507 [pilon] NODE_13116_length_243_cov_21.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13116_length_243_cov_21.827869:1-243 [pilon] Processing NODE_8391_length_400_cov_15.534050:1-400 [pilon] NODE_7873_length_424_cov_0.933993:1-424 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 19, Coverage: 6, minDepth: 5 [pilon] Confirmed 288 of 424 bases (67.92%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7873_length_424_cov_0.933993:1-424 [pilon] Processing NODE_14119_length_243_cov_13.336066:1-243 [pilon] NODE_4018_length_714_cov_1.917369:1-714 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 318 of 714 bases (44.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4018_length_714_cov_1.917369:1-714 [pilon] Processing NODE_920_length_1545_cov_3.057584:1-1545 [pilon] NODE_3236_length_827_cov_14.793201:1-827 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 242, Coverage: 32, minDepth: 8 [pilon] Confirmed 667 of 827 bases (80.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3236_length_827_cov_14.793201:1-827 [pilon] Processing NODE_7915_length_422_cov_22.754153:1-422 [pilon] NODE_5597_length_571_cov_1.926667:1-571 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 257 of 571 bases (45.01%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5597_length_571_cov_1.926667:1-571 [pilon] Processing NODE_10119_length_321_cov_11.365000:1-321 [pilon] NODE_2123_length_1053_cov_1.135193:1-1053 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 538 of 1053 bases (51.09%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2123_length_1053_cov_1.135193:1-1053 [pilon] Processing NODE_12910_length_243_cov_24.000000:1-243 [pilon] NODE_10592_length_301_cov_23.161111:1-301 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 52, Coverage: 3, minDepth: 5 [pilon] Confirmed 75 of 301 bases (24.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10592_length_301_cov_23.161111:1-301 [pilon] Processing NODE_8812_length_376_cov_25.611765:1-376 [pilon] NODE_8656_length_384_cov_24.129278:1-384 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 143, Coverage: 18, minDepth: 5 [pilon] Confirmed 252 of 384 bases (65.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8656_length_384_cov_24.129278:1-384 [pilon] Processing NODE_8852_length_374_cov_26.252964:1-374 [pilon] NODE_8938_length_369_cov_18.657258:1-369 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 101, Coverage: 13, minDepth: 5 [pilon] Confirmed 227 of 369 bases (61.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8938_length_369_cov_18.657258:1-369 [pilon] Processing NODE_8759_length_379_cov_45.282946:1-379 [pilon] NODE_10126_length_321_cov_8.035000:1-321 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 28, Coverage: 2, minDepth: 5 [pilon] Confirmed 62 of 321 bases (19.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10126_length_321_cov_8.035000:1-321 [pilon] Processing NODE_4033_length_712_cov_3.042301:1-712 [pilon] NODE_11983_length_246_cov_25.952000:1-246 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 78, Coverage: 11, minDepth: 5 [pilon] Confirmed 219 of 246 bases (89.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11983_length_246_cov_25.952000:1-246 [pilon] Processing NODE_2338_length_1003_cov_9.094104:1-1003 [pilon] NODE_10477_length_306_cov_8.394595:1-306 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10477_length_306_cov_8.394595:1-306 [pilon] Processing NODE_434_length_1991_cov_4.037968:1-1991 [pilon] NODE_11458_length_264_cov_27.405594:1-264 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 87, Coverage: 10, minDepth: 5 [pilon] Confirmed 205 of 264 bases (77.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11458_length_264_cov_27.405594:1-264 [pilon] Processing NODE_6635_length_495_cov_2.663102:1-495 [pilon] NODE_7991_length_419_cov_0.711409:1-419 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 6 of 419 bases (1.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7991_length_419_cov_0.711409:1-419 [pilon] Processing NODE_1366_length_1311_cov_10.136975:1-1311 [pilon] NODE_12484_length_243_cov_29.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12484_length_243_cov_29.377049:1-243 [pilon] Processing NODE_6917_length_476_cov_65.718310:1-476 [pilon] NODE_5658_length_566_cov_13.168539:1-566 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 148, Coverage: 20, minDepth: 5 [pilon] Confirmed 487 of 566 bases (86.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5658_length_566_cov_13.168539:1-566 [pilon] Processing NODE_4746_length_639_cov_26.054054:1-639 [pilon] NODE_13146_length_243_cov_21.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13146_length_243_cov_21.532787:1-243 [pilon] Processing NODE_1096_length_1443_cov_9.197428:1-1443 [pilon] NODE_7800_length_427_cov_67.986928:1-427 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 466, Coverage: 86, minDepth: 22 [pilon] Confirmed 365 of 427 bases (85.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7800_length_427_cov_67.986928:1-427 [pilon] Processing NODE_387_length_2063_cov_14.794542:1-2063 [pilon] NODE_10575_length_302_cov_21.812155:1-302 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 82, Coverage: 6, minDepth: 5 [pilon] Confirmed 172 of 302 bases (56.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10575_length_302_cov_21.812155:1-302 [pilon] Processing NODE_3444_length_792_cov_16.985097:1-792 [pilon] NODE_8066_length_415_cov_0.829932:1-415 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 23 of 415 bases (5.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8066_length_415_cov_0.829932:1-415 [pilon] Processing NODE_4162_length_697_cov_26.175347:1-697 [pilon] NODE_8391_length_400_cov_15.534050:1-400 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 114, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 400 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8391_length_400_cov_15.534050:1-400 [pilon] Processing NODE_10665_length_299_cov_28.196629:1-299 [pilon] NODE_9455_length_348_cov_10.920705:1-348 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 52, Coverage: 4, minDepth: 5 [pilon] Confirmed 145 of 348 bases (41.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9455_length_348_cov_10.920705:1-348 [pilon] Processing NODE_905_length_1553_cov_7.826117:1-1553 [pilon] NODE_3381_length_800_cov_7.871870:1-800 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 124, Coverage: 10, minDepth: 5 [pilon] Confirmed 392 of 800 bases (49.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3381_length_800_cov_7.871870:1-800 [pilon] Processing NODE_11944_length_248_cov_7.055118:1-248 [pilon] NODE_4135_length_700_cov_12.720207:1-700 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 193, Coverage: 22, minDepth: 6 [pilon] Confirmed 434 of 700 bases (62.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4135_length_700_cov_12.720207:1-700 [pilon] Processing NODE_6268_length_520_cov_1.350877:1-520 [pilon] NODE_14639_length_243_cov_9.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14639_length_243_cov_9.106557:1-243 [pilon] Processing NODE_6520_length_502_cov_2.212598:1-502 [pilon] NODE_14014_length_243_cov_14.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14014_length_243_cov_14.098361:1-243 [pilon] Processing NODE_13303_length_243_cov_20.213115:1-243 [pilon] NODE_15172_length_176_cov_7.690909:1-176 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 176 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15172_length_176_cov_7.690909:1-176 [pilon] Processing NODE_3194_length_833_cov_43.581461:1-833 [pilon] NODE_6640_length_495_cov_1.663102:1-495 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 25, Coverage: 5, minDepth: 5 [pilon] Confirmed 327 of 495 bases (66.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6640_length_495_cov_1.663102:1-495 [pilon] Processing NODE_2375_length_996_cov_2.756571:1-996 [pilon] NODE_1331_length_1328_cov_24.437448:1-1328 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 707, Coverage: 40, minDepth: 10 [pilon] Confirmed 1164 of 1328 bases (87.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1331_length_1328_cov_24.437448:1-1328 [pilon] Processing NODE_2539_length_959_cov_1.120525:1-959 [pilon] NODE_10119_length_321_cov_11.365000:1-321 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 321 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10119_length_321_cov_11.365000:1-321 [pilon] Processing NODE_10544_length_303_cov_16.923077:1-303 [pilon] NODE_6458_length_507_cov_0.663212:1-507 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 507 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6458_length_507_cov_0.663212:1-507 [pilon] Processing NODE_13136_length_243_cov_21.631148:1-243 [pilon] NODE_12910_length_243_cov_24.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12910_length_243_cov_24.000000:1-243 [pilon] Processing NODE_12268_length_243_cov_34.114754:1-243 [pilon] NODE_920_length_1545_cov_3.057584:1-1545 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 111, Coverage: 9, minDepth: 5 [pilon] Confirmed 917 of 1545 bases (59.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_920_length_1545_cov_3.057584:1-1545 [pilon] Processing NODE_3355_length_804_cov_35.042460:1-804 [pilon] NODE_6635_length_495_cov_2.663102:1-495 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 288 of 495 bases (58.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6635_length_495_cov_2.663102:1-495 [pilon] Processing NODE_385_length_2065_cov_9.805041:1-2065 [pilon] NODE_7915_length_422_cov_22.754153:1-422 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 179, Coverage: 12, minDepth: 5 [pilon] Confirmed 177 of 422 bases (41.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7915_length_422_cov_22.754153:1-422 [pilon] Processing NODE_6962_length_474_cov_1.515581:1-474 [pilon] NODE_14119_length_243_cov_13.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14119_length_243_cov_13.336066:1-243 [pilon] Processing NODE_7772_length_429_cov_7.996753:1-429 [pilon] NODE_8812_length_376_cov_25.611765:1-376 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 137, Coverage: 21, minDepth: 5 [pilon] Confirmed 295 of 376 bases (78.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8812_length_376_cov_25.611765:1-376 [pilon] Processing NODE_2469_length_973_cov_23.778169:1-973 [pilon] NODE_8852_length_374_cov_26.252964:1-374 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 151, Coverage: 19, minDepth: 5 [pilon] Confirmed 322 of 374 bases (86.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8852_length_374_cov_26.252964:1-374 [pilon] Processing NODE_2308_length_1008_cov_22.817362:1-1008 [pilon] NODE_1366_length_1311_cov_10.136975:1-1311 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 369, Coverage: 28, minDepth: 7 [pilon] Confirmed 1121 of 1311 bases (85.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1366_length_1311_cov_10.136975:1-1311 [pilon] Processing NODE_12760_length_243_cov_25.450820:1-243 [pilon] NODE_8759_length_379_cov_45.282946:1-379 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 247, Coverage: 36, minDepth: 9 [pilon] Confirmed 295 of 379 bases (77.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8759_length_379_cov_45.282946:1-379 [pilon] Processing NODE_10597_length_301_cov_9.533333:1-301 [pilon] NODE_4033_length_712_cov_3.042301:1-712 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 60, Coverage: 8, minDepth: 5 [pilon] Confirmed 454 of 712 bases (63.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4033_length_712_cov_3.042301:1-712 [pilon] Processing NODE_6264_length_520_cov_19.686717:1-520 [pilon] NODE_2338_length_1003_cov_9.094104:1-1003 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 180, Coverage: 19, minDepth: 5 [pilon] Confirmed 724 of 1003 bases (72.18%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2338_length_1003_cov_9.094104:1-1003 [pilon] Processing NODE_10214_length_316_cov_17.994872:1-316 [pilon] NODE_434_length_1991_cov_4.037968:1-1991 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 175, Coverage: 10, minDepth: 5 [pilon] Confirmed 1470 of 1991 bases (73.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_434_length_1991_cov_4.037968:1-1991 [pilon] Processing NODE_7650_length_435_cov_18.108280:1-435 [pilon] NODE_10665_length_299_cov_28.196629:1-299 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 104, Coverage: 14, minDepth: 5 [pilon] Confirmed 224 of 299 bases (74.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10665_length_299_cov_28.196629:1-299 [pilon] Processing NODE_12463_length_243_cov_29.680328:1-243 [pilon] NODE_4162_length_697_cov_26.175347:1-697 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 363, Coverage: 45, minDepth: 11 [pilon] Confirmed 506 of 697 bases (72.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4162_length_697_cov_26.175347:1-697 [pilon] Processing NODE_13451_length_243_cov_18.827869:1-243 [pilon] NODE_1096_length_1443_cov_9.197428:1-1443 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 298, Coverage: 22, minDepth: 6 [pilon] Confirmed 1030 of 1443 bases (71.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1096_length_1443_cov_9.197428:1-1443 [pilon] Processing NODE_13686_length_243_cov_16.557377:1-243 [pilon] NODE_6917_length_476_cov_65.718310:1-476 log: [pilon] frags shovill.bam: coverage 92 [pilon] Total Reads: 562, Coverage: 92, minDepth: 23 [pilon] Confirmed 417 of 476 bases (87.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6917_length_476_cov_65.718310:1-476 [pilon] Processing NODE_10492_length_305_cov_18.869565:1-305 [pilon] NODE_4746_length_639_cov_26.054054:1-639 log: [pilon] NODE_3444_length_792_cov_16.985097:1-792 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 274, Coverage: 32, minDepth: 8 [pilon] Confirmed 722 of 792 bases (91.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 323, Coverage: 49, minDepth: 12 [pilon] Confirmed 506 of 639 bases (79.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4746_length_639_cov_26.054054:1-639 [pilon] Finished processing NODE_3444_length_792_cov_16.985097:1-792 [pilon] Processing NODE_6938_length_475_cov_16.615819:1-475 [pilon] Processing NODE_8306_length_404_cov_17.250883:1-404 [pilon] NODE_387_length_2063_cov_14.794542:1-2063 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 802, Coverage: 44, minDepth: 11 [pilon] Confirmed 1835 of 2063 bases (88.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_387_length_2063_cov_14.794542:1-2063 [pilon] Processing NODE_6679_length_492_cov_15.563342:1-492 [pilon] NODE_6268_length_520_cov_1.350877:1-520 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 520 bases (25.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6268_length_520_cov_1.350877:1-520 [pilon] Processing NODE_9184_length_357_cov_38.436441:1-357 [pilon] NODE_11944_length_248_cov_7.055118:1-248 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 18, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 248 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11944_length_248_cov_7.055118:1-248 [pilon] Processing NODE_98_length_3009_cov_19.201870:1-3009 [pilon] NODE_6520_length_502_cov_2.212598:1-502 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 29, Coverage: 6, minDepth: 5 [pilon] Confirmed 280 of 502 bases (55.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6520_length_502_cov_2.212598:1-502 [pilon] Processing NODE_11698_length_256_cov_7.562963:1-256 [pilon] NODE_905_length_1553_cov_7.826117:1-1553 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 385, Coverage: 28, minDepth: 7 [pilon] Confirmed 1061 of 1553 bases (68.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_905_length_1553_cov_7.826117:1-1553 [pilon] Processing NODE_13460_length_243_cov_18.762295:1-243 [pilon] NODE_12760_length_243_cov_25.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12760_length_243_cov_25.450820:1-243 [pilon] Processing NODE_1730_length_1170_cov_25.853194:1-1170 [pilon] NODE_13303_length_243_cov_20.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13303_length_243_cov_20.213115:1-243 [pilon] Processing NODE_1674_length_1191_cov_18.700935:1-1191 [pilon] NODE_10544_length_303_cov_16.923077:1-303 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 52, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 303 bases (42.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10544_length_303_cov_16.923077:1-303 [pilon] Processing NODE_4598_length_653_cov_21.289474:1-653 [pilon] NODE_13451_length_243_cov_18.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13451_length_243_cov_18.827869:1-243 [pilon] Processing NODE_9045_length_364_cov_13.222222:1-364 [pilon] NODE_2375_length_996_cov_2.756571:1-996 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 67, Coverage: 8, minDepth: 5 [pilon] Confirmed 638 of 996 bases (64.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2375_length_996_cov_2.756571:1-996 [pilon] Processing NODE_2004_length_1085_cov_31.202282:1-1085 [pilon] NODE_12268_length_243_cov_34.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 83, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12268_length_243_cov_34.114754:1-243 [pilon] Processing NODE_1086_length_1448_cov_10.813866:1-1448 [pilon] NODE_6962_length_474_cov_1.515581:1-474 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 111 of 474 bases (23.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6962_length_474_cov_1.515581:1-474 [pilon] Processing NODE_11457_length_264_cov_27.930070:1-264 [pilon] NODE_7772_length_429_cov_7.996753:1-429 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 63, Coverage: 9, minDepth: 5 [pilon] Confirmed 280 of 429 bases (65.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7772_length_429_cov_7.996753:1-429 [pilon] Processing NODE_12156_length_243_cov_38.975410:1-243 [pilon] NODE_2539_length_959_cov_1.120525:1-959 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 41, Coverage: 5, minDepth: 5 [pilon] Confirmed 540 of 959 bases (56.31%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2539_length_959_cov_1.120525:1-959 [pilon] Processing NODE_11792_length_253_cov_14.212121:1-253 [pilon] NODE_13686_length_243_cov_16.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13686_length_243_cov_16.557377:1-243 [pilon] Processing NODE_5277_length_594_cov_23.699789:1-594 [pilon] NODE_3194_length_833_cov_43.581461:1-833 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 685, Coverage: 80, minDepth: 20 [pilon] Confirmed 628 of 833 bases (75.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3194_length_833_cov_43.581461:1-833 [pilon] Processing NODE_9659_length_339_cov_19.495413:1-339 [pilon] NODE_3355_length_804_cov_35.042460:1-804 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 587, Coverage: 71, minDepth: 18 [pilon] Confirmed 566 of 804 bases (70.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3355_length_804_cov_35.042460:1-804 [pilon] Processing NODE_3434_length_794_cov_3.163447:1-794 [pilon] NODE_13136_length_243_cov_21.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13136_length_243_cov_21.631148:1-243 [pilon] Processing NODE_2394_length_991_cov_14.641379:1-991 [pilon] NODE_385_length_2065_cov_9.805041:1-2065 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 428, Coverage: 27, minDepth: 7 [pilon] Confirmed 1736 of 2065 bases (84.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_385_length_2065_cov_9.805041:1-2065 [pilon] Processing NODE_10985_length_285_cov_12.896341:1-285 [pilon] NODE_2469_length_973_cov_23.778169:1-973 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 484, Coverage: 45, minDepth: 11 [pilon] Confirmed 809 of 973 bases (83.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2469_length_973_cov_23.778169:1-973 [pilon] Processing NODE_10571_length_302_cov_28.022099:1-302 [pilon] NODE_6264_length_520_cov_19.686717:1-520 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 186, Coverage: 33, minDepth: 8 [pilon] Confirmed 421 of 520 bases (80.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6264_length_520_cov_19.686717:1-520 [pilon] Processing NODE_4489_length_663_cov_1.212177:1-663 [pilon] NODE_2308_length_1008_cov_22.817362:1-1008 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 459, Coverage: 42, minDepth: 11 [pilon] Confirmed 747 of 1008 bases (74.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2308_length_1008_cov_22.817362:1-1008 [pilon] Processing NODE_323_length_2185_cov_29.578973:1-2185 [pilon] NODE_10597_length_301_cov_9.533333:1-301 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 31, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 301 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10597_length_301_cov_9.533333:1-301 [pilon] Processing NODE_4423_length_669_cov_1.764599:1-669 [pilon] NODE_12463_length_243_cov_29.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12463_length_243_cov_29.680328:1-243 [pilon] Processing NODE_3622_length_765_cov_14.127329:1-765 [pilon] NODE_7650_length_435_cov_18.108280:1-435 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 128, Coverage: 20, minDepth: 5 [pilon] Confirmed 306 of 435 bases (70.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7650_length_435_cov_18.108280:1-435 [pilon] Processing NODE_12800_length_243_cov_25.032787:1-243 [pilon] NODE_10214_length_316_cov_17.994872:1-316 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 67, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 316 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10214_length_316_cov_17.994872:1-316 [pilon] Processing NODE_8606_length_387_cov_33.691729:1-387 [pilon] NODE_8306_length_404_cov_17.250883:1-404 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 105, Coverage: 16, minDepth: 5 [pilon] Confirmed 263 of 404 bases (65.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8306_length_404_cov_17.250883:1-404 [pilon] Processing NODE_7749_length_430_cov_0.556634:1-430 [pilon] NODE_10492_length_305_cov_18.869565:1-305 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 66, Coverage: 9, minDepth: 5 [pilon] Confirmed 249 of 305 bases (81.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10492_length_305_cov_18.869565:1-305 [pilon] Processing NODE_9006_length_366_cov_18.346939:1-366 [pilon] NODE_6938_length_475_cov_16.615819:1-475 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 162, Coverage: 22, minDepth: 6 [pilon] Confirmed 372 of 475 bases (78.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6938_length_475_cov_16.615819:1-475 [pilon] Processing NODE_10306_length_312_cov_38.178010:1-312 [pilon] NODE_6679_length_492_cov_15.563342:1-492 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 149, Coverage: 21, minDepth: 5 [pilon] Confirmed 309 of 492 bases (62.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6679_length_492_cov_15.563342:1-492 [pilon] Processing NODE_2254_length_1020_cov_2.886541:1-1020 [pilon] NODE_1730_length_1170_cov_25.853194:1-1170 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 642, Coverage: 60, minDepth: 15 [pilon] Confirmed 793 of 1170 bases (67.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1730_length_1170_cov_25.853194:1-1170 [pilon] Processing NODE_1089_length_1446_cov_42.261887:1-1446 [pilon] NODE_9045_length_364_cov_13.222222:1-364 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 66, Coverage: 7, minDepth: 5 [pilon] Confirmed 215 of 364 bases (59.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9045_length_364_cov_13.222222:1-364 [pilon] Processing NODE_4982_length_620_cov_2.621242:1-620 [pilon] NODE_11698_length_256_cov_7.562963:1-256 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 256 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11698_length_256_cov_7.562963:1-256 [pilon] Processing NODE_12155_length_243_cov_38.983607:1-243 [pilon] NODE_9184_length_357_cov_38.436441:1-357 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 204, Coverage: 33, minDepth: 8 [pilon] Confirmed 316 of 357 bases (88.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9184_length_357_cov_38.436441:1-357 [pilon] Processing NODE_709_length_1699_cov_10.545627:1-1699 [pilon] NODE_13460_length_243_cov_18.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13460_length_243_cov_18.762295:1-243 [pilon] Processing NODE_13902_length_243_cov_14.868852:1-243 [pilon] NODE_10985_length_285_cov_12.896341:1-285 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 49, Coverage: 2, minDepth: 5 [pilon] Confirmed 40 of 285 bases (14.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10985_length_285_cov_12.896341:1-285 [pilon] Processing NODE_3803_length_740_cov_20.035541:1-740 [pilon] NODE_98_length_3009_cov_19.201870:1-3009 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 1355, Coverage: 53, minDepth: 13 [pilon] Confirmed 2413 of 3009 bases (80.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_98_length_3009_cov_19.201870:1-3009 [pilon] Processing NODE_9784_length_335_cov_17.714953:1-335 [pilon] NODE_1674_length_1191_cov_18.700935:1-1191 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 450, Coverage: 34, minDepth: 9 [pilon] Confirmed 797 of 1191 bases (66.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1674_length_1191_cov_18.700935:1-1191 [pilon] Processing NODE_8037_length_416_cov_39.494915:1-416 [pilon] NODE_4598_length_653_cov_21.289474:1-653 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 305, Coverage: 16, minDepth: 5 [pilon] Confirmed 406 of 653 bases (62.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4598_length_653_cov_21.289474:1-653 [pilon] Processing NODE_1680_length_1189_cov_18.531835:1-1189 [pilon] NODE_11457_length_264_cov_27.930070:1-264 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 82, Coverage: 9, minDepth: 5 [pilon] Confirmed 221 of 264 bases (83.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11457_length_264_cov_27.930070:1-264 [pilon] Processing NODE_137_length_2789_cov_28.247751:1-2789 [pilon] NODE_11792_length_253_cov_14.212121:1-253 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 45, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 253 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11792_length_253_cov_14.212121:1-253 [pilon] Processing NODE_13819_length_243_cov_15.516393:1-243 [pilon] NODE_3434_length_794_cov_3.163447:1-794 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 58, Coverage: 9, minDepth: 5 [pilon] Confirmed 510 of 794 bases (64.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3434_length_794_cov_3.163447:1-794 [pilon] Processing NODE_8533_length_392_cov_29.586716:1-392 [pilon] NODE_12156_length_243_cov_38.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12156_length_243_cov_38.975410:1-243 [pilon] Processing NODE_120_length_2887_cov_16.683297:1-2887 [pilon] NODE_5277_length_594_cov_23.699789:1-594 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 268, Coverage: 23, minDepth: 6 [pilon] Confirmed 413 of 594 bases (69.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5277_length_594_cov_23.699789:1-594 [pilon] NODE_9659_length_339_cov_19.495413:1-339 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 92, Coverage: 12, minDepth: 5 [pilon] Confirmed 234 of 339 bases (69.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9659_length_339_cov_19.495413:1-339 [pilon] Processing NODE_9255_length_355_cov_23.055556:1-355 [pilon] Processing NODE_973_length_1512_cov_16.711718:1-1512 [pilon] NODE_1086_length_1448_cov_10.813866:1-1448 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 332, Coverage: 30, minDepth: 8 [pilon] Confirmed 1287 of 1448 bases (88.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1086_length_1448_cov_10.813866:1-1448 [pilon] Processing NODE_7775_length_429_cov_1.782468:1-429 [pilon] NODE_2004_length_1085_cov_31.202282:1-1085 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 682, Coverage: 62, minDepth: 16 [pilon] Confirmed 843 of 1085 bases (77.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2004_length_1085_cov_31.202282:1-1085 [pilon] Processing NODE_10301_length_313_cov_11.026042:1-313 [pilon] NODE_2394_length_991_cov_14.641379:1-991 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 313, Coverage: 26, minDepth: 7 [pilon] Confirmed 771 of 991 bases (77.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2394_length_991_cov_14.641379:1-991 [pilon] Processing NODE_8475_length_395_cov_26.638686:1-395 [pilon] NODE_4489_length_663_cov_1.212177:1-663 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 28, Coverage: 5, minDepth: 5 [pilon] Confirmed 419 of 663 bases (63.20%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4489_length_663_cov_1.212177:1-663 [pilon] Processing NODE_1785_length_1152_cov_3.040737:1-1152 [pilon] NODE_10571_length_302_cov_28.022099:1-302 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 108, Coverage: 8, minDepth: 5 [pilon] Confirmed 190 of 302 bases (62.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10571_length_302_cov_28.022099:1-302 [pilon] Processing NODE_787_length_1631_cov_1.972185:1-1631 [pilon] NODE_4423_length_669_cov_1.764599:1-669 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 245 of 669 bases (36.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4423_length_669_cov_1.764599:1-669 [pilon] Processing NODE_8541_length_392_cov_11.918819:1-392 [pilon] NODE_3622_length_765_cov_14.127329:1-765 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 223, Coverage: 30, minDepth: 8 [pilon] Confirmed 583 of 765 bases (76.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3622_length_765_cov_14.127329:1-765 [pilon] Processing NODE_12127_length_243_cov_42.368852:1-243 [pilon] NODE_12800_length_243_cov_25.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12800_length_243_cov_25.032787:1-243 [pilon] Processing NODE_8303_length_404_cov_40.424028:1-404 [pilon] NODE_8606_length_387_cov_33.691729:1-387 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 237, Coverage: 28, minDepth: 7 [pilon] Confirmed 327 of 387 bases (84.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8606_length_387_cov_33.691729:1-387 [pilon] Processing NODE_1605_length_1214_cov_15.450137:1-1214 [pilon] NODE_1089_length_1446_cov_42.261887:1-1446 log: [pilon] frags shovill.bam: coverage 108 [pilon] Total Reads: 1251, Coverage: 108, minDepth: 27 [pilon] Confirmed 1281 of 1446 bases (88.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1089_length_1446_cov_42.261887:1-1446 [pilon] Processing NODE_12923_length_243_cov_23.827869:1-243 [pilon] NODE_10306_length_312_cov_38.178010:1-312 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 128, Coverage: 8, minDepth: 5 [pilon] Confirmed 174 of 312 bases (55.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10306_length_312_cov_38.178010:1-312 [pilon] Processing NODE_1975_length_1093_cov_1.910494:1-1093 [pilon] NODE_4982_length_620_cov_2.621242:1-620 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 41, Coverage: 8, minDepth: 5 [pilon] Confirmed 423 of 620 bases (68.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4982_length_620_cov_2.621242:1-620 [pilon] Processing NODE_11433_length_266_cov_24.606897:1-266 [pilon] NODE_7749_length_430_cov_0.556634:1-430 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 5, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 430 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7749_length_430_cov_0.556634:1-430 [pilon] Processing NODE_14543_length_243_cov_9.959016:1-243 [pilon] NODE_9006_length_366_cov_18.346939:1-366 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 97, Coverage: 9, minDepth: 5 [pilon] Confirmed 246 of 366 bases (67.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9006_length_366_cov_18.346939:1-366 [pilon] Processing NODE_1155_length_1415_cov_14.080371:1-1415 [pilon] NODE_323_length_2185_cov_29.578973:1-2185 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 1403, Coverage: 79, minDepth: 20 [pilon] Confirmed 1906 of 2185 bases (87.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_323_length_2185_cov_29.578973:1-2185 [pilon] Processing NODE_6135_length_529_cov_16.139706:1-529 [pilon] NODE_3803_length_740_cov_20.035541:1-740 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 244, Coverage: 26, minDepth: 7 [pilon] Confirmed 528 of 740 bases (71.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3803_length_740_cov_20.035541:1-740 [pilon] Processing NODE_13736_length_243_cov_16.139344:1-243 [pilon] NODE_2254_length_1020_cov_2.886541:1-1020 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 61, Coverage: 8, minDepth: 5 [pilon] Confirmed 520 of 1020 bases (50.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2254_length_1020_cov_2.886541:1-1020 [pilon] Processing NODE_15081_length_233_cov_17.723214:1-233 [pilon] NODE_12155_length_243_cov_38.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12155_length_243_cov_38.983607:1-243 [pilon] Processing NODE_7888_length_423_cov_22.142384:1-423 [pilon] NODE_13902_length_243_cov_14.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13902_length_243_cov_14.868852:1-243 [pilon] Processing NODE_1216_length_1384_cov_1.898654:1-1384 [pilon] NODE_9784_length_335_cov_17.714953:1-335 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 91, Coverage: 14, minDepth: 5 [pilon] Confirmed 280 of 335 bases (83.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9784_length_335_cov_17.714953:1-335 [pilon] Processing NODE_6918_length_476_cov_26.419718:1-476 [pilon] NODE_709_length_1699_cov_10.545627:1-1699 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 484, Coverage: 27, minDepth: 7 [pilon] Confirmed 1201 of 1699 bases (70.69%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_709_length_1699_cov_10.545627:1-1699 [pilon] Processing NODE_9836_length_333_cov_12.801887:1-333 [pilon] NODE_8037_length_416_cov_39.494915:1-416 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 264, Coverage: 46, minDepth: 12 [pilon] Confirmed 368 of 416 bases (88.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8037_length_416_cov_39.494915:1-416 [pilon] Processing NODE_10650_length_300_cov_11.206704:1-300 [pilon] NODE_1680_length_1189_cov_18.531835:1-1189 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 347, Coverage: 22, minDepth: 6 [pilon] Confirmed 948 of 1189 bases (79.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1680_length_1189_cov_18.531835:1-1189 [pilon] Processing NODE_14719_length_243_cov_8.442623:1-243 [pilon] NODE_13819_length_243_cov_15.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13819_length_243_cov_15.516393:1-243 [pilon] Processing NODE_1143_length_1422_cov_13.245196:1-1422 [pilon] NODE_9255_length_355_cov_23.055556:1-355 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 115, Coverage: 15, minDepth: 5 [pilon] Confirmed 256 of 355 bases (72.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9255_length_355_cov_23.055556:1-355 [pilon] Processing NODE_12424_length_243_cov_30.418033:1-243 [pilon] NODE_8533_length_392_cov_29.586716:1-392 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 190, Coverage: 33, minDepth: 8 [pilon] Confirmed 356 of 392 bases (90.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8533_length_392_cov_29.586716:1-392 [pilon] Processing NODE_4267_length_685_cov_2.955674:1-685 [pilon] NODE_12923_length_243_cov_23.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12923_length_243_cov_23.827869:1-243 [pilon] Processing NODE_893_length_1564_cov_20.727651:1-1564 [pilon] NODE_13736_length_243_cov_16.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13736_length_243_cov_16.139344:1-243 [pilon] Processing NODE_6325_length_515_cov_17.609137:1-515 [pilon] NODE_11433_length_266_cov_24.606897:1-266 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 81, Coverage: 9, minDepth: 5 [pilon] Confirmed 204 of 266 bases (76.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11433_length_266_cov_24.606897:1-266 [pilon] Processing NODE_12826_length_243_cov_24.786885:1-243 [pilon] NODE_8475_length_395_cov_26.638686:1-395 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 175, Coverage: 11, minDepth: 5 [pilon] Confirmed 234 of 395 bases (59.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8475_length_395_cov_26.638686:1-395 [pilon] Processing NODE_5550_length_574_cov_1.529801:1-574 [pilon] NODE_10301_length_313_cov_11.026042:1-313 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 45, Coverage: 4, minDepth: 5 [pilon] Confirmed 142 of 313 bases (45.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10301_length_313_cov_11.026042:1-313 [pilon] Processing NODE_305_length_2235_cov_9.442289:1-2235 [pilon] NODE_137_length_2789_cov_28.247751:1-2789 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 1763, Coverage: 79, minDepth: 20 [pilon] Confirmed 2298 of 2789 bases (82.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_137_length_2789_cov_28.247751:1-2789 [pilon] Processing NODE_1474_length_1273_cov_2.294271:1-1273 [pilon] NODE_7775_length_429_cov_1.782468:1-429 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 222 of 429 bases (51.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7775_length_429_cov_1.782468:1-429 [pilon] Processing NODE_14042_length_243_cov_13.901639:1-243 [pilon] NODE_973_length_1512_cov_16.711718:1-1512 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 635, Coverage: 36, minDepth: 9 [pilon] Confirmed 1389 of 1512 bases (91.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_973_length_1512_cov_16.711718:1-1512 [pilon] Processing NODE_10393_length_309_cov_16.659574:1-309 [pilon] NODE_1785_length_1152_cov_3.040737:1-1152 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 75, Coverage: 8, minDepth: 5 [pilon] Confirmed 460 of 1152 bases (39.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1785_length_1152_cov_3.040737:1-1152 [pilon] Processing NODE_2376_length_995_cov_33.667048:1-995 [pilon] NODE_120_length_2887_cov_16.683297:1-2887 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 1037, Coverage: 42, minDepth: 11 [pilon] Confirmed 2203 of 2887 bases (76.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_120_length_2887_cov_16.683297:1-2887 [pilon] Processing NODE_4196_length_694_cov_16.441536:1-694 [pilon] NODE_8303_length_404_cov_40.424028:1-404 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 265, Coverage: 33, minDepth: 8 [pilon] Confirmed 345 of 404 bases (85.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8303_length_404_cov_40.424028:1-404 [pilon] Processing NODE_3985_length_716_cov_16.578151:1-716 [pilon] NODE_787_length_1631_cov_1.972185:1-1631 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 98, Coverage: 7, minDepth: 5 [pilon] Confirmed 1016 of 1631 bases (62.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_787_length_1631_cov_1.972185:1-1631 [pilon] Processing NODE_9248_length_356_cov_11.795745:1-356 [pilon] NODE_8541_length_392_cov_11.918819:1-392 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 69, Coverage: 4, minDepth: 5 [pilon] Confirmed 181 of 392 bases (46.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12127_length_243_cov_42.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12127_length_243_cov_42.368852:1-243 [pilon] Processing NODE_5002_length_618_cov_20.092555:1-618 [pilon] Finished processing NODE_8541_length_392_cov_11.918819:1-392 [pilon] Processing NODE_13530_length_243_cov_18.073770:1-243 [pilon] NODE_1605_length_1214_cov_15.450137:1-1214 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 419, Coverage: 30, minDepth: 8 [pilon] Confirmed 946 of 1214 bases (77.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1605_length_1214_cov_15.450137:1-1214 [pilon] Processing NODE_8797_length_377_cov_50.667969:1-377 [pilon] NODE_1975_length_1093_cov_1.910494:1-1093 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 64, Coverage: 7, minDepth: 5 [pilon] Confirmed 744 of 1093 bases (68.07%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1975_length_1093_cov_1.910494:1-1093 [pilon] Processing NODE_4672_length_646_cov_22.798095:1-646 [pilon] NODE_1155_length_1415_cov_14.080371:1-1415 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 446, Coverage: 32, minDepth: 8 [pilon] Confirmed 732 of 1415 bases (51.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1155_length_1415_cov_14.080371:1-1415 [pilon] Processing NODE_9803_length_334_cov_7.173709:1-334 [pilon] NODE_14543_length_243_cov_9.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14543_length_243_cov_9.959016:1-243 [pilon] Processing NODE_4028_length_713_cov_3.277027:1-713 [pilon] NODE_6135_length_529_cov_16.139706:1-529 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 146, Coverage: 12, minDepth: 5 [pilon] Confirmed 298 of 529 bases (56.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6135_length_529_cov_16.139706:1-529 [pilon] Processing NODE_3268_length_820_cov_12.153076:1-820 [pilon] NODE_15081_length_233_cov_17.723214:1-233 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 233 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15081_length_233_cov_17.723214:1-233 [pilon] Processing NODE_6418_length_510_cov_0.529563:1-510 [pilon] NODE_7888_length_423_cov_22.142384:1-423 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 140, Coverage: 26, minDepth: 7 [pilon] Confirmed 327 of 423 bases (77.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7888_length_423_cov_22.142384:1-423 [pilon] Processing NODE_1431_length_1288_cov_2.616967:1-1288 [pilon] NODE_1216_length_1384_cov_1.898654:1-1384 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 67, Coverage: 6, minDepth: 5 [pilon] Confirmed 764 of 1384 bases (55.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1216_length_1384_cov_1.898654:1-1384 [pilon] Processing NODE_14597_length_243_cov_9.418033:1-243 [pilon] NODE_12424_length_243_cov_30.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12424_length_243_cov_30.418033:1-243 [pilon] Processing NODE_1659_length_1197_cov_6.118959:1-1197 [pilon] NODE_6918_length_476_cov_26.419718:1-476 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 222, Coverage: 29, minDepth: 7 [pilon] Confirmed 436 of 476 bases (91.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6918_length_476_cov_26.419718:1-476 [pilon] Processing NODE_3257_length_822_cov_24.312411:1-822 [pilon] NODE_12826_length_243_cov_24.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12826_length_243_cov_24.786885:1-243 [pilon] Processing NODE_757_length_1663_cov_26.064851:1-1663 [pilon] NODE_893_length_1564_cov_20.727651:1-1564 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 679, Coverage: 56, minDepth: 14 [pilon] Confirmed 1273 of 1564 bases (81.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_893_length_1564_cov_20.727651:1-1564 [pilon] Processing NODE_166_length_2643_cov_16.902062:1-2643 [pilon] NODE_9836_length_333_cov_12.801887:1-333 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 333 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9836_length_333_cov_12.801887:1-333 [pilon] Processing NODE_177_length_2573_cov_13.535481:1-2573 [pilon] NODE_10650_length_300_cov_11.206704:1-300 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 42, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10650_length_300_cov_11.206704:1-300 [pilon] Processing NODE_4808_length_634_cov_2.255361:1-634 [pilon] NODE_14719_length_243_cov_8.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14719_length_243_cov_8.442623:1-243 [pilon] Processing NODE_15140_length_197_cov_6.276316:1-197 [pilon] NODE_6325_length_515_cov_17.609137:1-515 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 169, Coverage: 19, minDepth: 5 [pilon] Confirmed 356 of 515 bases (69.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6325_length_515_cov_17.609137:1-515 [pilon] Processing NODE_1141_length_1422_cov_29.647194:1-1422 [pilon] NODE_4267_length_685_cov_2.955674:1-685 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 66, Coverage: 9, minDepth: 5 [pilon] Confirmed 522 of 685 bases (76.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4267_length_685_cov_2.955674:1-685 [pilon] Processing NODE_6335_length_515_cov_1.294416:1-515 [pilon] NODE_1143_length_1422_cov_13.245196:1-1422 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 449, Coverage: 30, minDepth: 8 [pilon] Confirmed 1070 of 1422 bases (75.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1143_length_1422_cov_13.245196:1-1422 [pilon] Processing NODE_11453_length_265_cov_1.104167:1-265 [pilon] NODE_5550_length_574_cov_1.529801:1-574 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 24, Coverage: 4, minDepth: 5 [pilon] Confirmed 275 of 574 bases (47.91%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5550_length_574_cov_1.529801:1-574 [pilon] Processing NODE_14801_length_243_cov_7.696721:1-243 [pilon] NODE_10393_length_309_cov_16.659574:1-309 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 83, Coverage: 7, minDepth: 5 [pilon] Confirmed 191 of 309 bases (61.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10393_length_309_cov_16.659574:1-309 [pilon] NODE_14042_length_243_cov_13.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_15236_length_138_cov_1.117647:1-138 [pilon] Finished processing NODE_14042_length_243_cov_13.901639:1-243 [pilon] Processing NODE_11684_length_257_cov_11.000000:1-257 [pilon] NODE_1474_length_1273_cov_2.294271:1-1273 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 879 of 1273 bases (69.05%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1474_length_1273_cov_2.294271:1-1273 [pilon] Processing NODE_6860_length_480_cov_14.389972:1-480 [pilon] NODE_305_length_2235_cov_9.442289:1-2235 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 534, Coverage: 29, minDepth: 7 [pilon] Confirmed 1646 of 2235 bases (73.65%) [pilon] Corrected 1 snps; 1 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_305_length_2235_cov_9.442289:1-2235 [pilon] Processing NODE_3606_length_767_cov_33.309598:1-767 [pilon] NODE_2376_length_995_cov_33.667048:1-995 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 654, Coverage: 74, minDepth: 19 [pilon] Confirmed 842 of 995 bases (84.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2376_length_995_cov_33.667048:1-995 [pilon] NODE_4196_length_694_cov_16.441536:1-694 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 262, Coverage: 32, minDepth: 8 [pilon] Confirmed 562 of 694 bases (80.98%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4196_length_694_cov_16.441536:1-694 [pilon] Processing NODE_13383_length_243_cov_19.516393:1-243 [pilon] NODE_9248_length_356_cov_11.795745:1-356 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 51, Coverage: 7, minDepth: 5 [pilon] Confirmed 201 of 356 bases (56.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9248_length_356_cov_11.795745:1-356 [pilon] Processing NODE_11796_length_253_cov_8.204545:1-253 [pilon] NODE_13530_length_243_cov_18.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13530_length_243_cov_18.073770:1-243 [pilon] Processing NODE_8688_length_383_cov_15.171756:1-383 [pilon] NODE_3985_length_716_cov_16.578151:1-716 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 242, Coverage: 30, minDepth: 8 [pilon] Confirmed 556 of 716 bases (77.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3985_length_716_cov_16.578151:1-716 [pilon] Processing NODE_10457_length_306_cov_16.243243:1-306 [pilon] NODE_5002_length_618_cov_20.092555:1-618 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 254, Coverage: 32, minDepth: 8 [pilon] Confirmed 497 of 618 bases (80.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5002_length_618_cov_20.092555:1-618 [pilon] Processing NODE_10795_length_294_cov_6.919075:1-294 [pilon] NODE_9803_length_334_cov_7.173709:1-334 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 43, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 334 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9803_length_334_cov_7.173709:1-334 [pilon] Processing NODE_6140_length_529_cov_1.438725:1-529 [pilon] NODE_4672_length_646_cov_22.798095:1-646 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 282, Coverage: 34, minDepth: 9 [pilon] Confirmed 580 of 646 bases (89.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4672_length_646_cov_22.798095:1-646 [pilon] Processing NODE_7255_length_457_cov_0.958333:1-457 [pilon] NODE_8797_length_377_cov_50.667969:1-377 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 279, Coverage: 48, minDepth: 12 [pilon] Confirmed 321 of 377 bases (85.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8797_length_377_cov_50.667969:1-377 [pilon] Processing NODE_13576_length_243_cov_17.704918:1-243 [pilon] NODE_4028_length_713_cov_3.277027:1-713 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 50, Coverage: 9, minDepth: 5 [pilon] Confirmed 462 of 713 bases (64.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4028_length_713_cov_3.277027:1-713 [pilon] Processing NODE_7693_length_432_cov_37.479100:1-432 [pilon] NODE_3268_length_820_cov_12.153076:1-820 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 200, Coverage: 26, minDepth: 7 [pilon] Confirmed 657 of 820 bases (80.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3268_length_820_cov_12.153076:1-820 [pilon] Processing NODE_2465_length_974_cov_38.135991:1-974 [pilon] NODE_757_length_1663_cov_26.064851:1-1663 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 933, Coverage: 69, minDepth: 17 [pilon] Confirmed 1434 of 1663 bases (86.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_757_length_1663_cov_26.064851:1-1663 [pilon] Processing NODE_8422_length_398_cov_29.321300:1-398 [pilon] NODE_6418_length_510_cov_0.529563:1-510 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 510 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6418_length_510_cov_0.529563:1-510 [pilon] Processing NODE_925_length_1543_cov_4.144866:1-1543 [pilon] NODE_166_length_2643_cov_16.902062:1-2643 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 943, Coverage: 46, minDepth: 12 [pilon] Confirmed 2208 of 2643 bases (83.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_166_length_2643_cov_16.902062:1-2643 [pilon] Processing NODE_2082_length_1063_cov_26.011677:1-1063 [pilon] NODE_1659_length_1197_cov_6.118959:1-1197 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 155, Coverage: 16, minDepth: 5 [pilon] Confirmed 893 of 1197 bases (74.60%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1659_length_1197_cov_6.118959:1-1197 [pilon] Processing NODE_5495_length_578_cov_2.973742:1-578 [pilon] NODE_1431_length_1288_cov_2.616967:1-1288 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 81, Coverage: 8, minDepth: 5 [pilon] Confirmed 666 of 1288 bases (51.71%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1431_length_1288_cov_2.616967:1-1288 [pilon] Processing NODE_9430_length_348_cov_30.299559:1-348 [pilon] NODE_14597_length_243_cov_9.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14597_length_243_cov_9.418033:1-243 [pilon] Processing NODE_14723_length_243_cov_8.393443:1-243 [pilon] NODE_3257_length_822_cov_24.312411:1-822 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 384, Coverage: 31, minDepth: 8 [pilon] Confirmed 634 of 822 bases (77.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3257_length_822_cov_24.312411:1-822 [pilon] Processing NODE_7519_length_442_cov_21.794393:1-442 [pilon] NODE_15236_length_138_cov_1.117647:1-138 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 138 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15236_length_138_cov_1.117647:1-138 [pilon] Processing NODE_14555_length_243_cov_9.868852:1-243 [pilon] NODE_4808_length_634_cov_2.255361:1-634 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 422 of 634 bases (66.56%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4808_length_634_cov_2.255361:1-634 [pilon] Processing NODE_4483_length_663_cov_13.656827:1-663 [pilon] NODE_177_length_2573_cov_13.535481:1-2573 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 837, Coverage: 32, minDepth: 8 [pilon] Confirmed 2074 of 2573 bases (80.61%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_177_length_2573_cov_13.535481:1-2573 [pilon] Processing NODE_4002_length_715_cov_19.353535:1-715 [pilon] NODE_15140_length_197_cov_6.276316:1-197 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 197 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15140_length_197_cov_6.276316:1-197 [pilon] Processing NODE_5719_length_562_cov_1.267574:1-562 [pilon] NODE_6335_length_515_cov_1.294416:1-515 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 108 of 515 bases (20.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6335_length_515_cov_1.294416:1-515 [pilon] Processing NODE_4355_length_675_cov_13.389892:1-675 [pilon] NODE_11684_length_257_cov_11.000000:1-257 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 33, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 257 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11684_length_257_cov_11.000000:1-257 [pilon] Processing NODE_4223_length_691_cov_16.540351:1-691 [pilon] NODE_6860_length_480_cov_14.389972:1-480 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 117, Coverage: 16, minDepth: 5 [pilon] Confirmed 306 of 480 bases (63.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6860_length_480_cov_14.389972:1-480 [pilon] Processing NODE_1389_length_1300_cov_26.424088:1-1300 [pilon] NODE_3606_length_767_cov_33.309598:1-767 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 504, Coverage: 67, minDepth: 17 [pilon] Confirmed 661 of 767 bases (86.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3606_length_767_cov_33.309598:1-767 [pilon] Processing NODE_8174_length_410_cov_0.664360:1-410 [pilon] NODE_11453_length_265_cov_1.104167:1-265 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 265 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11453_length_265_cov_1.104167:1-265 [pilon] Processing NODE_10110_length_321_cov_15.635000:1-321 [pilon] NODE_1141_length_1422_cov_29.647194:1-1422 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 855, Coverage: 68, minDepth: 17 [pilon] Confirmed 1311 of 1422 bases (92.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1141_length_1422_cov_29.647194:1-1422 [pilon] Processing NODE_9564_length_343_cov_12.873874:1-343 [pilon] NODE_14801_length_243_cov_7.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14801_length_243_cov_7.696721:1-243 [pilon] Processing NODE_6216_length_523_cov_16.614428:1-523 [pilon] NODE_7255_length_457_cov_0.958333:1-457 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 40 of 457 bases (8.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7255_length_457_cov_0.958333:1-457 [pilon] Processing NODE_10165_length_318_cov_22.959391:1-318 [pilon] NODE_10457_length_306_cov_16.243243:1-306 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 60, Coverage: 5, minDepth: 5 [pilon] Confirmed 165 of 306 bases (53.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10457_length_306_cov_16.243243:1-306 [pilon] Processing NODE_9520_length_345_cov_15.915179:1-345 [pilon] NODE_11796_length_253_cov_8.204545:1-253 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 253 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11796_length_253_cov_8.204545:1-253 [pilon] Processing NODE_13715_length_243_cov_16.286885:1-243 [pilon] NODE_13383_length_243_cov_19.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13383_length_243_cov_19.516393:1-243 [pilon] Processing NODE_8616_length_387_cov_22.770677:1-387 [pilon] NODE_8688_length_383_cov_15.171756:1-383 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 92, Coverage: 8, minDepth: 5 [pilon] Confirmed 239 of 383 bases (62.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8688_length_383_cov_15.171756:1-383 [pilon] Processing NODE_4572_length_656_cov_2.138318:1-656 [pilon] NODE_8422_length_398_cov_29.321300:1-398 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 188, Coverage: 22, minDepth: 6 [pilon] Confirmed 246 of 398 bases (61.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8422_length_398_cov_29.321300:1-398 [pilon] Processing NODE_7666_length_434_cov_30.942492:1-434 [pilon] NODE_10795_length_294_cov_6.919075:1-294 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 24, Coverage: 2, minDepth: 5 [pilon] Confirmed 38 of 294 bases (12.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10795_length_294_cov_6.919075:1-294 [pilon] Processing NODE_13706_length_243_cov_16.377049:1-243 [pilon] NODE_6140_length_529_cov_1.438725:1-529 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 265 of 529 bases (50.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6140_length_529_cov_1.438725:1-529 [pilon] Processing NODE_10062_length_323_cov_11.282178:1-323 [pilon] NODE_13576_length_243_cov_17.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13576_length_243_cov_17.704918:1-243 [pilon] Processing NODE_3494_length_784_cov_35.037707:1-784 [pilon] NODE_7693_length_432_cov_37.479100:1-432 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 259, Coverage: 50, minDepth: 13 [pilon] Confirmed 383 of 432 bases (88.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7693_length_432_cov_37.479100:1-432 [pilon] Processing NODE_6963_length_474_cov_1.096317:1-474 [pilon] NODE_2082_length_1063_cov_26.011677:1-1063 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 609, Coverage: 60, minDepth: 15 [pilon] Confirmed 973 of 1063 bases (91.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2082_length_1063_cov_26.011677:1-1063 [pilon] Processing NODE_5139_length_606_cov_38.404124:1-606 [pilon] NODE_925_length_1543_cov_4.144866:1-1543 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 154, Coverage: 13, minDepth: 5 [pilon] Confirmed 1154 of 1543 bases (74.79%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_925_length_1543_cov_4.144866:1-1543 [pilon] Processing NODE_11658_length_258_cov_12.671533:1-258 [pilon] NODE_9430_length_348_cov_30.299559:1-348 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 126, Coverage: 5, minDepth: 5 [pilon] Confirmed 145 of 348 bases (41.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9430_length_348_cov_30.299559:1-348 [pilon] Processing NODE_2917_length_889_cov_28.289062:1-889 [pilon] NODE_5495_length_578_cov_2.973742:1-578 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 37, Coverage: 8, minDepth: 5 [pilon] Confirmed 318 of 578 bases (55.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5495_length_578_cov_2.973742:1-578 [pilon] Processing NODE_7657_length_435_cov_9.076433:1-435 [pilon] NODE_2465_length_974_cov_38.135991:1-974 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 810, Coverage: 67, minDepth: 17 [pilon] Confirmed 692 of 974 bases (71.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2465_length_974_cov_38.135991:1-974 [pilon] Processing NODE_10362_length_310_cov_24.693122:1-310 [pilon] NODE_8174_length_410_cov_0.664360:1-410 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 410 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8174_length_410_cov_0.664360:1-410 [pilon] Processing NODE_14060_length_243_cov_13.762295:1-243 [pilon] NODE_14723_length_243_cov_8.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14723_length_243_cov_8.393443:1-243 [pilon] Processing NODE_1349_length_1320_cov_13.269391:1-1320 [pilon] NODE_14555_length_243_cov_9.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14555_length_243_cov_9.868852:1-243 [pilon] Processing NODE_8589_length_389_cov_15.320896:1-389 [pilon] NODE_7519_length_442_cov_21.794393:1-442 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 137, Coverage: 9, minDepth: 5 [pilon] Confirmed 245 of 442 bases (55.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7519_length_442_cov_21.794393:1-442 [pilon] Processing NODE_6313_length_516_cov_41.460759:1-516 [pilon] NODE_9520_length_345_cov_15.915179:1-345 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 82, Coverage: 17, minDepth: 5 [pilon] Confirmed 299 of 345 bases (86.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9520_length_345_cov_15.915179:1-345 [pilon] NODE_4483_length_663_cov_13.656827:1-663 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 171, Coverage: 25, minDepth: 6 [pilon] Confirmed 441 of 663 bases (66.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4483_length_663_cov_13.656827:1-663 [pilon] Processing NODE_8187_length_409_cov_1.784722:1-409 [pilon] Processing NODE_4440_length_667_cov_2.492674:1-667 [pilon] NODE_10165_length_318_cov_22.959391:1-318 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 89, Coverage: 5, minDepth: 5 [pilon] Confirmed 151 of 318 bases (47.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10165_length_318_cov_22.959391:1-318 [pilon] Processing NODE_3925_length_724_cov_21.200663:1-724 [pilon] NODE_4002_length_715_cov_19.353535:1-715 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 271, Coverage: 32, minDepth: 8 [pilon] Confirmed 629 of 715 bases (87.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4002_length_715_cov_19.353535:1-715 [pilon] Processing NODE_3032_length_867_cov_23.056300:1-867 [pilon] NODE_9564_length_343_cov_12.873874:1-343 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 69, Coverage: 8, minDepth: 5 [pilon] Confirmed 238 of 343 bases (69.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9564_length_343_cov_12.873874:1-343 [pilon] Processing NODE_8976_length_367_cov_59.650407:1-367 [pilon] NODE_5719_length_562_cov_1.267574:1-562 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 272 of 562 bases (48.40%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5719_length_562_cov_1.267574:1-562 [pilon] Processing NODE_1789_length_1150_cov_28.561710:1-1150 [pilon] NODE_7666_length_434_cov_30.942492:1-434 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 227, Coverage: 31, minDepth: 8 [pilon] Confirmed 387 of 434 bases (89.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7666_length_434_cov_30.942492:1-434 [pilon] Processing NODE_13316_length_243_cov_20.114754:1-243 [pilon] NODE_4223_length_691_cov_16.540351:1-691 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 268, Coverage: 16, minDepth: 5 [pilon] Confirmed 434 of 691 bases (62.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4223_length_691_cov_16.540351:1-691 [pilon] Processing NODE_11722_length_255_cov_24.462687:1-255 [pilon] NODE_13715_length_243_cov_16.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13715_length_243_cov_16.286885:1-243 [pilon] Processing NODE_13362_length_243_cov_19.729508:1-243 [pilon] NODE_4355_length_675_cov_13.389892:1-675 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 181, Coverage: 16, minDepth: 5 [pilon] Confirmed 596 of 675 bases (88.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4355_length_675_cov_13.389892:1-675 [pilon] Processing NODE_6018_length_539_cov_25.031100:1-539 [pilon] NODE_1389_length_1300_cov_26.424088:1-1300 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 833, Coverage: 43, minDepth: 11 [pilon] Confirmed 1037 of 1300 bases (79.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1389_length_1300_cov_26.424088:1-1300 [pilon] Processing NODE_2842_length_903_cov_32.681586:1-903 [pilon] NODE_6216_length_523_cov_16.614428:1-523 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 150, Coverage: 25, minDepth: 6 [pilon] Confirmed 378 of 523 bases (72.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6216_length_523_cov_16.614428:1-523 [pilon] Processing NODE_8593_length_389_cov_12.365672:1-389 [pilon] NODE_10110_length_321_cov_15.635000:1-321 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 63, Coverage: 3, minDepth: 5 [pilon] Confirmed 123 of 321 bases (38.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10110_length_321_cov_15.635000:1-321 [pilon] Processing NODE_12519_length_243_cov_28.803279:1-243 [pilon] NODE_8616_length_387_cov_22.770677:1-387 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 138, Coverage: 16, minDepth: 5 [pilon] Confirmed 270 of 387 bases (69.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8616_length_387_cov_22.770677:1-387 [pilon] Processing NODE_13234_length_243_cov_20.803279:1-243 [pilon] NODE_4572_length_656_cov_2.138318:1-656 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 284 of 656 bases (43.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4572_length_656_cov_2.138318:1-656 [pilon] Processing NODE_8441_length_397_cov_21.550725:1-397 [pilon] NODE_13706_length_243_cov_16.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13706_length_243_cov_16.377049:1-243 [pilon] Processing NODE_164_length_2669_cov_11.443878:1-2669 [pilon] NODE_3494_length_784_cov_35.037707:1-784 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 507, Coverage: 57, minDepth: 14 [pilon] Confirmed 738 of 784 bases (94.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3494_length_784_cov_35.037707:1-784 [pilon] Processing NODE_7982_length_419_cov_10.057047:1-419 [pilon] NODE_10062_length_323_cov_11.282178:1-323 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 53, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 323 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10062_length_323_cov_11.282178:1-323 [pilon] Processing NODE_13399_length_243_cov_19.311475:1-243 [pilon] NODE_6963_length_474_cov_1.096317:1-474 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 138 of 474 bases (29.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6963_length_474_cov_1.096317:1-474 [pilon] Processing NODE_12681_length_243_cov_26.409836:1-243 [pilon] NODE_11658_length_258_cov_12.671533:1-258 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 184 of 258 bases (71.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11658_length_258_cov_12.671533:1-258 [pilon] Processing NODE_12917_length_243_cov_23.909836:1-243 [pilon] NODE_5139_length_606_cov_38.404124:1-606 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 449, Coverage: 47, minDepth: 12 [pilon] Confirmed 382 of 606 bases (63.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5139_length_606_cov_38.404124:1-606 [pilon] Processing NODE_11813_length_252_cov_21.435115:1-252 [pilon] NODE_13316_length_243_cov_20.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13316_length_243_cov_20.114754:1-243 [pilon] Processing NODE_3761_length_746_cov_1.819200:1-746 [pilon] NODE_8976_length_367_cov_59.650407:1-367 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 350, Coverage: 55, minDepth: 14 [pilon] Confirmed 317 of 367 bases (86.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8976_length_367_cov_59.650407:1-367 [pilon] Processing NODE_1517_length_1252_cov_1.392573:1-1252 [pilon] NODE_10362_length_310_cov_24.693122:1-310 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 107, Coverage: 7, minDepth: 5 [pilon] Confirmed 202 of 310 bases (65.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10362_length_310_cov_24.693122:1-310 [pilon] Processing NODE_2594_length_946_cov_23.517576:1-946 [pilon] NODE_7657_length_435_cov_9.076433:1-435 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 435 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7657_length_435_cov_9.076433:1-435 [pilon] Processing NODE_14237_length_243_cov_12.327869:1-243 [pilon] NODE_11722_length_255_cov_24.462687:1-255 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 207 of 255 bases (81.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11722_length_255_cov_24.462687:1-255 [pilon] Processing NODE_5991_length_542_cov_0.641330:1-542 [pilon] NODE_2917_length_889_cov_28.289062:1-889 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 498, Coverage: 60, minDepth: 15 [pilon] Confirmed 746 of 889 bases (83.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2917_length_889_cov_28.289062:1-889 [pilon] Processing NODE_8856_length_374_cov_23.300395:1-374 [pilon] Processing NODE_13387_length_243_cov_19.483607:1-243 [pilon] NODE_14060_length_243_cov_13.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14060_length_243_cov_13.762295:1-243 [pilon] Processing NODE_8471_length_395_cov_46.343066:1-395 [pilon] NODE_6313_length_516_cov_41.460759:1-516 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 387, Coverage: 62, minDepth: 16 [pilon] Confirmed 443 of 516 bases (85.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6313_length_516_cov_41.460759:1-516 [pilon] Processing NODE_3770_length_744_cov_41.467095:1-744 [pilon] NODE_1349_length_1320_cov_13.269391:1-1320 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 404, Coverage: 22, minDepth: 6 [pilon] Confirmed 1191 of 1320 bases (90.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1349_length_1320_cov_13.269391:1-1320 [pilon] Processing NODE_9473_length_347_cov_21.530973:1-347 [pilon] NODE_8589_length_389_cov_15.320896:1-389 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 90, Coverage: 13, minDepth: 5 [pilon] Confirmed 335 of 389 bases (86.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8589_length_389_cov_15.320896:1-389 [pilon] Processing NODE_13799_length_243_cov_15.680328:1-243 [pilon] NODE_8187_length_409_cov_1.784722:1-409 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 17, Coverage: 3, minDepth: 5 [pilon] Confirmed 140 of 409 bases (34.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8187_length_409_cov_1.784722:1-409 [pilon] Processing NODE_8850_length_374_cov_46.529644:1-374 [pilon] NODE_4440_length_667_cov_2.492674:1-667 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 41, Coverage: 8, minDepth: 5 [pilon] Confirmed 407 of 667 bases (61.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4440_length_667_cov_2.492674:1-667 [pilon] Processing NODE_8579_length_389_cov_38.985075:1-389 [pilon] NODE_3032_length_867_cov_23.056300:1-867 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 425, Coverage: 51, minDepth: 13 [pilon] Confirmed 589 of 867 bases (67.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3032_length_867_cov_23.056300:1-867 [pilon] Processing NODE_61_length_3398_cov_12.118401:1-3398 [pilon] NODE_3925_length_724_cov_21.200663:1-724 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 308, Coverage: 39, minDepth: 10 [pilon] Confirmed 587 of 724 bases (81.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3925_length_724_cov_21.200663:1-724 [pilon] Processing NODE_4364_length_674_cov_28.198915:1-674 [pilon] NODE_1789_length_1150_cov_28.561710:1-1150 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 586, Coverage: 43, minDepth: 11 [pilon] Confirmed 889 of 1150 bases (77.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1789_length_1150_cov_28.561710:1-1150 [pilon] Processing NODE_3488_length_787_cov_2.195195:1-787 [pilon] NODE_7982_length_419_cov_10.057047:1-419 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 63, Coverage: 11, minDepth: 5 [pilon] Confirmed 261 of 419 bases (62.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7982_length_419_cov_10.057047:1-419 [pilon] Processing NODE_5413_length_583_cov_8.435065:1-583 [pilon] NODE_13362_length_243_cov_19.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13362_length_243_cov_19.729508:1-243 [pilon] Processing NODE_1493_length_1263_cov_7.321366:1-1263 [pilon] NODE_6018_length_539_cov_25.031100:1-539 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 253, Coverage: 10, minDepth: 5 [pilon] Confirmed 290 of 539 bases (53.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6018_length_539_cov_25.031100:1-539 [pilon] Processing NODE_4453_length_666_cov_1.422018:1-666 [pilon] NODE_2842_length_903_cov_32.681586:1-903 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 564, Coverage: 67, minDepth: 17 [pilon] Confirmed 788 of 903 bases (87.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2842_length_903_cov_32.681586:1-903 [pilon] Processing NODE_2159_length_1042_cov_25.093377:1-1042 [pilon] NODE_8593_length_389_cov_12.365672:1-389 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 65, Coverage: 10, minDepth: 5 [pilon] Confirmed 220 of 389 bases (56.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8593_length_389_cov_12.365672:1-389 [pilon] Processing NODE_2185_length_1038_cov_14.475463:1-1038 [pilon] NODE_12519_length_243_cov_28.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12519_length_243_cov_28.803279:1-243 [pilon] Processing NODE_3928_length_724_cov_11.021559:1-724 [pilon] NODE_8441_length_397_cov_21.550725:1-397 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 136, Coverage: 15, minDepth: 5 [pilon] Confirmed 250 of 397 bases (62.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8441_length_397_cov_21.550725:1-397 [pilon] Processing NODE_13369_length_243_cov_19.655738:1-243 [pilon] NODE_3761_length_746_cov_1.819200:1-746 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 43, Coverage: 7, minDepth: 5 [pilon] Confirmed 384 of 746 bases (51.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_13234_length_243_cov_20.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3761_length_746_cov_1.819200:1-746 [pilon] Finished processing NODE_13234_length_243_cov_20.803279:1-243 [pilon] Processing NODE_3244_length_825_cov_23.132102:1-825 [pilon] Processing NODE_395_length_2055_cov_29.282834:1-2055 [pilon] NODE_164_length_2669_cov_11.443878:1-2669 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 695, Coverage: 27, minDepth: 7 [pilon] Confirmed 2385 of 2669 bases (89.36%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_164_length_2669_cov_11.443878:1-2669 [pilon] Processing NODE_649_length_1749_cov_5.258600:1-1749 [pilon] NODE_13399_length_243_cov_19.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13399_length_243_cov_19.311475:1-243 [pilon] Processing NODE_15253_length_125_cov_128.000000:1-125 [pilon] NODE_1517_length_1252_cov_1.392573:1-1252 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 53, Coverage: 5, minDepth: 5 [pilon] Confirmed 592 of 1252 bases (47.28%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1517_length_1252_cov_1.392573:1-1252 [pilon] Processing NODE_2636_length_940_cov_32.609280:1-940 [pilon] NODE_13387_length_243_cov_19.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13387_length_243_cov_19.483607:1-243 [pilon] Processing NODE_10333_length_312_cov_14.837696:1-312 [pilon] NODE_12681_length_243_cov_26.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12681_length_243_cov_26.409836:1-243 [pilon] Processing NODE_10225_length_316_cov_2.158974:1-316 [pilon] NODE_12917_length_243_cov_23.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12917_length_243_cov_23.909836:1-243 [pilon] Processing NODE_4704_length_643_cov_2.513410:1-643 [pilon] NODE_11813_length_252_cov_21.435115:1-252 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 55, Coverage: 6, minDepth: 5 [pilon] Confirmed 146 of 252 bases (57.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11813_length_252_cov_21.435115:1-252 [pilon] Processing NODE_13225_length_243_cov_20.885246:1-243 [pilon] NODE_14237_length_243_cov_12.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14237_length_243_cov_12.327869:1-243 [pilon] Processing NODE_11042_length_282_cov_10.391304:1-282 [pilon] NODE_5991_length_542_cov_0.641330:1-542 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 55 of 542 bases (10.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5991_length_542_cov_0.641330:1-542 [pilon] Processing NODE_12408_length_243_cov_30.786885:1-243 [pilon] NODE_9473_length_347_cov_21.530973:1-347 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 109, Coverage: 12, minDepth: 5 [pilon] Confirmed 229 of 347 bases (65.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9473_length_347_cov_21.530973:1-347 [pilon] Processing NODE_9466_length_348_cov_1.612335:1-348 [pilon] NODE_8856_length_374_cov_23.300395:1-374 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 89, Coverage: 15, minDepth: 5 [pilon] Confirmed 243 of 374 bases (64.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8856_length_374_cov_23.300395:1-374 [pilon] Processing NODE_2858_length_900_cov_18.880616:1-900 [pilon] NODE_8471_length_395_cov_46.343066:1-395 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 314, Coverage: 50, minDepth: 13 [pilon] Confirmed 354 of 395 bases (89.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8471_length_395_cov_46.343066:1-395 [pilon] Processing NODE_416_length_2021_cov_18.702632:1-2021 [pilon] NODE_2594_length_946_cov_23.517576:1-946 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 462, Coverage: 41, minDepth: 10 [pilon] Confirmed 686 of 946 bases (72.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2594_length_946_cov_23.517576:1-946 [pilon] Processing NODE_7810_length_426_cov_35.681967:1-426 [pilon] NODE_3770_length_744_cov_41.467095:1-744 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 608, Coverage: 85, minDepth: 21 [pilon] Confirmed 671 of 744 bases (90.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3770_length_744_cov_41.467095:1-744 [pilon] Processing NODE_10485_length_305_cov_55.505435:1-305 [pilon] NODE_13799_length_243_cov_15.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13799_length_243_cov_15.680328:1-243 [pilon] Processing NODE_5821_length_554_cov_3.678984:1-554 [pilon] NODE_8850_length_374_cov_46.529644:1-374 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 258, Coverage: 42, minDepth: 11 [pilon] Confirmed 328 of 374 bases (87.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8850_length_374_cov_46.529644:1-374 [pilon] Processing NODE_4383_length_673_cov_2.001812:1-673 [pilon] NODE_8579_length_389_cov_38.985075:1-389 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 241, Coverage: 28, minDepth: 7 [pilon] Confirmed 333 of 389 bases (85.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8579_length_389_cov_38.985075:1-389 [pilon] Processing NODE_3204_length_832_cov_19.461322:1-832 [pilon] NODE_3488_length_787_cov_2.195195:1-787 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 47, Coverage: 8, minDepth: 5 [pilon] Confirmed 487 of 787 bases (61.88%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3488_length_787_cov_2.195195:1-787 [pilon] Processing NODE_10085_length_321_cov_28.250000:1-321 [pilon] NODE_61_length_3398_cov_12.118401:1-3398 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 905, Coverage: 34, minDepth: 9 [pilon] Confirmed 2518 of 3398 bases (74.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_61_length_3398_cov_12.118401:1-3398 [pilon] Processing NODE_3616_length_767_cov_1.317337:1-767 [pilon] NODE_4364_length_674_cov_28.198915:1-674 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 456, Coverage: 39, minDepth: 10 [pilon] Confirmed 411 of 674 bases (60.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4364_length_674_cov_28.198915:1-674 [pilon] Processing NODE_1218_length_1381_cov_6.291270:1-1381 [pilon] NODE_3244_length_825_cov_23.132102:1-825 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 368, Coverage: 35, minDepth: 9 [pilon] Confirmed 633 of 825 bases (76.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3244_length_825_cov_23.132102:1-825 [pilon] Processing NODE_910_length_1550_cov_20.430371:1-1550 [pilon] NODE_5413_length_583_cov_8.435065:1-583 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 107, Coverage: 8, minDepth: 5 [pilon] Confirmed 323 of 583 bases (55.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5413_length_583_cov_8.435065:1-583 [pilon] Processing NODE_5029_length_617_cov_2.066532:1-617 [pilon] NODE_1493_length_1263_cov_7.321366:1-1263 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 236, Coverage: 23, minDepth: 6 [pilon] Confirmed 918 of 1263 bases (72.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1493_length_1263_cov_7.321366:1-1263 [pilon] Processing NODE_7420_length_447_cov_10.889571:1-447 [pilon] NODE_2159_length_1042_cov_25.093377:1-1042 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 402, Coverage: 25, minDepth: 6 [pilon] Confirmed 807 of 1042 bases (77.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2159_length_1042_cov_25.093377:1-1042 [pilon] Processing NODE_14564_length_243_cov_9.795082:1-243 [pilon] NODE_2185_length_1038_cov_14.475463:1-1038 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 312, Coverage: 35, minDepth: 9 [pilon] Confirmed 635 of 1038 bases (61.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2185_length_1038_cov_14.475463:1-1038 [pilon] Processing NODE_1060_length_1460_cov_10.180732:1-1460 [pilon] NODE_4453_length_666_cov_1.422018:1-666 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 222 of 666 bases (33.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4453_length_666_cov_1.422018:1-666 [pilon] Processing NODE_8626_length_387_cov_16.191729:1-387 [pilon] NODE_2636_length_940_cov_32.609280:1-940 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 657, Coverage: 45, minDepth: 11 [pilon] Confirmed 706 of 940 bases (75.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2636_length_940_cov_32.609280:1-940 [pilon] Processing NODE_3405_length_798_cov_2.568685:1-798 [pilon] NODE_10333_length_312_cov_14.837696:1-312 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 57, Coverage: 9, minDepth: 5 [pilon] Confirmed 226 of 312 bases (72.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10333_length_312_cov_14.837696:1-312 [pilon] Processing NODE_13427_length_243_cov_19.040984:1-243 [pilon] NODE_13369_length_243_cov_19.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13369_length_243_cov_19.655738:1-243 [pilon] Processing NODE_8937_length_369_cov_19.370968:1-369 [pilon] NODE_3928_length_724_cov_11.021559:1-724 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 162, Coverage: 29, minDepth: 7 [pilon] Confirmed 570 of 724 bases (78.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3928_length_724_cov_11.021559:1-724 [pilon] Processing NODE_15010_length_243_cov_5.319672:1-243 [pilon] NODE_15253_length_125_cov_128.000000:1-125 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 125 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15253_length_125_cov_128.000000:1-125 [pilon] Processing NODE_9222_length_357_cov_12.389831:1-357 [pilon] NODE_649_length_1749_cov_5.258600:1-1749 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 202, Coverage: 15, minDepth: 5 [pilon] Confirmed 1493 of 1749 bases (85.36%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_649_length_1749_cov_5.258600:1-1749 [pilon] Processing NODE_8317_length_403_cov_58.911348:1-403 [pilon] NODE_10225_length_316_cov_2.158974:1-316 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 55 of 316 bases (17.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10225_length_316_cov_2.158974:1-316 [pilon] Processing NODE_10753_length_295_cov_16.971264:1-295 [pilon] NODE_10485_length_305_cov_55.505435:1-305 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 229, Coverage: 31, minDepth: 8 [pilon] Confirmed 259 of 305 bases (84.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10485_length_305_cov_55.505435:1-305 [pilon] Processing NODE_2727_length_923_cov_1.771820:1-923 [pilon] NODE_395_length_2055_cov_29.282834:1-2055 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 1285, Coverage: 52, minDepth: 13 [pilon] Confirmed 1718 of 2055 bases (83.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_395_length_2055_cov_29.282834:1-2055 [pilon] Processing NODE_10700_length_297_cov_28.426136:1-297 [pilon] NODE_4704_length_643_cov_2.513410:1-643 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 49, Coverage: 10, minDepth: 5 [pilon] Confirmed 443 of 643 bases (68.90%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4704_length_643_cov_2.513410:1-643 [pilon] Processing NODE_6583_length_498_cov_10.352785:1-498 [pilon] NODE_10085_length_321_cov_28.250000:1-321 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 131, Coverage: 7, minDepth: 5 [pilon] Confirmed 176 of 321 bases (54.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10085_length_321_cov_28.250000:1-321 [pilon] Processing NODE_3267_length_820_cov_14.653791:1-820 [pilon] NODE_12408_length_243_cov_30.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12408_length_243_cov_30.786885:1-243 [pilon] Processing NODE_2780_length_913_cov_0.895202:1-913 [pilon] NODE_13225_length_243_cov_20.885246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13225_length_243_cov_20.885246:1-243 [pilon] Processing NODE_11802_length_252_cov_29.763359:1-252 [pilon] NODE_9466_length_348_cov_1.612335:1-348 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 125 of 348 bases (35.92%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9466_length_348_cov_1.612335:1-348 [pilon] Processing NODE_9490_length_346_cov_8.933333:1-346 [pilon] NODE_11042_length_282_cov_10.391304:1-282 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 40, Coverage: 3, minDepth: 5 [pilon] Confirmed 54 of 282 bases (19.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11042_length_282_cov_10.391304:1-282 [pilon] Processing NODE_544_length_1864_cov_14.820425:1-1864 [pilon] NODE_910_length_1550_cov_20.430371:1-1550 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 769, Coverage: 57, minDepth: 14 [pilon] Confirmed 1296 of 1550 bases (83.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_910_length_1550_cov_20.430371:1-1550 [pilon] Processing NODE_9485_length_346_cov_28.222222:1-346 [pilon] NODE_2858_length_900_cov_18.880616:1-900 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 332, Coverage: 44, minDepth: 11 [pilon] Confirmed 747 of 900 bases (83.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2858_length_900_cov_18.880616:1-900 [pilon] Processing NODE_9009_length_366_cov_14.342857:1-366 [pilon] NODE_7810_length_426_cov_35.681967:1-426 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 253, Coverage: 29, minDepth: 7 [pilon] Confirmed 288 of 426 bases (67.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7810_length_426_cov_35.681967:1-426 [pilon] Processing NODE_10709_length_297_cov_21.198864:1-297 [pilon] NODE_416_length_2021_cov_18.702632:1-2021 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 931, Coverage: 52, minDepth: 13 [pilon] Confirmed 1682 of 2021 bases (83.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_416_length_2021_cov_18.702632:1-2021 [pilon] Processing NODE_9452_length_348_cov_12.550661:1-348 [pilon] NODE_4383_length_673_cov_2.001812:1-673 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 37, Coverage: 7, minDepth: 5 [pilon] Confirmed 369 of 673 bases (54.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4383_length_673_cov_2.001812:1-673 [pilon] Processing NODE_894_length_1564_cov_20.532225:1-1564 [pilon] NODE_5821_length_554_cov_3.678984:1-554 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 36, Coverage: 8, minDepth: 5 [pilon] Confirmed 351 of 554 bases (63.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5821_length_554_cov_3.678984:1-554 [pilon] Processing NODE_6245_length_521_cov_24.405000:1-521 [pilon] NODE_3616_length_767_cov_1.317337:1-767 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 22, Coverage: 3, minDepth: 5 [pilon] Confirmed 230 of 767 bases (29.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3616_length_767_cov_1.317337:1-767 [pilon] Processing NODE_12689_length_243_cov_26.377049:1-243 [pilon] NODE_3204_length_832_cov_19.461322:1-832 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 290, Coverage: 34, minDepth: 9 [pilon] Confirmed 649 of 832 bases (78.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3204_length_832_cov_19.461322:1-832 [pilon] Processing NODE_14487_length_243_cov_10.368852:1-243 [pilon] NODE_1218_length_1381_cov_6.291270:1-1381 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 241, Coverage: 16, minDepth: 5 [pilon] Confirmed 1254 of 1381 bases (90.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1218_length_1381_cov_6.291270:1-1381 [pilon] Processing NODE_3277_length_819_cov_2.107450:1-819 [pilon] NODE_7420_length_447_cov_10.889571:1-447 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 79, Coverage: 10, minDepth: 5 [pilon] Confirmed 240 of 447 bases (53.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7420_length_447_cov_10.889571:1-447 [pilon] Processing NODE_12398_length_243_cov_31.032787:1-243 [pilon] NODE_5029_length_617_cov_2.066532:1-617 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 33, Coverage: 7, minDepth: 5 [pilon] Confirmed 449 of 617 bases (72.77%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5029_length_617_cov_2.066532:1-617 [pilon] Processing NODE_2694_length_930_cov_15.686032:1-930 [pilon] NODE_2727_length_923_cov_1.771820:1-923 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 42, Coverage: 5, minDepth: 5 [pilon] Confirmed 464 of 923 bases (50.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2727_length_923_cov_1.771820:1-923 [pilon] Processing NODE_3276_length_819_cov_2.601719:1-819 [pilon] NODE_14564_length_243_cov_9.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14564_length_243_cov_9.795082:1-243 [pilon] Processing NODE_7640_length_435_cov_35.044586:1-435 [pilon] NODE_8937_length_369_cov_19.370968:1-369 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 111, Coverage: 13, minDepth: 5 [pilon] Confirmed 234 of 369 bases (63.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8937_length_369_cov_19.370968:1-369 [pilon] NODE_8626_length_387_cov_16.191729:1-387 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 103, Coverage: 19, minDepth: 5 [pilon] Confirmed 322 of 387 bases (83.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8626_length_387_cov_16.191729:1-387 [pilon] NODE_3267_length_820_cov_14.653791:1-820 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 223, Coverage: 29, minDepth: 7 [pilon] Confirmed 514 of 820 bases (62.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_2968_length_880_cov_1.988142:1-880 [pilon] Finished processing NODE_3267_length_820_cov_14.653791:1-820 [pilon] Processing NODE_11663_length_258_cov_11.080292:1-258 [pilon] Processing NODE_14152_length_243_cov_13.098361:1-243 [pilon] NODE_3405_length_798_cov_2.568685:1-798 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 56, Coverage: 9, minDepth: 5 [pilon] Confirmed 518 of 798 bases (64.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3405_length_798_cov_2.568685:1-798 [pilon] Processing NODE_4301_length_681_cov_10.628571:1-681 [pilon] NODE_15010_length_243_cov_5.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15010_length_243_cov_5.319672:1-243 [pilon] Processing NODE_10317_length_312_cov_25.706806:1-312 [pilon] NODE_9222_length_357_cov_12.389831:1-357 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 65, Coverage: 6, minDepth: 5 [pilon] Confirmed 181 of 357 bases (50.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9222_length_357_cov_12.389831:1-357 [pilon] Processing NODE_2665_length_935_cov_0.918919:1-935 [pilon] NODE_1060_length_1460_cov_10.180732:1-1460 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 361, Coverage: 27, minDepth: 7 [pilon] Confirmed 1004 of 1460 bases (68.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1060_length_1460_cov_10.180732:1-1460 [pilon] Processing NODE_6747_length_486_cov_36.989041:1-486 [pilon] NODE_8317_length_403_cov_58.911348:1-403 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 368, Coverage: 72, minDepth: 18 [pilon] Confirmed 352 of 403 bases (87.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8317_length_403_cov_58.911348:1-403 [pilon] Processing NODE_10695_length_298_cov_12.610169:1-298 [pilon] NODE_13427_length_243_cov_19.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13427_length_243_cov_19.040984:1-243 [pilon] Processing NODE_5211_length_600_cov_37.179541:1-600 [pilon] NODE_9485_length_346_cov_28.222222:1-346 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 131, Coverage: 17, minDepth: 5 [pilon] Confirmed 258 of 346 bases (74.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9485_length_346_cov_28.222222:1-346 [pilon] Processing NODE_7114_length_465_cov_6.872093:1-465 [pilon] NODE_10753_length_295_cov_16.971264:1-295 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 60, Coverage: 4, minDepth: 5 [pilon] Confirmed 124 of 295 bases (42.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10753_length_295_cov_16.971264:1-295 [pilon] Processing NODE_13852_length_243_cov_15.295082:1-243 [pilon] NODE_10700_length_297_cov_28.426136:1-297 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 115, Coverage: 8, minDepth: 5 [pilon] Confirmed 185 of 297 bases (62.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10700_length_297_cov_28.426136:1-297 [pilon] Processing NODE_9335_length_353_cov_17.814655:1-353 [pilon] NODE_2780_length_913_cov_0.895202:1-913 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 29, Coverage: 3, minDepth: 5 [pilon] Confirmed 284 of 913 bases (31.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2780_length_913_cov_0.895202:1-913 [pilon] Processing NODE_11090_length_279_cov_34.367089:1-279 [pilon] NODE_6583_length_498_cov_10.352785:1-498 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 104, Coverage: 16, minDepth: 5 [pilon] Confirmed 391 of 498 bases (78.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6583_length_498_cov_10.352785:1-498 [pilon] Processing NODE_5377_length_586_cov_2.225806:1-586 [pilon] NODE_11802_length_252_cov_29.763359:1-252 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 86, Coverage: 9, minDepth: 5 [pilon] Confirmed 229 of 252 bases (90.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11802_length_252_cov_29.763359:1-252 [pilon] Processing NODE_9011_length_366_cov_12.146939:1-366 [pilon] NODE_9490_length_346_cov_8.933333:1-346 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 59, Coverage: 5, minDepth: 5 [pilon] Confirmed 189 of 346 bases (54.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9490_length_346_cov_8.933333:1-346 [pilon] Processing NODE_1684_length_1187_cov_36.861163:1-1187 [pilon] NODE_544_length_1864_cov_14.820425:1-1864 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 585, Coverage: 37, minDepth: 9 [pilon] Confirmed 1601 of 1864 bases (85.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_544_length_1864_cov_14.820425:1-1864 [pilon] Processing NODE_133_length_2807_cov_18.207744:1-2807 [pilon] NODE_9009_length_366_cov_14.342857:1-366 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 83, Coverage: 7, minDepth: 5 [pilon] Confirmed 264 of 366 bases (72.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9009_length_366_cov_14.342857:1-366 [pilon] Processing NODE_13311_length_243_cov_20.163934:1-243 [pilon] NODE_12689_length_243_cov_26.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12689_length_243_cov_26.377049:1-243 [pilon] Processing NODE_1488_length_1267_cov_1.250436:1-1267 [pilon] NODE_6245_length_521_cov_24.405000:1-521 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 258, Coverage: 37, minDepth: 9 [pilon] Confirmed 459 of 521 bases (88.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6245_length_521_cov_24.405000:1-521 [pilon] Processing NODE_3914_length_726_cov_2.433058:1-726 [pilon] NODE_894_length_1564_cov_20.532225:1-1564 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 688, Coverage: 48, minDepth: 12 [pilon] Confirmed 1315 of 1564 bases (84.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_894_length_1564_cov_20.532225:1-1564 [pilon] Processing NODE_4437_length_667_cov_20.236264:1-667 [pilon] NODE_9452_length_348_cov_12.550661:1-348 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 46, Coverage: 2, minDepth: 5 [pilon] Confirmed 107 of 348 bases (30.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9452_length_348_cov_12.550661:1-348 [pilon] Processing NODE_5547_length_574_cov_2.958057:1-574 [pilon] NODE_10709_length_297_cov_21.198864:1-297 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 98, Coverage: 13, minDepth: 5 [pilon] Confirmed 242 of 297 bases (81.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10709_length_297_cov_21.198864:1-297 [pilon] Processing NODE_9004_length_366_cov_24.428571:1-366 [pilon] NODE_14487_length_243_cov_10.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14487_length_243_cov_10.368852:1-243 [pilon] Processing NODE_14404_length_243_cov_11.049180:1-243 [pilon] NODE_3277_length_819_cov_2.107450:1-819 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 40, Coverage: 6, minDepth: 5 [pilon] Confirmed 491 of 819 bases (59.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3277_length_819_cov_2.107450:1-819 [pilon] Processing NODE_10259_length_315_cov_9.546392:1-315 [pilon] NODE_12398_length_243_cov_31.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12398_length_243_cov_31.032787:1-243 [pilon] Processing NODE_2822_length_906_cov_13.736306:1-906 [pilon] NODE_14152_length_243_cov_13.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14152_length_243_cov_13.098361:1-243 [pilon] Processing NODE_6258_length_520_cov_31.503759:1-520 [pilon] NODE_2694_length_930_cov_15.686032:1-930 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 359, Coverage: 33, minDepth: 8 [pilon] Confirmed 672 of 930 bases (72.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2694_length_930_cov_15.686032:1-930 [pilon] Processing NODE_20_length_5170_cov_4.064567:1-5170 [pilon] NODE_3276_length_819_cov_2.601719:1-819 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 48, Coverage: 8, minDepth: 5 [pilon] Confirmed 438 of 819 bases (53.48%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3276_length_819_cov_2.601719:1-819 [pilon] Processing NODE_3252_length_824_cov_1.018492:1-824 [pilon] NODE_7640_length_435_cov_35.044586:1-435 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 305, Coverage: 20, minDepth: 5 [pilon] Confirmed 210 of 435 bases (48.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7640_length_435_cov_35.044586:1-435 [pilon] Processing NODE_6538_length_501_cov_10.255263:1-501 [pilon] NODE_6747_length_486_cov_36.989041:1-486 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 364, Coverage: 30, minDepth: 8 [pilon] Confirmed 304 of 486 bases (62.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6747_length_486_cov_36.989041:1-486 [pilon] Processing NODE_12241_length_243_cov_34.975410:1-243 [pilon] NODE_4301_length_681_cov_10.628571:1-681 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 126, Coverage: 24, minDepth: 6 [pilon] Confirmed 525 of 681 bases (77.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4301_length_681_cov_10.628571:1-681 [pilon] Processing NODE_14040_length_243_cov_13.909836:1-243 [pilon] NODE_2968_length_880_cov_1.988142:1-880 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 39, Coverage: 6, minDepth: 5 [pilon] Confirmed 440 of 880 bases (50.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2968_length_880_cov_1.988142:1-880 [pilon] Processing NODE_14335_length_243_cov_11.590164:1-243 [pilon] NODE_11663_length_258_cov_11.080292:1-258 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 37, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11663_length_258_cov_11.080292:1-258 [pilon] Processing NODE_12836_length_243_cov_24.713115:1-243 [pilon] NODE_10317_length_312_cov_25.706806:1-312 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 129, Coverage: 8, minDepth: 5 [pilon] Confirmed 264 of 312 bases (84.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10317_length_312_cov_25.706806:1-312 [pilon] Processing NODE_10203_length_317_cov_21.229592:1-317 [pilon] NODE_2665_length_935_cov_0.918919:1-935 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 33, Coverage: 4, minDepth: 5 [pilon] Confirmed 472 of 935 bases (50.48%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2665_length_935_cov_0.918919:1-935 [pilon] Processing NODE_6058_length_535_cov_15.173913:1-535 [pilon] NODE_7114_length_465_cov_6.872093:1-465 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 59, Coverage: 2, minDepth: 5 [pilon] Confirmed 77 of 465 bases (16.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7114_length_465_cov_6.872093:1-465 [pilon] Processing NODE_5740_length_560_cov_12.560364:1-560 [pilon] NODE_10695_length_298_cov_12.610169:1-298 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 51, Coverage: 4, minDepth: 5 [pilon] Confirmed 140 of 298 bases (46.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10695_length_298_cov_12.610169:1-298 [pilon] Processing NODE_10382_length_309_cov_24.377660:1-309 [pilon] NODE_5211_length_600_cov_37.179541:1-600 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 414, Coverage: 69, minDepth: 17 [pilon] Confirmed 550 of 600 bases (91.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5211_length_600_cov_37.179541:1-600 [pilon] Processing NODE_8130_length_411_cov_30.755172:1-411 [pilon] NODE_11090_length_279_cov_34.367089:1-279 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 124, Coverage: 6, minDepth: 5 [pilon] Confirmed 155 of 279 bases (55.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11090_length_279_cov_34.367089:1-279 [pilon] Processing NODE_3317_length_812_cov_8.260492:1-812 [pilon] NODE_9335_length_353_cov_17.814655:1-353 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 87, Coverage: 4, minDepth: 5 [pilon] Confirmed 199 of 353 bases (56.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9335_length_353_cov_17.814655:1-353 [pilon] Processing NODE_15199_length_159_cov_71.157895:1-159 [pilon] NODE_13852_length_243_cov_15.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13852_length_243_cov_15.295082:1-243 [pilon] Processing NODE_9318_length_354_cov_5.927039:1-354 [pilon] NODE_5377_length_586_cov_2.225806:1-586 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 31, Coverage: 6, minDepth: 5 [pilon] Confirmed 342 of 586 bases (58.36%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5377_length_586_cov_2.225806:1-586 [pilon] Processing NODE_12388_length_243_cov_31.319672:1-243 [pilon] NODE_9011_length_366_cov_12.146939:1-366 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 64, Coverage: 2, minDepth: 5 [pilon] Confirmed 129 of 366 bases (35.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9011_length_366_cov_12.146939:1-366 [pilon] Processing NODE_3951_length_721_cov_1.755000:1-721 [pilon] NODE_1684_length_1187_cov_36.861163:1-1187 log: [pilon] frags shovill.bam: coverage 88 [pilon] Total Reads: 944, Coverage: 88, minDepth: 22 [pilon] Confirmed 999 of 1187 bases (84.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1684_length_1187_cov_36.861163:1-1187 [pilon] Processing NODE_3452_length_791_cov_21.626866:1-791 [pilon] NODE_133_length_2807_cov_18.207744:1-2807 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 1154, Coverage: 40, minDepth: 10 [pilon] Confirmed 2259 of 2807 bases (80.48%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_133_length_2807_cov_18.207744:1-2807 [pilon] Processing NODE_2268_length_1017_cov_30.256696:1-1017 [pilon] NODE_5547_length_574_cov_2.958057:1-574 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 51, Coverage: 10, minDepth: 5 [pilon] Confirmed 518 of 574 bases (90.24%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5547_length_574_cov_2.958057:1-574 [pilon] Processing NODE_7837_length_425_cov_40.664474:1-425 [pilon] NODE_13311_length_243_cov_20.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13311_length_243_cov_20.163934:1-243 [pilon] Processing NODE_4351_length_676_cov_2.562162:1-676 [pilon] NODE_1488_length_1267_cov_1.250436:1-1267 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 46, Coverage: 5, minDepth: 5 [pilon] Confirmed 546 of 1267 bases (43.09%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1488_length_1267_cov_1.250436:1-1267 [pilon] Processing NODE_11908_length_249_cov_16.234375:1-249 [pilon] NODE_4437_length_667_cov_20.236264:1-667 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 268, Coverage: 27, minDepth: 7 [pilon] Confirmed 598 of 667 bases (89.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4437_length_667_cov_20.236264:1-667 [pilon] Processing NODE_6008_length_540_cov_12.114558:1-540 [pilon] NODE_14404_length_243_cov_11.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14404_length_243_cov_11.049180:1-243 [pilon] Processing NODE_12254_length_243_cov_34.442623:1-243 [pilon] NODE_2822_length_906_cov_13.736306:1-906 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 205, Coverage: 22, minDepth: 6 [pilon] Confirmed 678 of 906 bases (74.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2822_length_906_cov_13.736306:1-906 [pilon] Processing NODE_13545_length_243_cov_17.959016:1-243 [pilon] NODE_9004_length_366_cov_24.428571:1-366 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 143, Coverage: 24, minDepth: 6 [pilon] Confirmed 311 of 366 bases (84.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9004_length_366_cov_24.428571:1-366 [pilon] Processing NODE_13983_length_243_cov_14.270492:1-243 [pilon] NODE_10259_length_315_cov_9.546392:1-315 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 44, Coverage: 2, minDepth: 5 [pilon] Confirmed 35 of 315 bases (11.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10259_length_315_cov_9.546392:1-315 [pilon] Processing NODE_9484_length_346_cov_28.893333:1-346 [pilon] NODE_12836_length_243_cov_24.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12836_length_243_cov_24.713115:1-243 [pilon] Processing NODE_14716_length_243_cov_8.450820:1-243 [pilon] NODE_3252_length_824_cov_1.018492:1-824 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 39, Coverage: 5, minDepth: 5 [pilon] Confirmed 441 of 824 bases (53.52%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3252_length_824_cov_1.018492:1-824 [pilon] Processing NODE_9594_length_342_cov_14.809955:1-342 [pilon] NODE_12241_length_243_cov_34.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12241_length_243_cov_34.975410:1-243 [pilon] Processing NODE_5381_length_586_cov_0.722581:1-586 [pilon] NODE_6258_length_520_cov_31.503759:1-520 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 346, Coverage: 58, minDepth: 15 [pilon] Confirmed 394 of 520 bases (75.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6258_length_520_cov_31.503759:1-520 [pilon] Processing NODE_1003_length_1491_cov_18.708029:1-1491 [pilon] NODE_6538_length_501_cov_10.255263:1-501 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 87, Coverage: 20, minDepth: 5 [pilon] Confirmed 413 of 501 bases (82.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6538_length_501_cov_10.255263:1-501 [pilon] Processing NODE_8178_length_409_cov_26.065972:1-409 [pilon] NODE_3914_length_726_cov_2.433058:1-726 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 46, Coverage: 8, minDepth: 5 [pilon] Confirmed 380 of 726 bases (52.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3914_length_726_cov_2.433058:1-726 [pilon] Processing NODE_9037_length_364_cov_36.337449:1-364 [pilon] NODE_12388_length_243_cov_31.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12388_length_243_cov_31.319672:1-243 [pilon] Processing NODE_2197_length_1034_cov_6.526835:1-1034 [pilon] NODE_20_length_5170_cov_4.064567:1-5170 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 527, Coverage: 13, minDepth: 5 [pilon] Confirmed 4447 of 5170 bases (86.02%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_20_length_5170_cov_4.064567:1-5170 [pilon] Processing NODE_14027_length_243_cov_14.000000:1-243 [pilon] NODE_14335_length_243_cov_11.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14335_length_243_cov_11.590164:1-243 [pilon] Processing NODE_4320_length_678_cov_23.714542:1-678 [pilon] NODE_14040_length_243_cov_13.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14040_length_243_cov_13.909836:1-243 [pilon] Processing NODE_9960_length_327_cov_20.708738:1-327 [pilon] NODE_10203_length_317_cov_21.229592:1-317 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 92, Coverage: 12, minDepth: 5 [pilon] Confirmed 225 of 317 bases (70.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10203_length_317_cov_21.229592:1-317 [pilon] Processing NODE_12659_length_243_cov_26.729508:1-243 [pilon] NODE_10382_length_309_cov_24.377660:1-309 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 94, Coverage: 6, minDepth: 5 [pilon] Confirmed 170 of 309 bases (55.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10382_length_309_cov_24.377660:1-309 [pilon] Processing NODE_6472_length_505_cov_38.934896:1-505 [pilon] NODE_9318_length_354_cov_5.927039:1-354 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 41, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 354 bases (36.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9318_length_354_cov_5.927039:1-354 [pilon] Processing NODE_7124_length_464_cov_26.046647:1-464 [pilon] NODE_6058_length_535_cov_15.173913:1-535 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 145, Coverage: 16, minDepth: 5 [pilon] Confirmed 389 of 535 bases (72.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6058_length_535_cov_15.173913:1-535 [pilon] NODE_8130_length_411_cov_30.755172:1-411 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 214, Coverage: 15, minDepth: 5 [pilon] Confirmed 179 of 411 bases (43.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8130_length_411_cov_30.755172:1-411 [pilon] Processing NODE_11650_length_258_cov_15.145985:1-258 [pilon] NODE_15199_length_159_cov_71.157895:1-159 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 159 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15199_length_159_cov_71.157895:1-159 [pilon] Processing NODE_4435_length_667_cov_26.153846:1-667 [pilon] Processing NODE_8437_length_398_cov_7.631769:1-398 [pilon] NODE_5740_length_560_cov_12.560364:1-560 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 137, Coverage: 19, minDepth: 5 [pilon] Confirmed 363 of 560 bases (64.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5740_length_560_cov_12.560364:1-560 [pilon] Processing NODE_7978_length_419_cov_19.107383:1-419 [pilon] NODE_3317_length_812_cov_8.260492:1-812 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 161, Coverage: 16, minDepth: 5 [pilon] Confirmed 739 of 812 bases (91.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3317_length_812_cov_8.260492:1-812 [pilon] Processing NODE_13589_length_243_cov_17.590164:1-243 [pilon] NODE_3951_length_721_cov_1.755000:1-721 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 37, Coverage: 6, minDepth: 5 [pilon] Confirmed 434 of 721 bases (60.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3951_length_721_cov_1.755000:1-721 [pilon] Processing NODE_7169_length_461_cov_29.132353:1-461 [pilon] NODE_12254_length_243_cov_34.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12254_length_243_cov_34.442623:1-243 [pilon] Processing NODE_5834_length_553_cov_1.405093:1-553 [pilon] NODE_2268_length_1017_cov_30.256696:1-1017 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 628, Coverage: 63, minDepth: 16 [pilon] Confirmed 835 of 1017 bases (82.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2268_length_1017_cov_30.256696:1-1017 [pilon] Processing NODE_10464_length_306_cov_13.167568:1-306 [pilon] NODE_3452_length_791_cov_21.626866:1-791 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 315, Coverage: 38, minDepth: 10 [pilon] Confirmed 558 of 791 bases (70.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3452_length_791_cov_21.626866:1-791 [pilon] Processing NODE_13441_length_243_cov_18.934426:1-243 [pilon] NODE_7837_length_425_cov_40.664474:1-425 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 278, Coverage: 43, minDepth: 11 [pilon] Confirmed 354 of 425 bases (83.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7837_length_425_cov_40.664474:1-425 [pilon] Processing NODE_4396_length_671_cov_24.400000:1-671 [pilon] NODE_4351_length_676_cov_2.562162:1-676 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 37, Coverage: 7, minDepth: 5 [pilon] Confirmed 467 of 676 bases (69.08%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4351_length_676_cov_2.562162:1-676 [pilon] Processing NODE_13745_length_243_cov_16.090164:1-243 [pilon] NODE_6008_length_540_cov_12.114558:1-540 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 212, Coverage: 32, minDepth: 8 [pilon] Confirmed 397 of 540 bases (73.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6008_length_540_cov_12.114558:1-540 [pilon] Processing NODE_10120_length_321_cov_10.740000:1-321 [pilon] NODE_11908_length_249_cov_16.234375:1-249 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 51, Coverage: 4, minDepth: 5 [pilon] Confirmed 105 of 249 bases (42.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11908_length_249_cov_16.234375:1-249 [pilon] Processing NODE_9608_length_342_cov_6.556561:1-342 [pilon] NODE_13545_length_243_cov_17.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13545_length_243_cov_17.959016:1-243 [pilon] NODE_2197_length_1034_cov_6.526835:1-1034 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 171, Coverage: 14, minDepth: 5 [pilon] Confirmed 723 of 1034 bases (69.92%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2197_length_1034_cov_6.526835:1-1034 [pilon] Processing NODE_12577_length_243_cov_27.819672:1-243 [pilon] Processing NODE_10495_length_305_cov_13.331522:1-305 [pilon] NODE_13983_length_243_cov_14.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13983_length_243_cov_14.270492:1-243 [pilon] Processing NODE_6076_length_534_cov_5.745763:1-534 [pilon] NODE_9484_length_346_cov_28.893333:1-346 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 99, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 346 bases (37.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9484_length_346_cov_28.893333:1-346 [pilon] Processing NODE_907_length_1552_cov_2.574423:1-1552 [pilon] NODE_14716_length_243_cov_8.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14716_length_243_cov_8.450820:1-243 [pilon] Processing NODE_6294_length_518_cov_27.481108:1-518 [pilon] NODE_7124_length_464_cov_26.046647:1-464 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 287, Coverage: 43, minDepth: 11 [pilon] Confirmed 387 of 464 bases (83.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7124_length_464_cov_26.046647:1-464 [pilon] Processing NODE_12670_length_243_cov_26.565574:1-243 [pilon] NODE_5381_length_586_cov_0.722581:1-586 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 586 bases (21.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5381_length_586_cov_0.722581:1-586 [pilon] Processing NODE_2979_length_878_cov_3.166446:1-878 [pilon] NODE_9594_length_342_cov_14.809955:1-342 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 58, Coverage: 4, minDepth: 5 [pilon] Confirmed 133 of 342 bases (38.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9594_length_342_cov_14.809955:1-342 [pilon] Processing NODE_8648_length_385_cov_25.515152:1-385 [pilon] NODE_8178_length_409_cov_26.065972:1-409 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 200, Coverage: 25, minDepth: 6 [pilon] Confirmed 251 of 409 bases (61.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8178_length_409_cov_26.065972:1-409 [pilon] Processing NODE_13341_length_243_cov_19.918033:1-243 [pilon] NODE_1003_length_1491_cov_18.708029:1-1491 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 668, Coverage: 50, minDepth: 13 [pilon] Confirmed 1297 of 1491 bases (86.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1003_length_1491_cov_18.708029:1-1491 [pilon] Processing NODE_3638_length_763_cov_9.942368:1-763 [pilon] NODE_9037_length_364_cov_36.337449:1-364 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 210, Coverage: 26, minDepth: 7 [pilon] Confirmed 317 of 364 bases (87.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9037_length_364_cov_36.337449:1-364 [pilon] Processing NODE_12454_length_243_cov_29.827869:1-243 [pilon] NODE_14027_length_243_cov_14.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14027_length_243_cov_14.000000:1-243 [pilon] Processing NODE_14059_length_243_cov_13.770492:1-243 [pilon] NODE_5834_length_553_cov_1.405093:1-553 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 161 of 553 bases (29.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5834_length_553_cov_1.405093:1-553 [pilon] Processing NODE_10617_length_300_cov_24.139665:1-300 [pilon] NODE_4320_length_678_cov_23.714542:1-678 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 450, Coverage: 65, minDepth: 16 [pilon] Confirmed 572 of 678 bases (84.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4320_length_678_cov_23.714542:1-678 [pilon] Processing NODE_3302_length_815_cov_2.102305:1-815 [pilon] NODE_9960_length_327_cov_20.708738:1-327 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 81, Coverage: 3, minDepth: 5 [pilon] Confirmed 113 of 327 bases (34.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9960_length_327_cov_20.708738:1-327 [pilon] Processing NODE_12786_length_243_cov_25.204918:1-243 [pilon] NODE_11650_length_258_cov_15.145985:1-258 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 52, Coverage: 3, minDepth: 5 [pilon] Confirmed 88 of 258 bases (34.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11650_length_258_cov_15.145985:1-258 [pilon] Processing NODE_12862_length_243_cov_24.377049:1-243 [pilon] NODE_12659_length_243_cov_26.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12659_length_243_cov_26.729508:1-243 [pilon] Processing NODE_4535_length_658_cov_20.292365:1-658 [pilon] NODE_8437_length_398_cov_7.631769:1-398 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 47, Coverage: 8, minDepth: 5 [pilon] Confirmed 249 of 398 bases (62.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8437_length_398_cov_7.631769:1-398 [pilon] Processing NODE_12327_length_243_cov_32.631148:1-243 [pilon] NODE_4435_length_667_cov_26.153846:1-667 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 407, Coverage: 56, minDepth: 14 [pilon] Confirmed 627 of 667 bases (94.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4435_length_667_cov_26.153846:1-667 [pilon] Processing NODE_14421_length_243_cov_10.909836:1-243 [pilon] NODE_6472_length_505_cov_38.934896:1-505 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 335, Coverage: 56, minDepth: 14 [pilon] Confirmed 439 of 505 bases (86.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6472_length_505_cov_38.934896:1-505 [pilon] Processing NODE_5557_length_573_cov_28.984513:1-573 [pilon] NODE_7978_length_419_cov_19.107383:1-419 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 149, Coverage: 7, minDepth: 5 [pilon] Confirmed 158 of 419 bases (37.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7978_length_419_cov_19.107383:1-419 [pilon] Processing NODE_5479_length_579_cov_7.886463:1-579 [pilon] NODE_13589_length_243_cov_17.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13589_length_243_cov_17.590164:1-243 [pilon] Processing NODE_8302_length_404_cov_41.565371:1-404 [pilon] NODE_10464_length_306_cov_13.167568:1-306 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 52, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 306 bases (42.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10464_length_306_cov_13.167568:1-306 [pilon] Processing NODE_14582_length_243_cov_9.581967:1-243 [pilon] NODE_13441_length_243_cov_18.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13441_length_243_cov_18.934426:1-243 [pilon] Processing NODE_835_length_1608_cov_39.405514:1-1608 [pilon] NODE_7169_length_461_cov_29.132353:1-461 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 228, Coverage: 33, minDepth: 8 [pilon] Confirmed 378 of 461 bases (82.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7169_length_461_cov_29.132353:1-461 [pilon] Processing NODE_4031_length_712_cov_4.974619:1-712 [pilon] NODE_10495_length_305_cov_13.331522:1-305 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 64, Coverage: 6, minDepth: 5 [pilon] Confirmed 170 of 305 bases (55.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10495_length_305_cov_13.331522:1-305 [pilon] Processing NODE_14267_length_243_cov_12.090164:1-243 [pilon] NODE_12670_length_243_cov_26.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12670_length_243_cov_26.565574:1-243 [pilon] Processing NODE_2057_length_1070_cov_17.275026:1-1070 [pilon] NODE_13745_length_243_cov_16.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13745_length_243_cov_16.090164:1-243 [pilon] Processing NODE_10737_length_296_cov_36.251429:1-296 [pilon] NODE_4396_length_671_cov_24.400000:1-671 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 300, Coverage: 36, minDepth: 9 [pilon] Confirmed 583 of 671 bases (86.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4396_length_671_cov_24.400000:1-671 [pilon] Processing NODE_8320_length_403_cov_36.223404:1-403 [pilon] NODE_9608_length_342_cov_6.556561:1-342 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 25, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 342 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9608_length_342_cov_6.556561:1-342 [pilon] Processing NODE_4552_length_657_cov_10.994403:1-657 [pilon] NODE_10120_length_321_cov_10.740000:1-321 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 47, Coverage: 6, minDepth: 5 [pilon] Confirmed 191 of 321 bases (59.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10120_length_321_cov_10.740000:1-321 [pilon] Processing NODE_762_length_1658_cov_9.854262:1-1658 [pilon] NODE_6076_length_534_cov_5.745763:1-534 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 62, Coverage: 4, minDepth: 5 [pilon] Confirmed 226 of 534 bases (42.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6076_length_534_cov_5.745763:1-534 [pilon] Processing NODE_14399_length_243_cov_11.081967:1-243 [pilon] NODE_10617_length_300_cov_24.139665:1-300 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 101, Coverage: 13, minDepth: 5 [pilon] Confirmed 216 of 300 bases (72.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10617_length_300_cov_24.139665:1-300 [pilon] Processing NODE_5791_length_556_cov_1.859770:1-556 [pilon] NODE_907_length_1552_cov_2.574423:1-1552 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 101, Coverage: 8, minDepth: 5 [pilon] Confirmed 1151 of 1552 bases (74.16%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12577_length_243_cov_27.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12577_length_243_cov_27.819672:1-243 [pilon] Finished processing NODE_907_length_1552_cov_2.574423:1-1552 [pilon] Processing NODE_7419_length_447_cov_11.150307:1-447 [pilon] Processing NODE_1993_length_1088_cov_26.555326:1-1088 [pilon] NODE_2979_length_878_cov_3.166446:1-878 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 63, Coverage: 9, minDepth: 5 [pilon] Confirmed 618 of 878 bases (70.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2979_length_878_cov_3.166446:1-878 [pilon] Processing NODE_12468_length_243_cov_29.663934:1-243 [pilon] NODE_6294_length_518_cov_27.481108:1-518 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 273, Coverage: 38, minDepth: 10 [pilon] Confirmed 426 of 518 bases (82.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6294_length_518_cov_27.481108:1-518 [pilon] Processing NODE_6303_length_518_cov_0.778338:1-518 [pilon] NODE_13341_length_243_cov_19.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13341_length_243_cov_19.918033:1-243 [pilon] Processing NODE_12133_length_243_cov_41.344262:1-243 [pilon] NODE_12454_length_243_cov_29.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12454_length_243_cov_29.827869:1-243 [pilon] Processing NODE_11496_length_264_cov_8.699301:1-264 [pilon] NODE_3302_length_815_cov_2.102305:1-815 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 40, Coverage: 6, minDepth: 5 [pilon] Confirmed 367 of 815 bases (45.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3302_length_815_cov_2.102305:1-815 [pilon] Processing NODE_301_length_2238_cov_25.998111:1-2238 [pilon] NODE_8648_length_385_cov_25.515152:1-385 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 160, Coverage: 24, minDepth: 6 [pilon] Confirmed 363 of 385 bases (94.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8648_length_385_cov_25.515152:1-385 [pilon] Processing NODE_6482_length_504_cov_50.885117:1-504 [pilon] NODE_14059_length_243_cov_13.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14059_length_243_cov_13.770492:1-243 [pilon] Processing NODE_1335_length_1327_cov_21.642620:1-1327 [pilon] NODE_14267_length_243_cov_12.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14267_length_243_cov_12.090164:1-243 [pilon] Processing NODE_6306_length_517_cov_28.760101:1-517 [pilon] NODE_3638_length_763_cov_9.942368:1-763 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 161, Coverage: 17, minDepth: 5 [pilon] Confirmed 681 of 763 bases (89.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3638_length_763_cov_9.942368:1-763 [pilon] Processing NODE_1709_length_1178_cov_1.922422:1-1178 [pilon] NODE_12862_length_243_cov_24.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12862_length_243_cov_24.377049:1-243 [pilon] Processing NODE_1978_length_1092_cov_24.646756:1-1092 [pilon] NODE_12327_length_243_cov_32.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 84, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12327_length_243_cov_32.631148:1-243 [pilon] Processing NODE_6452_length_507_cov_8.129534:1-507 [pilon] NODE_14421_length_243_cov_10.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12786_length_243_cov_25.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12786_length_243_cov_25.204918:1-243 [pilon] Finished processing NODE_14421_length_243_cov_10.909836:1-243 [pilon] Processing NODE_2687_length_931_cov_29.929630:1-931 [pilon] Processing NODE_4729_length_641_cov_4.040385:1-641 [pilon] NODE_4535_length_658_cov_20.292365:1-658 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 262, Coverage: 43, minDepth: 11 [pilon] Confirmed 541 of 658 bases (82.22%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4535_length_658_cov_20.292365:1-658 [pilon] Processing NODE_316_length_2204_cov_2.891983:1-2204 [pilon] NODE_5557_length_573_cov_28.984513:1-573 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 300, Coverage: 33, minDepth: 8 [pilon] Confirmed 399 of 573 bases (69.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5557_length_573_cov_28.984513:1-573 [pilon] Processing NODE_13944_length_243_cov_14.565574:1-243 [pilon] NODE_5479_length_579_cov_7.886463:1-579 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 90, Coverage: 11, minDepth: 5 [pilon] Confirmed 395 of 579 bases (68.22%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5479_length_579_cov_7.886463:1-579 [pilon] Processing NODE_5480_length_579_cov_7.668122:1-579 [pilon] NODE_2057_length_1070_cov_17.275026:1-1070 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 388, Coverage: 41, minDepth: 10 [pilon] Confirmed 918 of 1070 bases (85.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2057_length_1070_cov_17.275026:1-1070 [pilon] Processing NODE_8268_length_405_cov_29.295775:1-405 [pilon] NODE_14582_length_243_cov_9.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14582_length_243_cov_9.581967:1-243 [pilon] Processing NODE_6967_length_473_cov_70.139205:1-473 [pilon] NODE_8302_length_404_cov_41.565371:1-404 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 270, Coverage: 44, minDepth: 11 [pilon] Confirmed 336 of 404 bases (83.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8302_length_404_cov_41.565371:1-404 [pilon] Processing NODE_2126_length_1052_cov_29.994629:1-1052 [pilon] NODE_4031_length_712_cov_4.974619:1-712 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 91, Coverage: 12, minDepth: 5 [pilon] Confirmed 441 of 712 bases (61.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4031_length_712_cov_4.974619:1-712 [pilon] Processing NODE_12210_length_243_cov_36.418033:1-243 [pilon] NODE_5791_length_556_cov_1.859770:1-556 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 31, Coverage: 7, minDepth: 5 [pilon] Confirmed 381 of 556 bases (68.53%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5791_length_556_cov_1.859770:1-556 [pilon] Processing NODE_13625_length_243_cov_17.237705:1-243 [pilon] NODE_835_length_1608_cov_39.405514:1-1608 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 1330, Coverage: 91, minDepth: 23 [pilon] Confirmed 1522 of 1608 bases (94.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_835_length_1608_cov_39.405514:1-1608 [pilon] Processing NODE_2297_length_1011_cov_24.757303:1-1011 [pilon] NODE_10737_length_296_cov_36.251429:1-296 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 138, Coverage: 24, minDepth: 6 [pilon] Confirmed 261 of 296 bases (88.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10737_length_296_cov_36.251429:1-296 [pilon] Processing NODE_4291_length_682_cov_5.597148:1-682 [pilon] NODE_8320_length_403_cov_36.223404:1-403 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 211, Coverage: 38, minDepth: 10 [pilon] Confirmed 351 of 403 bases (87.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8320_length_403_cov_36.223404:1-403 [pilon] Processing NODE_12961_length_243_cov_23.344262:1-243 [pilon] NODE_4552_length_657_cov_10.994403:1-657 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 133, Coverage: 15, minDepth: 5 [pilon] Confirmed 458 of 657 bases (69.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4552_length_657_cov_10.994403:1-657 [pilon] Processing NODE_10995_length_285_cov_6.634146:1-285 [pilon] NODE_762_length_1658_cov_9.854262:1-1658 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 370, Coverage: 26, minDepth: 7 [pilon] Confirmed 1316 of 1658 bases (79.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_762_length_1658_cov_9.854262:1-1658 [pilon] Processing NODE_3433_length_794_cov_3.988113:1-794 [pilon] NODE_14399_length_243_cov_11.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14399_length_243_cov_11.081967:1-243 [pilon] Processing NODE_3264_length_821_cov_3.017143:1-821 [pilon] NODE_6306_length_517_cov_28.760101:1-517 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 263, Coverage: 47, minDepth: 12 [pilon] Confirmed 438 of 517 bases (84.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6306_length_517_cov_28.760101:1-517 [pilon] Processing NODE_11425_length_267_cov_8.849315:1-267 [pilon] NODE_7419_length_447_cov_11.150307:1-447 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 72, Coverage: 14, minDepth: 5 [pilon] Confirmed 341 of 447 bases (76.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7419_length_447_cov_11.150307:1-447 [pilon] Processing NODE_3965_length_719_cov_4.123746:1-719 [pilon] NODE_1993_length_1088_cov_26.555326:1-1088 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 630, Coverage: 39, minDepth: 10 [pilon] Confirmed 858 of 1088 bases (78.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1993_length_1088_cov_26.555326:1-1088 [pilon] Processing NODE_3644_length_762_cov_26.237129:1-762 [pilon] NODE_12468_length_243_cov_29.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12468_length_243_cov_29.663934:1-243 [pilon] Processing NODE_650_length_1746_cov_11.975385:1-1746 [pilon] NODE_8268_length_405_cov_29.295775:1-405 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 160, Coverage: 24, minDepth: 6 [pilon] Confirmed 267 of 405 bases (65.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8268_length_405_cov_29.295775:1-405 [pilon] Processing NODE_14737_length_243_cov_8.229508:1-243 [pilon] NODE_12133_length_243_cov_41.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 118, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12133_length_243_cov_41.344262:1-243 [pilon] Processing NODE_14256_length_243_cov_12.221311:1-243 [pilon] NODE_11496_length_264_cov_8.699301:1-264 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 25, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11496_length_264_cov_8.699301:1-264 [pilon] NODE_6303_length_518_cov_0.778338:1-518 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 19, Coverage: 4, minDepth: 5 [pilon] Confirmed 201 of 518 bases (38.80%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6303_length_518_cov_0.778338:1-518 [pilon] Processing NODE_11361_length_270_cov_5.295302:1-270 [pilon] Processing NODE_2883_length_896_cov_2.264516:1-896 [pilon] NODE_6482_length_504_cov_50.885117:1-504 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 453, Coverage: 80, minDepth: 20 [pilon] Confirmed 434 of 504 bases (86.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6482_length_504_cov_50.885117:1-504 [pilon] Processing NODE_5867_length_550_cov_3.904429:1-550 [pilon] NODE_13625_length_243_cov_17.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13625_length_243_cov_17.237705:1-243 [pilon] Processing NODE_6126_length_530_cov_2.088020:1-530 [pilon] NODE_1709_length_1178_cov_1.922422:1-1178 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 529 of 1178 bases (44.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1709_length_1178_cov_1.922422:1-1178 [pilon] Processing NODE_12469_length_243_cov_29.647541:1-243 [pilon] NODE_6452_length_507_cov_8.129534:1-507 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 78, Coverage: 13, minDepth: 5 [pilon] Confirmed 365 of 507 bases (71.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6452_length_507_cov_8.129534:1-507 [pilon] Processing NODE_800_length_1626_cov_5.761462:1-1626 [pilon] NODE_1335_length_1327_cov_21.642620:1-1327 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 651, Coverage: 44, minDepth: 11 [pilon] Confirmed 1060 of 1327 bases (79.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1335_length_1327_cov_21.642620:1-1327 [pilon] Processing NODE_8243_length_407_cov_0.954545:1-407 [pilon] NODE_4729_length_641_cov_4.040385:1-641 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 52, Coverage: 11, minDepth: 5 [pilon] Confirmed 518 of 641 bases (80.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4729_length_641_cov_4.040385:1-641 [pilon] Processing NODE_14856_length_243_cov_7.122951:1-243 [pilon] NODE_301_length_2238_cov_25.998111:1-2238 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 1346, Coverage: 68, minDepth: 17 [pilon] Confirmed 2075 of 2238 bases (92.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_1978_length_1092_cov_24.646756:1-1092 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 556, Coverage: 53, minDepth: 13 [pilon] Confirmed 662 of 1092 bases (60.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1978_length_1092_cov_24.646756:1-1092 [pilon] Finished processing NODE_301_length_2238_cov_25.998111:1-2238 [pilon] Processing NODE_9543_length_344_cov_54.466368:1-344 [pilon] Processing NODE_11655_length_258_cov_13.065693:1-258 [pilon] NODE_6967_length_473_cov_70.139205:1-473 log: [pilon] frags shovill.bam: coverage 93 [pilon] Total Reads: 542, Coverage: 93, minDepth: 23 [pilon] Confirmed 417 of 473 bases (88.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6967_length_473_cov_70.139205:1-473 [pilon] Processing NODE_13961_length_243_cov_14.442623:1-243 [pilon] NODE_5480_length_579_cov_7.668122:1-579 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 75, Coverage: 16, minDepth: 5 [pilon] Confirmed 559 of 579 bases (96.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5480_length_579_cov_7.668122:1-579 [pilon] Processing NODE_14557_length_243_cov_9.844262:1-243 [pilon] NODE_12210_length_243_cov_36.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12210_length_243_cov_36.418033:1-243 [pilon] Processing NODE_6996_length_471_cov_37.365714:1-471 [pilon] NODE_2687_length_931_cov_29.929630:1-931 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 575, Coverage: 68, minDepth: 17 [pilon] Confirmed 713 of 931 bases (76.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2687_length_931_cov_29.929630:1-931 [pilon] Processing NODE_14957_length_243_cov_6.040984:1-243 [pilon] NODE_316_length_2204_cov_2.891983:1-2204 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 157, Coverage: 9, minDepth: 5 [pilon] Confirmed 1588 of 2204 bases (72.05%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_316_length_2204_cov_2.891983:1-2204 [pilon] Processing NODE_1156_length_1415_cov_12.460587:1-1415 [pilon] NODE_13944_length_243_cov_14.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13944_length_243_cov_14.565574:1-243 [pilon] Processing NODE_3240_length_826_cov_19.985816:1-826 [pilon] NODE_2126_length_1052_cov_29.994629:1-1052 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 668, Coverage: 54, minDepth: 14 [pilon] Confirmed 903 of 1052 bases (85.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2126_length_1052_cov_29.994629:1-1052 [pilon] Processing NODE_1620_length_1210_cov_25.738292:1-1210 [pilon] NODE_11425_length_267_cov_8.849315:1-267 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 27, Coverage: 4, minDepth: 5 [pilon] Confirmed 43 of 267 bases (16.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11425_length_267_cov_8.849315:1-267 [pilon] Processing NODE_4844_length_631_cov_13.617647:1-631 [pilon] NODE_2297_length_1011_cov_24.757303:1-1011 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 547, Coverage: 50, minDepth: 13 [pilon] Confirmed 727 of 1011 bases (71.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2297_length_1011_cov_24.757303:1-1011 [pilon] Processing NODE_9211_length_357_cov_18.588983:1-357 [pilon] NODE_12961_length_243_cov_23.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12961_length_243_cov_23.344262:1-243 [pilon] Processing NODE_1059_length_1461_cov_25.423134:1-1461 [pilon] NODE_4291_length_682_cov_5.597148:1-682 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 77, Coverage: 11, minDepth: 5 [pilon] Confirmed 599 of 682 bases (87.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4291_length_682_cov_5.597148:1-682 [pilon] Processing NODE_11735_length_255_cov_21.313433:1-255 [pilon] NODE_10995_length_285_cov_6.634146:1-285 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10995_length_285_cov_6.634146:1-285 [pilon] Processing NODE_7475_length_444_cov_18.693498:1-444 [pilon] NODE_14737_length_243_cov_8.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14737_length_243_cov_8.229508:1-243 [pilon] Processing NODE_4188_length_695_cov_11.620209:1-695 [pilon] NODE_6126_length_530_cov_2.088020:1-530 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 226 of 530 bases (42.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6126_length_530_cov_2.088020:1-530 [pilon] Processing NODE_14113_length_243_cov_13.385246:1-243 [pilon] NODE_3433_length_794_cov_3.988113:1-794 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 93, Coverage: 6, minDepth: 5 [pilon] Confirmed 439 of 794 bases (55.29%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3433_length_794_cov_3.988113:1-794 [pilon] Processing NODE_4687_length_644_cov_19.143403:1-644 [pilon] NODE_3264_length_821_cov_3.017143:1-821 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 47, Coverage: 7, minDepth: 5 [pilon] Confirmed 401 of 821 bases (48.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3264_length_821_cov_3.017143:1-821 [pilon] Processing NODE_10334_length_312_cov_14.492147:1-312 [pilon] NODE_3644_length_762_cov_26.237129:1-762 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 434, Coverage: 48, minDepth: 12 [pilon] Confirmed 643 of 762 bases (84.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3644_length_762_cov_26.237129:1-762 [pilon] Processing NODE_4450_length_666_cov_8.220183:1-666 [pilon] NODE_650_length_1746_cov_11.975385:1-1746 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 530, Coverage: 34, minDepth: 9 [pilon] Confirmed 1302 of 1746 bases (74.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_650_length_1746_cov_11.975385:1-1746 [pilon] Processing NODE_9268_length_355_cov_6.594017:1-355 [pilon] NODE_3965_length_719_cov_4.123746:1-719 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 66, Coverage: 11, minDepth: 5 [pilon] Confirmed 602 of 719 bases (83.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3965_length_719_cov_4.123746:1-719 [pilon] Processing NODE_14455_length_243_cov_10.639344:1-243 [pilon] NODE_11361_length_270_cov_5.295302:1-270 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 270 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11361_length_270_cov_5.295302:1-270 [pilon] Processing NODE_3225_length_830_cov_1.638928:1-830 [pilon] NODE_14256_length_243_cov_12.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14256_length_243_cov_12.221311:1-243 [pilon] Processing NODE_4983_length_620_cov_2.204409:1-620 [pilon] NODE_2883_length_896_cov_2.264516:1-896 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 56, Coverage: 7, minDepth: 5 [pilon] Confirmed 549 of 896 bases (61.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2883_length_896_cov_2.264516:1-896 [pilon] Processing NODE_10296_length_313_cov_23.296875:1-313 [pilon] NODE_12469_length_243_cov_29.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12469_length_243_cov_29.647541:1-243 [pilon] Processing NODE_13394_length_243_cov_19.344262:1-243 [pilon] NODE_14856_length_243_cov_7.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14856_length_243_cov_7.122951:1-243 [pilon] Processing NODE_3924_length_724_cov_28.336650:1-724 [pilon] NODE_11655_length_258_cov_13.065693:1-258 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 46, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11655_length_258_cov_13.065693:1-258 [pilon] Processing NODE_13518_length_243_cov_18.204918:1-243 [pilon] NODE_5867_length_550_cov_3.904429:1-550 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 45, Coverage: 10, minDepth: 5 [pilon] Confirmed 420 of 550 bases (76.36%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5867_length_550_cov_3.904429:1-550 [pilon] Processing NODE_9445_length_348_cov_18.105727:1-348 [pilon] NODE_800_length_1626_cov_5.761462:1-1626 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 221, Coverage: 15, minDepth: 5 [pilon] Confirmed 1220 of 1626 bases (75.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_800_length_1626_cov_5.761462:1-1626 [pilon] Processing NODE_13348_length_243_cov_19.852459:1-243 [pilon] NODE_4844_length_631_cov_13.617647:1-631 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 167, Coverage: 13, minDepth: 5 [pilon] Confirmed 366 of 631 bases (58.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4844_length_631_cov_13.617647:1-631 [pilon] Processing NODE_14864_length_243_cov_7.024590:1-243 [pilon] NODE_8243_length_407_cov_0.954545:1-407 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 49 of 407 bases (12.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8243_length_407_cov_0.954545:1-407 [pilon] Processing NODE_3631_length_764_cov_3.300156:1-764 [pilon] NODE_9543_length_344_cov_54.466368:1-344 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 244, Coverage: 42, minDepth: 11 [pilon] Confirmed 293 of 344 bases (85.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9543_length_344_cov_54.466368:1-344 [pilon] Processing NODE_8_length_6135_cov_27.538244:1-6135 [pilon] NODE_6996_length_471_cov_37.365714:1-471 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 304, Coverage: 31, minDepth: 8 [pilon] Confirmed 358 of 471 bases (76.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6996_length_471_cov_37.365714:1-471 [pilon] Processing NODE_10545_length_303_cov_16.494505:1-303 [pilon] NODE_14557_length_243_cov_9.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14557_length_243_cov_9.844262:1-243 [pilon] Processing NODE_8076_length_414_cov_20.843003:1-414 [pilon] NODE_14957_length_243_cov_6.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14957_length_243_cov_6.040984:1-243 [pilon] Processing NODE_9681_length_339_cov_11.197248:1-339 [pilon] NODE_13961_length_243_cov_14.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13961_length_243_cov_14.442623:1-243 [pilon] Processing NODE_887_length_1569_cov_11.531077:1-1569 [pilon] NODE_4188_length_695_cov_11.620209:1-695 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 166, Coverage: 17, minDepth: 5 [pilon] Confirmed 578 of 695 bases (83.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4188_length_695_cov_11.620209:1-695 [pilon] Processing NODE_9523_length_345_cov_15.214286:1-345 [pilon] NODE_3240_length_826_cov_19.985816:1-826 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 325, Coverage: 20, minDepth: 5 [pilon] Confirmed 684 of 826 bases (82.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3240_length_826_cov_19.985816:1-826 [pilon] Processing NODE_3103_length_852_cov_1.738714:1-852 [pilon] NODE_1156_length_1415_cov_12.460587:1-1415 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 414, Coverage: 20, minDepth: 5 [pilon] Confirmed 1068 of 1415 bases (75.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1156_length_1415_cov_12.460587:1-1415 [pilon] Processing NODE_1337_length_1327_cov_18.545605:1-1327 [pilon] NODE_1620_length_1210_cov_25.738292:1-1210 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 755, Coverage: 34, minDepth: 9 [pilon] Confirmed 993 of 1210 bases (82.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1620_length_1210_cov_25.738292:1-1210 [pilon] Processing NODE_8415_length_399_cov_9.658273:1-399 [pilon] NODE_9211_length_357_cov_18.588983:1-357 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 69, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 357 bases (35.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9211_length_357_cov_18.588983:1-357 [pilon] Processing NODE_7243_length_458_cov_0.706231:1-458 [pilon] NODE_14113_length_243_cov_13.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14113_length_243_cov_13.385246:1-243 [pilon] Processing NODE_14788_length_243_cov_7.811475:1-243 [pilon] NODE_11735_length_255_cov_21.313433:1-255 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 62, Coverage: 7, minDepth: 5 [pilon] Confirmed 204 of 255 bases (80.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11735_length_255_cov_21.313433:1-255 [pilon] Processing NODE_13098_length_243_cov_22.000000:1-243 [pilon] NODE_1059_length_1461_cov_25.423134:1-1461 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 873, Coverage: 52, minDepth: 13 [pilon] Confirmed 1120 of 1461 bases (76.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1059_length_1461_cov_25.423134:1-1461 [pilon] Processing NODE_9437_length_348_cov_22.361233:1-348 [pilon] NODE_7475_length_444_cov_18.693498:1-444 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 129, Coverage: 18, minDepth: 5 [pilon] Confirmed 337 of 444 bases (75.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7475_length_444_cov_18.693498:1-444 [pilon] Processing NODE_7131_length_464_cov_9.274052:1-464 [pilon] NODE_4687_length_644_cov_19.143403:1-644 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 232, Coverage: 19, minDepth: 5 [pilon] Confirmed 558 of 644 bases (86.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4687_length_644_cov_19.143403:1-644 [pilon] Processing NODE_12485_length_243_cov_29.368852:1-243 [pilon] NODE_14864_length_243_cov_7.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14864_length_243_cov_7.024590:1-243 [pilon] Processing NODE_10868_length_289_cov_15.095238:1-289 [pilon] NODE_10334_length_312_cov_14.492147:1-312 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 60, Coverage: 8, minDepth: 5 [pilon] Confirmed 213 of 312 bases (68.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10334_length_312_cov_14.492147:1-312 [pilon] Processing NODE_5015_length_617_cov_27.143145:1-617 [pilon] NODE_4450_length_666_cov_8.220183:1-666 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 157, Coverage: 18, minDepth: 5 [pilon] Confirmed 438 of 666 bases (65.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4450_length_666_cov_8.220183:1-666 [pilon] Processing NODE_14331_length_243_cov_11.614754:1-243 [pilon] NODE_9268_length_355_cov_6.594017:1-355 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 45, Coverage: 2, minDepth: 5 [pilon] Confirmed 79 of 355 bases (22.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9268_length_355_cov_6.594017:1-355 [pilon] Processing NODE_7697_length_432_cov_29.527331:1-432 [pilon] NODE_3225_length_830_cov_1.638928:1-830 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 26, Coverage: 4, minDepth: 5 [pilon] Confirmed 301 of 830 bases (36.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3225_length_830_cov_1.638928:1-830 [pilon] Processing NODE_13677_length_243_cov_16.754098:1-243 [pilon] NODE_14455_length_243_cov_10.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14455_length_243_cov_10.639344:1-243 [pilon] Processing NODE_6416_length_510_cov_0.820051:1-510 [pilon] NODE_4983_length_620_cov_2.204409:1-620 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 44, Coverage: 9, minDepth: 5 [pilon] Confirmed 437 of 620 bases (70.48%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4983_length_620_cov_2.204409:1-620 [pilon] Processing NODE_13605_length_243_cov_17.459016:1-243 [pilon] NODE_10296_length_313_cov_23.296875:1-313 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 99, Coverage: 12, minDepth: 5 [pilon] Confirmed 222 of 313 bases (70.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10296_length_313_cov_23.296875:1-313 [pilon] Processing NODE_6829_length_481_cov_21.605556:1-481 [pilon] NODE_8076_length_414_cov_20.843003:1-414 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 144, Coverage: 18, minDepth: 5 [pilon] Confirmed 310 of 414 bases (74.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8076_length_414_cov_20.843003:1-414 [pilon] Processing NODE_12_length_5818_cov_14.427769:1-5818 [pilon] NODE_13518_length_243_cov_18.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13518_length_243_cov_18.204918:1-243 [pilon] Processing NODE_5516_length_576_cov_12.789011:1-576 [pilon] NODE_13394_length_243_cov_19.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13394_length_243_cov_19.344262:1-243 [pilon] Processing NODE_500_length_1911_cov_20.091620:1-1911 [pilon] NODE_9445_length_348_cov_18.105727:1-348 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 103, Coverage: 4, minDepth: 5 [pilon] Confirmed 135 of 348 bases (38.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9445_length_348_cov_18.105727:1-348 [pilon] NODE_13348_length_243_cov_19.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13348_length_243_cov_19.852459:1-243 [pilon] Processing NODE_11397_length_267_cov_20.226027:1-267 [pilon] Processing NODE_13258_length_243_cov_20.532787:1-243 [pilon] NODE_9523_length_345_cov_15.214286:1-345 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 90, Coverage: 2, minDepth: 5 [pilon] Confirmed 89 of 345 bases (25.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9523_length_345_cov_15.214286:1-345 [pilon] Processing NODE_6870_length_480_cov_0.493036:1-480 [pilon] NODE_3924_length_724_cov_28.336650:1-724 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 458, Coverage: 26, minDepth: 7 [pilon] Confirmed 564 of 724 bases (77.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3924_length_724_cov_28.336650:1-724 [pilon] Processing NODE_1701_length_1179_cov_15.692817:1-1179 [pilon] NODE_3631_length_764_cov_3.300156:1-764 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 64, Coverage: 10, minDepth: 5 [pilon] Confirmed 590 of 764 bases (77.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3631_length_764_cov_3.300156:1-764 [pilon] Processing NODE_13060_length_243_cov_22.311475:1-243 [pilon] NODE_10545_length_303_cov_16.494505:1-303 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 64, Coverage: 10, minDepth: 5 [pilon] Confirmed 251 of 303 bases (82.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10545_length_303_cov_16.494505:1-303 [pilon] Processing NODE_14432_length_243_cov_10.803279:1-243 [pilon] NODE_9681_length_339_cov_11.197248:1-339 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 232 of 339 bases (68.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9681_length_339_cov_11.197248:1-339 [pilon] Processing NODE_5166_length_604_cov_19.107660:1-604 [pilon] NODE_887_length_1569_cov_11.531077:1-1569 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 398, Coverage: 23, minDepth: 6 [pilon] Confirmed 1288 of 1569 bases (82.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_887_length_1569_cov_11.531077:1-1569 [pilon] Processing NODE_7211_length_459_cov_24.458580:1-459 [pilon] NODE_7243_length_458_cov_0.706231:1-458 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 133 of 458 bases (29.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7243_length_458_cov_0.706231:1-458 [pilon] Processing NODE_1778_length_1154_cov_1.629235:1-1154 [pilon] NODE_3103_length_852_cov_1.738714:1-852 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 39, Coverage: 6, minDepth: 5 [pilon] Confirmed 447 of 852 bases (52.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3103_length_852_cov_1.738714:1-852 [pilon] Processing NODE_1194_length_1401_cov_7.741406:1-1401 [pilon] NODE_10868_length_289_cov_15.095238:1-289 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 57, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 289 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10868_length_289_cov_15.095238:1-289 [pilon] Processing NODE_8588_length_389_cov_15.511194:1-389 [pilon] NODE_8415_length_399_cov_9.658273:1-399 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 56, Coverage: 6, minDepth: 5 [pilon] Confirmed 195 of 399 bases (48.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8415_length_399_cov_9.658273:1-399 [pilon] Processing NODE_2054_length_1071_cov_15.011579:1-1071 [pilon] NODE_1337_length_1327_cov_18.545605:1-1327 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 594, Coverage: 50, minDepth: 13 [pilon] Confirmed 1188 of 1327 bases (89.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1337_length_1327_cov_18.545605:1-1327 [pilon] Processing NODE_3593_length_770_cov_13.734977:1-770 [pilon] NODE_14788_length_243_cov_7.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14788_length_243_cov_7.811475:1-243 [pilon] Processing NODE_4444_length_667_cov_1.379121:1-667 [pilon] NODE_13098_length_243_cov_22.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13098_length_243_cov_22.000000:1-243 [pilon] Processing NODE_9584_length_342_cov_22.171946:1-342 [pilon] NODE_8_length_6135_cov_27.538244:1-6135 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 3857, Coverage: 78, minDepth: 20 [pilon] Confirmed 5463 of 6135 bases (89.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8_length_6135_cov_27.538244:1-6135 [pilon] Processing NODE_3250_length_824_cov_7.320057:1-824 [pilon] NODE_9437_length_348_cov_22.361233:1-348 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 106, Coverage: 16, minDepth: 5 [pilon] Confirmed 247 of 348 bases (70.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9437_length_348_cov_22.361233:1-348 [pilon] Processing NODE_10742_length_296_cov_15.211429:1-296 [pilon] NODE_12485_length_243_cov_29.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12485_length_243_cov_29.368852:1-243 [pilon] Processing NODE_5012_length_617_cov_44.258065:1-617 [pilon] NODE_7131_length_464_cov_9.274052:1-464 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 63, Coverage: 2, minDepth: 5 [pilon] Confirmed 117 of 464 bases (25.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7131_length_464_cov_9.274052:1-464 [pilon] Processing NODE_11672_length_258_cov_8.510949:1-258 [pilon] NODE_6870_length_480_cov_0.493036:1-480 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 31 of 480 bases (6.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6870_length_480_cov_0.493036:1-480 [pilon] Processing NODE_10078_length_322_cov_12.850746:1-322 [pilon] NODE_12_length_5818_cov_14.427769:1-5818 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 1926, Coverage: 42, minDepth: 11 [pilon] Confirmed 5065 of 5818 bases (87.06%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12_length_5818_cov_14.427769:1-5818 [pilon] Processing NODE_14565_length_243_cov_9.778689:1-243 [pilon] NODE_14331_length_243_cov_11.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14331_length_243_cov_11.614754:1-243 [pilon] Processing NODE_1635_length_1205_cov_1.041513:1-1205 [pilon] NODE_6416_length_510_cov_0.820051:1-510 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 148 of 510 bases (29.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6416_length_510_cov_0.820051:1-510 [pilon] Processing NODE_12651_length_243_cov_26.860656:1-243 [pilon] NODE_7697_length_432_cov_29.527331:1-432 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 212, Coverage: 34, minDepth: 9 [pilon] Confirmed 367 of 432 bases (84.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7697_length_432_cov_29.527331:1-432 [pilon] Processing NODE_9899_length_330_cov_17.143541:1-330 [pilon] NODE_13605_length_243_cov_17.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13605_length_243_cov_17.459016:1-243 [pilon] Processing NODE_2179_length_1039_cov_2.047930:1-1039 [pilon] NODE_13677_length_243_cov_16.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13677_length_243_cov_16.754098:1-243 [pilon] Processing NODE_9712_length_337_cov_36.055556:1-337 [pilon] NODE_5015_length_617_cov_27.143145:1-617 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 308, Coverage: 40, minDepth: 10 [pilon] Confirmed 432 of 617 bases (70.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5015_length_617_cov_27.143145:1-617 [pilon] Processing NODE_10954_length_285_cov_29.420732:1-285 [pilon] NODE_5516_length_576_cov_12.789011:1-576 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 138, Coverage: 18, minDepth: 5 [pilon] Confirmed 503 of 576 bases (87.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5516_length_576_cov_12.789011:1-576 [pilon] Processing NODE_11580_length_261_cov_17.021429:1-261 [pilon] NODE_13258_length_243_cov_20.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13258_length_243_cov_20.532787:1-243 [pilon] Processing NODE_11687_length_257_cov_8.014706:1-257 [pilon] NODE_6829_length_481_cov_21.605556:1-481 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 174, Coverage: 14, minDepth: 5 [pilon] Confirmed 333 of 481 bases (69.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6829_length_481_cov_21.605556:1-481 [pilon] Processing NODE_11156_length_277_cov_16.211538:1-277 [pilon] NODE_13060_length_243_cov_22.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13060_length_243_cov_22.311475:1-243 [pilon] Processing NODE_9329_length_353_cov_26.228448:1-353 [pilon] NODE_14432_length_243_cov_10.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14432_length_243_cov_10.803279:1-243 [pilon] Processing NODE_5968_length_543_cov_26.618483:1-543 [pilon] NODE_11397_length_267_cov_20.226027:1-267 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 62, Coverage: 6, minDepth: 5 [pilon] Confirmed 197 of 267 bases (73.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11397_length_267_cov_20.226027:1-267 [pilon] Processing NODE_913_length_1548_cov_22.002803:1-1548 [pilon] NODE_8588_length_389_cov_15.511194:1-389 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 82, Coverage: 7, minDepth: 5 [pilon] Confirmed 216 of 389 bases (55.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8588_length_389_cov_15.511194:1-389 [pilon] Processing NODE_14779_length_243_cov_7.942623:1-243 [pilon] NODE_500_length_1911_cov_20.091620:1-1911 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 797, Coverage: 40, minDepth: 10 [pilon] Confirmed 1712 of 1911 bases (89.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_500_length_1911_cov_20.091620:1-1911 [pilon] Processing NODE_391_length_2061_cov_22.628866:1-2061 [pilon] NODE_1701_length_1179_cov_15.692817:1-1179 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 529, Coverage: 45, minDepth: 11 [pilon] Confirmed 1040 of 1179 bases (88.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1701_length_1179_cov_15.692817:1-1179 [pilon] Processing NODE_11204_length_276_cov_12.503226:1-276 [pilon] NODE_5166_length_604_cov_19.107660:1-604 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 228, Coverage: 16, minDepth: 5 [pilon] Confirmed 459 of 604 bases (75.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5166_length_604_cov_19.107660:1-604 [pilon] Processing NODE_15059_length_239_cov_30.677966:1-239 [pilon] NODE_7211_length_459_cov_24.458580:1-459 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 169, Coverage: 25, minDepth: 6 [pilon] Confirmed 355 of 459 bases (77.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7211_length_459_cov_24.458580:1-459 [pilon] Processing NODE_1541_length_1243_cov_24.587344:1-1243 [pilon] NODE_1778_length_1154_cov_1.629235:1-1154 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 592 of 1154 bases (51.30%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1778_length_1154_cov_1.629235:1-1154 [pilon] Processing NODE_3543_length_778_cov_11.659056:1-778 [pilon] NODE_10078_length_322_cov_12.850746:1-322 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 58, Coverage: 3, minDepth: 5 [pilon] Confirmed 91 of 322 bases (28.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10078_length_322_cov_12.850746:1-322 [pilon] Processing NODE_8073_length_414_cov_22.986348:1-414 [pilon] NODE_4444_length_667_cov_1.379121:1-667 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 37, Coverage: 7, minDepth: 5 [pilon] Confirmed 469 of 667 bases (70.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4444_length_667_cov_1.379121:1-667 [pilon] Processing NODE_12096_length_244_cov_9.552846:1-244 [pilon] NODE_1194_length_1401_cov_7.741406:1-1401 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 232, Coverage: 21, minDepth: 5 [pilon] Confirmed 965 of 1401 bases (68.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1194_length_1401_cov_7.741406:1-1401 [pilon] Processing NODE_7053_length_468_cov_1.296830:1-468 [pilon] NODE_2054_length_1071_cov_15.011579:1-1071 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 351, Coverage: 35, minDepth: 9 [pilon] Confirmed 881 of 1071 bases (82.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2054_length_1071_cov_15.011579:1-1071 [pilon] Processing NODE_2565_length_954_cov_0.960384:1-954 [pilon] NODE_3593_length_770_cov_13.734977:1-770 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 213, Coverage: 31, minDepth: 8 [pilon] Confirmed 537 of 770 bases (69.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3593_length_770_cov_13.734977:1-770 [pilon] Processing NODE_5072_length_613_cov_0.955285:1-613 [pilon] NODE_14565_length_243_cov_9.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14565_length_243_cov_9.778689:1-243 [pilon] Processing NODE_9889_length_330_cov_22.191388:1-330 [pilon] NODE_3250_length_824_cov_7.320057:1-824 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 136, Coverage: 21, minDepth: 5 [pilon] Confirmed 531 of 824 bases (64.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3250_length_824_cov_7.320057:1-824 [pilon] Processing NODE_3520_length_781_cov_1.390909:1-781 [pilon] NODE_10742_length_296_cov_15.211429:1-296 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 61, Coverage: 2, minDepth: 5 [pilon] Confirmed 72 of 296 bases (24.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10742_length_296_cov_15.211429:1-296 [pilon] Processing NODE_4143_length_699_cov_31.873702:1-699 [pilon] NODE_9584_length_342_cov_22.171946:1-342 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 122, Coverage: 8, minDepth: 5 [pilon] Confirmed 226 of 342 bases (66.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9584_length_342_cov_22.171946:1-342 [pilon] Processing NODE_8559_length_390_cov_22.182156:1-390 [pilon] NODE_11672_length_258_cov_8.510949:1-258 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11672_length_258_cov_8.510949:1-258 [pilon] Processing NODE_7452_length_446_cov_1.353846:1-446 [pilon] NODE_5012_length_617_cov_44.258065:1-617 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 475, Coverage: 68, minDepth: 17 [pilon] Confirmed 529 of 617 bases (85.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5012_length_617_cov_44.258065:1-617 [pilon] Processing NODE_12076_length_244_cov_28.146341:1-244 [pilon] NODE_14779_length_243_cov_7.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14779_length_243_cov_7.942623:1-243 [pilon] Processing NODE_11555_length_261_cov_34.500000:1-261 [pilon] NODE_12651_length_243_cov_26.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12651_length_243_cov_26.860656:1-243 [pilon] Processing NODE_4706_length_643_cov_1.017241:1-643 [pilon] NODE_2179_length_1039_cov_2.047930:1-1039 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 63, Coverage: 7, minDepth: 5 [pilon] Confirmed 674 of 1039 bases (64.87%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2179_length_1039_cov_2.047930:1-1039 [pilon] Processing NODE_4000_length_715_cov_25.370370:1-715 [pilon] NODE_9899_length_330_cov_17.143541:1-330 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 330 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9899_length_330_cov_17.143541:1-330 [pilon] Processing NODE_12324_length_243_cov_32.655738:1-243 [pilon] NODE_1635_length_1205_cov_1.041513:1-1205 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 35, Coverage: 4, minDepth: 5 [pilon] Confirmed 423 of 1205 bases (35.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1635_length_1205_cov_1.041513:1-1205 [pilon] Processing NODE_7821_length_426_cov_17.331148:1-426 [pilon] NODE_9712_length_337_cov_36.055556:1-337 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 181, Coverage: 7, minDepth: 5 [pilon] Confirmed 154 of 337 bases (45.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9712_length_337_cov_36.055556:1-337 [pilon] Processing NODE_5195_length_602_cov_19.357588:1-602 [pilon] NODE_11580_length_261_cov_17.021429:1-261 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 47, Coverage: 3, minDepth: 5 [pilon] Confirmed 113 of 261 bases (43.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11580_length_261_cov_17.021429:1-261 [pilon] Processing NODE_1666_length_1195_cov_17.231844:1-1195 [pilon] NODE_11687_length_257_cov_8.014706:1-257 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 257 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11687_length_257_cov_8.014706:1-257 [pilon] Processing NODE_636_length_1765_cov_18.261557:1-1765 [pilon] NODE_11156_length_277_cov_16.211538:1-277 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 65, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 277 bases (46.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11156_length_277_cov_16.211538:1-277 [pilon] Processing NODE_2228_length_1026_cov_4.552486:1-1026 [pilon] NODE_10954_length_285_cov_29.420732:1-285 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 132, Coverage: 11, minDepth: 5 [pilon] Confirmed 206 of 285 bases (72.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10954_length_285_cov_29.420732:1-285 [pilon] Processing NODE_4157_length_698_cov_2.459272:1-698 [pilon] NODE_11204_length_276_cov_12.503226:1-276 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 33, Coverage: 4, minDepth: 5 [pilon] Confirmed 106 of 276 bases (38.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11204_length_276_cov_12.503226:1-276 [pilon] Processing NODE_7327_length_452_cov_11.564955:1-452 [pilon] NODE_9329_length_353_cov_26.228448:1-353 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 146, Coverage: 25, minDepth: 6 [pilon] Confirmed 323 of 353 bases (91.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9329_length_353_cov_26.228448:1-353 [pilon] Processing NODE_7660_length_435_cov_1.506369:1-435 [pilon] NODE_7053_length_468_cov_1.296830:1-468 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 171 of 468 bases (36.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7053_length_468_cov_1.296830:1-468 [pilon] Processing NODE_8675_length_384_cov_11.615970:1-384 [pilon] NODE_5968_length_543_cov_26.618483:1-543 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 277, Coverage: 34, minDepth: 9 [pilon] Confirmed 442 of 543 bases (81.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5968_length_543_cov_26.618483:1-543 [pilon] Processing NODE_9292_length_354_cov_18.060086:1-354 [pilon] NODE_913_length_1548_cov_22.002803:1-1548 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 729, Coverage: 41, minDepth: 10 [pilon] Confirmed 1326 of 1548 bases (85.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_913_length_1548_cov_22.002803:1-1548 [pilon] Processing NODE_8672_length_384_cov_12.711027:1-384 [pilon] NODE_15059_length_239_cov_30.677966:1-239 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 82, Coverage: 7, minDepth: 5 [pilon] Confirmed 155 of 239 bases (64.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15059_length_239_cov_30.677966:1-239 [pilon] Processing NODE_11547_length_262_cov_15.198582:1-262 [pilon] NODE_391_length_2061_cov_22.628866:1-2061 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 1091, Coverage: 60, minDepth: 15 [pilon] Confirmed 1815 of 2061 bases (88.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_391_length_2061_cov_22.628866:1-2061 [pilon] Processing NODE_2619_length_942_cov_22.434836:1-942 [pilon] NODE_2565_length_954_cov_0.960384:1-954 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 18, Coverage: 2, minDepth: 5 [pilon] Confirmed 84 of 954 bases (8.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2565_length_954_cov_0.960384:1-954 [pilon] Processing NODE_5541_length_574_cov_20.593819:1-574 [pilon] NODE_3543_length_778_cov_11.659056:1-778 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 186, Coverage: 26, minDepth: 7 [pilon] Confirmed 649 of 778 bases (83.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3543_length_778_cov_11.659056:1-778 [pilon] Processing NODE_10348_length_312_cov_5.424084:1-312 [pilon] NODE_1541_length_1243_cov_24.587344:1-1243 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 629, Coverage: 66, minDepth: 17 [pilon] Confirmed 1036 of 1243 bases (83.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1541_length_1243_cov_24.587344:1-1243 [pilon] Processing NODE_13845_length_243_cov_15.336066:1-243 [pilon] NODE_8073_length_414_cov_22.986348:1-414 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 119, Coverage: 15, minDepth: 5 [pilon] Confirmed 299 of 414 bases (72.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8073_length_414_cov_22.986348:1-414 [pilon] Processing NODE_9420_length_349_cov_13.254386:1-349 [pilon] NODE_12096_length_244_cov_9.552846:1-244 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12096_length_244_cov_9.552846:1-244 [pilon] Processing NODE_2863_length_900_cov_8.727856:1-900 [pilon] NODE_11555_length_261_cov_34.500000:1-261 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 92, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 261 bases (49.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11555_length_261_cov_34.500000:1-261 [pilon] Processing NODE_1489_length_1266_cov_2.175546:1-1266 [pilon] NODE_4706_length_643_cov_1.017241:1-643 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 20, Coverage: 3, minDepth: 5 [pilon] Confirmed 200 of 643 bases (31.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4706_length_643_cov_1.017241:1-643 [pilon] Processing NODE_9177_length_358_cov_18.628692:1-358 [pilon] NODE_5072_length_613_cov_0.955285:1-613 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 125 of 613 bases (20.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5072_length_613_cov_0.955285:1-613 [pilon] Processing NODE_6589_length_498_cov_1.530504:1-498 [pilon] NODE_3520_length_781_cov_1.390909:1-781 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 26, Coverage: 4, minDepth: 5 [pilon] Confirmed 289 of 781 bases (37.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3520_length_781_cov_1.390909:1-781 [pilon] Processing NODE_6503_length_503_cov_31.937173:1-503 [pilon] NODE_9889_length_330_cov_22.191388:1-330 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 94, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 330 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9889_length_330_cov_22.191388:1-330 [pilon] Processing NODE_128_length_2835_cov_3.148489:1-2835 [pilon] NODE_8559_length_390_cov_22.182156:1-390 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 121, Coverage: 20, minDepth: 5 [pilon] Confirmed 274 of 390 bases (70.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8559_length_390_cov_22.182156:1-390 [pilon] Processing NODE_14778_length_243_cov_7.942623:1-243 [pilon] NODE_4143_length_699_cov_31.873702:1-699 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 423, Coverage: 62, minDepth: 16 [pilon] Confirmed 646 of 699 bases (92.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4143_length_699_cov_31.873702:1-699 [pilon] Processing NODE_11937_length_248_cov_20.377953:1-248 [pilon] NODE_7452_length_446_cov_1.353846:1-446 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 16, Coverage: 5, minDepth: 5 [pilon] Confirmed 204 of 446 bases (45.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7452_length_446_cov_1.353846:1-446 [pilon] Processing NODE_1483_length_1270_cov_1.798956:1-1270 [pilon] NODE_12076_length_244_cov_28.146341:1-244 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 86, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12076_length_244_cov_28.146341:1-244 [pilon] Processing NODE_14805_length_243_cov_7.680328:1-243 [pilon] NODE_12324_length_243_cov_32.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 79, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12324_length_243_cov_32.655738:1-243 [pilon] Processing NODE_15042_length_242_cov_2.404959:1-242 [pilon] NODE_8675_length_384_cov_11.615970:1-384 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 384 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8675_length_384_cov_11.615970:1-384 [pilon] Processing NODE_2223_length_1028_cov_10.703418:1-1028 [pilon] NODE_4000_length_715_cov_25.370370:1-715 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 341, Coverage: 40, minDepth: 10 [pilon] Confirmed 648 of 715 bases (90.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4000_length_715_cov_25.370370:1-715 [pilon] Processing NODE_10230_length_315_cov_29.701031:1-315 [pilon] NODE_7660_length_435_cov_1.506369:1-435 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 12 of 435 bases (2.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7660_length_435_cov_1.506369:1-435 [pilon] Processing NODE_7972_length_419_cov_35.567114:1-419 [pilon] NODE_5195_length_602_cov_19.357588:1-602 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 209, Coverage: 27, minDepth: 7 [pilon] Confirmed 486 of 602 bases (80.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5195_length_602_cov_19.357588:1-602 [pilon] Processing NODE_9360_length_351_cov_26.552174:1-351 [pilon] NODE_7821_length_426_cov_17.331148:1-426 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 129, Coverage: 7, minDepth: 5 [pilon] Confirmed 178 of 426 bases (41.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7821_length_426_cov_17.331148:1-426 [pilon] Processing NODE_14438_length_243_cov_10.754098:1-243 [pilon] NODE_11547_length_262_cov_15.198582:1-262 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 47, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 262 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11547_length_262_cov_15.198582:1-262 [pilon] Processing NODE_9071_length_363_cov_16.512397:1-363 [pilon] NODE_7327_length_452_cov_11.564955:1-452 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 107, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 452 bases (28.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7327_length_452_cov_11.564955:1-452 [pilon] Processing NODE_4990_length_619_cov_18.574297:1-619 [pilon] NODE_2228_length_1026_cov_4.552486:1-1026 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 98, Coverage: 12, minDepth: 5 [pilon] Confirmed 825 of 1026 bases (80.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2228_length_1026_cov_4.552486:1-1026 [pilon] Processing NODE_5331_length_590_cov_23.678038:1-590 [pilon] NODE_4157_length_698_cov_2.459272:1-698 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 468 of 698 bases (67.05%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4157_length_698_cov_2.459272:1-698 [pilon] Processing NODE_1486_length_1268_cov_2.286835:1-1268 [pilon] NODE_8672_length_384_cov_12.711027:1-384 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 78, Coverage: 2, minDepth: 5 [pilon] Confirmed 94 of 384 bases (24.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8672_length_384_cov_12.711027:1-384 [pilon] Processing NODE_9101_length_361_cov_23.979167:1-361 [pilon] NODE_9292_length_354_cov_18.060086:1-354 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 73, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 354 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9292_length_354_cov_18.060086:1-354 [pilon] Processing NODE_9914_length_330_cov_6.693780:1-330 [pilon] NODE_10348_length_312_cov_5.424084:1-312 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 23, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 312 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10348_length_312_cov_5.424084:1-312 [pilon] Processing NODE_2283_length_1014_cov_28.019037:1-1014 [pilon] NODE_9177_length_358_cov_18.628692:1-358 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 72, Coverage: 4, minDepth: 5 [pilon] Confirmed 136 of 358 bases (37.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9177_length_358_cov_18.628692:1-358 [pilon] Processing NODE_9679_length_339_cov_12.316514:1-339 [pilon] NODE_2619_length_942_cov_22.434836:1-942 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 427, Coverage: 48, minDepth: 12 [pilon] Confirmed 783 of 942 bases (83.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2619_length_942_cov_22.434836:1-942 [pilon] Processing NODE_8972_length_368_cov_9.939271:1-368 [pilon] NODE_1489_length_1266_cov_2.175546:1-1266 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 664 of 1266 bases (52.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1489_length_1266_cov_2.175546:1-1266 [pilon] Processing NODE_11785_length_253_cov_28.704545:1-253 [pilon] NODE_5541_length_574_cov_20.593819:1-574 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 237, Coverage: 25, minDepth: 6 [pilon] Confirmed 429 of 574 bases (74.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5541_length_574_cov_20.593819:1-574 [pilon] Processing NODE_1498_length_1259_cov_15.577329:1-1259 [pilon] NODE_9420_length_349_cov_13.254386:1-349 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 67, Coverage: 8, minDepth: 5 [pilon] Confirmed 224 of 349 bases (64.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9420_length_349_cov_13.254386:1-349 [pilon] Processing NODE_2173_length_1040_cov_13.883569:1-1040 [pilon] NODE_1666_length_1195_cov_17.231844:1-1195 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 447, Coverage: 37, minDepth: 9 [pilon] Confirmed 1076 of 1195 bases (90.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1666_length_1195_cov_17.231844:1-1195 [pilon] Processing NODE_3554_length_777_cov_2.644817:1-777 [pilon] NODE_2863_length_900_cov_8.727856:1-900 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 173, Coverage: 12, minDepth: 5 [pilon] Confirmed 466 of 900 bases (51.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2863_length_900_cov_8.727856:1-900 [pilon] Processing NODE_2919_length_889_cov_19.101562:1-889 [pilon] NODE_13845_length_243_cov_15.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13845_length_243_cov_15.336066:1-243 [pilon] Processing NODE_8486_length_395_cov_7.916058:1-395 [pilon] NODE_6589_length_498_cov_1.530504:1-498 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 255 of 498 bases (51.20%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6589_length_498_cov_1.530504:1-498 [pilon] Processing NODE_3706_length_753_cov_26.319620:1-753 [pilon] NODE_1483_length_1270_cov_1.798956:1-1270 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 76, Coverage: 8, minDepth: 5 [pilon] Confirmed 862 of 1270 bases (67.87%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1483_length_1270_cov_1.798956:1-1270 [pilon] Processing NODE_1296_length_1342_cov_4.847666:1-1342 [pilon] NODE_636_length_1765_cov_18.261557:1-1765 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 687, Coverage: 48, minDepth: 12 [pilon] Confirmed 1529 of 1765 bases (86.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_636_length_1765_cov_18.261557:1-1765 [pilon] Processing NODE_7799_length_427_cov_68.127451:1-427 [pilon] NODE_2223_length_1028_cov_10.703418:1-1028 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 244, Coverage: 24, minDepth: 6 [pilon] Confirmed 960 of 1028 bases (93.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2223_length_1028_cov_10.703418:1-1028 [pilon] Processing NODE_3181_length_835_cov_2.592437:1-835 [pilon] NODE_11937_length_248_cov_20.377953:1-248 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 49, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 248 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11937_length_248_cov_20.377953:1-248 [pilon] NODE_14778_length_243_cov_7.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_5729_length_561_cov_1.068182:1-561 [pilon] Finished processing NODE_14778_length_243_cov_7.942623:1-243 [pilon] Processing NODE_12373_length_243_cov_31.557377:1-243 [pilon] NODE_128_length_2835_cov_3.148489:1-2835 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 221, Coverage: 10, minDepth: 5 [pilon] Confirmed 2270 of 2835 bases (80.07%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_128_length_2835_cov_3.148489:1-2835 [pilon] Processing NODE_5454_length_580_cov_26.220044:1-580 [pilon] NODE_10230_length_315_cov_29.701031:1-315 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 114, Coverage: 10, minDepth: 5 [pilon] Confirmed 170 of 315 bases (53.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10230_length_315_cov_29.701031:1-315 [pilon] Processing NODE_4034_length_711_cov_32.081356:1-711 [pilon] NODE_6503_length_503_cov_31.937173:1-503 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 342, Coverage: 59, minDepth: 15 [pilon] Confirmed 385 of 503 bases (76.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6503_length_503_cov_31.937173:1-503 [pilon] Processing NODE_12401_length_243_cov_30.852459:1-243 [pilon] NODE_7972_length_419_cov_35.567114:1-419 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 239, Coverage: 42, minDepth: 11 [pilon] Confirmed 302 of 419 bases (72.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7972_length_419_cov_35.567114:1-419 [pilon] Processing NODE_12661_length_243_cov_26.696721:1-243 [pilon] NODE_15042_length_242_cov_2.404959:1-242 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 16, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 242 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15042_length_242_cov_2.404959:1-242 [pilon] Processing NODE_9480_length_347_cov_6.632743:1-347 [pilon] NODE_14805_length_243_cov_7.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14805_length_243_cov_7.680328:1-243 [pilon] Processing NODE_8340_length_403_cov_0.737589:1-403 [pilon] NODE_9071_length_363_cov_16.512397:1-363 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 91, Coverage: 13, minDepth: 5 [pilon] Confirmed 262 of 363 bases (72.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9071_length_363_cov_16.512397:1-363 [pilon] Processing NODE_2293_length_1012_cov_20.764310:1-1012 [pilon] NODE_9360_length_351_cov_26.552174:1-351 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 131, Coverage: 14, minDepth: 5 [pilon] Confirmed 241 of 351 bases (68.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9360_length_351_cov_26.552174:1-351 [pilon] Processing NODE_4659_length_647_cov_27.488593:1-647 [pilon] NODE_14438_length_243_cov_10.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14438_length_243_cov_10.754098:1-243 [pilon] Processing NODE_8662_length_384_cov_17.920152:1-384 [pilon] NODE_4990_length_619_cov_18.574297:1-619 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 210, Coverage: 24, minDepth: 6 [pilon] Confirmed 478 of 619 bases (77.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4990_length_619_cov_18.574297:1-619 [pilon] Processing NODE_5484_length_579_cov_1.213974:1-579 [pilon] NODE_1486_length_1268_cov_2.286835:1-1268 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 71, Coverage: 7, minDepth: 5 [pilon] Confirmed 935 of 1268 bases (73.74%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1486_length_1268_cov_2.286835:1-1268 [pilon] Processing NODE_6481_length_505_cov_1.914062:1-505 [pilon] NODE_5331_length_590_cov_23.678038:1-590 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 237, Coverage: 38, minDepth: 10 [pilon] Confirmed 520 of 590 bases (88.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5331_length_590_cov_23.678038:1-590 [pilon] Processing NODE_10601_length_300_cov_40.687151:1-300 [pilon] NODE_8972_length_368_cov_9.939271:1-368 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 61, Coverage: 10, minDepth: 5 [pilon] Confirmed 248 of 368 bases (67.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8972_length_368_cov_9.939271:1-368 [pilon] Processing NODE_14516_length_243_cov_10.172131:1-243 [pilon] NODE_2173_length_1040_cov_13.883569:1-1040 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 279, Coverage: 34, minDepth: 9 [pilon] Confirmed 822 of 1040 bases (79.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2173_length_1040_cov_13.883569:1-1040 [pilon] Processing NODE_10265_length_315_cov_7.963918:1-315 [pilon] NODE_9914_length_330_cov_6.693780:1-330 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 31, Coverage: 5, minDepth: 5 [pilon] Confirmed 148 of 330 bases (44.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9914_length_330_cov_6.693780:1-330 [pilon] Processing NODE_5765_length_558_cov_16.205950:1-558 [pilon] NODE_9101_length_361_cov_23.979167:1-361 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 93, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 361 bases (34.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9101_length_361_cov_23.979167:1-361 [pilon] Processing NODE_12315_length_243_cov_32.868852:1-243 [pilon] NODE_2283_length_1014_cov_28.019037:1-1014 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 582, Coverage: 48, minDepth: 12 [pilon] Confirmed 868 of 1014 bases (85.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2283_length_1014_cov_28.019037:1-1014 [pilon] Processing NODE_11978_length_246_cov_27.944000:1-246 [pilon] NODE_11785_length_253_cov_28.704545:1-253 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 81, Coverage: 11, minDepth: 5 [pilon] Confirmed 208 of 253 bases (82.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11785_length_253_cov_28.704545:1-253 [pilon] Processing NODE_11511_length_263_cov_26.000000:1-263 [pilon] NODE_9679_length_339_cov_12.316514:1-339 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 68, Coverage: 8, minDepth: 5 [pilon] Confirmed 232 of 339 bases (68.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9679_length_339_cov_12.316514:1-339 [pilon] Processing NODE_13600_length_243_cov_17.500000:1-243 [pilon] NODE_4034_length_711_cov_32.081356:1-711 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 438, Coverage: 53, minDepth: 13 [pilon] Confirmed 621 of 711 bases (87.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4034_length_711_cov_32.081356:1-711 [pilon] Processing NODE_7249_length_457_cov_13.434524:1-457 [pilon] NODE_1498_length_1259_cov_15.577329:1-1259 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 443, Coverage: 35, minDepth: 9 [pilon] Confirmed 1062 of 1259 bases (84.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1498_length_1259_cov_15.577329:1-1259 [pilon] Processing NODE_12486_length_243_cov_29.368852:1-243 [pilon] NODE_3554_length_777_cov_2.644817:1-777 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 47, Coverage: 8, minDepth: 5 [pilon] Confirmed 638 of 777 bases (82.11%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3554_length_777_cov_2.644817:1-777 [pilon] Processing NODE_2788_length_911_cov_2.517722:1-911 [pilon] NODE_1296_length_1342_cov_4.847666:1-1342 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 172, Coverage: 16, minDepth: 5 [pilon] Confirmed 862 of 1342 bases (64.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1296_length_1342_cov_4.847666:1-1342 [pilon] Processing NODE_198_length_2509_cov_12.711055:1-2509 [pilon] NODE_2919_length_889_cov_19.101562:1-889 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 417, Coverage: 52, minDepth: 13 [pilon] Confirmed 746 of 889 bases (83.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2919_length_889_cov_19.101562:1-889 [pilon] Processing NODE_4164_length_697_cov_17.493056:1-697 [pilon] NODE_5729_length_561_cov_1.068182:1-561 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 114 of 561 bases (20.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5729_length_561_cov_1.068182:1-561 [pilon] Processing NODE_13991_length_243_cov_14.229508:1-243 [pilon] NODE_12401_length_243_cov_30.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 83, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12401_length_243_cov_30.852459:1-243 [pilon] Processing NODE_4818_length_633_cov_11.464844:1-633 [pilon] NODE_7799_length_427_cov_68.127451:1-427 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 478, Coverage: 74, minDepth: 19 [pilon] Confirmed 372 of 427 bases (87.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7799_length_427_cov_68.127451:1-427 [pilon] Processing NODE_1846_length_1130_cov_30.172448:1-1130 [pilon] NODE_8486_length_395_cov_7.916058:1-395 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 56, Coverage: 13, minDepth: 5 [pilon] Confirmed 322 of 395 bases (81.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8486_length_395_cov_7.916058:1-395 [pilon] Processing NODE_5591_length_571_cov_8.886667:1-571 [pilon] NODE_3706_length_753_cov_26.319620:1-753 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 347, Coverage: 48, minDepth: 12 [pilon] Confirmed 576 of 753 bases (76.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3706_length_753_cov_26.319620:1-753 [pilon] Processing NODE_10064_length_323_cov_8.965347:1-323 [pilon] NODE_12661_length_243_cov_26.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12661_length_243_cov_26.696721:1-243 [pilon] Processing NODE_13364_length_243_cov_19.704918:1-243 [pilon] NODE_3181_length_835_cov_2.592437:1-835 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 45, Coverage: 7, minDepth: 5 [pilon] Confirmed 454 of 835 bases (54.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3181_length_835_cov_2.592437:1-835 [pilon] Processing NODE_9499_length_345_cov_29.433036:1-345 [pilon] NODE_5454_length_580_cov_26.220044:1-580 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 241, Coverage: 38, minDepth: 10 [pilon] Confirmed 444 of 580 bases (76.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5454_length_580_cov_26.220044:1-580 [pilon] Processing NODE_14820_length_243_cov_7.500000:1-243 [pilon] NODE_12373_length_243_cov_31.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 93, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12373_length_243_cov_31.557377:1-243 [pilon] Processing NODE_793_length_1629_cov_19.566976:1-1629 [pilon] NODE_9480_length_347_cov_6.632743:1-347 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 139 of 347 bases (40.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9480_length_347_cov_6.632743:1-347 [pilon] Processing NODE_2296_length_1012_cov_2.744108:1-1012 [pilon] NODE_14516_length_243_cov_10.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14516_length_243_cov_10.172131:1-243 [pilon] Processing NODE_326_length_2173_cov_22.433723:1-2173 [pilon] NODE_8340_length_403_cov_0.737589:1-403 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 403 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8340_length_403_cov_0.737589:1-403 [pilon] Processing NODE_6144_length_528_cov_36.304668:1-528 [pilon] NODE_4659_length_647_cov_27.488593:1-647 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 321, Coverage: 42, minDepth: 11 [pilon] Confirmed 478 of 647 bases (73.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4659_length_647_cov_27.488593:1-647 [pilon] Processing NODE_11720_length_255_cov_25.582090:1-255 [pilon] NODE_2293_length_1012_cov_20.764310:1-1012 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 403, Coverage: 42, minDepth: 11 [pilon] Confirmed 718 of 1012 bases (70.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2293_length_1012_cov_20.764310:1-1012 [pilon] Processing NODE_31_length_4494_cov_18.971873:1-4494 [pilon] NODE_5484_length_579_cov_1.213974:1-579 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 207 of 579 bases (35.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5484_length_579_cov_1.213974:1-579 [pilon] Processing NODE_7878_length_423_cov_47.476821:1-423 [pilon] NODE_10265_length_315_cov_7.963918:1-315 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 35, Coverage: 3, minDepth: 5 [pilon] Confirmed 121 of 315 bases (38.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10265_length_315_cov_7.963918:1-315 [pilon] Processing NODE_15251_length_126_cov_5.800000:1-126 [pilon] NODE_11511_length_263_cov_26.000000:1-263 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 87, Coverage: 7, minDepth: 5 [pilon] Confirmed 190 of 263 bases (72.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11511_length_263_cov_26.000000:1-263 [pilon] Processing NODE_9109_length_361_cov_13.000000:1-361 [pilon] NODE_8662_length_384_cov_17.920152:1-384 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 110, Coverage: 13, minDepth: 5 [pilon] Confirmed 267 of 384 bases (69.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8662_length_384_cov_17.920152:1-384 [pilon] Processing NODE_6862_length_480_cov_12.949861:1-480 [pilon] NODE_10601_length_300_cov_40.687151:1-300 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 169, Coverage: 25, minDepth: 6 [pilon] Confirmed 265 of 300 bases (88.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10601_length_300_cov_40.687151:1-300 [pilon] Processing NODE_6248_length_521_cov_7.607500:1-521 [pilon] NODE_12486_length_243_cov_29.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12486_length_243_cov_29.368852:1-243 [pilon] Processing NODE_3947_length_721_cov_2.911667:1-721 [pilon] NODE_12315_length_243_cov_32.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12315_length_243_cov_32.868852:1-243 [pilon] Processing NODE_11889_length_249_cov_23.585938:1-249 [pilon] NODE_6481_length_505_cov_1.914062:1-505 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 23, Coverage: 6, minDepth: 5 [pilon] Confirmed 328 of 505 bases (64.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6481_length_505_cov_1.914062:1-505 [pilon] Processing NODE_5657_length_566_cov_13.622472:1-566 [pilon] NODE_5765_length_558_cov_16.205950:1-558 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 277, Coverage: 45, minDepth: 11 [pilon] Confirmed 388 of 558 bases (69.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5765_length_558_cov_16.205950:1-558 [pilon] Processing NODE_9436_length_348_cov_22.797357:1-348 [pilon] NODE_11978_length_246_cov_27.944000:1-246 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 75, Coverage: 4, minDepth: 5 [pilon] Confirmed 128 of 246 bases (52.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11978_length_246_cov_27.944000:1-246 [pilon] Processing NODE_15092_length_225_cov_10.451923:1-225 [pilon] NODE_7249_length_457_cov_13.434524:1-457 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 121, Coverage: 6, minDepth: 5 [pilon] Confirmed 280 of 457 bases (61.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7249_length_457_cov_13.434524:1-457 [pilon] Processing NODE_8095_length_414_cov_1.187713:1-414 [pilon] NODE_13600_length_243_cov_17.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13600_length_243_cov_17.500000:1-243 [pilon] Processing NODE_6010_length_540_cov_10.687351:1-540 [pilon] NODE_13991_length_243_cov_14.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13991_length_243_cov_14.229508:1-243 [pilon] Processing NODE_5185_length_603_cov_5.985477:1-603 [pilon] NODE_2788_length_911_cov_2.517722:1-911 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 51, Coverage: 7, minDepth: 5 [pilon] Confirmed 662 of 911 bases (72.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2788_length_911_cov_2.517722:1-911 [pilon] Processing NODE_5969_length_543_cov_23.417062:1-543 [pilon] NODE_326_length_2173_cov_22.433723:1-2173 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 1040, Coverage: 41, minDepth: 10 [pilon] Confirmed 1685 of 2173 bases (77.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_326_length_2173_cov_22.433723:1-2173 [pilon] Processing NODE_2372_length_997_cov_15.375571:1-997 [pilon] NODE_1846_length_1130_cov_30.172448:1-1130 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 726, Coverage: 69, minDepth: 17 [pilon] Confirmed 957 of 1130 bases (84.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1846_length_1130_cov_30.172448:1-1130 [pilon] Processing NODE_6150_length_528_cov_18.110565:1-528 [pilon] NODE_10064_length_323_cov_8.965347:1-323 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 323 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10064_length_323_cov_8.965347:1-323 [pilon] Processing NODE_10573_length_302_cov_22.707182:1-302 [pilon] NODE_198_length_2509_cov_12.711055:1-2509 log: [pilon] NODE_4164_length_697_cov_17.493056:1-697 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 227, Coverage: 31, minDepth: 8 [pilon] Confirmed 481 of 697 bases (69.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 795, Coverage: 35, minDepth: 9 [pilon] Confirmed 2282 of 2509 bases (90.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4164_length_697_cov_17.493056:1-697 [pilon] Finished processing NODE_198_length_2509_cov_12.711055:1-2509 [pilon] Processing NODE_15031_length_243_cov_5.073770:1-243 [pilon] Processing NODE_4416_length_670_cov_2.540984:1-670 [pilon] NODE_9499_length_345_cov_29.433036:1-345 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 145, Coverage: 15, minDepth: 5 [pilon] Confirmed 257 of 345 bases (74.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9499_length_345_cov_29.433036:1-345 [pilon] Processing NODE_13857_length_243_cov_15.254098:1-243 [pilon] NODE_4818_length_633_cov_11.464844:1-633 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 142, Coverage: 15, minDepth: 5 [pilon] Confirmed 485 of 633 bases (76.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4818_length_633_cov_11.464844:1-633 [pilon] Processing NODE_12829_length_243_cov_24.778689:1-243 [pilon] NODE_5591_length_571_cov_8.886667:1-571 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 129, Coverage: 21, minDepth: 5 [pilon] Confirmed 426 of 571 bases (74.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5591_length_571_cov_8.886667:1-571 [pilon] Processing NODE_11443_length_265_cov_24.798611:1-265 [pilon] NODE_13364_length_243_cov_19.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13364_length_243_cov_19.704918:1-243 [pilon] Processing NODE_172_length_2590_cov_2.557311:1-2590 [pilon] NODE_14820_length_243_cov_7.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14820_length_243_cov_7.500000:1-243 [pilon] Processing NODE_9840_length_333_cov_10.349057:1-333 [pilon] NODE_2296_length_1012_cov_2.744108:1-1012 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 71, Coverage: 9, minDepth: 5 [pilon] Confirmed 840 of 1012 bases (83.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2296_length_1012_cov_2.744108:1-1012 [pilon] Processing NODE_10437_length_306_cov_36.145946:1-306 [pilon] NODE_793_length_1629_cov_19.566976:1-1629 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 807, Coverage: 51, minDepth: 13 [pilon] Confirmed 1345 of 1629 bases (82.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_793_length_1629_cov_19.566976:1-1629 [pilon] Processing NODE_10762_length_294_cov_146.063584:1-294 [pilon] NODE_11720_length_255_cov_25.582090:1-255 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 76, Coverage: 8, minDepth: 5 [pilon] Confirmed 204 of 255 bases (80.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11720_length_255_cov_25.582090:1-255 [pilon] Processing NODE_5345_length_589_cov_1.880342:1-589 [pilon] NODE_9109_length_361_cov_13.000000:1-361 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 68, Coverage: 10, minDepth: 5 [pilon] Confirmed 298 of 361 bases (82.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9109_length_361_cov_13.000000:1-361 [pilon] Processing NODE_12904_length_243_cov_24.049180:1-243 [pilon] NODE_6144_length_528_cov_36.304668:1-528 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 373, Coverage: 51, minDepth: 13 [pilon] Confirmed 355 of 528 bases (67.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6144_length_528_cov_36.304668:1-528 [pilon] Processing NODE_5779_length_557_cov_6.809633:1-557 [pilon] NODE_7878_length_423_cov_47.476821:1-423 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 330, Coverage: 57, minDepth: 14 [pilon] Confirmed 366 of 423 bases (86.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7878_length_423_cov_47.476821:1-423 [pilon] Processing NODE_5581_length_572_cov_10.753880:1-572 [pilon] NODE_15251_length_126_cov_5.800000:1-126 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 126 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15251_length_126_cov_5.800000:1-126 [pilon] Processing NODE_12821_length_243_cov_24.827869:1-243 [pilon] NODE_6862_length_480_cov_12.949861:1-480 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 94, Coverage: 17, minDepth: 5 [pilon] Confirmed 303 of 480 bases (63.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6862_length_480_cov_12.949861:1-480 [pilon] Processing NODE_4513_length_660_cov_32.246753:1-660 [pilon] NODE_3947_length_721_cov_2.911667:1-721 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 49, Coverage: 8, minDepth: 5 [pilon] Confirmed 560 of 721 bases (77.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3947_length_721_cov_2.911667:1-721 [pilon] Processing NODE_13609_length_243_cov_17.393443:1-243 [pilon] NODE_31_length_4494_cov_18.971873:1-4494 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 1854, Coverage: 53, minDepth: 13 [pilon] Confirmed 3683 of 4494 bases (81.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_31_length_4494_cov_18.971873:1-4494 [pilon] Processing NODE_8022_length_417_cov_20.621622:1-417 [pilon] NODE_6248_length_521_cov_7.607500:1-521 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 78, Coverage: 17, minDepth: 5 [pilon] Confirmed 420 of 521 bases (80.61%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6248_length_521_cov_7.607500:1-521 [pilon] Processing NODE_11480_length_264_cov_16.580420:1-264 [pilon] NODE_11889_length_249_cov_23.585938:1-249 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 72, Coverage: 9, minDepth: 5 [pilon] Confirmed 193 of 249 bases (77.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11889_length_249_cov_23.585938:1-249 [pilon] Processing NODE_13002_length_243_cov_22.901639:1-243 [pilon] NODE_5657_length_566_cov_13.622472:1-566 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 129, Coverage: 18, minDepth: 5 [pilon] Confirmed 401 of 566 bases (70.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5657_length_566_cov_13.622472:1-566 [pilon] Processing NODE_9580_length_342_cov_23.986425:1-342 [pilon] NODE_9436_length_348_cov_22.797357:1-348 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 113, Coverage: 18, minDepth: 5 [pilon] Confirmed 264 of 348 bases (75.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9436_length_348_cov_22.797357:1-348 [pilon] Processing NODE_3906_length_726_cov_29.424793:1-726 [pilon] NODE_15092_length_225_cov_10.451923:1-225 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 225 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15092_length_225_cov_10.451923:1-225 [pilon] Processing NODE_15113_length_214_cov_32.569892:1-214 [pilon] NODE_8095_length_414_cov_1.187713:1-414 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 173 of 414 bases (41.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8095_length_414_cov_1.187713:1-414 [pilon] Processing NODE_9826_length_333_cov_17.731132:1-333 [pilon] NODE_6010_length_540_cov_10.687351:1-540 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 109, Coverage: 15, minDepth: 5 [pilon] Confirmed 383 of 540 bases (70.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6010_length_540_cov_10.687351:1-540 [pilon] Processing NODE_6659_length_493_cov_9.215054:1-493 [pilon] NODE_5185_length_603_cov_5.985477:1-603 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 81, Coverage: 12, minDepth: 5 [pilon] Confirmed 403 of 603 bases (66.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5185_length_603_cov_5.985477:1-603 [pilon] Processing NODE_4529_length_659_cov_5.280669:1-659 [pilon] NODE_5969_length_543_cov_23.417062:1-543 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 227, Coverage: 23, minDepth: 6 [pilon] Confirmed 362 of 543 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5969_length_543_cov_23.417062:1-543 [pilon] Processing NODE_10405_length_309_cov_8.888298:1-309 [pilon] NODE_10573_length_302_cov_22.707182:1-302 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 98, Coverage: 9, minDepth: 5 [pilon] Confirmed 218 of 302 bases (72.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10573_length_302_cov_22.707182:1-302 [pilon] Processing NODE_14021_length_243_cov_14.024590:1-243 [pilon] NODE_6150_length_528_cov_18.110565:1-528 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 164, Coverage: 22, minDepth: 6 [pilon] Confirmed 390 of 528 bases (73.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6150_length_528_cov_18.110565:1-528 [pilon] Processing NODE_1756_length_1158_cov_35.212150:1-1158 [pilon] NODE_2372_length_997_cov_15.375571:1-997 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 375, Coverage: 31, minDepth: 8 [pilon] Confirmed 789 of 997 bases (79.14%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2372_length_997_cov_15.375571:1-997 [pilon] Processing NODE_7926_length_421_cov_52.250000:1-421 [pilon] NODE_13857_length_243_cov_15.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13857_length_243_cov_15.254098:1-243 [pilon] Processing NODE_4027_length_713_cov_3.739865:1-713 [pilon] NODE_15031_length_243_cov_5.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15031_length_243_cov_5.073770:1-243 [pilon] Processing NODE_2441_length_980_cov_4.513388:1-980 [pilon] NODE_5779_length_557_cov_6.809633:1-557 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 71, Coverage: 12, minDepth: 5 [pilon] Confirmed 389 of 557 bases (69.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_9840_length_333_cov_10.349057:1-333 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 59, Coverage: 4, minDepth: 5 [pilon] Confirmed 153 of 333 bases (45.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5779_length_557_cov_6.809633:1-557 [pilon] Processing NODE_14862_length_243_cov_7.032787:1-243 [pilon] NODE_12829_length_243_cov_24.778689:1-243 log: [pilon] Finished processing NODE_9840_length_333_cov_10.349057:1-333 [pilon] Processing NODE_8357_length_402_cov_20.085409:1-402 [pilon] NODE_4416_length_670_cov_2.540984:1-670 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 398 of 670 bases (59.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4416_length_670_cov_2.540984:1-670 [pilon] Processing NODE_10701_length_297_cov_28.357955:1-297 [pilon] NODE_11443_length_265_cov_24.798611:1-265 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 68, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 265 bases (49.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11443_length_265_cov_24.798611:1-265 [pilon] Processing NODE_10161_length_318_cov_27.898477:1-318 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12829_length_243_cov_24.778689:1-243 [pilon] Processing NODE_1522_length_1250_cov_24.973428:1-1250 [pilon] NODE_172_length_2590_cov_2.557311:1-2590 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 198, Coverage: 10, minDepth: 5 [pilon] Confirmed 2183 of 2590 bases (84.29%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_172_length_2590_cov_2.557311:1-2590 [pilon] Processing NODE_1675_length_1191_cov_16.706542:1-1191 [pilon] NODE_10437_length_306_cov_36.145946:1-306 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 133, Coverage: 10, minDepth: 5 [pilon] Confirmed 180 of 306 bases (58.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10437_length_306_cov_36.145946:1-306 [pilon] Processing NODE_12131_length_243_cov_41.540984:1-243 [pilon] NODE_10762_length_294_cov_146.063584:1-294 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 670, Coverage: 50, minDepth: 13 [pilon] Confirmed 255 of 294 bases (86.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10762_length_294_cov_146.063584:1-294 [pilon] Processing NODE_2923_length_888_cov_23.211213:1-888 [pilon] NODE_12904_length_243_cov_24.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12904_length_243_cov_24.049180:1-243 [pilon] Processing NODE_11501_length_264_cov_6.629371:1-264 [pilon] NODE_5345_length_589_cov_1.880342:1-589 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 397 of 589 bases (67.40%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5345_length_589_cov_1.880342:1-589 [pilon] Processing NODE_5205_length_601_cov_6.418750:1-601 [pilon] NODE_8022_length_417_cov_20.621622:1-417 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 144, Coverage: 29, minDepth: 7 [pilon] Confirmed 344 of 417 bases (82.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8022_length_417_cov_20.621622:1-417 [pilon] Processing NODE_7453_length_446_cov_1.338462:1-446 [pilon] NODE_12821_length_243_cov_24.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12821_length_243_cov_24.827869:1-243 [pilon] Processing NODE_3998_length_715_cov_28.232323:1-715 [pilon] NODE_13609_length_243_cov_17.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13609_length_243_cov_17.393443:1-243 [pilon] Processing NODE_273_length_2291_cov_31.603226:1-2291 [pilon] NODE_4513_length_660_cov_32.246753:1-660 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 489, Coverage: 55, minDepth: 14 [pilon] Confirmed 410 of 660 bases (62.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4513_length_660_cov_32.246753:1-660 [pilon] Processing NODE_6695_length_490_cov_60.162602:1-490 [pilon] NODE_5581_length_572_cov_10.753880:1-572 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 109, Coverage: 13, minDepth: 5 [pilon] Confirmed 395 of 572 bases (69.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5581_length_572_cov_10.753880:1-572 [pilon] Processing NODE_7877_length_423_cov_51.334437:1-423 [pilon] NODE_11480_length_264_cov_16.580420:1-264 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 48, Coverage: 5, minDepth: 5 [pilon] Confirmed 134 of 264 bases (50.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11480_length_264_cov_16.580420:1-264 [pilon] Processing NODE_10721_length_297_cov_13.090909:1-297 [pilon] NODE_13002_length_243_cov_22.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13002_length_243_cov_22.901639:1-243 [pilon] Processing NODE_11579_length_261_cov_17.521429:1-261 [pilon] NODE_15113_length_214_cov_32.569892:1-214 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 43, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 214 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15113_length_214_cov_32.569892:1-214 [pilon] Processing NODE_10596_length_301_cov_16.322222:1-301 [pilon] NODE_3906_length_726_cov_29.424793:1-726 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 513, Coverage: 34, minDepth: 9 [pilon] Confirmed 538 of 726 bases (74.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3906_length_726_cov_29.424793:1-726 [pilon] Processing NODE_12896_length_243_cov_24.122951:1-243 [pilon] NODE_9826_length_333_cov_17.731132:1-333 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 83, Coverage: 12, minDepth: 5 [pilon] Confirmed 276 of 333 bases (82.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9826_length_333_cov_17.731132:1-333 [pilon] Processing NODE_5656_length_566_cov_19.685393:1-566 [pilon] NODE_9580_length_342_cov_23.986425:1-342 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 101, Coverage: 11, minDepth: 5 [pilon] Confirmed 203 of 342 bases (59.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9580_length_342_cov_23.986425:1-342 [pilon] Processing NODE_12265_length_243_cov_34.180328:1-243 [pilon] NODE_2441_length_980_cov_4.513388:1-980 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 100, Coverage: 13, minDepth: 5 [pilon] Confirmed 682 of 980 bases (69.59%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2441_length_980_cov_4.513388:1-980 [pilon] Processing NODE_2105_length_1057_cov_24.673077:1-1057 [pilon] NODE_10161_length_318_cov_27.898477:1-318 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 119, Coverage: 19, minDepth: 5 [pilon] Confirmed 281 of 318 bases (88.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10161_length_318_cov_27.898477:1-318 [pilon] Processing NODE_8490_length_394_cov_37.545788:1-394 [pilon] NODE_10405_length_309_cov_8.888298:1-309 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 38, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 309 bases (42.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10405_length_309_cov_8.888298:1-309 [pilon] Processing NODE_14891_length_243_cov_6.786885:1-243 [pilon] NODE_6659_length_493_cov_9.215054:1-493 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 109, Coverage: 2, minDepth: 5 [pilon] Confirmed 53 of 493 bases (10.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6659_length_493_cov_9.215054:1-493 [pilon] NODE_4529_length_659_cov_5.280669:1-659 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 66, Coverage: 12, minDepth: 5 [pilon] Confirmed 525 of 659 bases (79.67%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_10681_length_299_cov_7.629213:1-299 [pilon] Finished processing NODE_4529_length_659_cov_5.280669:1-659 [pilon] Processing NODE_7074_length_466_cov_50.336232:1-466 [pilon] NODE_4027_length_713_cov_3.739865:1-713 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 53, Coverage: 9, minDepth: 5 [pilon] Confirmed 485 of 713 bases (68.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4027_length_713_cov_3.739865:1-713 [pilon] Processing NODE_6665_length_492_cov_49.789757:1-492 [pilon] NODE_14021_length_243_cov_14.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14021_length_243_cov_14.024590:1-243 [pilon] Processing NODE_9941_length_328_cov_8.550725:1-328 [pilon] NODE_1756_length_1158_cov_35.212150:1-1158 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 1011, Coverage: 61, minDepth: 15 [pilon] Confirmed 890 of 1158 bases (76.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1756_length_1158_cov_35.212150:1-1158 [pilon] Processing NODE_6654_length_493_cov_28.508065:1-493 [pilon] NODE_8357_length_402_cov_20.085409:1-402 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 140, Coverage: 7, minDepth: 5 [pilon] Confirmed 151 of 402 bases (37.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8357_length_402_cov_20.085409:1-402 [pilon] Processing NODE_8514_length_393_cov_17.511029:1-393 [pilon] NODE_7926_length_421_cov_52.250000:1-421 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 346, Coverage: 65, minDepth: 16 [pilon] Confirmed 372 of 421 bases (88.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7926_length_421_cov_52.250000:1-421 [pilon] Processing NODE_3535_length_779_cov_11.364742:1-779 [pilon] NODE_10701_length_297_cov_28.357955:1-297 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 85, Coverage: 6, minDepth: 5 [pilon] Confirmed 176 of 297 bases (59.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10701_length_297_cov_28.357955:1-297 [pilon] Processing NODE_12116_length_243_cov_44.622951:1-243 [pilon] NODE_14862_length_243_cov_7.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14862_length_243_cov_7.032787:1-243 [pilon] Processing NODE_1093_length_1444_cov_23.495843:1-1444 [pilon] NODE_1522_length_1250_cov_24.973428:1-1250 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 727, Coverage: 37, minDepth: 9 [pilon] Confirmed 1069 of 1250 bases (85.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1522_length_1250_cov_24.973428:1-1250 [pilon] Processing NODE_2518_length_964_cov_2.660735:1-964 [pilon] NODE_11501_length_264_cov_6.629371:1-264 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 20, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11501_length_264_cov_6.629371:1-264 [pilon] Processing NODE_8210_length_408_cov_9.034843:1-408 [pilon] NODE_12131_length_243_cov_41.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 92, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12131_length_243_cov_41.540984:1-243 [pilon] Processing NODE_13513_length_243_cov_18.278689:1-243 [pilon] NODE_5205_length_601_cov_6.418750:1-601 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 75, Coverage: 16, minDepth: 5 [pilon] Confirmed 544 of 601 bases (90.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5205_length_601_cov_6.418750:1-601 [pilon] Processing NODE_3246_length_825_cov_10.517045:1-825 [pilon] NODE_2923_length_888_cov_23.211213:1-888 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 444, Coverage: 48, minDepth: 12 [pilon] Confirmed 799 of 888 bases (89.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2923_length_888_cov_23.211213:1-888 [pilon] Processing NODE_6352_length_513_cov_32.630102:1-513 [pilon] NODE_7453_length_446_cov_1.338462:1-446 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 168 of 446 bases (37.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7453_length_446_cov_1.338462:1-446 [pilon] Processing NODE_9651_length_339_cov_24.477064:1-339 [pilon] NODE_3998_length_715_cov_28.232323:1-715 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 390, Coverage: 41, minDepth: 10 [pilon] Confirmed 536 of 715 bases (74.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3998_length_715_cov_28.232323:1-715 [pilon] Processing NODE_2174_length_1040_cov_11.956474:1-1040 [pilon] NODE_1675_length_1191_cov_16.706542:1-1191 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 385, Coverage: 28, minDepth: 7 [pilon] Confirmed 864 of 1191 bases (72.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1675_length_1191_cov_16.706542:1-1191 [pilon] Processing NODE_84_length_3142_cov_16.734856:1-3142 [pilon] NODE_7877_length_423_cov_51.334437:1-423 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 336, Coverage: 61, minDepth: 15 [pilon] Confirmed 368 of 423 bases (87.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7877_length_423_cov_51.334437:1-423 [pilon] Processing NODE_5899_length_548_cov_2.121780:1-548 [pilon] NODE_10721_length_297_cov_13.090909:1-297 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 39, Coverage: 6, minDepth: 5 [pilon] Confirmed 192 of 297 bases (64.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10721_length_297_cov_13.090909:1-297 [pilon] Processing NODE_3034_length_867_cov_22.061662:1-867 [pilon] NODE_2105_length_1057_cov_24.673077:1-1057 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 640, Coverage: 35, minDepth: 9 [pilon] Confirmed 819 of 1057 bases (77.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2105_length_1057_cov_24.673077:1-1057 [pilon] Processing NODE_9876_length_330_cov_30.200957:1-330 [pilon] NODE_6695_length_490_cov_60.162602:1-490 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 495, Coverage: 84, minDepth: 21 [pilon] Confirmed 421 of 490 bases (85.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6695_length_490_cov_60.162602:1-490 [pilon] Processing NODE_1330_length_1329_cov_11.472682:1-1329 [pilon] NODE_6665_length_492_cov_49.789757:1-492 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 419, Coverage: 57, minDepth: 14 [pilon] Confirmed 360 of 492 bases (73.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6665_length_492_cov_49.789757:1-492 [pilon] Processing NODE_10417_length_308_cov_14.053476:1-308 [pilon] NODE_11579_length_261_cov_17.521429:1-261 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 53, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11579_length_261_cov_17.521429:1-261 [pilon] Processing NODE_2992_length_874_cov_10.389110:1-874 [pilon] NODE_273_length_2291_cov_31.603226:1-2291 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 1575, Coverage: 68, minDepth: 17 [pilon] Confirmed 2033 of 2291 bases (88.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_273_length_2291_cov_31.603226:1-2291 [pilon] Processing NODE_12525_length_243_cov_28.729508:1-243 [pilon] NODE_8490_length_394_cov_37.545788:1-394 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 256, Coverage: 35, minDepth: 9 [pilon] Confirmed 370 of 394 bases (93.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8490_length_394_cov_37.545788:1-394 [pilon] Processing NODE_3539_length_778_cov_36.039574:1-778 [pilon] NODE_12896_length_243_cov_24.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12896_length_243_cov_24.122951:1-243 [pilon] Processing NODE_11817_length_252_cov_19.015267:1-252 [pilon] NODE_10596_length_301_cov_16.322222:1-301 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 67, Coverage: 9, minDepth: 5 [pilon] Confirmed 212 of 301 bases (70.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10596_length_301_cov_16.322222:1-301 [pilon] Processing NODE_5430_length_582_cov_12.798265:1-582 [pilon] NODE_5656_length_566_cov_19.685393:1-566 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 205, Coverage: 22, minDepth: 6 [pilon] Confirmed 427 of 566 bases (75.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5656_length_566_cov_19.685393:1-566 [pilon] Processing NODE_14088_length_243_cov_13.540984:1-243 [pilon] NODE_12265_length_243_cov_34.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12265_length_243_cov_34.180328:1-243 [pilon] Processing NODE_13073_length_243_cov_22.204918:1-243 [pilon] NODE_14891_length_243_cov_6.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14891_length_243_cov_6.786885:1-243 [pilon] Processing NODE_8286_length_405_cov_12.718310:1-405 [pilon] NODE_10681_length_299_cov_7.629213:1-299 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 27, Coverage: 3, minDepth: 5 [pilon] Confirmed 101 of 299 bases (33.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10681_length_299_cov_7.629213:1-299 [pilon] Processing NODE_14143_length_243_cov_13.188525:1-243 [pilon] NODE_7074_length_466_cov_50.336232:1-466 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 396, Coverage: 74, minDepth: 19 [pilon] Confirmed 420 of 466 bases (90.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7074_length_466_cov_50.336232:1-466 [pilon] Processing NODE_6957_length_474_cov_9.053824:1-474 [pilon] NODE_12116_length_243_cov_44.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12116_length_243_cov_44.622951:1-243 [pilon] Processing NODE_3220_length_830_cov_17.971791:1-830 [pilon] NODE_9941_length_328_cov_8.550725:1-328 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 44, Coverage: 6, minDepth: 5 [pilon] Confirmed 199 of 328 bases (60.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9941_length_328_cov_8.550725:1-328 [pilon] Processing NODE_10196_length_318_cov_6.736041:1-318 [pilon] NODE_2518_length_964_cov_2.660735:1-964 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 56, Coverage: 8, minDepth: 5 [pilon] Confirmed 485 of 964 bases (50.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2518_length_964_cov_2.660735:1-964 [pilon] Processing NODE_14854_length_243_cov_7.122951:1-243 [pilon] NODE_6654_length_493_cov_28.508065:1-493 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 236, Coverage: 36, minDepth: 9 [pilon] Confirmed 344 of 493 bases (69.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6654_length_493_cov_28.508065:1-493 [pilon] Processing NODE_3798_length_741_cov_6.175806:1-741 [pilon] NODE_9876_length_330_cov_30.200957:1-330 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 146, Coverage: 23, minDepth: 6 [pilon] Confirmed 289 of 330 bases (87.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9876_length_330_cov_30.200957:1-330 [pilon] NODE_8514_length_393_cov_17.511029:1-393 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 115, Coverage: 6, minDepth: 5 [pilon] Confirmed 206 of 393 bases (52.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8514_length_393_cov_17.511029:1-393 [pilon] Processing NODE_5325_length_590_cov_55.343284:1-590 [pilon] Processing NODE_5602_length_570_cov_22.026726:1-570 [pilon] NODE_3535_length_779_cov_11.364742:1-779 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 186, Coverage: 17, minDepth: 5 [pilon] Confirmed 593 of 779 bases (76.12%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3535_length_779_cov_11.364742:1-779 [pilon] Processing NODE_11086_length_280_cov_7.245283:1-280 [pilon] NODE_3034_length_867_cov_22.061662:1-867 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 394, Coverage: 41, minDepth: 10 [pilon] Confirmed 814 of 867 bases (93.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3034_length_867_cov_22.061662:1-867 [pilon] Processing NODE_6777_length_485_cov_0.826923:1-485 [pilon] NODE_13513_length_243_cov_18.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13513_length_243_cov_18.278689:1-243 [pilon] Processing NODE_12771_length_243_cov_25.336066:1-243 [pilon] NODE_8210_length_408_cov_9.034843:1-408 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 58, Coverage: 9, minDepth: 5 [pilon] Confirmed 232 of 408 bases (56.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8210_length_408_cov_9.034843:1-408 [pilon] Processing NODE_8608_length_387_cov_30.037594:1-387 [pilon] NODE_10417_length_308_cov_14.053476:1-308 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 64, Coverage: 6, minDepth: 5 [pilon] Confirmed 214 of 308 bases (69.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10417_length_308_cov_14.053476:1-308 [pilon] Processing NODE_891_length_1567_cov_24.383126:1-1567 [pilon] NODE_3246_length_825_cov_10.517045:1-825 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 219, Coverage: 16, minDepth: 5 [pilon] Confirmed 568 of 825 bases (68.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3246_length_825_cov_10.517045:1-825 [pilon] Processing NODE_14380_length_243_cov_11.221311:1-243 [pilon] NODE_1093_length_1444_cov_23.495843:1-1444 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 734, Coverage: 51, minDepth: 13 [pilon] Confirmed 1246 of 1444 bases (86.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1093_length_1444_cov_23.495843:1-1444 [pilon] Processing NODE_6578_length_498_cov_20.283820:1-498 [pilon] NODE_6352_length_513_cov_32.630102:1-513 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 313, Coverage: 38, minDepth: 10 [pilon] Confirmed 350 of 513 bases (68.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6352_length_513_cov_32.630102:1-513 [pilon] Processing NODE_2989_length_874_cov_36.499336:1-874 [pilon] NODE_9651_length_339_cov_24.477064:1-339 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 126, Coverage: 14, minDepth: 5 [pilon] Confirmed 262 of 339 bases (77.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9651_length_339_cov_24.477064:1-339 [pilon] Processing NODE_379_length_2078_cov_7.897292:1-2078 [pilon] NODE_2174_length_1040_cov_11.956474:1-1040 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 280, Coverage: 25, minDepth: 6 [pilon] Confirmed 887 of 1040 bases (85.29%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2174_length_1040_cov_11.956474:1-1040 [pilon] Processing NODE_1361_length_1313_cov_15.274329:1-1313 [pilon] NODE_5899_length_548_cov_2.121780:1-548 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 29, Coverage: 6, minDepth: 5 [pilon] Confirmed 360 of 548 bases (65.69%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5899_length_548_cov_2.121780:1-548 [pilon] Processing NODE_7144_length_463_cov_0.944444:1-463 [pilon] NODE_1330_length_1329_cov_11.472682:1-1329 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 432, Coverage: 34, minDepth: 9 [pilon] Confirmed 800 of 1329 bases (60.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1330_length_1329_cov_11.472682:1-1329 [pilon] Processing NODE_1055_length_1463_cov_15.744411:1-1463 [pilon] NODE_12525_length_243_cov_28.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12525_length_243_cov_28.729508:1-243 [pilon] Processing NODE_1079_length_1452_cov_34.174305:1-1452 [pilon] NODE_2992_length_874_cov_10.389110:1-874 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 225, Coverage: 25, minDepth: 6 [pilon] Confirmed 636 of 874 bases (72.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2992_length_874_cov_10.389110:1-874 [pilon] Processing NODE_12272_length_243_cov_33.991803:1-243 [pilon] NODE_84_length_3142_cov_16.734856:1-3142 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 1267, Coverage: 39, minDepth: 10 [pilon] Confirmed 2714 of 3142 bases (86.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_84_length_3142_cov_16.734856:1-3142 [pilon] Processing NODE_7138_length_463_cov_18.321637:1-463 [pilon] NODE_3539_length_778_cov_36.039574:1-778 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 604, Coverage: 56, minDepth: 14 [pilon] Confirmed 600 of 778 bases (77.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3539_length_778_cov_36.039574:1-778 [pilon] Processing NODE_6311_length_517_cov_0.914141:1-517 [pilon] NODE_11817_length_252_cov_19.015267:1-252 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 68, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11817_length_252_cov_19.015267:1-252 [pilon] Processing NODE_1006_length_1491_cov_2.536496:1-1491 [pilon] NODE_5430_length_582_cov_12.798265:1-582 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 133, Coverage: 10, minDepth: 5 [pilon] Confirmed 310 of 582 bases (53.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5430_length_582_cov_12.798265:1-582 [pilon] Processing NODE_2067_length_1068_cov_17.976769:1-1068 [pilon] NODE_14088_length_243_cov_13.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14088_length_243_cov_13.540984:1-243 [pilon] Processing NODE_1966_length_1094_cov_24.491264:1-1094 [pilon] NODE_14143_length_243_cov_13.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14143_length_243_cov_13.188525:1-243 [pilon] NODE_13073_length_243_cov_22.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13073_length_243_cov_22.204918:1-243 [pilon] Processing NODE_8804_length_377_cov_15.097656:1-377 [pilon] Processing NODE_3577_length_773_cov_9.118098:1-773 [pilon] NODE_8286_length_405_cov_12.718310:1-405 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 86, Coverage: 6, minDepth: 5 [pilon] Confirmed 201 of 405 bases (49.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8286_length_405_cov_12.718310:1-405 [pilon] Processing NODE_13710_length_243_cov_16.336066:1-243 [pilon] NODE_5325_length_590_cov_55.343284:1-590 log: [pilon] frags shovill.bam: coverage 88 [pilon] Total Reads: 586, Coverage: 88, minDepth: 22 [pilon] Confirmed 520 of 590 bases (88.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5325_length_590_cov_55.343284:1-590 [pilon] Processing NODE_12017_length_246_cov_13.744000:1-246 [pilon] NODE_6777_length_485_cov_0.826923:1-485 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 82 of 485 bases (16.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6777_length_485_cov_0.826923:1-485 [pilon] Processing NODE_813_length_1620_cov_19.476318:1-1620 [pilon] NODE_6957_length_474_cov_9.053824:1-474 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 75, Coverage: 7, minDepth: 5 [pilon] Confirmed 276 of 474 bases (58.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6957_length_474_cov_9.053824:1-474 [pilon] Processing NODE_5825_length_554_cov_1.297921:1-554 [pilon] NODE_891_length_1567_cov_24.383126:1-1567 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 903, Coverage: 62, minDepth: 16 [pilon] Confirmed 1254 of 1567 bases (80.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_891_length_1567_cov_24.383126:1-1567 [pilon] Processing NODE_1952_length_1097_cov_3.174180:1-1097 [pilon] NODE_3220_length_830_cov_17.971791:1-830 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 453, Coverage: 54, minDepth: 14 [pilon] Confirmed 500 of 830 bases (60.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3220_length_830_cov_17.971791:1-830 [pilon] Processing NODE_8742_length_380_cov_37.725869:1-380 [pilon] NODE_10196_length_318_cov_6.736041:1-318 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 318 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10196_length_318_cov_6.736041:1-318 [pilon] Processing NODE_3120_length_848_cov_7.324622:1-848 [pilon] NODE_14854_length_243_cov_7.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14854_length_243_cov_7.122951:1-243 [pilon] Processing NODE_7091_length_465_cov_23.607558:1-465 [pilon] NODE_11086_length_280_cov_7.245283:1-280 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 26, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 280 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11086_length_280_cov_7.245283:1-280 [pilon] Processing NODE_12354_length_243_cov_32.024590:1-243 [pilon] NODE_12771_length_243_cov_25.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12771_length_243_cov_25.336066:1-243 [pilon] Processing NODE_9927_length_329_cov_3.947115:1-329 [pilon] NODE_3798_length_741_cov_6.175806:1-741 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 88, Coverage: 14, minDepth: 5 [pilon] Confirmed 665 of 741 bases (89.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3798_length_741_cov_6.175806:1-741 [pilon] Processing NODE_758_length_1663_cov_2.055123:1-1663 [pilon] NODE_5602_length_570_cov_22.026726:1-570 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 203, Coverage: 32, minDepth: 8 [pilon] Confirmed 396 of 570 bases (69.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5602_length_570_cov_22.026726:1-570 [pilon] Processing NODE_8948_length_369_cov_12.588710:1-369 [pilon] NODE_8608_length_387_cov_30.037594:1-387 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 148, Coverage: 15, minDepth: 5 [pilon] Confirmed 246 of 387 bases (63.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8608_length_387_cov_30.037594:1-387 [pilon] Processing NODE_14488_length_243_cov_10.352459:1-243 [pilon] NODE_14380_length_243_cov_11.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14380_length_243_cov_11.221311:1-243 [pilon] Processing NODE_2237_length_1023_cov_6.003326:1-1023 [pilon] NODE_6578_length_498_cov_20.283820:1-498 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 169, Coverage: 16, minDepth: 5 [pilon] Confirmed 339 of 498 bases (68.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6578_length_498_cov_20.283820:1-498 [pilon] Processing NODE_1601_length_1218_cov_2.489517:1-1218 [pilon] NODE_2989_length_874_cov_36.499336:1-874 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 625, Coverage: 68, minDepth: 17 [pilon] Confirmed 789 of 874 bases (90.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2989_length_874_cov_36.499336:1-874 [pilon] Processing NODE_7009_length_471_cov_1.340000:1-471 [pilon] NODE_7144_length_463_cov_0.944444:1-463 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 9 of 463 bases (1.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7144_length_463_cov_0.944444:1-463 [pilon] Processing NODE_1988_length_1090_cov_12.532508:1-1090 [pilon] NODE_1361_length_1313_cov_15.274329:1-1313 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 430, Coverage: 31, minDepth: 8 [pilon] Confirmed 1076 of 1313 bases (81.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1361_length_1313_cov_15.274329:1-1313 [pilon] Processing NODE_9365_length_351_cov_23.395652:1-351 [pilon] NODE_379_length_2078_cov_7.897292:1-2078 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 435, Coverage: 22, minDepth: 6 [pilon] Confirmed 1496 of 2078 bases (71.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_379_length_2078_cov_7.897292:1-2078 [pilon] Processing NODE_643_length_1757_cov_19.544621:1-1757 [pilon] NODE_1055_length_1463_cov_15.744411:1-1463 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 584, Coverage: 47, minDepth: 12 [pilon] Confirmed 1191 of 1463 bases (81.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1055_length_1463_cov_15.744411:1-1463 [pilon] Processing NODE_10799_length_294_cov_5.682081:1-294 [pilon] NODE_12017_length_246_cov_13.744000:1-246 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 37, Coverage: 6, minDepth: 5 [pilon] Confirmed 158 of 246 bases (64.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12017_length_246_cov_13.744000:1-246 [pilon] Processing NODE_5396_length_584_cov_26.049676:1-584 [pilon] NODE_12272_length_243_cov_33.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 90, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12272_length_243_cov_33.991803:1-243 [pilon] Processing NODE_4887_length_627_cov_39.110672:1-627 [pilon] NODE_1006_length_1491_cov_2.536496:1-1491 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 104, Coverage: 9, minDepth: 5 [pilon] Confirmed 1273 of 1491 bases (85.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1006_length_1491_cov_2.536496:1-1491 [pilon] Processing NODE_13582_length_243_cov_17.639344:1-243 [pilon] NODE_1079_length_1452_cov_34.174305:1-1452 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 1036, Coverage: 85, minDepth: 21 [pilon] Confirmed 1005 of 1452 bases (69.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1079_length_1452_cov_34.174305:1-1452 [pilon] Processing NODE_5333_length_590_cov_15.985075:1-590 [pilon] NODE_7138_length_463_cov_18.321637:1-463 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 139, Coverage: 17, minDepth: 5 [pilon] Confirmed 357 of 463 bases (77.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7138_length_463_cov_18.321637:1-463 [pilon] Processing NODE_4912_length_625_cov_4.073413:1-625 [pilon] NODE_6311_length_517_cov_0.914141:1-517 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 153 of 517 bases (29.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6311_length_517_cov_0.914141:1-517 [pilon] Processing NODE_6188_length_525_cov_12.851485:1-525 [pilon] NODE_813_length_1620_cov_19.476318:1-1620 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 735, Coverage: 49, minDepth: 12 [pilon] Confirmed 1321 of 1620 bases (81.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_813_length_1620_cov_19.476318:1-1620 [pilon] Processing NODE_2567_length_953_cov_22.381010:1-953 [pilon] NODE_2067_length_1068_cov_17.976769:1-1068 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 614, Coverage: 61, minDepth: 15 [pilon] Confirmed 779 of 1068 bases (72.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2067_length_1068_cov_17.976769:1-1068 [pilon] Processing NODE_6095_length_532_cov_27.880779:1-532 [pilon] NODE_1952_length_1097_cov_3.174180:1-1097 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 81, Coverage: 10, minDepth: 5 [pilon] Confirmed 881 of 1097 bases (80.31%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1952_length_1097_cov_3.174180:1-1097 [pilon] Processing NODE_14537_length_243_cov_9.991803:1-243 [pilon] NODE_1966_length_1094_cov_24.491264:1-1094 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 550, Coverage: 44, minDepth: 11 [pilon] Confirmed 879 of 1094 bases (80.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1966_length_1094_cov_24.491264:1-1094 [pilon] Processing NODE_13578_length_243_cov_17.696721:1-243 [pilon] NODE_13710_length_243_cov_16.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13710_length_243_cov_16.336066:1-243 [pilon] Processing NODE_11027_length_282_cov_19.763975:1-282 [pilon] NODE_8804_length_377_cov_15.097656:1-377 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 101, Coverage: 16, minDepth: 5 [pilon] Confirmed 317 of 377 bases (84.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8804_length_377_cov_15.097656:1-377 [pilon] Processing NODE_6564_length_499_cov_3.761905:1-499 [pilon] NODE_3577_length_773_cov_9.118098:1-773 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 195, Coverage: 29, minDepth: 7 [pilon] Confirmed 696 of 773 bases (90.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3577_length_773_cov_9.118098:1-773 [pilon] Processing NODE_3844_length_735_cov_8.983713:1-735 [pilon] NODE_5825_length_554_cov_1.297921:1-554 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 311 of 554 bases (56.14%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5825_length_554_cov_1.297921:1-554 [pilon] Processing NODE_5567_length_573_cov_10.993363:1-573 [pilon] NODE_8742_length_380_cov_37.725869:1-380 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 165, Coverage: 16, minDepth: 5 [pilon] Confirmed 255 of 380 bases (67.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8742_length_380_cov_37.725869:1-380 [pilon] Processing NODE_410_length_2034_cov_2.726085:1-2034 [pilon] NODE_7091_length_465_cov_23.607558:1-465 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 193, Coverage: 17, minDepth: 5 [pilon] Confirmed 400 of 465 bases (86.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7091_length_465_cov_23.607558:1-465 [pilon] Processing NODE_4457_length_665_cov_20.669118:1-665 [pilon] NODE_3120_length_848_cov_7.324622:1-848 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 140, Coverage: 21, minDepth: 5 [pilon] Confirmed 605 of 848 bases (71.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3120_length_848_cov_7.324622:1-848 [pilon] Processing NODE_13781_length_243_cov_15.819672:1-243 [pilon] NODE_9927_length_329_cov_3.947115:1-329 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 176 of 329 bases (53.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9927_length_329_cov_3.947115:1-329 [pilon] Processing NODE_472_length_1947_cov_1.131982:1-1947 [pilon] NODE_8948_length_369_cov_12.588710:1-369 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 72, Coverage: 11, minDepth: 5 [pilon] Confirmed 244 of 369 bases (66.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8948_length_369_cov_12.588710:1-369 [pilon] Processing NODE_10969_length_285_cov_19.432927:1-285 [pilon] NODE_5396_length_584_cov_26.049676:1-584 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 271, Coverage: 30, minDepth: 8 [pilon] Confirmed 385 of 584 bases (65.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5396_length_584_cov_26.049676:1-584 [pilon] Processing NODE_3319_length_812_cov_2.800289:1-812 [pilon] NODE_14488_length_243_cov_10.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14488_length_243_cov_10.352459:1-243 [pilon] Processing NODE_155_length_2700_cov_2.160140:1-2700 [pilon] NODE_12354_length_243_cov_32.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12354_length_243_cov_32.024590:1-243 [pilon] Processing NODE_9257_length_355_cov_20.957265:1-355 [pilon] NODE_2237_length_1023_cov_6.003326:1-1023 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 146, Coverage: 11, minDepth: 5 [pilon] Confirmed 560 of 1023 bases (54.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2237_length_1023_cov_6.003326:1-1023 [pilon] Processing NODE_14645_length_243_cov_9.065574:1-243 [pilon] NODE_758_length_1663_cov_2.055123:1-1663 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 99, Coverage: 8, minDepth: 5 [pilon] Confirmed 1430 of 1663 bases (85.99%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_758_length_1663_cov_2.055123:1-1663 [pilon] Processing NODE_7641_length_435_cov_34.783439:1-435 [pilon] NODE_2567_length_953_cov_22.381010:1-953 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 417, Coverage: 43, minDepth: 11 [pilon] Confirmed 752 of 953 bases (78.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2567_length_953_cov_22.381010:1-953 [pilon] Processing NODE_8639_length_386_cov_14.984906:1-386 [pilon] NODE_1601_length_1218_cov_2.489517:1-1218 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 68, Coverage: 7, minDepth: 5 [pilon] Confirmed 609 of 1218 bases (50.00%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1601_length_1218_cov_2.489517:1-1218 [pilon] Processing NODE_6988_length_472_cov_10.532764:1-472 [pilon] NODE_7009_length_471_cov_1.340000:1-471 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 183 of 471 bases (38.85%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7009_length_471_cov_1.340000:1-471 [pilon] Processing NODE_5630_length_568_cov_16.941834:1-568 [pilon] NODE_14537_length_243_cov_9.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14537_length_243_cov_9.991803:1-243 [pilon] Processing NODE_1067_length_1456_cov_29.372285:1-1456 [pilon] NODE_10799_length_294_cov_5.682081:1-294 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 294 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10799_length_294_cov_5.682081:1-294 [pilon] Processing NODE_9059_length_363_cov_26.219008:1-363 [pilon] NODE_1988_length_1090_cov_12.532508:1-1090 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 310, Coverage: 25, minDepth: 6 [pilon] Confirmed 1016 of 1090 bases (93.21%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1988_length_1090_cov_12.532508:1-1090 [pilon] Processing NODE_12441_length_243_cov_30.106557:1-243 [pilon] NODE_13582_length_243_cov_17.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13582_length_243_cov_17.639344:1-243 [pilon] Processing NODE_6384_length_511_cov_39.320513:1-511 [pilon] NODE_4887_length_627_cov_39.110672:1-627 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 450, Coverage: 65, minDepth: 16 [pilon] Confirmed 554 of 627 bases (88.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4887_length_627_cov_39.110672:1-627 [pilon] Processing NODE_45_length_3798_cov_15.249932:1-3798 [pilon] NODE_9365_length_351_cov_23.395652:1-351 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 122, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 351 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9365_length_351_cov_23.395652:1-351 [pilon] Processing NODE_5323_length_591_cov_2.257447:1-591 [pilon] NODE_643_length_1757_cov_19.544621:1-1757 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 767, Coverage: 34, minDepth: 9 [pilon] Confirmed 1514 of 1757 bases (86.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_643_length_1757_cov_19.544621:1-1757 [pilon] Processing NODE_5773_length_557_cov_45.713303:1-557 [pilon] NODE_5333_length_590_cov_15.985075:1-590 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 158, Coverage: 29, minDepth: 7 [pilon] Confirmed 419 of 590 bases (71.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5333_length_590_cov_15.985075:1-590 [pilon] Processing NODE_12891_length_243_cov_24.155738:1-243 [pilon] NODE_6188_length_525_cov_12.851485:1-525 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 100, Coverage: 11, minDepth: 5 [pilon] Confirmed 333 of 525 bases (63.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6188_length_525_cov_12.851485:1-525 [pilon] Processing NODE_4479_length_663_cov_24.658672:1-663 [pilon] NODE_6095_length_532_cov_27.880779:1-532 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 300, Coverage: 33, minDepth: 8 [pilon] Confirmed 305 of 532 bases (57.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6095_length_532_cov_27.880779:1-532 [pilon] Processing NODE_5879_length_549_cov_18.570093:1-549 [pilon] NODE_4912_length_625_cov_4.073413:1-625 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 49, Coverage: 10, minDepth: 5 [pilon] Confirmed 347 of 625 bases (55.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4912_length_625_cov_4.073413:1-625 [pilon] Processing NODE_12828_length_243_cov_24.778689:1-243 [pilon] NODE_11027_length_282_cov_19.763975:1-282 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 62, Coverage: 3, minDepth: 5 [pilon] Confirmed 115 of 282 bases (40.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11027_length_282_cov_19.763975:1-282 [pilon] Processing NODE_8853_length_374_cov_25.577075:1-374 [pilon] NODE_13578_length_243_cov_17.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13578_length_243_cov_17.696721:1-243 [pilon] Processing NODE_4204_length_693_cov_30.256993:1-693 [pilon] NODE_6564_length_499_cov_3.761905:1-499 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 37, Coverage: 9, minDepth: 5 [pilon] Confirmed 413 of 499 bases (82.77%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6564_length_499_cov_3.761905:1-499 [pilon] Processing NODE_11035_length_282_cov_16.043478:1-282 [pilon] NODE_5567_length_573_cov_10.993363:1-573 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 125, Coverage: 22, minDepth: 6 [pilon] Confirmed 492 of 573 bases (85.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5567_length_573_cov_10.993363:1-573 [pilon] Processing NODE_12579_length_243_cov_27.786885:1-243 [pilon] NODE_3844_length_735_cov_8.983713:1-735 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 165, Coverage: 21, minDepth: 5 [pilon] Confirmed 412 of 735 bases (56.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3844_length_735_cov_8.983713:1-735 [pilon] Processing NODE_5619_length_569_cov_3.758929:1-569 [pilon] NODE_3319_length_812_cov_2.800289:1-812 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 62, Coverage: 9, minDepth: 5 [pilon] Confirmed 530 of 812 bases (65.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3319_length_812_cov_2.800289:1-812 [pilon] Processing NODE_3393_length_799_cov_2.169617:1-799 [pilon] NODE_410_length_2034_cov_2.726085:1-2034 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 148, Coverage: 9, minDepth: 5 [pilon] Confirmed 1268 of 2034 bases (62.34%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_410_length_2034_cov_2.726085:1-2034 [pilon] Processing NODE_5858_length_551_cov_2.155814:1-551 [pilon] NODE_8639_length_386_cov_14.984906:1-386 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 98, Coverage: 9, minDepth: 5 [pilon] Confirmed 238 of 386 bases (61.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8639_length_386_cov_14.984906:1-386 [pilon] Processing NODE_11895_length_249_cov_21.101562:1-249 [pilon] NODE_4457_length_665_cov_20.669118:1-665 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 260, Coverage: 26, minDepth: 7 [pilon] Confirmed 535 of 665 bases (80.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4457_length_665_cov_20.669118:1-665 [pilon] NODE_13781_length_243_cov_15.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13781_length_243_cov_15.819672:1-243 [pilon] Processing NODE_7654_length_435_cov_10.691083:1-435 [pilon] Processing NODE_7260_length_456_cov_32.226866:1-456 [pilon] NODE_1067_length_1456_cov_29.372285:1-1456 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 1008, Coverage: 78, minDepth: 20 [pilon] Confirmed 1067 of 1456 bases (73.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1067_length_1456_cov_29.372285:1-1456 [pilon] Processing NODE_14953_length_243_cov_6.098361:1-243 [pilon] NODE_10969_length_285_cov_19.432927:1-285 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 73, Coverage: 11, minDepth: 5 [pilon] Confirmed 221 of 285 bases (77.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10969_length_285_cov_19.432927:1-285 [pilon] Processing NODE_10088_length_321_cov_25.460000:1-321 [pilon] NODE_472_length_1947_cov_1.131982:1-1947 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 60, Coverage: 4, minDepth: 5 [pilon] Confirmed 728 of 1947 bases (37.39%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_472_length_1947_cov_1.131982:1-1947 [pilon] Processing NODE_4273_length_684_cov_19.722913:1-684 [pilon] NODE_9257_length_355_cov_20.957265:1-355 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 71, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 355 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9257_length_355_cov_20.957265:1-355 [pilon] Processing NODE_13873_length_243_cov_15.106557:1-243 [pilon] NODE_155_length_2700_cov_2.160140:1-2700 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 172, Coverage: 8, minDepth: 5 [pilon] Confirmed 2061 of 2700 bases (76.33%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_155_length_2700_cov_2.160140:1-2700 [pilon] Processing NODE_2325_length_1005_cov_10.355204:1-1005 [pilon] NODE_14645_length_243_cov_9.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14645_length_243_cov_9.065574:1-243 [pilon] Processing NODE_14860_length_243_cov_7.057377:1-243 [pilon] NODE_5630_length_568_cov_16.941834:1-568 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 182, Coverage: 25, minDepth: 6 [pilon] Confirmed 378 of 568 bases (66.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5630_length_568_cov_16.941834:1-568 [pilon] Processing NODE_11927_length_249_cov_8.320312:1-249 [pilon] NODE_6988_length_472_cov_10.532764:1-472 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 101, Coverage: 13, minDepth: 5 [pilon] Confirmed 328 of 472 bases (69.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6988_length_472_cov_10.532764:1-472 [pilon] Processing NODE_9192_length_357_cov_29.470339:1-357 [pilon] NODE_7641_length_435_cov_34.783439:1-435 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 231, Coverage: 30, minDepth: 8 [pilon] Confirmed 272 of 435 bases (62.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7641_length_435_cov_34.783439:1-435 [pilon] Processing NODE_2349_length_1001_cov_13.861364:1-1001 [pilon] NODE_12441_length_243_cov_30.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12441_length_243_cov_30.106557:1-243 [pilon] Processing NODE_699_length_1705_cov_4.745581:1-1705 [pilon] NODE_9059_length_363_cov_26.219008:1-363 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 129, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 363 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9059_length_363_cov_26.219008:1-363 [pilon] Processing NODE_11135_length_279_cov_5.689873:1-279 [pilon] NODE_5773_length_557_cov_45.713303:1-557 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 456, Coverage: 66, minDepth: 17 [pilon] Confirmed 454 of 557 bases (81.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5773_length_557_cov_45.713303:1-557 [pilon] Processing NODE_10752_length_295_cov_19.683908:1-295 [pilon] NODE_6384_length_511_cov_39.320513:1-511 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 317, Coverage: 55, minDepth: 14 [pilon] Confirmed 438 of 511 bases (85.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6384_length_511_cov_39.320513:1-511 [pilon] Processing NODE_5401_length_584_cov_13.470842:1-584 [pilon] NODE_12891_length_243_cov_24.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12891_length_243_cov_24.155738:1-243 [pilon] Processing NODE_12886_length_243_cov_24.180328:1-243 [pilon] NODE_5879_length_549_cov_18.570093:1-549 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 180, Coverage: 27, minDepth: 7 [pilon] Confirmed 450 of 549 bases (81.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5879_length_549_cov_18.570093:1-549 [pilon] Processing NODE_3752_length_747_cov_10.594249:1-747 [pilon] NODE_3393_length_799_cov_2.169617:1-799 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 52, Coverage: 8, minDepth: 5 [pilon] Confirmed 533 of 799 bases (66.71%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3393_length_799_cov_2.169617:1-799 [pilon] Processing NODE_13542_length_243_cov_17.975410:1-243 [pilon] NODE_5323_length_591_cov_2.257447:1-591 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 335 of 591 bases (56.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5323_length_591_cov_2.257447:1-591 [pilon] Processing NODE_2662_length_935_cov_11.914005:1-935 [pilon] NODE_12828_length_243_cov_24.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12828_length_243_cov_24.778689:1-243 [pilon] Processing NODE_169_length_2609_cov_3.611334:1-2609 [pilon] NODE_45_length_3798_cov_15.249932:1-3798 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 1277, Coverage: 44, minDepth: 11 [pilon] Confirmed 3162 of 3798 bases (83.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_45_length_3798_cov_15.249932:1-3798 [pilon] Processing NODE_10975_length_285_cov_17.384146:1-285 [pilon] NODE_8853_length_374_cov_25.577075:1-374 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 169, Coverage: 29, minDepth: 7 [pilon] Confirmed 332 of 374 bases (88.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8853_length_374_cov_25.577075:1-374 [pilon] Processing NODE_7355_length_450_cov_19.617021:1-450 [pilon] NODE_11895_length_249_cov_21.101562:1-249 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 53, Coverage: 6, minDepth: 5 [pilon] Confirmed 147 of 249 bases (59.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11895_length_249_cov_21.101562:1-249 [pilon] Processing NODE_13776_length_243_cov_15.852459:1-243 [pilon] NODE_4479_length_663_cov_24.658672:1-663 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 317, Coverage: 49, minDepth: 12 [pilon] Confirmed 581 of 663 bases (87.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4479_length_663_cov_24.658672:1-663 [pilon] Processing NODE_11532_length_263_cov_5.830986:1-263 [pilon] NODE_11035_length_282_cov_16.043478:1-282 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 65, Coverage: 3, minDepth: 5 [pilon] Confirmed 103 of 282 bases (36.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11035_length_282_cov_16.043478:1-282 [pilon] Processing NODE_14162_length_243_cov_12.975410:1-243 [pilon] NODE_12579_length_243_cov_27.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12579_length_243_cov_27.786885:1-243 [pilon] Processing NODE_13182_length_243_cov_21.254098:1-243 [pilon] NODE_4204_length_693_cov_30.256993:1-693 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 492, Coverage: 69, minDepth: 17 [pilon] Confirmed 458 of 693 bases (66.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4204_length_693_cov_30.256993:1-693 [pilon] Processing NODE_14350_length_243_cov_11.459016:1-243 [pilon] NODE_14953_length_243_cov_6.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14953_length_243_cov_6.098361:1-243 [pilon] Processing NODE_14390_length_243_cov_11.131148:1-243 [pilon] NODE_5619_length_569_cov_3.758929:1-569 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 44, Coverage: 10, minDepth: 5 [pilon] Confirmed 384 of 569 bases (67.49%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5619_length_569_cov_3.758929:1-569 [pilon] Processing NODE_13936_length_243_cov_14.639344:1-243 [pilon] NODE_5858_length_551_cov_2.155814:1-551 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 28, Coverage: 7, minDepth: 5 [pilon] Confirmed 367 of 551 bases (66.61%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5858_length_551_cov_2.155814:1-551 [pilon] Processing NODE_5851_length_551_cov_24.927907:1-551 [pilon] NODE_7260_length_456_cov_32.226866:1-456 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 221, Coverage: 26, minDepth: 7 [pilon] Confirmed 278 of 456 bases (60.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7260_length_456_cov_32.226866:1-456 [pilon] Processing NODE_4092_length_706_cov_3.271795:1-706 [pilon] NODE_10088_length_321_cov_25.460000:1-321 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 107, Coverage: 5, minDepth: 5 [pilon] Confirmed 143 of 321 bases (44.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10088_length_321_cov_25.460000:1-321 [pilon] Processing NODE_8601_length_388_cov_17.550562:1-388 [pilon] NODE_7654_length_435_cov_10.691083:1-435 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 81, Coverage: 9, minDepth: 5 [pilon] Confirmed 225 of 435 bases (51.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7654_length_435_cov_10.691083:1-435 [pilon] Processing NODE_4321_length_678_cov_22.163375:1-678 [pilon] NODE_4273_length_684_cov_19.722913:1-684 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 300, Coverage: 29, minDepth: 7 [pilon] Confirmed 476 of 684 bases (69.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4273_length_684_cov_19.722913:1-684 [pilon] Processing NODE_406_length_2040_cov_20.593538:1-2040 [pilon] NODE_11927_length_249_cov_8.320312:1-249 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11927_length_249_cov_8.320312:1-249 [pilon] NODE_14860_length_243_cov_7.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_13873_length_243_cov_15.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13873_length_243_cov_15.106557:1-243 [pilon] Finished processing NODE_14860_length_243_cov_7.057377:1-243 [pilon] Processing NODE_12329_length_243_cov_32.606557:1-243 [pilon] Processing NODE_4400_length_671_cov_18.505455:1-671 [pilon] Processing NODE_11367_length_269_cov_9.094595:1-269 [pilon] NODE_2325_length_1005_cov_10.355204:1-1005 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 230, Coverage: 24, minDepth: 6 [pilon] Confirmed 796 of 1005 bases (79.20%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2325_length_1005_cov_10.355204:1-1005 [pilon] Processing NODE_4803_length_634_cov_10.773879:1-634 [pilon] NODE_9192_length_357_cov_29.470339:1-357 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 168, Coverage: 19, minDepth: 5 [pilon] Confirmed 238 of 357 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9192_length_357_cov_29.470339:1-357 [pilon] Processing NODE_569_length_1836_cov_18.441399:1-1836 [pilon] NODE_13542_length_243_cov_17.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13542_length_243_cov_17.975410:1-243 [pilon] Processing NODE_6402_length_510_cov_14.591260:1-510 [pilon] NODE_2349_length_1001_cov_13.861364:1-1001 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 313, Coverage: 30, minDepth: 8 [pilon] Confirmed 725 of 1001 bases (72.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2349_length_1001_cov_13.861364:1-1001 [pilon] Processing NODE_9264_length_355_cov_12.867521:1-355 [pilon] NODE_13776_length_243_cov_15.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13776_length_243_cov_15.852459:1-243 [pilon] Processing NODE_10531_length_303_cov_23.895604:1-303 [pilon] NODE_11135_length_279_cov_5.689873:1-279 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 23, Coverage: 2, minDepth: 5 [pilon] Confirmed 39 of 279 bases (13.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11135_length_279_cov_5.689873:1-279 [pilon] Processing NODE_3097_length_854_cov_2.023192:1-854 [pilon] NODE_10752_length_295_cov_19.683908:1-295 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 80, Coverage: 8, minDepth: 5 [pilon] Confirmed 229 of 295 bases (77.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10752_length_295_cov_19.683908:1-295 [pilon] Processing NODE_3424_length_795_cov_15.470326:1-795 [pilon] NODE_3752_length_747_cov_10.594249:1-747 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 179, Coverage: 17, minDepth: 5 [pilon] Confirmed 567 of 747 bases (75.90%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3752_length_747_cov_10.594249:1-747 [pilon] Processing NODE_15004_length_243_cov_5.377049:1-243 [pilon] NODE_5401_length_584_cov_13.470842:1-584 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 151, Coverage: 29, minDepth: 7 [pilon] Confirmed 440 of 584 bases (75.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5401_length_584_cov_13.470842:1-584 [pilon] NODE_14390_length_243_cov_11.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14390_length_243_cov_11.131148:1-243 [pilon] Processing NODE_7805_length_427_cov_2.542484:1-427 [pilon] Processing NODE_3698_length_754_cov_39.178515:1-754 [pilon] NODE_12886_length_243_cov_24.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12886_length_243_cov_24.180328:1-243 [pilon] Processing NODE_8314_length_404_cov_1.367491:1-404 [pilon] NODE_699_length_1705_cov_4.745581:1-1705 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 249, Coverage: 13, minDepth: 5 [pilon] Confirmed 1258 of 1705 bases (73.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_699_length_1705_cov_4.745581:1-1705 [pilon] Processing NODE_277_length_2288_cov_18.475773:1-2288 [pilon] NODE_7355_length_450_cov_19.617021:1-450 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 158, Coverage: 23, minDepth: 6 [pilon] Confirmed 306 of 450 bases (68.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7355_length_450_cov_19.617021:1-450 [pilon] Processing NODE_11041_length_282_cov_11.099379:1-282 [pilon] NODE_2662_length_935_cov_11.914005:1-935 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 246, Coverage: 30, minDepth: 8 [pilon] Confirmed 750 of 935 bases (80.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2662_length_935_cov_11.914005:1-935 [pilon] Processing NODE_3990_length_716_cov_3.505882:1-716 [pilon] NODE_11532_length_263_cov_5.830986:1-263 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 24, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 263 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11532_length_263_cov_5.830986:1-263 [pilon] Processing NODE_14486_length_243_cov_10.368852:1-243 [pilon] NODE_10975_length_285_cov_17.384146:1-285 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 52, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 285 bases (45.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10975_length_285_cov_17.384146:1-285 [pilon] Processing NODE_2240_length_1022_cov_24.900111:1-1022 [pilon] NODE_13182_length_243_cov_21.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13182_length_243_cov_21.254098:1-243 [pilon] Processing NODE_11381_length_268_cov_6.877551:1-268 [pilon] NODE_169_length_2609_cov_3.611334:1-2609 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 236, Coverage: 12, minDepth: 5 [pilon] Confirmed 2114 of 2609 bases (81.03%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_169_length_2609_cov_3.611334:1-2609 [pilon] Processing NODE_4974_length_620_cov_21.492986:1-620 [pilon] NODE_14162_length_243_cov_12.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14162_length_243_cov_12.975410:1-243 [pilon] Processing NODE_2193_length_1036_cov_2.550820:1-1036 [pilon] NODE_14350_length_243_cov_11.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14350_length_243_cov_11.459016:1-243 [pilon] Processing NODE_150_length_2727_cov_28.625863:1-2727 [pilon] NODE_13936_length_243_cov_14.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13936_length_243_cov_14.639344:1-243 [pilon] Processing NODE_14669_length_243_cov_8.860656:1-243 [pilon] NODE_5851_length_551_cov_24.927907:1-551 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 239, Coverage: 39, minDepth: 10 [pilon] Confirmed 455 of 551 bases (82.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5851_length_551_cov_24.927907:1-551 [pilon] Processing NODE_8002_length_418_cov_8.636364:1-418 [pilon] NODE_6402_length_510_cov_14.591260:1-510 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 129, Coverage: 15, minDepth: 5 [pilon] Confirmed 267 of 510 bases (52.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6402_length_510_cov_14.591260:1-510 [pilon] Processing NODE_12383_length_243_cov_31.409836:1-243 [pilon] NODE_4092_length_706_cov_3.271795:1-706 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 53, Coverage: 10, minDepth: 5 [pilon] Confirmed 542 of 706 bases (76.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4092_length_706_cov_3.271795:1-706 [pilon] Processing NODE_8994_length_367_cov_8.069106:1-367 [pilon] NODE_10531_length_303_cov_23.895604:1-303 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 94, Coverage: 11, minDepth: 5 [pilon] Confirmed 241 of 303 bases (79.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10531_length_303_cov_23.895604:1-303 [pilon] Processing NODE_6055_length_535_cov_27.830918:1-535 [pilon] NODE_8601_length_388_cov_17.550562:1-388 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 99, Coverage: 21, minDepth: 5 [pilon] Confirmed 298 of 388 bases (76.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8601_length_388_cov_17.550562:1-388 [pilon] Processing NODE_5376_length_586_cov_2.589247:1-586 [pilon] NODE_12329_length_243_cov_32.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12329_length_243_cov_32.606557:1-243 [pilon] Processing NODE_13703_length_243_cov_16.401639:1-243 [pilon] NODE_4803_length_634_cov_10.773879:1-634 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 123, Coverage: 16, minDepth: 5 [pilon] Confirmed 569 of 634 bases (89.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4803_length_634_cov_10.773879:1-634 [pilon] Processing NODE_9031_length_365_cov_12.610656:1-365 [pilon] NODE_3698_length_754_cov_39.178515:1-754 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 558, Coverage: 59, minDepth: 15 [pilon] Confirmed 591 of 754 bases (78.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3698_length_754_cov_39.178515:1-754 [pilon] Processing NODE_7859_length_424_cov_65.587459:1-424 [pilon] NODE_11367_length_269_cov_9.094595:1-269 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 32, Coverage: 3, minDepth: 5 [pilon] Confirmed 71 of 269 bases (26.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11367_length_269_cov_9.094595:1-269 [pilon] Processing NODE_14500_length_243_cov_10.303279:1-243 [pilon] NODE_4400_length_671_cov_18.505455:1-671 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 252, Coverage: 32, minDepth: 8 [pilon] Confirmed 561 of 671 bases (83.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4400_length_671_cov_18.505455:1-671 [pilon] Processing NODE_3196_length_833_cov_17.321629:1-833 [pilon] NODE_4321_length_678_cov_22.163375:1-678 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 292, Coverage: 32, minDepth: 8 [pilon] Confirmed 640 of 678 bases (94.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4321_length_678_cov_22.163375:1-678 [pilon] Processing NODE_1178_length_1407_cov_19.000778:1-1407 [pilon] NODE_406_length_2040_cov_20.593538:1-2040 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 917, Coverage: 40, minDepth: 10 [pilon] Confirmed 1866 of 2040 bases (91.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_406_length_2040_cov_20.593538:1-2040 [pilon] Processing NODE_5167_length_604_cov_18.908903:1-604 [pilon] NODE_9264_length_355_cov_12.867521:1-355 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 64, Coverage: 10, minDepth: 5 [pilon] Confirmed 259 of 355 bases (72.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9264_length_355_cov_12.867521:1-355 [pilon] Processing NODE_3166_length_839_cov_1.788301:1-839 [pilon] NODE_8314_length_404_cov_1.367491:1-404 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 11, Coverage: 4, minDepth: 5 [pilon] Confirmed 154 of 404 bases (38.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8314_length_404_cov_1.367491:1-404 [pilon] Processing NODE_11685_length_257_cov_10.433824:1-257 [pilon] NODE_569_length_1836_cov_18.441399:1-1836 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 725, Coverage: 51, minDepth: 13 [pilon] Confirmed 1463 of 1836 bases (79.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_569_length_1836_cov_18.441399:1-1836 [pilon] Processing NODE_6809_length_483_cov_0.723757:1-483 [pilon] NODE_3097_length_854_cov_2.023192:1-854 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 48, Coverage: 7, minDepth: 5 [pilon] Confirmed 443 of 854 bases (51.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3097_length_854_cov_2.023192:1-854 [pilon] Processing NODE_14304_length_243_cov_11.811475:1-243 [pilon] NODE_3424_length_795_cov_15.470326:1-795 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 264, Coverage: 34, minDepth: 9 [pilon] Confirmed 563 of 795 bases (70.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3424_length_795_cov_15.470326:1-795 [pilon] Processing NODE_4296_length_681_cov_48.375000:1-681 [pilon] NODE_15004_length_243_cov_5.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15004_length_243_cov_5.377049:1-243 [pilon] Processing NODE_9762_length_336_cov_12.102326:1-336 [pilon] NODE_11041_length_282_cov_11.099379:1-282 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 41, Coverage: 3, minDepth: 5 [pilon] Confirmed 100 of 282 bases (35.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11041_length_282_cov_11.099379:1-282 [pilon] Processing NODE_7316_length_452_cov_46.652568:1-452 [pilon] NODE_7805_length_427_cov_2.542484:1-427 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 24, Coverage: 7, minDepth: 5 [pilon] Confirmed 310 of 427 bases (72.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7805_length_427_cov_2.542484:1-427 [pilon] Processing NODE_13105_length_243_cov_21.901639:1-243 [pilon] NODE_3990_length_716_cov_3.505882:1-716 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 56, Coverage: 9, minDepth: 5 [pilon] Confirmed 521 of 716 bases (72.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3990_length_716_cov_3.505882:1-716 [pilon] Processing NODE_829_length_1611_cov_3.428859:1-1611 [pilon] NODE_277_length_2288_cov_18.475773:1-2288 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 1021, Coverage: 43, minDepth: 11 [pilon] Confirmed 1945 of 2288 bases (85.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_277_length_2288_cov_18.475773:1-2288 [pilon] Processing NODE_1527_length_1249_cov_13.789007:1-1249 [pilon] NODE_14486_length_243_cov_10.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14486_length_243_cov_10.368852:1-243 [pilon] NODE_11381_length_268_cov_6.877551:1-268 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 268 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_15093_length_225_cov_10.144231:1-225 [pilon] Finished processing NODE_11381_length_268_cov_6.877551:1-268 [pilon] Processing NODE_9448_length_348_cov_16.550661:1-348 [pilon] NODE_2240_length_1022_cov_24.900111:1-1022 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 655, Coverage: 76, minDepth: 19 [pilon] Confirmed 795 of 1022 bases (77.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2240_length_1022_cov_24.900111:1-1022 [pilon] Processing NODE_5864_length_551_cov_0.362791:1-551 [pilon] NODE_2193_length_1036_cov_2.550820:1-1036 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 60, Coverage: 8, minDepth: 5 [pilon] Confirmed 669 of 1036 bases (64.58%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2193_length_1036_cov_2.550820:1-1036 [pilon] Processing NODE_14043_length_243_cov_13.901639:1-243 [pilon] NODE_4974_length_620_cov_21.492986:1-620 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 280, Coverage: 38, minDepth: 10 [pilon] Confirmed 543 of 620 bases (87.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4974_length_620_cov_21.492986:1-620 [pilon] Processing NODE_5343_length_589_cov_17.965812:1-589 [pilon] NODE_12383_length_243_cov_31.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12383_length_243_cov_31.409836:1-243 [pilon] Processing NODE_15080_length_234_cov_7.150442:1-234 [pilon] NODE_6055_length_535_cov_27.830918:1-535 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 270, Coverage: 33, minDepth: 8 [pilon] Confirmed 382 of 535 bases (71.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6055_length_535_cov_27.830918:1-535 [pilon] Processing NODE_5714_length_562_cov_19.301587:1-562 [pilon] NODE_150_length_2727_cov_28.625863:1-2727 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 1701, Coverage: 76, minDepth: 19 [pilon] Confirmed 1907 of 2727 bases (69.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_150_length_2727_cov_28.625863:1-2727 [pilon] Processing NODE_3132_length_846_cov_1.217931:1-846 [pilon] NODE_7859_length_424_cov_65.587459:1-424 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 442, Coverage: 76, minDepth: 19 [pilon] Confirmed 381 of 424 bases (89.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7859_length_424_cov_65.587459:1-424 [pilon] Processing NODE_2932_length_885_cov_21.143979:1-885 [pilon] NODE_8002_length_418_cov_8.636364:1-418 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 75, Coverage: 5, minDepth: 5 [pilon] Confirmed 180 of 418 bases (43.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8002_length_418_cov_8.636364:1-418 [pilon] Processing NODE_10909_length_288_cov_16.568862:1-288 [pilon] NODE_8994_length_367_cov_8.069106:1-367 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 65, Coverage: 9, minDepth: 5 [pilon] Confirmed 282 of 367 bases (76.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8994_length_367_cov_8.069106:1-367 [pilon] Processing NODE_8168_length_410_cov_15.965398:1-410 [pilon] NODE_14669_length_243_cov_8.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14669_length_243_cov_8.860656:1-243 [pilon] Processing NODE_8694_length_382_cov_47.363985:1-382 [pilon] NODE_5376_length_586_cov_2.589247:1-586 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 42, Coverage: 9, minDepth: 5 [pilon] Confirmed 373 of 586 bases (63.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5376_length_586_cov_2.589247:1-586 [pilon] Processing NODE_6049_length_536_cov_3.180723:1-536 [pilon] NODE_13703_length_243_cov_16.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13703_length_243_cov_16.401639:1-243 [pilon] Processing NODE_9686_length_339_cov_9.807339:1-339 [pilon] NODE_9031_length_365_cov_12.610656:1-365 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 77, Coverage: 6, minDepth: 5 [pilon] Confirmed 264 of 365 bases (72.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9031_length_365_cov_12.610656:1-365 [pilon] Processing NODE_2571_length_953_cov_4.426683:1-953 [pilon] NODE_5167_length_604_cov_18.908903:1-604 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 214, Coverage: 27, minDepth: 7 [pilon] Confirmed 499 of 604 bases (82.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5167_length_604_cov_18.908903:1-604 [pilon] Processing NODE_8165_length_410_cov_27.384083:1-410 [pilon] NODE_3196_length_833_cov_17.321629:1-833 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 353, Coverage: 44, minDepth: 11 [pilon] Confirmed 687 of 833 bases (82.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3196_length_833_cov_17.321629:1-833 [pilon] Processing NODE_1797_length_1147_cov_27.473684:1-1147 [pilon] NODE_14500_length_243_cov_10.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14500_length_243_cov_10.303279:1-243 [pilon] Processing NODE_6327_length_515_cov_12.883249:1-515 [pilon] NODE_1178_length_1407_cov_19.000778:1-1407 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 586, Coverage: 48, minDepth: 12 [pilon] Confirmed 929 of 1407 bases (66.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1178_length_1407_cov_19.000778:1-1407 [pilon] Processing NODE_14840_length_243_cov_7.336066:1-243 [pilon] NODE_15080_length_234_cov_7.150442:1-234 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 234 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15080_length_234_cov_7.150442:1-234 [pilon] Processing NODE_5490_length_578_cov_21.065646:1-578 [pilon] NODE_11685_length_257_cov_10.433824:1-257 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 32, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 257 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11685_length_257_cov_10.433824:1-257 [pilon] Processing NODE_7698_length_432_cov_29.202572:1-432 [pilon] NODE_3166_length_839_cov_1.788301:1-839 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 43, Coverage: 7, minDepth: 5 [pilon] Confirmed 478 of 839 bases (56.97%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3166_length_839_cov_1.788301:1-839 [pilon] Processing NODE_542_length_1865_cov_2.801032:1-1865 [pilon] NODE_14304_length_243_cov_11.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14304_length_243_cov_11.811475:1-243 [pilon] Processing NODE_13572_length_243_cov_17.729508:1-243 [pilon] NODE_5714_length_562_cov_19.301587:1-562 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 223, Coverage: 25, minDepth: 6 [pilon] Confirmed 375 of 562 bases (66.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5714_length_562_cov_19.301587:1-562 [pilon] Processing NODE_7534_length_441_cov_24.278125:1-441 [pilon] NODE_9762_length_336_cov_12.102326:1-336 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 35, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 336 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_6809_length_483_cov_0.723757:1-483 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 483 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6809_length_483_cov_0.723757:1-483 [pilon] Finished processing NODE_9762_length_336_cov_12.102326:1-336 [pilon] Processing NODE_5357_length_588_cov_1.477516:1-588 [pilon] Processing NODE_13810_length_243_cov_15.565574:1-243 [pilon] NODE_4296_length_681_cov_48.375000:1-681 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 610, Coverage: 81, minDepth: 20 [pilon] Confirmed 619 of 681 bases (90.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4296_length_681_cov_48.375000:1-681 [pilon] Processing NODE_990_length_1503_cov_4.354559:1-1503 [pilon] NODE_7316_length_452_cov_46.652568:1-452 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 363, Coverage: 57, minDepth: 14 [pilon] Confirmed 398 of 452 bases (88.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7316_length_452_cov_46.652568:1-452 [pilon] Processing NODE_9220_length_357_cov_15.326271:1-357 [pilon] NODE_1527_length_1249_cov_13.789007:1-1249 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 377, Coverage: 30, minDepth: 8 [pilon] Confirmed 1057 of 1249 bases (84.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1527_length_1249_cov_13.789007:1-1249 [pilon] Processing NODE_14819_length_243_cov_7.508197:1-243 [pilon] NODE_13105_length_243_cov_21.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13105_length_243_cov_21.901639:1-243 [pilon] Processing NODE_1264_length_1357_cov_15.171521:1-1357 [pilon] NODE_5864_length_551_cov_0.362791:1-551 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 551 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5864_length_551_cov_0.362791:1-551 [pilon] Processing NODE_2171_length_1040_cov_52.459195:1-1040 [pilon] NODE_2932_length_885_cov_21.143979:1-885 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 404, Coverage: 26, minDepth: 7 [pilon] Confirmed 710 of 885 bases (80.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2932_length_885_cov_21.143979:1-885 [pilon] Processing NODE_4591_length_654_cov_16.118199:1-654 [pilon] NODE_15093_length_225_cov_10.144231:1-225 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 225 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15093_length_225_cov_10.144231:1-225 [pilon] Processing NODE_8467_length_396_cov_9.505455:1-396 [pilon] NODE_14043_length_243_cov_13.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14043_length_243_cov_13.901639:1-243 [pilon] Processing NODE_7843_length_425_cov_13.434211:1-425 [pilon] NODE_9448_length_348_cov_16.550661:1-348 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 45, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 348 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9448_length_348_cov_16.550661:1-348 [pilon] Processing NODE_3324_length_811_cov_15.708696:1-811 [pilon] NODE_829_length_1611_cov_3.428859:1-1611 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 147, Coverage: 11, minDepth: 5 [pilon] Confirmed 1427 of 1611 bases (88.58%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_829_length_1611_cov_3.428859:1-1611 [pilon] Processing NODE_3284_length_817_cov_30.543103:1-817 [pilon] NODE_5343_length_589_cov_17.965812:1-589 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 253, Coverage: 24, minDepth: 6 [pilon] Confirmed 406 of 589 bases (68.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5343_length_589_cov_17.965812:1-589 [pilon] Processing NODE_9392_length_351_cov_8.047826:1-351 [pilon] NODE_3132_length_846_cov_1.217931:1-846 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 34, Coverage: 5, minDepth: 5 [pilon] Confirmed 414 of 846 bases (48.94%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3132_length_846_cov_1.217931:1-846 [pilon] Processing NODE_13187_length_243_cov_21.213115:1-243 [pilon] NODE_6327_length_515_cov_12.883249:1-515 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 103, Coverage: 17, minDepth: 5 [pilon] Confirmed 400 of 515 bases (77.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6327_length_515_cov_12.883249:1-515 [pilon] Processing NODE_3810_length_739_cov_20.058252:1-739 [pilon] NODE_8168_length_410_cov_15.965398:1-410 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 99, Coverage: 12, minDepth: 5 [pilon] Confirmed 289 of 410 bases (70.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8168_length_410_cov_15.965398:1-410 [pilon] Processing NODE_5335_length_590_cov_8.230277:1-590 [pilon] NODE_10909_length_288_cov_16.568862:1-288 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 66, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10909_length_288_cov_16.568862:1-288 [pilon] Processing NODE_1533_length_1248_cov_8.529725:1-1248 [pilon] NODE_6049_length_536_cov_3.180723:1-536 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 40, Coverage: 10, minDepth: 5 [pilon] Confirmed 403 of 536 bases (75.19%) [pilon] Corrected 1 snps; 1 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6049_length_536_cov_3.180723:1-536 [pilon] Processing NODE_1368_length_1311_cov_2.475630:1-1311 [pilon] NODE_9686_length_339_cov_9.807339:1-339 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 55, Coverage: 4, minDepth: 5 [pilon] Confirmed 159 of 339 bases (46.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9686_length_339_cov_9.807339:1-339 [pilon] Processing NODE_8374_length_402_cov_0.918149:1-402 [pilon] NODE_5490_length_578_cov_21.065646:1-578 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 256, Coverage: 30, minDepth: 8 [pilon] Confirmed 523 of 578 bases (90.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5490_length_578_cov_21.065646:1-578 [pilon] Processing NODE_4042_length_711_cov_13.269492:1-711 [pilon] NODE_2571_length_953_cov_4.426683:1-953 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 81, Coverage: 11, minDepth: 5 [pilon] Confirmed 709 of 953 bases (74.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2571_length_953_cov_4.426683:1-953 [pilon] Processing NODE_10929_length_287_cov_24.006024:1-287 [pilon] NODE_8694_length_382_cov_47.363985:1-382 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 294, Coverage: 44, minDepth: 11 [pilon] Confirmed 338 of 382 bases (88.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8694_length_382_cov_47.363985:1-382 [pilon] Processing NODE_625_length_1777_cov_26.458333:1-1777 [pilon] NODE_8165_length_410_cov_27.384083:1-410 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 189, Coverage: 29, minDepth: 7 [pilon] Confirmed 372 of 410 bases (90.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8165_length_410_cov_27.384083:1-410 [pilon] Processing NODE_9267_length_355_cov_10.534188:1-355 [pilon] NODE_1797_length_1147_cov_27.473684:1-1147 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 621, Coverage: 55, minDepth: 14 [pilon] Confirmed 930 of 1147 bases (81.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1797_length_1147_cov_27.473684:1-1147 [pilon] Processing NODE_1981_length_1092_cov_5.492276:1-1092 [pilon] NODE_4591_length_654_cov_16.118199:1-654 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 198, Coverage: 15, minDepth: 5 [pilon] Confirmed 405 of 654 bases (61.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4591_length_654_cov_16.118199:1-654 [pilon] Processing NODE_8624_length_387_cov_16.251880:1-387 [pilon] NODE_13810_length_243_cov_15.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13810_length_243_cov_15.565574:1-243 [pilon] Processing NODE_2789_length_911_cov_1.521519:1-911 [pilon] NODE_13572_length_243_cov_17.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13572_length_243_cov_17.729508:1-243 [pilon] Processing NODE_6923_length_476_cov_14.166197:1-476 [pilon] NODE_7698_length_432_cov_29.202572:1-432 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 227, Coverage: 16, minDepth: 5 [pilon] Confirmed 195 of 432 bases (45.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7698_length_432_cov_29.202572:1-432 [pilon] Processing NODE_1857_length_1126_cov_21.551244:1-1126 [pilon] NODE_990_length_1503_cov_4.354559:1-1503 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 139, Coverage: 11, minDepth: 5 [pilon] Confirmed 1136 of 1503 bases (75.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_990_length_1503_cov_4.354559:1-1503 [pilon] Processing NODE_7524_length_442_cov_1.252336:1-442 [pilon] NODE_14819_length_243_cov_7.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14819_length_243_cov_7.508197:1-243 [pilon] Processing NODE_6480_length_505_cov_2.617188:1-505 [pilon] NODE_7534_length_441_cov_24.278125:1-441 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 134, Coverage: 8, minDepth: 5 [pilon] Confirmed 250 of 441 bases (56.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7534_length_441_cov_24.278125:1-441 [pilon] Processing NODE_5924_length_546_cov_12.101176:1-546 [pilon] NODE_14840_length_243_cov_7.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14840_length_243_cov_7.336066:1-243 [pilon] Processing NODE_7903_length_423_cov_1.480132:1-423 [pilon] NODE_542_length_1865_cov_2.801032:1-1865 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 127, Coverage: 9, minDepth: 5 [pilon] Confirmed 1270 of 1865 bases (68.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_542_length_1865_cov_2.801032:1-1865 [pilon] Processing NODE_6241_length_522_cov_0.613466:1-522 [pilon] NODE_9220_length_357_cov_15.326271:1-357 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 76, Coverage: 13, minDepth: 5 [pilon] Confirmed 268 of 357 bases (75.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9220_length_357_cov_15.326271:1-357 [pilon] Processing NODE_142_length_2772_cov_16.791399:1-2772 [pilon] NODE_7843_length_425_cov_13.434211:1-425 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 86, Coverage: 17, minDepth: 5 [pilon] Confirmed 361 of 425 bases (84.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7843_length_425_cov_13.434211:1-425 [pilon] Processing NODE_10740_length_296_cov_31.114286:1-296 [pilon] NODE_5357_length_588_cov_1.477516:1-588 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 263 of 588 bases (44.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5357_length_588_cov_1.477516:1-588 [pilon] Processing NODE_9843_length_333_cov_9.584906:1-333 [pilon] NODE_1264_length_1357_cov_15.171521:1-1357 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 442, Coverage: 34, minDepth: 9 [pilon] Confirmed 1010 of 1357 bases (74.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1264_length_1357_cov_15.171521:1-1357 [pilon] Processing NODE_12883_length_243_cov_24.221311:1-243 [pilon] NODE_3324_length_811_cov_15.708696:1-811 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 266, Coverage: 21, minDepth: 5 [pilon] Confirmed 589 of 811 bases (72.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3324_length_811_cov_15.708696:1-811 [pilon] Processing NODE_11839_length_252_cov_11.198473:1-252 [pilon] NODE_8467_length_396_cov_9.505455:1-396 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 253 of 396 bases (63.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8467_length_396_cov_9.505455:1-396 [pilon] Processing NODE_11797_length_253_cov_5.674242:1-253 [pilon] NODE_2171_length_1040_cov_52.459195:1-1040 log: [pilon] frags shovill.bam: coverage 115 [pilon] Total Reads: 1075, Coverage: 115, minDepth: 29 [pilon] Confirmed 903 of 1040 bases (86.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2171_length_1040_cov_52.459195:1-1040 [pilon] Processing NODE_7119_length_465_cov_0.784884:1-465 [pilon] NODE_3284_length_817_cov_30.543103:1-817 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 507, Coverage: 43, minDepth: 11 [pilon] Confirmed 624 of 817 bases (76.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3284_length_817_cov_30.543103:1-817 [pilon] Processing NODE_14444_length_243_cov_10.721311:1-243 [pilon] NODE_9392_length_351_cov_8.047826:1-351 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 36, Coverage: 2, minDepth: 5 [pilon] Confirmed 104 of 351 bases (29.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9392_length_351_cov_8.047826:1-351 [pilon] Processing NODE_3298_length_815_cov_16.397695:1-815 [pilon] NODE_3810_length_739_cov_20.058252:1-739 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 319, Coverage: 34, minDepth: 9 [pilon] Confirmed 544 of 739 bases (73.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3810_length_739_cov_20.058252:1-739 [pilon] Processing NODE_7390_length_449_cov_1.128049:1-449 [pilon] NODE_4042_length_711_cov_13.269492:1-711 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 175, Coverage: 19, minDepth: 5 [pilon] Confirmed 549 of 711 bases (77.22%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4042_length_711_cov_13.269492:1-711 [pilon] Processing NODE_12715_length_243_cov_26.040984:1-243 [pilon] NODE_13187_length_243_cov_21.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13187_length_243_cov_21.213115:1-243 [pilon] Processing NODE_7394_length_448_cov_68.446483:1-448 [pilon] NODE_1533_length_1248_cov_8.529725:1-1248 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 244, Coverage: 21, minDepth: 5 [pilon] Confirmed 1081 of 1248 bases (86.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1533_length_1248_cov_8.529725:1-1248 [pilon] Processing NODE_4333_length_677_cov_39.097122:1-677 [pilon] NODE_5335_length_590_cov_8.230277:1-590 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 127, Coverage: 13, minDepth: 5 [pilon] Confirmed 435 of 590 bases (73.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5335_length_590_cov_8.230277:1-590 [pilon] Processing NODE_11756_length_255_cov_14.708955:1-255 [pilon] NODE_1981_length_1092_cov_5.492276:1-1092 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 160, Coverage: 11, minDepth: 5 [pilon] Confirmed 496 of 1092 bases (45.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1981_length_1092_cov_5.492276:1-1092 [pilon] Processing NODE_10249_length_315_cov_12.871134:1-315 [pilon] NODE_1368_length_1311_cov_2.475630:1-1311 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 72, Coverage: 7, minDepth: 5 [pilon] Confirmed 663 of 1311 bases (50.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1368_length_1311_cov_2.475630:1-1311 [pilon] Processing NODE_7566_length_440_cov_3.717868:1-440 [pilon] NODE_8374_length_402_cov_0.918149:1-402 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 402 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8374_length_402_cov_0.918149:1-402 [pilon] Processing NODE_5508_length_576_cov_28.821978:1-576 [pilon] NODE_2789_length_911_cov_1.521519:1-911 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 46, Coverage: 7, minDepth: 5 [pilon] Confirmed 687 of 911 bases (75.41%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2789_length_911_cov_1.521519:1-911 [pilon] Processing NODE_10307_length_312_cov_36.062827:1-312 [pilon] NODE_10929_length_287_cov_24.006024:1-287 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 87, Coverage: 10, minDepth: 5 [pilon] Confirmed 220 of 287 bases (76.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10929_length_287_cov_24.006024:1-287 [pilon] Processing NODE_5306_length_592_cov_4.547771:1-592 [pilon] NODE_5924_length_546_cov_12.101176:1-546 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 104, Coverage: 19, minDepth: 5 [pilon] Confirmed 393 of 546 bases (71.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5924_length_546_cov_12.101176:1-546 [pilon] Processing NODE_8649_length_385_cov_25.488636:1-385 [pilon] NODE_9267_length_355_cov_10.534188:1-355 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 75, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 355 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9267_length_355_cov_10.534188:1-355 [pilon] Processing NODE_7052_length_468_cov_1.406340:1-468 [pilon] NODE_625_length_1777_cov_26.458333:1-1777 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1139, Coverage: 54, minDepth: 14 [pilon] Confirmed 1464 of 1777 bases (82.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_625_length_1777_cov_26.458333:1-1777 [pilon] Processing NODE_11945_length_247_cov_36.452381:1-247 [pilon] NODE_7524_length_442_cov_1.252336:1-442 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 145 of 442 bases (32.81%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7524_length_442_cov_1.252336:1-442 [pilon] Processing NODE_13221_length_243_cov_20.893443:1-243 [pilon] NODE_6480_length_505_cov_2.617188:1-505 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 29, Coverage: 6, minDepth: 5 [pilon] Confirmed 340 of 505 bases (67.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6480_length_505_cov_2.617188:1-505 [pilon] Processing NODE_7874_length_424_cov_0.881188:1-424 [pilon] NODE_8624_length_387_cov_16.251880:1-387 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 113, Coverage: 12, minDepth: 5 [pilon] Confirmed 307 of 387 bases (79.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8624_length_387_cov_16.251880:1-387 [pilon] Processing NODE_1938_length_1101_cov_23.133673:1-1101 [pilon] NODE_6923_length_476_cov_14.166197:1-476 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 111, Coverage: 19, minDepth: 5 [pilon] Confirmed 379 of 476 bases (79.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6923_length_476_cov_14.166197:1-476 [pilon] Processing NODE_8971_length_368_cov_12.769231:1-368 [pilon] NODE_1857_length_1126_cov_21.551244:1-1126 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 486, Coverage: 46, minDepth: 12 [pilon] Confirmed 881 of 1126 bases (78.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1857_length_1126_cov_21.551244:1-1126 [pilon] Processing NODE_5626_length_568_cov_43.550336:1-568 [pilon] NODE_12883_length_243_cov_24.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12883_length_243_cov_24.221311:1-243 [pilon] Processing NODE_3110_length_849_cov_36.368132:1-849 [pilon] NODE_6241_length_522_cov_0.613466:1-522 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 137 of 522 bases (26.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6241_length_522_cov_0.613466:1-522 [pilon] Processing NODE_10562_length_303_cov_8.626374:1-303 [pilon] NODE_11839_length_252_cov_11.198473:1-252 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 40, Coverage: 3, minDepth: 5 [pilon] Confirmed 86 of 252 bases (34.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11839_length_252_cov_11.198473:1-252 [pilon] Processing NODE_6324_length_515_cov_17.647208:1-515 [pilon] NODE_7903_length_423_cov_1.480132:1-423 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 135 of 423 bases (31.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7903_length_423_cov_1.480132:1-423 [pilon] NODE_10740_length_296_cov_31.114286:1-296 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 110, Coverage: 7, minDepth: 5 [pilon] Confirmed 177 of 296 bases (59.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10740_length_296_cov_31.114286:1-296 [pilon] Processing NODE_4570_length_656_cov_4.308411:1-656 [pilon] Processing NODE_3291_length_816_cov_17.804317:1-816 [pilon] NODE_9843_length_333_cov_9.584906:1-333 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 53, Coverage: 3, minDepth: 5 [pilon] Confirmed 59 of 333 bases (17.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9843_length_333_cov_9.584906:1-333 [pilon] Processing NODE_1972_length_1093_cov_24.877572:1-1093 [pilon] NODE_11797_length_253_cov_5.674242:1-253 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 253 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11797_length_253_cov_5.674242:1-253 [pilon] Processing NODE_1204_length_1393_cov_31.854560:1-1393 [pilon] NODE_7119_length_465_cov_0.784884:1-465 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 77 of 465 bases (16.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7119_length_465_cov_0.784884:1-465 [pilon] Processing NODE_7416_length_447_cov_18.981595:1-447 [pilon] NODE_10249_length_315_cov_12.871134:1-315 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 44, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10249_length_315_cov_12.871134:1-315 [pilon] Processing NODE_9901_length_330_cov_16.081340:1-330 [pilon] NODE_14444_length_243_cov_10.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14444_length_243_cov_10.721311:1-243 [pilon] Processing NODE_14539_length_243_cov_9.975410:1-243 [pilon] NODE_142_length_2772_cov_16.791399:1-2772 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 1072, Coverage: 38, minDepth: 10 [pilon] Confirmed 2397 of 2772 bases (86.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_142_length_2772_cov_16.791399:1-2772 [pilon] Processing NODE_9963_length_327_cov_19.834951:1-327 [pilon] NODE_10307_length_312_cov_36.062827:1-312 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 144, Coverage: 20, minDepth: 5 [pilon] Confirmed 263 of 312 bases (84.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10307_length_312_cov_36.062827:1-312 [pilon] Processing NODE_6841_length_481_cov_2.866667:1-481 [pilon] NODE_12715_length_243_cov_26.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12715_length_243_cov_26.040984:1-243 [pilon] Processing NODE_1393_length_1299_cov_1.904924:1-1299 [pilon] NODE_3298_length_815_cov_16.397695:1-815 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 268, Coverage: 34, minDepth: 9 [pilon] Confirmed 610 of 815 bases (74.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3298_length_815_cov_16.397695:1-815 [pilon] Processing NODE_4019_length_714_cov_0.925801:1-714 [pilon] NODE_7390_length_449_cov_1.128049:1-449 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 110 of 449 bases (24.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7390_length_449_cov_1.128049:1-449 [pilon] Processing NODE_6872_length_479_cov_29.153631:1-479 [pilon] NODE_7394_length_448_cov_68.446483:1-448 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 494, Coverage: 85, minDepth: 21 [pilon] Confirmed 385 of 448 bases (85.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7394_length_448_cov_68.446483:1-448 [pilon] Processing NODE_3642_length_762_cov_66.355694:1-762 [pilon] NODE_8649_length_385_cov_25.488636:1-385 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 159, Coverage: 27, minDepth: 7 [pilon] Confirmed 337 of 385 bases (87.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8649_length_385_cov_25.488636:1-385 [pilon] Processing NODE_1317_length_1333_cov_2.816832:1-1333 [pilon] NODE_7566_length_440_cov_3.717868:1-440 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 440 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7566_length_440_cov_3.717868:1-440 [pilon] Processing NODE_9722_length_337_cov_7.361111:1-337 [pilon] NODE_5508_length_576_cov_28.821978:1-576 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 297, Coverage: 36, minDepth: 9 [pilon] Confirmed 507 of 576 bases (88.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5508_length_576_cov_28.821978:1-576 [pilon] Processing NODE_13792_length_243_cov_15.762295:1-243 [pilon] NODE_4333_length_677_cov_39.097122:1-677 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 434, Coverage: 61, minDepth: 15 [pilon] Confirmed 595 of 677 bases (87.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4333_length_677_cov_39.097122:1-677 [pilon] Processing NODE_5_length_7330_cov_21.827160:1-7330 [pilon] NODE_11756_length_255_cov_14.708955:1-255 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 46, Coverage: 6, minDepth: 5 [pilon] Confirmed 138 of 255 bases (54.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11756_length_255_cov_14.708955:1-255 [pilon] Processing NODE_8085_length_414_cov_15.894198:1-414 [pilon] NODE_5306_length_592_cov_4.547771:1-592 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 46, Coverage: 10, minDepth: 5 [pilon] Confirmed 429 of 592 bases (72.47%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5306_length_592_cov_4.547771:1-592 [pilon] Processing NODE_10426_length_307_cov_24.865591:1-307 [pilon] NODE_7052_length_468_cov_1.406340:1-468 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 34, Coverage: 5, minDepth: 5 [pilon] Confirmed 287 of 468 bases (61.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7052_length_468_cov_1.406340:1-468 [pilon] Processing NODE_9648_length_339_cov_25.623853:1-339 [pilon] NODE_13221_length_243_cov_20.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13221_length_243_cov_20.893443:1-243 [pilon] Processing NODE_1695_length_1182_cov_15.573044:1-1182 [pilon] NODE_11945_length_247_cov_36.452381:1-247 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 104, Coverage: 6, minDepth: 5 [pilon] Confirmed 189 of 247 bases (76.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11945_length_247_cov_36.452381:1-247 [pilon] Processing NODE_12795_length_243_cov_25.057377:1-243 [pilon] NODE_8971_length_368_cov_12.769231:1-368 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 81, Coverage: 9, minDepth: 5 [pilon] Confirmed 276 of 368 bases (75.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8971_length_368_cov_12.769231:1-368 [pilon] Processing NODE_13856_length_243_cov_15.262295:1-243 [pilon] NODE_7874_length_424_cov_0.881188:1-424 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 92 of 424 bases (21.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7874_length_424_cov_0.881188:1-424 [pilon] Processing NODE_12154_length_243_cov_39.106557:1-243 [pilon] NODE_1938_length_1101_cov_23.133673:1-1101 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 517, Coverage: 39, minDepth: 10 [pilon] Confirmed 934 of 1101 bases (84.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1938_length_1101_cov_23.133673:1-1101 [pilon] Processing NODE_7527_length_442_cov_1.040498:1-442 [pilon] NODE_5626_length_568_cov_43.550336:1-568 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 487, Coverage: 62, minDepth: 16 [pilon] Confirmed 384 of 568 bases (67.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5626_length_568_cov_43.550336:1-568 [pilon] Processing NODE_14165_length_243_cov_12.942623:1-243 [pilon] NODE_9901_length_330_cov_16.081340:1-330 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 72, Coverage: 4, minDepth: 5 [pilon] Confirmed 134 of 330 bases (40.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9901_length_330_cov_16.081340:1-330 [pilon] Processing NODE_4278_length_684_cov_2.113677:1-684 [pilon] NODE_6324_length_515_cov_17.647208:1-515 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 167, Coverage: 10, minDepth: 5 [pilon] Confirmed 353 of 515 bases (68.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6324_length_515_cov_17.647208:1-515 [pilon] Processing NODE_14378_length_243_cov_11.229508:1-243 [pilon] NODE_10562_length_303_cov_8.626374:1-303 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 303 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10562_length_303_cov_8.626374:1-303 [pilon] Processing NODE_8140_length_411_cov_17.596552:1-411 [pilon] NODE_3110_length_849_cov_36.368132:1-849 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 608, Coverage: 71, minDepth: 18 [pilon] Confirmed 776 of 849 bases (91.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3110_length_849_cov_36.368132:1-849 [pilon] Processing NODE_10874_length_289_cov_11.964286:1-289 [pilon] NODE_1204_length_1393_cov_31.854560:1-1393 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 1111, Coverage: 53, minDepth: 13 [pilon] Confirmed 1217 of 1393 bases (87.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1204_length_1393_cov_31.854560:1-1393 [pilon] Processing NODE_1896_length_1114_cov_22.548842:1-1114 [pilon] NODE_1972_length_1093_cov_24.877572:1-1093 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 631, Coverage: 65, minDepth: 16 [pilon] Confirmed 808 of 1093 bases (73.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1972_length_1093_cov_24.877572:1-1093 [pilon] Processing NODE_8809_length_377_cov_4.125000:1-377 [pilon] NODE_7416_length_447_cov_18.981595:1-447 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 148, Coverage: 20, minDepth: 5 [pilon] Confirmed 313 of 447 bases (70.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7416_length_447_cov_18.981595:1-447 [pilon] Processing NODE_12432_length_243_cov_30.295082:1-243 [pilon] NODE_3291_length_816_cov_17.804317:1-816 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 309, Coverage: 27, minDepth: 7 [pilon] Confirmed 703 of 816 bases (86.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3291_length_816_cov_17.804317:1-816 [pilon] Processing NODE_8416_length_398_cov_64.638989:1-398 [pilon] NODE_6841_length_481_cov_2.866667:1-481 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 25, Coverage: 6, minDepth: 5 [pilon] Confirmed 319 of 481 bases (66.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6841_length_481_cov_2.866667:1-481 [pilon] Processing NODE_8378_length_401_cov_30.885714:1-401 [pilon] NODE_4570_length_656_cov_4.308411:1-656 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 62, Coverage: 12, minDepth: 5 [pilon] Confirmed 563 of 656 bases (85.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4570_length_656_cov_4.308411:1-656 [pilon] Processing NODE_10566_length_303_cov_6.824176:1-303 [pilon] NODE_14539_length_243_cov_9.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14539_length_243_cov_9.975410:1-243 [pilon] Processing NODE_4406_length_671_cov_2.669091:1-671 [pilon] NODE_9963_length_327_cov_19.834951:1-327 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 69, Coverage: 4, minDepth: 5 [pilon] Confirmed 148 of 327 bases (45.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9963_length_327_cov_19.834951:1-327 [pilon] Processing NODE_11891_length_249_cov_23.132812:1-249 [pilon] NODE_1393_length_1299_cov_1.904924:1-1299 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 69, Coverage: 7, minDepth: 5 [pilon] Confirmed 746 of 1299 bases (57.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1393_length_1299_cov_1.904924:1-1299 [pilon] Processing NODE_2990_length_874_cov_26.405046:1-874 [pilon] NODE_4019_length_714_cov_0.925801:1-714 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 22, Coverage: 3, minDepth: 5 [pilon] Confirmed 249 of 714 bases (34.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4019_length_714_cov_0.925801:1-714 [pilon] Processing NODE_3_length_8724_cov_25.126119:1-8724 [pilon] NODE_1317_length_1333_cov_2.816832:1-1333 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 83, Coverage: 8, minDepth: 5 [pilon] Confirmed 920 of 1333 bases (69.02%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1317_length_1333_cov_2.816832:1-1333 [pilon] Processing NODE_6840_length_481_cov_6.586111:1-481 [pilon] NODE_6872_length_479_cov_29.153631:1-479 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 277, Coverage: 52, minDepth: 13 [pilon] Confirmed 408 of 479 bases (85.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6872_length_479_cov_29.153631:1-479 [pilon] Processing NODE_9782_length_335_cov_23.182243:1-335 [pilon] NODE_9722_length_337_cov_7.361111:1-337 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 167 of 337 bases (49.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9722_length_337_cov_7.361111:1-337 [pilon] Processing NODE_11726_length_255_cov_24.365672:1-255 [pilon] NODE_3642_length_762_cov_66.355694:1-762 log: [pilon] frags shovill.bam: coverage 135 [pilon] Total Reads: 982, Coverage: 135, minDepth: 34 [pilon] Confirmed 675 of 762 bases (88.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3642_length_762_cov_66.355694:1-762 [pilon] Processing NODE_4250_length_688_cov_1.585538:1-688 [pilon] NODE_13792_length_243_cov_15.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13792_length_243_cov_15.762295:1-243 [pilon] Processing NODE_10384_length_309_cov_20.340426:1-309 [pilon] NODE_8085_length_414_cov_15.894198:1-414 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 115, Coverage: 6, minDepth: 5 [pilon] Confirmed 206 of 414 bases (49.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8085_length_414_cov_15.894198:1-414 [pilon] Processing NODE_7375_length_450_cov_1.872340:1-450 [pilon] NODE_10426_length_307_cov_24.865591:1-307 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 101, Coverage: 10, minDepth: 5 [pilon] Confirmed 205 of 307 bases (66.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10426_length_307_cov_24.865591:1-307 [pilon] Processing NODE_12461_length_243_cov_29.704918:1-243 [pilon] NODE_5_length_7330_cov_21.827160:1-7330 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 3533, Coverage: 62, minDepth: 16 [pilon] Confirmed 6894 of 7330 bases (94.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5_length_7330_cov_21.827160:1-7330 [pilon] Processing NODE_474_length_1943_cov_7.843578:1-1943 [pilon] NODE_9648_length_339_cov_25.623853:1-339 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 111, Coverage: 9, minDepth: 5 [pilon] Confirmed 232 of 339 bases (68.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9648_length_339_cov_25.623853:1-339 [pilon] Processing NODE_2641_length_939_cov_45.072127:1-939 [pilon] NODE_12795_length_243_cov_25.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12795_length_243_cov_25.057377:1-243 [pilon] NODE_12154_length_243_cov_39.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12154_length_243_cov_39.106557:1-243 [pilon] Processing NODE_1024_length_1483_cov_23.698972:1-1483 [pilon] Processing NODE_9678_length_339_cov_12.366972:1-339 [pilon] NODE_13856_length_243_cov_15.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13856_length_243_cov_15.262295:1-243 [pilon] Processing NODE_12367_length_243_cov_31.745902:1-243 [pilon] NODE_1695_length_1182_cov_15.573044:1-1182 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 438, Coverage: 34, minDepth: 9 [pilon] Confirmed 635 of 1182 bases (53.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1695_length_1182_cov_15.573044:1-1182 [pilon] Processing NODE_14175_length_243_cov_12.860656:1-243 [pilon] NODE_8140_length_411_cov_17.596552:1-411 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 98, Coverage: 7, minDepth: 5 [pilon] Confirmed 218 of 411 bases (53.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8140_length_411_cov_17.596552:1-411 [pilon] Processing NODE_6377_length_512_cov_3.265985:1-512 [pilon] NODE_14165_length_243_cov_12.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14165_length_243_cov_12.942623:1-243 [pilon] Processing NODE_1664_length_1195_cov_18.150838:1-1195 [pilon] NODE_7527_length_442_cov_1.040498:1-442 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 33 of 442 bases (7.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7527_length_442_cov_1.040498:1-442 [pilon] Processing NODE_8611_length_387_cov_28.823308:1-387 [pilon] NODE_4278_length_684_cov_2.113677:1-684 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 368 of 684 bases (53.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4278_length_684_cov_2.113677:1-684 [pilon] Processing NODE_14881_length_243_cov_6.901639:1-243 [pilon] NODE_10874_length_289_cov_11.964286:1-289 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 49, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 289 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10874_length_289_cov_11.964286:1-289 [pilon] Processing NODE_2828_length_905_cov_16.044643:1-905 [pilon] NODE_8416_length_398_cov_64.638989:1-398 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 424, Coverage: 69, minDepth: 17 [pilon] Confirmed 345 of 398 bases (86.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8416_length_398_cov_64.638989:1-398 [pilon] Processing NODE_749_length_1669_cov_16.492894:1-1669 [pilon] NODE_14378_length_243_cov_11.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14378_length_243_cov_11.229508:1-243 [pilon] Processing NODE_8870_length_373_cov_39.654762:1-373 [pilon] NODE_11891_length_249_cov_23.132812:1-249 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 64, Coverage: 8, minDepth: 5 [pilon] Confirmed 163 of 249 bases (65.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11891_length_249_cov_23.132812:1-249 [pilon] Processing NODE_1689_length_1186_cov_32.224413:1-1186 [pilon] NODE_12432_length_243_cov_30.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12432_length_243_cov_30.295082:1-243 [pilon] NODE_1896_length_1114_cov_22.548842:1-1114 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 587, Coverage: 43, minDepth: 11 [pilon] Confirmed 1032 of 1114 bases (92.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1896_length_1114_cov_22.548842:1-1114 [pilon] Processing NODE_9146_length_360_cov_12.037657:1-360 [pilon] Processing NODE_1647_length_1201_cov_5.894444:1-1201 [pilon] NODE_8809_length_377_cov_4.125000:1-377 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 35, Coverage: 3, minDepth: 5 [pilon] Confirmed 159 of 377 bases (42.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8809_length_377_cov_4.125000:1-377 [pilon] Processing NODE_3309_length_813_cov_18.865607:1-813 [pilon] NODE_11726_length_255_cov_24.365672:1-255 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 68, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 255 bases (50.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11726_length_255_cov_24.365672:1-255 [pilon] Processing NODE_8115_length_412_cov_29.783505:1-412 [pilon] NODE_4406_length_671_cov_2.669091:1-671 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 39, Coverage: 7, minDepth: 5 [pilon] Confirmed 368 of 671 bases (54.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4406_length_671_cov_2.669091:1-671 [pilon] Processing NODE_14924_length_243_cov_6.467213:1-243 [pilon] NODE_8378_length_401_cov_30.885714:1-401 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 187, Coverage: 24, minDepth: 6 [pilon] Confirmed 285 of 401 bases (71.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8378_length_401_cov_30.885714:1-401 [pilon] Processing NODE_5408_length_583_cov_14.577922:1-583 [pilon] NODE_10566_length_303_cov_6.824176:1-303 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 30, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 303 bases (42.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10566_length_303_cov_6.824176:1-303 [pilon] Processing NODE_14445_length_243_cov_10.713115:1-243 [pilon] NODE_2990_length_874_cov_26.405046:1-874 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 491, Coverage: 36, minDepth: 9 [pilon] Confirmed 640 of 874 bases (73.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2990_length_874_cov_26.405046:1-874 [pilon] Processing NODE_3895_length_729_cov_1.562500:1-729 [pilon] NODE_4250_length_688_cov_1.585538:1-688 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 32, Coverage: 5, minDepth: 5 [pilon] Confirmed 328 of 688 bases (47.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4250_length_688_cov_1.585538:1-688 [pilon] Processing NODE_9142_length_360_cov_13.924686:1-360 [pilon] NODE_10384_length_309_cov_20.340426:1-309 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 93, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 309 bases (42.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10384_length_309_cov_20.340426:1-309 [pilon] Processing NODE_12758_length_243_cov_25.459016:1-243 [pilon] NODE_6840_length_481_cov_6.586111:1-481 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 81, Coverage: 6, minDepth: 5 [pilon] Confirmed 318 of 481 bases (66.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6840_length_481_cov_6.586111:1-481 [pilon] Processing NODE_12146_length_243_cov_39.459016:1-243 [pilon] NODE_9782_length_335_cov_23.182243:1-335 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 106, Coverage: 4, minDepth: 5 [pilon] Confirmed 133 of 335 bases (39.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9782_length_335_cov_23.182243:1-335 [pilon] Processing NODE_4867_length_629_cov_22.622047:1-629 [pilon] NODE_7375_length_450_cov_1.872340:1-450 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 231 of 450 bases (51.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7375_length_450_cov_1.872340:1-450 [pilon] Processing NODE_13928_length_243_cov_14.704918:1-243 [pilon] NODE_12461_length_243_cov_29.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12461_length_243_cov_29.704918:1-243 [pilon] Processing NODE_14976_length_243_cov_5.745902:1-243 [pilon] NODE_474_length_1943_cov_7.843578:1-1943 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 395, Coverage: 19, minDepth: 5 [pilon] Confirmed 1789 of 1943 bases (92.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_474_length_1943_cov_7.843578:1-1943 [pilon] Processing NODE_3526_length_780_cov_2.122914:1-780 [pilon] NODE_6377_length_512_cov_3.265985:1-512 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 36, Coverage: 9, minDepth: 5 [pilon] Confirmed 302 of 512 bases (58.98%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6377_length_512_cov_3.265985:1-512 [pilon] Processing NODE_9299_length_354_cov_15.793991:1-354 [pilon] NODE_1664_length_1195_cov_18.150838:1-1195 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 326, Coverage: 20, minDepth: 5 [pilon] Confirmed 900 of 1195 bases (75.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1664_length_1195_cov_18.150838:1-1195 [pilon] Processing NODE_12124_length_243_cov_42.967213:1-243 [pilon] NODE_2641_length_939_cov_45.072127:1-939 log: [pilon] frags shovill.bam: coverage 94 [pilon] Total Reads: 816, Coverage: 94, minDepth: 24 [pilon] Confirmed 795 of 939 bases (84.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2641_length_939_cov_45.072127:1-939 [pilon] Processing NODE_5017_length_617_cov_17.334677:1-617 [pilon] NODE_12367_length_243_cov_31.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12367_length_243_cov_31.745902:1-243 [pilon] Processing NODE_9897_length_330_cov_17.889952:1-330 [pilon] NODE_8115_length_412_cov_29.783505:1-412 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 195, Coverage: 22, minDepth: 6 [pilon] Confirmed 322 of 412 bases (78.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8115_length_412_cov_29.783505:1-412 [pilon] Processing NODE_13491_length_243_cov_18.426230:1-243 [pilon] NODE_9678_length_339_cov_12.366972:1-339 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 64, Coverage: 7, minDepth: 5 [pilon] Confirmed 248 of 339 bases (73.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9678_length_339_cov_12.366972:1-339 [pilon] Processing NODE_10281_length_314_cov_22.854922:1-314 [pilon] NODE_9146_length_360_cov_12.037657:1-360 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 55, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 360 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9146_length_360_cov_12.037657:1-360 [pilon] Processing NODE_7891_length_423_cov_17.966887:1-423 [pilon] NODE_1024_length_1483_cov_23.698972:1-1483 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 805, Coverage: 48, minDepth: 12 [pilon] Confirmed 1151 of 1483 bases (77.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1024_length_1483_cov_23.698972:1-1483 [pilon] Processing NODE_12302_length_243_cov_33.131148:1-243 [pilon] NODE_14175_length_243_cov_12.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14175_length_243_cov_12.860656:1-243 [pilon] Processing NODE_3092_length_854_cov_24.631651:1-854 [pilon] NODE_3_length_8724_cov_25.126119:1-8724 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 4949, Coverage: 71, minDepth: 18 [pilon] Confirmed 8044 of 8724 bases (92.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3_length_8724_cov_25.126119:1-8724 [pilon] Processing NODE_4468_length_664_cov_19.867403:1-664 [pilon] NODE_14881_length_243_cov_6.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14881_length_243_cov_6.901639:1-243 [pilon] Processing NODE_10106_length_321_cov_17.450000:1-321 [pilon] NODE_8611_length_387_cov_28.823308:1-387 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 183, Coverage: 9, minDepth: 5 [pilon] Confirmed 165 of 387 bases (42.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8611_length_387_cov_28.823308:1-387 [pilon] Processing NODE_15065_length_238_cov_14.094017:1-238 [pilon] NODE_1689_length_1186_cov_32.224413:1-1186 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 868, Coverage: 49, minDepth: 12 [pilon] Confirmed 1031 of 1186 bases (86.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1689_length_1186_cov_32.224413:1-1186 [pilon] Processing NODE_9008_length_366_cov_14.689796:1-366 [pilon] NODE_8870_length_373_cov_39.654762:1-373 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 242, Coverage: 4, minDepth: 5 [pilon] Confirmed 138 of 373 bases (37.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8870_length_373_cov_39.654762:1-373 [pilon] Processing NODE_7492_length_443_cov_47.987578:1-443 [pilon] NODE_14445_length_243_cov_10.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14445_length_243_cov_10.713115:1-243 [pilon] Processing NODE_7440_length_446_cov_28.332308:1-446 [pilon] NODE_2828_length_905_cov_16.044643:1-905 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 314, Coverage: 31, minDepth: 8 [pilon] Confirmed 852 of 905 bases (94.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2828_length_905_cov_16.044643:1-905 [pilon] Processing NODE_1771_length_1155_cov_23.086074:1-1155 [pilon] NODE_749_length_1669_cov_16.492894:1-1669 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 607, Coverage: 38, minDepth: 10 [pilon] Confirmed 1176 of 1669 bases (70.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_749_length_1669_cov_16.492894:1-1669 [pilon] Processing NODE_13929_length_243_cov_14.672131:1-243 [pilon] NODE_3309_length_813_cov_18.865607:1-813 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 311, Coverage: 36, minDepth: 9 [pilon] Confirmed 634 of 813 bases (77.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3309_length_813_cov_18.865607:1-813 [pilon] Processing NODE_8778_length_378_cov_18.766537:1-378 [pilon] NODE_5408_length_583_cov_14.577922:1-583 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 143, Coverage: 27, minDepth: 7 [pilon] Confirmed 390 of 583 bases (66.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5408_length_583_cov_14.577922:1-583 [pilon] Processing NODE_1085_length_1450_cov_2.560572:1-1450 [pilon] NODE_14924_length_243_cov_6.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14924_length_243_cov_6.467213:1-243 [pilon] Processing NODE_6431_length_508_cov_3.472868:1-508 [pilon] NODE_1647_length_1201_cov_5.894444:1-1201 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 193, Coverage: 16, minDepth: 5 [pilon] Confirmed 893 of 1201 bases (74.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1647_length_1201_cov_5.894444:1-1201 [pilon] Processing NODE_1334_length_1327_cov_24.187396:1-1327 [pilon] NODE_9142_length_360_cov_13.924686:1-360 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 67, Coverage: 2, minDepth: 5 [pilon] Confirmed 114 of 360 bases (31.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9142_length_360_cov_13.924686:1-360 [pilon] Processing NODE_7521_length_442_cov_8.909657:1-442 [pilon] NODE_3895_length_729_cov_1.562500:1-729 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 409 of 729 bases (56.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3895_length_729_cov_1.562500:1-729 [pilon] Processing NODE_2164_length_1042_cov_13.147666:1-1042 [pilon] NODE_4867_length_629_cov_22.622047:1-629 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 270, Coverage: 29, minDepth: 7 [pilon] Confirmed 526 of 629 bases (83.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4867_length_629_cov_22.622047:1-629 [pilon] Processing NODE_10765_length_294_cov_34.213873:1-294 [pilon] NODE_12758_length_243_cov_25.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12758_length_243_cov_25.459016:1-243 [pilon] NODE_12146_length_243_cov_39.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12146_length_243_cov_39.459016:1-243 [pilon] Processing NODE_13153_length_243_cov_21.491803:1-243 [pilon] Processing NODE_13071_length_243_cov_22.229508:1-243 [pilon] NODE_14976_length_243_cov_5.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14976_length_243_cov_5.745902:1-243 [pilon] Processing NODE_3478_length_788_cov_4.103448:1-788 [pilon] NODE_13928_length_243_cov_14.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13928_length_243_cov_14.704918:1-243 [pilon] Processing NODE_10963_length_285_cov_20.871951:1-285 [pilon] NODE_3526_length_780_cov_2.122914:1-780 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 45, Coverage: 7, minDepth: 5 [pilon] Confirmed 496 of 780 bases (63.59%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3526_length_780_cov_2.122914:1-780 [pilon] Processing NODE_463_length_1959_cov_2.647987:1-1959 [pilon] NODE_9299_length_354_cov_15.793991:1-354 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 53, Coverage: 4, minDepth: 5 [pilon] Confirmed 131 of 354 bases (37.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9299_length_354_cov_15.793991:1-354 [pilon] Processing NODE_12278_length_243_cov_33.696721:1-243 [pilon] NODE_15065_length_238_cov_14.094017:1-238 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 35, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 238 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15065_length_238_cov_14.094017:1-238 [pilon] Processing NODE_9307_length_354_cov_14.150215:1-354 [pilon] NODE_7891_length_423_cov_17.966887:1-423 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 129, Coverage: 19, minDepth: 5 [pilon] Confirmed 310 of 423 bases (73.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7891_length_423_cov_17.966887:1-423 [pilon] Processing NODE_5282_length_594_cov_7.530655:1-594 [pilon] NODE_9897_length_330_cov_17.889952:1-330 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 82, Coverage: 9, minDepth: 5 [pilon] Confirmed 200 of 330 bases (60.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9897_length_330_cov_17.889952:1-330 [pilon] Processing NODE_732_length_1680_cov_2.756895:1-1680 [pilon] NODE_13491_length_243_cov_18.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13491_length_243_cov_18.426230:1-243 [pilon] Processing NODE_2003_length_1086_cov_11.506736:1-1086 [pilon] NODE_12124_length_243_cov_42.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 111, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12124_length_243_cov_42.967213:1-243 [pilon] Processing NODE_7426_length_447_cov_2.631902:1-447 [pilon] NODE_5017_length_617_cov_17.334677:1-617 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 210, Coverage: 13, minDepth: 5 [pilon] Confirmed 345 of 617 bases (55.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5017_length_617_cov_17.334677:1-617 [pilon] Processing NODE_4386_length_673_cov_1.041667:1-673 [pilon] NODE_10281_length_314_cov_22.854922:1-314 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 93, Coverage: 10, minDepth: 5 [pilon] Confirmed 230 of 314 bases (73.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10281_length_314_cov_22.854922:1-314 [pilon] Processing NODE_80_length_3176_cov_31.522422:1-3176 [pilon] NODE_3092_length_854_cov_24.631651:1-854 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 414, Coverage: 39, minDepth: 10 [pilon] Confirmed 516 of 854 bases (60.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3092_length_854_cov_24.631651:1-854 [pilon] Processing NODE_7395_length_448_cov_52.134557:1-448 [pilon] NODE_8778_length_378_cov_18.766537:1-378 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 104, Coverage: 13, minDepth: 5 [pilon] Confirmed 285 of 378 bases (75.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8778_length_378_cov_18.766537:1-378 [pilon] Processing NODE_10458_length_306_cov_16.059459:1-306 [pilon] NODE_9008_length_366_cov_14.689796:1-366 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 93, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 366 bases (35.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9008_length_366_cov_14.689796:1-366 [pilon] Processing NODE_10538_length_303_cov_19.384615:1-303 [pilon] NODE_12302_length_243_cov_33.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 84, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12302_length_243_cov_33.131148:1-243 [pilon] Processing NODE_14898_length_243_cov_6.721311:1-243 [pilon] NODE_10106_length_321_cov_17.450000:1-321 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 210 of 321 bases (65.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10106_length_321_cov_17.450000:1-321 [pilon] Processing NODE_292_length_2254_cov_2.046414:1-2254 [pilon] NODE_13929_length_243_cov_14.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13929_length_243_cov_14.672131:1-243 [pilon] Processing NODE_5704_length_563_cov_17.626697:1-563 [pilon] NODE_7492_length_443_cov_47.987578:1-443 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 341, Coverage: 62, minDepth: 16 [pilon] Confirmed 383 of 443 bases (86.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7492_length_443_cov_47.987578:1-443 [pilon] Processing NODE_6928_length_476_cov_1.828169:1-476 [pilon] NODE_4468_length_664_cov_19.867403:1-664 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 290, Coverage: 27, minDepth: 7 [pilon] Confirmed 617 of 664 bases (92.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4468_length_664_cov_19.867403:1-664 [pilon] Processing NODE_7173_length_461_cov_10.955882:1-461 [pilon] NODE_10765_length_294_cov_34.213873:1-294 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 121, Coverage: 6, minDepth: 5 [pilon] Confirmed 174 of 294 bases (59.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10765_length_294_cov_34.213873:1-294 [pilon] Processing NODE_4208_length_693_cov_22.055944:1-693 [pilon] NODE_6431_length_508_cov_3.472868:1-508 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 33, Coverage: 8, minDepth: 5 [pilon] Confirmed 342 of 508 bases (67.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6431_length_508_cov_3.472868:1-508 [pilon] Processing NODE_1702_length_1179_cov_11.690926:1-1179 [pilon] NODE_1771_length_1155_cov_23.086074:1-1155 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 575, Coverage: 38, minDepth: 10 [pilon] Confirmed 853 of 1155 bases (73.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1771_length_1155_cov_23.086074:1-1155 [pilon] Processing NODE_1278_length_1351_cov_3.163415:1-1351 [pilon] NODE_1085_length_1450_cov_2.560572:1-1450 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 104, Coverage: 9, minDepth: 5 [pilon] Confirmed 1150 of 1450 bases (79.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1085_length_1450_cov_2.560572:1-1450 [pilon] Processing NODE_4875_length_629_cov_2.035433:1-629 [pilon] NODE_7440_length_446_cov_28.332308:1-446 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 263, Coverage: 47, minDepth: 12 [pilon] Confirmed 381 of 446 bases (85.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7440_length_446_cov_28.332308:1-446 [pilon] Processing NODE_5133_length_607_cov_27.267490:1-607 [pilon] NODE_7521_length_442_cov_8.909657:1-442 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 84, Coverage: 4, minDepth: 5 [pilon] Confirmed 222 of 442 bases (50.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7521_length_442_cov_8.909657:1-442 [pilon] Processing NODE_11492_length_264_cov_11.923077:1-264 [pilon] NODE_2164_length_1042_cov_13.147666:1-1042 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 300, Coverage: 24, minDepth: 6 [pilon] Confirmed 894 of 1042 bases (85.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2164_length_1042_cov_13.147666:1-1042 [pilon] Processing NODE_4304_length_681_cov_2.792857:1-681 [pilon] NODE_1334_length_1327_cov_24.187396:1-1327 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 680, Coverage: 61, minDepth: 15 [pilon] Confirmed 1169 of 1327 bases (88.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1334_length_1327_cov_24.187396:1-1327 [pilon] Processing NODE_4631_length_649_cov_18.982955:1-649 [pilon] NODE_13071_length_243_cov_22.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13071_length_243_cov_22.229508:1-243 [pilon] Processing NODE_5369_length_587_cov_1.210300:1-587 [pilon] NODE_9307_length_354_cov_14.150215:1-354 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 66, Coverage: 7, minDepth: 5 [pilon] Confirmed 213 of 354 bases (60.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9307_length_354_cov_14.150215:1-354 [pilon] Processing NODE_3187_length_834_cov_7.263675:1-834 [pilon] NODE_13153_length_243_cov_21.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13153_length_243_cov_21.491803:1-243 [pilon] Processing NODE_2225_length_1027_cov_31.438190:1-1027 [pilon] NODE_3478_length_788_cov_4.103448:1-788 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 76, Coverage: 13, minDepth: 5 [pilon] Confirmed 640 of 788 bases (81.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3478_length_788_cov_4.103448:1-788 [pilon] Processing NODE_11535_length_262_cov_28.234043:1-262 [pilon] NODE_10458_length_306_cov_16.059459:1-306 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 70, Coverage: 6, minDepth: 5 [pilon] Confirmed 162 of 306 bases (52.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10458_length_306_cov_16.059459:1-306 [pilon] Processing NODE_4985_length_619_cov_28.584337:1-619 [pilon] NODE_463_length_1959_cov_2.647987:1-1959 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 150, Coverage: 10, minDepth: 5 [pilon] Confirmed 1436 of 1959 bases (73.30%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_463_length_1959_cov_2.647987:1-1959 [pilon] Processing NODE_14289_length_243_cov_11.926230:1-243 [pilon] NODE_12278_length_243_cov_33.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12278_length_243_cov_33.696721:1-243 [pilon] Processing NODE_3146_length_843_cov_1.080332:1-843 [pilon] NODE_10963_length_285_cov_20.871951:1-285 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 67, Coverage: 6, minDepth: 5 [pilon] Confirmed 201 of 285 bases (70.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10963_length_285_cov_20.871951:1-285 [pilon] Processing NODE_7811_length_426_cov_32.773770:1-426 [pilon] NODE_5282_length_594_cov_7.530655:1-594 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 89, Coverage: 11, minDepth: 5 [pilon] Confirmed 434 of 594 bases (73.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5282_length_594_cov_7.530655:1-594 [pilon] Processing NODE_5031_length_617_cov_0.467742:1-617 [pilon] NODE_732_length_1680_cov_2.756895:1-1680 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 127, Coverage: 10, minDepth: 5 [pilon] Confirmed 1365 of 1680 bases (81.25%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_732_length_1680_cov_2.756895:1-1680 [pilon] Processing NODE_14420_length_243_cov_10.909836:1-243 [pilon] NODE_4386_length_673_cov_1.041667:1-673 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 230 of 673 bases (34.18%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4386_length_673_cov_1.041667:1-673 [pilon] Processing NODE_9973_length_327_cov_13.228155:1-327 [pilon] NODE_10538_length_303_cov_19.384615:1-303 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 76, Coverage: 8, minDepth: 5 [pilon] Confirmed 219 of 303 bases (72.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10538_length_303_cov_19.384615:1-303 [pilon] Processing NODE_3547_length_777_cov_26.650915:1-777 [pilon] NODE_4208_length_693_cov_22.055944:1-693 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 294, Coverage: 19, minDepth: 5 [pilon] Confirmed 545 of 693 bases (78.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4208_length_693_cov_22.055944:1-693 [pilon] Processing NODE_13731_length_243_cov_16.163934:1-243 [pilon] NODE_7395_length_448_cov_52.134557:1-448 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 376, Coverage: 68, minDepth: 17 [pilon] Confirmed 388 of 448 bases (86.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7395_length_448_cov_52.134557:1-448 [pilon] Processing NODE_14155_length_243_cov_13.073770:1-243 [pilon] NODE_7426_length_447_cov_2.631902:1-447 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 208 of 447 bases (46.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7426_length_447_cov_2.631902:1-447 [pilon] Processing NODE_9411_length_350_cov_10.113537:1-350 [pilon] NODE_14898_length_243_cov_6.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14898_length_243_cov_6.721311:1-243 [pilon] Processing NODE_10608_length_300_cov_26.927374:1-300 [pilon] NODE_2003_length_1086_cov_11.506736:1-1086 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 291, Coverage: 17, minDepth: 5 [pilon] Confirmed 464 of 1086 bases (42.73%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2003_length_1086_cov_11.506736:1-1086 [pilon] Processing NODE_15132_length_201_cov_8.362500:1-201 [pilon] NODE_5704_length_563_cov_17.626697:1-563 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 169, Coverage: 17, minDepth: 5 [pilon] Confirmed 379 of 563 bases (67.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5704_length_563_cov_17.626697:1-563 [pilon] Processing NODE_6562_length_499_cov_12.224868:1-499 [pilon] NODE_6928_length_476_cov_1.828169:1-476 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 207 of 476 bases (43.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6928_length_476_cov_1.828169:1-476 [pilon] Processing NODE_11668_length_258_cov_9.554745:1-258 [pilon] NODE_292_length_2254_cov_2.046414:1-2254 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 125, Coverage: 7, minDepth: 5 [pilon] Confirmed 1327 of 2254 bases (58.87%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_292_length_2254_cov_2.046414:1-2254 [pilon] Processing NODE_12504_length_243_cov_29.032787:1-243 [pilon] NODE_7173_length_461_cov_10.955882:1-461 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 110, Coverage: 6, minDepth: 5 [pilon] Confirmed 253 of 461 bases (54.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7173_length_461_cov_10.955882:1-461 [pilon] Processing NODE_1965_length_1095_cov_1.329569:1-1095 [pilon] NODE_5133_length_607_cov_27.267490:1-607 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 326, Coverage: 44, minDepth: 11 [pilon] Confirmed 546 of 607 bases (89.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5133_length_607_cov_27.267490:1-607 [pilon] Processing NODE_10967_length_285_cov_20.128049:1-285 [pilon] NODE_80_length_3176_cov_31.522422:1-3176 log: [pilon] frags shovill.bam: coverage 82 [pilon] Total Reads: 2271, Coverage: 82, minDepth: 21 [pilon] Confirmed 2703 of 3176 bases (85.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_80_length_3176_cov_31.522422:1-3176 [pilon] Processing NODE_11150_length_278_cov_7.299363:1-278 [pilon] NODE_4875_length_629_cov_2.035433:1-629 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 354 of 629 bases (56.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4875_length_629_cov_2.035433:1-629 [pilon] Processing NODE_11877_length_249_cov_45.062500:1-249 [pilon] NODE_3187_length_834_cov_7.263675:1-834 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 118, Coverage: 15, minDepth: 5 [pilon] Confirmed 572 of 834 bases (68.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3187_length_834_cov_7.263675:1-834 [pilon] Processing NODE_11216_length_276_cov_5.225806:1-276 [pilon] NODE_1278_length_1351_cov_3.163415:1-1351 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 93, Coverage: 8, minDepth: 5 [pilon] Confirmed 842 of 1351 bases (62.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1278_length_1351_cov_3.163415:1-1351 [pilon] Processing NODE_15254_length_125_cov_30.750000:1-125 [pilon] NODE_1702_length_1179_cov_11.690926:1-1179 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 418, Coverage: 40, minDepth: 10 [pilon] Confirmed 931 of 1179 bases (78.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1702_length_1179_cov_11.690926:1-1179 [pilon] Processing NODE_1888_length_1116_cov_28.358794:1-1116 [pilon] NODE_11492_length_264_cov_11.923077:1-264 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 36, Coverage: 4, minDepth: 5 [pilon] Confirmed 108 of 264 bases (40.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11492_length_264_cov_11.923077:1-264 [pilon] Processing NODE_1148_length_1418_cov_20.717810:1-1418 [pilon] NODE_4985_length_619_cov_28.584337:1-619 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 324, Coverage: 53, minDepth: 13 [pilon] Confirmed 510 of 619 bases (82.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4985_length_619_cov_28.584337:1-619 [pilon] Processing NODE_5776_length_557_cov_16.245413:1-557 [pilon] NODE_4304_length_681_cov_2.792857:1-681 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 415 of 681 bases (60.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4304_length_681_cov_2.792857:1-681 [pilon] Processing NODE_15123_length_207_cov_26.965116:1-207 [pilon] NODE_4631_length_649_cov_18.982955:1-649 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 224, Coverage: 32, minDepth: 8 [pilon] Confirmed 539 of 649 bases (83.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4631_length_649_cov_18.982955:1-649 [pilon] Processing NODE_1821_length_1138_cov_39.862340:1-1138 [pilon] NODE_5369_length_587_cov_1.210300:1-587 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 228 of 587 bases (38.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5369_length_587_cov_1.210300:1-587 [pilon] Processing NODE_5348_length_588_cov_21.672377:1-588 [pilon] NODE_11535_length_262_cov_28.234043:1-262 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 86, Coverage: 8, minDepth: 5 [pilon] Confirmed 178 of 262 bases (67.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11535_length_262_cov_28.234043:1-262 [pilon] Processing NODE_9166_length_359_cov_11.537815:1-359 [pilon] NODE_14289_length_243_cov_11.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14289_length_243_cov_11.926230:1-243 [pilon] Processing NODE_7392_length_449_cov_0.786585:1-449 [pilon] NODE_10608_length_300_cov_26.927374:1-300 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 108, Coverage: 9, minDepth: 5 [pilon] Confirmed 184 of 300 bases (61.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10608_length_300_cov_26.927374:1-300 [pilon] Processing NODE_4347_length_676_cov_17.198198:1-676 [pilon] NODE_2225_length_1027_cov_31.438190:1-1027 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 628, Coverage: 64, minDepth: 16 [pilon] Confirmed 862 of 1027 bases (83.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2225_length_1027_cov_31.438190:1-1027 [pilon] Processing NODE_8285_length_405_cov_14.000000:1-405 [pilon] NODE_5031_length_617_cov_0.467742:1-617 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 617 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5031_length_617_cov_0.467742:1-617 [pilon] Processing NODE_4999_length_618_cov_26.855131:1-618 [pilon] NODE_7811_length_426_cov_32.773770:1-426 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 248, Coverage: 16, minDepth: 5 [pilon] Confirmed 271 of 426 bases (63.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7811_length_426_cov_32.773770:1-426 [pilon] Processing NODE_7531_length_441_cov_48.809375:1-441 [pilon] NODE_3146_length_843_cov_1.080332:1-843 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 31, Coverage: 4, minDepth: 5 [pilon] Confirmed 297 of 843 bases (35.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3146_length_843_cov_1.080332:1-843 [pilon] Processing NODE_9704_length_338_cov_17.562212:1-338 [pilon] NODE_13731_length_243_cov_16.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13731_length_243_cov_16.163934:1-243 [pilon] Processing NODE_12143_length_243_cov_40.163934:1-243 [pilon] NODE_14420_length_243_cov_10.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14420_length_243_cov_10.909836:1-243 [pilon] Processing NODE_14902_length_243_cov_6.704918:1-243 [pilon] NODE_9973_length_327_cov_13.228155:1-327 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 71, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 327 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9973_length_327_cov_13.228155:1-327 [pilon] Processing NODE_9139_length_360_cov_14.866109:1-360 [pilon] NODE_14155_length_243_cov_13.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14155_length_243_cov_13.073770:1-243 [pilon] Processing NODE_964_length_1516_cov_28.189247:1-1516 [pilon] NODE_11216_length_276_cov_5.225806:1-276 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 20, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11216_length_276_cov_5.225806:1-276 [pilon] Processing NODE_653_length_1743_cov_11.672010:1-1743 [pilon] NODE_9411_length_350_cov_10.113537:1-350 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 45, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 350 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9411_length_350_cov_10.113537:1-350 [pilon] Processing NODE_12960_length_243_cov_23.360656:1-243 [pilon] NODE_3547_length_777_cov_26.650915:1-777 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 408, Coverage: 45, minDepth: 11 [pilon] Confirmed 672 of 777 bases (86.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3547_length_777_cov_26.650915:1-777 [pilon] Processing NODE_5362_length_587_cov_19.190987:1-587 [pilon] NODE_15132_length_201_cov_8.362500:1-201 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 201 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15132_length_201_cov_8.362500:1-201 [pilon] Processing NODE_2969_length_879_cov_37.964380:1-879 [pilon] NODE_6562_length_499_cov_12.224868:1-499 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 124, Coverage: 10, minDepth: 5 [pilon] Confirmed 351 of 499 bases (70.34%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6562_length_499_cov_12.224868:1-499 [pilon] Processing NODE_13724_length_243_cov_16.221311:1-243 [pilon] NODE_11668_length_258_cov_9.554745:1-258 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 22, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11668_length_258_cov_9.554745:1-258 [pilon] Processing NODE_432_length_1994_cov_2.075280:1-1994 [pilon] NODE_5776_length_557_cov_16.245413:1-557 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 175, Coverage: 28, minDepth: 7 [pilon] Confirmed 433 of 557 bases (77.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5776_length_557_cov_16.245413:1-557 [pilon] Processing NODE_14614_length_243_cov_9.295082:1-243 [pilon] NODE_11150_length_278_cov_7.299363:1-278 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 278 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11150_length_278_cov_7.299363:1-278 [pilon] Processing NODE_10372_length_309_cov_35.436170:1-309 [pilon] NODE_12504_length_243_cov_29.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12504_length_243_cov_29.032787:1-243 [pilon] Processing NODE_1676_length_1190_cov_31.080449:1-1190 [pilon] NODE_1965_length_1095_cov_1.329569:1-1095 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 37, Coverage: 4, minDepth: 5 [pilon] Confirmed 355 of 1095 bases (32.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1965_length_1095_cov_1.329569:1-1095 [pilon] Processing NODE_13844_length_243_cov_15.336066:1-243 [pilon] NODE_15254_length_125_cov_30.750000:1-125 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 125 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15254_length_125_cov_30.750000:1-125 [pilon] Processing NODE_13080_length_243_cov_22.131148:1-243 [pilon] NODE_11877_length_249_cov_45.062500:1-249 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 130, Coverage: 6, minDepth: 5 [pilon] Confirmed 145 of 249 bases (58.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11877_length_249_cov_45.062500:1-249 [pilon] Processing NODE_14182_length_243_cov_12.770492:1-243 [pilon] NODE_10967_length_285_cov_20.128049:1-285 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 66, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 285 bases (45.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10967_length_285_cov_20.128049:1-285 [pilon] Processing NODE_10289_length_314_cov_13.538860:1-314 [pilon] NODE_1888_length_1116_cov_28.358794:1-1116 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 641, Coverage: 52, minDepth: 13 [pilon] Confirmed 1075 of 1116 bases (96.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1888_length_1116_cov_28.358794:1-1116 [pilon] Processing NODE_6409_length_510_cov_4.838046:1-510 [pilon] NODE_4347_length_676_cov_17.198198:1-676 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 242, Coverage: 20, minDepth: 5 [pilon] Confirmed 437 of 676 bases (64.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4347_length_676_cov_17.198198:1-676 [pilon] Processing NODE_309_length_2227_cov_13.584520:1-2227 [pilon] NODE_1148_length_1418_cov_20.717810:1-1418 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 659, Coverage: 54, minDepth: 14 [pilon] Confirmed 1170 of 1418 bases (82.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1148_length_1418_cov_20.717810:1-1418 [pilon] Processing NODE_8051_length_415_cov_51.397959:1-415 [pilon] NODE_15123_length_207_cov_26.965116:1-207 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 207 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15123_length_207_cov_26.965116:1-207 [pilon] Processing NODE_2778_length_913_cov_6.779040:1-913 [pilon] NODE_1821_length_1138_cov_39.862340:1-1138 log: [pilon] frags shovill.bam: coverage 100 [pilon] Total Reads: 977, Coverage: 100, minDepth: 25 [pilon] Confirmed 1013 of 1138 bases (89.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1821_length_1138_cov_39.862340:1-1138 [pilon] Processing NODE_4719_length_642_cov_1.289827:1-642 [pilon] NODE_5348_length_588_cov_21.672377:1-588 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 239, Coverage: 28, minDepth: 7 [pilon] Confirmed 381 of 588 bases (64.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5348_length_588_cov_21.672377:1-588 [pilon] Processing NODE_4493_length_662_cov_20.789279:1-662 [pilon] NODE_9166_length_359_cov_11.537815:1-359 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 68, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 359 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9166_length_359_cov_11.537815:1-359 [pilon] Processing NODE_105_length_2965_cov_24.296062:1-2965 [pilon] NODE_653_length_1743_cov_11.672010:1-1743 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 552, Coverage: 35, minDepth: 9 [pilon] Confirmed 1076 of 1743 bases (61.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_653_length_1743_cov_11.672010:1-1743 [pilon] Processing NODE_9250_length_356_cov_9.812766:1-356 [pilon] NODE_7392_length_449_cov_0.786585:1-449 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 5, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 449 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7392_length_449_cov_0.786585:1-449 [pilon] Processing NODE_1719_length_1174_cov_17.713200:1-1174 [pilon] NODE_8285_length_405_cov_14.000000:1-405 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 98, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 405 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8285_length_405_cov_14.000000:1-405 [pilon] Processing NODE_6548_length_500_cov_34.197889:1-500 [pilon] NODE_9704_length_338_cov_17.562212:1-338 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 82, Coverage: 19, minDepth: 5 [pilon] Confirmed 296 of 338 bases (87.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9704_length_338_cov_17.562212:1-338 [pilon] Processing NODE_12005_length_246_cov_17.360000:1-246 [pilon] NODE_4999_length_618_cov_26.855131:1-618 log: [pilon] NODE_14614_length_243_cov_9.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 336, Coverage: 58, minDepth: 15 [pilon] Confirmed 477 of 618 bases (77.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14614_length_243_cov_9.295082:1-243 [pilon] Processing NODE_11198_length_276_cov_13.135484:1-276 [pilon] Finished processing NODE_4999_length_618_cov_26.855131:1-618 [pilon] Processing NODE_8111_length_413_cov_2.034247:1-413 [pilon] NODE_7531_length_441_cov_48.809375:1-441 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 355, Coverage: 70, minDepth: 18 [pilon] Confirmed 377 of 441 bases (85.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7531_length_441_cov_48.809375:1-441 [pilon] Processing NODE_340_length_2137_cov_35.948909:1-2137 [pilon] NODE_12143_length_243_cov_40.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 105, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12143_length_243_cov_40.163934:1-243 [pilon] Processing NODE_14875_length_243_cov_6.934426:1-243 [pilon] NODE_12960_length_243_cov_23.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12960_length_243_cov_23.360656:1-243 [pilon] Processing NODE_11421_length_267_cov_10.965753:1-267 [pilon] NODE_14902_length_243_cov_6.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14902_length_243_cov_6.704918:1-243 [pilon] Processing NODE_7717_length_432_cov_2.151125:1-432 [pilon] NODE_9139_length_360_cov_14.866109:1-360 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 57, Coverage: 8, minDepth: 5 [pilon] Confirmed 212 of 360 bases (58.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9139_length_360_cov_14.866109:1-360 [pilon] Processing NODE_13264_length_243_cov_20.467213:1-243 [pilon] NODE_5362_length_587_cov_19.190987:1-587 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 250, Coverage: 14, minDepth: 5 [pilon] Confirmed 546 of 587 bases (93.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5362_length_587_cov_19.190987:1-587 [pilon] Processing NODE_14239_length_243_cov_12.319672:1-243 [pilon] NODE_2969_length_879_cov_37.964380:1-879 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 784, Coverage: 55, minDepth: 14 [pilon] Confirmed 622 of 879 bases (70.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2969_length_879_cov_37.964380:1-879 [pilon] Processing NODE_8980_length_367_cov_28.577236:1-367 [pilon] NODE_964_length_1516_cov_28.189247:1-1516 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 965, Coverage: 56, minDepth: 14 [pilon] Confirmed 1237 of 1516 bases (81.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_964_length_1516_cov_28.189247:1-1516 [pilon] Processing NODE_2953_length_881_cov_16.998684:1-881 [pilon] NODE_13724_length_243_cov_16.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13724_length_243_cov_16.221311:1-243 [pilon] Processing NODE_9189_length_357_cov_32.436441:1-357 [pilon] NODE_309_length_2227_cov_13.584520:1-2227 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 728, Coverage: 35, minDepth: 9 [pilon] Confirmed 1925 of 2227 bases (86.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_309_length_2227_cov_13.584520:1-2227 [pilon] Processing NODE_14697_length_243_cov_8.598361:1-243 [pilon] NODE_432_length_1994_cov_2.075280:1-1994 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 115, Coverage: 7, minDepth: 5 [pilon] Confirmed 1439 of 1994 bases (72.17%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_432_length_1994_cov_2.075280:1-1994 [pilon] Processing NODE_8141_length_411_cov_17.331034:1-411 [pilon] NODE_1676_length_1190_cov_31.080449:1-1190 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 814, Coverage: 72, minDepth: 18 [pilon] Confirmed 1034 of 1190 bases (86.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1676_length_1190_cov_31.080449:1-1190 [pilon] Processing NODE_5806_length_555_cov_1.534562:1-555 [pilon] NODE_10372_length_309_cov_35.436170:1-309 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 124, Coverage: 15, minDepth: 5 [pilon] Confirmed 238 of 309 bases (77.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10372_length_309_cov_35.436170:1-309 [pilon] Processing NODE_8013_length_417_cov_34.405405:1-417 [pilon] NODE_13080_length_243_cov_22.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13080_length_243_cov_22.131148:1-243 [pilon] Processing NODE_646_length_1752_cov_18.807480:1-1752 [pilon] NODE_13844_length_243_cov_15.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13844_length_243_cov_15.336066:1-243 [pilon] Processing NODE_14122_length_243_cov_13.319672:1-243 [pilon] NODE_14182_length_243_cov_12.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14182_length_243_cov_12.770492:1-243 [pilon] Processing NODE_13914_length_243_cov_14.795082:1-243 [pilon] NODE_6409_length_510_cov_4.838046:1-510 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 46, Coverage: 11, minDepth: 5 [pilon] Confirmed 402 of 510 bases (78.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6409_length_510_cov_4.838046:1-510 [pilon] Processing NODE_11552_length_261_cov_46.521429:1-261 [pilon] NODE_10289_length_314_cov_13.538860:1-314 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 73, Coverage: 5, minDepth: 5 [pilon] Confirmed 219 of 314 bases (69.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10289_length_314_cov_13.538860:1-314 [pilon] Processing NODE_8530_length_392_cov_35.509225:1-392 [pilon] NODE_2778_length_913_cov_6.779040:1-913 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 181, Coverage: 24, minDepth: 6 [pilon] Confirmed 719 of 913 bases (78.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2778_length_913_cov_6.779040:1-913 [pilon] Processing NODE_2859_length_900_cov_17.743261:1-900 [pilon] NODE_8051_length_415_cov_51.397959:1-415 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 335, Coverage: 63, minDepth: 16 [pilon] Confirmed 360 of 415 bases (86.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8051_length_415_cov_51.397959:1-415 [pilon] Processing NODE_9141_length_360_cov_14.046025:1-360 [pilon] NODE_8111_length_413_cov_2.034247:1-413 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 29, Coverage: 6, minDepth: 5 [pilon] Confirmed 278 of 413 bases (67.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8111_length_413_cov_2.034247:1-413 [pilon] Processing NODE_2463_length_975_cov_2.651054:1-975 [pilon] NODE_4719_length_642_cov_1.289827:1-642 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 24, Coverage: 4, minDepth: 5 [pilon] Confirmed 240 of 642 bases (37.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4719_length_642_cov_1.289827:1-642 [pilon] Processing NODE_676_length_1723_cov_4.028090:1-1723 [pilon] NODE_11198_length_276_cov_13.135484:1-276 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 64, Coverage: 3, minDepth: 5 [pilon] Confirmed 87 of 276 bases (31.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11198_length_276_cov_13.135484:1-276 [pilon] Processing NODE_3044_length_864_cov_20.728129:1-864 [pilon] NODE_4493_length_662_cov_20.789279:1-662 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 280, Coverage: 18, minDepth: 5 [pilon] Confirmed 550 of 662 bases (83.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4493_length_662_cov_20.789279:1-662 [pilon] Processing NODE_2682_length_932_cov_14.554871:1-932 [pilon] NODE_9250_length_356_cov_9.812766:1-356 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 78, Coverage: 6, minDepth: 5 [pilon] Confirmed 243 of 356 bases (68.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9250_length_356_cov_9.812766:1-356 [pilon] Processing NODE_6186_length_525_cov_28.252475:1-525 [pilon] NODE_105_length_2965_cov_24.296062:1-2965 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 1601, Coverage: 66, minDepth: 17 [pilon] Confirmed 2761 of 2965 bases (93.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_105_length_2965_cov_24.296062:1-2965 [pilon] Processing NODE_8347_length_402_cov_34.537367:1-402 [pilon] NODE_1719_length_1174_cov_17.713200:1-1174 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 453, Coverage: 38, minDepth: 10 [pilon] Confirmed 1090 of 1174 bases (92.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1719_length_1174_cov_17.713200:1-1174 [pilon] Processing NODE_2669_length_934_cov_14.665437:1-934 [pilon] NODE_12005_length_246_cov_17.360000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 36, Coverage: 3, minDepth: 5 [pilon] Confirmed 37 of 246 bases (15.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12005_length_246_cov_17.360000:1-246 [pilon] Processing NODE_8364_length_402_cov_12.402135:1-402 [pilon] NODE_14875_length_243_cov_6.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14875_length_243_cov_6.934426:1-243 [pilon] Processing NODE_13831_length_243_cov_15.385246:1-243 [pilon] NODE_14697_length_243_cov_8.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14697_length_243_cov_8.598361:1-243 [pilon] Processing NODE_499_length_1911_cov_24.149721:1-1911 [pilon] NODE_6548_length_500_cov_34.197889:1-500 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 299, Coverage: 54, minDepth: 14 [pilon] Confirmed 383 of 500 bases (76.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6548_length_500_cov_34.197889:1-500 [pilon] Processing NODE_4612_length_651_cov_49.401887:1-651 [pilon] NODE_14239_length_243_cov_12.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14239_length_243_cov_12.319672:1-243 [pilon] Processing NODE_14952_length_243_cov_6.106557:1-243 [pilon] NODE_7717_length_432_cov_2.151125:1-432 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 286 of 432 bases (66.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7717_length_432_cov_2.151125:1-432 [pilon] Processing NODE_2027_length_1079_cov_9.204593:1-1079 [pilon] NODE_13264_length_243_cov_20.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13264_length_243_cov_20.467213:1-243 [pilon] Processing NODE_6378_length_512_cov_2.496164:1-512 [pilon] NODE_11421_length_267_cov_10.965753:1-267 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 133 of 267 bases (49.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11421_length_267_cov_10.965753:1-267 [pilon] Processing NODE_4156_length_698_cov_5.124783:1-698 [pilon] NODE_8980_length_367_cov_28.577236:1-367 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 152, Coverage: 15, minDepth: 5 [pilon] Confirmed 260 of 367 bases (70.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8980_length_367_cov_28.577236:1-367 [pilon] Processing NODE_1636_length_1204_cov_3.612188:1-1204 [pilon] NODE_9189_length_357_cov_32.436441:1-357 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 167, Coverage: 21, minDepth: 5 [pilon] Confirmed 255 of 357 bases (71.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9189_length_357_cov_32.436441:1-357 [pilon] Processing NODE_6671_length_492_cov_22.840970:1-492 [pilon] NODE_340_length_2137_cov_35.948909:1-2137 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 1909, Coverage: 71, minDepth: 18 [pilon] Confirmed 1995 of 2137 bases (93.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_340_length_2137_cov_35.948909:1-2137 [pilon] Processing NODE_14956_length_243_cov_6.040984:1-243 [pilon] NODE_2953_length_881_cov_16.998684:1-881 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 285, Coverage: 29, minDepth: 7 [pilon] Confirmed 722 of 881 bases (81.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2953_length_881_cov_16.998684:1-881 [pilon] Processing NODE_3691_length_756_cov_0.842520:1-756 [pilon] NODE_8141_length_411_cov_17.331034:1-411 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 90, Coverage: 10, minDepth: 5 [pilon] Confirmed 243 of 411 bases (59.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8141_length_411_cov_17.331034:1-411 [pilon] Processing NODE_7881_length_423_cov_33.013245:1-423 [pilon] NODE_5806_length_555_cov_1.534562:1-555 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 297 of 555 bases (53.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5806_length_555_cov_1.534562:1-555 [pilon] Processing NODE_9710_length_338_cov_5.870968:1-338 [pilon] NODE_8013_length_417_cov_34.405405:1-417 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 239, Coverage: 22, minDepth: 6 [pilon] Confirmed 353 of 417 bases (84.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8013_length_417_cov_34.405405:1-417 [pilon] Processing NODE_1427_length_1291_cov_1.888889:1-1291 [pilon] NODE_2463_length_975_cov_2.651054:1-975 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 74, Coverage: 9, minDepth: 5 [pilon] Confirmed 543 of 975 bases (55.69%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2463_length_975_cov_2.651054:1-975 [pilon] Processing NODE_3957_length_720_cov_23.015025:1-720 [pilon] NODE_14122_length_243_cov_13.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14122_length_243_cov_13.319672:1-243 [pilon] Processing NODE_14562_length_243_cov_9.803279:1-243 [pilon] NODE_3044_length_864_cov_20.728129:1-864 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 370, Coverage: 39, minDepth: 10 [pilon] Confirmed 644 of 864 bases (74.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3044_length_864_cov_20.728129:1-864 [pilon] Processing NODE_902_length_1555_cov_27.465830:1-1555 [pilon] NODE_646_length_1752_cov_18.807480:1-1752 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 806, Coverage: 50, minDepth: 13 [pilon] Confirmed 1423 of 1752 bases (81.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_646_length_1752_cov_18.807480:1-1752 [pilon] Processing NODE_8312_length_404_cov_2.254417:1-404 [pilon] NODE_11552_length_261_cov_46.521429:1-261 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 132, Coverage: 13, minDepth: 5 [pilon] Confirmed 208 of 261 bases (79.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11552_length_261_cov_46.521429:1-261 [pilon] Processing NODE_6987_length_472_cov_23.048433:1-472 [pilon] NODE_13914_length_243_cov_14.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13914_length_243_cov_14.795082:1-243 [pilon] Processing NODE_226_length_2414_cov_15.551679:1-2414 [pilon] NODE_8530_length_392_cov_35.509225:1-392 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 225, Coverage: 26, minDepth: 7 [pilon] Confirmed 252 of 392 bases (64.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8530_length_392_cov_35.509225:1-392 [pilon] Processing NODE_6154_length_528_cov_5.029484:1-528 [pilon] NODE_676_length_1723_cov_4.028090:1-1723 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 169, Coverage: 12, minDepth: 5 [pilon] Confirmed 1323 of 1723 bases (76.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_676_length_1723_cov_4.028090:1-1723 [pilon] Processing NODE_5721_length_561_cov_52.995455:1-561 [pilon] NODE_9141_length_360_cov_14.046025:1-360 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 77, Coverage: 10, minDepth: 5 [pilon] Confirmed 211 of 360 bases (58.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9141_length_360_cov_14.046025:1-360 [pilon] Processing NODE_10826_length_291_cov_23.017647:1-291 [pilon] NODE_2859_length_900_cov_17.743261:1-900 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 339, Coverage: 37, minDepth: 9 [pilon] Confirmed 702 of 900 bases (78.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2859_length_900_cov_17.743261:1-900 [pilon] Processing NODE_8382_length_401_cov_11.000000:1-401 [pilon] NODE_2682_length_932_cov_14.554871:1-932 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 278, Coverage: 28, minDepth: 7 [pilon] Confirmed 750 of 932 bases (80.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2682_length_932_cov_14.554871:1-932 [pilon] Processing NODE_7244_length_457_cov_46.949405:1-457 [pilon] NODE_6186_length_525_cov_28.252475:1-525 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 245, Coverage: 28, minDepth: 7 [pilon] Confirmed 470 of 525 bases (89.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6186_length_525_cov_28.252475:1-525 [pilon] Processing NODE_6843_length_481_cov_2.250000:1-481 [pilon] NODE_8347_length_402_cov_34.537367:1-402 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 241, Coverage: 13, minDepth: 5 [pilon] Confirmed 175 of 402 bases (43.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8347_length_402_cov_34.537367:1-402 [pilon] Processing NODE_2333_length_1004_cov_7.485844:1-1004 [pilon] NODE_1636_length_1204_cov_3.612188:1-1204 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 87, Coverage: 9, minDepth: 5 [pilon] Confirmed 979 of 1204 bases (81.31%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1636_length_1204_cov_3.612188:1-1204 [pilon] Processing NODE_4703_length_643_cov_2.582375:1-643 [pilon] NODE_13831_length_243_cov_15.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13831_length_243_cov_15.385246:1-243 [pilon] Processing NODE_5840_length_552_cov_20.638051:1-552 [pilon] NODE_2669_length_934_cov_14.665437:1-934 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 267, Coverage: 37, minDepth: 9 [pilon] Confirmed 815 of 934 bases (87.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2669_length_934_cov_14.665437:1-934 [pilon] Processing NODE_10877_length_289_cov_8.869048:1-289 [pilon] NODE_14952_length_243_cov_6.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14952_length_243_cov_6.106557:1-243 [pilon] Processing NODE_10391_length_309_cov_17.904255:1-309 [pilon] NODE_8364_length_402_cov_12.402135:1-402 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 88, Coverage: 7, minDepth: 5 [pilon] Confirmed 265 of 402 bases (65.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8364_length_402_cov_12.402135:1-402 [pilon] Processing NODE_11279_length_273_cov_11.848684:1-273 [pilon] NODE_3957_length_720_cov_23.015025:1-720 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 366, Coverage: 42, minDepth: 11 [pilon] Confirmed 678 of 720 bases (94.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3957_length_720_cov_23.015025:1-720 [pilon] Processing NODE_3624_length_765_cov_5.192547:1-765 [pilon] NODE_2027_length_1079_cov_9.204593:1-1079 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 215, Coverage: 25, minDepth: 6 [pilon] Confirmed 891 of 1079 bases (82.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2027_length_1079_cov_9.204593:1-1079 [pilon] Processing NODE_7216_length_459_cov_17.130178:1-459 [pilon] NODE_4612_length_651_cov_49.401887:1-651 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 576, Coverage: 86, minDepth: 22 [pilon] Confirmed 577 of 651 bases (88.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4612_length_651_cov_49.401887:1-651 [pilon] Processing NODE_14127_length_243_cov_13.295082:1-243 [pilon] NODE_499_length_1911_cov_24.149721:1-1911 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 1077, Coverage: 68, minDepth: 17 [pilon] Confirmed 1627 of 1911 bases (85.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_499_length_1911_cov_24.149721:1-1911 [pilon] NODE_6671_length_492_cov_22.840970:1-492 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 177, Coverage: 25, minDepth: 6 [pilon] Confirmed 357 of 492 bases (72.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6671_length_492_cov_22.840970:1-492 [pilon] Processing NODE_1098_length_1442_cov_10.416351:1-1442 [pilon] Processing NODE_10850_length_290_cov_29.023669:1-290 [pilon] NODE_4156_length_698_cov_5.124783:1-698 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 63, Coverage: 11, minDepth: 5 [pilon] Confirmed 506 of 698 bases (72.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4156_length_698_cov_5.124783:1-698 [pilon] Processing NODE_14309_length_243_cov_11.786885:1-243 [pilon] NODE_6378_length_512_cov_2.496164:1-512 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 38, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 512 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6378_length_512_cov_2.496164:1-512 [pilon] Processing NODE_1266_length_1356_cov_13.334413:1-1356 [pilon] NODE_3691_length_756_cov_0.842520:1-756 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 24, Coverage: 3, minDepth: 5 [pilon] Confirmed 243 of 756 bases (32.14%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3691_length_756_cov_0.842520:1-756 [pilon] Processing NODE_4686_length_644_cov_58.697897:1-644 [pilon] NODE_902_length_1555_cov_27.465830:1-1555 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 1038, Coverage: 49, minDepth: 12 [pilon] Confirmed 1382 of 1555 bases (88.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_902_length_1555_cov_27.465830:1-1555 [pilon] Processing NODE_11024_length_282_cov_22.086957:1-282 [pilon] NODE_9710_length_338_cov_5.870968:1-338 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 338 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9710_length_338_cov_5.870968:1-338 [pilon] Processing NODE_8310_length_404_cov_5.024735:1-404 [pilon] NODE_7881_length_423_cov_33.013245:1-423 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 238, Coverage: 25, minDepth: 6 [pilon] Confirmed 282 of 423 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7881_length_423_cov_33.013245:1-423 [pilon] Processing NODE_12277_length_243_cov_33.737705:1-243 [pilon] NODE_14956_length_243_cov_6.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14956_length_243_cov_6.040984:1-243 [pilon] Processing NODE_2685_length_932_cov_1.419236:1-932 [pilon] NODE_1427_length_1291_cov_1.888889:1-1291 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 94, Coverage: 9, minDepth: 5 [pilon] Confirmed 1156 of 1291 bases (89.54%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1427_length_1291_cov_1.888889:1-1291 [pilon] Processing NODE_7082_length_466_cov_2.017391:1-466 [pilon] NODE_14562_length_243_cov_9.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14562_length_243_cov_9.803279:1-243 [pilon] Processing NODE_8610_length_387_cov_29.687970:1-387 [pilon] NODE_8312_length_404_cov_2.254417:1-404 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 404 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8312_length_404_cov_2.254417:1-404 [pilon] Processing NODE_4360_length_675_cov_1.891697:1-675 [pilon] NODE_6987_length_472_cov_23.048433:1-472 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 179, Coverage: 33, minDepth: 8 [pilon] Confirmed 409 of 472 bases (86.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6987_length_472_cov_23.048433:1-472 [pilon] Processing NODE_11578_length_261_cov_17.800000:1-261 [pilon] NODE_4703_length_643_cov_2.582375:1-643 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 36, Coverage: 7, minDepth: 5 [pilon] Confirmed 373 of 643 bases (58.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4703_length_643_cov_2.582375:1-643 [pilon] Processing NODE_3665_length_759_cov_53.313480:1-759 [pilon] NODE_6154_length_528_cov_5.029484:1-528 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 50, Coverage: 12, minDepth: 5 [pilon] Confirmed 404 of 528 bases (76.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6154_length_528_cov_5.029484:1-528 [pilon] Processing NODE_5565_length_573_cov_12.305310:1-573 [pilon] NODE_8382_length_401_cov_11.000000:1-401 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 74, Coverage: 4, minDepth: 5 [pilon] Confirmed 256 of 401 bases (63.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8382_length_401_cov_11.000000:1-401 [pilon] Processing NODE_1619_length_1211_cov_6.855963:1-1211 [pilon] NODE_226_length_2414_cov_15.551679:1-2414 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 940, Coverage: 32, minDepth: 8 [pilon] Confirmed 1765 of 2414 bases (73.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_226_length_2414_cov_15.551679:1-2414 [pilon] Processing NODE_6217_length_523_cov_15.325871:1-523 [pilon] NODE_10826_length_291_cov_23.017647:1-291 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 79, Coverage: 4, minDepth: 5 [pilon] Confirmed 144 of 291 bases (49.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10826_length_291_cov_23.017647:1-291 [pilon] Processing NODE_7156_length_462_cov_18.146628:1-462 [pilon] NODE_5721_length_561_cov_52.995455:1-561 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 590, Coverage: 69, minDepth: 17 [pilon] Confirmed 309 of 561 bases (55.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5721_length_561_cov_52.995455:1-561 [pilon] Processing NODE_8491_length_394_cov_32.150183:1-394 [pilon] NODE_7244_length_457_cov_46.949405:1-457 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 376, Coverage: 68, minDepth: 17 [pilon] Confirmed 401 of 457 bases (87.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7244_length_457_cov_46.949405:1-457 [pilon] Processing NODE_5207_length_601_cov_1.752083:1-601 [pilon] NODE_6843_length_481_cov_2.250000:1-481 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 206 of 481 bases (42.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6843_length_481_cov_2.250000:1-481 [pilon] Processing NODE_10502_length_304_cov_25.896175:1-304 [pilon] NODE_3624_length_765_cov_5.192547:1-765 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 106, Coverage: 8, minDepth: 5 [pilon] Confirmed 522 of 765 bases (68.24%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3624_length_765_cov_5.192547:1-765 [pilon] Processing NODE_13778_length_243_cov_15.844262:1-243 [pilon] NODE_2333_length_1004_cov_7.485844:1-1004 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 184, Coverage: 23, minDepth: 6 [pilon] Confirmed 576 of 1004 bases (57.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2333_length_1004_cov_7.485844:1-1004 [pilon] Processing NODE_2045_length_1074_cov_2.648478:1-1074 [pilon] NODE_5840_length_552_cov_20.638051:1-552 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 180, Coverage: 22, minDepth: 6 [pilon] Confirmed 420 of 552 bases (76.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5840_length_552_cov_20.638051:1-552 [pilon] Processing NODE_1960_length_1095_cov_30.206366:1-1095 [pilon] NODE_11024_length_282_cov_22.086957:1-282 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 67, Coverage: 9, minDepth: 5 [pilon] Confirmed 201 of 282 bases (71.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11024_length_282_cov_22.086957:1-282 [pilon] Processing NODE_4185_length_695_cov_16.045296:1-695 [pilon] NODE_10391_length_309_cov_17.904255:1-309 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 92, Coverage: 2, minDepth: 5 [pilon] Confirmed 98 of 309 bases (31.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10391_length_309_cov_17.904255:1-309 [pilon] Processing NODE_388_length_2062_cov_27.501803:1-2062 [pilon] NODE_14127_length_243_cov_13.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14127_length_243_cov_13.295082:1-243 [pilon] Processing NODE_14826_length_243_cov_7.459016:1-243 [pilon] NODE_11279_length_273_cov_11.848684:1-273 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 42, Coverage: 3, minDepth: 5 [pilon] Confirmed 69 of 273 bases (25.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11279_length_273_cov_11.848684:1-273 [pilon] Processing NODE_5482_length_579_cov_5.303493:1-579 [pilon] NODE_10877_length_289_cov_8.869048:1-289 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 289 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10877_length_289_cov_8.869048:1-289 [pilon] Processing NODE_3614_length_767_cov_2.317337:1-767 [pilon] NODE_10850_length_290_cov_29.023669:1-290 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 113, Coverage: 13, minDepth: 5 [pilon] Confirmed 207 of 290 bases (71.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10850_length_290_cov_29.023669:1-290 [pilon] Processing NODE_11712_length_255_cov_29.231343:1-255 [pilon] NODE_14309_length_243_cov_11.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14309_length_243_cov_11.786885:1-243 [pilon] Processing NODE_2977_length_878_cov_11.623514:1-878 [pilon] NODE_7216_length_459_cov_17.130178:1-459 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 114, Coverage: 12, minDepth: 5 [pilon] Confirmed 211 of 459 bases (45.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7216_length_459_cov_17.130178:1-459 [pilon] Processing NODE_10038_length_324_cov_13.221675:1-324 [pilon] NODE_1098_length_1442_cov_10.416351:1-1442 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 406, Coverage: 32, minDepth: 8 [pilon] Confirmed 1325 of 1442 bases (91.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1098_length_1442_cov_10.416351:1-1442 [pilon] Processing NODE_10404_length_309_cov_10.356383:1-309 [pilon] NODE_3665_length_759_cov_53.313480:1-759 log: [pilon] frags shovill.bam: coverage 102 [pilon] Total Reads: 765, Coverage: 102, minDepth: 26 [pilon] Confirmed 678 of 759 bases (89.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3665_length_759_cov_53.313480:1-759 [pilon] Processing NODE_13306_length_243_cov_20.204918:1-243 [pilon] NODE_12277_length_243_cov_33.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 86, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12277_length_243_cov_33.737705:1-243 [pilon] Processing NODE_8721_length_381_cov_16.961538:1-381 [pilon] NODE_8310_length_404_cov_5.024735:1-404 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 184 of 404 bases (45.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8310_length_404_cov_5.024735:1-404 [pilon] Processing NODE_5394_length_584_cov_30.403888:1-584 [pilon] NODE_2685_length_932_cov_1.419236:1-932 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 503 of 932 bases (53.97%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2685_length_932_cov_1.419236:1-932 [pilon] Processing NODE_6893_length_478_cov_0.809524:1-478 [pilon] NODE_1266_length_1356_cov_13.334413:1-1356 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 383, Coverage: 32, minDepth: 8 [pilon] Confirmed 1075 of 1356 bases (79.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1266_length_1356_cov_13.334413:1-1356 [pilon] Processing NODE_7161_length_462_cov_8.677419:1-462 [pilon] NODE_4686_length_644_cov_58.697897:1-644 log: [pilon] frags shovill.bam: coverage 105 [pilon] Total Reads: 695, Coverage: 105, minDepth: 26 [pilon] Confirmed 560 of 644 bases (86.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4686_length_644_cov_58.697897:1-644 [pilon] Processing NODE_11884_length_249_cov_27.773438:1-249 [pilon] NODE_7082_length_466_cov_2.017391:1-466 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 26, Coverage: 4, minDepth: 5 [pilon] Confirmed 213 of 466 bases (45.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7082_length_466_cov_2.017391:1-466 [pilon] Processing NODE_8202_length_408_cov_20.212544:1-408 [pilon] NODE_5207_length_601_cov_1.752083:1-601 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 249 of 601 bases (41.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5207_length_601_cov_1.752083:1-601 [pilon] Processing NODE_6531_length_501_cov_19.386842:1-501 [pilon] NODE_8610_length_387_cov_29.687970:1-387 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 192, Coverage: 15, minDepth: 5 [pilon] Confirmed 245 of 387 bases (63.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8610_length_387_cov_29.687970:1-387 [pilon] Processing NODE_8645_length_385_cov_39.348485:1-385 [pilon] NODE_4360_length_675_cov_1.891697:1-675 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 35, Coverage: 6, minDepth: 5 [pilon] Confirmed 434 of 675 bases (64.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4360_length_675_cov_1.891697:1-675 [pilon] Processing NODE_3285_length_817_cov_16.239943:1-817 [pilon] NODE_11578_length_261_cov_17.800000:1-261 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 59, Coverage: 3, minDepth: 5 [pilon] Confirmed 86 of 261 bases (32.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11578_length_261_cov_17.800000:1-261 [pilon] Processing NODE_10652_length_300_cov_10.620112:1-300 [pilon] NODE_7156_length_462_cov_18.146628:1-462 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 137, Coverage: 12, minDepth: 5 [pilon] Confirmed 260 of 462 bases (56.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7156_length_462_cov_18.146628:1-462 [pilon] NODE_6217_length_523_cov_15.325871:1-523 log: [pilon] Processing NODE_11612_length_259_cov_11.818841:1-259 [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 152, Coverage: 14, minDepth: 5 [pilon] Confirmed 424 of 523 bases (81.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6217_length_523_cov_15.325871:1-523 [pilon] Processing NODE_3170_length_837_cov_28.398045:1-837 [pilon] NODE_1619_length_1211_cov_6.855963:1-1211 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 183, Coverage: 19, minDepth: 5 [pilon] Confirmed 902 of 1211 bases (74.48%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1619_length_1211_cov_6.855963:1-1211 [pilon] Processing NODE_3639_length_763_cov_6.802181:1-763 [pilon] NODE_8491_length_394_cov_32.150183:1-394 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 187, Coverage: 20, minDepth: 5 [pilon] Confirmed 260 of 394 bases (65.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8491_length_394_cov_32.150183:1-394 [pilon] Processing NODE_3532_length_779_cov_15.598784:1-779 [pilon] NODE_5565_length_573_cov_12.305310:1-573 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 122, Coverage: 18, minDepth: 5 [pilon] Confirmed 469 of 573 bases (81.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5565_length_573_cov_12.305310:1-573 [pilon] Processing NODE_3486_length_787_cov_8.055556:1-787 [pilon] NODE_4185_length_695_cov_16.045296:1-695 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 222, Coverage: 28, minDepth: 7 [pilon] Confirmed 609 of 695 bases (87.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4185_length_695_cov_16.045296:1-695 [pilon] Processing NODE_11448_length_265_cov_11.298611:1-265 [pilon] NODE_10502_length_304_cov_25.896175:1-304 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 95, Coverage: 5, minDepth: 5 [pilon] Confirmed 134 of 304 bases (44.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10502_length_304_cov_25.896175:1-304 [pilon] Processing NODE_13159_length_243_cov_21.450820:1-243 [pilon] NODE_13778_length_243_cov_15.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13778_length_243_cov_15.844262:1-243 [pilon] Processing NODE_6979_length_473_cov_1.136364:1-473 [pilon] NODE_13306_length_243_cov_20.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13306_length_243_cov_20.204918:1-243 [pilon] Processing NODE_11718_length_255_cov_27.208955:1-255 [pilon] NODE_2045_length_1074_cov_2.648478:1-1074 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 65, Coverage: 8, minDepth: 5 [pilon] Confirmed 670 of 1074 bases (62.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2045_length_1074_cov_2.648478:1-1074 [pilon] Processing NODE_8904_length_371_cov_70.980000:1-371 [pilon] NODE_14826_length_243_cov_7.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14826_length_243_cov_7.459016:1-243 [pilon] Processing NODE_3416_length_796_cov_34.877037:1-796 [pilon] NODE_5482_length_579_cov_5.303493:1-579 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 62, Coverage: 10, minDepth: 5 [pilon] Confirmed 504 of 579 bases (87.05%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5482_length_579_cov_5.303493:1-579 [pilon] Processing NODE_6291_length_518_cov_34.085642:1-518 [pilon] NODE_3614_length_767_cov_2.317337:1-767 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 38, Coverage: 6, minDepth: 5 [pilon] Confirmed 490 of 767 bases (63.89%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3614_length_767_cov_2.317337:1-767 [pilon] Processing NODE_5117_length_608_cov_35.112936:1-608 [pilon] NODE_1960_length_1095_cov_30.206366:1-1095 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 772, Coverage: 51, minDepth: 13 [pilon] Confirmed 944 of 1095 bases (86.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1960_length_1095_cov_30.206366:1-1095 [pilon] Processing NODE_11530_length_263_cov_7.992958:1-263 [pilon] NODE_11712_length_255_cov_29.231343:1-255 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 81, Coverage: 6, minDepth: 5 [pilon] Confirmed 157 of 255 bases (61.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11712_length_255_cov_29.231343:1-255 [pilon] Processing NODE_15016_length_243_cov_5.254098:1-243 [pilon] NODE_8721_length_381_cov_16.961538:1-381 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 104, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 381 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8721_length_381_cov_16.961538:1-381 [pilon] Processing NODE_13122_length_243_cov_21.762295:1-243 [pilon] NODE_388_length_2062_cov_27.501803:1-2062 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 1081, Coverage: 40, minDepth: 10 [pilon] Confirmed 1547 of 2062 bases (75.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_388_length_2062_cov_27.501803:1-2062 [pilon] Processing NODE_2944_length_882_cov_45.124836:1-882 [pilon] NODE_2977_length_878_cov_11.623514:1-878 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 189, Coverage: 15, minDepth: 5 [pilon] Confirmed 621 of 878 bases (70.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2977_length_878_cov_11.623514:1-878 [pilon] Processing NODE_7619_length_436_cov_46.285714:1-436 [pilon] NODE_6531_length_501_cov_19.386842:1-501 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 174, Coverage: 20, minDepth: 5 [pilon] Confirmed 437 of 501 bases (87.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6531_length_501_cov_19.386842:1-501 [pilon] Processing NODE_13209_length_243_cov_20.983607:1-243 [pilon] NODE_10038_length_324_cov_13.221675:1-324 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 63, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 324 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10038_length_324_cov_13.221675:1-324 [pilon] Processing NODE_15021_length_243_cov_5.188525:1-243 [pilon] NODE_6893_length_478_cov_0.809524:1-478 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 478 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6893_length_478_cov_0.809524:1-478 [pilon] Processing NODE_12762_length_243_cov_25.442623:1-243 [pilon] NODE_5394_length_584_cov_30.403888:1-584 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 342, Coverage: 54, minDepth: 14 [pilon] Confirmed 457 of 584 bases (78.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5394_length_584_cov_30.403888:1-584 [pilon] Processing NODE_15260_length_125_cov_11.500000:1-125 [pilon] NODE_10404_length_309_cov_10.356383:1-309 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 42, Coverage: 3, minDepth: 5 [pilon] Confirmed 97 of 309 bases (31.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10404_length_309_cov_10.356383:1-309 [pilon] Processing NODE_3215_length_831_cov_2.456338:1-831 [pilon] NODE_7161_length_462_cov_8.677419:1-462 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 73, Coverage: 10, minDepth: 5 [pilon] Confirmed 349 of 462 bases (75.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7161_length_462_cov_8.677419:1-462 [pilon] Processing NODE_7614_length_437_cov_2.971519:1-437 [pilon] NODE_11884_length_249_cov_27.773438:1-249 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 67, Coverage: 6, minDepth: 5 [pilon] Confirmed 176 of 249 bases (70.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11884_length_249_cov_27.773438:1-249 [pilon] Processing NODE_4152_length_699_cov_0.986159:1-699 [pilon] NODE_8202_length_408_cov_20.212544:1-408 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 128, Coverage: 23, minDepth: 6 [pilon] Confirmed 295 of 408 bases (72.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8202_length_408_cov_20.212544:1-408 [pilon] Processing NODE_14216_length_243_cov_12.491803:1-243 [pilon] NODE_11448_length_265_cov_11.298611:1-265 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 38, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 265 bases (49.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11448_length_265_cov_11.298611:1-265 [pilon] Processing NODE_2577_length_951_cov_1.806024:1-951 [pilon] NODE_8645_length_385_cov_39.348485:1-385 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 238, Coverage: 36, minDepth: 9 [pilon] Confirmed 340 of 385 bases (88.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8645_length_385_cov_39.348485:1-385 [pilon] Processing NODE_10280_length_314_cov_23.642487:1-314 [pilon] NODE_3285_length_817_cov_16.239943:1-817 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 363, Coverage: 43, minDepth: 11 [pilon] Confirmed 458 of 817 bases (56.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3285_length_817_cov_16.239943:1-817 [pilon] Processing NODE_6351_length_513_cov_34.596939:1-513 [pilon] NODE_10652_length_300_cov_10.620112:1-300 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 41, Coverage: 3, minDepth: 5 [pilon] Confirmed 52 of 300 bases (17.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10652_length_300_cov_10.620112:1-300 [pilon] Processing NODE_836_length_1608_cov_27.455279:1-1608 [pilon] NODE_3639_length_763_cov_6.802181:1-763 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 114, Coverage: 17, minDepth: 5 [pilon] Confirmed 716 of 763 bases (93.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3639_length_763_cov_6.802181:1-763 [pilon] Processing NODE_4476_length_664_cov_1.071823:1-664 [pilon] NODE_13159_length_243_cov_21.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13159_length_243_cov_21.450820:1-243 [pilon] Processing NODE_1397_length_1298_cov_2.498726:1-1298 [pilon] NODE_11718_length_255_cov_27.208955:1-255 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 74, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 255 bases (50.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11718_length_255_cov_27.208955:1-255 [pilon] Processing NODE_2488_length_970_cov_5.571260:1-970 [pilon] NODE_11612_length_259_cov_11.818841:1-259 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 31, Coverage: 4, minDepth: 5 [pilon] Confirmed 93 of 259 bases (35.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11612_length_259_cov_11.818841:1-259 [pilon] Processing NODE_5422_length_582_cov_27.824295:1-582 [pilon] NODE_3532_length_779_cov_15.598784:1-779 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 338, Coverage: 41, minDepth: 10 [pilon] Confirmed 522 of 779 bases (67.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3532_length_779_cov_15.598784:1-779 [pilon] Processing NODE_1983_length_1091_cov_5.151546:1-1091 [pilon] NODE_3170_length_837_cov_28.398045:1-837 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 469, Coverage: 42, minDepth: 11 [pilon] Confirmed 575 of 837 bases (68.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3170_length_837_cov_28.398045:1-837 [pilon] Processing NODE_5843_length_552_cov_16.730858:1-552 [pilon] NODE_3486_length_787_cov_8.055556:1-787 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 148, Coverage: 15, minDepth: 5 [pilon] Confirmed 580 of 787 bases (73.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3486_length_787_cov_8.055556:1-787 [pilon] Processing NODE_7155_length_462_cov_18.202346:1-462 [pilon] NODE_6979_length_473_cov_1.136364:1-473 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 91 of 473 bases (19.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6979_length_473_cov_1.136364:1-473 [pilon] Processing NODE_2459_length_975_cov_34.668618:1-975 [pilon] NODE_13209_length_243_cov_20.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13209_length_243_cov_20.983607:1-243 [pilon] Processing NODE_2084_length_1063_cov_17.118896:1-1063 [pilon] NODE_13122_length_243_cov_21.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13122_length_243_cov_21.762295:1-243 [pilon] Processing NODE_12425_length_243_cov_30.409836:1-243 [pilon] NODE_11530_length_263_cov_7.992958:1-263 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 39, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 263 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11530_length_263_cov_7.992958:1-263 [pilon] Processing NODE_2321_length_1006_cov_15.597740:1-1006 [pilon] NODE_6291_length_518_cov_34.085642:1-518 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 308, Coverage: 53, minDepth: 13 [pilon] Confirmed 432 of 518 bases (83.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6291_length_518_cov_34.085642:1-518 [pilon] Processing NODE_2555_length_956_cov_2.834731:1-956 [pilon] NODE_5117_length_608_cov_35.112936:1-608 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 381, Coverage: 62, minDepth: 16 [pilon] Confirmed 539 of 608 bases (88.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5117_length_608_cov_35.112936:1-608 [pilon] Processing NODE_10622_length_300_cov_22.212291:1-300 [pilon] NODE_8904_length_371_cov_70.980000:1-371 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 395, Coverage: 66, minDepth: 17 [pilon] Confirmed 329 of 371 bases (88.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8904_length_371_cov_70.980000:1-371 [pilon] Processing NODE_6112_length_531_cov_16.802439:1-531 [pilon] NODE_3416_length_796_cov_34.877037:1-796 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 614, Coverage: 44, minDepth: 11 [pilon] Confirmed 601 of 796 bases (75.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3416_length_796_cov_34.877037:1-796 [pilon] Processing NODE_495_length_1913_cov_1.911830:1-1913 [pilon] NODE_2577_length_951_cov_1.806024:1-951 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 62, Coverage: 8, minDepth: 5 [pilon] Confirmed 679 of 951 bases (71.40%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2577_length_951_cov_1.806024:1-951 [pilon] Processing NODE_5494_length_578_cov_3.288840:1-578 [pilon] NODE_15016_length_243_cov_5.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15016_length_243_cov_5.254098:1-243 [pilon] Processing NODE_2188_length_1037_cov_15.728166:1-1037 [pilon] NODE_12762_length_243_cov_25.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12762_length_243_cov_25.442623:1-243 [pilon] Processing NODE_14844_length_243_cov_7.262295:1-243 [pilon] NODE_4152_length_699_cov_0.986159:1-699 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 21, Coverage: 3, minDepth: 5 [pilon] Confirmed 259 of 699 bases (37.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4152_length_699_cov_0.986159:1-699 [pilon] Processing NODE_1566_length_1232_cov_14.148515:1-1232 [pilon] NODE_7619_length_436_cov_46.285714:1-436 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 348, Coverage: 59, minDepth: 15 [pilon] Confirmed 377 of 436 bases (86.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7619_length_436_cov_46.285714:1-436 [pilon] Processing NODE_7422_length_447_cov_8.601227:1-447 [pilon] NODE_10280_length_314_cov_23.642487:1-314 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 117, Coverage: 7, minDepth: 5 [pilon] Confirmed 197 of 314 bases (62.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10280_length_314_cov_23.642487:1-314 [pilon] Processing NODE_302_length_2238_cov_22.620217:1-2238 [pilon] NODE_15021_length_243_cov_5.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15021_length_243_cov_5.188525:1-243 [pilon] Processing NODE_6534_length_501_cov_16.673684:1-501 [pilon] NODE_15260_length_125_cov_11.500000:1-125 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 125 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15260_length_125_cov_11.500000:1-125 [pilon] Processing NODE_2200_length_1034_cov_2.374589:1-1034 [pilon] NODE_7614_length_437_cov_2.971519:1-437 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 325 of 437 bases (74.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7614_length_437_cov_2.971519:1-437 [pilon] Processing NODE_13245_length_243_cov_20.680328:1-243 [pilon] NODE_14216_length_243_cov_12.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14216_length_243_cov_12.491803:1-243 [pilon] Processing NODE_3450_length_791_cov_46.423881:1-791 [pilon] NODE_2944_length_882_cov_45.124836:1-882 log: [pilon] frags shovill.bam: coverage 97 [pilon] Total Reads: 756, Coverage: 97, minDepth: 24 [pilon] Confirmed 717 of 882 bases (81.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2944_length_882_cov_45.124836:1-882 [pilon] Processing NODE_12695_length_243_cov_26.303279:1-243 [pilon] NODE_5843_length_552_cov_16.730858:1-552 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 165, Coverage: 18, minDepth: 5 [pilon] Confirmed 402 of 552 bases (72.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5843_length_552_cov_16.730858:1-552 [pilon] Processing NODE_6382_length_512_cov_0.956522:1-512 [pilon] NODE_3215_length_831_cov_2.456338:1-831 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 50, Coverage: 7, minDepth: 5 [pilon] Confirmed 515 of 831 bases (61.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3215_length_831_cov_2.456338:1-831 [pilon] Processing NODE_11221_length_275_cov_15.201299:1-275 [pilon] NODE_4476_length_664_cov_1.071823:1-664 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 285 of 664 bases (42.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4476_length_664_cov_1.071823:1-664 [pilon] Processing NODE_12664_length_243_cov_26.631148:1-243 [pilon] NODE_836_length_1608_cov_27.455279:1-1608 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 969, Coverage: 70, minDepth: 18 [pilon] Confirmed 1450 of 1608 bases (90.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_836_length_1608_cov_27.455279:1-1608 [pilon] Processing NODE_13339_length_243_cov_19.926230:1-243 [pilon] NODE_6351_length_513_cov_34.596939:1-513 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 304, Coverage: 55, minDepth: 14 [pilon] Confirmed 418 of 513 bases (81.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6351_length_513_cov_34.596939:1-513 [pilon] Processing NODE_14386_length_243_cov_11.172131:1-243 [pilon] NODE_2488_length_970_cov_5.571260:1-970 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 117, Coverage: 15, minDepth: 5 [pilon] Confirmed 825 of 970 bases (85.05%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2488_length_970_cov_5.571260:1-970 [pilon] Processing NODE_7421_length_447_cov_10.687117:1-447 [pilon] NODE_1983_length_1091_cov_5.151546:1-1091 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 139, Coverage: 12, minDepth: 5 [pilon] Confirmed 922 of 1091 bases (84.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1983_length_1091_cov_5.151546:1-1091 [pilon] Processing NODE_4380_length_673_cov_13.077899:1-673 [pilon] NODE_5422_length_582_cov_27.824295:1-582 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 320, Coverage: 37, minDepth: 9 [pilon] Confirmed 371 of 582 bases (63.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5422_length_582_cov_27.824295:1-582 [pilon] Processing NODE_1012_length_1489_cov_3.772661:1-1489 [pilon] NODE_12425_length_243_cov_30.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12425_length_243_cov_30.409836:1-243 [pilon] Processing NODE_6743_length_487_cov_3.158470:1-487 [pilon] NODE_1397_length_1298_cov_2.498726:1-1298 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 84, Coverage: 8, minDepth: 5 [pilon] Confirmed 818 of 1298 bases (63.02%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1397_length_1298_cov_2.498726:1-1298 [pilon] Processing NODE_4142_length_699_cov_34.700692:1-699 [pilon] NODE_7155_length_462_cov_18.202346:1-462 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 141, Coverage: 15, minDepth: 5 [pilon] Confirmed 302 of 462 bases (65.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7155_length_462_cov_18.202346:1-462 [pilon] Processing NODE_11630_length_258_cov_22.729927:1-258 [pilon] NODE_2084_length_1063_cov_17.118896:1-1063 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 350, Coverage: 43, minDepth: 11 [pilon] Confirmed 765 of 1063 bases (71.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2084_length_1063_cov_17.118896:1-1063 [pilon] Processing NODE_10020_length_324_cov_23.975369:1-324 [pilon] NODE_2459_length_975_cov_34.668618:1-975 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 712, Coverage: 77, minDepth: 19 [pilon] Confirmed 873 of 975 bases (89.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2459_length_975_cov_34.668618:1-975 [pilon] Processing NODE_550_length_1858_cov_2.918250:1-1858 [pilon] NODE_2188_length_1037_cov_15.728166:1-1037 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 386, Coverage: 40, minDepth: 10 [pilon] Confirmed 809 of 1037 bases (78.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2188_length_1037_cov_15.728166:1-1037 [pilon] Processing NODE_6954_length_474_cov_13.555241:1-474 [pilon] NODE_10622_length_300_cov_22.212291:1-300 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 68, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 300 bases (43.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10622_length_300_cov_22.212291:1-300 [pilon] Processing NODE_7535_length_441_cov_23.915625:1-441 [pilon] NODE_6112_length_531_cov_16.802439:1-531 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 163, Coverage: 15, minDepth: 5 [pilon] Confirmed 406 of 531 bases (76.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6112_length_531_cov_16.802439:1-531 [pilon] Processing NODE_2538_length_959_cov_29.176611:1-959 [pilon] NODE_2555_length_956_cov_2.834731:1-956 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 86, Coverage: 10, minDepth: 5 [pilon] Confirmed 804 of 956 bases (84.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2555_length_956_cov_2.834731:1-956 [pilon] Processing NODE_11365_length_269_cov_12.601351:1-269 [pilon] NODE_2321_length_1006_cov_15.597740:1-1006 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 343, Coverage: 43, minDepth: 11 [pilon] Confirmed 824 of 1006 bases (81.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2321_length_1006_cov_15.597740:1-1006 [pilon] Processing NODE_4849_length_631_cov_1.737255:1-631 [pilon] NODE_495_length_1913_cov_1.911830:1-1913 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 114, Coverage: 7, minDepth: 5 [pilon] Confirmed 1130 of 1913 bases (59.07%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_495_length_1913_cov_1.911830:1-1913 [pilon] Processing NODE_3585_length_771_cov_16.924615:1-771 [pilon] NODE_302_length_2238_cov_22.620217:1-2238 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 1231, Coverage: 68, minDepth: 17 [pilon] Confirmed 1903 of 2238 bases (85.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_302_length_2238_cov_22.620217:1-2238 [pilon] Processing NODE_4170_length_697_cov_2.090278:1-697 [pilon] NODE_5494_length_578_cov_3.288840:1-578 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 38, Coverage: 8, minDepth: 5 [pilon] Confirmed 338 of 578 bases (58.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5494_length_578_cov_3.288840:1-578 [pilon] Processing NODE_3690_length_756_cov_10.272441:1-756 [pilon] NODE_14844_length_243_cov_7.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14844_length_243_cov_7.262295:1-243 [pilon] Processing NODE_2324_length_1005_cov_20.830317:1-1005 [pilon] NODE_1566_length_1232_cov_14.148515:1-1232 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 389, Coverage: 28, minDepth: 7 [pilon] Confirmed 1149 of 1232 bases (93.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1566_length_1232_cov_14.148515:1-1232 [pilon] Processing NODE_14224_length_243_cov_12.385246:1-243 [pilon] NODE_12695_length_243_cov_26.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12695_length_243_cov_26.303279:1-243 [pilon] Processing NODE_1648_length_1200_cov_36.744208:1-1200 [pilon] NODE_2200_length_1034_cov_2.374589:1-1034 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 75, Coverage: 9, minDepth: 5 [pilon] Confirmed 830 of 1034 bases (80.27%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2200_length_1034_cov_2.374589:1-1034 [pilon] Processing NODE_10891_length_288_cov_24.209581:1-288 [pilon] NODE_7422_length_447_cov_8.601227:1-447 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 81, Coverage: 12, minDepth: 5 [pilon] Confirmed 335 of 447 bases (74.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7422_length_447_cov_8.601227:1-447 [pilon] Processing NODE_6438_length_507_cov_25.544041:1-507 [pilon] NODE_6534_length_501_cov_16.673684:1-501 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 153, Coverage: 13, minDepth: 5 [pilon] Confirmed 349 of 501 bases (69.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6534_length_501_cov_16.673684:1-501 [pilon] Processing NODE_9215_length_357_cov_16.792373:1-357 [pilon] NODE_13245_length_243_cov_20.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13245_length_243_cov_20.680328:1-243 [pilon] Processing NODE_9558_length_344_cov_4.798206:1-344 [pilon] NODE_6382_length_512_cov_0.956522:1-512 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 2 of 512 bases (0.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6382_length_512_cov_0.956522:1-512 [pilon] Processing NODE_12118_length_243_cov_44.418033:1-243 [pilon] NODE_3450_length_791_cov_46.423881:1-791 log: [pilon] frags shovill.bam: coverage 92 [pilon] Total Reads: 676, Coverage: 92, minDepth: 23 [pilon] Confirmed 700 of 791 bases (88.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3450_length_791_cov_46.423881:1-791 [pilon] Processing NODE_9860_length_331_cov_32.690476:1-331 [pilon] NODE_11221_length_275_cov_15.201299:1-275 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 74, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 275 bases (45.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11221_length_275_cov_15.201299:1-275 [pilon] Processing NODE_13046_length_243_cov_22.450820:1-243 [pilon] NODE_13339_length_243_cov_19.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13339_length_243_cov_19.926230:1-243 [pilon] Processing NODE_13951_length_243_cov_14.508197:1-243 [pilon] NODE_14386_length_243_cov_11.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14386_length_243_cov_11.172131:1-243 [pilon] Processing NODE_5996_length_541_cov_1.471429:1-541 [pilon] NODE_6743_length_487_cov_3.158470:1-487 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 26, Coverage: 7, minDepth: 5 [pilon] Confirmed 235 of 487 bases (48.25%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6743_length_487_cov_3.158470:1-487 [pilon] Processing NODE_11084_length_280_cov_7.987421:1-280 [pilon] NODE_12664_length_243_cov_26.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12664_length_243_cov_26.631148:1-243 [pilon] Processing NODE_834_length_1610_cov_3.986568:1-1610 [pilon] NODE_11630_length_258_cov_22.729927:1-258 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 57, Coverage: 5, minDepth: 5 [pilon] Confirmed 162 of 258 bases (62.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11630_length_258_cov_22.729927:1-258 [pilon] Processing NODE_13712_length_243_cov_16.319672:1-243 [pilon] NODE_4380_length_673_cov_13.077899:1-673 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 137, Coverage: 18, minDepth: 5 [pilon] Confirmed 452 of 673 bases (67.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4380_length_673_cov_13.077899:1-673 [pilon] Processing NODE_2403_length_990_cov_14.084005:1-990 [pilon] NODE_4142_length_699_cov_34.700692:1-699 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 414, Coverage: 47, minDepth: 12 [pilon] Confirmed 519 of 699 bases (74.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4142_length_699_cov_34.700692:1-699 [pilon] Processing NODE_8287_length_405_cov_12.630282:1-405 [pilon] NODE_7421_length_447_cov_10.687117:1-447 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 69, Coverage: 12, minDepth: 5 [pilon] Confirmed 311 of 447 bases (69.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7421_length_447_cov_10.687117:1-447 [pilon] Processing NODE_8724_length_381_cov_15.784615:1-381 [pilon] NODE_1012_length_1489_cov_3.772661:1-1489 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 138, Coverage: 11, minDepth: 5 [pilon] Confirmed 1331 of 1489 bases (89.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1012_length_1489_cov_3.772661:1-1489 [pilon] Processing NODE_4636_length_649_cov_1.861742:1-649 [pilon] NODE_10020_length_324_cov_23.975369:1-324 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 74, Coverage: 7, minDepth: 5 [pilon] Confirmed 161 of 324 bases (49.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10020_length_324_cov_23.975369:1-324 [pilon] Processing NODE_5330_length_590_cov_25.488273:1-590 [pilon] NODE_550_length_1858_cov_2.918250:1-1858 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 134, Coverage: 9, minDepth: 5 [pilon] Confirmed 1351 of 1858 bases (72.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_550_length_1858_cov_2.918250:1-1858 [pilon] Processing NODE_3630_length_764_cov_8.528771:1-764 [pilon] NODE_6954_length_474_cov_13.555241:1-474 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 103, Coverage: 22, minDepth: 6 [pilon] Confirmed 378 of 474 bases (79.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6954_length_474_cov_13.555241:1-474 [pilon] Processing NODE_13548_length_243_cov_17.934426:1-243 [pilon] NODE_7535_length_441_cov_23.915625:1-441 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 192, Coverage: 13, minDepth: 5 [pilon] Confirmed 206 of 441 bases (46.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7535_length_441_cov_23.915625:1-441 [pilon] Processing NODE_1386_length_1302_cov_4.461473:1-1302 [pilon] NODE_11365_length_269_cov_12.601351:1-269 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 41, Coverage: 3, minDepth: 5 [pilon] Confirmed 27 of 269 bases (10.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11365_length_269_cov_12.601351:1-269 [pilon] Processing NODE_9609_length_342_cov_5.524887:1-342 [pilon] NODE_4849_length_631_cov_1.737255:1-631 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 38, Coverage: 8, minDepth: 5 [pilon] Confirmed 472 of 631 bases (74.80%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4849_length_631_cov_1.737255:1-631 [pilon] Processing NODE_6285_length_519_cov_0.829146:1-519 [pilon] NODE_3690_length_756_cov_10.272441:1-756 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 165, Coverage: 10, minDepth: 5 [pilon] Confirmed 415 of 756 bases (54.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3690_length_756_cov_10.272441:1-756 [pilon] Processing NODE_4477_length_664_cov_0.749540:1-664 [pilon] NODE_3585_length_771_cov_16.924615:1-771 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 251, Coverage: 26, minDepth: 7 [pilon] Confirmed 547 of 771 bases (70.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3585_length_771_cov_16.924615:1-771 [pilon] Processing NODE_8889_length_372_cov_24.011952:1-372 [pilon] NODE_2538_length_959_cov_29.176611:1-959 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 655, Coverage: 43, minDepth: 11 [pilon] Confirmed 852 of 959 bases (88.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2538_length_959_cov_29.176611:1-959 [pilon] Processing NODE_14798_length_243_cov_7.721311:1-243 [pilon] NODE_4170_length_697_cov_2.090278:1-697 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 440 of 697 bases (63.13%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4170_length_697_cov_2.090278:1-697 [pilon] Processing NODE_12520_length_243_cov_28.795082:1-243 [pilon] NODE_2324_length_1005_cov_20.830317:1-1005 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 506, Coverage: 33, minDepth: 8 [pilon] Confirmed 836 of 1005 bases (83.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2324_length_1005_cov_20.830317:1-1005 [pilon] Processing NODE_5203_length_601_cov_17.795833:1-601 [pilon] NODE_6438_length_507_cov_25.544041:1-507 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 225, Coverage: 42, minDepth: 11 [pilon] Confirmed 410 of 507 bases (80.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6438_length_507_cov_25.544041:1-507 [pilon] Processing NODE_38_length_4067_cov_5.687532:1-4067 [pilon] NODE_10891_length_288_cov_24.209581:1-288 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 86, Coverage: 7, minDepth: 5 [pilon] Confirmed 154 of 288 bases (53.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10891_length_288_cov_24.209581:1-288 [pilon] Processing NODE_12364_length_243_cov_31.778689:1-243 [pilon] NODE_1648_length_1200_cov_36.744208:1-1200 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 943, Coverage: 77, minDepth: 19 [pilon] Confirmed 1090 of 1200 bases (90.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1648_length_1200_cov_36.744208:1-1200 [pilon] Processing NODE_11124_length_279_cov_11.924051:1-279 [pilon] NODE_14224_length_243_cov_12.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14224_length_243_cov_12.385246:1-243 [pilon] NODE_12118_length_243_cov_44.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12118_length_243_cov_44.418033:1-243 [pilon] Processing NODE_8247_length_406_cov_43.719298:1-406 [pilon] Processing NODE_1854_length_1127_cov_24.256461:1-1127 [pilon] NODE_9215_length_357_cov_16.792373:1-357 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 93, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 357 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9215_length_357_cov_16.792373:1-357 [pilon] Processing NODE_458_length_1966_cov_1.794038:1-1966 [pilon] NODE_9558_length_344_cov_4.798206:1-344 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 129 of 344 bases (37.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9558_length_344_cov_4.798206:1-344 [pilon] Processing NODE_10702_length_297_cov_26.738636:1-297 [pilon] NODE_13951_length_243_cov_14.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13951_length_243_cov_14.508197:1-243 [pilon] Processing NODE_5819_length_554_cov_4.265589:1-554 [pilon] NODE_9860_length_331_cov_32.690476:1-331 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 140, Coverage: 27, minDepth: 7 [pilon] Confirmed 281 of 331 bases (84.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9860_length_331_cov_32.690476:1-331 [pilon] Processing NODE_13603_length_243_cov_17.467213:1-243 [pilon] NODE_5996_length_541_cov_1.471429:1-541 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 17, Coverage: 3, minDepth: 5 [pilon] Confirmed 162 of 541 bases (29.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5996_length_541_cov_1.471429:1-541 [pilon] Processing NODE_9439_length_348_cov_21.920705:1-348 [pilon] NODE_8724_length_381_cov_15.784615:1-381 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 97, Coverage: 4, minDepth: 5 [pilon] Confirmed 161 of 381 bases (42.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8724_length_381_cov_15.784615:1-381 [pilon] Processing NODE_11357_length_270_cov_8.785235:1-270 [pilon] NODE_13046_length_243_cov_22.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13046_length_243_cov_22.450820:1-243 [pilon] Processing NODE_12444_length_243_cov_30.073770:1-243 [pilon] NODE_11084_length_280_cov_7.987421:1-280 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 29, Coverage: 2, minDepth: 5 [pilon] Confirmed 21 of 280 bases (7.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11084_length_280_cov_7.987421:1-280 [pilon] Processing NODE_5872_length_550_cov_0.585082:1-550 [pilon] NODE_13712_length_243_cov_16.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13712_length_243_cov_16.319672:1-243 [pilon] Processing NODE_13726_length_243_cov_16.213115:1-243 [pilon] NODE_834_length_1610_cov_3.986568:1-1610 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 145, Coverage: 11, minDepth: 5 [pilon] Confirmed 1191 of 1610 bases (73.98%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_834_length_1610_cov_3.986568:1-1610 [pilon] Processing NODE_6937_length_475_cov_19.858757:1-475 [pilon] NODE_13548_length_243_cov_17.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13548_length_243_cov_17.934426:1-243 [pilon] Processing NODE_412_length_2029_cov_27.388889:1-2029 [pilon] NODE_8287_length_405_cov_12.630282:1-405 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 88, Coverage: 10, minDepth: 5 [pilon] Confirmed 313 of 405 bases (77.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8287_length_405_cov_12.630282:1-405 [pilon] Processing NODE_5584_length_572_cov_1.694013:1-572 [pilon] NODE_4636_length_649_cov_1.861742:1-649 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 31, Coverage: 6, minDepth: 5 [pilon] Confirmed 446 of 649 bases (68.72%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4636_length_649_cov_1.861742:1-649 [pilon] Processing NODE_6815_length_482_cov_14.249307:1-482 [pilon] NODE_3630_length_764_cov_8.528771:1-764 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 144, Coverage: 19, minDepth: 5 [pilon] Confirmed 592 of 764 bases (77.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3630_length_764_cov_8.528771:1-764 [pilon] Processing NODE_14145_length_243_cov_13.172131:1-243 [pilon] NODE_2403_length_990_cov_14.084005:1-990 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 309, Coverage: 26, minDepth: 7 [pilon] Confirmed 862 of 990 bases (87.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2403_length_990_cov_14.084005:1-990 [pilon] Processing NODE_11409_length_267_cov_16.349315:1-267 [pilon] NODE_5330_length_590_cov_25.488273:1-590 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 259, Coverage: 32, minDepth: 8 [pilon] Confirmed 428 of 590 bases (72.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5330_length_590_cov_25.488273:1-590 [pilon] Processing NODE_12792_length_243_cov_25.065574:1-243 [pilon] NODE_12520_length_243_cov_28.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12520_length_243_cov_28.795082:1-243 [pilon] Processing NODE_2734_length_921_cov_21.970000:1-921 [pilon] NODE_10702_length_297_cov_26.738636:1-297 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 116, Coverage: 9, minDepth: 5 [pilon] Confirmed 228 of 297 bases (76.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10702_length_297_cov_26.738636:1-297 [pilon] Processing NODE_13750_length_243_cov_16.049180:1-243 [pilon] NODE_1386_length_1302_cov_4.461473:1-1302 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 125, Coverage: 12, minDepth: 5 [pilon] Confirmed 858 of 1302 bases (65.90%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1386_length_1302_cov_4.461473:1-1302 [pilon] Processing NODE_1718_length_1174_cov_32.245964:1-1174 [pilon] NODE_9609_length_342_cov_5.524887:1-342 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 229 of 342 bases (66.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9609_length_342_cov_5.524887:1-342 [pilon] Processing NODE_9871_length_330_cov_36.851675:1-330 [pilon] NODE_8889_length_372_cov_24.011952:1-372 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 149, Coverage: 26, minDepth: 7 [pilon] Confirmed 292 of 372 bases (78.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8889_length_372_cov_24.011952:1-372 [pilon] Processing NODE_8361_length_402_cov_17.156584:1-402 [pilon] NODE_6285_length_519_cov_0.829146:1-519 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 17, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 519 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6285_length_519_cov_0.829146:1-519 [pilon] Processing NODE_12475_length_243_cov_29.549180:1-243 [pilon] NODE_4477_length_664_cov_0.749540:1-664 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 138 of 664 bases (20.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4477_length_664_cov_0.749540:1-664 [pilon] Processing NODE_3286_length_817_cov_7.708333:1-817 [pilon] NODE_14798_length_243_cov_7.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14798_length_243_cov_7.721311:1-243 [pilon] Processing NODE_661_length_1736_cov_16.328793:1-1736 [pilon] NODE_12364_length_243_cov_31.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12364_length_243_cov_31.778689:1-243 [pilon] Processing NODE_7909_length_422_cov_61.425249:1-422 [pilon] NODE_11124_length_279_cov_11.924051:1-279 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11124_length_279_cov_11.924051:1-279 [pilon] Processing NODE_9806_length_333_cov_41.377358:1-333 [pilon] NODE_8247_length_406_cov_43.719298:1-406 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 268, Coverage: 54, minDepth: 14 [pilon] Confirmed 355 of 406 bases (87.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8247_length_406_cov_43.719298:1-406 [pilon] Processing NODE_5517_length_576_cov_12.371429:1-576 [pilon] NODE_5203_length_601_cov_17.795833:1-601 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 275, Coverage: 27, minDepth: 7 [pilon] Confirmed 344 of 601 bases (57.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5203_length_601_cov_17.795833:1-601 [pilon] Processing NODE_307_length_2233_cov_12.235795:1-2233 [pilon] NODE_1854_length_1127_cov_24.256461:1-1127 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 538, Coverage: 56, minDepth: 14 [pilon] Confirmed 680 of 1127 bases (60.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1854_length_1127_cov_24.256461:1-1127 [pilon] Processing NODE_5336_length_590_cov_7.537313:1-590 [pilon] NODE_38_length_4067_cov_5.687532:1-4067 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 539, Coverage: 17, minDepth: 5 [pilon] Confirmed 3889 of 4067 bases (95.62%) [pilon] Corrected 7 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_38_length_4067_cov_5.687532:1-4067 [pilon] Processing NODE_4823_length_633_cov_0.699219:1-633 [pilon] NODE_458_length_1966_cov_1.794038:1-1966 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 112, Coverage: 7, minDepth: 5 [pilon] Confirmed 1358 of 1966 bases (69.07%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_458_length_1966_cov_1.794038:1-1966 [pilon] Processing NODE_2453_length_977_cov_1.475467:1-977 [pilon] NODE_5819_length_554_cov_4.265589:1-554 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 56, Coverage: 12, minDepth: 5 [pilon] Confirmed 480 of 554 bases (86.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5819_length_554_cov_4.265589:1-554 [pilon] Processing NODE_3913_length_726_cov_3.042975:1-726 [pilon] NODE_13603_length_243_cov_17.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13603_length_243_cov_17.467213:1-243 [pilon] Processing NODE_3645_length_762_cov_19.989080:1-762 [pilon] NODE_11357_length_270_cov_8.785235:1-270 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 38, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 270 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11357_length_270_cov_8.785235:1-270 [pilon] Processing NODE_837_length_1608_cov_16.561533:1-1608 [pilon] NODE_11409_length_267_cov_16.349315:1-267 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11409_length_267_cov_16.349315:1-267 [pilon] Processing NODE_10441_length_306_cov_25.140541:1-306 [pilon] NODE_9439_length_348_cov_21.920705:1-348 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 92, Coverage: 4, minDepth: 5 [pilon] Confirmed 150 of 348 bases (43.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9439_length_348_cov_21.920705:1-348 [pilon] Processing NODE_12282_length_243_cov_33.639344:1-243 [pilon] NODE_13750_length_243_cov_16.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13750_length_243_cov_16.049180:1-243 [pilon] Processing NODE_7515_length_442_cov_37.548287:1-442 [pilon] NODE_12444_length_243_cov_30.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12444_length_243_cov_30.073770:1-243 [pilon] Processing NODE_8749_length_380_cov_20.594595:1-380 [pilon] NODE_5872_length_550_cov_0.585082:1-550 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 11, Coverage: 2, minDepth: 5 [pilon] Confirmed 41 of 550 bases (7.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5872_length_550_cov_0.585082:1-550 [pilon] Processing NODE_7472_length_444_cov_22.894737:1-444 [pilon] NODE_2734_length_921_cov_21.970000:1-921 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 403, Coverage: 47, minDepth: 12 [pilon] Confirmed 690 of 921 bases (74.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2734_length_921_cov_21.970000:1-921 [pilon] Processing NODE_4968_length_621_cov_12.066000:1-621 [pilon] NODE_6937_length_475_cov_19.858757:1-475 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 168, Coverage: 25, minDepth: 6 [pilon] Confirmed 416 of 475 bases (87.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6937_length_475_cov_19.858757:1-475 [pilon] Processing NODE_394_length_2058_cov_7.701084:1-2058 [pilon] NODE_13726_length_243_cov_16.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13726_length_243_cov_16.213115:1-243 [pilon] Processing NODE_7708_length_432_cov_15.099678:1-432 [pilon] NODE_14145_length_243_cov_13.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14145_length_243_cov_13.172131:1-243 [pilon] Processing NODE_14400_length_243_cov_11.081967:1-243 [pilon] NODE_5584_length_572_cov_1.694013:1-572 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 314 of 572 bases (54.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5584_length_572_cov_1.694013:1-572 [pilon] NODE_6815_length_482_cov_14.249307:1-482 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 141, Coverage: 3, minDepth: 5 [pilon] Confirmed 236 of 482 bases (48.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6815_length_482_cov_14.249307:1-482 [pilon] Processing NODE_13163_length_243_cov_21.434426:1-243 [pilon] Processing NODE_2653_length_937_cov_2.185049:1-937 [pilon] NODE_412_length_2029_cov_27.388889:1-2029 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 1257, Coverage: 55, minDepth: 14 [pilon] Confirmed 1572 of 2029 bases (77.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_412_length_2029_cov_27.388889:1-2029 [pilon] Processing NODE_7194_length_460_cov_11.867257:1-460 [pilon] NODE_12792_length_243_cov_25.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12792_length_243_cov_25.065574:1-243 [pilon] Processing NODE_452_length_1969_cov_9.143398:1-1969 [pilon] NODE_9871_length_330_cov_36.851675:1-330 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 191, Coverage: 8, minDepth: 5 [pilon] Confirmed 151 of 330 bases (45.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9871_length_330_cov_36.851675:1-330 [pilon] Processing NODE_12164_length_243_cov_38.631148:1-243 [pilon] NODE_8361_length_402_cov_17.156584:1-402 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 100, Coverage: 7, minDepth: 5 [pilon] Confirmed 259 of 402 bases (64.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8361_length_402_cov_17.156584:1-402 [pilon] Processing NODE_5815_length_554_cov_18.702079:1-554 [pilon] NODE_12475_length_243_cov_29.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12475_length_243_cov_29.549180:1-243 [pilon] Processing NODE_2157_length_1043_cov_1.977223:1-1043 [pilon] NODE_1718_length_1174_cov_32.245964:1-1174 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 847, Coverage: 78, minDepth: 20 [pilon] Confirmed 1096 of 1174 bases (93.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1718_length_1174_cov_32.245964:1-1174 [pilon] Processing NODE_2088_length_1062_cov_16.972370:1-1062 [pilon] NODE_3286_length_817_cov_7.708333:1-817 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 169, Coverage: 17, minDepth: 5 [pilon] Confirmed 384 of 817 bases (47.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3286_length_817_cov_7.708333:1-817 [pilon] Processing NODE_12041_length_246_cov_7.592000:1-246 [pilon] NODE_9806_length_333_cov_41.377358:1-333 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 184, Coverage: 38, minDepth: 10 [pilon] Confirmed 296 of 333 bases (88.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9806_length_333_cov_41.377358:1-333 [pilon] Processing NODE_14063_length_243_cov_13.762295:1-243 [pilon] NODE_4823_length_633_cov_0.699219:1-633 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 245 of 633 bases (38.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4823_length_633_cov_0.699219:1-633 [pilon] Processing NODE_10285_length_314_cov_19.834197:1-314 [pilon] NODE_10441_length_306_cov_25.140541:1-306 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 87, Coverage: 6, minDepth: 5 [pilon] Confirmed 167 of 306 bases (54.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10441_length_306_cov_25.140541:1-306 [pilon] Processing NODE_9270_length_354_cov_41.231760:1-354 [pilon] NODE_5517_length_576_cov_12.371429:1-576 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 134, Coverage: 19, minDepth: 5 [pilon] Confirmed 447 of 576 bases (77.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5517_length_576_cov_12.371429:1-576 [pilon] Processing NODE_4955_length_622_cov_3.560878:1-622 [pilon] NODE_661_length_1736_cov_16.328793:1-1736 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 645, Coverage: 31, minDepth: 8 [pilon] Confirmed 1422 of 1736 bases (81.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_661_length_1736_cov_16.328793:1-1736 [pilon] Processing NODE_6286_length_519_cov_0.635678:1-519 [pilon] NODE_7909_length_422_cov_61.425249:1-422 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 422, Coverage: 75, minDepth: 19 [pilon] Confirmed 360 of 422 bases (85.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7909_length_422_cov_61.425249:1-422 [pilon] Processing NODE_6206_length_524_cov_2.486352:1-524 [pilon] NODE_307_length_2233_cov_12.235795:1-2233 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 644, Coverage: 30, minDepth: 8 [pilon] Confirmed 1883 of 2233 bases (84.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_307_length_2233_cov_12.235795:1-2233 [pilon] Processing NODE_3984_length_716_cov_44.673950:1-716 [pilon] NODE_5336_length_590_cov_7.537313:1-590 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 76, Coverage: 16, minDepth: 5 [pilon] Confirmed 484 of 590 bases (82.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5336_length_590_cov_7.537313:1-590 [pilon] Processing NODE_8962_length_368_cov_30.761134:1-368 [pilon] NODE_2453_length_977_cov_1.475467:1-977 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 33, Coverage: 4, minDepth: 5 [pilon] Confirmed 337 of 977 bases (34.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2453_length_977_cov_1.475467:1-977 [pilon] Processing NODE_13963_length_243_cov_14.426230:1-243 [pilon] NODE_7515_length_442_cov_37.548287:1-442 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 257, Coverage: 45, minDepth: 11 [pilon] Confirmed 393 of 442 bases (88.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7515_length_442_cov_37.548287:1-442 [pilon] Processing NODE_1246_length_1367_cov_37.050562:1-1367 [pilon] NODE_4968_length_621_cov_12.066000:1-621 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 130, Coverage: 15, minDepth: 5 [pilon] Confirmed 433 of 621 bases (69.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4968_length_621_cov_12.066000:1-621 [pilon] Processing NODE_11583_length_261_cov_15.392857:1-261 [pilon] NODE_3645_length_762_cov_19.989080:1-762 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 292, Coverage: 41, minDepth: 10 [pilon] Confirmed 494 of 762 bases (64.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3645_length_762_cov_19.989080:1-762 [pilon] Processing NODE_689_length_1711_cov_1.705031:1-1711 [pilon] NODE_3913_length_726_cov_3.042975:1-726 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 410 of 726 bases (56.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3913_length_726_cov_3.042975:1-726 [pilon] Processing NODE_10846_length_290_cov_64.568047:1-290 [pilon] NODE_837_length_1608_cov_16.561533:1-1608 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 666, Coverage: 43, minDepth: 11 [pilon] Confirmed 1554 of 1608 bases (96.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_837_length_1608_cov_16.561533:1-1608 [pilon] Processing NODE_6827_length_481_cov_27.755556:1-481 [pilon] NODE_7472_length_444_cov_22.894737:1-444 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 191, Coverage: 14, minDepth: 5 [pilon] Confirmed 189 of 444 bases (42.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7472_length_444_cov_22.894737:1-444 [pilon] Processing NODE_6262_length_520_cov_23.791980:1-520 [pilon] NODE_8749_length_380_cov_20.594595:1-380 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 109, Coverage: 13, minDepth: 5 [pilon] Confirmed 237 of 380 bases (62.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8749_length_380_cov_20.594595:1-380 [pilon] Processing NODE_9672_length_339_cov_14.573394:1-339 [pilon] NODE_12282_length_243_cov_33.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12282_length_243_cov_33.639344:1-243 [pilon] Processing NODE_14055_length_243_cov_13.795082:1-243 [pilon] NODE_14400_length_243_cov_11.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14400_length_243_cov_11.081967:1-243 [pilon] Processing NODE_6392_length_511_cov_3.700000:1-511 [pilon] NODE_394_length_2058_cov_7.701084:1-2058 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 397, Coverage: 19, minDepth: 5 [pilon] Confirmed 1802 of 2058 bases (87.56%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_394_length_2058_cov_7.701084:1-2058 [pilon] Processing NODE_2613_length_943_cov_2.159367:1-943 [pilon] NODE_13163_length_243_cov_21.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13163_length_243_cov_21.434426:1-243 [pilon] Processing NODE_4761_length_638_cov_35.702128:1-638 [pilon] NODE_7708_length_432_cov_15.099678:1-432 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 113, Coverage: 18, minDepth: 5 [pilon] Confirmed 401 of 432 bases (92.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7708_length_432_cov_15.099678:1-432 [pilon] Processing NODE_13896_length_243_cov_14.950820:1-243 [pilon] NODE_2653_length_937_cov_2.185049:1-937 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 50, Coverage: 7, minDepth: 5 [pilon] Confirmed 580 of 937 bases (61.90%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2653_length_937_cov_2.185049:1-937 [pilon] Processing NODE_14686_length_243_cov_8.704918:1-243 [pilon] NODE_7194_length_460_cov_11.867257:1-460 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 99, Coverage: 12, minDepth: 5 [pilon] Confirmed 379 of 460 bases (82.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7194_length_460_cov_11.867257:1-460 [pilon] Processing NODE_2852_length_901_cov_20.351282:1-901 [pilon] NODE_5815_length_554_cov_18.702079:1-554 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 184, Coverage: 28, minDepth: 7 [pilon] Confirmed 489 of 554 bases (88.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5815_length_554_cov_18.702079:1-554 [pilon] Processing NODE_11186_length_276_cov_18.438710:1-276 [pilon] NODE_12164_length_243_cov_38.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12164_length_243_cov_38.631148:1-243 [pilon] Processing NODE_13825_length_243_cov_15.442623:1-243 [pilon] NODE_452_length_1969_cov_9.143398:1-1969 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 454, Coverage: 25, minDepth: 6 [pilon] Confirmed 1804 of 1969 bases (91.62%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_452_length_1969_cov_9.143398:1-1969 [pilon] Processing NODE_5191_length_602_cov_38.546778:1-602 [pilon] NODE_2157_length_1043_cov_1.977223:1-1043 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 62, Coverage: 8, minDepth: 5 [pilon] Confirmed 610 of 1043 bases (58.49%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2157_length_1043_cov_1.977223:1-1043 [pilon] Processing NODE_7663_length_434_cov_59.309904:1-434 [pilon] NODE_2088_length_1062_cov_16.972370:1-1062 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 361, Coverage: 30, minDepth: 8 [pilon] Confirmed 863 of 1062 bases (81.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2088_length_1062_cov_16.972370:1-1062 [pilon] Processing NODE_8091_length_414_cov_8.467577:1-414 [pilon] NODE_11583_length_261_cov_15.392857:1-261 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 40, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11583_length_261_cov_15.392857:1-261 [pilon] Processing NODE_10371_length_310_cov_2.687831:1-310 [pilon] NODE_9270_length_354_cov_41.231760:1-354 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 224, Coverage: 34, minDepth: 9 [pilon] Confirmed 303 of 354 bases (85.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9270_length_354_cov_41.231760:1-354 [pilon] Processing NODE_4685_length_645_cov_1.097328:1-645 [pilon] NODE_12041_length_246_cov_7.592000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 23, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12041_length_246_cov_7.592000:1-246 [pilon] Processing NODE_3038_length_866_cov_33.148993:1-866 [pilon] NODE_6286_length_519_cov_0.635678:1-519 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 16 of 519 bases (3.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6286_length_519_cov_0.635678:1-519 [pilon] Processing NODE_5542_length_574_cov_18.743929:1-574 [pilon] NODE_14063_length_243_cov_13.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14063_length_243_cov_13.762295:1-243 [pilon] Processing NODE_12585_length_243_cov_27.688525:1-243 [pilon] NODE_10285_length_314_cov_19.834197:1-314 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 76, Coverage: 5, minDepth: 5 [pilon] Confirmed 133 of 314 bases (42.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10285_length_314_cov_19.834197:1-314 [pilon] Processing NODE_9709_length_338_cov_6.474654:1-338 [pilon] NODE_6206_length_524_cov_2.486352:1-524 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 31, Coverage: 7, minDepth: 5 [pilon] Confirmed 291 of 524 bases (55.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6206_length_524_cov_2.486352:1-524 [pilon] Processing NODE_14785_length_243_cov_7.827869:1-243 [pilon] NODE_13963_length_243_cov_14.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13963_length_243_cov_14.426230:1-243 [pilon] Processing NODE_1442_length_1284_cov_0.950989:1-1284 [pilon] NODE_4955_length_622_cov_3.560878:1-622 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 55, Coverage: 11, minDepth: 5 [pilon] Confirmed 515 of 622 bases (82.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4955_length_622_cov_3.560878:1-622 [pilon] Processing NODE_3213_length_831_cov_17.946479:1-831 [pilon] NODE_1246_length_1367_cov_37.050562:1-1367 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 1146, Coverage: 91, minDepth: 23 [pilon] Confirmed 1045 of 1367 bases (76.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1246_length_1367_cov_37.050562:1-1367 [pilon] Processing NODE_10852_length_290_cov_25.396450:1-290 [pilon] NODE_3984_length_716_cov_44.673950:1-716 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 618, Coverage: 81, minDepth: 20 [pilon] Confirmed 632 of 716 bases (88.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3984_length_716_cov_44.673950:1-716 [pilon] Processing NODE_14104_length_243_cov_13.434426:1-243 [pilon] NODE_8962_length_368_cov_30.761134:1-368 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 172, Coverage: 17, minDepth: 5 [pilon] Confirmed 269 of 368 bases (73.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8962_length_368_cov_30.761134:1-368 [pilon] Processing NODE_8434_length_398_cov_12.516245:1-398 [pilon] NODE_689_length_1711_cov_1.705031:1-1711 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 79, Coverage: 6, minDepth: 5 [pilon] Confirmed 935 of 1711 bases (54.65%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_689_length_1711_cov_1.705031:1-1711 [pilon] Processing NODE_4914_length_625_cov_1.638889:1-625 [pilon] NODE_6827_length_481_cov_27.755556:1-481 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 239, Coverage: 26, minDepth: 7 [pilon] Confirmed 332 of 481 bases (69.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6827_length_481_cov_27.755556:1-481 [pilon] Processing NODE_13429_length_243_cov_19.024590:1-243 [pilon] NODE_14686_length_243_cov_8.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14686_length_243_cov_8.704918:1-243 [pilon] Processing NODE_14608_length_243_cov_9.319672:1-243 [pilon] NODE_10846_length_290_cov_64.568047:1-290 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 247, Coverage: 21, minDepth: 5 [pilon] Confirmed 264 of 290 bases (91.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10846_length_290_cov_64.568047:1-290 [pilon] Processing NODE_12612_length_243_cov_27.434426:1-243 [pilon] NODE_14055_length_243_cov_13.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14055_length_243_cov_13.795082:1-243 [pilon] Processing NODE_1596_length_1219_cov_1.091985:1-1219 [pilon] NODE_6262_length_520_cov_23.791980:1-520 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 209, Coverage: 41, minDepth: 10 [pilon] Confirmed 413 of 520 bases (79.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6262_length_520_cov_23.791980:1-520 [pilon] Processing NODE_11181_length_276_cov_21.529032:1-276 [pilon] NODE_6392_length_511_cov_3.700000:1-511 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 34, Coverage: 8, minDepth: 5 [pilon] Confirmed 312 of 511 bases (61.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6392_length_511_cov_3.700000:1-511 [pilon] Processing NODE_2329_length_1004_cov_39.768969:1-1004 [pilon] NODE_2613_length_943_cov_2.159367:1-943 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 53, Coverage: 7, minDepth: 5 [pilon] Confirmed 550 of 943 bases (58.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2613_length_943_cov_2.159367:1-943 [pilon] Processing NODE_11874_length_250_cov_6.217054:1-250 [pilon] NODE_13896_length_243_cov_14.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13896_length_243_cov_14.950820:1-243 [pilon] Processing NODE_4070_length_708_cov_21.017036:1-708 [pilon] NODE_11186_length_276_cov_18.438710:1-276 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 53, Coverage: 4, minDepth: 5 [pilon] Confirmed 126 of 276 bases (45.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11186_length_276_cov_18.438710:1-276 [pilon] Processing NODE_14774_length_243_cov_7.959016:1-243 [pilon] NODE_9672_length_339_cov_14.573394:1-339 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 68, Coverage: 5, minDepth: 5 [pilon] Confirmed 156 of 339 bases (46.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9672_length_339_cov_14.573394:1-339 [pilon] Processing NODE_14733_length_243_cov_8.295082:1-243 [pilon] NODE_2852_length_901_cov_20.351282:1-901 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 391, Coverage: 36, minDepth: 9 [pilon] Confirmed 845 of 901 bases (93.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2852_length_901_cov_20.351282:1-901 [pilon] Processing NODE_12047_length_246_cov_6.616000:1-246 [pilon] NODE_4761_length_638_cov_35.702128:1-638 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 440, Coverage: 69, minDepth: 17 [pilon] Confirmed 464 of 638 bases (72.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4761_length_638_cov_35.702128:1-638 [pilon] Processing NODE_7273_length_456_cov_10.674627:1-456 [pilon] NODE_13825_length_243_cov_15.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13825_length_243_cov_15.442623:1-243 [pilon] Processing NODE_10338_length_312_cov_13.670157:1-312 [pilon] NODE_10371_length_310_cov_2.687831:1-310 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 27, Coverage: 4, minDepth: 5 [pilon] Confirmed 136 of 310 bases (43.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10371_length_310_cov_2.687831:1-310 [pilon] Processing NODE_1924_length_1106_cov_4.759391:1-1106 [pilon] NODE_5191_length_602_cov_38.546778:1-602 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 435, Coverage: 53, minDepth: 13 [pilon] Confirmed 542 of 602 bases (90.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5191_length_602_cov_38.546778:1-602 [pilon] Processing NODE_5983_length_542_cov_28.693587:1-542 [pilon] NODE_8091_length_414_cov_8.467577:1-414 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 46, Coverage: 3, minDepth: 5 [pilon] Confirmed 139 of 414 bases (33.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8091_length_414_cov_8.467577:1-414 [pilon] Processing NODE_9727_length_336_cov_36.334884:1-336 [pilon] NODE_7663_length_434_cov_59.309904:1-434 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 435, Coverage: 77, minDepth: 19 [pilon] Confirmed 384 of 434 bases (88.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7663_length_434_cov_59.309904:1-434 [pilon] Processing NODE_12542_length_243_cov_28.434426:1-243 [pilon] NODE_14104_length_243_cov_13.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14104_length_243_cov_13.434426:1-243 [pilon] Processing NODE_11270_length_273_cov_14.559211:1-273 [pilon] NODE_4685_length_645_cov_1.097328:1-645 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 251 of 645 bases (38.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4685_length_645_cov_1.097328:1-645 [pilon] Processing NODE_2034_length_1077_cov_20.535565:1-1077 [pilon] NODE_13429_length_243_cov_19.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13429_length_243_cov_19.024590:1-243 [pilon] Processing NODE_13261_length_243_cov_20.516393:1-243 [pilon] NODE_9709_length_338_cov_6.474654:1-338 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 338 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9709_length_338_cov_6.474654:1-338 [pilon] Processing NODE_6015_length_539_cov_62.255981:1-539 [pilon] NODE_14608_length_243_cov_9.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14608_length_243_cov_9.319672:1-243 [pilon] Processing NODE_12488_length_243_cov_29.319672:1-243 [pilon] NODE_3038_length_866_cov_33.148993:1-866 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 615, Coverage: 59, minDepth: 15 [pilon] Confirmed 700 of 866 bases (80.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3038_length_866_cov_33.148993:1-866 [pilon] Processing NODE_1492_length_1263_cov_30.668126:1-1263 [pilon] NODE_1442_length_1284_cov_0.950989:1-1284 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 40, Coverage: 4, minDepth: 5 [pilon] Confirmed 374 of 1284 bases (29.13%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1442_length_1284_cov_0.950989:1-1284 [pilon] Processing NODE_4750_length_639_cov_19.160232:1-639 [pilon] NODE_10852_length_290_cov_25.396450:1-290 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 96, Coverage: 13, minDepth: 5 [pilon] Confirmed 231 of 290 bases (79.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10852_length_290_cov_25.396450:1-290 [pilon] Processing NODE_14629_length_243_cov_9.221311:1-243 [pilon] NODE_5542_length_574_cov_18.743929:1-574 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 193, Coverage: 23, minDepth: 6 [pilon] Confirmed 381 of 574 bases (66.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5542_length_574_cov_18.743929:1-574 [pilon] Processing NODE_6242_length_522_cov_0.533666:1-522 [pilon] NODE_12585_length_243_cov_27.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12585_length_243_cov_27.688525:1-243 [pilon] Processing NODE_5629_length_568_cov_21.581655:1-568 [pilon] NODE_14785_length_243_cov_7.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14785_length_243_cov_7.827869:1-243 [pilon] Processing NODE_12109_length_243_cov_46.721311:1-243 [pilon] NODE_3213_length_831_cov_17.946479:1-831 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 291, Coverage: 31, minDepth: 8 [pilon] Confirmed 715 of 831 bases (86.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3213_length_831_cov_17.946479:1-831 [pilon] Processing NODE_13097_length_243_cov_22.000000:1-243 [pilon] NODE_8434_length_398_cov_12.516245:1-398 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 74, Coverage: 11, minDepth: 5 [pilon] Confirmed 267 of 398 bases (67.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8434_length_398_cov_12.516245:1-398 [pilon] Processing NODE_8618_length_387_cov_22.203008:1-387 [pilon] NODE_4914_length_625_cov_1.638889:1-625 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 341 of 625 bases (54.56%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4914_length_625_cov_1.638889:1-625 [pilon] Processing NODE_12185_length_243_cov_37.278689:1-243 [pilon] NODE_12612_length_243_cov_27.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12612_length_243_cov_27.434426:1-243 [pilon] Processing NODE_13982_length_243_cov_14.270492:1-243 [pilon] NODE_1596_length_1219_cov_1.091985:1-1219 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 43, Coverage: 4, minDepth: 5 [pilon] Confirmed 408 of 1219 bases (33.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1596_length_1219_cov_1.091985:1-1219 [pilon] Processing NODE_12223_length_243_cov_35.532787:1-243 [pilon] NODE_11181_length_276_cov_21.529032:1-276 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 71, Coverage: 11, minDepth: 5 [pilon] Confirmed 228 of 276 bases (82.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11181_length_276_cov_21.529032:1-276 [pilon] Processing NODE_2856_length_900_cov_22.238768:1-900 [pilon] NODE_11874_length_250_cov_6.217054:1-250 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 16, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 250 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11874_length_250_cov_6.217054:1-250 [pilon] Processing NODE_3897_length_728_cov_17.672158:1-728 [pilon] NODE_11270_length_273_cov_14.559211:1-273 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 52, Coverage: 9, minDepth: 5 [pilon] Confirmed 185 of 273 bases (67.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11270_length_273_cov_14.559211:1-273 [pilon] Processing NODE_11261_length_273_cov_18.473684:1-273 [pilon] NODE_14774_length_243_cov_7.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14774_length_243_cov_7.959016:1-243 [pilon] Processing NODE_7785_length_428_cov_33.250814:1-428 [pilon] NODE_4070_length_708_cov_21.017036:1-708 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 274, Coverage: 29, minDepth: 7 [pilon] Confirmed 599 of 708 bases (84.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4070_length_708_cov_21.017036:1-708 [pilon] Processing NODE_13188_length_243_cov_21.188525:1-243 [pilon] NODE_2329_length_1004_cov_39.768969:1-1004 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 830, Coverage: 72, minDepth: 18 [pilon] Confirmed 827 of 1004 bases (82.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2329_length_1004_cov_39.768969:1-1004 [pilon] Processing NODE_6953_length_474_cov_13.575071:1-474 [pilon] NODE_14733_length_243_cov_8.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14733_length_243_cov_8.295082:1-243 [pilon] Processing NODE_2609_length_944_cov_1.284326:1-944 [pilon] NODE_12047_length_246_cov_6.616000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 21, Coverage: 3, minDepth: 5 [pilon] Confirmed 68 of 246 bases (27.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12047_length_246_cov_6.616000:1-246 [pilon] Processing NODE_4219_length_691_cov_57.068421:1-691 [pilon] NODE_7273_length_456_cov_10.674627:1-456 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 71, Coverage: 13, minDepth: 5 [pilon] Confirmed 343 of 456 bases (75.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7273_length_456_cov_10.674627:1-456 [pilon] Processing NODE_15134_length_200_cov_2.240506:1-200 [pilon] NODE_10338_length_312_cov_13.670157:1-312 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 237 of 312 bases (75.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10338_length_312_cov_13.670157:1-312 [pilon] Processing NODE_6604_length_497_cov_4.768617:1-497 [pilon] NODE_13261_length_243_cov_20.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13261_length_243_cov_20.516393:1-243 [pilon] Processing NODE_10029_length_324_cov_18.078818:1-324 [pilon] NODE_12488_length_243_cov_29.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12488_length_243_cov_29.319672:1-243 [pilon] Processing NODE_5368_length_587_cov_1.757511:1-587 [pilon] NODE_9727_length_336_cov_36.334884:1-336 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 184, Coverage: 20, minDepth: 5 [pilon] Confirmed 300 of 336 bases (89.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9727_length_336_cov_36.334884:1-336 [pilon] Processing NODE_11313_length_270_cov_36.651007:1-270 [pilon] NODE_1924_length_1106_cov_4.759391:1-1106 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 143, Coverage: 11, minDepth: 5 [pilon] Confirmed 907 of 1106 bases (82.01%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1924_length_1106_cov_4.759391:1-1106 [pilon] Processing NODE_12593_length_243_cov_27.655738:1-243 [pilon] NODE_12542_length_243_cov_28.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12542_length_243_cov_28.434426:1-243 [pilon] Processing NODE_14688_length_243_cov_8.680328:1-243 [pilon] NODE_5983_length_542_cov_28.693587:1-542 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 313, Coverage: 33, minDepth: 8 [pilon] Confirmed 298 of 542 bases (54.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5983_length_542_cov_28.693587:1-542 [pilon] Processing NODE_6688_length_491_cov_18.443243:1-491 [pilon] NODE_2034_length_1077_cov_20.535565:1-1077 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 386, Coverage: 36, minDepth: 9 [pilon] Confirmed 945 of 1077 bases (87.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2034_length_1077_cov_20.535565:1-1077 [pilon] Processing NODE_3328_length_810_cov_31.859216:1-810 [pilon] NODE_6242_length_522_cov_0.533666:1-522 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 54 of 522 bases (10.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6242_length_522_cov_0.533666:1-522 [pilon] Processing NODE_11645_length_258_cov_16.525547:1-258 [pilon] NODE_6015_length_539_cov_62.255981:1-539 log: [pilon] frags shovill.bam: coverage 105 [pilon] Total Reads: 617, Coverage: 105, minDepth: 26 [pilon] Confirmed 460 of 539 bases (85.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6015_length_539_cov_62.255981:1-539 [pilon] Processing NODE_6278_length_519_cov_17.640704:1-519 [pilon] NODE_14629_length_243_cov_9.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14629_length_243_cov_9.221311:1-243 [pilon] Processing NODE_3787_length_742_cov_17.199678:1-742 [pilon] NODE_4750_length_639_cov_19.160232:1-639 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 232, Coverage: 25, minDepth: 6 [pilon] Confirmed 401 of 639 bases (62.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4750_length_639_cov_19.160232:1-639 [pilon] Processing NODE_5708_length_563_cov_2.592760:1-563 [pilon] NODE_1492_length_1263_cov_30.668126:1-1263 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 820, Coverage: 73, minDepth: 18 [pilon] Confirmed 1097 of 1263 bases (86.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1492_length_1263_cov_30.668126:1-1263 [pilon] Processing NODE_13232_length_243_cov_20.811475:1-243 [pilon] NODE_5629_length_568_cov_21.581655:1-568 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 251, Coverage: 36, minDepth: 9 [pilon] Confirmed 468 of 568 bases (82.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5629_length_568_cov_21.581655:1-568 [pilon] Processing NODE_5972_length_543_cov_17.191943:1-543 [pilon] NODE_12109_length_243_cov_46.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12109_length_243_cov_46.721311:1-243 [pilon] NODE_13097_length_243_cov_22.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13097_length_243_cov_22.000000:1-243 [pilon] Processing NODE_10607_length_300_cov_27.156425:1-300 [pilon] Processing NODE_12539_length_243_cov_28.459016:1-243 [pilon] NODE_8618_length_387_cov_22.203008:1-387 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 118, Coverage: 16, minDepth: 5 [pilon] Confirmed 258 of 387 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8618_length_387_cov_22.203008:1-387 [pilon] Processing NODE_8499_length_394_cov_13.238095:1-394 [pilon] NODE_11261_length_273_cov_18.473684:1-273 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 59, Coverage: 5, minDepth: 5 [pilon] Confirmed 202 of 273 bases (73.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11261_length_273_cov_18.473684:1-273 [pilon] Processing NODE_4791_length_636_cov_0.524272:1-636 [pilon] NODE_13982_length_243_cov_14.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13982_length_243_cov_14.270492:1-243 [pilon] Processing NODE_9314_length_354_cov_8.433476:1-354 [pilon] NODE_12185_length_243_cov_37.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12185_length_243_cov_37.278689:1-243 [pilon] Processing NODE_9813_length_333_cov_25.509434:1-333 [pilon] NODE_12223_length_243_cov_35.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12223_length_243_cov_35.532787:1-243 [pilon] NODE_10029_length_324_cov_18.078818:1-324 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 75, Coverage: 9, minDepth: 5 [pilon] Confirmed 219 of 324 bases (67.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10029_length_324_cov_18.078818:1-324 [pilon] NODE_5368_length_587_cov_1.757511:1-587 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 25, Coverage: 6, minDepth: 5 [pilon] Confirmed 364 of 587 bases (62.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5368_length_587_cov_1.757511:1-587 [pilon] Processing NODE_1286_length_1346_cov_39.636735:1-1346 [pilon] Processing NODE_4365_length_674_cov_25.801085:1-674 [pilon] Processing NODE_9617_length_341_cov_38.754545:1-341 [pilon] NODE_2856_length_900_cov_22.238768:1-900 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 397, Coverage: 36, minDepth: 9 [pilon] Confirmed 705 of 900 bases (78.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2856_length_900_cov_22.238768:1-900 [pilon] NODE_6953_length_474_cov_13.575071:1-474 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 119, Coverage: 17, minDepth: 5 [pilon] Confirmed 323 of 474 bases (68.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6953_length_474_cov_13.575071:1-474 [pilon] Processing NODE_5033_length_616_cov_28.886869:1-616 [pilon] Processing NODE_2776_length_913_cov_29.978535:1-913 [pilon] NODE_3897_length_728_cov_17.672158:1-728 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 236, Coverage: 30, minDepth: 8 [pilon] Confirmed 505 of 728 bases (69.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3897_length_728_cov_17.672158:1-728 [pilon] Processing NODE_13751_length_243_cov_16.049180:1-243 [pilon] NODE_6604_length_497_cov_4.768617:1-497 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 58, Coverage: 14, minDepth: 5 [pilon] Confirmed 424 of 497 bases (85.31%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6604_length_497_cov_4.768617:1-497 [pilon] Processing NODE_3017_length_870_cov_15.626168:1-870 [pilon] NODE_13188_length_243_cov_21.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13188_length_243_cov_21.188525:1-243 [pilon] Processing NODE_265_length_2299_cov_33.646465:1-2299 [pilon] NODE_15134_length_200_cov_2.240506:1-200 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 5, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 200 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15134_length_200_cov_2.240506:1-200 [pilon] Processing NODE_12470_length_243_cov_29.614754:1-243 [pilon] NODE_7785_length_428_cov_33.250814:1-428 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 227, Coverage: 44, minDepth: 11 [pilon] Confirmed 360 of 428 bases (84.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7785_length_428_cov_33.250814:1-428 [pilon] Processing NODE_6766_length_485_cov_16.175824:1-485 [pilon] NODE_12593_length_243_cov_27.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12593_length_243_cov_27.655738:1-243 [pilon] Processing NODE_5022_length_617_cov_4.832661:1-617 [pilon] NODE_2609_length_944_cov_1.284326:1-944 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 36, Coverage: 5, minDepth: 5 [pilon] Confirmed 511 of 944 bases (54.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2609_length_944_cov_1.284326:1-944 [pilon] Processing NODE_9796_length_334_cov_18.253521:1-334 [pilon] NODE_11313_length_270_cov_36.651007:1-270 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 119, Coverage: 13, minDepth: 5 [pilon] Confirmed 218 of 270 bases (80.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11313_length_270_cov_36.651007:1-270 [pilon] Processing NODE_13235_length_243_cov_20.786885:1-243 [pilon] NODE_4219_length_691_cov_57.068421:1-691 log: [pilon] frags shovill.bam: coverage 107 [pilon] Total Reads: 720, Coverage: 107, minDepth: 27 [pilon] Confirmed 620 of 691 bases (89.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4219_length_691_cov_57.068421:1-691 [pilon] Processing NODE_4001_length_715_cov_19.478114:1-715 [pilon] NODE_14688_length_243_cov_8.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14688_length_243_cov_8.680328:1-243 [pilon] Processing NODE_4718_length_642_cov_1.556622:1-642 [pilon] NODE_6688_length_491_cov_18.443243:1-491 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 174, Coverage: 17, minDepth: 5 [pilon] Confirmed 432 of 491 bases (87.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6688_length_491_cov_18.443243:1-491 [pilon] Processing NODE_14262_length_243_cov_12.131148:1-243 [pilon] NODE_4791_length_636_cov_0.524272:1-636 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 17, Coverage: 3, minDepth: 5 [pilon] Confirmed 185 of 636 bases (29.09%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4791_length_636_cov_0.524272:1-636 [pilon] Processing NODE_538_length_1871_cov_12.072000:1-1871 [pilon] NODE_8499_length_394_cov_13.238095:1-394 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 88, Coverage: 22, minDepth: 6 [pilon] Confirmed 357 of 394 bases (90.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8499_length_394_cov_13.238095:1-394 [pilon] Processing NODE_70_length_3293_cov_1.966583:1-3293 [pilon] NODE_11645_length_258_cov_16.525547:1-258 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 58, Coverage: 10, minDepth: 5 [pilon] Confirmed 205 of 258 bases (79.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11645_length_258_cov_16.525547:1-258 [pilon] Processing NODE_12745_length_243_cov_25.622951:1-243 [pilon] NODE_5708_length_563_cov_2.592760:1-563 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 33, Coverage: 7, minDepth: 5 [pilon] Confirmed 264 of 563 bases (46.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5708_length_563_cov_2.592760:1-563 [pilon] Processing NODE_4081_length_707_cov_22.761092:1-707 [pilon] NODE_6278_length_519_cov_17.640704:1-519 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 183, Coverage: 21, minDepth: 5 [pilon] Confirmed 311 of 519 bases (59.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6278_length_519_cov_17.640704:1-519 [pilon] Processing NODE_3953_length_721_cov_1.633333:1-721 [pilon] NODE_3328_length_810_cov_31.859216:1-810 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 527, Coverage: 45, minDepth: 11 [pilon] Confirmed 623 of 810 bases (76.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3328_length_810_cov_31.859216:1-810 [pilon] Processing NODE_7003_length_471_cov_17.914286:1-471 [pilon] NODE_13232_length_243_cov_20.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13232_length_243_cov_20.811475:1-243 [pilon] Processing NODE_14149_length_243_cov_13.114754:1-243 [pilon] NODE_3787_length_742_cov_17.199678:1-742 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 237, Coverage: 32, minDepth: 8 [pilon] Confirmed 582 of 742 bases (78.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3787_length_742_cov_17.199678:1-742 [pilon] Processing NODE_882_length_1575_cov_3.136864:1-1575 [pilon] NODE_10607_length_300_cov_27.156425:1-300 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 119, Coverage: 15, minDepth: 5 [pilon] Confirmed 273 of 300 bases (91.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10607_length_300_cov_27.156425:1-300 [pilon] Processing NODE_10147_length_319_cov_37.535354:1-319 [pilon] NODE_5972_length_543_cov_17.191943:1-543 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 184, Coverage: 23, minDepth: 6 [pilon] Confirmed 356 of 543 bases (65.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5972_length_543_cov_17.191943:1-543 [pilon] Processing NODE_14131_length_243_cov_13.278689:1-243 [pilon] NODE_12539_length_243_cov_28.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12539_length_243_cov_28.459016:1-243 [pilon] Processing NODE_1951_length_1098_cov_1.516888:1-1098 [pilon] NODE_9314_length_354_cov_8.433476:1-354 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 49, Coverage: 3, minDepth: 5 [pilon] Confirmed 128 of 354 bases (36.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9314_length_354_cov_8.433476:1-354 [pilon] Processing NODE_506_length_1909_cov_2.560403:1-1909 [pilon] NODE_9813_length_333_cov_25.509434:1-333 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 107, Coverage: 13, minDepth: 5 [pilon] Confirmed 216 of 333 bases (64.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9813_length_333_cov_25.509434:1-333 [pilon] Processing NODE_14931_length_243_cov_6.385246:1-243 [pilon] NODE_9617_length_341_cov_38.754545:1-341 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 192, Coverage: 35, minDepth: 9 [pilon] Confirmed 298 of 341 bases (87.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9617_length_341_cov_38.754545:1-341 [pilon] Processing NODE_10789_length_294_cov_11.537572:1-294 [pilon] NODE_5022_length_617_cov_4.832661:1-617 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 85, Coverage: 6, minDepth: 5 [pilon] Confirmed 230 of 617 bases (37.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5022_length_617_cov_4.832661:1-617 [pilon] Processing NODE_12725_length_243_cov_25.926230:1-243 [pilon] NODE_1286_length_1346_cov_39.636735:1-1346 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 1124, Coverage: 91, minDepth: 23 [pilon] Confirmed 1138 of 1346 bases (84.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1286_length_1346_cov_39.636735:1-1346 [pilon] Processing NODE_131_length_2811_cov_1.649442:1-2811 [pilon] NODE_4365_length_674_cov_25.801085:1-674 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 358, Coverage: 55, minDepth: 14 [pilon] Confirmed 562 of 674 bases (83.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4365_length_674_cov_25.801085:1-674 [pilon] Processing NODE_9586_length_342_cov_20.063348:1-342 [pilon] NODE_13751_length_243_cov_16.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13751_length_243_cov_16.049180:1-243 [pilon] Processing NODE_3963_length_719_cov_19.712375:1-719 [pilon] NODE_5033_length_616_cov_28.886869:1-616 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 347, Coverage: 46, minDepth: 12 [pilon] Confirmed 519 of 616 bases (84.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5033_length_616_cov_28.886869:1-616 [pilon] Processing NODE_13126_length_243_cov_21.704918:1-243 [pilon] NODE_3017_length_870_cov_15.626168:1-870 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 294, Coverage: 39, minDepth: 10 [pilon] Confirmed 573 of 870 bases (65.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3017_length_870_cov_15.626168:1-870 [pilon] Processing NODE_10887_length_288_cov_25.137725:1-288 [pilon] NODE_538_length_1871_cov_12.072000:1-1871 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 537, Coverage: 32, minDepth: 8 [pilon] Confirmed 1262 of 1871 bases (67.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_538_length_1871_cov_12.072000:1-1871 [pilon] Processing NODE_12108_length_243_cov_46.868852:1-243 [pilon] NODE_12470_length_243_cov_29.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12470_length_243_cov_29.614754:1-243 [pilon] Processing NODE_7946_length_420_cov_21.685619:1-420 [pilon] NODE_2776_length_913_cov_29.978535:1-913 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 635, Coverage: 74, minDepth: 19 [pilon] Confirmed 797 of 913 bases (87.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2776_length_913_cov_29.978535:1-913 [pilon] Processing NODE_1379_length_1306_cov_22.426160:1-1306 [pilon] NODE_6766_length_485_cov_16.175824:1-485 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 159, Coverage: 28, minDepth: 7 [pilon] Confirmed 443 of 485 bases (91.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6766_length_485_cov_16.175824:1-485 [pilon] Processing NODE_423_length_2004_cov_12.635157:1-2004 [pilon] NODE_70_length_3293_cov_1.966583:1-3293 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 226, Coverage: 9, minDepth: 5 [pilon] Confirmed 2587 of 3293 bases (78.56%) [pilon] Corrected 8 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_70_length_3293_cov_1.966583:1-3293 [pilon] Processing NODE_11648_length_258_cov_15.766423:1-258 [pilon] NODE_13235_length_243_cov_20.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13235_length_243_cov_20.786885:1-243 [pilon] Processing NODE_11673_length_258_cov_8.138686:1-258 [pilon] NODE_9796_length_334_cov_18.253521:1-334 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 64, Coverage: 2, minDepth: 5 [pilon] Confirmed 89 of 334 bases (26.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9796_length_334_cov_18.253521:1-334 [pilon] Processing NODE_4738_length_640_cov_15.919075:1-640 [pilon] NODE_4001_length_715_cov_19.478114:1-715 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 296, Coverage: 30, minDepth: 8 [pilon] Confirmed 467 of 715 bases (65.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4001_length_715_cov_19.478114:1-715 [pilon] Processing NODE_8129_length_411_cov_33.993103:1-411 [pilon] NODE_4718_length_642_cov_1.556622:1-642 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 296 of 642 bases (46.11%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4718_length_642_cov_1.556622:1-642 [pilon] Processing NODE_12562_length_243_cov_28.106557:1-243 [pilon] NODE_14262_length_243_cov_12.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14262_length_243_cov_12.131148:1-243 [pilon] Processing NODE_14264_length_243_cov_12.098361:1-243 [pilon] NODE_265_length_2299_cov_33.646465:1-2299 log: [pilon] frags shovill.bam: coverage 88 [pilon] Total Reads: 1671, Coverage: 88, minDepth: 22 [pilon] Confirmed 2146 of 2299 bases (93.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_265_length_2299_cov_33.646465:1-2299 [pilon] Processing NODE_4936_length_623_cov_6.894422:1-623 [pilon] NODE_14149_length_243_cov_13.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14149_length_243_cov_13.114754:1-243 [pilon] Processing NODE_5005_length_618_cov_3.545272:1-618 [pilon] NODE_12745_length_243_cov_25.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12745_length_243_cov_25.622951:1-243 [pilon] Processing NODE_2138_length_1049_cov_20.465517:1-1049 [pilon] NODE_3953_length_721_cov_1.633333:1-721 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 256 of 721 bases (35.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3953_length_721_cov_1.633333:1-721 [pilon] Processing NODE_8239_length_407_cov_3.723776:1-407 [pilon] NODE_7003_length_471_cov_17.914286:1-471 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 153, Coverage: 21, minDepth: 5 [pilon] Confirmed 340 of 471 bases (72.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7003_length_471_cov_17.914286:1-471 [pilon] Processing NODE_13467_length_243_cov_18.713115:1-243 [pilon] NODE_4081_length_707_cov_22.761092:1-707 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 319, Coverage: 47, minDepth: 12 [pilon] Confirmed 553 of 707 bases (78.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4081_length_707_cov_22.761092:1-707 [pilon] Processing NODE_7063_length_467_cov_23.274566:1-467 [pilon] NODE_10147_length_319_cov_37.535354:1-319 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 186, Coverage: 20, minDepth: 5 [pilon] Confirmed 245 of 319 bases (76.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10147_length_319_cov_37.535354:1-319 [pilon] Processing NODE_9018_length_366_cov_7.600000:1-366 [pilon] NODE_12725_length_243_cov_25.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12725_length_243_cov_25.926230:1-243 [pilon] Processing NODE_7387_length_449_cov_1.875000:1-449 [pilon] NODE_882_length_1575_cov_3.136864:1-1575 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 130, Coverage: 10, minDepth: 5 [pilon] Confirmed 1268 of 1575 bases (80.51%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_882_length_1575_cov_3.136864:1-1575 [pilon] Processing NODE_9051_length_363_cov_31.309917:1-363 [pilon] NODE_14131_length_243_cov_13.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14131_length_243_cov_13.278689:1-243 [pilon] Processing NODE_5948_length_544_cov_43.716312:1-544 [pilon] NODE_1951_length_1098_cov_1.516888:1-1098 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 59, Coverage: 7, minDepth: 5 [pilon] Confirmed 697 of 1098 bases (63.48%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1951_length_1098_cov_1.516888:1-1098 [pilon] Processing NODE_7448_length_446_cov_13.507692:1-446 [pilon] NODE_506_length_1909_cov_2.560403:1-1909 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 147, Coverage: 10, minDepth: 5 [pilon] Confirmed 1524 of 1909 bases (79.83%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_506_length_1909_cov_2.560403:1-1909 [pilon] Processing NODE_8716_length_381_cov_25.080769:1-381 [pilon] NODE_14931_length_243_cov_6.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14931_length_243_cov_6.385246:1-243 [pilon] Processing NODE_6009_length_540_cov_11.639618:1-540 [pilon] NODE_10789_length_294_cov_11.537572:1-294 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 35, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 294 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10789_length_294_cov_11.537572:1-294 [pilon] Processing NODE_1925_length_1105_cov_26.859756:1-1105 [pilon] NODE_12108_length_243_cov_46.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 96, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12108_length_243_cov_46.868852:1-243 [pilon] Processing NODE_5364_length_587_cov_16.420601:1-587 [pilon] NODE_11648_length_258_cov_15.766423:1-258 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 46, Coverage: 3, minDepth: 5 [pilon] Confirmed 37 of 258 bases (14.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11648_length_258_cov_15.766423:1-258 [pilon] Processing NODE_4258_length_687_cov_14.118375:1-687 [pilon] NODE_9586_length_342_cov_20.063348:1-342 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 102, Coverage: 16, minDepth: 5 [pilon] Confirmed 295 of 342 bases (86.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9586_length_342_cov_20.063348:1-342 [pilon] Processing NODE_369_length_2096_cov_23.930633:1-2096 [pilon] NODE_3963_length_719_cov_19.712375:1-719 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 300, Coverage: 50, minDepth: 13 [pilon] Confirmed 535 of 719 bases (74.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3963_length_719_cov_19.712375:1-719 [pilon] Processing NODE_12955_length_243_cov_23.385246:1-243 [pilon] NODE_131_length_2811_cov_1.649442:1-2811 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 138, Coverage: 6, minDepth: 5 [pilon] Confirmed 1500 of 2811 bases (53.36%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_131_length_2811_cov_1.649442:1-2811 [pilon] Processing NODE_817_length_1616_cov_23.424749:1-1616 [pilon] NODE_13126_length_243_cov_21.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13126_length_243_cov_21.704918:1-243 [pilon] Processing NODE_11829_length_252_cov_13.984733:1-252 [pilon] NODE_10887_length_288_cov_25.137725:1-288 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 93, Coverage: 7, minDepth: 5 [pilon] Confirmed 150 of 288 bases (52.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10887_length_288_cov_25.137725:1-288 [pilon] Processing NODE_5801_length_555_cov_7.241935:1-555 [pilon] NODE_423_length_2004_cov_12.635157:1-2004 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 634, Coverage: 32, minDepth: 8 [pilon] Confirmed 1797 of 2004 bases (89.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_423_length_2004_cov_12.635157:1-2004 [pilon] Processing NODE_7447_length_446_cov_14.729231:1-446 [pilon] NODE_7946_length_420_cov_21.685619:1-420 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 130, Coverage: 30, minDepth: 8 [pilon] Confirmed 352 of 420 bases (83.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7946_length_420_cov_21.685619:1-420 [pilon] Processing NODE_8181_length_409_cov_9.284722:1-409 [pilon] NODE_1379_length_1306_cov_22.426160:1-1306 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 623, Coverage: 55, minDepth: 14 [pilon] Confirmed 1037 of 1306 bases (79.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1379_length_1306_cov_22.426160:1-1306 [pilon] Processing NODE_11335_length_270_cov_18.342282:1-270 [pilon] NODE_12562_length_243_cov_28.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12562_length_243_cov_28.106557:1-243 [pilon] Processing NODE_12010_length_246_cov_16.008000:1-246 [pilon] NODE_14264_length_243_cov_12.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14264_length_243_cov_12.098361:1-243 [pilon] Processing NODE_14299_length_243_cov_11.852459:1-243 [pilon] NODE_11673_length_258_cov_8.138686:1-258 log: [pilon] NODE_8129_length_411_cov_33.993103:1-411 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 232, Coverage: 32, minDepth: 8 [pilon] Confirmed 294 of 411 bases (71.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8129_length_411_cov_33.993103:1-411 [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 30, Coverage: 3, minDepth: 5 [pilon] Confirmed 22 of 258 bases (8.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11673_length_258_cov_8.138686:1-258 [pilon] Processing NODE_2304_length_1009_cov_23.011261:1-1009 [pilon] Processing NODE_10193_length_318_cov_9.421320:1-318 [pilon] NODE_5005_length_618_cov_3.545272:1-618 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 50, Coverage: 8, minDepth: 5 [pilon] Confirmed 479 of 618 bases (77.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5005_length_618_cov_3.545272:1-618 [pilon] Processing NODE_5182_length_603_cov_12.201245:1-603 [pilon] NODE_7387_length_449_cov_1.875000:1-449 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 220 of 449 bases (49.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7387_length_449_cov_1.875000:1-449 [pilon] Processing NODE_1947_length_1099_cov_1.204499:1-1099 [pilon] NODE_4738_length_640_cov_15.919075:1-640 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 194, Coverage: 23, minDepth: 6 [pilon] Confirmed 554 of 640 bases (86.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4738_length_640_cov_15.919075:1-640 [pilon] Processing NODE_7290_length_455_cov_5.832335:1-455 [pilon] NODE_4936_length_623_cov_6.894422:1-623 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 83, Coverage: 8, minDepth: 5 [pilon] Confirmed 333 of 623 bases (53.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4936_length_623_cov_6.894422:1-623 [pilon] Processing NODE_8248_length_406_cov_23.231579:1-406 [pilon] NODE_8239_length_407_cov_3.723776:1-407 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 29, Coverage: 8, minDepth: 5 [pilon] Confirmed 304 of 407 bases (74.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8239_length_407_cov_3.723776:1-407 [pilon] Processing NODE_9552_length_344_cov_13.941704:1-344 [pilon] NODE_13467_length_243_cov_18.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13467_length_243_cov_18.713115:1-243 [pilon] Processing NODE_2756_length_917_cov_18.027638:1-917 [pilon] NODE_4258_length_687_cov_14.118375:1-687 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 180, Coverage: 34, minDepth: 9 [pilon] Confirmed 474 of 687 bases (69.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4258_length_687_cov_14.118375:1-687 [pilon] Processing NODE_825_length_1612_cov_2.010731:1-1612 [pilon] NODE_2138_length_1049_cov_20.465517:1-1049 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 581, Coverage: 54, minDepth: 14 [pilon] Confirmed 831 of 1049 bases (79.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2138_length_1049_cov_20.465517:1-1049 [pilon] Processing NODE_6281_length_519_cov_1.618090:1-519 [pilon] NODE_7063_length_467_cov_23.274566:1-467 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 173, Coverage: 18, minDepth: 5 [pilon] Confirmed 324 of 467 bases (69.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7063_length_467_cov_23.274566:1-467 [pilon] Processing NODE_1749_length_1160_cov_22.734360:1-1160 [pilon] NODE_5948_length_544_cov_43.716312:1-544 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 425, Coverage: 73, minDepth: 18 [pilon] Confirmed 406 of 544 bases (74.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5948_length_544_cov_43.716312:1-544 [pilon] Processing NODE_3717_length_752_cov_26.717908:1-752 [pilon] NODE_9051_length_363_cov_31.309917:1-363 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 181, Coverage: 19, minDepth: 5 [pilon] Confirmed 258 of 363 bases (71.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9051_length_363_cov_31.309917:1-363 [pilon] Processing NODE_11003_length_284_cov_31.674847:1-284 [pilon] NODE_9018_length_366_cov_7.600000:1-366 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 32, Coverage: 3, minDepth: 5 [pilon] Confirmed 120 of 366 bases (32.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9018_length_366_cov_7.600000:1-366 [pilon] Processing NODE_3904_length_727_cov_2.691419:1-727 [pilon] NODE_5364_length_587_cov_16.420601:1-587 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 168, Coverage: 25, minDepth: 6 [pilon] Confirmed 495 of 587 bases (84.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5364_length_587_cov_16.420601:1-587 [pilon] Processing NODE_10930_length_287_cov_21.066265:1-287 [pilon] NODE_7448_length_446_cov_13.507692:1-446 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 105, Coverage: 8, minDepth: 5 [pilon] Confirmed 275 of 446 bases (61.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7448_length_446_cov_13.507692:1-446 [pilon] Processing NODE_6349_length_514_cov_0.974555:1-514 [pilon] NODE_6009_length_540_cov_11.639618:1-540 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 99, Coverage: 18, minDepth: 5 [pilon] Confirmed 453 of 540 bases (83.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6009_length_540_cov_11.639618:1-540 [pilon] Processing NODE_14650_length_243_cov_9.016393:1-243 [pilon] NODE_8716_length_381_cov_25.080769:1-381 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 140, Coverage: 16, minDepth: 5 [pilon] Confirmed 247 of 381 bases (64.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8716_length_381_cov_25.080769:1-381 [pilon] Processing NODE_1231_length_1373_cov_17.801118:1-1373 [pilon] NODE_1925_length_1105_cov_26.859756:1-1105 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 620, Coverage: 44, minDepth: 11 [pilon] Confirmed 856 of 1105 bases (77.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1925_length_1105_cov_26.859756:1-1105 [pilon] Processing NODE_9942_length_328_cov_8.072464:1-328 [pilon] NODE_12955_length_243_cov_23.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12955_length_243_cov_23.385246:1-243 [pilon] Processing NODE_5913_length_547_cov_1.673709:1-547 [pilon] NODE_5801_length_555_cov_7.241935:1-555 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 94, Coverage: 10, minDepth: 5 [pilon] Confirmed 331 of 555 bases (59.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5801_length_555_cov_7.241935:1-555 [pilon] Processing NODE_11757_length_255_cov_14.492537:1-255 [pilon] NODE_11829_length_252_cov_13.984733:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_817_length_1616_cov_23.424749:1-1616 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 936, Coverage: 43, minDepth: 11 [pilon] Confirmed 1241 of 1616 bases (76.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_817_length_1616_cov_23.424749:1-1616 [pilon] Finished processing NODE_11829_length_252_cov_13.984733:1-252 [pilon] Processing NODE_8855_length_374_cov_24.241107:1-374 [pilon] Processing NODE_1030_length_1481_cov_2.222059:1-1481 [pilon] NODE_369_length_2096_cov_23.930633:1-2096 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 1345, Coverage: 60, minDepth: 15 [pilon] Confirmed 1819 of 2096 bases (86.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_369_length_2096_cov_23.930633:1-2096 [pilon] Processing NODE_9767_length_336_cov_9.920930:1-336 [pilon] NODE_12010_length_246_cov_16.008000:1-246 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 40, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12010_length_246_cov_16.008000:1-246 [pilon] Processing NODE_1303_length_1340_cov_44.550451:1-1340 [pilon] NODE_8181_length_409_cov_9.284722:1-409 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 34, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 409 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8181_length_409_cov_9.284722:1-409 [pilon] Processing NODE_13882_length_243_cov_15.024590:1-243 [pilon] NODE_7447_length_446_cov_14.729231:1-446 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 107, Coverage: 6, minDepth: 5 [pilon] Confirmed 224 of 446 bases (50.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7447_length_446_cov_14.729231:1-446 [pilon] Processing NODE_12812_length_243_cov_24.893443:1-243 [pilon] NODE_11335_length_270_cov_18.342282:1-270 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 52, Coverage: 9, minDepth: 5 [pilon] Confirmed 203 of 270 bases (75.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11335_length_270_cov_18.342282:1-270 [pilon] Processing NODE_8395_length_400_cov_7.939068:1-400 [pilon] NODE_2304_length_1009_cov_23.011261:1-1009 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 531, Coverage: 28, minDepth: 7 [pilon] Confirmed 765 of 1009 bases (75.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2304_length_1009_cov_23.011261:1-1009 [pilon] Processing NODE_14717_length_243_cov_8.450820:1-243 [pilon] NODE_14299_length_243_cov_11.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14299_length_243_cov_11.852459:1-243 [pilon] Processing NODE_12301_length_243_cov_33.139344:1-243 [pilon] NODE_5182_length_603_cov_12.201245:1-603 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 192, Coverage: 8, minDepth: 5 [pilon] Confirmed 299 of 603 bases (49.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5182_length_603_cov_12.201245:1-603 [pilon] Processing NODE_5000_length_618_cov_25.561368:1-618 [pilon] NODE_10193_length_318_cov_9.421320:1-318 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 53, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 318 bases (40.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10193_length_318_cov_9.421320:1-318 [pilon] Processing NODE_2972_length_879_cov_10.098945:1-879 [pilon] NODE_8248_length_406_cov_23.231579:1-406 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 161, Coverage: 25, minDepth: 6 [pilon] Confirmed 371 of 406 bases (91.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8248_length_406_cov_23.231579:1-406 [pilon] Processing NODE_13591_length_243_cov_17.573770:1-243 [pilon] NODE_1947_length_1099_cov_1.204499:1-1099 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 46, Coverage: 5, minDepth: 5 [pilon] Confirmed 825 of 1099 bases (75.07%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1947_length_1099_cov_1.204499:1-1099 [pilon] Processing NODE_13137_length_243_cov_21.631148:1-243 [pilon] NODE_7290_length_455_cov_5.832335:1-455 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 69, Coverage: 8, minDepth: 5 [pilon] Confirmed 272 of 455 bases (59.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7290_length_455_cov_5.832335:1-455 [pilon] Processing NODE_13755_length_243_cov_16.000000:1-243 [pilon] NODE_825_length_1612_cov_2.010731:1-1612 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 91, Coverage: 7, minDepth: 5 [pilon] Confirmed 1135 of 1612 bases (70.41%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_825_length_1612_cov_2.010731:1-1612 [pilon] Processing NODE_812_length_1621_cov_1.974667:1-1621 [pilon] NODE_9552_length_344_cov_13.941704:1-344 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 58, Coverage: 2, minDepth: 5 [pilon] Confirmed 88 of 344 bases (25.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9552_length_344_cov_13.941704:1-344 [pilon] Processing NODE_2370_length_998_cov_8.940707:1-998 [pilon] NODE_3904_length_727_cov_2.691419:1-727 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 45, Coverage: 8, minDepth: 5 [pilon] Confirmed 484 of 727 bases (66.57%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3904_length_727_cov_2.691419:1-727 [pilon] Processing NODE_14441_length_243_cov_10.729508:1-243 [pilon] NODE_14650_length_243_cov_9.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14650_length_243_cov_9.016393:1-243 [pilon] Processing NODE_3233_length_828_cov_0.694484:1-828 [pilon] NODE_2756_length_917_cov_18.027638:1-917 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 362, Coverage: 29, minDepth: 7 [pilon] Confirmed 635 of 917 bases (69.25%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2756_length_917_cov_18.027638:1-917 [pilon] Processing NODE_2916_length_889_cov_39.128906:1-889 [pilon] NODE_11757_length_255_cov_14.492537:1-255 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 48, Coverage: 7, minDepth: 5 [pilon] Confirmed 168 of 255 bases (65.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11757_length_255_cov_14.492537:1-255 [pilon] Processing NODE_2861_length_900_cov_14.522465:1-900 [pilon] NODE_10930_length_287_cov_21.066265:1-287 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 78, Coverage: 7, minDepth: 5 [pilon] Confirmed 180 of 287 bases (62.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10930_length_287_cov_21.066265:1-287 [pilon] Processing NODE_11815_length_252_cov_19.793893:1-252 [pilon] NODE_3717_length_752_cov_26.717908:1-752 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 402, Coverage: 49, minDepth: 12 [pilon] Confirmed 598 of 752 bases (79.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3717_length_752_cov_26.717908:1-752 [pilon] Processing NODE_4248_length_688_cov_2.776014:1-688 [pilon] NODE_6281_length_519_cov_1.618090:1-519 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 239 of 519 bases (46.05%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6281_length_519_cov_1.618090:1-519 [pilon] Processing NODE_13100_length_243_cov_21.942623:1-243 [pilon] NODE_1749_length_1160_cov_22.734360:1-1160 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 611, Coverage: 55, minDepth: 14 [pilon] Confirmed 1057 of 1160 bases (91.12%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1749_length_1160_cov_22.734360:1-1160 [pilon] Processing NODE_8792_length_378_cov_8.190661:1-378 [pilon] NODE_11003_length_284_cov_31.674847:1-284 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 121, Coverage: 7, minDepth: 5 [pilon] Confirmed 181 of 284 bases (63.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11003_length_284_cov_31.674847:1-284 [pilon] Processing NODE_12225_length_243_cov_35.491803:1-243 [pilon] NODE_1231_length_1373_cov_17.801118:1-1373 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 707, Coverage: 53, minDepth: 13 [pilon] Confirmed 1168 of 1373 bases (85.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1231_length_1373_cov_17.801118:1-1373 [pilon] Processing NODE_1106_length_1438_cov_2.094153:1-1438 [pilon] NODE_6349_length_514_cov_0.974555:1-514 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 116 of 514 bases (22.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6349_length_514_cov_0.974555:1-514 [pilon] Processing NODE_5046_length_615_cov_7.463563:1-615 [pilon] NODE_9942_length_328_cov_8.072464:1-328 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 37, Coverage: 7, minDepth: 5 [pilon] Confirmed 253 of 328 bases (77.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9942_length_328_cov_8.072464:1-328 [pilon] Processing NODE_13971_length_243_cov_14.311475:1-243 [pilon] NODE_5913_length_547_cov_1.673709:1-547 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 349 of 547 bases (63.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5913_length_547_cov_1.673709:1-547 [pilon] Processing NODE_10406_length_309_cov_7.941489:1-309 [pilon] NODE_9767_length_336_cov_9.920930:1-336 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 44, Coverage: 7, minDepth: 5 [pilon] Confirmed 167 of 336 bases (49.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9767_length_336_cov_9.920930:1-336 [pilon] Processing NODE_11444_length_265_cov_24.097222:1-265 [pilon] NODE_8855_length_374_cov_24.241107:1-374 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 153, Coverage: 5, minDepth: 5 [pilon] Confirmed 141 of 374 bases (37.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8855_length_374_cov_24.241107:1-374 [pilon] Processing NODE_2072_length_1067_cov_2.511628:1-1067 [pilon] NODE_1030_length_1481_cov_2.222059:1-1481 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 81, Coverage: 7, minDepth: 5 [pilon] Confirmed 862 of 1481 bases (58.20%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1030_length_1481_cov_2.222059:1-1481 [pilon] Processing NODE_9049_length_363_cov_36.219008:1-363 [pilon] NODE_12812_length_243_cov_24.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12812_length_243_cov_24.893443:1-243 [pilon] Processing NODE_12202_length_243_cov_36.639344:1-243 [pilon] NODE_13882_length_243_cov_15.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13882_length_243_cov_15.024590:1-243 [pilon] Processing NODE_11180_length_276_cov_21.870968:1-276 [pilon] Processing NODE_11808_length_252_cov_25.366412:1-252 [pilon] NODE_8395_length_400_cov_7.939068:1-400 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 56, Coverage: 4, minDepth: 5 [pilon] Confirmed 174 of 400 bases (43.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8395_length_400_cov_7.939068:1-400 [pilon] Processing NODE_1991_length_1088_cov_36.895553:1-1088 [pilon] NODE_3233_length_828_cov_0.694484:1-828 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 828 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3233_length_828_cov_0.694484:1-828 [pilon] Processing NODE_4873_length_629_cov_10.240157:1-629 [pilon] NODE_1303_length_1340_cov_44.550451:1-1340 log: [pilon] frags shovill.bam: coverage 106 [pilon] Total Reads: 1193, Coverage: 106, minDepth: 27 [pilon] Confirmed 1214 of 1340 bases (90.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1303_length_1340_cov_44.550451:1-1340 [pilon] Processing NODE_12226_length_243_cov_35.491803:1-243 [pilon] NODE_5000_length_618_cov_25.561368:1-618 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 281, Coverage: 19, minDepth: 5 [pilon] Confirmed 502 of 618 bases (81.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5000_length_618_cov_25.561368:1-618 [pilon] Processing NODE_13363_length_243_cov_19.713115:1-243 [pilon] NODE_14717_length_243_cov_8.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14717_length_243_cov_8.450820:1-243 [pilon] Processing NODE_9094_length_362_cov_7.842324:1-362 [pilon] NODE_12301_length_243_cov_33.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 93, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12301_length_243_cov_33.139344:1-243 [pilon] Processing NODE_13816_length_243_cov_15.524590:1-243 [pilon] NODE_2972_length_879_cov_10.098945:1-879 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 175, Coverage: 12, minDepth: 5 [pilon] Confirmed 658 of 879 bases (74.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2972_length_879_cov_10.098945:1-879 [pilon] Processing NODE_3513_length_781_cov_22.531818:1-781 [pilon] NODE_13591_length_243_cov_17.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13591_length_243_cov_17.573770:1-243 [pilon] Processing NODE_1850_length_1129_cov_3.302579:1-1129 [pilon] NODE_13755_length_243_cov_16.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13755_length_243_cov_16.000000:1-243 [pilon] Processing NODE_3915_length_726_cov_1.540496:1-726 [pilon] NODE_2370_length_998_cov_8.940707:1-998 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 188, Coverage: 24, minDepth: 6 [pilon] Confirmed 826 of 998 bases (82.77%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2370_length_998_cov_8.940707:1-998 [pilon] Processing NODE_5138_length_607_cov_1.043210:1-607 [pilon] NODE_812_length_1621_cov_1.974667:1-1621 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 94, Coverage: 7, minDepth: 5 [pilon] Confirmed 922 of 1621 bases (56.88%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_812_length_1621_cov_1.974667:1-1621 [pilon] Processing NODE_7933_length_421_cov_21.906667:1-421 [pilon] NODE_13137_length_243_cov_21.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13137_length_243_cov_21.631148:1-243 [pilon] Processing NODE_3318_length_812_cov_3.518090:1-812 [pilon] NODE_11815_length_252_cov_19.793893:1-252 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 157 of 252 bases (62.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11815_length_252_cov_19.793893:1-252 [pilon] Processing NODE_8470_length_395_cov_54.492701:1-395 [pilon] NODE_14441_length_243_cov_10.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14441_length_243_cov_10.729508:1-243 [pilon] Processing NODE_15198_length_159_cov_96.947368:1-159 [pilon] NODE_13100_length_243_cov_21.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13100_length_243_cov_21.942623:1-243 [pilon] NODE_12225_length_243_cov_35.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 89, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_4966_length_621_cov_16.576000:1-621 [pilon] Finished processing NODE_12225_length_243_cov_35.491803:1-243 [pilon] Processing NODE_8384_length_401_cov_4.517857:1-401 [pilon] NODE_4248_length_688_cov_2.776014:1-688 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 45, Coverage: 8, minDepth: 5 [pilon] Confirmed 477 of 688 bases (69.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4248_length_688_cov_2.776014:1-688 [pilon] Processing NODE_516_length_1902_cov_17.918024:1-1902 [pilon] NODE_2916_length_889_cov_39.128906:1-889 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 713, Coverage: 65, minDepth: 16 [pilon] Confirmed 720 of 889 bases (80.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2916_length_889_cov_39.128906:1-889 [pilon] Processing NODE_8793_length_378_cov_6.789883:1-378 [pilon] NODE_2861_length_900_cov_14.522465:1-900 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 265, Coverage: 24, minDepth: 6 [pilon] Confirmed 621 of 900 bases (69.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2861_length_900_cov_14.522465:1-900 [pilon] Processing NODE_2672_length_933_cov_18.863300:1-933 [pilon] NODE_8792_length_378_cov_8.190661:1-378 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 44, Coverage: 2, minDepth: 5 [pilon] Confirmed 87 of 378 bases (23.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8792_length_378_cov_8.190661:1-378 [pilon] Processing NODE_4564_length_656_cov_26.902804:1-656 [pilon] NODE_5046_length_615_cov_7.463563:1-615 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 84, Coverage: 12, minDepth: 5 [pilon] Confirmed 478 of 615 bases (77.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5046_length_615_cov_7.463563:1-615 [pilon] Processing NODE_13487_length_243_cov_18.500000:1-243 [pilon] NODE_13971_length_243_cov_14.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13971_length_243_cov_14.311475:1-243 [pilon] Processing NODE_8309_length_404_cov_8.809187:1-404 [pilon] NODE_1106_length_1438_cov_2.094153:1-1438 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 88, Coverage: 8, minDepth: 5 [pilon] Confirmed 1023 of 1438 bases (71.14%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1106_length_1438_cov_2.094153:1-1438 [pilon] Processing NODE_8631_length_387_cov_6.736842:1-387 [pilon] NODE_10406_length_309_cov_7.941489:1-309 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 309 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10406_length_309_cov_7.941489:1-309 [pilon] Processing NODE_11207_length_276_cov_9.490323:1-276 [pilon] NODE_13363_length_243_cov_19.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13363_length_243_cov_19.713115:1-243 [pilon] Processing NODE_1655_length_1199_cov_6.688312:1-1199 [pilon] NODE_12202_length_243_cov_36.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 93, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_11444_length_265_cov_24.097222:1-265 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 76, Coverage: 6, minDepth: 5 [pilon] Confirmed 168 of 265 bases (63.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11444_length_265_cov_24.097222:1-265 [pilon] Finished processing NODE_12202_length_243_cov_36.639344:1-243 [pilon] Processing NODE_13945_length_243_cov_14.549180:1-243 [pilon] Processing NODE_9483_length_346_cov_29.795556:1-346 [pilon] NODE_9049_length_363_cov_36.219008:1-363 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 197, Coverage: 29, minDepth: 7 [pilon] Confirmed 328 of 363 bases (90.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9049_length_363_cov_36.219008:1-363 [pilon] Processing NODE_5675_length_564_cov_39.823928:1-564 [pilon] NODE_2072_length_1067_cov_2.511628:1-1067 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 59, Coverage: 7, minDepth: 5 [pilon] Confirmed 758 of 1067 bases (71.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2072_length_1067_cov_2.511628:1-1067 [pilon] Processing NODE_10926_length_288_cov_6.371257:1-288 [pilon] NODE_4873_length_629_cov_10.240157:1-629 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 115, Coverage: 20, minDepth: 5 [pilon] Confirmed 496 of 629 bases (78.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4873_length_629_cov_10.240157:1-629 [pilon] Processing NODE_11714_length_255_cov_28.552239:1-255 [pilon] NODE_3513_length_781_cov_22.531818:1-781 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 373, Coverage: 45, minDepth: 11 [pilon] Confirmed 601 of 781 bases (76.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3513_length_781_cov_22.531818:1-781 [pilon] Processing NODE_8353_length_402_cov_22.498221:1-402 [pilon] NODE_11808_length_252_cov_25.366412:1-252 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 65, Coverage: 8, minDepth: 5 [pilon] Confirmed 199 of 252 bases (78.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11808_length_252_cov_25.366412:1-252 [pilon] Processing NODE_914_length_1548_cov_14.461808:1-1548 [pilon] NODE_11180_length_276_cov_21.870968:1-276 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11180_length_276_cov_21.870968:1-276 [pilon] Processing NODE_2894_length_894_cov_2.147477:1-894 [pilon] NODE_12226_length_243_cov_35.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12226_length_243_cov_35.491803:1-243 [pilon] Processing NODE_14374_length_243_cov_11.254098:1-243 [pilon] NODE_1991_length_1088_cov_36.895553:1-1088 log: [pilon] frags shovill.bam: coverage 82 [pilon] Total Reads: 828, Coverage: 82, minDepth: 21 [pilon] Confirmed 745 of 1088 bases (68.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1991_length_1088_cov_36.895553:1-1088 [pilon] Processing NODE_2455_length_976_cov_37.336842:1-976 [pilon] NODE_13816_length_243_cov_15.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13816_length_243_cov_15.524590:1-243 [pilon] Processing NODE_12310_length_243_cov_32.959016:1-243 [pilon] NODE_9094_length_362_cov_7.842324:1-362 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 42, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 362 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9094_length_362_cov_7.842324:1-362 [pilon] Processing NODE_13849_length_243_cov_15.303279:1-243 [pilon] NODE_5138_length_607_cov_1.043210:1-607 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 239 of 607 bases (39.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5138_length_607_cov_1.043210:1-607 [pilon] Processing NODE_13224_length_243_cov_20.893443:1-243 [pilon] NODE_7933_length_421_cov_21.906667:1-421 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 172, Coverage: 17, minDepth: 5 [pilon] Confirmed 385 of 421 bases (91.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7933_length_421_cov_21.906667:1-421 [pilon] Processing NODE_10141_length_320_cov_21.693467:1-320 [pilon] NODE_1850_length_1129_cov_3.302579:1-1129 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 86, Coverage: 10, minDepth: 5 [pilon] Confirmed 855 of 1129 bases (75.73%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1850_length_1129_cov_3.302579:1-1129 [pilon] Processing NODE_9940_length_328_cov_12.260870:1-328 [pilon] NODE_15198_length_159_cov_96.947368:1-159 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 83, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 159 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15198_length_159_cov_96.947368:1-159 [pilon] Processing NODE_11516_length_263_cov_19.760563:1-263 [pilon] NODE_3318_length_812_cov_3.518090:1-812 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 68, Coverage: 11, minDepth: 5 [pilon] Confirmed 490 of 812 bases (60.34%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3318_length_812_cov_3.518090:1-812 [pilon] Processing NODE_14634_length_243_cov_9.163934:1-243 [pilon] NODE_3915_length_726_cov_1.540496:1-726 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 37, Coverage: 7, minDepth: 5 [pilon] Confirmed 445 of 726 bases (61.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3915_length_726_cov_1.540496:1-726 [pilon] Processing NODE_13626_length_243_cov_17.229508:1-243 [pilon] NODE_8384_length_401_cov_4.517857:1-401 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 80, Coverage: 22, minDepth: 6 [pilon] Confirmed 329 of 401 bases (82.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8384_length_401_cov_4.517857:1-401 [pilon] Processing NODE_5987_length_542_cov_11.546318:1-542 [pilon] NODE_4966_length_621_cov_16.576000:1-621 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 204, Coverage: 21, minDepth: 5 [pilon] Confirmed 358 of 621 bases (57.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4966_length_621_cov_16.576000:1-621 [pilon] Processing NODE_15058_length_239_cov_53.491525:1-239 [pilon] NODE_8470_length_395_cov_54.492701:1-395 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 351, Coverage: 54, minDepth: 14 [pilon] Confirmed 342 of 395 bases (86.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8470_length_395_cov_54.492701:1-395 [pilon] Processing NODE_5395_length_584_cov_26.062635:1-584 [pilon] NODE_8793_length_378_cov_6.789883:1-378 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 44, Coverage: 5, minDepth: 5 [pilon] Confirmed 219 of 378 bases (57.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8793_length_378_cov_6.789883:1-378 [pilon] Processing NODE_3743_length_749_cov_3.888535:1-749 [pilon] NODE_1655_length_1199_cov_6.688312:1-1199 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 188, Coverage: 16, minDepth: 5 [pilon] Confirmed 902 of 1199 bases (75.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1655_length_1199_cov_6.688312:1-1199 [pilon] Processing NODE_2793_length_910_cov_15.006337:1-910 [pilon] NODE_4564_length_656_cov_26.902804:1-656 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 343, Coverage: 42, minDepth: 11 [pilon] Confirmed 596 of 656 bases (90.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4564_length_656_cov_26.902804:1-656 [pilon] Processing NODE_12901_length_243_cov_24.065574:1-243 [pilon] NODE_8309_length_404_cov_8.809187:1-404 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 68, Coverage: 4, minDepth: 5 [pilon] Confirmed 188 of 404 bases (46.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8309_length_404_cov_8.809187:1-404 [pilon] Processing NODE_7964_length_420_cov_7.056856:1-420 [pilon] NODE_8631_length_387_cov_6.736842:1-387 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 48, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 387 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8631_length_387_cov_6.736842:1-387 [pilon] Processing NODE_12046_length_246_cov_6.672000:1-246 [pilon] NODE_2672_length_933_cov_18.863300:1-933 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 373, Coverage: 25, minDepth: 6 [pilon] Confirmed 698 of 933 bases (74.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2672_length_933_cov_18.863300:1-933 [pilon] Processing NODE_13315_length_243_cov_20.114754:1-243 [pilon] NODE_13487_length_243_cov_18.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13487_length_243_cov_18.500000:1-243 [pilon] Processing NODE_1663_length_1195_cov_36.107076:1-1195 [pilon] NODE_516_length_1902_cov_17.918024:1-1902 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 826, Coverage: 46, minDepth: 12 [pilon] Confirmed 1293 of 1902 bases (67.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_516_length_1902_cov_17.918024:1-1902 [pilon] Processing NODE_8703_length_382_cov_14.141762:1-382 [pilon] NODE_5675_length_564_cov_39.823928:1-564 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 398, Coverage: 26, minDepth: 7 [pilon] Confirmed 375 of 564 bases (66.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5675_length_564_cov_39.823928:1-564 [pilon] Processing NODE_1651_length_1200_cov_8.567192:1-1200 [pilon] NODE_11207_length_276_cov_9.490323:1-276 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 34, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 276 bases (47.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11207_length_276_cov_9.490323:1-276 [pilon] Processing NODE_8754_length_380_cov_9.903475:1-380 [pilon] NODE_8353_length_402_cov_22.498221:1-402 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 123, Coverage: 16, minDepth: 5 [pilon] Confirmed 350 of 402 bases (87.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8353_length_402_cov_22.498221:1-402 [pilon] Processing NODE_9758_length_336_cov_13.995349:1-336 [pilon] NODE_13945_length_243_cov_14.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13945_length_243_cov_14.549180:1-243 [pilon] Processing NODE_14847_length_243_cov_7.229508:1-243 [pilon] NODE_10926_length_288_cov_6.371257:1-288 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10926_length_288_cov_6.371257:1-288 [pilon] Processing NODE_4815_length_633_cov_22.957031:1-633 [pilon] NODE_9483_length_346_cov_29.795556:1-346 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 125, Coverage: 3, minDepth: 5 [pilon] Confirmed 125 of 346 bases (36.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9483_length_346_cov_29.795556:1-346 [pilon] Processing NODE_3150_length_842_cov_6.828017:1-842 [pilon] NODE_11714_length_255_cov_28.552239:1-255 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 76, Coverage: 5, minDepth: 5 [pilon] Confirmed 150 of 255 bases (58.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11714_length_255_cov_28.552239:1-255 [pilon] Processing NODE_93_length_3068_cov_2.089243:1-3068 [pilon] NODE_2894_length_894_cov_2.147477:1-894 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 63, Coverage: 9, minDepth: 5 [pilon] Confirmed 647 of 894 bases (72.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2894_length_894_cov_2.147477:1-894 [pilon] Processing NODE_6139_length_529_cov_2.541667:1-529 [pilon] NODE_914_length_1548_cov_14.461808:1-1548 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 460, Coverage: 29, minDepth: 7 [pilon] Confirmed 1020 of 1548 bases (65.89%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_914_length_1548_cov_14.461808:1-1548 [pilon] Processing NODE_12933_length_243_cov_23.606557:1-243 [pilon] NODE_2455_length_976_cov_37.336842:1-976 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 755, Coverage: 72, minDepth: 18 [pilon] Confirmed 769 of 976 bases (78.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_14374_length_243_cov_11.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14374_length_243_cov_11.254098:1-243 [pilon] Finished processing NODE_2455_length_976_cov_37.336842:1-976 [pilon] Processing NODE_4371_length_674_cov_3.978300:1-674 [pilon] Processing NODE_2982_length_877_cov_13.103175:1-877 [pilon] NODE_12310_length_243_cov_32.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12310_length_243_cov_32.959016:1-243 [pilon] Processing NODE_6685_length_491_cov_22.043243:1-491 [pilon] NODE_13849_length_243_cov_15.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13849_length_243_cov_15.303279:1-243 [pilon] Processing NODE_5904_length_547_cov_36.521127:1-547 [pilon] NODE_13224_length_243_cov_20.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13224_length_243_cov_20.893443:1-243 [pilon] Processing NODE_7732_length_431_cov_0.964516:1-431 [pilon] NODE_9940_length_328_cov_12.260870:1-328 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 63, Coverage: 6, minDepth: 5 [pilon] Confirmed 177 of 328 bases (53.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9940_length_328_cov_12.260870:1-328 [pilon] Processing NODE_12489_length_243_cov_29.319672:1-243 [pilon] NODE_10141_length_320_cov_21.693467:1-320 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 92, Coverage: 3, minDepth: 5 [pilon] Confirmed 82 of 320 bases (25.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10141_length_320_cov_21.693467:1-320 [pilon] Processing NODE_14132_length_243_cov_13.278689:1-243 [pilon] NODE_14634_length_243_cov_9.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14634_length_243_cov_9.163934:1-243 [pilon] Processing NODE_5052_length_615_cov_0.923077:1-615 [pilon] NODE_13626_length_243_cov_17.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13626_length_243_cov_17.229508:1-243 [pilon] Processing NODE_4168_length_697_cov_9.875000:1-697 [pilon] NODE_5395_length_584_cov_26.062635:1-584 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 289, Coverage: 45, minDepth: 11 [pilon] Confirmed 504 of 584 bases (86.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5395_length_584_cov_26.062635:1-584 [pilon] Processing NODE_10290_length_314_cov_10.554404:1-314 [pilon] NODE_15058_length_239_cov_53.491525:1-239 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 154, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 239 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15058_length_239_cov_53.491525:1-239 [pilon] Processing NODE_12286_length_243_cov_33.532787:1-243 [pilon] NODE_12046_length_246_cov_6.672000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 16, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12046_length_246_cov_6.672000:1-246 [pilon] Processing NODE_7126_length_464_cov_23.002915:1-464 [pilon] NODE_7964_length_420_cov_7.056856:1-420 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 55, Coverage: 13, minDepth: 5 [pilon] Confirmed 365 of 420 bases (86.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7964_length_420_cov_7.056856:1-420 [pilon] Processing NODE_4094_length_706_cov_2.873504:1-706 [pilon] NODE_12901_length_243_cov_24.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12901_length_243_cov_24.065574:1-243 [pilon] Processing NODE_4414_length_670_cov_4.990893:1-670 [pilon] NODE_3743_length_749_cov_3.888535:1-749 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 76, Coverage: 11, minDepth: 5 [pilon] Confirmed 651 of 749 bases (86.92%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3743_length_749_cov_3.888535:1-749 [pilon] NODE_13315_length_243_cov_20.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13315_length_243_cov_20.114754:1-243 [pilon] Processing NODE_14183_length_243_cov_12.762295:1-243 [pilon] Processing NODE_14558_length_243_cov_9.836066:1-243 [pilon] NODE_5987_length_542_cov_11.546318:1-542 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 97, Coverage: 23, minDepth: 6 [pilon] Confirmed 440 of 542 bases (81.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5987_length_542_cov_11.546318:1-542 [pilon] Processing NODE_728_length_1685_cov_23.729540:1-1685 [pilon] NODE_3150_length_842_cov_6.828017:1-842 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 128, Coverage: 9, minDepth: 5 [pilon] Confirmed 640 of 842 bases (76.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3150_length_842_cov_6.828017:1-842 [pilon] Processing NODE_1322_length_1332_cov_2.667217:1-1332 [pilon] NODE_1651_length_1200_cov_8.567192:1-1200 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 239, Coverage: 19, minDepth: 5 [pilon] Confirmed 1103 of 1200 bases (91.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1651_length_1200_cov_8.567192:1-1200 [pilon] Processing NODE_10589_length_302_cov_7.182320:1-302 [pilon] NODE_9758_length_336_cov_13.995349:1-336 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 86, Coverage: 7, minDepth: 5 [pilon] Confirmed 261 of 336 bases (77.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9758_length_336_cov_13.995349:1-336 [pilon] Processing NODE_5042_length_615_cov_24.036437:1-615 [pilon] NODE_8703_length_382_cov_14.141762:1-382 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 103, Coverage: 9, minDepth: 5 [pilon] Confirmed 297 of 382 bases (77.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8703_length_382_cov_14.141762:1-382 [pilon] Processing NODE_1419_length_1292_cov_2.049530:1-1292 [pilon] NODE_4371_length_674_cov_3.978300:1-674 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 69, Coverage: 12, minDepth: 5 [pilon] Confirmed 507 of 674 bases (75.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4371_length_674_cov_3.978300:1-674 [pilon] Processing NODE_1810_length_1144_cov_23.996090:1-1144 [pilon] NODE_8754_length_380_cov_9.903475:1-380 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 72, Coverage: 2, minDepth: 5 [pilon] Confirmed 85 of 380 bases (22.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8754_length_380_cov_9.903475:1-380 [pilon] Processing NODE_9269_length_354_cov_60.261803:1-354 [pilon] NODE_1663_length_1195_cov_36.107076:1-1195 log: [pilon] frags shovill.bam: coverage 82 [pilon] Total Reads: 872, Coverage: 82, minDepth: 21 [pilon] Confirmed 1059 of 1195 bases (88.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1663_length_1195_cov_36.107076:1-1195 [pilon] Processing NODE_3306_length_814_cov_16.910534:1-814 [pilon] NODE_14847_length_243_cov_7.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14847_length_243_cov_7.229508:1-243 [pilon] Processing NODE_3112_length_849_cov_15.620879:1-849 [pilon] NODE_2793_length_910_cov_15.006337:1-910 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 235, Coverage: 24, minDepth: 6 [pilon] Confirmed 711 of 910 bases (78.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2793_length_910_cov_15.006337:1-910 [pilon] Processing NODE_725_length_1686_cov_19.040256:1-1686 [pilon] NODE_4815_length_633_cov_22.957031:1-633 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 252, Coverage: 43, minDepth: 11 [pilon] Confirmed 480 of 633 bases (75.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4815_length_633_cov_22.957031:1-633 [pilon] Processing NODE_14419_length_243_cov_10.909836:1-243 [pilon] NODE_6685_length_491_cov_22.043243:1-491 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 193, Coverage: 24, minDepth: 6 [pilon] Confirmed 391 of 491 bases (79.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6685_length_491_cov_22.043243:1-491 [pilon] Processing NODE_4470_length_664_cov_12.349908:1-664 [pilon] NODE_12933_length_243_cov_23.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12933_length_243_cov_23.606557:1-243 [pilon] Processing NODE_1585_length_1224_cov_20.945603:1-1224 [pilon] NODE_93_length_3068_cov_2.089243:1-3068 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 185, Coverage: 8, minDepth: 5 [pilon] Confirmed 2196 of 3068 bases (71.58%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_93_length_3068_cov_2.089243:1-3068 [pilon] Processing NODE_7501_length_443_cov_15.658385:1-443 [pilon] NODE_6139_length_529_cov_2.541667:1-529 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 43, Coverage: 8, minDepth: 5 [pilon] Confirmed 412 of 529 bases (77.88%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6139_length_529_cov_2.541667:1-529 [pilon] Processing NODE_188_length_2547_cov_13.906430:1-2547 [pilon] NODE_11516_length_263_cov_19.760563:1-263 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 61, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 263 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11516_length_263_cov_19.760563:1-263 [pilon] Processing NODE_7207_length_459_cov_37.532544:1-459 [pilon] NODE_2982_length_877_cov_13.103175:1-877 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 274, Coverage: 28, minDepth: 7 [pilon] Confirmed 759 of 877 bases (86.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2982_length_877_cov_13.103175:1-877 [pilon] Processing NODE_7872_length_424_cov_0.966997:1-424 [pilon] NODE_5904_length_547_cov_36.521127:1-547 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 404, Coverage: 44, minDepth: 11 [pilon] Confirmed 298 of 547 bases (54.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5904_length_547_cov_36.521127:1-547 [pilon] Processing NODE_4764_length_638_cov_22.237911:1-638 [pilon] NODE_1322_length_1332_cov_2.667217:1-1332 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 88, Coverage: 9, minDepth: 5 [pilon] Confirmed 979 of 1332 bases (73.50%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1322_length_1332_cov_2.667217:1-1332 [pilon] Processing NODE_7621_length_436_cov_26.168254:1-436 [pilon] NODE_7732_length_431_cov_0.964516:1-431 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 137 of 431 bases (31.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7732_length_431_cov_0.964516:1-431 [pilon] NODE_1810_length_1144_cov_23.996090:1-1144 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 511, Coverage: 23, minDepth: 6 [pilon] Confirmed 730 of 1144 bases (63.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1810_length_1144_cov_23.996090:1-1144 [pilon] Processing NODE_14097_length_243_cov_13.475410:1-243 [pilon] Processing NODE_6540_length_501_cov_2.597368:1-501 [pilon] NODE_14132_length_243_cov_13.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14132_length_243_cov_13.278689:1-243 [pilon] Processing NODE_10342_length_312_cov_10.701571:1-312 [pilon] NODE_12286_length_243_cov_33.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 89, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12286_length_243_cov_33.532787:1-243 [pilon] Processing NODE_4080_length_707_cov_23.790102:1-707 [pilon] NODE_12489_length_243_cov_29.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12489_length_243_cov_29.319672:1-243 [pilon] Processing NODE_9293_length_354_cov_18.051502:1-354 [pilon] NODE_10290_length_314_cov_10.554404:1-314 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 72, Coverage: 7, minDepth: 5 [pilon] Confirmed 172 of 314 bases (54.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10290_length_314_cov_10.554404:1-314 [pilon] Processing NODE_631_length_1771_cov_2.429091:1-1771 [pilon] NODE_4414_length_670_cov_4.990893:1-670 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 86, Coverage: 4, minDepth: 5 [pilon] Confirmed 223 of 670 bases (33.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4414_length_670_cov_4.990893:1-670 [pilon] Processing NODE_5416_length_583_cov_1.495671:1-583 [pilon] NODE_5052_length_615_cov_0.923077:1-615 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 8 of 615 bases (1.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5052_length_615_cov_0.923077:1-615 [pilon] Processing NODE_1721_length_1173_cov_1.827947:1-1173 [pilon] NODE_14558_length_243_cov_9.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14558_length_243_cov_9.836066:1-243 [pilon] Processing NODE_15163_length_181_cov_17.733333:1-181 [pilon] NODE_4094_length_706_cov_2.873504:1-706 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 337 of 706 bases (47.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4094_length_706_cov_2.873504:1-706 [pilon] Processing NODE_3148_length_842_cov_19.228849:1-842 [pilon] NODE_7126_length_464_cov_23.002915:1-464 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 185, Coverage: 20, minDepth: 5 [pilon] Confirmed 370 of 464 bases (79.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7126_length_464_cov_23.002915:1-464 [pilon] Processing NODE_8472_length_395_cov_32.266423:1-395 [pilon] NODE_4168_length_697_cov_9.875000:1-697 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 247, Coverage: 45, minDepth: 11 [pilon] Confirmed 539 of 697 bases (77.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4168_length_697_cov_9.875000:1-697 [pilon] Processing NODE_13228_length_243_cov_20.868852:1-243 [pilon] NODE_14183_length_243_cov_12.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14183_length_243_cov_12.762295:1-243 [pilon] Processing NODE_947_length_1531_cov_20.127660:1-1531 [pilon] NODE_10589_length_302_cov_7.182320:1-302 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 31, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 302 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10589_length_302_cov_7.182320:1-302 [pilon] Processing NODE_6704_length_490_cov_9.151762:1-490 [pilon] NODE_728_length_1685_cov_23.729540:1-1685 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 855, Coverage: 59, minDepth: 15 [pilon] Confirmed 1420 of 1685 bases (84.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_728_length_1685_cov_23.729540:1-1685 [pilon] Processing NODE_10834_length_291_cov_13.758824:1-291 [pilon] NODE_5042_length_615_cov_24.036437:1-615 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 339, Coverage: 23, minDepth: 6 [pilon] Confirmed 370 of 615 bases (60.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5042_length_615_cov_24.036437:1-615 [pilon] Processing NODE_10494_length_305_cov_15.875000:1-305 [pilon] NODE_1419_length_1292_cov_2.049530:1-1292 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 76, Coverage: 8, minDepth: 5 [pilon] Confirmed 913 of 1292 bases (70.67%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1419_length_1292_cov_2.049530:1-1292 [pilon] Processing NODE_6565_length_499_cov_3.743386:1-499 [pilon] NODE_14419_length_243_cov_10.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14419_length_243_cov_10.909836:1-243 [pilon] Processing NODE_10385_length_309_cov_18.952128:1-309 [pilon] NODE_3112_length_849_cov_15.620879:1-849 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 335, Coverage: 41, minDepth: 10 [pilon] Confirmed 780 of 849 bases (91.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3112_length_849_cov_15.620879:1-849 [pilon] Processing NODE_1259_length_1359_cov_18.506462:1-1359 [pilon] NODE_3306_length_814_cov_16.910534:1-814 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 357, Coverage: 35, minDepth: 9 [pilon] Confirmed 717 of 814 bases (88.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3306_length_814_cov_16.910534:1-814 [pilon] Processing NODE_4766_length_638_cov_12.959381:1-638 [pilon] NODE_9269_length_354_cov_60.261803:1-354 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 314, Coverage: 47, minDepth: 12 [pilon] Confirmed 308 of 354 bases (87.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9269_length_354_cov_60.261803:1-354 [pilon] Processing NODE_10530_length_303_cov_23.912088:1-303 [pilon] NODE_725_length_1686_cov_19.040256:1-1686 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 691, Coverage: 53, minDepth: 13 [pilon] Confirmed 1413 of 1686 bases (83.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_725_length_1686_cov_19.040256:1-1686 [pilon] Processing NODE_7341_length_451_cov_14.445455:1-451 [pilon] NODE_7501_length_443_cov_15.658385:1-443 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 117, Coverage: 26, minDepth: 7 [pilon] Confirmed 383 of 443 bases (86.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7501_length_443_cov_15.658385:1-443 [pilon] Processing NODE_8558_length_390_cov_22.230483:1-390 [pilon] NODE_4470_length_664_cov_12.349908:1-664 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 149, Coverage: 29, minDepth: 7 [pilon] Confirmed 512 of 664 bases (77.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4470_length_664_cov_12.349908:1-664 [pilon] Processing NODE_1157_length_1415_cov_1.666924:1-1415 [pilon] NODE_7207_length_459_cov_37.532544:1-459 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 304, Coverage: 33, minDepth: 8 [pilon] Confirmed 272 of 459 bases (59.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7207_length_459_cov_37.532544:1-459 [pilon] Processing NODE_3748_length_747_cov_29.263578:1-747 [pilon] NODE_1585_length_1224_cov_20.945603:1-1224 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 547, Coverage: 35, minDepth: 9 [pilon] Confirmed 1045 of 1224 bases (85.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1585_length_1224_cov_20.945603:1-1224 [pilon] Processing NODE_8188_length_409_cov_1.277778:1-409 [pilon] NODE_7872_length_424_cov_0.966997:1-424 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 424 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7872_length_424_cov_0.966997:1-424 [pilon] Processing NODE_14073_length_243_cov_13.655738:1-243 [pilon] NODE_188_length_2547_cov_13.906430:1-2547 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 937, Coverage: 39, minDepth: 10 [pilon] Confirmed 2338 of 2547 bases (91.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_188_length_2547_cov_13.906430:1-2547 [pilon] Processing NODE_9085_length_362_cov_36.348548:1-362 [pilon] NODE_7621_length_436_cov_26.168254:1-436 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 178, Coverage: 10, minDepth: 5 [pilon] Confirmed 237 of 436 bases (54.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7621_length_436_cov_26.168254:1-436 [pilon] Processing NODE_4705_length_643_cov_1.936782:1-643 [pilon] NODE_6540_length_501_cov_2.597368:1-501 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 31, Coverage: 8, minDepth: 5 [pilon] Confirmed 322 of 501 bases (64.27%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6540_length_501_cov_2.597368:1-501 [pilon] Processing NODE_5578_length_572_cov_19.614191:1-572 [pilon] NODE_947_length_1531_cov_20.127660:1-1531 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 706, Coverage: 51, minDepth: 13 [pilon] Confirmed 1371 of 1531 bases (89.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_947_length_1531_cov_20.127660:1-1531 [pilon] Processing NODE_1011_length_1489_cov_15.762427:1-1489 [pilon] NODE_14097_length_243_cov_13.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14097_length_243_cov_13.475410:1-243 [pilon] Processing NODE_11509_length_263_cov_29.161972:1-263 [pilon] NODE_4764_length_638_cov_22.237911:1-638 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 273, Coverage: 26, minDepth: 7 [pilon] Confirmed 374 of 638 bases (58.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4764_length_638_cov_22.237911:1-638 [pilon] Processing NODE_5493_length_578_cov_10.923414:1-578 [pilon] NODE_10342_length_312_cov_10.701571:1-312 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 312 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10342_length_312_cov_10.701571:1-312 [pilon] Processing NODE_11938_length_248_cov_16.905512:1-248 [pilon] NODE_4080_length_707_cov_23.790102:1-707 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 381, Coverage: 62, minDepth: 16 [pilon] Confirmed 543 of 707 bases (76.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4080_length_707_cov_23.790102:1-707 [pilon] Processing NODE_10237_length_315_cov_23.190722:1-315 [pilon] NODE_5416_length_583_cov_1.495671:1-583 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 294 of 583 bases (50.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5416_length_583_cov_1.495671:1-583 [pilon] Processing NODE_7473_length_444_cov_21.941176:1-444 [pilon] NODE_9293_length_354_cov_18.051502:1-354 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 100, Coverage: 13, minDepth: 5 [pilon] Confirmed 239 of 354 bases (67.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9293_length_354_cov_18.051502:1-354 [pilon] Processing NODE_8599_length_388_cov_23.936330:1-388 [pilon] NODE_631_length_1771_cov_2.429091:1-1771 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 125, Coverage: 8, minDepth: 5 [pilon] Confirmed 1377 of 1771 bases (77.75%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_631_length_1771_cov_2.429091:1-1771 [pilon] Processing NODE_7110_length_465_cov_11.223837:1-465 [pilon] NODE_15163_length_181_cov_17.733333:1-181 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 181 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15163_length_181_cov_17.733333:1-181 [pilon] Processing NODE_8799_length_377_cov_33.898438:1-377 [pilon] NODE_1721_length_1173_cov_1.827947:1-1173 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 59, Coverage: 6, minDepth: 5 [pilon] Confirmed 681 of 1173 bases (58.06%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1721_length_1173_cov_1.827947:1-1173 [pilon] Processing NODE_14402_length_243_cov_11.073770:1-243 [pilon] NODE_6704_length_490_cov_9.151762:1-490 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 75, Coverage: 9, minDepth: 5 [pilon] Confirmed 272 of 490 bases (55.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6704_length_490_cov_9.151762:1-490 [pilon] Processing NODE_12717_length_243_cov_26.008197:1-243 [pilon] NODE_3148_length_842_cov_19.228849:1-842 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 375, Coverage: 34, minDepth: 9 [pilon] Confirmed 651 of 842 bases (77.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3148_length_842_cov_19.228849:1-842 [pilon] Processing NODE_5141_length_606_cov_32.482474:1-606 [pilon] NODE_8472_length_395_cov_32.266423:1-395 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 223, Coverage: 19, minDepth: 5 [pilon] Confirmed 263 of 395 bases (66.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8472_length_395_cov_32.266423:1-395 [pilon] Processing NODE_3224_length_830_cov_2.963329:1-830 [pilon] NODE_10834_length_291_cov_13.758824:1-291 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 54, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 291 bases (44.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10834_length_291_cov_13.758824:1-291 [pilon] Processing NODE_291_length_2254_cov_16.993436:1-2254 [pilon] NODE_10494_length_305_cov_15.875000:1-305 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 65, Coverage: 3, minDepth: 5 [pilon] Confirmed 106 of 305 bases (34.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10494_length_305_cov_15.875000:1-305 [pilon] Processing NODE_11328_length_270_cov_21.536913:1-270 [pilon] NODE_13228_length_243_cov_20.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13228_length_243_cov_20.868852:1-243 [pilon] Processing NODE_11863_length_250_cov_34.984496:1-250 [pilon] NODE_4766_length_638_cov_12.959381:1-638 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 151, Coverage: 16, minDepth: 5 [pilon] Confirmed 571 of 638 bases (89.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4766_length_638_cov_12.959381:1-638 [pilon] Processing NODE_270_length_2295_cov_2.260350:1-2295 [pilon] NODE_6565_length_499_cov_3.743386:1-499 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 30, Coverage: 7, minDepth: 5 [pilon] Confirmed 288 of 499 bases (57.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6565_length_499_cov_3.743386:1-499 [pilon] Processing NODE_696_length_1706_cov_22.578549:1-1706 [pilon] NODE_10385_length_309_cov_18.952128:1-309 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 72, Coverage: 10, minDepth: 5 [pilon] Confirmed 243 of 309 bases (78.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10385_length_309_cov_18.952128:1-309 [pilon] Processing NODE_2128_length_1052_cov_4.187970:1-1052 [pilon] NODE_1259_length_1359_cov_18.506462:1-1359 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 597, Coverage: 42, minDepth: 11 [pilon] Confirmed 1026 of 1359 bases (75.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1259_length_1359_cov_18.506462:1-1359 [pilon] Processing NODE_6426_length_508_cov_27.271318:1-508 [pilon] NODE_7341_length_451_cov_14.445455:1-451 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 130, Coverage: 8, minDepth: 5 [pilon] Confirmed 199 of 451 bases (44.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7341_length_451_cov_14.445455:1-451 [pilon] NODE_10530_length_303_cov_23.912088:1-303 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 100, Coverage: 9, minDepth: 5 [pilon] Confirmed 211 of 303 bases (69.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10530_length_303_cov_23.912088:1-303 [pilon] Processing NODE_10389_length_309_cov_17.994681:1-309 [pilon] Processing NODE_1557_length_1237_cov_2.766129:1-1237 [pilon] NODE_4705_length_643_cov_1.936782:1-643 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 339 of 643 bases (52.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4705_length_643_cov_1.936782:1-643 [pilon] Processing NODE_4531_length_659_cov_1.947955:1-659 [pilon] NODE_1157_length_1415_cov_1.666924:1-1415 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 58, Coverage: 5, minDepth: 5 [pilon] Confirmed 600 of 1415 bases (42.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1157_length_1415_cov_1.666924:1-1415 [pilon] Processing NODE_12307_length_243_cov_32.991803:1-243 [pilon] NODE_14073_length_243_cov_13.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14073_length_243_cov_13.655738:1-243 [pilon] Processing NODE_994_length_1499_cov_21.420900:1-1499 [pilon] NODE_8558_length_390_cov_22.230483:1-390 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 133, Coverage: 12, minDepth: 5 [pilon] Confirmed 224 of 390 bases (57.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8558_length_390_cov_22.230483:1-390 [pilon] Processing NODE_5767_length_558_cov_12.132723:1-558 [pilon] NODE_8188_length_409_cov_1.277778:1-409 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 28 of 409 bases (6.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8188_length_409_cov_1.277778:1-409 [pilon] Processing NODE_8001_length_418_cov_12.851852:1-418 [pilon] NODE_3748_length_747_cov_29.263578:1-747 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 439, Coverage: 48, minDepth: 12 [pilon] Confirmed 677 of 747 bases (90.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3748_length_747_cov_29.263578:1-747 [pilon] Processing NODE_10240_length_315_cov_20.850515:1-315 [pilon] NODE_9085_length_362_cov_36.348548:1-362 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 203, Coverage: 22, minDepth: 6 [pilon] Confirmed 312 of 362 bases (86.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9085_length_362_cov_36.348548:1-362 [pilon] Processing NODE_2960_length_881_cov_2.223684:1-881 [pilon] NODE_1011_length_1489_cov_15.762427:1-1489 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 528, Coverage: 45, minDepth: 11 [pilon] Confirmed 1169 of 1489 bases (78.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1011_length_1489_cov_15.762427:1-1489 [pilon] Processing NODE_2726_length_923_cov_3.980050:1-923 [pilon] NODE_5578_length_572_cov_19.614191:1-572 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 210, Coverage: 33, minDepth: 8 [pilon] Confirmed 436 of 572 bases (76.22%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5578_length_572_cov_19.614191:1-572 [pilon] Processing NODE_4338_length_677_cov_3.762590:1-677 [pilon] NODE_11509_length_263_cov_29.161972:1-263 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 81, Coverage: 7, minDepth: 5 [pilon] Confirmed 190 of 263 bases (72.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11509_length_263_cov_29.161972:1-263 [pilon] Processing NODE_4870_length_629_cov_17.828740:1-629 [pilon] NODE_5493_length_578_cov_10.923414:1-578 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 116, Coverage: 13, minDepth: 5 [pilon] Confirmed 388 of 578 bases (67.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5493_length_578_cov_10.923414:1-578 [pilon] Processing NODE_5652_length_567_cov_2.244395:1-567 [pilon] NODE_11938_length_248_cov_16.905512:1-248 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 48, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 248 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11938_length_248_cov_16.905512:1-248 [pilon] Processing NODE_9042_length_364_cov_16.687243:1-364 [pilon] NODE_696_length_1706_cov_22.578549:1-1706 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 976, Coverage: 45, minDepth: 11 [pilon] Confirmed 1403 of 1706 bases (82.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_696_length_1706_cov_22.578549:1-1706 [pilon] Processing NODE_12042_length_246_cov_7.376000:1-246 [pilon] NODE_10237_length_315_cov_23.190722:1-315 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 102, Coverage: 11, minDepth: 5 [pilon] Confirmed 233 of 315 bases (73.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10237_length_315_cov_23.190722:1-315 [pilon] Processing NODE_12819_length_243_cov_24.836066:1-243 [pilon] NODE_7473_length_444_cov_21.941176:1-444 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 174, Coverage: 10, minDepth: 5 [pilon] Confirmed 228 of 444 bases (51.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7473_length_444_cov_21.941176:1-444 [pilon] Processing NODE_14578_length_243_cov_9.614754:1-243 [pilon] NODE_7110_length_465_cov_11.223837:1-465 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 85, Coverage: 14, minDepth: 5 [pilon] Confirmed 375 of 465 bases (80.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7110_length_465_cov_11.223837:1-465 [pilon] Processing NODE_13037_length_243_cov_22.557377:1-243 [pilon] NODE_6426_length_508_cov_27.271318:1-508 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 285, Coverage: 41, minDepth: 10 [pilon] Confirmed 363 of 508 bases (71.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6426_length_508_cov_27.271318:1-508 [pilon] Processing NODE_7711_length_432_cov_13.800643:1-432 [pilon] NODE_12717_length_243_cov_26.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12717_length_243_cov_26.008197:1-243 [pilon] Processing NODE_8228_length_407_cov_16.737762:1-407 [pilon] NODE_11328_length_270_cov_21.536913:1-270 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 63, Coverage: 5, minDepth: 5 [pilon] Confirmed 205 of 270 bases (75.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11328_length_270_cov_21.536913:1-270 [pilon] Processing NODE_11121_length_279_cov_14.183544:1-279 [pilon] NODE_8599_length_388_cov_23.936330:1-388 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 154, Coverage: 21, minDepth: 5 [pilon] Confirmed 345 of 388 bases (88.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8599_length_388_cov_23.936330:1-388 [pilon] Processing NODE_6160_length_527_cov_71.827586:1-527 [pilon] NODE_8799_length_377_cov_33.898438:1-377 log: [pilon] NODE_3224_length_830_cov_2.963329:1-830 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 48, Coverage: 7, minDepth: 5 [pilon] Confirmed 539 of 830 bases (64.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3224_length_830_cov_2.963329:1-830 [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 153, Coverage: 20, minDepth: 5 [pilon] Confirmed 250 of 377 bases (66.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8799_length_377_cov_33.898438:1-377 [pilon] Processing NODE_10694_length_298_cov_13.322034:1-298 [pilon] Processing NODE_6880_length_479_cov_10.086592:1-479 [pilon] NODE_14402_length_243_cov_11.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14402_length_243_cov_11.073770:1-243 [pilon] Processing NODE_325_length_2177_cov_1.982490:1-2177 [pilon] NODE_5141_length_606_cov_32.482474:1-606 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 345, Coverage: 45, minDepth: 11 [pilon] Confirmed 546 of 606 bases (90.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5141_length_606_cov_32.482474:1-606 [pilon] Processing NODE_7295_length_454_cov_18.798799:1-454 [pilon] NODE_270_length_2295_cov_2.260350:1-2295 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 148, Coverage: 8, minDepth: 5 [pilon] Confirmed 1742 of 2295 bases (75.90%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_270_length_2295_cov_2.260350:1-2295 [pilon] Processing NODE_8934_length_369_cov_22.088710:1-369 [pilon] NODE_11863_length_250_cov_34.984496:1-250 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 100, Coverage: 7, minDepth: 5 [pilon] Confirmed 165 of 250 bases (66.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11863_length_250_cov_34.984496:1-250 [pilon] Processing NODE_493_length_1916_cov_2.577716:1-1916 [pilon] NODE_291_length_2254_cov_16.993436:1-2254 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 882, Coverage: 46, minDepth: 12 [pilon] Confirmed 1897 of 2254 bases (84.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_291_length_2254_cov_16.993436:1-2254 [pilon] Processing NODE_10754_length_295_cov_14.431034:1-295 [pilon] NODE_4531_length_659_cov_1.947955:1-659 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 328 of 659 bases (49.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4531_length_659_cov_1.947955:1-659 [pilon] Processing NODE_6401_length_510_cov_17.596401:1-510 [pilon] NODE_2128_length_1052_cov_4.187970:1-1052 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 97, Coverage: 11, minDepth: 5 [pilon] Confirmed 876 of 1052 bases (83.27%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2128_length_1052_cov_4.187970:1-1052 [pilon] Processing NODE_8515_length_393_cov_16.819853:1-393 [pilon] NODE_1557_length_1237_cov_2.766129:1-1237 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 89, Coverage: 8, minDepth: 5 [pilon] Confirmed 620 of 1237 bases (50.12%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1557_length_1237_cov_2.766129:1-1237 [pilon] Processing NODE_2203_length_1033_cov_2.358553:1-1033 [pilon] NODE_10389_length_309_cov_17.994681:1-309 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 62, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 309 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10389_length_309_cov_17.994681:1-309 [pilon] Processing NODE_13737_length_243_cov_16.122951:1-243 [pilon] NODE_12307_length_243_cov_32.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12307_length_243_cov_32.991803:1-243 [pilon] Processing NODE_14665_length_243_cov_8.901639:1-243 [pilon] NODE_994_length_1499_cov_21.420900:1-1499 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 684, Coverage: 53, minDepth: 13 [pilon] Confirmed 1097 of 1499 bases (73.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_994_length_1499_cov_21.420900:1-1499 [pilon] Processing NODE_15241_length_131_cov_24.300000:1-131 [pilon] NODE_5767_length_558_cov_12.132723:1-558 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 110, Coverage: 14, minDepth: 5 [pilon] Confirmed 312 of 558 bases (55.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5767_length_558_cov_12.132723:1-558 [pilon] Processing NODE_5981_length_542_cov_33.228029:1-542 [pilon] NODE_10240_length_315_cov_20.850515:1-315 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 104, Coverage: 3, minDepth: 5 [pilon] Confirmed 117 of 315 bases (37.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10240_length_315_cov_20.850515:1-315 [pilon] Processing NODE_10323_length_312_cov_21.387435:1-312 [pilon] NODE_8001_length_418_cov_12.851852:1-418 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 68, Coverage: 6, minDepth: 5 [pilon] Confirmed 184 of 418 bases (44.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8001_length_418_cov_12.851852:1-418 [pilon] Processing NODE_8134_length_411_cov_23.586207:1-411 [pilon] NODE_2960_length_881_cov_2.223684:1-881 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 54, Coverage: 8, minDepth: 5 [pilon] Confirmed 648 of 881 bases (73.55%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2960_length_881_cov_2.223684:1-881 [pilon] Processing NODE_5620_length_569_cov_3.589286:1-569 [pilon] NODE_2726_length_923_cov_3.980050:1-923 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 82, Coverage: 11, minDepth: 5 [pilon] Confirmed 750 of 923 bases (81.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2726_length_923_cov_3.980050:1-923 [pilon] Processing NODE_5049_length_615_cov_4.040486:1-615 [pilon] NODE_4338_length_677_cov_3.762590:1-677 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 57, Coverage: 11, minDepth: 5 [pilon] Confirmed 578 of 677 bases (85.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4338_length_677_cov_3.762590:1-677 [pilon] Processing NODE_8636_length_386_cov_19.343396:1-386 [pilon] NODE_12819_length_243_cov_24.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12819_length_243_cov_24.836066:1-243 [pilon] NODE_8228_length_407_cov_16.737762:1-407 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 120, Coverage: 2, minDepth: 5 [pilon] Confirmed 92 of 407 bases (22.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8228_length_407_cov_16.737762:1-407 [pilon] Processing NODE_1736_length_1167_cov_24.129063:1-1167 [pilon] NODE_5652_length_567_cov_2.244395:1-567 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 27, Coverage: 6, minDepth: 5 [pilon] Confirmed 319 of 567 bases (56.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5652_length_567_cov_2.244395:1-567 [pilon] Processing NODE_8244_length_407_cov_0.828671:1-407 [pilon] NODE_9042_length_364_cov_16.687243:1-364 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 95, Coverage: 11, minDepth: 5 [pilon] Confirmed 247 of 364 bases (67.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9042_length_364_cov_16.687243:1-364 [pilon] Processing NODE_14146_length_243_cov_13.155738:1-243 [pilon] NODE_12042_length_246_cov_7.376000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 23, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12042_length_246_cov_7.376000:1-246 [pilon] Processing NODE_10898_length_288_cov_20.604790:1-288 [pilon] NODE_14578_length_243_cov_9.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14578_length_243_cov_9.614754:1-243 [pilon] Processing NODE_2868_length_899_cov_6.389460:1-899 [pilon] NODE_4870_length_629_cov_17.828740:1-629 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 252, Coverage: 30, minDepth: 8 [pilon] Confirmed 583 of 629 bases (92.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4870_length_629_cov_17.828740:1-629 [pilon] Processing NODE_1705_length_1178_cov_22.210974:1-1178 [pilon] NODE_7711_length_432_cov_13.800643:1-432 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 94, Coverage: 15, minDepth: 5 [pilon] Confirmed 299 of 432 bases (69.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7711_length_432_cov_13.800643:1-432 [pilon] Processing NODE_11033_length_282_cov_16.732919:1-282 [pilon] NODE_13037_length_243_cov_22.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13037_length_243_cov_22.557377:1-243 [pilon] Processing NODE_1004_length_1491_cov_12.904380:1-1491 [pilon] NODE_10754_length_295_cov_14.431034:1-295 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 55, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 295 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10754_length_295_cov_14.431034:1-295 [pilon] Processing NODE_5571_length_573_cov_2.075221:1-573 [pilon] NODE_11121_length_279_cov_14.183544:1-279 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 55, Coverage: 3, minDepth: 5 [pilon] Confirmed 57 of 279 bases (20.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11121_length_279_cov_14.183544:1-279 [pilon] Processing NODE_13941_length_243_cov_14.565574:1-243 [pilon] NODE_10694_length_298_cov_13.322034:1-298 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 55, Coverage: 9, minDepth: 5 [pilon] Confirmed 230 of 298 bases (77.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10694_length_298_cov_13.322034:1-298 [pilon] Processing NODE_6760_length_486_cov_0.553425:1-486 [pilon] NODE_13737_length_243_cov_16.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13737_length_243_cov_16.122951:1-243 [pilon] Processing NODE_11969_length_246_cov_32.704000:1-246 [pilon] NODE_6880_length_479_cov_10.086592:1-479 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 88, Coverage: 12, minDepth: 5 [pilon] Confirmed 386 of 479 bases (80.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6880_length_479_cov_10.086592:1-479 [pilon] NODE_5620_length_569_cov_3.589286:1-569 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 40, Coverage: 8, minDepth: 5 [pilon] Confirmed 292 of 569 bases (51.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5620_length_569_cov_3.589286:1-569 [pilon] NODE_8934_length_369_cov_22.088710:1-369 log: [pilon] Processing NODE_13144_length_243_cov_21.549180:1-243 [pilon] Processing NODE_10507_length_304_cov_18.628415:1-304 [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 123, Coverage: 2, minDepth: 5 [pilon] Confirmed 105 of 369 bases (28.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8934_length_369_cov_22.088710:1-369 [pilon] Processing NODE_11250_length_273_cov_24.368421:1-273 [pilon] NODE_2203_length_1033_cov_2.358553:1-1033 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 67, Coverage: 8, minDepth: 5 [pilon] Confirmed 691 of 1033 bases (66.89%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2203_length_1033_cov_2.358553:1-1033 [pilon] Processing NODE_6247_length_521_cov_8.562500:1-521 [pilon] NODE_6401_length_510_cov_17.596401:1-510 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 164, Coverage: 22, minDepth: 6 [pilon] Confirmed 386 of 510 bases (75.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6401_length_510_cov_17.596401:1-510 [pilon] Processing NODE_7269_length_456_cov_16.074627:1-456 [pilon] NODE_8515_length_393_cov_16.819853:1-393 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 76, Coverage: 7, minDepth: 5 [pilon] Confirmed 209 of 393 bases (53.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8515_length_393_cov_16.819853:1-393 [pilon] Processing NODE_1665_length_1195_cov_18.026071:1-1195 [pilon] NODE_5981_length_542_cov_33.228029:1-542 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 315, Coverage: 39, minDepth: 10 [pilon] Confirmed 493 of 542 bases (90.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5981_length_542_cov_33.228029:1-542 [pilon] Processing NODE_624_length_1778_cov_11.070006:1-1778 [pilon] NODE_15241_length_131_cov_24.300000:1-131 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 131 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15241_length_131_cov_24.300000:1-131 [pilon] Processing NODE_7240_length_458_cov_1.347181:1-458 [pilon] NODE_325_length_2177_cov_1.982490:1-2177 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 114, Coverage: 7, minDepth: 5 [pilon] Confirmed 1172 of 2177 bases (53.84%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_325_length_2177_cov_1.982490:1-2177 [pilon] Processing NODE_1645_length_1201_cov_12.885185:1-1201 [pilon] NODE_8134_length_411_cov_23.586207:1-411 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 153, Coverage: 23, minDepth: 6 [pilon] Confirmed 302 of 411 bases (73.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8134_length_411_cov_23.586207:1-411 [pilon] NODE_7295_length_454_cov_18.798799:1-454 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 160, Coverage: 20, minDepth: 5 [pilon] Confirmed 292 of 454 bases (64.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7295_length_454_cov_18.798799:1-454 [pilon] Processing NODE_10667_length_299_cov_20.353933:1-299 [pilon] Processing NODE_13948_length_243_cov_14.524590:1-243 [pilon] NODE_493_length_1916_cov_2.577716:1-1916 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 125, Coverage: 8, minDepth: 5 [pilon] Confirmed 1479 of 1916 bases (77.19%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_493_length_1916_cov_2.577716:1-1916 [pilon] Processing NODE_12744_length_243_cov_25.647541:1-243 [pilon] NODE_10323_length_312_cov_21.387435:1-312 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 89, Coverage: 7, minDepth: 5 [pilon] Confirmed 209 of 312 bases (66.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10323_length_312_cov_21.387435:1-312 [pilon] Processing NODE_1256_length_1360_cov_35.378531:1-1360 [pilon] NODE_6160_length_527_cov_71.827586:1-527 log: [pilon] frags shovill.bam: coverage 111 [pilon] Total Reads: 647, Coverage: 111, minDepth: 28 [pilon] Confirmed 457 of 527 bases (86.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6160_length_527_cov_71.827586:1-527 [pilon] Processing NODE_13747_length_243_cov_16.081967:1-243 [pilon] NODE_5049_length_615_cov_4.040486:1-615 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 51, Coverage: 11, minDepth: 5 [pilon] Confirmed 447 of 615 bases (72.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5049_length_615_cov_4.040486:1-615 [pilon] Processing NODE_8691_length_383_cov_8.935115:1-383 [pilon] NODE_14665_length_243_cov_8.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14665_length_243_cov_8.901639:1-243 [pilon] Processing NODE_10539_length_303_cov_19.010989:1-303 [pilon] NODE_1736_length_1167_cov_24.129063:1-1167 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 630, Coverage: 55, minDepth: 14 [pilon] Confirmed 1069 of 1167 bases (91.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1736_length_1167_cov_24.129063:1-1167 [pilon] Processing NODE_12059_length_245_cov_21.790323:1-245 [pilon] NODE_8636_length_386_cov_19.343396:1-386 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 157, Coverage: 8, minDepth: 5 [pilon] Confirmed 299 of 386 bases (77.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8636_length_386_cov_19.343396:1-386 [pilon] Processing NODE_6905_length_477_cov_17.342697:1-477 [pilon] NODE_10898_length_288_cov_20.604790:1-288 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 58, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10898_length_288_cov_20.604790:1-288 [pilon] Processing NODE_9902_length_330_cov_15.928230:1-330 [pilon] NODE_13941_length_243_cov_14.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13941_length_243_cov_14.565574:1-243 [pilon] Processing NODE_3210_length_831_cov_20.261972:1-831 [pilon] NODE_14146_length_243_cov_13.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14146_length_243_cov_13.155738:1-243 [pilon] Processing NODE_4029_length_713_cov_1.883446:1-713 [pilon] NODE_8244_length_407_cov_0.828671:1-407 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 407 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8244_length_407_cov_0.828671:1-407 [pilon] Processing NODE_417_length_2018_cov_13.830785:1-2018 [pilon] NODE_2868_length_899_cov_6.389460:1-899 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 130, Coverage: 12, minDepth: 5 [pilon] Confirmed 630 of 899 bases (70.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2868_length_899_cov_6.389460:1-899 [pilon] Processing NODE_14369_length_243_cov_11.311475:1-243 [pilon] NODE_1004_length_1491_cov_12.904380:1-1491 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 427, Coverage: 22, minDepth: 6 [pilon] Confirmed 1179 of 1491 bases (79.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1004_length_1491_cov_12.904380:1-1491 [pilon] Processing NODE_6632_length_495_cov_14.088235:1-495 [pilon] NODE_1705_length_1178_cov_22.210974:1-1178 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 604, Coverage: 47, minDepth: 12 [pilon] Confirmed 789 of 1178 bases (66.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1705_length_1178_cov_22.210974:1-1178 [pilon] Processing NODE_10517_length_304_cov_8.693989:1-304 [pilon] NODE_624_length_1778_cov_11.070006:1-1778 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 458, Coverage: 26, minDepth: 7 [pilon] Confirmed 1363 of 1778 bases (76.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_624_length_1778_cov_11.070006:1-1778 [pilon] Processing NODE_1982_length_1092_cov_1.526262:1-1092 [pilon] NODE_13144_length_243_cov_21.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13144_length_243_cov_21.549180:1-243 [pilon] Processing NODE_13055_length_243_cov_22.360656:1-243 [pilon] NODE_11033_length_282_cov_16.732919:1-282 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 54, Coverage: 7, minDepth: 5 [pilon] Confirmed 197 of 282 bases (69.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11033_length_282_cov_16.732919:1-282 [pilon] Processing NODE_246_length_2351_cov_8.471300:1-2351 [pilon] NODE_11250_length_273_cov_24.368421:1-273 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 75, Coverage: 11, minDepth: 5 [pilon] Confirmed 226 of 273 bases (82.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11250_length_273_cov_24.368421:1-273 [pilon] Processing NODE_10935_length_287_cov_11.560241:1-287 [pilon] NODE_6760_length_486_cov_0.553425:1-486 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 8, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 486 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_5571_length_573_cov_2.075221:1-573 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 36, Coverage: 8, minDepth: 5 [pilon] Confirmed 394 of 573 bases (68.76%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5571_length_573_cov_2.075221:1-573 [pilon] Finished processing NODE_6760_length_486_cov_0.553425:1-486 [pilon] Processing NODE_1915_length_1108_cov_1.705167:1-1108 [pilon] Processing NODE_5665_length_566_cov_1.269663:1-566 [pilon] NODE_10507_length_304_cov_18.628415:1-304 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 81, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 304 bases (42.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10507_length_304_cov_18.628415:1-304 [pilon] Processing NODE_2747_length_918_cov_57.164366:1-918 [pilon] NODE_7240_length_458_cov_1.347181:1-458 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 26 of 458 bases (5.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7240_length_458_cov_1.347181:1-458 [pilon] Processing NODE_7112_length_465_cov_8.488372:1-465 [pilon] NODE_13948_length_243_cov_14.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13948_length_243_cov_14.524590:1-243 [pilon] Processing NODE_9052_length_363_cov_31.128099:1-363 [pilon] NODE_9902_length_330_cov_15.928230:1-330 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 66, Coverage: 7, minDepth: 5 [pilon] Confirmed 221 of 330 bases (66.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9902_length_330_cov_15.928230:1-330 [pilon] Processing NODE_8817_length_375_cov_66.877953:1-375 [pilon] NODE_10667_length_299_cov_20.353933:1-299 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 62, Coverage: 7, minDepth: 5 [pilon] Confirmed 191 of 299 bases (63.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10667_length_299_cov_20.353933:1-299 [pilon] Processing NODE_4797_length_635_cov_1.336576:1-635 [pilon] NODE_11969_length_246_cov_32.704000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 86, Coverage: 3, minDepth: 5 [pilon] Confirmed 66 of 246 bases (26.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11969_length_246_cov_32.704000:1-246 [pilon] Processing NODE_11065_length_280_cov_30.855346:1-280 [pilon] NODE_6247_length_521_cov_8.562500:1-521 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 94, Coverage: 2, minDepth: 5 [pilon] Confirmed 124 of 521 bases (23.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6247_length_521_cov_8.562500:1-521 [pilon] Processing NODE_6975_length_473_cov_18.573864:1-473 [pilon] NODE_7269_length_456_cov_16.074627:1-456 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 119, Coverage: 7, minDepth: 5 [pilon] Confirmed 219 of 456 bases (48.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7269_length_456_cov_16.074627:1-456 [pilon] Processing NODE_11068_length_280_cov_24.484277:1-280 [pilon] NODE_1665_length_1195_cov_18.026071:1-1195 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 421, Coverage: 45, minDepth: 11 [pilon] Confirmed 856 of 1195 bases (71.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1665_length_1195_cov_18.026071:1-1195 [pilon] Processing NODE_900_length_1560_cov_17.057679:1-1560 [pilon] NODE_1645_length_1201_cov_12.885185:1-1201 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 326, Coverage: 32, minDepth: 8 [pilon] Confirmed 1049 of 1201 bases (87.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1645_length_1201_cov_12.885185:1-1201 [pilon] Processing NODE_421_length_2010_cov_1.926416:1-2010 [pilon] NODE_12744_length_243_cov_25.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12744_length_243_cov_25.647541:1-243 [pilon] Processing NODE_12308_length_243_cov_32.959016:1-243 [pilon] NODE_13747_length_243_cov_16.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13747_length_243_cov_16.081967:1-243 [pilon] Processing NODE_8847_length_374_cov_88.924901:1-374 [pilon] NODE_10539_length_303_cov_19.010989:1-303 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 64, Coverage: 3, minDepth: 5 [pilon] Confirmed 118 of 303 bases (38.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10539_length_303_cov_19.010989:1-303 [pilon] Processing NODE_522_length_1895_cov_14.264938:1-1895 [pilon] NODE_8691_length_383_cov_8.935115:1-383 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 59, Coverage: 4, minDepth: 5 [pilon] Confirmed 187 of 383 bases (48.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8691_length_383_cov_8.935115:1-383 [pilon] Processing NODE_9346_length_352_cov_18.225108:1-352 [pilon] NODE_12059_length_245_cov_21.790323:1-245 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 57, Coverage: 6, minDepth: 5 [pilon] Confirmed 174 of 245 bases (71.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12059_length_245_cov_21.790323:1-245 [pilon] Processing NODE_8411_length_399_cov_14.960432:1-399 [pilon] NODE_6905_length_477_cov_17.342697:1-477 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 129, Coverage: 19, minDepth: 5 [pilon] Confirmed 307 of 477 bases (64.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6905_length_477_cov_17.342697:1-477 [pilon] Processing NODE_5848_length_552_cov_1.781903:1-552 [pilon] NODE_3210_length_831_cov_20.261972:1-831 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 338, Coverage: 23, minDepth: 6 [pilon] Confirmed 551 of 831 bases (66.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3210_length_831_cov_20.261972:1-831 [pilon] Processing NODE_10625_length_300_cov_20.497207:1-300 [pilon] NODE_1256_length_1360_cov_35.378531:1-1360 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 1096, Coverage: 61, minDepth: 15 [pilon] Confirmed 1243 of 1360 bases (91.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1256_length_1360_cov_35.378531:1-1360 [pilon] Processing NODE_4664_length_647_cov_2.954373:1-647 [pilon] NODE_4029_length_713_cov_1.883446:1-713 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 33, Coverage: 6, minDepth: 5 [pilon] Confirmed 389 of 713 bases (54.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4029_length_713_cov_1.883446:1-713 [pilon] Processing NODE_7508_length_443_cov_1.204969:1-443 [pilon] NODE_9052_length_363_cov_31.128099:1-363 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 156, Coverage: 20, minDepth: 5 [pilon] Confirmed 283 of 363 bases (77.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9052_length_363_cov_31.128099:1-363 [pilon] Processing NODE_12193_length_243_cov_37.024590:1-243 [pilon] NODE_14369_length_243_cov_11.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14369_length_243_cov_11.311475:1-243 [pilon] Processing NODE_10376_length_309_cov_29.851064:1-309 [pilon] NODE_6632_length_495_cov_14.088235:1-495 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 115, Coverage: 13, minDepth: 5 [pilon] Confirmed 322 of 495 bases (65.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6632_length_495_cov_14.088235:1-495 [pilon] Processing NODE_7645_length_435_cov_29.299363:1-435 [pilon] NODE_1982_length_1092_cov_1.526262:1-1092 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 55, Coverage: 7, minDepth: 5 [pilon] Confirmed 704 of 1092 bases (64.47%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1982_length_1092_cov_1.526262:1-1092 [pilon] Processing NODE_2438_length_980_cov_24.426077:1-980 [pilon] NODE_10517_length_304_cov_8.693989:1-304 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 38, Coverage: 2, minDepth: 5 [pilon] Confirmed 20 of 304 bases (6.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10517_length_304_cov_8.693989:1-304 [pilon] Processing NODE_808_length_1623_cov_2.406791:1-1623 [pilon] NODE_8847_length_374_cov_88.924901:1-374 log: [pilon] frags shovill.bam: coverage 83 [pilon] Total Reads: 506, Coverage: 83, minDepth: 21 [pilon] Confirmed 330 of 374 bases (88.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8847_length_374_cov_88.924901:1-374 [pilon] Processing NODE_4984_length_620_cov_0.691383:1-620 [pilon] NODE_4797_length_635_cov_1.336576:1-635 log: [pilon] NODE_10935_length_287_cov_11.560241:1-287 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 35, Coverage: 10, minDepth: 5 [pilon] Confirmed 241 of 287 bases (83.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 261 of 635 bases (41.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_417_length_2018_cov_13.830785:1-2018 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 662, Coverage: 39, minDepth: 10 [pilon] Confirmed 1764 of 2018 bases (87.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_417_length_2018_cov_13.830785:1-2018 [pilon] Finished processing NODE_10935_length_287_cov_11.560241:1-287 [pilon] Processing NODE_2478_length_971_cov_1.942353:1-971 [pilon] Finished processing NODE_4797_length_635_cov_1.336576:1-635 [pilon] Processing NODE_449_length_1973_cov_21.169006:1-1973 [pilon] Processing NODE_14573_length_243_cov_9.672131:1-243 [pilon] NODE_5665_length_566_cov_1.269663:1-566 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 300 of 566 bases (53.00%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5665_length_566_cov_1.269663:1-566 [pilon] Processing NODE_12490_length_243_cov_29.303279:1-243 [pilon] Processing NODE_9115_length_360_cov_31.422594:1-360 [pilon] NODE_246_length_2351_cov_8.471300:1-2351 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 450, Coverage: 25, minDepth: 6 [pilon] Confirmed 1797 of 2351 bases (76.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_246_length_2351_cov_8.471300:1-2351 [pilon] Processing NODE_2196_length_1034_cov_13.470975:1-1034 [pilon] NODE_13055_length_243_cov_22.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13055_length_243_cov_22.360656:1-243 [pilon] NODE_12308_length_243_cov_32.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12308_length_243_cov_32.959016:1-243 [pilon] Processing NODE_11022_length_282_cov_27.291925:1-282 [pilon] Processing NODE_5371_length_586_cov_20.886022:1-586 [pilon] NODE_2747_length_918_cov_57.164366:1-918 log: [pilon] frags shovill.bam: coverage 115 [pilon] Total Reads: 1031, Coverage: 115, minDepth: 29 [pilon] Confirmed 847 of 918 bases (92.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2747_length_918_cov_57.164366:1-918 [pilon] Processing NODE_5237_length_597_cov_18.289916:1-597 [pilon] NODE_11068_length_280_cov_24.484277:1-280 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 87, Coverage: 8, minDepth: 5 [pilon] Confirmed 203 of 280 bases (72.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11068_length_280_cov_24.484277:1-280 [pilon] NODE_7112_length_465_cov_8.488372:1-465 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 58, Coverage: 12, minDepth: 5 [pilon] Confirmed 337 of 465 bases (72.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7112_length_465_cov_8.488372:1-465 [pilon] Processing NODE_4041_length_711_cov_16.140678:1-711 [pilon] NODE_11065_length_280_cov_30.855346:1-280 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 107, Coverage: 10, minDepth: 5 [pilon] Confirmed 207 of 280 bases (73.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11065_length_280_cov_30.855346:1-280 [pilon] Processing NODE_12547_length_243_cov_28.360656:1-243 [pilon] NODE_6975_length_473_cov_18.573864:1-473 log: [pilon] NODE_9346_length_352_cov_18.225108:1-352 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 87, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 352 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 161, Coverage: 14, minDepth: 5 [pilon] Confirmed 206 of 473 bases (43.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6975_length_473_cov_18.573864:1-473 [pilon] Finished processing NODE_9346_length_352_cov_18.225108:1-352 [pilon] Processing NODE_3352_length_805_cov_15.994152:1-805 [pilon] Processing NODE_10277_length_314_cov_29.404145:1-314 [pilon] NODE_421_length_2010_cov_1.926416:1-2010 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 104, Coverage: 7, minDepth: 5 [pilon] Confirmed 1084 of 2010 bases (53.93%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_421_length_2010_cov_1.926416:1-2010 [pilon] Processing NODE_2418_length_987_cov_4.408776:1-987 [pilon] NODE_1915_length_1108_cov_1.705167:1-1108 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 64, Coverage: 7, minDepth: 5 [pilon] Confirmed 838 of 1108 bases (75.63%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1915_length_1108_cov_1.705167:1-1108 [pilon] Processing NODE_2621_length_942_cov_20.585871:1-942 [pilon] NODE_8817_length_375_cov_66.877953:1-375 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 361, Coverage: 69, minDepth: 17 [pilon] Confirmed 328 of 375 bases (87.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8817_length_375_cov_66.877953:1-375 [pilon] Processing NODE_6457_length_507_cov_0.707254:1-507 [pilon] NODE_522_length_1895_cov_14.264938:1-1895 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 619, Coverage: 37, minDepth: 9 [pilon] Confirmed 1580 of 1895 bases (83.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_522_length_1895_cov_14.264938:1-1895 [pilon] Processing NODE_6433_length_508_cov_1.196382:1-508 [pilon] NODE_900_length_1560_cov_17.057679:1-1560 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 624, Coverage: 35, minDepth: 9 [pilon] Confirmed 1359 of 1560 bases (87.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_900_length_1560_cov_17.057679:1-1560 [pilon] Processing NODE_6769_length_485_cov_9.873626:1-485 [pilon] NODE_8411_length_399_cov_14.960432:1-399 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 89, Coverage: 11, minDepth: 5 [pilon] Confirmed 240 of 399 bases (60.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8411_length_399_cov_14.960432:1-399 [pilon] Processing NODE_942_length_1533_cov_45.223796:1-1533 [pilon] NODE_5848_length_552_cov_1.781903:1-552 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 232 of 552 bases (42.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5848_length_552_cov_1.781903:1-552 [pilon] Processing NODE_10677_length_299_cov_12.713483:1-299 [pilon] NODE_7508_length_443_cov_1.204969:1-443 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 119 of 443 bases (26.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7508_length_443_cov_1.204969:1-443 [pilon] Processing NODE_12629_length_243_cov_27.204918:1-243 [pilon] NODE_10625_length_300_cov_20.497207:1-300 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 89, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 300 bases (43.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10625_length_300_cov_20.497207:1-300 [pilon] Processing NODE_6738_length_487_cov_49.997268:1-487 [pilon] NODE_4664_length_647_cov_2.954373:1-647 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 455 of 647 bases (70.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4664_length_647_cov_2.954373:1-647 [pilon] Processing NODE_12889_length_243_cov_24.172131:1-243 [pilon] NODE_12193_length_243_cov_37.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 93, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12193_length_243_cov_37.024590:1-243 [pilon] Processing NODE_7360_length_450_cov_16.714286:1-450 [pilon] NODE_10376_length_309_cov_29.851064:1-309 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 121, Coverage: 13, minDepth: 5 [pilon] Confirmed 236 of 309 bases (76.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10376_length_309_cov_29.851064:1-309 [pilon] Processing NODE_576_length_1830_cov_27.787595:1-1830 [pilon] NODE_7645_length_435_cov_29.299363:1-435 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 186, Coverage: 46, minDepth: 12 [pilon] Confirmed 395 of 435 bases (90.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7645_length_435_cov_29.299363:1-435 [pilon] Processing NODE_12927_length_243_cov_23.721311:1-243 [pilon] NODE_14573_length_243_cov_9.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14573_length_243_cov_9.672131:1-243 [pilon] Processing NODE_2336_length_1003_cov_20.337868:1-1003 [pilon] NODE_4984_length_620_cov_0.691383:1-620 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 296 of 620 bases (47.74%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4984_length_620_cov_0.691383:1-620 [pilon] NODE_12490_length_243_cov_29.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12490_length_243_cov_29.303279:1-243 [pilon] Processing NODE_10144_length_320_cov_13.326633:1-320 [pilon] Processing NODE_4909_length_625_cov_21.380952:1-625 [pilon] NODE_808_length_1623_cov_2.406791:1-1623 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 103, Coverage: 8, minDepth: 5 [pilon] Confirmed 921 of 1623 bases (56.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_808_length_1623_cov_2.406791:1-1623 [pilon] NODE_9115_length_360_cov_31.422594:1-360 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 105, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 360 bases (36.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9115_length_360_cov_31.422594:1-360 [pilon] Processing NODE_14590_length_243_cov_9.532787:1-243 [pilon] NODE_2438_length_980_cov_24.426077:1-980 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 521, Coverage: 43, minDepth: 11 [pilon] Confirmed 770 of 980 bases (78.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2438_length_980_cov_24.426077:1-980 [pilon] Processing NODE_4511_length_660_cov_46.578850:1-660 [pilon] NODE_449_length_1973_cov_21.169006:1-1973 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 993, Coverage: 42, minDepth: 11 [pilon] Confirmed 1806 of 1973 bases (91.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_449_length_1973_cov_21.169006:1-1973 [pilon] Processing NODE_1591_length_1221_cov_39.890000:1-1221 [pilon] NODE_2478_length_971_cov_1.942353:1-971 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 596 of 971 bases (61.38%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2478_length_971_cov_1.942353:1-971 [pilon] Processing NODE_9632_length_340_cov_16.552511:1-340 [pilon] NODE_2621_length_942_cov_20.585871:1-942 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 442, Coverage: 49, minDepth: 12 [pilon] Confirmed 651 of 942 bases (69.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2621_length_942_cov_20.585871:1-942 [pilon] Processing NODE_11982_length_246_cov_26.472000:1-246 [pilon] NODE_2196_length_1034_cov_13.470975:1-1034 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 334, Coverage: 27, minDepth: 7 [pilon] Confirmed 699 of 1034 bases (67.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2196_length_1034_cov_13.470975:1-1034 [pilon] Processing NODE_11200_length_276_cov_12.845161:1-276 [pilon] NODE_10277_length_314_cov_29.404145:1-314 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 128, Coverage: 12, minDepth: 5 [pilon] Confirmed 232 of 314 bases (73.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10277_length_314_cov_29.404145:1-314 [pilon] Processing NODE_2934_length_885_cov_10.506545:1-885 [pilon] NODE_12629_length_243_cov_27.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12629_length_243_cov_27.204918:1-243 [pilon] Processing NODE_2807_length_908_cov_16.087675:1-908 [pilon] NODE_4041_length_711_cov_16.140678:1-711 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 235, Coverage: 26, minDepth: 7 [pilon] Confirmed 591 of 711 bases (83.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4041_length_711_cov_16.140678:1-711 [pilon] Processing NODE_130_length_2815_cov_19.983667:1-2815 [pilon] NODE_5371_length_586_cov_20.886022:1-586 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 220, Coverage: 37, minDepth: 9 [pilon] Confirmed 435 of 586 bases (74.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5371_length_586_cov_20.886022:1-586 [pilon] Processing NODE_10101_length_321_cov_19.450000:1-321 [pilon] NODE_12547_length_243_cov_28.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12547_length_243_cov_28.360656:1-243 [pilon] Processing NODE_3669_length_759_cov_18.896552:1-759 [pilon] NODE_5237_length_597_cov_18.289916:1-597 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 191, Coverage: 20, minDepth: 5 [pilon] Confirmed 358 of 597 bases (59.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5237_length_597_cov_18.289916:1-597 [pilon] Processing NODE_11441_length_266_cov_10.282759:1-266 [pilon] NODE_3352_length_805_cov_15.994152:1-805 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 264, Coverage: 28, minDepth: 7 [pilon] Confirmed 621 of 805 bases (77.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3352_length_805_cov_15.994152:1-805 [pilon] Processing NODE_15034_length_243_cov_5.049180:1-243 [pilon] NODE_6457_length_507_cov_0.707254:1-507 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 215 of 507 bases (42.41%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6457_length_507_cov_0.707254:1-507 [pilon] Processing NODE_5308_length_592_cov_1.838641:1-592 [pilon] NODE_2418_length_987_cov_4.408776:1-987 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 100, Coverage: 13, minDepth: 5 [pilon] Confirmed 694 of 987 bases (70.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2418_length_987_cov_4.408776:1-987 [pilon] Processing NODE_8769_length_378_cov_31.568093:1-378 [pilon] NODE_11022_length_282_cov_27.291925:1-282 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 95, Coverage: 9, minDepth: 5 [pilon] Confirmed 190 of 282 bases (67.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11022_length_282_cov_27.291925:1-282 [pilon] Processing NODE_5775_length_557_cov_28.919725:1-557 [pilon] NODE_6769_length_485_cov_9.873626:1-485 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 82, Coverage: 12, minDepth: 5 [pilon] Confirmed 299 of 485 bases (61.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6769_length_485_cov_9.873626:1-485 [pilon] Processing NODE_13445_length_243_cov_18.877049:1-243 [pilon] NODE_6433_length_508_cov_1.196382:1-508 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 272 of 508 bases (53.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6433_length_508_cov_1.196382:1-508 [pilon] Processing NODE_8326_length_403_cov_13.117021:1-403 [pilon] NODE_12889_length_243_cov_24.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12889_length_243_cov_24.172131:1-243 [pilon] Processing NODE_8429_length_398_cov_20.750903:1-398 [pilon] NODE_10677_length_299_cov_12.713483:1-299 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 56, Coverage: 3, minDepth: 5 [pilon] Confirmed 71 of 299 bases (23.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10677_length_299_cov_12.713483:1-299 [pilon] Processing NODE_9822_length_333_cov_19.099057:1-333 [pilon] NODE_6738_length_487_cov_49.997268:1-487 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 395, Coverage: 75, minDepth: 19 [pilon] Confirmed 392 of 487 bases (80.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6738_length_487_cov_49.997268:1-487 [pilon] Processing NODE_3281_length_818_cov_4.219512:1-818 [pilon] NODE_942_length_1533_cov_45.223796:1-1533 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 1544, Coverage: 74, minDepth: 19 [pilon] Confirmed 1378 of 1533 bases (89.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_942_length_1533_cov_45.223796:1-1533 [pilon] Processing NODE_14861_length_243_cov_7.032787:1-243 [pilon] NODE_7360_length_450_cov_16.714286:1-450 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 118, Coverage: 21, minDepth: 5 [pilon] Confirmed 373 of 450 bases (82.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7360_length_450_cov_16.714286:1-450 [pilon] Processing NODE_14344_length_243_cov_11.508197:1-243 [pilon] NODE_11982_length_246_cov_26.472000:1-246 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 59, Coverage: 6, minDepth: 5 [pilon] Confirmed 171 of 246 bases (69.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11982_length_246_cov_26.472000:1-246 [pilon] Processing NODE_3174_length_836_cov_19.130070:1-836 [pilon] NODE_12927_length_243_cov_23.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12927_length_243_cov_23.721311:1-243 [pilon] Processing NODE_1575_length_1228_cov_23.735321:1-1228 [pilon] NODE_10144_length_320_cov_13.326633:1-320 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 71, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 320 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10144_length_320_cov_13.326633:1-320 [pilon] NODE_4909_length_625_cov_21.380952:1-625 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 250, Coverage: 31, minDepth: 8 [pilon] Confirmed 475 of 625 bases (76.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4909_length_625_cov_21.380952:1-625 [pilon] Processing NODE_1144_length_1422_cov_2.584166:1-1422 [pilon] NODE_11200_length_276_cov_12.845161:1-276 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 44, Coverage: 4, minDepth: 5 [pilon] Confirmed 122 of 276 bases (44.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11200_length_276_cov_12.845161:1-276 [pilon] Processing NODE_11923_length_249_cov_11.773438:1-249 [pilon] NODE_2807_length_908_cov_16.087675:1-908 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 366, Coverage: 38, minDepth: 10 [pilon] Confirmed 860 of 908 bases (94.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2807_length_908_cov_16.087675:1-908 [pilon] Processing NODE_5414_length_583_cov_2.861472:1-583 [pilon] NODE_2336_length_1003_cov_20.337868:1-1003 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 397, Coverage: 38, minDepth: 10 [pilon] Confirmed 587 of 1003 bases (58.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2336_length_1003_cov_20.337868:1-1003 [pilon] Processing NODE_2354_length_1000_cov_16.770193:1-1000 [pilon] NODE_14590_length_243_cov_9.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14590_length_243_cov_9.532787:1-243 [pilon] Processing NODE_1405_length_1296_cov_20.257021:1-1296 [pilon] NODE_4511_length_660_cov_46.578850:1-660 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 662, Coverage: 56, minDepth: 14 [pilon] Confirmed 469 of 660 bases (71.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4511_length_660_cov_46.578850:1-660 [pilon] Processing NODE_3137_length_844_cov_13.163209:1-844 [pilon] NODE_576_length_1830_cov_27.787595:1-1830 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 1112, Coverage: 73, minDepth: 18 [pilon] Confirmed 1604 of 1830 bases (87.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_576_length_1830_cov_27.787595:1-1830 [pilon] Processing NODE_1741_length_1163_cov_31.895393:1-1163 [pilon] NODE_9632_length_340_cov_16.552511:1-340 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 58, Coverage: 2, minDepth: 5 [pilon] Confirmed 100 of 340 bases (29.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9632_length_340_cov_16.552511:1-340 [pilon] Processing NODE_1542_length_1243_cov_22.268271:1-1243 [pilon] NODE_8429_length_398_cov_20.750903:1-398 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 143, Coverage: 4, minDepth: 5 [pilon] Confirmed 139 of 398 bases (34.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8429_length_398_cov_20.750903:1-398 [pilon] Processing NODE_11502_length_264_cov_6.181818:1-264 [pilon] NODE_1591_length_1221_cov_39.890000:1-1221 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 978, Coverage: 91, minDepth: 23 [pilon] Confirmed 1112 of 1221 bases (91.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1591_length_1221_cov_39.890000:1-1221 [pilon] Processing NODE_15124_length_207_cov_5.918605:1-207 [pilon] NODE_11441_length_266_cov_10.282759:1-266 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 266 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11441_length_266_cov_10.282759:1-266 [pilon] Processing NODE_2421_length_986_cov_13.639306:1-986 [pilon] NODE_10101_length_321_cov_19.450000:1-321 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 61, Coverage: 6, minDepth: 5 [pilon] Confirmed 158 of 321 bases (49.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10101_length_321_cov_19.450000:1-321 [pilon] Processing NODE_1430_length_1289_cov_1.046233:1-1289 [pilon] NODE_2934_length_885_cov_10.506545:1-885 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 203, Coverage: 20, minDepth: 5 [pilon] Confirmed 657 of 885 bases (74.24%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2934_length_885_cov_10.506545:1-885 [pilon] Processing NODE_14491_length_243_cov_10.336066:1-243 [pilon] NODE_130_length_2815_cov_19.983667:1-2815 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 1303, Coverage: 46, minDepth: 12 [pilon] Confirmed 2555 of 2815 bases (90.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_130_length_2815_cov_19.983667:1-2815 [pilon] Processing NODE_2075_length_1066_cov_1.808466:1-1066 [pilon] NODE_14861_length_243_cov_7.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14861_length_243_cov_7.032787:1-243 [pilon] Processing NODE_6845_length_481_cov_1.369444:1-481 [pilon] NODE_13445_length_243_cov_18.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13445_length_243_cov_18.877049:1-243 [pilon] Processing NODE_6856_length_480_cov_15.877437:1-480 [pilon] NODE_9822_length_333_cov_19.099057:1-333 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 87, Coverage: 2, minDepth: 5 [pilon] Confirmed 100 of 333 bases (30.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9822_length_333_cov_19.099057:1-333 [pilon] Processing NODE_6085_length_533_cov_9.196602:1-533 [pilon] NODE_8326_length_403_cov_13.117021:1-403 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 84, Coverage: 16, minDepth: 5 [pilon] Confirmed 314 of 403 bases (77.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8326_length_403_cov_13.117021:1-403 [pilon] Processing NODE_4090_length_706_cov_9.191453:1-706 [pilon] NODE_5308_length_592_cov_1.838641:1-592 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 319 of 592 bases (53.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5308_length_592_cov_1.838641:1-592 [pilon] NODE_15034_length_243_cov_5.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15034_length_243_cov_5.049180:1-243 [pilon] NODE_8769_length_378_cov_31.568093:1-378 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 187, Coverage: 8, minDepth: 5 [pilon] Confirmed 154 of 378 bases (40.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8769_length_378_cov_31.568093:1-378 [pilon] Processing NODE_12805_length_243_cov_25.000000:1-243 [pilon] Processing NODE_6495_length_504_cov_10.274151:1-504 [pilon] NODE_3281_length_818_cov_4.219512:1-818 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 73, Coverage: 10, minDepth: 5 [pilon] Confirmed 687 of 818 bases (83.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3281_length_818_cov_4.219512:1-818 [pilon] Processing NODE_7745_length_430_cov_1.313916:1-430 [pilon] NODE_11923_length_249_cov_11.773438:1-249 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 36, Coverage: 4, minDepth: 5 [pilon] Confirmed 111 of 249 bases (44.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11923_length_249_cov_11.773438:1-249 [pilon] Processing NODE_5596_length_571_cov_2.008889:1-571 [pilon] Processing NODE_4472_length_664_cov_4.907919:1-664 [pilon] NODE_3174_length_836_cov_19.130070:1-836 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 333, Coverage: 41, minDepth: 10 [pilon] Confirmed 671 of 836 bases (80.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_5775_length_557_cov_28.919725:1-557 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 281, Coverage: 47, minDepth: 12 [pilon] Confirmed 493 of 557 bases (88.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3174_length_836_cov_19.130070:1-836 [pilon] Finished processing NODE_5775_length_557_cov_28.919725:1-557 [pilon] Processing NODE_9730_length_336_cov_32.753488:1-336 [pilon] NODE_3669_length_759_cov_18.896552:1-759 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 282, Coverage: 34, minDepth: 9 [pilon] Confirmed 638 of 759 bases (84.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3669_length_759_cov_18.896552:1-759 [pilon] Processing NODE_8121_length_412_cov_1.876289:1-412 [pilon] Processing NODE_4804_length_634_cov_10.543860:1-634 [pilon] NODE_5414_length_583_cov_2.861472:1-583 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 29, Coverage: 6, minDepth: 5 [pilon] Confirmed 262 of 583 bases (44.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5414_length_583_cov_2.861472:1-583 [pilon] Processing NODE_8199_length_408_cov_22.905923:1-408 [pilon] NODE_1575_length_1228_cov_23.735321:1-1228 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 674, Coverage: 61, minDepth: 15 [pilon] Confirmed 846 of 1228 bases (68.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1575_length_1228_cov_23.735321:1-1228 [pilon] Processing NODE_9957_length_327_cov_22.669903:1-327 [pilon] NODE_14344_length_243_cov_11.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14344_length_243_cov_11.508197:1-243 [pilon] Processing NODE_9918_length_329_cov_18.831731:1-329 [pilon] NODE_1405_length_1296_cov_20.257021:1-1296 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 621, Coverage: 34, minDepth: 9 [pilon] Confirmed 1087 of 1296 bases (83.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1405_length_1296_cov_20.257021:1-1296 [pilon] Processing NODE_308_length_2230_cov_24.521574:1-2230 [pilon] NODE_3137_length_844_cov_13.163209:1-844 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 272, Coverage: 32, minDepth: 8 [pilon] Confirmed 664 of 844 bases (78.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3137_length_844_cov_13.163209:1-844 [pilon] Processing NODE_10247_length_315_cov_13.097938:1-315 [pilon] NODE_1144_length_1422_cov_2.584166:1-1422 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 96, Coverage: 9, minDepth: 5 [pilon] Confirmed 1014 of 1422 bases (71.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1144_length_1422_cov_2.584166:1-1422 [pilon] Processing NODE_4490_length_662_cov_53.112754:1-662 [pilon] NODE_2354_length_1000_cov_16.770193:1-1000 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 374, Coverage: 28, minDepth: 7 [pilon] Confirmed 868 of 1000 bases (86.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2354_length_1000_cov_16.770193:1-1000 [pilon] Processing NODE_7503_length_443_cov_2.947205:1-443 [pilon] NODE_1741_length_1163_cov_31.895393:1-1163 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 783, Coverage: 69, minDepth: 17 [pilon] Confirmed 1024 of 1163 bases (88.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1741_length_1163_cov_31.895393:1-1163 [pilon] NODE_11502_length_264_cov_6.181818:1-264 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11502_length_264_cov_6.181818:1-264 [pilon] Processing NODE_14901_length_243_cov_6.713115:1-243 [pilon] Processing NODE_8519_length_393_cov_13.147059:1-393 [pilon] NODE_8121_length_412_cov_1.876289:1-412 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 222 of 412 bases (53.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8121_length_412_cov_1.876289:1-412 [pilon] Processing NODE_13887_length_243_cov_15.008197:1-243 [pilon] NODE_15124_length_207_cov_5.918605:1-207 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 207 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15124_length_207_cov_5.918605:1-207 [pilon] Processing NODE_10508_length_304_cov_16.245902:1-304 [pilon] NODE_14491_length_243_cov_10.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14491_length_243_cov_10.336066:1-243 [pilon] Processing NODE_3898_length_728_cov_14.304778:1-728 [pilon] NODE_12805_length_243_cov_25.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12805_length_243_cov_25.000000:1-243 [pilon] Processing NODE_755_length_1664_cov_22.342191:1-1664 [pilon] NODE_4472_length_664_cov_4.907919:1-664 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 75, Coverage: 14, minDepth: 5 [pilon] Confirmed 545 of 664 bases (82.08%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4472_length_664_cov_4.907919:1-664 [pilon] Processing NODE_7624_length_436_cov_14.825397:1-436 [pilon] NODE_8199_length_408_cov_22.905923:1-408 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 149, Coverage: 13, minDepth: 5 [pilon] Confirmed 272 of 408 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8199_length_408_cov_22.905923:1-408 [pilon] Processing NODE_5810_length_554_cov_49.233256:1-554 [pilon] NODE_1430_length_1289_cov_1.046233:1-1289 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 46, Coverage: 5, minDepth: 5 [pilon] Confirmed 555 of 1289 bases (43.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1430_length_1289_cov_1.046233:1-1289 [pilon] Processing NODE_2978_length_878_cov_6.887715:1-878 [pilon] NODE_7745_length_430_cov_1.313916:1-430 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 117 of 430 bases (27.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7745_length_430_cov_1.313916:1-430 [pilon] Processing NODE_11956_length_247_cov_9.968254:1-247 [pilon] NODE_2421_length_986_cov_13.639306:1-986 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 283, Coverage: 37, minDepth: 9 [pilon] Confirmed 728 of 986 bases (73.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2421_length_986_cov_13.639306:1-986 [pilon] Processing NODE_10258_length_315_cov_9.731959:1-315 [pilon] NODE_1542_length_1243_cov_22.268271:1-1243 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 597, Coverage: 54, minDepth: 14 [pilon] Confirmed 1046 of 1243 bases (84.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1542_length_1243_cov_22.268271:1-1243 [pilon] Processing NODE_11974_length_246_cov_30.512000:1-246 [pilon] NODE_4090_length_706_cov_9.191453:1-706 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 155, Coverage: 17, minDepth: 5 [pilon] Confirmed 370 of 706 bases (52.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4090_length_706_cov_9.191453:1-706 [pilon] Processing NODE_14251_length_243_cov_12.254098:1-243 [pilon] NODE_6085_length_533_cov_9.196602:1-533 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 81, Coverage: 11, minDepth: 5 [pilon] Confirmed 365 of 533 bases (68.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6085_length_533_cov_9.196602:1-533 [pilon] Processing NODE_4805_length_634_cov_10.046784:1-634 [pilon] NODE_2075_length_1066_cov_1.808466:1-1066 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 46, Coverage: 5, minDepth: 5 [pilon] Confirmed 512 of 1066 bases (48.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2075_length_1066_cov_1.808466:1-1066 [pilon] Processing NODE_9816_length_333_cov_24.084906:1-333 [pilon] NODE_6495_length_504_cov_10.274151:1-504 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 89, Coverage: 9, minDepth: 5 [pilon] Confirmed 423 of 504 bases (83.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6495_length_504_cov_10.274151:1-504 [pilon] Processing NODE_9642_length_339_cov_34.192661:1-339 [pilon] NODE_6845_length_481_cov_1.369444:1-481 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 112 of 481 bases (23.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6845_length_481_cov_1.369444:1-481 [pilon] Processing NODE_11470_length_264_cov_20.692308:1-264 [pilon] NODE_9730_length_336_cov_32.753488:1-336 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 148, Coverage: 6, minDepth: 5 [pilon] Confirmed 150 of 336 bases (44.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9730_length_336_cov_32.753488:1-336 [pilon] Processing NODE_5648_length_567_cov_15.717489:1-567 [pilon] NODE_5596_length_571_cov_2.008889:1-571 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 310 of 571 bases (54.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5596_length_571_cov_2.008889:1-571 [pilon] Processing NODE_10014_length_324_cov_28.049261:1-324 [pilon] NODE_6856_length_480_cov_15.877437:1-480 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 168, Coverage: 16, minDepth: 5 [pilon] Confirmed 325 of 480 bases (67.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6856_length_480_cov_15.877437:1-480 [pilon] Processing NODE_2751_length_917_cov_33.216080:1-917 [pilon] NODE_9957_length_327_cov_22.669903:1-327 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 113, Coverage: 17, minDepth: 5 [pilon] Confirmed 299 of 327 bases (91.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9957_length_327_cov_22.669903:1-327 [pilon] Processing NODE_14164_length_243_cov_12.950820:1-243 [pilon] NODE_4804_length_634_cov_10.543860:1-634 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 154, Coverage: 11, minDepth: 5 [pilon] Confirmed 396 of 634 bases (62.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4804_length_634_cov_10.543860:1-634 [pilon] Processing NODE_1248_length_1367_cov_2.862761:1-1367 [pilon] NODE_14901_length_243_cov_6.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_11956_length_247_cov_9.968254:1-247 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 28, Coverage: 3, minDepth: 5 [pilon] Confirmed 49 of 247 bases (19.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14901_length_243_cov_6.713115:1-243 [pilon] Finished processing NODE_11956_length_247_cov_9.968254:1-247 [pilon] Processing NODE_4944_length_623_cov_0.950199:1-623 [pilon] Processing NODE_7762_length_429_cov_16.574675:1-429 [pilon] NODE_7503_length_443_cov_2.947205:1-443 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 28, Coverage: 5, minDepth: 5 [pilon] Confirmed 288 of 443 bases (65.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_9918_length_329_cov_18.831731:1-329 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 92, Coverage: 5, minDepth: 5 [pilon] Confirmed 166 of 329 bases (50.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9918_length_329_cov_18.831731:1-329 [pilon] Finished processing NODE_7503_length_443_cov_2.947205:1-443 [pilon] Processing NODE_5054_length_614_cov_26.574037:1-614 [pilon] Processing NODE_5068_length_613_cov_14.390244:1-613 [pilon] NODE_8519_length_393_cov_13.147059:1-393 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 74, Coverage: 11, minDepth: 5 [pilon] Confirmed 252 of 393 bases (64.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8519_length_393_cov_13.147059:1-393 [pilon] Processing NODE_10839_length_291_cov_10.588235:1-291 [pilon] NODE_10247_length_315_cov_13.097938:1-315 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 207 of 315 bases (65.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10247_length_315_cov_13.097938:1-315 [pilon] Processing NODE_8466_length_396_cov_10.036364:1-396 [pilon] NODE_5810_length_554_cov_49.233256:1-554 log: [pilon] frags shovill.bam: coverage 83 [pilon] Total Reads: 478, Coverage: 83, minDepth: 21 [pilon] Confirmed 452 of 554 bases (81.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5810_length_554_cov_49.233256:1-554 [pilon] Processing NODE_4828_length_632_cov_10.684932:1-632 [pilon] NODE_308_length_2230_cov_24.521574:1-2230 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 1246, Coverage: 66, minDepth: 17 [pilon] Confirmed 2061 of 2230 bases (92.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_308_length_2230_cov_24.521574:1-2230 [pilon] Processing NODE_14855_length_243_cov_7.122951:1-243 [pilon] NODE_4490_length_662_cov_53.112754:1-662 log: [pilon] frags shovill.bam: coverage 99 [pilon] Total Reads: 636, Coverage: 99, minDepth: 25 [pilon] Confirmed 576 of 662 bases (87.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4490_length_662_cov_53.112754:1-662 [pilon] Processing NODE_12369_length_243_cov_31.713115:1-243 [pilon] NODE_4805_length_634_cov_10.046784:1-634 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 123, Coverage: 15, minDepth: 5 [pilon] Confirmed 553 of 634 bases (87.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4805_length_634_cov_10.046784:1-634 [pilon] Processing NODE_1165_length_1411_cov_19.924806:1-1411 [pilon] NODE_11974_length_246_cov_30.512000:1-246 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 72, Coverage: 7, minDepth: 5 [pilon] Confirmed 222 of 246 bases (90.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11974_length_246_cov_30.512000:1-246 [pilon] Processing NODE_12464_length_243_cov_29.680328:1-243 [pilon] NODE_14251_length_243_cov_12.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14251_length_243_cov_12.254098:1-243 [pilon] Processing NODE_9385_length_351_cov_13.395652:1-351 [pilon] NODE_13887_length_243_cov_15.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13887_length_243_cov_15.008197:1-243 [pilon] Processing NODE_11587_length_261_cov_13.435714:1-261 [pilon] NODE_7624_length_436_cov_14.825397:1-436 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 114, Coverage: 13, minDepth: 5 [pilon] Confirmed 343 of 436 bases (78.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7624_length_436_cov_14.825397:1-436 [pilon] Processing NODE_5324_length_591_cov_1.340426:1-591 [pilon] NODE_2978_length_878_cov_6.887715:1-878 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 123, Coverage: 18, minDepth: 5 [pilon] Confirmed 616 of 878 bases (70.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2978_length_878_cov_6.887715:1-878 [pilon] Processing NODE_7376_length_450_cov_1.820669:1-450 [pilon] NODE_10258_length_315_cov_9.731959:1-315 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 43, Coverage: 2, minDepth: 5 [pilon] Confirmed 109 of 315 bases (34.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10258_length_315_cov_9.731959:1-315 [pilon] NODE_10508_length_304_cov_16.245902:1-304 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 58, Coverage: 7, minDepth: 5 [pilon] Confirmed 183 of 304 bases (60.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10508_length_304_cov_16.245902:1-304 [pilon] Processing NODE_15074_length_236_cov_13.939130:1-236 [pilon] Processing NODE_11523_length_263_cov_14.126761:1-263 [pilon] NODE_755_length_1664_cov_22.342191:1-1664 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 784, Coverage: 49, minDepth: 12 [pilon] Confirmed 1371 of 1664 bases (82.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_755_length_1664_cov_22.342191:1-1664 [pilon] Processing NODE_7468_length_444_cov_29.510836:1-444 [pilon] NODE_3898_length_728_cov_14.304778:1-728 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 199, Coverage: 25, minDepth: 6 [pilon] Confirmed 666 of 728 bases (91.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3898_length_728_cov_14.304778:1-728 [pilon] Processing NODE_5905_length_547_cov_31.410798:1-547 [pilon] NODE_9816_length_333_cov_24.084906:1-333 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 113, Coverage: 18, minDepth: 5 [pilon] Confirmed 261 of 333 bases (78.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9816_length_333_cov_24.084906:1-333 [pilon] Processing NODE_12639_length_243_cov_26.991803:1-243 [pilon] NODE_11470_length_264_cov_20.692308:1-264 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 62, Coverage: 4, minDepth: 5 [pilon] Confirmed 111 of 264 bases (42.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11470_length_264_cov_20.692308:1-264 [pilon] Processing NODE_9888_length_330_cov_22.698565:1-330 [pilon] NODE_1248_length_1367_cov_2.862761:1-1367 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 113, Coverage: 11, minDepth: 5 [pilon] Confirmed 1177 of 1367 bases (86.10%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1248_length_1367_cov_2.862761:1-1367 [pilon] Processing NODE_6539_length_501_cov_2.605263:1-501 [pilon] NODE_14164_length_243_cov_12.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14164_length_243_cov_12.950820:1-243 [pilon] Processing NODE_8459_length_396_cov_16.370909:1-396 [pilon] NODE_9642_length_339_cov_34.192661:1-339 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 174, Coverage: 5, minDepth: 5 [pilon] Confirmed 141 of 339 bases (41.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9642_length_339_cov_34.192661:1-339 [pilon] Processing NODE_5799_length_555_cov_16.426267:1-555 [pilon] NODE_5648_length_567_cov_15.717489:1-567 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 165, Coverage: 20, minDepth: 5 [pilon] Confirmed 392 of 567 bases (69.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5648_length_567_cov_15.717489:1-567 [pilon] Processing NODE_4180_length_696_cov_14.184348:1-696 [pilon] NODE_10014_length_324_cov_28.049261:1-324 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 141, Coverage: 12, minDepth: 5 [pilon] Confirmed 231 of 324 bases (71.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10014_length_324_cov_28.049261:1-324 [pilon] Processing NODE_10998_length_285_cov_6.292683:1-285 [pilon] NODE_2751_length_917_cov_33.216080:1-917 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 621, Coverage: 76, minDepth: 19 [pilon] Confirmed 760 of 917 bases (82.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2751_length_917_cov_33.216080:1-917 [pilon] Processing NODE_13579_length_243_cov_17.696721:1-243 [pilon] NODE_4828_length_632_cov_10.684932:1-632 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 134, Coverage: 15, minDepth: 5 [pilon] Confirmed 442 of 632 bases (69.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4828_length_632_cov_10.684932:1-632 [pilon] Processing NODE_12433_length_243_cov_30.270492:1-243 [pilon] NODE_5324_length_591_cov_1.340426:1-591 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 355 of 591 bases (60.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5324_length_591_cov_1.340426:1-591 [pilon] Processing NODE_6061_length_535_cov_0.589372:1-535 [pilon] NODE_5054_length_614_cov_26.574037:1-614 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 266, Coverage: 38, minDepth: 10 [pilon] Confirmed 452 of 614 bases (73.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5054_length_614_cov_26.574037:1-614 [pilon] Processing NODE_10425_length_307_cov_26.107527:1-307 [pilon] NODE_4944_length_623_cov_0.950199:1-623 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 136 of 623 bases (21.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4944_length_623_cov_0.950199:1-623 [pilon] Processing NODE_15064_length_238_cov_23.401709:1-238 [pilon] NODE_10839_length_291_cov_10.588235:1-291 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 44, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 291 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10839_length_291_cov_10.588235:1-291 [pilon] Processing NODE_2528_length_961_cov_42.258333:1-961 [pilon] NODE_8466_length_396_cov_10.036364:1-396 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 396 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8466_length_396_cov_10.036364:1-396 [pilon] Processing NODE_276_length_2289_cov_2.783210:1-2289 [pilon] NODE_7762_length_429_cov_16.574675:1-429 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 119, Coverage: 21, minDepth: 5 [pilon] Confirmed 351 of 429 bases (81.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7762_length_429_cov_16.574675:1-429 [pilon] Processing NODE_7683_length_433_cov_7.387821:1-433 [pilon] NODE_12369_length_243_cov_31.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12369_length_243_cov_31.713115:1-243 [pilon] Processing NODE_4633_length_649_cov_7.975379:1-649 [pilon] NODE_5068_length_613_cov_14.390244:1-613 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 161, Coverage: 34, minDepth: 9 [pilon] Confirmed 492 of 613 bases (80.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5068_length_613_cov_14.390244:1-613 [pilon] Processing NODE_11790_length_253_cov_16.234848:1-253 [pilon] NODE_14855_length_243_cov_7.122951:1-243 log: [pilon] NODE_6539_length_501_cov_2.605263:1-501 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 27, Coverage: 7, minDepth: 5 [pilon] Confirmed 307 of 501 bases (61.28%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6539_length_501_cov_2.605263:1-501 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_6084_length_533_cov_15.652913:1-533 [pilon] Finished processing NODE_14855_length_243_cov_7.122951:1-243 [pilon] Processing NODE_14203_length_243_cov_12.581967:1-243 [pilon] NODE_9385_length_351_cov_13.395652:1-351 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 79, Coverage: 9, minDepth: 5 [pilon] Confirmed 242 of 351 bases (68.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9385_length_351_cov_13.395652:1-351 [pilon] Processing NODE_13042_length_243_cov_22.516393:1-243 [pilon] NODE_11587_length_261_cov_13.435714:1-261 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 37, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11587_length_261_cov_13.435714:1-261 [pilon] Processing NODE_7234_length_458_cov_23.925816:1-458 [pilon] NODE_12464_length_243_cov_29.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12464_length_243_cov_29.680328:1-243 [pilon] Processing NODE_6070_length_534_cov_16.278450:1-534 [pilon] NODE_11523_length_263_cov_14.126761:1-263 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 40, Coverage: 2, minDepth: 5 [pilon] Confirmed 34 of 263 bases (12.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11523_length_263_cov_14.126761:1-263 [pilon] Processing NODE_14687_length_243_cov_8.688525:1-243 [pilon] NODE_7376_length_450_cov_1.820669:1-450 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 261 of 450 bases (58.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7376_length_450_cov_1.820669:1-450 [pilon] NODE_7468_length_444_cov_29.510836:1-444 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 212, Coverage: 36, minDepth: 9 [pilon] Confirmed 399 of 444 bases (89.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_1770_length_1155_cov_33.293037:1-1155 [pilon] Finished processing NODE_7468_length_444_cov_29.510836:1-444 [pilon] Processing NODE_15213_length_153_cov_1.218750:1-153 [pilon] NODE_12639_length_243_cov_26.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12639_length_243_cov_26.991803:1-243 [pilon] Processing NODE_15256_length_125_cov_19.500000:1-125 [pilon] NODE_15074_length_236_cov_13.939130:1-236 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 38, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 236 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15074_length_236_cov_13.939130:1-236 [pilon] Processing NODE_10546_length_303_cov_15.554945:1-303 [pilon] NODE_9888_length_330_cov_22.698565:1-330 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 117, Coverage: 10, minDepth: 5 [pilon] Confirmed 222 of 330 bases (67.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9888_length_330_cov_22.698565:1-330 [pilon] Processing NODE_12474_length_243_cov_29.549180:1-243 [pilon] NODE_5905_length_547_cov_31.410798:1-547 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 301, Coverage: 48, minDepth: 12 [pilon] Confirmed 392 of 547 bases (71.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5905_length_547_cov_31.410798:1-547 [pilon] Processing NODE_6456_length_507_cov_0.844560:1-507 [pilon] NODE_1165_length_1411_cov_19.924806:1-1411 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 631, Coverage: 40, minDepth: 10 [pilon] Confirmed 1123 of 1411 bases (79.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1165_length_1411_cov_19.924806:1-1411 [pilon] Processing NODE_8021_length_417_cov_22.506757:1-417 [pilon] NODE_10998_length_285_cov_6.292683:1-285 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10998_length_285_cov_6.292683:1-285 [pilon] Processing NODE_12658_length_243_cov_26.745902:1-243 [pilon] NODE_8459_length_396_cov_16.370909:1-396 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 97, Coverage: 11, minDepth: 5 [pilon] Confirmed 243 of 396 bases (61.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8459_length_396_cov_16.370909:1-396 [pilon] Processing NODE_6667_length_492_cov_26.433962:1-492 [pilon] NODE_12433_length_243_cov_30.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 86, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12433_length_243_cov_30.270492:1-243 [pilon] Processing NODE_3485_length_787_cov_17.555556:1-787 [pilon] NODE_5799_length_555_cov_16.426267:1-555 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 177, Coverage: 28, minDepth: 7 [pilon] Confirmed 426 of 555 bases (76.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5799_length_555_cov_16.426267:1-555 [pilon] Processing NODE_12734_length_243_cov_25.795082:1-243 [pilon] NODE_13579_length_243_cov_17.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13579_length_243_cov_17.696721:1-243 [pilon] Processing NODE_12129_length_243_cov_41.983607:1-243 [pilon] NODE_6084_length_533_cov_15.652913:1-533 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 159, Coverage: 18, minDepth: 5 [pilon] Confirmed 341 of 533 bases (63.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6084_length_533_cov_15.652913:1-533 [pilon] Processing NODE_2658_length_936_cov_11.461350:1-936 [pilon] NODE_4180_length_696_cov_14.184348:1-696 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 173, Coverage: 14, minDepth: 5 [pilon] Confirmed 454 of 696 bases (65.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4180_length_696_cov_14.184348:1-696 [pilon] Processing NODE_14535_length_243_cov_10.008197:1-243 [pilon] NODE_6061_length_535_cov_0.589372:1-535 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 535 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6061_length_535_cov_0.589372:1-535 [pilon] Processing NODE_79_length_3177_cov_2.158704:1-3177 [pilon] NODE_10425_length_307_cov_26.107527:1-307 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 106, Coverage: 5, minDepth: 5 [pilon] Confirmed 146 of 307 bases (47.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10425_length_307_cov_26.107527:1-307 [pilon] Processing NODE_3973_length_717_cov_37.115772:1-717 [pilon] NODE_12474_length_243_cov_29.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12474_length_243_cov_29.549180:1-243 [pilon] Processing NODE_4055_length_710_cov_15.694397:1-710 [pilon] NODE_13042_length_243_cov_22.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13042_length_243_cov_22.516393:1-243 [pilon] Processing NODE_10263_length_315_cov_8.891753:1-315 [pilon] NODE_11790_length_253_cov_16.234848:1-253 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 45, Coverage: 3, minDepth: 5 [pilon] Confirmed 58 of 253 bases (22.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11790_length_253_cov_16.234848:1-253 [pilon] Processing NODE_4064_length_709_cov_2.659864:1-709 [pilon] NODE_15064_length_238_cov_23.401709:1-238 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 57, Coverage: 3, minDepth: 5 [pilon] Confirmed 37 of 238 bases (15.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15064_length_238_cov_23.401709:1-238 [pilon] Processing NODE_3679_length_758_cov_1.762951:1-758 [pilon] NODE_14203_length_243_cov_12.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14203_length_243_cov_12.581967:1-243 [pilon] Processing NODE_5344_length_589_cov_8.547009:1-589 [pilon] NODE_7683_length_433_cov_7.387821:1-433 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 57, Coverage: 9, minDepth: 5 [pilon] Confirmed 260 of 433 bases (60.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7683_length_433_cov_7.387821:1-433 [pilon] Processing NODE_4626_length_650_cov_3.026465:1-650 [pilon] NODE_4633_length_649_cov_7.975379:1-649 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 91, Coverage: 18, minDepth: 5 [pilon] Confirmed 603 of 649 bases (92.91%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4633_length_649_cov_7.975379:1-649 [pilon] Processing NODE_9116_length_360_cov_29.711297:1-360 [pilon] NODE_10546_length_303_cov_15.554945:1-303 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 56, Coverage: 6, minDepth: 5 [pilon] Confirmed 206 of 303 bases (67.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10546_length_303_cov_15.554945:1-303 [pilon] Processing NODE_13409_length_243_cov_19.188525:1-243 [pilon] NODE_6070_length_534_cov_16.278450:1-534 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 151, Coverage: 10, minDepth: 5 [pilon] Confirmed 341 of 534 bases (63.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6070_length_534_cov_16.278450:1-534 [pilon] Processing NODE_1632_length_1205_cov_14.326568:1-1205 [pilon] NODE_7234_length_458_cov_23.925816:1-458 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 182, Coverage: 17, minDepth: 5 [pilon] Confirmed 269 of 458 bases (58.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7234_length_458_cov_23.925816:1-458 [pilon] Processing NODE_13133_length_243_cov_21.655738:1-243 [pilon] NODE_15256_length_125_cov_19.500000:1-125 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 125 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15256_length_125_cov_19.500000:1-125 [pilon] Processing NODE_9357_length_351_cov_29.900000:1-351 [pilon] NODE_276_length_2289_cov_2.783210:1-2289 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 167, Coverage: 9, minDepth: 5 [pilon] Confirmed 1610 of 2289 bases (70.34%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_276_length_2289_cov_2.783210:1-2289 [pilon] Processing NODE_8898_length_372_cov_15.820717:1-372 [pilon] NODE_2528_length_961_cov_42.258333:1-961 log: [pilon] frags shovill.bam: coverage 100 [pilon] Total Reads: 811, Coverage: 100, minDepth: 25 [pilon] Confirmed 855 of 961 bases (88.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2528_length_961_cov_42.258333:1-961 [pilon] Processing NODE_9405_length_350_cov_17.262009:1-350 [pilon] NODE_15213_length_153_cov_1.218750:1-153 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 153 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15213_length_153_cov_1.218750:1-153 [pilon] Processing NODE_5908_length_547_cov_12.384977:1-547 [pilon] NODE_14687_length_243_cov_8.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14687_length_243_cov_8.688525:1-243 [pilon] Processing NODE_3293_length_816_cov_9.640288:1-816 [pilon] NODE_1770_length_1155_cov_33.293037:1-1155 log: [pilon] frags shovill.bam: coverage 87 [pilon] Total Reads: 802, Coverage: 87, minDepth: 22 [pilon] Confirmed 790 of 1155 bases (68.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1770_length_1155_cov_33.293037:1-1155 [pilon] Processing NODE_9501_length_345_cov_29.348214:1-345 [pilon] NODE_6456_length_507_cov_0.844560:1-507 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 107 of 507 bases (21.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6456_length_507_cov_0.844560:1-507 [pilon] Processing NODE_5637_length_568_cov_2.078300:1-568 [pilon] NODE_12734_length_243_cov_25.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12734_length_243_cov_25.795082:1-243 [pilon] Processing NODE_6602_length_497_cov_19.172872:1-497 [pilon] NODE_3485_length_787_cov_17.555556:1-787 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 304, Coverage: 24, minDepth: 6 [pilon] Confirmed 661 of 787 bases (83.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3485_length_787_cov_17.555556:1-787 [pilon] Processing NODE_12182_length_243_cov_37.459016:1-243 [pilon] NODE_2658_length_936_cov_11.461350:1-936 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 226, Coverage: 19, minDepth: 5 [pilon] Confirmed 520 of 936 bases (55.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2658_length_936_cov_11.461350:1-936 [pilon] Processing NODE_12428_length_243_cov_30.368852:1-243 [pilon] NODE_12658_length_243_cov_26.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12658_length_243_cov_26.745902:1-243 [pilon] Processing NODE_13422_length_243_cov_19.090164:1-243 [pilon] NODE_8021_length_417_cov_22.506757:1-417 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 140, Coverage: 14, minDepth: 5 [pilon] Confirmed 331 of 417 bases (79.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8021_length_417_cov_22.506757:1-417 [pilon] Processing NODE_5411_length_583_cov_12.783550:1-583 [pilon] NODE_12129_length_243_cov_41.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 102, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12129_length_243_cov_41.983607:1-243 [pilon] Processing NODE_2007_length_1085_cov_21.813278:1-1085 [pilon] NODE_14535_length_243_cov_10.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14535_length_243_cov_10.008197:1-243 [pilon] Processing NODE_11004_length_284_cov_24.607362:1-284 [pilon] NODE_6667_length_492_cov_26.433962:1-492 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 216, Coverage: 38, minDepth: 10 [pilon] Confirmed 442 of 492 bases (89.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6667_length_492_cov_26.433962:1-492 [pilon] Processing NODE_9915_length_329_cov_21.841346:1-329 [pilon] NODE_79_length_3177_cov_2.158704:1-3177 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 186, Coverage: 8, minDepth: 5 [pilon] Confirmed 2083 of 3177 bases (65.56%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_79_length_3177_cov_2.158704:1-3177 [pilon] Processing NODE_1794_length_1148_cov_3.334956:1-1148 [pilon] NODE_3973_length_717_cov_37.115772:1-717 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 526, Coverage: 61, minDepth: 15 [pilon] Confirmed 543 of 717 bases (75.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3973_length_717_cov_37.115772:1-717 [pilon] Processing NODE_7653_length_435_cov_13.283439:1-435 [pilon] NODE_8898_length_372_cov_15.820717:1-372 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 98, Coverage: 12, minDepth: 5 [pilon] Confirmed 299 of 372 bases (80.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8898_length_372_cov_15.820717:1-372 [pilon] Processing NODE_12195_length_243_cov_36.983607:1-243 [pilon] NODE_3293_length_816_cov_9.640288:1-816 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 139, Coverage: 18, minDepth: 5 [pilon] Confirmed 762 of 816 bases (93.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3293_length_816_cov_9.640288:1-816 [pilon] Processing NODE_13656_length_243_cov_16.926230:1-243 [pilon] NODE_1632_length_1205_cov_14.326568:1-1205 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 385, Coverage: 33, minDepth: 8 [pilon] Confirmed 977 of 1205 bases (81.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1632_length_1205_cov_14.326568:1-1205 [pilon] Processing NODE_8216_length_408_cov_0.979094:1-408 [pilon] NODE_5908_length_547_cov_12.384977:1-547 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 102, Coverage: 9, minDepth: 5 [pilon] Confirmed 329 of 547 bases (60.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5908_length_547_cov_12.384977:1-547 [pilon] Processing NODE_2655_length_936_cov_22.000000:1-936 [pilon] NODE_4055_length_710_cov_15.694397:1-710 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 225, Coverage: 21, minDepth: 5 [pilon] Confirmed 468 of 710 bases (65.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4055_length_710_cov_15.694397:1-710 [pilon] Processing NODE_4053_length_710_cov_18.818336:1-710 [pilon] NODE_9405_length_350_cov_17.262009:1-350 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 87, Coverage: 10, minDepth: 5 [pilon] Confirmed 201 of 350 bases (57.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9405_length_350_cov_17.262009:1-350 [pilon] Processing NODE_6436_length_507_cov_30.269430:1-507 [pilon] NODE_9116_length_360_cov_29.711297:1-360 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 153, Coverage: 37, minDepth: 9 [pilon] Confirmed 296 of 360 bases (82.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9116_length_360_cov_29.711297:1-360 [pilon] Processing NODE_14321_length_243_cov_11.688525:1-243 [pilon] NODE_10263_length_315_cov_8.891753:1-315 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10263_length_315_cov_8.891753:1-315 [pilon] Processing NODE_5429_length_582_cov_15.832972:1-582 [pilon] NODE_13409_length_243_cov_19.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13409_length_243_cov_19.188525:1-243 [pilon] Processing NODE_5105_length_610_cov_2.922290:1-610 [pilon] NODE_3679_length_758_cov_1.762951:1-758 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 35, Coverage: 6, minDepth: 5 [pilon] Confirmed 360 of 758 bases (47.49%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3679_length_758_cov_1.762951:1-758 [pilon] Processing NODE_339_length_2138_cov_4.883490:1-2138 [pilon] NODE_5344_length_589_cov_8.547009:1-589 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 97, Coverage: 11, minDepth: 5 [pilon] Confirmed 446 of 589 bases (75.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5344_length_589_cov_8.547009:1-589 [pilon] Processing NODE_12438_length_243_cov_30.204918:1-243 [pilon] NODE_13133_length_243_cov_21.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13133_length_243_cov_21.655738:1-243 [pilon] Processing NODE_6603_length_497_cov_14.582447:1-497 [pilon] NODE_4064_length_709_cov_2.659864:1-709 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 43, Coverage: 8, minDepth: 5 [pilon] Confirmed 441 of 709 bases (62.20%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4064_length_709_cov_2.659864:1-709 [pilon] Processing NODE_13895_length_243_cov_14.950820:1-243 [pilon] NODE_9357_length_351_cov_29.900000:1-351 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 152, Coverage: 4, minDepth: 5 [pilon] Confirmed 136 of 351 bases (38.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9357_length_351_cov_29.900000:1-351 [pilon] Processing NODE_7446_length_446_cov_15.990769:1-446 [pilon] NODE_4626_length_650_cov_3.026465:1-650 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 52, Coverage: 8, minDepth: 5 [pilon] Confirmed 423 of 650 bases (65.08%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4626_length_650_cov_3.026465:1-650 [pilon] Processing NODE_8556_length_390_cov_23.327138:1-390 [pilon] NODE_9501_length_345_cov_29.348214:1-345 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 154, Coverage: 14, minDepth: 5 [pilon] Confirmed 249 of 345 bases (72.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9501_length_345_cov_29.348214:1-345 [pilon] Processing NODE_6252_length_521_cov_1.490000:1-521 [pilon] NODE_5637_length_568_cov_2.078300:1-568 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 272 of 568 bases (47.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5637_length_568_cov_2.078300:1-568 [pilon] Processing NODE_6674_length_492_cov_17.444744:1-492 [pilon] NODE_6602_length_497_cov_19.172872:1-497 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 170, Coverage: 34, minDepth: 9 [pilon] Confirmed 428 of 497 bases (86.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6602_length_497_cov_19.172872:1-497 [pilon] Processing NODE_2458_length_976_cov_2.989474:1-976 [pilon] NODE_12428_length_243_cov_30.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12428_length_243_cov_30.368852:1-243 [pilon] Processing NODE_5142_length_606_cov_27.364948:1-606 [pilon] NODE_5411_length_583_cov_12.783550:1-583 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 143, Coverage: 12, minDepth: 5 [pilon] Confirmed 325 of 583 bases (55.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5411_length_583_cov_12.783550:1-583 [pilon] Processing NODE_7120_length_465_cov_0.752907:1-465 [pilon] NODE_13422_length_243_cov_19.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13422_length_243_cov_19.090164:1-243 [pilon] Processing NODE_91_length_3086_cov_23.203710:1-3086 [pilon] NODE_12182_length_243_cov_37.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 100, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12182_length_243_cov_37.459016:1-243 [pilon] Processing NODE_523_length_1894_cov_24.354766:1-1894 [pilon] NODE_8216_length_408_cov_0.979094:1-408 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 408 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8216_length_408_cov_0.979094:1-408 [pilon] Processing NODE_5709_length_563_cov_1.796380:1-563 [pilon] NODE_12195_length_243_cov_36.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12195_length_243_cov_36.983607:1-243 [pilon] Processing NODE_8138_length_411_cov_21.944828:1-411 [pilon] NODE_2655_length_936_cov_22.000000:1-936 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 466, Coverage: 32, minDepth: 8 [pilon] Confirmed 777 of 936 bases (83.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2655_length_936_cov_22.000000:1-936 [pilon] Processing NODE_14517_length_243_cov_10.172131:1-243 [pilon] NODE_2007_length_1085_cov_21.813278:1-1085 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 477, Coverage: 42, minDepth: 11 [pilon] Confirmed 1009 of 1085 bases (93.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2007_length_1085_cov_21.813278:1-1085 [pilon] Processing NODE_203_length_2492_cov_2.502320:1-2492 [pilon] NODE_9915_length_329_cov_21.841346:1-329 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 97, Coverage: 9, minDepth: 5 [pilon] Confirmed 245 of 329 bases (74.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9915_length_329_cov_21.841346:1-329 [pilon] Processing NODE_8146_length_411_cov_13.782759:1-411 [pilon] NODE_11004_length_284_cov_24.607362:1-284 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 88, Coverage: 6, minDepth: 5 [pilon] Confirmed 161 of 284 bases (56.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11004_length_284_cov_24.607362:1-284 [pilon] Processing NODE_12473_length_243_cov_29.573770:1-243 [pilon] NODE_1794_length_1148_cov_3.334956:1-1148 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 92, Coverage: 10, minDepth: 5 [pilon] Confirmed 845 of 1148 bases (73.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1794_length_1148_cov_3.334956:1-1148 [pilon] Processing NODE_4158_length_698_cov_0.755633:1-698 [pilon] NODE_6436_length_507_cov_30.269430:1-507 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 272, Coverage: 33, minDepth: 8 [pilon] Confirmed 430 of 507 bases (84.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6436_length_507_cov_30.269430:1-507 [pilon] Processing NODE_12590_length_243_cov_27.663934:1-243 [pilon] NODE_7653_length_435_cov_13.283439:1-435 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 99, Coverage: 19, minDepth: 5 [pilon] Confirmed 333 of 435 bases (76.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7653_length_435_cov_13.283439:1-435 [pilon] Processing NODE_6986_length_472_cov_27.051282:1-472 [pilon] NODE_13656_length_243_cov_16.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13656_length_243_cov_16.926230:1-243 [pilon] Processing NODE_12173_length_243_cov_37.909836:1-243 [pilon] NODE_5142_length_606_cov_27.364948:1-606 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 285, Coverage: 28, minDepth: 7 [pilon] Confirmed 449 of 606 bases (74.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5142_length_606_cov_27.364948:1-606 [pilon] Processing NODE_9616_length_341_cov_38.922727:1-341 [pilon] NODE_8556_length_390_cov_23.327138:1-390 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 150, Coverage: 16, minDepth: 5 [pilon] Confirmed 255 of 390 bases (65.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8556_length_390_cov_23.327138:1-390 [pilon] Processing NODE_12219_length_243_cov_35.860656:1-243 [pilon] NODE_4053_length_710_cov_18.818336:1-710 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 241, Coverage: 29, minDepth: 7 [pilon] Confirmed 550 of 710 bases (77.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4053_length_710_cov_18.818336:1-710 [pilon] Processing NODE_13074_length_243_cov_22.196721:1-243 [pilon] NODE_14321_length_243_cov_11.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14321_length_243_cov_11.688525:1-243 [pilon] Processing NODE_1792_length_1149_cov_52.300584:1-1149 [pilon] NODE_13895_length_243_cov_14.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13895_length_243_cov_14.950820:1-243 [pilon] Processing NODE_13742_length_243_cov_16.106557:1-243 [pilon] NODE_5105_length_610_cov_2.922290:1-610 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 43, Coverage: 4, minDepth: 5 [pilon] Confirmed 212 of 610 bases (34.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5105_length_610_cov_2.922290:1-610 [pilon] Processing NODE_8498_length_394_cov_13.318681:1-394 [pilon] NODE_7446_length_446_cov_15.990769:1-446 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 114, Coverage: 13, minDepth: 5 [pilon] Confirmed 323 of 446 bases (72.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7446_length_446_cov_15.990769:1-446 [pilon] Processing NODE_11627_length_258_cov_24.452555:1-258 [pilon] NODE_6603_length_497_cov_14.582447:1-497 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 149, Coverage: 18, minDepth: 5 [pilon] Confirmed 345 of 497 bases (69.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6603_length_497_cov_14.582447:1-497 [pilon] Processing NODE_2279_length_1015_cov_21.014541:1-1015 [pilon] NODE_5429_length_582_cov_15.832972:1-582 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 174, Coverage: 30, minDepth: 8 [pilon] Confirmed 460 of 582 bases (79.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5429_length_582_cov_15.832972:1-582 [pilon] Processing NODE_10424_length_307_cov_27.752688:1-307 [pilon] NODE_12438_length_243_cov_30.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12438_length_243_cov_30.204918:1-243 [pilon] Processing NODE_2499_length_968_cov_6.598583:1-968 [pilon] NODE_6252_length_521_cov_1.490000:1-521 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 263 of 521 bases (50.48%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6252_length_521_cov_1.490000:1-521 [pilon] Processing NODE_5882_length_549_cov_15.471963:1-549 [pilon] NODE_2458_length_976_cov_2.989474:1-976 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 68, Coverage: 9, minDepth: 5 [pilon] Confirmed 835 of 976 bases (85.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2458_length_976_cov_2.989474:1-976 [pilon] Processing NODE_6213_length_523_cov_22.390547:1-523 [pilon] NODE_339_length_2138_cov_4.883490:1-2138 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 247, Coverage: 14, minDepth: 5 [pilon] Confirmed 1522 of 2138 bases (71.19%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_339_length_2138_cov_4.883490:1-2138 [pilon] Processing NODE_7816_length_426_cov_23.563934:1-426 [pilon] NODE_6674_length_492_cov_17.444744:1-492 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 145, Coverage: 18, minDepth: 5 [pilon] Confirmed 403 of 492 bases (81.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6674_length_492_cov_17.444744:1-492 [pilon] Processing NODE_1182_length_1406_cov_27.087938:1-1406 [pilon] NODE_5709_length_563_cov_1.796380:1-563 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 308 of 563 bases (54.71%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5709_length_563_cov_1.796380:1-563 [pilon] Processing NODE_14797_length_243_cov_7.721311:1-243 [pilon] NODE_7120_length_465_cov_0.752907:1-465 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 465 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7120_length_465_cov_0.752907:1-465 [pilon] Processing NODE_5927_length_546_cov_2.200000:1-546 [pilon] NODE_14517_length_243_cov_10.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14517_length_243_cov_10.172131:1-243 [pilon] Processing NODE_4388_length_672_cov_23.460980:1-672 [pilon] NODE_8146_length_411_cov_13.782759:1-411 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 82, Coverage: 15, minDepth: 5 [pilon] Confirmed 270 of 411 bases (65.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8146_length_411_cov_13.782759:1-411 [pilon] Processing NODE_12709_length_243_cov_26.106557:1-243 [pilon] NODE_8138_length_411_cov_21.944828:1-411 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 133, Coverage: 27, minDepth: 7 [pilon] Confirmed 341 of 411 bases (82.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8138_length_411_cov_21.944828:1-411 [pilon] Processing NODE_1282_length_1348_cov_3.494703:1-1348 [pilon] NODE_523_length_1894_cov_24.354766:1-1894 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 984, Coverage: 55, minDepth: 14 [pilon] Confirmed 1728 of 1894 bases (91.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_523_length_1894_cov_24.354766:1-1894 [pilon] Processing NODE_12260_length_243_cov_34.295082:1-243 [pilon] NODE_91_length_3086_cov_23.203710:1-3086 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1547, Coverage: 54, minDepth: 14 [pilon] Confirmed 2442 of 3086 bases (79.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_91_length_3086_cov_23.203710:1-3086 [pilon] Processing NODE_7924_length_422_cov_0.840532:1-422 [pilon] NODE_12590_length_243_cov_27.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12590_length_243_cov_27.663934:1-243 [pilon] Processing NODE_9043_length_364_cov_15.300412:1-364 [pilon] NODE_4158_length_698_cov_0.755633:1-698 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 162 of 698 bases (23.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4158_length_698_cov_0.755633:1-698 [pilon] Processing NODE_5595_length_571_cov_2.060000:1-571 [pilon] NODE_203_length_2492_cov_2.502320:1-2492 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 176, Coverage: 9, minDepth: 5 [pilon] Confirmed 1888 of 2492 bases (75.76%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_203_length_2492_cov_2.502320:1-2492 [pilon] Processing NODE_4270_length_685_cov_1.599291:1-685 [pilon] NODE_12473_length_243_cov_29.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12473_length_243_cov_29.573770:1-243 [pilon] Processing NODE_13022_length_243_cov_22.704918:1-243 [pilon] NODE_12219_length_243_cov_35.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 94, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12219_length_243_cov_35.860656:1-243 [pilon] Processing NODE_773_length_1642_cov_2.592373:1-1642 [pilon] NODE_9616_length_341_cov_38.922727:1-341 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 199, Coverage: 34, minDepth: 9 [pilon] Confirmed 303 of 341 bases (88.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9616_length_341_cov_38.922727:1-341 [pilon] Processing NODE_6506_length_503_cov_25.366492:1-503 [pilon] NODE_6986_length_472_cov_27.051282:1-472 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 177, Coverage: 28, minDepth: 7 [pilon] Confirmed 372 of 472 bases (78.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6986_length_472_cov_27.051282:1-472 [pilon] Processing NODE_3199_length_833_cov_1.188202:1-833 [pilon] NODE_12173_length_243_cov_37.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 89, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12173_length_243_cov_37.909836:1-243 [pilon] Processing NODE_3457_length_791_cov_3.044776:1-791 [pilon] NODE_14797_length_243_cov_7.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14797_length_243_cov_7.721311:1-243 [pilon] Processing NODE_6167_length_527_cov_15.879310:1-527 [pilon] NODE_13074_length_243_cov_22.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13074_length_243_cov_22.196721:1-243 [pilon] Processing NODE_669_length_1729_cov_20.634328:1-1729 [pilon] NODE_13742_length_243_cov_16.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13742_length_243_cov_16.106557:1-243 [pilon] Processing NODE_11125_length_279_cov_10.613924:1-279 [pilon] NODE_4388_length_672_cov_23.460980:1-672 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 314, Coverage: 28, minDepth: 7 [pilon] Confirmed 531 of 672 bases (79.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4388_length_672_cov_23.460980:1-672 [pilon] Processing NODE_2522_length_963_cov_0.944181:1-963 [pilon] NODE_11627_length_258_cov_24.452555:1-258 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 83, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 258 bases (57.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11627_length_258_cov_24.452555:1-258 [pilon] Processing NODE_3783_length_743_cov_3.300643:1-743 [pilon] NODE_2279_length_1015_cov_21.014541:1-1015 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 492, Coverage: 54, minDepth: 14 [pilon] Confirmed 928 of 1015 bases (91.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2279_length_1015_cov_21.014541:1-1015 [pilon] Processing NODE_1491_length_1265_cov_10.116259:1-1265 [pilon] NODE_10424_length_307_cov_27.752688:1-307 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 105, Coverage: 6, minDepth: 5 [pilon] Confirmed 169 of 307 bases (55.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10424_length_307_cov_27.752688:1-307 [pilon] Processing NODE_141_length_2777_cov_19.844503:1-2777 [pilon] NODE_8498_length_394_cov_13.318681:1-394 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 88, Coverage: 22, minDepth: 6 [pilon] Confirmed 359 of 394 bases (91.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8498_length_394_cov_13.318681:1-394 [pilon] Processing NODE_8887_length_372_cov_26.984064:1-372 [pilon] NODE_5882_length_549_cov_15.471963:1-549 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 124, Coverage: 22, minDepth: 6 [pilon] Confirmed 380 of 549 bases (69.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5882_length_549_cov_15.471963:1-549 [pilon] Processing NODE_2877_length_898_cov_10.508366:1-898 [pilon] NODE_12709_length_243_cov_26.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12709_length_243_cov_26.106557:1-243 [pilon] NODE_7816_length_426_cov_23.563934:1-426 log: [pilon] Processing NODE_13103_length_243_cov_21.918033:1-243 [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 175, Coverage: 13, minDepth: 5 [pilon] Confirmed 285 of 426 bases (66.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7816_length_426_cov_23.563934:1-426 [pilon] NODE_6213_length_523_cov_22.390547:1-523 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 212, Coverage: 30, minDepth: 8 [pilon] Confirmed 426 of 523 bases (81.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_841_length_1603_cov_32.439271:1-1603 [pilon] Finished processing NODE_6213_length_523_cov_22.390547:1-523 [pilon] Processing NODE_11435_length_266_cov_15.765517:1-266 [pilon] NODE_1792_length_1149_cov_52.300584:1-1149 log: [pilon] frags shovill.bam: coverage 127 [pilon] Total Reads: 1302, Coverage: 127, minDepth: 32 [pilon] Confirmed 1013 of 1149 bases (88.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1792_length_1149_cov_52.300584:1-1149 [pilon] Processing NODE_12450_length_243_cov_29.901639:1-243 [pilon] NODE_5927_length_546_cov_2.200000:1-546 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 297 of 546 bases (54.40%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5927_length_546_cov_2.200000:1-546 [pilon] Processing NODE_2796_length_909_cov_31.510152:1-909 [pilon] NODE_2499_length_968_cov_6.598583:1-968 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 139, Coverage: 12, minDepth: 5 [pilon] Confirmed 629 of 968 bases (64.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2499_length_968_cov_6.598583:1-968 [pilon] Processing NODE_12125_length_243_cov_42.672131:1-243 [pilon] NODE_1182_length_1406_cov_27.087938:1-1406 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 821, Coverage: 53, minDepth: 13 [pilon] Confirmed 1313 of 1406 bases (93.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1182_length_1406_cov_27.087938:1-1406 [pilon] Processing NODE_9239_length_356_cov_37.927660:1-356 [pilon] NODE_773_length_1642_cov_2.592373:1-1642 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 115, Coverage: 9, minDepth: 5 [pilon] Confirmed 1290 of 1642 bases (78.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_773_length_1642_cov_2.592373:1-1642 [pilon] Processing NODE_10475_length_306_cov_9.189189:1-306 [pilon] NODE_6506_length_503_cov_25.366492:1-503 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 209, Coverage: 23, minDepth: 6 [pilon] Confirmed 270 of 503 bases (53.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6506_length_503_cov_25.366492:1-503 [pilon] Processing NODE_7781_length_428_cov_63.775244:1-428 [pilon] NODE_7924_length_422_cov_0.840532:1-422 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 11 of 422 bases (2.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7924_length_422_cov_0.840532:1-422 [pilon] Processing NODE_262_length_2304_cov_22.749885:1-2304 [pilon] NODE_1282_length_1348_cov_3.494703:1-1348 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 117, Coverage: 11, minDepth: 5 [pilon] Confirmed 1116 of 1348 bases (82.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1282_length_1348_cov_3.494703:1-1348 [pilon] Processing NODE_6001_length_540_cov_34.353222:1-540 [pilon] NODE_12260_length_243_cov_34.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 92, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12260_length_243_cov_34.295082:1-243 [pilon] Processing NODE_7750_length_429_cov_34.509740:1-429 [pilon] NODE_4270_length_685_cov_1.599291:1-685 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 386 of 685 bases (56.35%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4270_length_685_cov_1.599291:1-685 [pilon] Processing NODE_427_length_1996_cov_25.110400:1-1996 [pilon] NODE_5595_length_571_cov_2.060000:1-571 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 25, Coverage: 5, minDepth: 5 [pilon] Confirmed 291 of 571 bases (50.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5595_length_571_cov_2.060000:1-571 [pilon] Processing NODE_11913_length_249_cov_13.960938:1-249 [pilon] NODE_6167_length_527_cov_15.879310:1-527 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 159, Coverage: 20, minDepth: 5 [pilon] Confirmed 354 of 527 bases (67.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6167_length_527_cov_15.879310:1-527 [pilon] Processing NODE_684_length_1718_cov_2.198497:1-1718 [pilon] NODE_9043_length_364_cov_15.300412:1-364 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 95, Coverage: 17, minDepth: 5 [pilon] Confirmed 252 of 364 bases (69.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9043_length_364_cov_15.300412:1-364 [pilon] Processing NODE_12440_length_243_cov_30.131148:1-243 [pilon] NODE_13022_length_243_cov_22.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13022_length_243_cov_22.704918:1-243 [pilon] Processing NODE_13821_length_243_cov_15.500000:1-243 [pilon] NODE_3457_length_791_cov_3.044776:1-791 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 59, Coverage: 9, minDepth: 5 [pilon] Confirmed 600 of 791 bases (75.85%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3457_length_791_cov_3.044776:1-791 [pilon] Processing NODE_171_length_2591_cov_24.780162:1-2591 [pilon] NODE_3199_length_833_cov_1.188202:1-833 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 31, Coverage: 5, minDepth: 5 [pilon] Confirmed 393 of 833 bases (47.18%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3199_length_833_cov_1.188202:1-833 [pilon] Processing NODE_1494_length_1259_cov_28.036028:1-1259 [pilon] NODE_2877_length_898_cov_10.508366:1-898 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 173, Coverage: 25, minDepth: 6 [pilon] Confirmed 566 of 898 bases (63.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2877_length_898_cov_10.508366:1-898 [pilon] Processing NODE_10518_length_304_cov_1.420765:1-304 [pilon] NODE_11125_length_279_cov_10.613924:1-279 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 28, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11125_length_279_cov_10.613924:1-279 [pilon] Processing NODE_8831_length_375_cov_21.559055:1-375 [pilon] NODE_669_length_1729_cov_20.634328:1-1729 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 861, Coverage: 57, minDepth: 14 [pilon] Confirmed 1520 of 1729 bases (87.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_669_length_1729_cov_20.634328:1-1729 [pilon] Processing NODE_5926_length_546_cov_2.244706:1-546 [pilon] NODE_2522_length_963_cov_0.944181:1-963 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 24, Coverage: 3, minDepth: 5 [pilon] Confirmed 185 of 963 bases (19.21%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2522_length_963_cov_0.944181:1-963 [pilon] Processing NODE_4149_length_699_cov_1.882353:1-699 [pilon] NODE_3783_length_743_cov_3.300643:1-743 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 48, Coverage: 8, minDepth: 5 [pilon] Confirmed 442 of 743 bases (59.49%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3783_length_743_cov_3.300643:1-743 [pilon] Processing NODE_11345_length_270_cov_16.046980:1-270 [pilon] NODE_13103_length_243_cov_21.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13103_length_243_cov_21.918033:1-243 [pilon] Processing NODE_8908_length_371_cov_25.752000:1-371 [pilon] NODE_11435_length_266_cov_15.765517:1-266 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 58, Coverage: 5, minDepth: 5 [pilon] Confirmed 145 of 266 bases (54.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11435_length_266_cov_15.765517:1-266 [pilon] Processing NODE_3625_length_765_cov_1.149068:1-765 [pilon] NODE_10475_length_306_cov_9.189189:1-306 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 40, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10475_length_306_cov_9.189189:1-306 [pilon] Processing NODE_11010_length_284_cov_10.601227:1-284 [pilon] NODE_8887_length_372_cov_26.984064:1-372 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 138, Coverage: 16, minDepth: 5 [pilon] Confirmed 262 of 372 bases (70.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8887_length_372_cov_26.984064:1-372 [pilon] Processing NODE_11926_length_249_cov_9.945312:1-249 [pilon] NODE_12450_length_243_cov_29.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12450_length_243_cov_29.901639:1-243 [pilon] Processing NODE_2559_length_955_cov_15.835731:1-955 [pilon] NODE_12125_length_243_cov_42.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 113, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12125_length_243_cov_42.672131:1-243 [pilon] Processing NODE_13086_length_243_cov_22.081967:1-243 [pilon] NODE_7781_length_428_cov_63.775244:1-428 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 414, Coverage: 84, minDepth: 21 [pilon] Confirmed 362 of 428 bases (84.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7781_length_428_cov_63.775244:1-428 [pilon] Processing NODE_906_length_1552_cov_13.136268:1-1552 [pilon] NODE_841_length_1603_cov_32.439271:1-1603 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 1141, Coverage: 74, minDepth: 19 [pilon] Confirmed 1406 of 1603 bases (87.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_841_length_1603_cov_32.439271:1-1603 [pilon] Processing NODE_820_length_1613_cov_25.926944:1-1613 [pilon] NODE_1491_length_1265_cov_10.116259:1-1265 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 356, Coverage: 27, minDepth: 7 [pilon] Confirmed 1069 of 1265 bases (84.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 1 small deletions totaling 31 bases [pilon] Finished processing NODE_1491_length_1265_cov_10.116259:1-1265 [pilon] Processing NODE_425_length_2003_cov_18.702976:1-2003 [pilon] NODE_141_length_2777_cov_19.844503:1-2777 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 1270, Coverage: 43, minDepth: 11 [pilon] Confirmed 2350 of 2777 bases (84.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_141_length_2777_cov_19.844503:1-2777 [pilon] Processing NODE_9287_length_354_cov_18.596567:1-354 [pilon] NODE_2796_length_909_cov_31.510152:1-909 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 591, Coverage: 74, minDepth: 19 [pilon] Confirmed 754 of 909 bases (82.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2796_length_909_cov_31.510152:1-909 [pilon] Processing NODE_11933_length_248_cov_30.685039:1-248 [pilon] NODE_9239_length_356_cov_37.927660:1-356 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 216, Coverage: 35, minDepth: 9 [pilon] Confirmed 311 of 356 bases (87.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9239_length_356_cov_37.927660:1-356 [pilon] Processing NODE_9911_length_330_cov_9.277512:1-330 [pilon] NODE_427_length_1996_cov_25.110400:1-1996 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 1036, Coverage: 67, minDepth: 17 [pilon] Confirmed 1699 of 1996 bases (85.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_427_length_1996_cov_25.110400:1-1996 [pilon] Processing NODE_6806_length_483_cov_1.505525:1-483 [pilon] NODE_6001_length_540_cov_34.353222:1-540 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 340, Coverage: 42, minDepth: 11 [pilon] Confirmed 460 of 540 bases (85.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6001_length_540_cov_34.353222:1-540 [pilon] Processing NODE_7756_length_429_cov_23.178571:1-429 [pilon] NODE_684_length_1718_cov_2.198497:1-1718 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 113, Coverage: 9, minDepth: 5 [pilon] Confirmed 1324 of 1718 bases (77.07%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_684_length_1718_cov_2.198497:1-1718 [pilon] Processing NODE_10117_length_321_cov_11.820000:1-321 [pilon] NODE_7750_length_429_cov_34.509740:1-429 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 220, Coverage: 32, minDepth: 8 [pilon] Confirmed 302 of 429 bases (70.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7750_length_429_cov_34.509740:1-429 [pilon] Processing NODE_9328_length_353_cov_28.336207:1-353 [pilon] NODE_11913_length_249_cov_13.960938:1-249 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 49, Coverage: 4, minDepth: 5 [pilon] Confirmed 108 of 249 bases (43.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11913_length_249_cov_13.960938:1-249 [pilon] Processing NODE_4385_length_673_cov_1.442029:1-673 [pilon] NODE_262_length_2304_cov_22.749885:1-2304 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 1177, Coverage: 56, minDepth: 14 [pilon] Confirmed 1654 of 2304 bases (71.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_262_length_2304_cov_22.749885:1-2304 [pilon] Processing NODE_3198_length_833_cov_1.403090:1-833 [pilon] NODE_12440_length_243_cov_30.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12440_length_243_cov_30.131148:1-243 [pilon] Processing NODE_9345_length_352_cov_20.493506:1-352 [pilon] NODE_13821_length_243_cov_15.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13821_length_243_cov_15.500000:1-243 [pilon] Processing NODE_534_length_1876_cov_16.720228:1-1876 [pilon] NODE_11345_length_270_cov_16.046980:1-270 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 54, Coverage: 10, minDepth: 5 [pilon] Confirmed 203 of 270 bases (75.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11345_length_270_cov_16.046980:1-270 [pilon] Processing NODE_2023_length_1081_cov_1.733333:1-1081 [pilon] NODE_1494_length_1259_cov_28.036028:1-1259 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 620, Coverage: 38, minDepth: 10 [pilon] Confirmed 993 of 1259 bases (78.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1494_length_1259_cov_28.036028:1-1259 [pilon] Processing NODE_1391_length_1300_cov_7.889737:1-1300 [pilon] NODE_10518_length_304_cov_1.420765:1-304 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 304 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10518_length_304_cov_1.420765:1-304 [pilon] Processing NODE_9105_length_361_cov_18.329167:1-361 [pilon] NODE_3625_length_765_cov_1.149068:1-765 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 367 of 765 bases (47.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3625_length_765_cov_1.149068:1-765 [pilon] Processing NODE_5551_length_574_cov_1.479029:1-574 [pilon] NODE_8831_length_375_cov_21.559055:1-375 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 125, Coverage: 17, minDepth: 5 [pilon] Confirmed 301 of 375 bases (80.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8831_length_375_cov_21.559055:1-375 [pilon] Processing NODE_12550_length_243_cov_28.278689:1-243 [pilon] NODE_5926_length_546_cov_2.244706:1-546 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 29, Coverage: 6, minDepth: 5 [pilon] Confirmed 322 of 546 bases (58.97%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5926_length_546_cov_2.244706:1-546 [pilon] Processing NODE_13015_length_243_cov_22.754098:1-243 [pilon] NODE_171_length_2591_cov_24.780162:1-2591 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 1513, Coverage: 64, minDepth: 16 [pilon] Confirmed 2300 of 2591 bases (88.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_171_length_2591_cov_24.780162:1-2591 [pilon] Processing NODE_2305_length_1009_cov_10.860360:1-1009 [pilon] NODE_4149_length_699_cov_1.882353:1-699 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 43, Coverage: 6, minDepth: 5 [pilon] Confirmed 366 of 699 bases (52.36%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4149_length_699_cov_1.882353:1-699 [pilon] Processing NODE_13470_length_243_cov_18.696721:1-243 [pilon] NODE_11010_length_284_cov_10.601227:1-284 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 36, Coverage: 3, minDepth: 5 [pilon] Confirmed 59 of 284 bases (20.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11010_length_284_cov_10.601227:1-284 [pilon] Processing NODE_8774_length_378_cov_21.299611:1-378 [pilon] NODE_8908_length_371_cov_25.752000:1-371 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 147, Coverage: 15, minDepth: 5 [pilon] Confirmed 325 of 371 bases (87.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8908_length_371_cov_25.752000:1-371 [pilon] Processing NODE_10792_length_294_cov_8.560694:1-294 [pilon] NODE_9287_length_354_cov_18.596567:1-354 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 96, Coverage: 2, minDepth: 5 [pilon] Confirmed 107 of 354 bases (30.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9287_length_354_cov_18.596567:1-354 [pilon] Processing NODE_10149_length_319_cov_28.944444:1-319 [pilon] NODE_11926_length_249_cov_9.945312:1-249 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 32, Coverage: 3, minDepth: 5 [pilon] Confirmed 117 of 249 bases (46.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11926_length_249_cov_9.945312:1-249 [pilon] Processing NODE_12551_length_243_cov_28.278689:1-243 [pilon] NODE_13086_length_243_cov_22.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13086_length_243_cov_22.081967:1-243 [pilon] Processing NODE_1373_length_1309_cov_2.989899:1-1309 [pilon] NODE_2559_length_955_cov_15.835731:1-955 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 321, Coverage: 10, minDepth: 5 [pilon] Confirmed 629 of 955 bases (65.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2559_length_955_cov_15.835731:1-955 [pilon] Processing NODE_14212_length_243_cov_12.516393:1-243 [pilon] NODE_11933_length_248_cov_30.685039:1-248 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 76, Coverage: 7, minDepth: 5 [pilon] Confirmed 164 of 248 bases (66.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11933_length_248_cov_30.685039:1-248 [pilon] Processing NODE_6364_length_513_cov_1.035714:1-513 [pilon] NODE_6806_length_483_cov_1.505525:1-483 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 119 of 483 bases (24.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6806_length_483_cov_1.505525:1-483 [pilon] Processing NODE_3334_length_808_cov_22.911208:1-808 [pilon] NODE_906_length_1552_cov_13.136268:1-1552 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 431, Coverage: 29, minDepth: 7 [pilon] Confirmed 1341 of 1552 bases (86.40%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_906_length_1552_cov_13.136268:1-1552 [pilon] Processing NODE_9622_length_341_cov_11.690909:1-341 [pilon] NODE_820_length_1613_cov_25.926944:1-1613 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 993, Coverage: 50, minDepth: 13 [pilon] Confirmed 1318 of 1613 bases (81.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_820_length_1613_cov_25.926944:1-1613 [pilon] Processing NODE_1469_length_1275_cov_11.216638:1-1275 [pilon] NODE_10117_length_321_cov_11.820000:1-321 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 56, Coverage: 4, minDepth: 5 [pilon] Confirmed 145 of 321 bases (45.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10117_length_321_cov_11.820000:1-321 [pilon] Processing NODE_11410_length_267_cov_16.020548:1-267 [pilon] NODE_425_length_2003_cov_18.702976:1-2003 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 808, Coverage: 47, minDepth: 12 [pilon] Confirmed 1707 of 2003 bases (85.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_425_length_2003_cov_18.702976:1-2003 [pilon] Processing NODE_6038_length_537_cov_20.137019:1-537 [pilon] NODE_9911_length_330_cov_9.277512:1-330 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 50, Coverage: 5, minDepth: 5 [pilon] Confirmed 168 of 330 bases (50.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9911_length_330_cov_9.277512:1-330 [pilon] Processing NODE_3008_length_872_cov_0.470040:1-872 [pilon] NODE_7756_length_429_cov_23.178571:1-429 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 164, Coverage: 11, minDepth: 5 [pilon] Confirmed 249 of 429 bases (58.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7756_length_429_cov_23.178571:1-429 [pilon] Processing NODE_13985_length_243_cov_14.254098:1-243 [pilon] NODE_4385_length_673_cov_1.442029:1-673 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 171 of 673 bases (25.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4385_length_673_cov_1.442029:1-673 [pilon] Processing NODE_7413_length_447_cov_24.579755:1-447 [pilon] NODE_3198_length_833_cov_1.403090:1-833 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 38, Coverage: 6, minDepth: 5 [pilon] Confirmed 364 of 833 bases (43.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3198_length_833_cov_1.403090:1-833 [pilon] Processing NODE_5824_length_554_cov_1.875289:1-554 [pilon] NODE_9328_length_353_cov_28.336207:1-353 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 120, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 353 bases (42.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9328_length_353_cov_28.336207:1-353 [pilon] Processing NODE_5450_length_580_cov_50.657952:1-580 [pilon] NODE_1391_length_1300_cov_7.889737:1-1300 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 254, Coverage: 20, minDepth: 5 [pilon] Confirmed 1067 of 1300 bases (82.08%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1391_length_1300_cov_7.889737:1-1300 [pilon] Processing NODE_14932_length_243_cov_6.377049:1-243 [pilon] NODE_9345_length_352_cov_20.493506:1-352 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 115, Coverage: 20, minDepth: 5 [pilon] Confirmed 312 of 352 bases (88.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9345_length_352_cov_20.493506:1-352 [pilon] Processing NODE_12184_length_243_cov_37.352459:1-243 [pilon] NODE_2023_length_1081_cov_1.733333:1-1081 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 55, Coverage: 6, minDepth: 5 [pilon] Confirmed 760 of 1081 bases (70.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2023_length_1081_cov_1.733333:1-1081 [pilon] Processing NODE_12067_length_245_cov_13.451613:1-245 [pilon] NODE_13470_length_243_cov_18.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13470_length_243_cov_18.696721:1-243 [pilon] Processing NODE_14431_length_243_cov_10.811475:1-243 [pilon] NODE_10149_length_319_cov_28.944444:1-319 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 127, Coverage: 13, minDepth: 5 [pilon] Confirmed 248 of 319 bases (77.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10149_length_319_cov_28.944444:1-319 [pilon] Processing NODE_2692_length_930_cov_25.144623:1-930 [pilon] NODE_2305_length_1009_cov_10.860360:1-1009 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 220, Coverage: 22, minDepth: 6 [pilon] Confirmed 716 of 1009 bases (70.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2305_length_1009_cov_10.860360:1-1009 [pilon] Processing NODE_11950_length_247_cov_18.928571:1-247 [pilon] NODE_9105_length_361_cov_18.329167:1-361 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 136, Coverage: 8, minDepth: 5 [pilon] Confirmed 201 of 361 bases (55.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9105_length_361_cov_18.329167:1-361 [pilon] Processing NODE_4316_length_679_cov_2.123656:1-679 [pilon] NODE_534_length_1876_cov_16.720228:1-1876 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 666, Coverage: 40, minDepth: 10 [pilon] Confirmed 1647 of 1876 bases (87.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_534_length_1876_cov_16.720228:1-1876 [pilon] Processing NODE_4088_length_706_cov_16.791453:1-706 [pilon] NODE_1373_length_1309_cov_2.989899:1-1309 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 93, Coverage: 9, minDepth: 5 [pilon] Confirmed 1058 of 1309 bases (80.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1373_length_1309_cov_2.989899:1-1309 [pilon] Processing NODE_5112_length_609_cov_7.034836:1-609 [pilon] NODE_12550_length_243_cov_28.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12550_length_243_cov_28.278689:1-243 [pilon] Processing NODE_4486_length_663_cov_10.453875:1-663 [pilon] NODE_5551_length_574_cov_1.479029:1-574 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 36, Coverage: 4, minDepth: 5 [pilon] Confirmed 305 of 574 bases (53.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5551_length_574_cov_1.479029:1-574 [pilon] Processing NODE_14235_length_243_cov_12.336066:1-243 [pilon] NODE_13015_length_243_cov_22.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13015_length_243_cov_22.754098:1-243 [pilon] Processing NODE_9113_length_360_cov_54.790795:1-360 [pilon] NODE_8774_length_378_cov_21.299611:1-378 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 103, Coverage: 18, minDepth: 5 [pilon] Confirmed 307 of 378 bases (81.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8774_length_378_cov_21.299611:1-378 [pilon] Processing NODE_5013_length_617_cov_33.808468:1-617 [pilon] NODE_10792_length_294_cov_8.560694:1-294 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 294 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10792_length_294_cov_8.560694:1-294 [pilon] Processing NODE_5227_length_599_cov_3.765690:1-599 [pilon] NODE_12551_length_243_cov_28.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12551_length_243_cov_28.278689:1-243 [pilon] Processing NODE_4303_length_681_cov_2.835714:1-681 [pilon] NODE_14212_length_243_cov_12.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14212_length_243_cov_12.516393:1-243 [pilon] Processing NODE_5739_length_560_cov_18.731207:1-560 [pilon] NODE_6364_length_513_cov_1.035714:1-513 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 28 of 513 bases (5.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6364_length_513_cov_1.035714:1-513 [pilon] Processing NODE_10223_length_316_cov_6.389744:1-316 [pilon] NODE_14932_length_243_cov_6.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14932_length_243_cov_6.377049:1-243 [pilon] Processing NODE_6005_length_540_cov_17.009547:1-540 [pilon] NODE_9622_length_341_cov_11.690909:1-341 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 185 of 341 bases (54.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9622_length_341_cov_11.690909:1-341 [pilon] Processing NODE_6179_length_526_cov_1.543210:1-526 [pilon] NODE_3334_length_808_cov_22.911208:1-808 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 375, Coverage: 40, minDepth: 10 [pilon] Confirmed 754 of 808 bases (93.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3334_length_808_cov_22.911208:1-808 [pilon] Processing NODE_14762_length_243_cov_8.024590:1-243 [pilon] NODE_1469_length_1275_cov_11.216638:1-1275 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 348, Coverage: 29, minDepth: 7 [pilon] Confirmed 1115 of 1275 bases (87.45%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1469_length_1275_cov_11.216638:1-1275 [pilon] Processing NODE_6926_length_476_cov_3.608451:1-476 [pilon] NODE_5824_length_554_cov_1.875289:1-554 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 30, Coverage: 7, minDepth: 5 [pilon] Confirmed 354 of 554 bases (63.90%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5824_length_554_cov_1.875289:1-554 [pilon] Processing NODE_8641_length_386_cov_13.241509:1-386 [pilon] NODE_11410_length_267_cov_16.020548:1-267 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 48, Coverage: 5, minDepth: 5 [pilon] Confirmed 157 of 267 bases (58.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11410_length_267_cov_16.020548:1-267 [pilon] Processing NODE_5425_length_582_cov_19.537961:1-582 [pilon] NODE_6038_length_537_cov_20.137019:1-537 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 195, Coverage: 12, minDepth: 5 [pilon] Confirmed 409 of 537 bases (76.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6038_length_537_cov_20.137019:1-537 [pilon] Processing NODE_6859_length_480_cov_15.270195:1-480 [pilon] NODE_13985_length_243_cov_14.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13985_length_243_cov_14.254098:1-243 [pilon] Processing NODE_2487_length_970_cov_11.440518:1-970 [pilon] NODE_3008_length_872_cov_0.470040:1-872 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 872 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3008_length_872_cov_0.470040:1-872 [pilon] Processing NODE_12952_length_243_cov_23.401639:1-243 [pilon] NODE_7413_length_447_cov_24.579755:1-447 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 194, Coverage: 14, minDepth: 5 [pilon] Confirmed 316 of 447 bases (70.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7413_length_447_cov_24.579755:1-447 [pilon] Processing NODE_3337_length_807_cov_23.255102:1-807 [pilon] NODE_5450_length_580_cov_50.657952:1-580 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 539, Coverage: 91, minDepth: 23 [pilon] Confirmed 500 of 580 bases (86.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5450_length_580_cov_50.657952:1-580 [pilon] Processing NODE_13986_length_243_cov_14.254098:1-243 [pilon] NODE_12184_length_243_cov_37.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 97, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12184_length_243_cov_37.352459:1-243 [pilon] Processing NODE_6670_length_492_cov_23.207547:1-492 [pilon] NODE_5112_length_609_cov_7.034836:1-609 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 95, Coverage: 19, minDepth: 5 [pilon] Confirmed 495 of 609 bases (81.28%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5112_length_609_cov_7.034836:1-609 [pilon] Processing NODE_14451_length_243_cov_10.672131:1-243 [pilon] NODE_9113_length_360_cov_54.790795:1-360 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 299, Coverage: 52, minDepth: 13 [pilon] Confirmed 323 of 360 bases (89.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9113_length_360_cov_54.790795:1-360 [pilon] Processing NODE_3482_length_787_cov_30.761261:1-787 [pilon] NODE_12067_length_245_cov_13.451613:1-245 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 245 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12067_length_245_cov_13.451613:1-245 [pilon] Processing NODE_1169_length_1410_cov_19.251358:1-1410 [pilon] NODE_5013_length_617_cov_33.808468:1-617 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 394, Coverage: 50, minDepth: 13 [pilon] Confirmed 508 of 617 bases (82.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5013_length_617_cov_33.808468:1-617 [pilon] Processing NODE_10079_length_322_cov_12.179104:1-322 [pilon] NODE_14431_length_243_cov_10.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14431_length_243_cov_10.811475:1-243 [pilon] Processing NODE_11957_length_247_cov_8.928571:1-247 [pilon] NODE_2692_length_930_cov_25.144623:1-930 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 527, Coverage: 68, minDepth: 17 [pilon] Confirmed 666 of 930 bases (71.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2692_length_930_cov_25.144623:1-930 [pilon] Processing NODE_1477_length_1271_cov_12.527826:1-1271 [pilon] NODE_14235_length_243_cov_12.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14235_length_243_cov_12.336066:1-243 [pilon] Processing NODE_4520_length_660_cov_1.395176:1-660 [pilon] NODE_11950_length_247_cov_18.928571:1-247 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 62, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 247 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11950_length_247_cov_18.928571:1-247 [pilon] Processing NODE_8729_length_381_cov_12.542308:1-381 [pilon] NODE_4088_length_706_cov_16.791453:1-706 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 261, Coverage: 31, minDepth: 8 [pilon] Confirmed 560 of 706 bases (79.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4088_length_706_cov_16.791453:1-706 [pilon] Processing NODE_6657_length_493_cov_12.548387:1-493 [pilon] NODE_4316_length_679_cov_2.123656:1-679 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 41, Coverage: 8, minDepth: 5 [pilon] Confirmed 494 of 679 bases (72.75%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4316_length_679_cov_2.123656:1-679 [pilon] Processing NODE_831_length_1610_cov_31.977166:1-1610 [pilon] NODE_6005_length_540_cov_17.009547:1-540 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 172, Coverage: 19, minDepth: 5 [pilon] Confirmed 385 of 540 bases (71.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6005_length_540_cov_17.009547:1-540 [pilon] Processing NODE_7630_length_436_cov_2.736508:1-436 [pilon] NODE_4486_length_663_cov_10.453875:1-663 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 151, Coverage: 12, minDepth: 5 [pilon] Confirmed 538 of 663 bases (81.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4486_length_663_cov_10.453875:1-663 [pilon] Processing NODE_9504_length_345_cov_27.285714:1-345 [pilon] NODE_2487_length_970_cov_11.440518:1-970 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 289, Coverage: 26, minDepth: 7 [pilon] Confirmed 874 of 970 bases (90.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2487_length_970_cov_11.440518:1-970 [pilon] Processing NODE_10941_length_286_cov_18.515152:1-286 [pilon] NODE_5227_length_599_cov_3.765690:1-599 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 54, Coverage: 12, minDepth: 5 [pilon] Confirmed 437 of 599 bases (72.95%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5227_length_599_cov_3.765690:1-599 [pilon] Processing NODE_11201_length_276_cov_12.806452:1-276 [pilon] NODE_4303_length_681_cov_2.835714:1-681 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 346 of 681 bases (50.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4303_length_681_cov_2.835714:1-681 [pilon] Processing NODE_6952_length_474_cov_14.883853:1-474 [pilon] NODE_5739_length_560_cov_18.731207:1-560 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 185, Coverage: 33, minDepth: 8 [pilon] Confirmed 471 of 560 bases (84.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5739_length_560_cov_18.731207:1-560 [pilon] Processing NODE_8488_length_394_cov_52.175824:1-394 [pilon] NODE_10223_length_316_cov_6.389744:1-316 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 26, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 316 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10223_length_316_cov_6.389744:1-316 [pilon] Processing NODE_13263_length_243_cov_20.483607:1-243 [pilon] NODE_14762_length_243_cov_8.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14762_length_243_cov_8.024590:1-243 [pilon] Processing NODE_6123_length_530_cov_17.070905:1-530 [pilon] NODE_6179_length_526_cov_1.543210:1-526 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 170 of 526 bases (32.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6179_length_526_cov_1.543210:1-526 [pilon] NODE_6926_length_476_cov_3.608451:1-476 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 28, Coverage: 1, minDepth: 5 [pilon] Confirmed 43 of 476 bases (9.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6926_length_476_cov_3.608451:1-476 [pilon] Processing NODE_9505_length_345_cov_26.397321:1-345 [pilon] Processing NODE_11252_length_273_cov_23.513158:1-273 [pilon] NODE_10079_length_322_cov_12.179104:1-322 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 48, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 322 bases (40.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10079_length_322_cov_12.179104:1-322 [pilon] Processing NODE_3771_length_744_cov_26.858748:1-744 [pilon] NODE_8641_length_386_cov_13.241509:1-386 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 105, Coverage: 15, minDepth: 5 [pilon] Confirmed 337 of 386 bases (87.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8641_length_386_cov_13.241509:1-386 [pilon] Processing NODE_2065_length_1068_cov_30.678986:1-1068 [pilon] NODE_3482_length_787_cov_30.761261:1-787 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 479, Coverage: 42, minDepth: 11 [pilon] Confirmed 639 of 787 bases (81.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3482_length_787_cov_30.761261:1-787 [pilon] Processing NODE_14950_length_243_cov_6.122951:1-243 [pilon] NODE_5425_length_582_cov_19.537961:1-582 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 209, Coverage: 18, minDepth: 5 [pilon] Confirmed 463 of 582 bases (79.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5425_length_582_cov_19.537961:1-582 [pilon] Processing NODE_6946_length_474_cov_29.215297:1-474 [pilon] NODE_6859_length_480_cov_15.270195:1-480 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 124, Coverage: 13, minDepth: 5 [pilon] Confirmed 330 of 480 bases (68.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6859_length_480_cov_15.270195:1-480 [pilon] Processing NODE_3159_length_840_cov_20.968011:1-840 [pilon] NODE_3337_length_807_cov_23.255102:1-807 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 379, Coverage: 48, minDepth: 12 [pilon] Confirmed 675 of 807 bases (83.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3337_length_807_cov_23.255102:1-807 [pilon] Processing NODE_8015_length_417_cov_28.260135:1-417 [pilon] NODE_14451_length_243_cov_10.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14451_length_243_cov_10.672131:1-243 [pilon] Processing NODE_596_length_1814_cov_11.843473:1-1814 [pilon] NODE_12952_length_243_cov_23.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12952_length_243_cov_23.401639:1-243 [pilon] Processing NODE_10024_length_324_cov_22.458128:1-324 [pilon] NODE_13986_length_243_cov_14.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13986_length_243_cov_14.254098:1-243 [pilon] Processing NODE_9503_length_345_cov_27.513393:1-345 [pilon] NODE_7630_length_436_cov_2.736508:1-436 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 16, Coverage: 5, minDepth: 5 [pilon] Confirmed 224 of 436 bases (51.38%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7630_length_436_cov_2.736508:1-436 [pilon] Processing NODE_9527_length_345_cov_13.598214:1-345 [pilon] NODE_6670_length_492_cov_23.207547:1-492 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 207, Coverage: 20, minDepth: 5 [pilon] Confirmed 324 of 492 bases (65.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6670_length_492_cov_23.207547:1-492 [pilon] Processing NODE_10860_length_290_cov_9.698225:1-290 [pilon] NODE_1169_length_1410_cov_19.251358:1-1410 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 391, Coverage: 11, minDepth: 5 [pilon] Confirmed 817 of 1410 bases (57.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1169_length_1410_cov_19.251358:1-1410 [pilon] Processing NODE_4945_length_623_cov_0.870518:1-623 [pilon] NODE_11957_length_247_cov_8.928571:1-247 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 33, Coverage: 3, minDepth: 5 [pilon] Confirmed 66 of 247 bases (26.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11957_length_247_cov_8.928571:1-247 [pilon] Processing NODE_9316_length_354_cov_7.609442:1-354 [pilon] NODE_4520_length_660_cov_1.395176:1-660 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 317 of 660 bases (48.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4520_length_660_cov_1.395176:1-660 [pilon] Processing NODE_1443_length_1283_cov_21.267642:1-1283 [pilon] NODE_1477_length_1271_cov_12.527826:1-1271 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 359, Coverage: 31, minDepth: 8 [pilon] Confirmed 1176 of 1271 bases (92.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1477_length_1271_cov_12.527826:1-1271 [pilon] Processing NODE_2598_length_945_cov_28.018204:1-945 [pilon] NODE_8729_length_381_cov_12.542308:1-381 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 80, Coverage: 13, minDepth: 5 [pilon] Confirmed 280 of 381 bases (73.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8729_length_381_cov_12.542308:1-381 [pilon] Processing NODE_12708_length_243_cov_26.106557:1-243 [pilon] NODE_6657_length_493_cov_12.548387:1-493 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 129, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 493 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6657_length_493_cov_12.548387:1-493 [pilon] Processing NODE_4816_length_633_cov_22.603516:1-633 [pilon] NODE_9504_length_345_cov_27.285714:1-345 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 147, Coverage: 17, minDepth: 5 [pilon] Confirmed 311 of 345 bases (90.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9504_length_345_cov_27.285714:1-345 [pilon] Processing NODE_4172_length_696_cov_50.606957:1-696 [pilon] NODE_831_length_1610_cov_31.977166:1-1610 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 1146, Coverage: 62, minDepth: 16 [pilon] Confirmed 1360 of 1610 bases (84.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_831_length_1610_cov_31.977166:1-1610 [pilon] Processing NODE_7997_length_418_cov_20.589226:1-418 [pilon] NODE_10941_length_286_cov_18.515152:1-286 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 86, Coverage: 8, minDepth: 5 [pilon] Confirmed 215 of 286 bases (75.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10941_length_286_cov_18.515152:1-286 [pilon] Processing NODE_13033_length_243_cov_22.614754:1-243 [pilon] NODE_9505_length_345_cov_26.397321:1-345 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 144, Coverage: 19, minDepth: 5 [pilon] Confirmed 269 of 345 bases (77.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9505_length_345_cov_26.397321:1-345 [pilon] Processing NODE_2915_length_889_cov_49.102865:1-889 [pilon] NODE_14950_length_243_cov_6.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14950_length_243_cov_6.122951:1-243 [pilon] Processing NODE_13096_length_243_cov_22.008197:1-243 [pilon] NODE_11201_length_276_cov_12.806452:1-276 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 34, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11201_length_276_cov_12.806452:1-276 [pilon] Processing NODE_1425_length_1291_cov_2.900855:1-1291 [pilon] NODE_8488_length_394_cov_52.175824:1-394 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 344, Coverage: 48, minDepth: 12 [pilon] Confirmed 341 of 394 bases (86.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8488_length_394_cov_52.175824:1-394 [pilon] Processing NODE_10675_length_299_cov_14.483146:1-299 [pilon] NODE_13263_length_243_cov_20.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13263_length_243_cov_20.483607:1-243 [pilon] Processing NODE_667_length_1731_cov_13.938509:1-1731 [pilon] NODE_6952_length_474_cov_14.883853:1-474 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 141, Coverage: 7, minDepth: 5 [pilon] Confirmed 283 of 474 bases (59.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6952_length_474_cov_14.883853:1-474 [pilon] Processing NODE_13175_length_243_cov_21.311475:1-243 [pilon] NODE_11252_length_273_cov_23.513158:1-273 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 70, Coverage: 4, minDepth: 5 [pilon] Confirmed 129 of 273 bases (47.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11252_length_273_cov_23.513158:1-273 [pilon] Processing NODE_13052_length_243_cov_22.368852:1-243 [pilon] NODE_9503_length_345_cov_27.513393:1-345 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 149, Coverage: 15, minDepth: 5 [pilon] Confirmed 214 of 345 bases (62.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9503_length_345_cov_27.513393:1-345 [pilon] Processing NODE_1865_length_1123_cov_31.029940:1-1123 [pilon] NODE_9527_length_345_cov_13.598214:1-345 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 183 of 345 bases (53.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9527_length_345_cov_13.598214:1-345 [pilon] Processing NODE_4607_length_652_cov_9.419962:1-652 [pilon] NODE_6123_length_530_cov_17.070905:1-530 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 156, Coverage: 13, minDepth: 5 [pilon] Confirmed 381 of 530 bases (71.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6123_length_530_cov_17.070905:1-530 [pilon] Processing NODE_11060_length_281_cov_8.456250:1-281 [pilon] NODE_596_length_1814_cov_11.843473:1-1814 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 509, Coverage: 31, minDepth: 8 [pilon] Confirmed 1538 of 1814 bases (84.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_596_length_1814_cov_11.843473:1-1814 [pilon] Processing NODE_10957_length_285_cov_25.121951:1-285 [pilon] NODE_3771_length_744_cov_26.858748:1-744 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 365, Coverage: 44, minDepth: 11 [pilon] Confirmed 695 of 744 bases (93.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3771_length_744_cov_26.858748:1-744 [pilon] Processing NODE_3004_length_873_cov_3.831117:1-873 [pilon] NODE_10024_length_324_cov_22.458128:1-324 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 80, Coverage: 2, minDepth: 5 [pilon] Confirmed 114 of 324 bases (35.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10024_length_324_cov_22.458128:1-324 [pilon] Processing NODE_10060_length_323_cov_12.856436:1-323 [pilon] NODE_6946_length_474_cov_29.215297:1-474 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 239, Coverage: 24, minDepth: 6 [pilon] Confirmed 393 of 474 bases (82.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6946_length_474_cov_29.215297:1-474 [pilon] NODE_2065_length_1068_cov_30.678986:1-1068 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 753, Coverage: 76, minDepth: 19 [pilon] Confirmed 848 of 1068 bases (79.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2065_length_1068_cov_30.678986:1-1068 [pilon] Processing NODE_14879_length_243_cov_6.918033:1-243 [pilon] Processing NODE_9305_length_354_cov_14.188841:1-354 [pilon] NODE_3159_length_840_cov_20.968011:1-840 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 367, Coverage: 30, minDepth: 8 [pilon] Confirmed 638 of 840 bases (75.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3159_length_840_cov_20.968011:1-840 [pilon] Processing NODE_9905_length_330_cov_12.923445:1-330 [pilon] NODE_8015_length_417_cov_28.260135:1-417 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 224, Coverage: 16, minDepth: 5 [pilon] Confirmed 181 of 417 bases (43.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8015_length_417_cov_28.260135:1-417 [pilon] Processing NODE_681_length_1719_cov_12.461202:1-1719 [pilon] NODE_10860_length_290_cov_9.698225:1-290 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 41, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 290 bases (44.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10860_length_290_cov_9.698225:1-290 [pilon] Processing NODE_3773_length_744_cov_11.300161:1-744 [pilon] NODE_13096_length_243_cov_22.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13096_length_243_cov_22.008197:1-243 [pilon] Processing NODE_14618_length_243_cov_9.262295:1-243 [pilon] NODE_4945_length_623_cov_0.870518:1-623 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 19 of 623 bases (3.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4945_length_623_cov_0.870518:1-623 [pilon] Processing NODE_8283_length_405_cov_14.517606:1-405 [pilon] NODE_9316_length_354_cov_7.609442:1-354 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 354 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9316_length_354_cov_7.609442:1-354 [pilon] Processing NODE_3651_length_762_cov_1.789392:1-762 [pilon] NODE_2915_length_889_cov_49.102865:1-889 log: [pilon] frags shovill.bam: coverage 102 [pilon] Total Reads: 820, Coverage: 102, minDepth: 26 [pilon] Confirmed 746 of 889 bases (83.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2915_length_889_cov_49.102865:1-889 [pilon] Processing NODE_6505_length_503_cov_29.620419:1-503 [pilon] NODE_7997_length_418_cov_20.589226:1-418 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 152, Coverage: 23, minDepth: 6 [pilon] Confirmed 320 of 418 bases (76.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7997_length_418_cov_20.589226:1-418 [pilon] Processing NODE_3339_length_807_cov_16.701166:1-807 [pilon] NODE_2598_length_945_cov_28.018204:1-945 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 511, Coverage: 52, minDepth: 13 [pilon] Confirmed 894 of 945 bases (94.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2598_length_945_cov_28.018204:1-945 [pilon] Processing NODE_10988_length_285_cov_11.359756:1-285 [pilon] NODE_12708_length_243_cov_26.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12708_length_243_cov_26.106557:1-243 [pilon] Processing NODE_8423_length_398_cov_25.848375:1-398 [pilon] NODE_4607_length_652_cov_9.419962:1-652 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 120, Coverage: 12, minDepth: 5 [pilon] Confirmed 499 of 652 bases (76.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4607_length_652_cov_9.419962:1-652 [pilon] Processing NODE_10080_length_322_cov_10.696517:1-322 [pilon] NODE_1865_length_1123_cov_31.029940:1-1123 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 731, Coverage: 52, minDepth: 13 [pilon] Confirmed 916 of 1123 bases (81.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1865_length_1123_cov_31.029940:1-1123 [pilon] Processing NODE_8014_length_417_cov_30.202703:1-417 [pilon] NODE_1443_length_1283_cov_21.267642:1-1283 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 621, Coverage: 43, minDepth: 11 [pilon] Confirmed 956 of 1283 bases (74.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1443_length_1283_cov_21.267642:1-1283 [pilon] Processing NODE_12632_length_243_cov_27.155738:1-243 [pilon] NODE_4172_length_696_cov_50.606957:1-696 log: [pilon] frags shovill.bam: coverage 89 [pilon] Total Reads: 663, Coverage: 89, minDepth: 22 [pilon] Confirmed 619 of 696 bases (88.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4172_length_696_cov_50.606957:1-696 [pilon] Processing NODE_13960_length_243_cov_14.450820:1-243 [pilon] NODE_4816_length_633_cov_22.603516:1-633 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 270, Coverage: 28, minDepth: 7 [pilon] Confirmed 408 of 633 bases (64.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4816_length_633_cov_22.603516:1-633 [pilon] Processing NODE_111_length_2926_cov_2.028520:1-2926 [pilon] NODE_13033_length_243_cov_22.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13033_length_243_cov_22.614754:1-243 [pilon] Processing NODE_10971_length_285_cov_18.932927:1-285 [pilon] NODE_10957_length_285_cov_25.121951:1-285 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 92, Coverage: 10, minDepth: 5 [pilon] Confirmed 233 of 285 bases (81.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10957_length_285_cov_25.121951:1-285 [pilon] Processing NODE_6420_length_509_cov_27.927835:1-509 [pilon] NODE_10675_length_299_cov_14.483146:1-299 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 65, Coverage: 5, minDepth: 5 [pilon] Confirmed 173 of 299 bases (57.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10675_length_299_cov_14.483146:1-299 [pilon] Processing NODE_7358_length_450_cov_17.173252:1-450 [pilon] NODE_1425_length_1291_cov_2.900855:1-1291 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 114, Coverage: 11, minDepth: 5 [pilon] Confirmed 1106 of 1291 bases (85.67%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1425_length_1291_cov_2.900855:1-1291 [pilon] Processing NODE_7217_length_459_cov_15.695266:1-459 [pilon] NODE_13175_length_243_cov_21.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13175_length_243_cov_21.311475:1-243 [pilon] Processing NODE_9306_length_354_cov_14.163090:1-354 [pilon] NODE_667_length_1731_cov_13.938509:1-1731 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 502, Coverage: 37, minDepth: 9 [pilon] Confirmed 1400 of 1731 bases (80.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_667_length_1731_cov_13.938509:1-1731 [pilon] Processing NODE_10511_length_304_cov_12.256831:1-304 [pilon] NODE_13052_length_243_cov_22.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13052_length_243_cov_22.368852:1-243 [pilon] Processing NODE_67_length_3334_cov_2.187675:1-3334 [pilon] NODE_10060_length_323_cov_12.856436:1-323 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 56, Coverage: 7, minDepth: 5 [pilon] Confirmed 215 of 323 bases (66.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10060_length_323_cov_12.856436:1-323 [pilon] Processing NODE_293_length_2250_cov_27.383279:1-2250 [pilon] NODE_14879_length_243_cov_6.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_9905_length_330_cov_12.923445:1-330 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 39, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 330 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9905_length_330_cov_12.923445:1-330 [pilon] Finished processing NODE_14879_length_243_cov_6.918033:1-243 [pilon] Processing NODE_13508_length_243_cov_18.311475:1-243 [pilon] Processing NODE_10407_length_308_cov_62.475936:1-308 [pilon] NODE_11060_length_281_cov_8.456250:1-281 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 281 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11060_length_281_cov_8.456250:1-281 [pilon] Processing NODE_798_length_1627_cov_18.073705:1-1627 [pilon] NODE_681_length_1719_cov_12.461202:1-1719 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 498, Coverage: 20, minDepth: 5 [pilon] Confirmed 1421 of 1719 bases (82.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_681_length_1719_cov_12.461202:1-1719 [pilon] Processing NODE_9509_length_345_cov_21.821429:1-345 [pilon] NODE_3004_length_873_cov_3.831117:1-873 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 67, Coverage: 8, minDepth: 5 [pilon] Confirmed 641 of 873 bases (73.42%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3004_length_873_cov_3.831117:1-873 [pilon] Processing NODE_3605_length_768_cov_2.775889:1-768 [pilon] NODE_9305_length_354_cov_14.188841:1-354 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 75, Coverage: 8, minDepth: 5 [pilon] Confirmed 244 of 354 bases (68.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9305_length_354_cov_14.188841:1-354 [pilon] Processing NODE_3795_length_741_cov_14.419355:1-741 [pilon] NODE_6505_length_503_cov_29.620419:1-503 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 297, Coverage: 31, minDepth: 8 [pilon] Confirmed 315 of 503 bases (62.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6505_length_503_cov_29.620419:1-503 [pilon] Processing NODE_477_length_1939_cov_17.620462:1-1939 [pilon] NODE_14618_length_243_cov_9.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14618_length_243_cov_9.262295:1-243 [pilon] Processing NODE_8597_length_388_cov_29.352060:1-388 [pilon] NODE_10080_length_322_cov_10.696517:1-322 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 52, Coverage: 4, minDepth: 5 [pilon] Confirmed 152 of 322 bases (47.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10080_length_322_cov_10.696517:1-322 [pilon] Processing NODE_3525_length_780_cov_13.978756:1-780 [pilon] NODE_8014_length_417_cov_30.202703:1-417 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 194, Coverage: 28, minDepth: 7 [pilon] Confirmed 302 of 417 bases (72.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8014_length_417_cov_30.202703:1-417 [pilon] Processing NODE_7134_length_463_cov_41.011696:1-463 [pilon] NODE_8283_length_405_cov_14.517606:1-405 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 102, Coverage: 13, minDepth: 5 [pilon] Confirmed 338 of 405 bases (83.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8283_length_405_cov_14.517606:1-405 [pilon] Processing NODE_10482_length_306_cov_7.491892:1-306 [pilon] NODE_3773_length_744_cov_11.300161:1-744 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 157, Coverage: 17, minDepth: 5 [pilon] Confirmed 674 of 744 bases (90.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3773_length_744_cov_11.300161:1-744 [pilon] Processing NODE_3569_length_774_cov_16.943338:1-774 [pilon] NODE_6420_length_509_cov_27.927835:1-509 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 254, Coverage: 47, minDepth: 12 [pilon] Confirmed 417 of 509 bases (81.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6420_length_509_cov_27.927835:1-509 [pilon] Processing NODE_14195_length_243_cov_12.663934:1-243 [pilon] NODE_3651_length_762_cov_1.789392:1-762 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 29, Coverage: 4, minDepth: 5 [pilon] Confirmed 276 of 762 bases (36.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3651_length_762_cov_1.789392:1-762 [pilon] Processing NODE_6309_length_517_cov_2.744949:1-517 [pilon] NODE_3339_length_807_cov_16.701166:1-807 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 270, Coverage: 34, minDepth: 9 [pilon] Confirmed 671 of 807 bases (83.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3339_length_807_cov_16.701166:1-807 [pilon] Processing NODE_2940_length_884_cov_2.225426:1-884 [pilon] NODE_10988_length_285_cov_11.359756:1-285 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 38, Coverage: 5, minDepth: 5 [pilon] Confirmed 141 of 285 bases (49.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10988_length_285_cov_11.359756:1-285 [pilon] Processing NODE_4257_length_687_cov_20.319788:1-687 [pilon] NODE_8423_length_398_cov_25.848375:1-398 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 155, Coverage: 14, minDepth: 5 [pilon] Confirmed 251 of 398 bases (63.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8423_length_398_cov_25.848375:1-398 [pilon] Processing NODE_9628_length_340_cov_33.351598:1-340 [pilon] NODE_12632_length_243_cov_27.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12632_length_243_cov_27.155738:1-243 [pilon] Processing NODE_10836_length_291_cov_12.176471:1-291 [pilon] NODE_13960_length_243_cov_14.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13960_length_243_cov_14.450820:1-243 [pilon] Processing NODE_217_length_2438_cov_25.635304:1-2438 [pilon] NODE_10971_length_285_cov_18.932927:1-285 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 78, Coverage: 4, minDepth: 5 [pilon] Confirmed 121 of 285 bases (42.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10971_length_285_cov_18.932927:1-285 [pilon] Processing NODE_13021_length_243_cov_22.713115:1-243 [pilon] NODE_9509_length_345_cov_21.821429:1-345 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 91, Coverage: 4, minDepth: 5 [pilon] Confirmed 132 of 345 bases (38.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9509_length_345_cov_21.821429:1-345 [pilon] Processing NODE_10848_length_290_cov_31.313609:1-290 [pilon] NODE_7358_length_450_cov_17.173252:1-450 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 128, Coverage: 18, minDepth: 5 [pilon] Confirmed 283 of 450 bases (62.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7358_length_450_cov_17.173252:1-450 [pilon] Processing NODE_8861_length_374_cov_11.090909:1-374 [pilon] NODE_111_length_2926_cov_2.028520:1-2926 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 171, Coverage: 7, minDepth: 5 [pilon] Confirmed 1781 of 2926 bases (60.87%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_111_length_2926_cov_2.028520:1-2926 [pilon] Processing NODE_3982_length_717_cov_1.760067:1-717 [pilon] NODE_7217_length_459_cov_15.695266:1-459 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 126, Coverage: 11, minDepth: 5 [pilon] Confirmed 289 of 459 bases (62.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7217_length_459_cov_15.695266:1-459 [pilon] Processing NODE_7993_length_419_cov_0.359060:1-419 [pilon] NODE_9306_length_354_cov_14.163090:1-354 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 74, Coverage: 10, minDepth: 5 [pilon] Confirmed 292 of 354 bases (82.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9306_length_354_cov_14.163090:1-354 [pilon] Processing NODE_939_length_1535_cov_22.969590:1-1535 [pilon] NODE_10511_length_304_cov_12.256831:1-304 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 35, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 304 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10511_length_304_cov_12.256831:1-304 [pilon] Processing NODE_7517_length_442_cov_24.218069:1-442 [pilon] NODE_3605_length_768_cov_2.775889:1-768 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 55, Coverage: 8, minDepth: 5 [pilon] Confirmed 521 of 768 bases (67.84%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3605_length_768_cov_2.775889:1-768 [pilon] Processing NODE_4293_length_682_cov_3.238859:1-682 [pilon] NODE_477_length_1939_cov_17.620462:1-1939 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 809, Coverage: 43, minDepth: 11 [pilon] Confirmed 1658 of 1939 bases (85.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_477_length_1939_cov_17.620462:1-1939 [pilon] Processing NODE_2000_length_1087_cov_1.853002:1-1087 [pilon] NODE_13508_length_243_cov_18.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13508_length_243_cov_18.311475:1-243 [pilon] Processing NODE_11016_length_283_cov_12.623457:1-283 [pilon] NODE_10407_length_308_cov_62.475936:1-308 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 270, Coverage: 38, minDepth: 10 [pilon] Confirmed 271 of 308 bases (87.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10407_length_308_cov_62.475936:1-308 [pilon] Processing NODE_3674_length_759_cov_1.362069:1-759 [pilon] NODE_3525_length_780_cov_13.978756:1-780 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 215, Coverage: 26, minDepth: 7 [pilon] Confirmed 630 of 780 bases (80.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3525_length_780_cov_13.978756:1-780 [pilon] Processing NODE_3296_length_815_cov_21.374640:1-815 [pilon] NODE_67_length_3334_cov_2.187675:1-3334 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 222, Coverage: 9, minDepth: 5 [pilon] Confirmed 2306 of 3334 bases (69.17%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_67_length_3334_cov_2.187675:1-3334 [pilon] Processing NODE_9753_length_336_cov_15.381395:1-336 [pilon] NODE_7134_length_463_cov_41.011696:1-463 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 289, Coverage: 61, minDepth: 15 [pilon] Confirmed 403 of 463 bases (87.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7134_length_463_cov_41.011696:1-463 [pilon] Processing NODE_114_length_2905_cov_23.203305:1-2905 [pilon] NODE_798_length_1627_cov_18.073705:1-1627 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 837, Coverage: 61, minDepth: 15 [pilon] Confirmed 1230 of 1627 bases (75.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_798_length_1627_cov_18.073705:1-1627 [pilon] Processing NODE_781_length_1635_cov_4.483487:1-1635 [pilon] NODE_293_length_2250_cov_27.383279:1-2250 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 1392, Coverage: 71, minDepth: 18 [pilon] Confirmed 2032 of 2250 bases (90.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_293_length_2250_cov_27.383279:1-2250 [pilon] Processing NODE_13614_length_243_cov_17.352459:1-243 [pilon] NODE_3795_length_741_cov_14.419355:1-741 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 226, Coverage: 29, minDepth: 7 [pilon] Confirmed 596 of 741 bases (80.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3795_length_741_cov_14.419355:1-741 [pilon] Processing NODE_4829_length_632_cov_7.109589:1-632 [pilon] NODE_8597_length_388_cov_29.352060:1-388 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 185, Coverage: 26, minDepth: 7 [pilon] Confirmed 364 of 388 bases (93.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8597_length_388_cov_29.352060:1-388 [pilon] Processing NODE_9343_length_352_cov_24.558442:1-352 [pilon] NODE_3569_length_774_cov_16.943338:1-774 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 246, Coverage: 32, minDepth: 8 [pilon] Confirmed 596 of 774 bases (77.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3569_length_774_cov_16.943338:1-774 [pilon] Processing NODE_6820_length_482_cov_1.556787:1-482 [pilon] NODE_10482_length_306_cov_7.491892:1-306 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10482_length_306_cov_7.491892:1-306 [pilon] Processing NODE_1276_length_1352_cov_1.359870:1-1352 [pilon] NODE_14195_length_243_cov_12.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14195_length_243_cov_12.663934:1-243 [pilon] Processing NODE_11715_length_255_cov_28.455224:1-255 [pilon] NODE_6309_length_517_cov_2.744949:1-517 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 26, Coverage: 7, minDepth: 5 [pilon] Confirmed 309 of 517 bases (59.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6309_length_517_cov_2.744949:1-517 [pilon] Processing NODE_7901_length_423_cov_2.043046:1-423 [pilon] NODE_10848_length_290_cov_31.313609:1-290 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 106, Coverage: 13, minDepth: 5 [pilon] Confirmed 215 of 290 bases (74.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10848_length_290_cov_31.313609:1-290 [pilon] Processing NODE_13102_length_243_cov_21.918033:1-243 [pilon] NODE_13021_length_243_cov_22.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13021_length_243_cov_22.713115:1-243 [pilon] Processing NODE_3657_length_761_cov_13.189063:1-761 [pilon] NODE_2940_length_884_cov_2.225426:1-884 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 50, Coverage: 7, minDepth: 5 [pilon] Confirmed 412 of 884 bases (46.61%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2940_length_884_cov_2.225426:1-884 [pilon] Processing NODE_1382_length_1304_cov_7.997464:1-1304 [pilon] NODE_9628_length_340_cov_33.351598:1-340 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 179, Coverage: 16, minDepth: 5 [pilon] Confirmed 243 of 340 bases (71.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9628_length_340_cov_33.351598:1-340 [pilon] Processing NODE_7883_length_423_cov_28.288079:1-423 [pilon] NODE_4293_length_682_cov_3.238859:1-682 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 49, Coverage: 9, minDepth: 5 [pilon] Confirmed 551 of 682 bases (80.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4293_length_682_cov_3.238859:1-682 [pilon] Processing NODE_12767_length_243_cov_25.385246:1-243 [pilon] NODE_3296_length_815_cov_21.374640:1-815 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 336, Coverage: 42, minDepth: 11 [pilon] Confirmed 694 of 815 bases (85.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3296_length_815_cov_21.374640:1-815 [pilon] Processing NODE_8780_length_378_cov_17.264591:1-378 [pilon] NODE_8861_length_374_cov_11.090909:1-374 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 62, Coverage: 3, minDepth: 5 [pilon] Confirmed 92 of 374 bases (24.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8861_length_374_cov_11.090909:1-374 [pilon] Processing NODE_9847_length_333_cov_6.174528:1-333 [pilon] NODE_4257_length_687_cov_20.319788:1-687 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 271, Coverage: 32, minDepth: 8 [pilon] Confirmed 490 of 687 bases (71.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4257_length_687_cov_20.319788:1-687 [pilon] Processing NODE_6561_length_499_cov_37.960317:1-499 [pilon] NODE_10836_length_291_cov_12.176471:1-291 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 46, Coverage: 4, minDepth: 5 [pilon] Confirmed 144 of 291 bases (49.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10836_length_291_cov_12.176471:1-291 [pilon] Processing NODE_14740_length_243_cov_8.221311:1-243 [pilon] NODE_3982_length_717_cov_1.760067:1-717 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 34, Coverage: 6, minDepth: 5 [pilon] Confirmed 452 of 717 bases (63.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3982_length_717_cov_1.760067:1-717 [pilon] Processing NODE_13652_length_243_cov_16.983607:1-243 [pilon] NODE_7993_length_419_cov_0.359060:1-419 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 419 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7993_length_419_cov_0.359060:1-419 [pilon] Processing NODE_11588_length_261_cov_13.000000:1-261 [pilon] NODE_114_length_2905_cov_23.203305:1-2905 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 1487, Coverage: 43, minDepth: 11 [pilon] Confirmed 2658 of 2905 bases (91.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_114_length_2905_cov_23.203305:1-2905 [pilon] Processing NODE_2967_length_880_cov_5.694335:1-880 [pilon] NODE_7517_length_442_cov_24.218069:1-442 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 188, Coverage: 25, minDepth: 6 [pilon] Confirmed 415 of 442 bases (93.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7517_length_442_cov_24.218069:1-442 [pilon] Processing NODE_11399_length_267_cov_19.589041:1-267 [pilon] NODE_217_length_2438_cov_25.635304:1-2438 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 1449, Coverage: 68, minDepth: 17 [pilon] Confirmed 2105 of 2438 bases (86.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_217_length_2438_cov_25.635304:1-2438 [pilon] Processing NODE_13864_length_243_cov_15.163934:1-243 [pilon] NODE_2000_length_1087_cov_1.853002:1-1087 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 717 of 1087 bases (65.96%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2000_length_1087_cov_1.853002:1-1087 [pilon] Processing NODE_5307_length_592_cov_3.216561:1-592 [pilon] NODE_939_length_1535_cov_22.969590:1-1535 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 742, Coverage: 42, minDepth: 11 [pilon] Confirmed 1304 of 1535 bases (84.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_939_length_1535_cov_22.969590:1-1535 [pilon] Processing NODE_12981_length_243_cov_23.147541:1-243 [pilon] NODE_11016_length_283_cov_12.623457:1-283 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 47, Coverage: 3, minDepth: 5 [pilon] Confirmed 90 of 283 bases (31.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_9753_length_336_cov_15.381395:1-336 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 42, Coverage: 3, minDepth: 5 [pilon] Confirmed 128 of 336 bases (38.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9753_length_336_cov_15.381395:1-336 [pilon] Finished processing NODE_11016_length_283_cov_12.623457:1-283 [pilon] Processing NODE_7944_length_420_cov_22.508361:1-420 [pilon] Processing NODE_563_length_1846_cov_1.961159:1-1846 [pilon] NODE_3674_length_759_cov_1.362069:1-759 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 24, Coverage: 4, minDepth: 5 [pilon] Confirmed 212 of 759 bases (27.93%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3674_length_759_cov_1.362069:1-759 [pilon] Processing NODE_9661_length_339_cov_17.256881:1-339 [pilon] NODE_781_length_1635_cov_4.483487:1-1635 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 169, Coverage: 10, minDepth: 5 [pilon] Confirmed 1304 of 1635 bases (79.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_781_length_1635_cov_4.483487:1-1635 [pilon] Processing NODE_6375_length_512_cov_4.040921:1-512 [pilon] NODE_13614_length_243_cov_17.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13614_length_243_cov_17.352459:1-243 [pilon] Processing NODE_12735_length_243_cov_25.786885:1-243 [pilon] NODE_13102_length_243_cov_21.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13102_length_243_cov_21.918033:1-243 [pilon] Processing NODE_13093_length_243_cov_22.032787:1-243 [pilon] NODE_11715_length_255_cov_28.455224:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 87, Coverage: 4, minDepth: 5 [pilon] Confirmed 83 of 255 bases (32.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11715_length_255_cov_28.455224:1-255 [pilon] Processing NODE_3295_length_815_cov_22.504323:1-815 [pilon] NODE_4829_length_632_cov_7.109589:1-632 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 92, Coverage: 16, minDepth: 5 [pilon] Confirmed 615 of 632 bases (97.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4829_length_632_cov_7.109589:1-632 [pilon] Processing NODE_1974_length_1093_cov_10.812757:1-1093 [pilon] NODE_3657_length_761_cov_13.189063:1-761 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 189, Coverage: 17, minDepth: 5 [pilon] Confirmed 641 of 761 bases (84.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3657_length_761_cov_13.189063:1-761 [pilon] Processing NODE_11669_length_258_cov_9.445255:1-258 [pilon] NODE_9343_length_352_cov_24.558442:1-352 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 127, Coverage: 17, minDepth: 5 [pilon] Confirmed 275 of 352 bases (78.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9343_length_352_cov_24.558442:1-352 [pilon] Processing NODE_10645_length_300_cov_12.614525:1-300 [pilon] NODE_1276_length_1352_cov_1.359870:1-1352 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 56, Coverage: 5, minDepth: 5 [pilon] Confirmed 648 of 1352 bases (47.93%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1276_length_1352_cov_1.359870:1-1352 [pilon] Processing NODE_8009_length_418_cov_1.013468:1-418 [pilon] NODE_12767_length_243_cov_25.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12767_length_243_cov_25.385246:1-243 [pilon] Processing NODE_717_length_1690_cov_15.511791:1-1690 [pilon] NODE_7901_length_423_cov_2.043046:1-423 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 23, Coverage: 7, minDepth: 5 [pilon] Confirmed 328 of 423 bases (77.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7901_length_423_cov_2.043046:1-423 [pilon] Processing NODE_7312_length_453_cov_1.036145:1-453 [pilon] NODE_6820_length_482_cov_1.556787:1-482 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 206 of 482 bases (42.74%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6820_length_482_cov_1.556787:1-482 [pilon] Processing NODE_8043_length_416_cov_2.616949:1-416 [pilon] NODE_8780_length_378_cov_17.264591:1-378 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 122, Coverage: 13, minDepth: 5 [pilon] Confirmed 325 of 378 bases (85.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8780_length_378_cov_17.264591:1-378 [pilon] Processing NODE_318_length_2202_cov_2.386353:1-2202 [pilon] NODE_1382_length_1304_cov_7.997464:1-1304 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 253, Coverage: 15, minDepth: 5 [pilon] Confirmed 902 of 1304 bases (69.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1382_length_1304_cov_7.997464:1-1304 [pilon] Processing NODE_8623_length_387_cov_17.274436:1-387 [pilon] NODE_2967_length_880_cov_5.694335:1-880 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 120, Coverage: 12, minDepth: 5 [pilon] Confirmed 706 of 880 bases (80.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2967_length_880_cov_5.694335:1-880 [pilon] Processing NODE_1063_length_1459_cov_9.576981:1-1459 [pilon] NODE_7883_length_423_cov_28.288079:1-423 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 185, Coverage: 44, minDepth: 11 [pilon] Confirmed 375 of 423 bases (88.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7883_length_423_cov_28.288079:1-423 [pilon] Processing NODE_8600_length_388_cov_18.943820:1-388 [pilon] NODE_9847_length_333_cov_6.174528:1-333 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 30, Coverage: 7, minDepth: 5 [pilon] Confirmed 255 of 333 bases (76.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9847_length_333_cov_6.174528:1-333 [pilon] Processing NODE_10772_length_294_cov_20.630058:1-294 [pilon] NODE_13652_length_243_cov_16.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13652_length_243_cov_16.983607:1-243 [pilon] Processing NODE_5363_length_587_cov_17.706009:1-587 [pilon] NODE_11588_length_261_cov_13.000000:1-261 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 35, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 261 bases (49.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11588_length_261_cov_13.000000:1-261 [pilon] Processing NODE_10994_length_285_cov_7.182927:1-285 [pilon] NODE_14740_length_243_cov_8.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14740_length_243_cov_8.221311:1-243 [pilon] Processing NODE_8000_length_418_cov_14.303030:1-418 [pilon] NODE_6561_length_499_cov_37.960317:1-499 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 347, Coverage: 40, minDepth: 10 [pilon] Confirmed 343 of 499 bases (68.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6561_length_499_cov_37.960317:1-499 [pilon] Processing NODE_11171_length_276_cov_29.961290:1-276 [pilon] NODE_13093_length_243_cov_22.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13093_length_243_cov_22.032787:1-243 [pilon] Processing NODE_12322_length_243_cov_32.672131:1-243 [pilon] NODE_11399_length_267_cov_19.589041:1-267 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 58, Coverage: 8, minDepth: 5 [pilon] Confirmed 194 of 267 bases (72.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11399_length_267_cov_19.589041:1-267 [pilon] Processing NODE_12922_length_243_cov_23.836066:1-243 [pilon] NODE_11669_length_258_cov_9.445255:1-258 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11669_length_258_cov_9.445255:1-258 [pilon] Processing NODE_14817_length_243_cov_7.508197:1-243 [pilon] NODE_13864_length_243_cov_15.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13864_length_243_cov_15.163934:1-243 [pilon] Processing NODE_5820_length_554_cov_4.011547:1-554 [pilon] NODE_5307_length_592_cov_3.216561:1-592 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 51, Coverage: 10, minDepth: 5 [pilon] Confirmed 503 of 592 bases (84.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5307_length_592_cov_3.216561:1-592 [pilon] Processing NODE_3138_length_844_cov_4.540802:1-844 [pilon] NODE_12981_length_243_cov_23.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12981_length_243_cov_23.147541:1-243 [pilon] Processing NODE_168_length_2632_cov_29.219833:1-2632 [pilon] NODE_8009_length_418_cov_1.013468:1-418 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 44 of 418 bases (10.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8009_length_418_cov_1.013468:1-418 [pilon] Processing NODE_5538_length_574_cov_60.470199:1-574 [pilon] NODE_9661_length_339_cov_17.256881:1-339 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 83, Coverage: 9, minDepth: 5 [pilon] Confirmed 216 of 339 bases (63.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9661_length_339_cov_17.256881:1-339 [pilon] Processing NODE_7411_length_447_cov_27.211656:1-447 [pilon] NODE_7944_length_420_cov_22.508361:1-420 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 160, Coverage: 23, minDepth: 6 [pilon] Confirmed 302 of 420 bases (71.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7944_length_420_cov_22.508361:1-420 [pilon] Processing NODE_3441_length_793_cov_2.409226:1-793 [pilon] NODE_563_length_1846_cov_1.961159:1-1846 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 99, Coverage: 7, minDepth: 5 [pilon] Confirmed 1216 of 1846 bases (65.87%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_563_length_1846_cov_1.961159:1-1846 [pilon] Processing NODE_3832_length_736_cov_29.891057:1-736 [pilon] NODE_717_length_1690_cov_15.511791:1-1690 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 598, Coverage: 37, minDepth: 9 [pilon] Confirmed 1257 of 1690 bases (74.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_717_length_1690_cov_15.511791:1-1690 [pilon] Processing NODE_13947_length_243_cov_14.532787:1-243 [pilon] NODE_12735_length_243_cov_25.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12735_length_243_cov_25.786885:1-243 [pilon] Processing NODE_13733_length_243_cov_16.155738:1-243 [pilon] NODE_6375_length_512_cov_4.040921:1-512 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 33, Coverage: 8, minDepth: 5 [pilon] Confirmed 376 of 512 bases (73.44%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6375_length_512_cov_4.040921:1-512 [pilon] Processing NODE_13139_length_243_cov_21.622951:1-243 [pilon] NODE_10645_length_300_cov_12.614525:1-300 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10645_length_300_cov_12.614525:1-300 [pilon] Processing NODE_11711_length_255_cov_29.350746:1-255 [pilon] NODE_3295_length_815_cov_22.504323:1-815 log: [pilon] NODE_1974_length_1093_cov_10.812757:1-1093 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 259, Coverage: 21, minDepth: 5 [pilon] Confirmed 969 of 1093 bases (88.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1974_length_1093_cov_10.812757:1-1093 [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 358, Coverage: 45, minDepth: 11 [pilon] Confirmed 656 of 815 bases (80.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3295_length_815_cov_22.504323:1-815 [pilon] Processing NODE_10177_length_318_cov_15.903553:1-318 [pilon] Processing NODE_4551_length_657_cov_12.087687:1-657 [pilon] NODE_1063_length_1459_cov_9.576981:1-1459 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 356, Coverage: 19, minDepth: 5 [pilon] Confirmed 1254 of 1459 bases (85.95%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1063_length_1459_cov_9.576981:1-1459 [pilon] Processing NODE_10148_length_319_cov_32.232323:1-319 [pilon] NODE_8043_length_416_cov_2.616949:1-416 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 22, Coverage: 7, minDepth: 5 [pilon] Confirmed 315 of 416 bases (75.72%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8043_length_416_cov_2.616949:1-416 [pilon] Processing NODE_10182_length_318_cov_14.309645:1-318 [pilon] NODE_318_length_2202_cov_2.386353:1-2202 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 146, Coverage: 9, minDepth: 5 [pilon] Confirmed 1735 of 2202 bases (78.79%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_318_length_2202_cov_2.386353:1-2202 [pilon] Processing NODE_11751_length_255_cov_17.253731:1-255 [pilon] NODE_7312_length_453_cov_1.036145:1-453 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 12 of 453 bases (2.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7312_length_453_cov_1.036145:1-453 [pilon] Processing NODE_4989_length_619_cov_20.146586:1-619 [pilon] NODE_11171_length_276_cov_29.961290:1-276 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 104, Coverage: 7, minDepth: 5 [pilon] Confirmed 179 of 276 bases (64.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11171_length_276_cov_29.961290:1-276 [pilon] Processing NODE_11236_length_274_cov_9.849673:1-274 [pilon] NODE_8623_length_387_cov_17.274436:1-387 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 104, Coverage: 10, minDepth: 5 [pilon] Confirmed 298 of 387 bases (77.00%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8623_length_387_cov_17.274436:1-387 [pilon] Processing NODE_7620_length_436_cov_27.628571:1-436 [pilon] NODE_8600_length_388_cov_18.943820:1-388 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 94, Coverage: 13, minDepth: 5 [pilon] Confirmed 274 of 388 bases (70.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8600_length_388_cov_18.943820:1-388 [pilon] Processing NODE_7339_length_451_cov_20.445455:1-451 [pilon] NODE_10772_length_294_cov_20.630058:1-294 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 60, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 294 bases (44.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10772_length_294_cov_20.630058:1-294 [pilon] Processing NODE_11159_length_277_cov_13.583333:1-277 [pilon] NODE_10994_length_285_cov_7.182927:1-285 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10994_length_285_cov_7.182927:1-285 [pilon] Processing NODE_5612_length_569_cov_49.330357:1-569 [pilon] NODE_8000_length_418_cov_14.303030:1-418 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 95, Coverage: 18, minDepth: 5 [pilon] Confirmed 346 of 418 bases (82.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8000_length_418_cov_14.303030:1-418 [pilon] Processing NODE_10823_length_291_cov_25.905882:1-291 [pilon] NODE_5363_length_587_cov_17.706009:1-587 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 239, Coverage: 32, minDepth: 8 [pilon] Confirmed 431 of 587 bases (73.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5363_length_587_cov_17.706009:1-587 [pilon] Processing NODE_6951_length_474_cov_16.875354:1-474 [pilon] NODE_14817_length_243_cov_7.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14817_length_243_cov_7.508197:1-243 [pilon] Processing NODE_1650_length_1200_cov_17.691381:1-1200 [pilon] NODE_5538_length_574_cov_60.470199:1-574 log: [pilon] frags shovill.bam: coverage 107 [pilon] Total Reads: 647, Coverage: 107, minDepth: 27 [pilon] Confirmed 500 of 574 bases (87.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5538_length_574_cov_60.470199:1-574 [pilon] Processing NODE_12588_length_243_cov_27.672131:1-243 [pilon] NODE_12322_length_243_cov_32.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_12922_length_243_cov_23.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12922_length_243_cov_23.836066:1-243 [pilon] Finished processing NODE_12322_length_243_cov_32.672131:1-243 [pilon] Processing NODE_11758_length_255_cov_14.059701:1-255 [pilon] Processing NODE_2387_length_992_cov_59.874856:1-992 [pilon] NODE_5820_length_554_cov_4.011547:1-554 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 50, Coverage: 11, minDepth: 5 [pilon] Confirmed 473 of 554 bases (85.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5820_length_554_cov_4.011547:1-554 [pilon] Processing NODE_14100_length_243_cov_13.467213:1-243 [pilon] NODE_3138_length_844_cov_4.540802:1-844 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 82, Coverage: 13, minDepth: 5 [pilon] Confirmed 501 of 844 bases (59.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3138_length_844_cov_4.540802:1-844 [pilon] Processing NODE_3255_length_823_cov_3.160969:1-823 [pilon] NODE_10148_length_319_cov_32.232323:1-319 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 146, Coverage: 17, minDepth: 5 [pilon] Confirmed 265 of 319 bases (83.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10148_length_319_cov_32.232323:1-319 [pilon] Processing NODE_14772_length_243_cov_7.967213:1-243 [pilon] NODE_3441_length_793_cov_2.409226:1-793 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 49, Coverage: 8, minDepth: 5 [pilon] Confirmed 591 of 793 bases (74.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3441_length_793_cov_2.409226:1-793 [pilon] Processing NODE_7068_length_467_cov_3.826590:1-467 [pilon] NODE_7411_length_447_cov_27.211656:1-447 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 193, Coverage: 24, minDepth: 6 [pilon] Confirmed 311 of 447 bases (69.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7411_length_447_cov_27.211656:1-447 [pilon] Processing NODE_8389_length_400_cov_25.315412:1-400 [pilon] NODE_13733_length_243_cov_16.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13733_length_243_cov_16.155738:1-243 [pilon] Processing NODE_14580_length_243_cov_9.598361:1-243 [pilon] NODE_168_length_2632_cov_29.219833:1-2632 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1689, Coverage: 54, minDepth: 14 [pilon] Confirmed 2334 of 2632 bases (88.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_168_length_2632_cov_29.219833:1-2632 [pilon] Processing NODE_12787_length_243_cov_25.139344:1-243 [pilon] NODE_11711_length_255_cov_29.350746:1-255 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 76, Coverage: 6, minDepth: 5 [pilon] Confirmed 218 of 255 bases (85.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11711_length_255_cov_29.350746:1-255 [pilon] Processing NODE_595_length_1816_cov_39.231268:1-1816 [pilon] NODE_13947_length_243_cov_14.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13947_length_243_cov_14.532787:1-243 [pilon] Processing NODE_6232_length_522_cov_18.827930:1-522 [pilon] NODE_13139_length_243_cov_21.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13139_length_243_cov_21.622951:1-243 [pilon] Processing NODE_9012_length_366_cov_11.530612:1-366 [pilon] NODE_10177_length_318_cov_15.903553:1-318 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 54, Coverage: 4, minDepth: 5 [pilon] Confirmed 134 of 318 bases (42.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10177_length_318_cov_15.903553:1-318 [pilon] Processing NODE_7612_length_437_cov_6.905063:1-437 [pilon] NODE_3832_length_736_cov_29.891057:1-736 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 423, Coverage: 43, minDepth: 11 [pilon] Confirmed 567 of 736 bases (77.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3832_length_736_cov_29.891057:1-736 [pilon] Processing NODE_7425_length_447_cov_2.917178:1-447 [pilon] NODE_4551_length_657_cov_12.087687:1-657 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 149, Coverage: 13, minDepth: 5 [pilon] Confirmed 437 of 657 bases (66.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4551_length_657_cov_12.087687:1-657 [pilon] Processing NODE_11213_length_276_cov_6.612903:1-276 [pilon] NODE_11236_length_274_cov_9.849673:1-274 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 38, Coverage: 4, minDepth: 5 [pilon] Confirmed 106 of 274 bases (38.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11236_length_274_cov_9.849673:1-274 [pilon] Processing NODE_7329_length_452_cov_1.350453:1-452 [pilon] NODE_11751_length_255_cov_17.253731:1-255 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 46, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11751_length_255_cov_17.253731:1-255 [pilon] Processing NODE_13805_length_243_cov_15.622951:1-243 [pilon] NODE_10182_length_318_cov_14.309645:1-318 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 166 of 318 bases (52.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10182_length_318_cov_14.309645:1-318 [pilon] Processing NODE_9095_length_362_cov_5.979253:1-362 [pilon] NODE_4989_length_619_cov_20.146586:1-619 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 236, Coverage: 36, minDepth: 9 [pilon] Confirmed 460 of 619 bases (74.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4989_length_619_cov_20.146586:1-619 [pilon] Processing NODE_12987_length_243_cov_23.081967:1-243 [pilon] NODE_10823_length_291_cov_25.905882:1-291 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 85, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 291 bases (44.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10823_length_291_cov_25.905882:1-291 [pilon] Processing NODE_13632_length_243_cov_17.196721:1-243 [pilon] NODE_7620_length_436_cov_27.628571:1-436 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 166, Coverage: 22, minDepth: 6 [pilon] Confirmed 290 of 436 bases (66.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7620_length_436_cov_27.628571:1-436 [pilon] Processing NODE_11307_length_271_cov_19.293333:1-271 [pilon] NODE_7339_length_451_cov_20.445455:1-451 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 139, Coverage: 8, minDepth: 5 [pilon] Confirmed 243 of 451 bases (53.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7339_length_451_cov_20.445455:1-451 [pilon] Processing NODE_441_length_1978_cov_17.020463:1-1978 [pilon] NODE_11159_length_277_cov_13.583333:1-277 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 44, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 277 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11159_length_277_cov_13.583333:1-277 [pilon] Processing NODE_664_length_1733_cov_36.583747:1-1733 [pilon] NODE_5612_length_569_cov_49.330357:1-569 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 518, Coverage: 75, minDepth: 19 [pilon] Confirmed 496 of 569 bases (87.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5612_length_569_cov_49.330357:1-569 [pilon] Processing NODE_2332_length_1004_cov_12.698754:1-1004 [pilon] NODE_11758_length_255_cov_14.059701:1-255 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 41, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11758_length_255_cov_14.059701:1-255 [pilon] Processing NODE_14153_length_243_cov_13.098361:1-243 [pilon] NODE_14580_length_243_cov_9.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14580_length_243_cov_9.598361:1-243 [pilon] Processing NODE_4412_length_670_cov_20.344262:1-670 [pilon] NODE_6951_length_474_cov_16.875354:1-474 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 122, Coverage: 21, minDepth: 5 [pilon] Confirmed 311 of 474 bases (65.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6951_length_474_cov_16.875354:1-474 [pilon] Processing NODE_9630_length_340_cov_27.561644:1-340 [pilon] NODE_14772_length_243_cov_7.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14772_length_243_cov_7.967213:1-243 [pilon] Processing NODE_7715_length_432_cov_10.633441:1-432 [pilon] NODE_7068_length_467_cov_3.826590:1-467 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 34, Coverage: 9, minDepth: 5 [pilon] Confirmed 344 of 467 bases (73.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7068_length_467_cov_3.826590:1-467 [pilon] Processing NODE_9065_length_363_cov_21.991736:1-363 [pilon] NODE_1650_length_1200_cov_17.691381:1-1200 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 493, Coverage: 39, minDepth: 10 [pilon] Confirmed 1045 of 1200 bases (87.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1650_length_1200_cov_17.691381:1-1200 [pilon] Processing NODE_11966_length_246_cov_34.912000:1-246 [pilon] NODE_14100_length_243_cov_13.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14100_length_243_cov_13.467213:1-243 [pilon] Processing NODE_235_length_2397_cov_21.743849:1-2397 [pilon] NODE_3255_length_823_cov_3.160969:1-823 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 58, Coverage: 9, minDepth: 5 [pilon] Confirmed 572 of 823 bases (69.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3255_length_823_cov_3.160969:1-823 [pilon] Processing NODE_6866_length_480_cov_6.540390:1-480 [pilon] NODE_2387_length_992_cov_59.874856:1-992 log: [pilon] frags shovill.bam: coverage 134 [pilon] Total Reads: 1173, Coverage: 134, minDepth: 34 [pilon] Confirmed 841 of 992 bases (84.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2387_length_992_cov_59.874856:1-992 [pilon] Processing NODE_1980_length_1092_cov_13.511843:1-1092 [pilon] NODE_6232_length_522_cov_18.827930:1-522 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 169, Coverage: 25, minDepth: 6 [pilon] Confirmed 424 of 522 bases (81.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6232_length_522_cov_18.827930:1-522 [pilon] Processing NODE_7247_length_457_cov_17.300595:1-457 [pilon] NODE_8389_length_400_cov_25.315412:1-400 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 169, Coverage: 19, minDepth: 5 [pilon] Confirmed 258 of 400 bases (64.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8389_length_400_cov_25.315412:1-400 [pilon] Processing NODE_7405_length_448_cov_0.984709:1-448 [pilon] NODE_12787_length_243_cov_25.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12787_length_243_cov_25.139344:1-243 [pilon] Processing NODE_14888_length_243_cov_6.803279:1-243 [pilon] NODE_9012_length_366_cov_11.530612:1-366 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 61, Coverage: 10, minDepth: 5 [pilon] Confirmed 296 of 366 bases (80.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9012_length_366_cov_11.530612:1-366 [pilon] Processing NODE_1247_length_1367_cov_25.476726:1-1367 [pilon] NODE_9095_length_362_cov_5.979253:1-362 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 362 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9095_length_362_cov_5.979253:1-362 [pilon] Processing NODE_6729_length_489_cov_0.869565:1-489 [pilon] NODE_12588_length_243_cov_27.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12588_length_243_cov_27.672131:1-243 [pilon] Processing NODE_2505_length_966_cov_31.447337:1-966 [pilon] NODE_11213_length_276_cov_6.612903:1-276 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11213_length_276_cov_6.612903:1-276 [pilon] Processing NODE_10845_length_291_cov_6.000000:1-291 [pilon] NODE_7329_length_452_cov_1.350453:1-452 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 17, Coverage: 5, minDepth: 5 [pilon] Confirmed 239 of 452 bases (52.88%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7329_length_452_cov_1.350453:1-452 [pilon] Processing NODE_6086_length_533_cov_4.932039:1-533 [pilon] NODE_7612_length_437_cov_6.905063:1-437 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 55, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 437 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7612_length_437_cov_6.905063:1-437 [pilon] Processing NODE_5154_length_606_cov_1.389691:1-606 [pilon] NODE_595_length_1816_cov_39.231268:1-1816 log: [pilon] frags shovill.bam: coverage 108 [pilon] Total Reads: 1650, Coverage: 108, minDepth: 27 [pilon] Confirmed 1694 of 1816 bases (93.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_595_length_1816_cov_39.231268:1-1816 [pilon] Processing NODE_8625_length_387_cov_16.191729:1-387 [pilon] NODE_13805_length_243_cov_15.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13805_length_243_cov_15.622951:1-243 [pilon] Processing NODE_5502_length_577_cov_3.054825:1-577 [pilon] NODE_7425_length_447_cov_2.917178:1-447 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 26, Coverage: 8, minDepth: 5 [pilon] Confirmed 309 of 447 bases (69.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7425_length_447_cov_2.917178:1-447 [pilon] Processing NODE_3340_length_807_cov_13.412536:1-807 [pilon] NODE_441_length_1978_cov_17.020463:1-1978 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 796, Coverage: 47, minDepth: 12 [pilon] Confirmed 1415 of 1978 bases (71.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_441_length_1978_cov_17.020463:1-1978 [pilon] Processing NODE_3260_length_822_cov_18.763195:1-822 [pilon] NODE_13632_length_243_cov_17.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13632_length_243_cov_17.196721:1-243 [pilon] Processing NODE_8153_length_411_cov_6.765517:1-411 [pilon] NODE_12987_length_243_cov_23.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12987_length_243_cov_23.081967:1-243 [pilon] Processing NODE_8789_length_378_cov_11.957198:1-378 [pilon] NODE_11307_length_271_cov_19.293333:1-271 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 71, Coverage: 12, minDepth: 5 [pilon] Confirmed 228 of 271 bases (84.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_4412_length_670_cov_20.344262:1-670 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 279, Coverage: 31, minDepth: 8 [pilon] Confirmed 517 of 670 bases (77.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4412_length_670_cov_20.344262:1-670 [pilon] Finished processing NODE_11307_length_271_cov_19.293333:1-271 [pilon] Processing NODE_10533_length_303_cov_21.989011:1-303 [pilon] Processing NODE_1179_length_1407_cov_14.640747:1-1407 [pilon] NODE_14153_length_243_cov_13.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14153_length_243_cov_13.098361:1-243 [pilon] Processing NODE_1333_length_1328_cov_0.954432:1-1328 [pilon] NODE_2332_length_1004_cov_12.698754:1-1004 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 302, Coverage: 34, minDepth: 9 [pilon] Confirmed 806 of 1004 bases (80.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2332_length_1004_cov_12.698754:1-1004 [pilon] Processing NODE_6515_length_502_cov_30.459318:1-502 [pilon] NODE_6729_length_489_cov_0.869565:1-489 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 84 of 489 bases (17.18%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6729_length_489_cov_0.869565:1-489 [pilon] Processing NODE_4379_length_673_cov_16.353261:1-673 [pilon] NODE_9065_length_363_cov_21.991736:1-363 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 122, Coverage: 3, minDepth: 5 [pilon] Confirmed 128 of 363 bases (35.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9065_length_363_cov_21.991736:1-363 [pilon] Processing NODE_6047_length_536_cov_9.286747:1-536 [pilon] NODE_664_length_1733_cov_36.583747:1-1733 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 1428, Coverage: 75, minDepth: 19 [pilon] Confirmed 1407 of 1733 bases (81.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_664_length_1733_cov_36.583747:1-1733 [pilon] Processing NODE_4125_length_702_cov_17.585198:1-702 [pilon] NODE_11966_length_246_cov_34.912000:1-246 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 99, Coverage: 9, minDepth: 5 [pilon] Confirmed 190 of 246 bases (77.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11966_length_246_cov_34.912000:1-246 [pilon] Processing NODE_3415_length_796_cov_35.733333:1-796 [pilon] NODE_7715_length_432_cov_10.633441:1-432 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 81, Coverage: 15, minDepth: 5 [pilon] Confirmed 343 of 432 bases (79.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7715_length_432_cov_10.633441:1-432 [pilon] Processing NODE_9988_length_326_cov_20.614634:1-326 [pilon] NODE_7247_length_457_cov_17.300595:1-457 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 128, Coverage: 24, minDepth: 6 [pilon] Confirmed 402 of 457 bases (87.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7247_length_457_cov_17.300595:1-457 [pilon] Processing NODE_215_length_2458_cov_9.344031:1-2458 [pilon] NODE_9630_length_340_cov_27.561644:1-340 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 131, Coverage: 15, minDepth: 5 [pilon] Confirmed 226 of 340 bases (66.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9630_length_340_cov_27.561644:1-340 [pilon] Processing NODE_5621_length_569_cov_2.104911:1-569 [pilon] NODE_3260_length_822_cov_18.763195:1-822 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 300, Coverage: 25, minDepth: 6 [pilon] Confirmed 626 of 822 bases (76.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3260_length_822_cov_18.763195:1-822 [pilon] Processing NODE_14526_length_243_cov_10.065574:1-243 [pilon] NODE_1980_length_1092_cov_13.511843:1-1092 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 328, Coverage: 31, minDepth: 8 [pilon] Confirmed 701 of 1092 bases (64.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1980_length_1092_cov_13.511843:1-1092 [pilon] Processing NODE_7177_length_461_cov_2.770588:1-461 [pilon] NODE_6086_length_533_cov_4.932039:1-533 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 54, Coverage: 12, minDepth: 5 [pilon] Confirmed 388 of 533 bases (72.80%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6086_length_533_cov_4.932039:1-533 [pilon] Processing NODE_2307_length_1009_cov_7.118243:1-1009 [pilon] NODE_14888_length_243_cov_6.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14888_length_243_cov_6.803279:1-243 [pilon] Processing NODE_7251_length_457_cov_12.270833:1-457 [pilon] NODE_10845_length_291_cov_6.000000:1-291 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 25, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 291 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10845_length_291_cov_6.000000:1-291 [pilon] Processing NODE_11554_length_261_cov_38.642857:1-261 [pilon] NODE_6866_length_480_cov_6.540390:1-480 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 65, Coverage: 7, minDepth: 5 [pilon] Confirmed 250 of 480 bases (52.08%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6866_length_480_cov_6.540390:1-480 [pilon] Processing NODE_11632_length_258_cov_22.145985:1-258 [pilon] NODE_7405_length_448_cov_0.984709:1-448 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 448 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7405_length_448_cov_0.984709:1-448 [pilon] Processing NODE_2514_length_964_cov_23.881376:1-964 [pilon] NODE_235_length_2397_cov_21.743849:1-2397 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 1223, Coverage: 43, minDepth: 11 [pilon] Confirmed 1882 of 2397 bases (78.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_235_length_2397_cov_21.743849:1-2397 [pilon] Processing NODE_9699_length_338_cov_30.857143:1-338 [pilon] NODE_1247_length_1367_cov_25.476726:1-1367 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 809, Coverage: 61, minDepth: 15 [pilon] Confirmed 1283 of 1367 bases (93.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1247_length_1367_cov_25.476726:1-1367 [pilon] Processing NODE_5886_length_549_cov_8.317757:1-549 [pilon] NODE_2505_length_966_cov_31.447337:1-966 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 609, Coverage: 58, minDepth: 15 [pilon] Confirmed 880 of 966 bases (91.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2505_length_966_cov_31.447337:1-966 [pilon] Processing NODE_1164_length_1412_cov_2.082107:1-1412 [pilon] NODE_5154_length_606_cov_1.389691:1-606 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 363 of 606 bases (59.90%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5154_length_606_cov_1.389691:1-606 [pilon] Processing NODE_1370_length_1310_cov_22.300252:1-1310 [pilon] NODE_10533_length_303_cov_21.989011:1-303 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 60, Coverage: 5, minDepth: 5 [pilon] Confirmed 179 of 303 bases (59.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10533_length_303_cov_21.989011:1-303 [pilon] Processing NODE_12273_length_243_cov_33.975410:1-243 [pilon] NODE_8625_length_387_cov_16.191729:1-387 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 105, Coverage: 15, minDepth: 5 [pilon] Confirmed 289 of 387 bases (74.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8625_length_387_cov_16.191729:1-387 [pilon] Processing NODE_14722_length_243_cov_8.401639:1-243 [pilon] NODE_3340_length_807_cov_13.412536:1-807 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 206, Coverage: 24, minDepth: 6 [pilon] Confirmed 682 of 807 bases (84.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3340_length_807_cov_13.412536:1-807 [pilon] Processing NODE_11285_length_273_cov_9.078947:1-273 [pilon] NODE_1179_length_1407_cov_14.640747:1-1407 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 481, Coverage: 30, minDepth: 8 [pilon] Confirmed 1198 of 1407 bases (85.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1179_length_1407_cov_14.640747:1-1407 [pilon] Processing NODE_6797_length_483_cov_18.052486:1-483 [pilon] NODE_5502_length_577_cov_3.054825:1-577 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 36, Coverage: 8, minDepth: 5 [pilon] Confirmed 368 of 577 bases (63.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5502_length_577_cov_3.054825:1-577 [pilon] Processing NODE_593_length_1819_cov_5.106007:1-1819 [pilon] NODE_8153_length_411_cov_6.765517:1-411 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 50, Coverage: 6, minDepth: 5 [pilon] Confirmed 217 of 411 bases (52.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8153_length_411_cov_6.765517:1-411 [pilon] Processing NODE_9441_length_348_cov_20.841410:1-348 [pilon] NODE_8789_length_378_cov_11.957198:1-378 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 70, Coverage: 9, minDepth: 5 [pilon] Confirmed 183 of 378 bases (48.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8789_length_378_cov_11.957198:1-378 [pilon] Processing NODE_9310_length_354_cov_11.785408:1-354 [pilon] NODE_4379_length_673_cov_16.353261:1-673 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 224, Coverage: 35, minDepth: 9 [pilon] Confirmed 465 of 673 bases (69.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4379_length_673_cov_16.353261:1-673 [pilon] Processing NODE_12890_length_243_cov_24.155738:1-243 [pilon] NODE_1333_length_1328_cov_0.954432:1-1328 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 46, Coverage: 5, minDepth: 5 [pilon] Confirmed 570 of 1328 bases (42.92%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1333_length_1328_cov_0.954432:1-1328 [pilon] Processing NODE_9542_length_345_cov_5.888393:1-345 [pilon] NODE_5621_length_569_cov_2.104911:1-569 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 217 of 569 bases (38.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5621_length_569_cov_2.104911:1-569 [pilon] Processing NODE_10948_length_285_cov_36.798780:1-285 [pilon] NODE_6515_length_502_cov_30.459318:1-502 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 248, Coverage: 30, minDepth: 8 [pilon] Confirmed 396 of 502 bases (78.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6515_length_502_cov_30.459318:1-502 [pilon] Processing NODE_2909_length_891_cov_2.083117:1-891 [pilon] NODE_5886_length_549_cov_8.317757:1-549 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 84, Coverage: 11, minDepth: 5 [pilon] Confirmed 371 of 549 bases (67.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5886_length_549_cov_8.317757:1-549 [pilon] Processing NODE_10804_length_293_cov_10.191860:1-293 [pilon] NODE_6047_length_536_cov_9.286747:1-536 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 105, Coverage: 18, minDepth: 5 [pilon] Confirmed 403 of 536 bases (75.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6047_length_536_cov_9.286747:1-536 [pilon] Processing NODE_2702_length_929_cov_1.750000:1-929 [pilon] NODE_4125_length_702_cov_17.585198:1-702 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 225, Coverage: 30, minDepth: 8 [pilon] Confirmed 655 of 702 bases (93.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4125_length_702_cov_17.585198:1-702 [pilon] Processing NODE_13925_length_243_cov_14.713115:1-243 [pilon] NODE_12273_length_243_cov_33.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 75, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12273_length_243_cov_33.975410:1-243 [pilon] Processing NODE_11586_length_261_cov_13.785714:1-261 [pilon] NODE_6797_length_483_cov_18.052486:1-483 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 153, Coverage: 14, minDepth: 5 [pilon] Confirmed 356 of 483 bases (73.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6797_length_483_cov_18.052486:1-483 [pilon] Processing NODE_13048_length_243_cov_22.442623:1-243 [pilon] NODE_2307_length_1009_cov_7.118243:1-1009 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 179, Coverage: 13, minDepth: 5 [pilon] Confirmed 801 of 1009 bases (79.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2307_length_1009_cov_7.118243:1-1009 [pilon] Processing NODE_14699_length_243_cov_8.573770:1-243 [pilon] NODE_14526_length_243_cov_10.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14526_length_243_cov_10.065574:1-243 [pilon] Processing NODE_11406_length_267_cov_16.986301:1-267 [pilon] NODE_9988_length_326_cov_20.614634:1-326 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 76, Coverage: 7, minDepth: 5 [pilon] Confirmed 202 of 326 bases (61.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9988_length_326_cov_20.614634:1-326 [pilon] Processing NODE_14017_length_243_cov_14.065574:1-243 [pilon] NODE_3415_length_796_cov_35.733333:1-796 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 585, Coverage: 79, minDepth: 20 [pilon] Confirmed 617 of 796 bases (77.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3415_length_796_cov_35.733333:1-796 [pilon] Processing NODE_6837_length_481_cov_10.452778:1-481 [pilon] NODE_7177_length_461_cov_2.770588:1-461 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 224 of 461 bases (48.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7177_length_461_cov_2.770588:1-461 [pilon] Processing NODE_2962_length_880_cov_29.438735:1-880 [pilon] NODE_7251_length_457_cov_12.270833:1-457 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 124, Coverage: 20, minDepth: 5 [pilon] Confirmed 333 of 457 bases (72.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7251_length_457_cov_12.270833:1-457 [pilon] Processing NODE_6041_length_537_cov_15.271635:1-537 [pilon] NODE_11632_length_258_cov_22.145985:1-258 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 67, Coverage: 5, minDepth: 5 [pilon] Confirmed 146 of 258 bases (56.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11632_length_258_cov_22.145985:1-258 [pilon] Processing NODE_10432_length_307_cov_11.838710:1-307 [pilon] NODE_215_length_2458_cov_9.344031:1-2458 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 511, Coverage: 26, minDepth: 7 [pilon] Confirmed 1936 of 2458 bases (78.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_215_length_2458_cov_9.344031:1-2458 [pilon] Processing NODE_15131_length_202_cov_6.000000:1-202 [pilon] NODE_11554_length_261_cov_38.642857:1-261 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 118, Coverage: 10, minDepth: 5 [pilon] Confirmed 216 of 261 bases (82.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11554_length_261_cov_38.642857:1-261 [pilon] Processing NODE_5196_length_602_cov_16.528067:1-602 [pilon] NODE_2514_length_964_cov_23.881376:1-964 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 483, Coverage: 52, minDepth: 13 [pilon] Confirmed 670 of 964 bases (69.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2514_length_964_cov_23.881376:1-964 [pilon] Processing NODE_2272_length_1016_cov_10.841341:1-1016 [pilon] NODE_9699_length_338_cov_30.857143:1-338 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 147, Coverage: 23, minDepth: 6 [pilon] Confirmed 268 of 338 bases (79.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9699_length_338_cov_30.857143:1-338 [pilon] Processing NODE_2148_length_1047_cov_2.409287:1-1047 [pilon] NODE_14722_length_243_cov_8.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14722_length_243_cov_8.401639:1-243 [pilon] Processing NODE_23_length_4817_cov_14.551107:1-4817 [pilon] NODE_12890_length_243_cov_24.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12890_length_243_cov_24.155738:1-243 [pilon] Processing NODE_1146_length_1420_cov_11.384911:1-1420 [pilon] NODE_1164_length_1412_cov_2.082107:1-1412 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 82, Coverage: 7, minDepth: 5 [pilon] Confirmed 1090 of 1412 bases (77.20%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1164_length_1412_cov_2.082107:1-1412 [pilon] Processing NODE_2275_length_1016_cov_2.603352:1-1016 [pilon] NODE_11285_length_273_cov_9.078947:1-273 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11285_length_273_cov_9.078947:1-273 [pilon] Processing NODE_3083_length_857_cov_13.845109:1-857 [pilon] NODE_1370_length_1310_cov_22.300252:1-1310 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 624, Coverage: 54, minDepth: 14 [pilon] Confirmed 1081 of 1310 bases (82.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1370_length_1310_cov_22.300252:1-1310 [pilon] Processing NODE_2903_length_892_cov_2.743191:1-892 [pilon] NODE_593_length_1819_cov_5.106007:1-1819 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 226, Coverage: 16, minDepth: 5 [pilon] Confirmed 1368 of 1819 bases (75.21%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_593_length_1819_cov_5.106007:1-1819 [pilon] Processing NODE_4732_length_641_cov_1.257692:1-641 [pilon] NODE_9441_length_348_cov_20.841410:1-348 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 111, Coverage: 12, minDepth: 5 [pilon] Confirmed 239 of 348 bases (68.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9441_length_348_cov_20.841410:1-348 [pilon] Processing NODE_8881_length_372_cov_35.482072:1-372 [pilon] NODE_10948_length_285_cov_36.798780:1-285 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 139, Coverage: 8, minDepth: 5 [pilon] Confirmed 211 of 285 bases (74.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10948_length_285_cov_36.798780:1-285 [pilon] Processing NODE_4853_length_630_cov_48.267191:1-630 [pilon] NODE_9310_length_354_cov_11.785408:1-354 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 58, Coverage: 11, minDepth: 5 [pilon] Confirmed 253 of 354 bases (71.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9310_length_354_cov_11.785408:1-354 [pilon] Processing NODE_11401_length_267_cov_18.561644:1-267 [pilon] NODE_10804_length_293_cov_10.191860:1-293 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 71, Coverage: 4, minDepth: 5 [pilon] Confirmed 93 of 293 bases (31.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10804_length_293_cov_10.191860:1-293 [pilon] Processing NODE_11565_length_261_cov_24.935714:1-261 [pilon] NODE_11586_length_261_cov_13.785714:1-261 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 43, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11586_length_261_cov_13.785714:1-261 [pilon] Processing NODE_4625_length_650_cov_4.886578:1-650 [pilon] NODE_13048_length_243_cov_22.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13048_length_243_cov_22.442623:1-243 [pilon] Processing NODE_1592_length_1221_cov_35.983636:1-1221 [pilon] NODE_9542_length_345_cov_5.888393:1-345 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 41, Coverage: 4, minDepth: 5 [pilon] Confirmed 131 of 345 bases (37.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9542_length_345_cov_5.888393:1-345 [pilon] Processing NODE_4085_length_707_cov_3.005119:1-707 [pilon] NODE_2909_length_891_cov_2.083117:1-891 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 56, Coverage: 8, minDepth: 5 [pilon] Confirmed 596 of 891 bases (66.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2909_length_891_cov_2.083117:1-891 [pilon] Processing NODE_15061_length_239_cov_20.661017:1-239 [pilon] NODE_2702_length_929_cov_1.750000:1-929 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 36, Coverage: 4, minDepth: 5 [pilon] Confirmed 361 of 929 bases (38.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2702_length_929_cov_1.750000:1-929 [pilon] Processing NODE_10215_length_316_cov_17.189744:1-316 [pilon] NODE_13925_length_243_cov_14.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13925_length_243_cov_14.713115:1-243 [pilon] Processing NODE_13580_length_243_cov_17.680328:1-243 [pilon] NODE_1146_length_1420_cov_11.384911:1-1420 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 459, Coverage: 33, minDepth: 8 [pilon] Confirmed 904 of 1420 bases (63.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1146_length_1420_cov_11.384911:1-1420 [pilon] Processing NODE_6673_length_492_cov_18.601078:1-492 [pilon] NODE_14699_length_243_cov_8.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14699_length_243_cov_8.573770:1-243 [pilon] Processing NODE_8988_length_367_cov_16.325203:1-367 [pilon] NODE_14017_length_243_cov_14.065574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14017_length_243_cov_14.065574:1-243 [pilon] Processing NODE_3699_length_754_cov_33.047393:1-754 [pilon] NODE_11406_length_267_cov_16.986301:1-267 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 48, Coverage: 6, minDepth: 5 [pilon] Confirmed 184 of 267 bases (68.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11406_length_267_cov_16.986301:1-267 [pilon] Processing NODE_12418_length_243_cov_30.598361:1-243 [pilon] NODE_6041_length_537_cov_15.271635:1-537 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 153, Coverage: 9, minDepth: 5 [pilon] Confirmed 391 of 537 bases (72.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6041_length_537_cov_15.271635:1-537 [pilon] NODE_6837_length_481_cov_10.452778:1-481 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 134, Coverage: 22, minDepth: 6 [pilon] Confirmed 418 of 481 bases (86.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_1467_length_1275_cov_25.346620:1-1275 [pilon] Finished processing NODE_6837_length_481_cov_10.452778:1-481 [pilon] Processing NODE_11716_length_255_cov_27.947761:1-255 [pilon] NODE_2962_length_880_cov_29.438735:1-880 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 543, Coverage: 70, minDepth: 18 [pilon] Confirmed 662 of 880 bases (75.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2962_length_880_cov_29.438735:1-880 [pilon] Processing NODE_2285_length_1014_cov_22.057111:1-1014 [pilon] NODE_15131_length_202_cov_6.000000:1-202 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 202 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15131_length_202_cov_6.000000:1-202 [pilon] Processing NODE_12988_length_243_cov_23.081967:1-243 [pilon] NODE_10432_length_307_cov_11.838710:1-307 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 307 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10432_length_307_cov_11.838710:1-307 [pilon] Processing NODE_8232_length_407_cov_12.062937:1-407 [pilon] NODE_2148_length_1047_cov_2.409287:1-1047 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 75, Coverage: 9, minDepth: 5 [pilon] Confirmed 676 of 1047 bases (64.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2148_length_1047_cov_2.409287:1-1047 [pilon] Processing NODE_9845_length_333_cov_8.231132:1-333 [pilon] NODE_5196_length_602_cov_16.528067:1-602 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 193, Coverage: 23, minDepth: 6 [pilon] Confirmed 470 of 602 bases (78.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5196_length_602_cov_16.528067:1-602 [pilon] Processing NODE_3043_length_864_cov_20.738896:1-864 [pilon] NODE_2272_length_1016_cov_10.841341:1-1016 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 272, Coverage: 23, minDepth: 6 [pilon] Confirmed 801 of 1016 bases (78.84%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2272_length_1016_cov_10.841341:1-1016 [pilon] Processing NODE_13527_length_243_cov_18.090164:1-243 [pilon] NODE_2275_length_1016_cov_2.603352:1-1016 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 70, Coverage: 9, minDepth: 5 [pilon] Confirmed 901 of 1016 bases (88.68%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2275_length_1016_cov_2.603352:1-1016 [pilon] Processing NODE_10344_length_312_cov_9.178010:1-312 [pilon] NODE_4853_length_630_cov_48.267191:1-630 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 566, Coverage: 79, minDepth: 20 [pilon] Confirmed 551 of 630 bases (87.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4853_length_630_cov_48.267191:1-630 [pilon] Processing NODE_11725_length_255_cov_24.373134:1-255 [pilon] NODE_2903_length_892_cov_2.743191:1-892 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 60, Coverage: 9, minDepth: 5 [pilon] Confirmed 544 of 892 bases (60.99%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2903_length_892_cov_2.743191:1-892 [pilon] Processing NODE_585_length_1824_cov_36.702290:1-1824 [pilon] NODE_3083_length_857_cov_13.845109:1-857 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 265, Coverage: 31, minDepth: 8 [pilon] Confirmed 686 of 857 bases (80.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3083_length_857_cov_13.845109:1-857 [pilon] Processing NODE_9325_length_353_cov_39.693966:1-353 [pilon] NODE_8881_length_372_cov_35.482072:1-372 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 200, Coverage: 6, minDepth: 5 [pilon] Confirmed 149 of 372 bases (40.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8881_length_372_cov_35.482072:1-372 [pilon] Processing NODE_8075_length_414_cov_20.846416:1-414 [pilon] NODE_11565_length_261_cov_24.935714:1-261 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 70, Coverage: 5, minDepth: 5 [pilon] Confirmed 184 of 261 bases (70.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11565_length_261_cov_24.935714:1-261 [pilon] Processing NODE_9708_length_338_cov_8.516129:1-338 [pilon] NODE_4732_length_641_cov_1.257692:1-641 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 161 of 641 bases (25.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4732_length_641_cov_1.257692:1-641 [pilon] Processing NODE_5102_length_610_cov_14.218814:1-610 [pilon] NODE_4625_length_650_cov_4.886578:1-650 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 62, Coverage: 12, minDepth: 5 [pilon] Confirmed 508 of 650 bases (78.15%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4625_length_650_cov_4.886578:1-650 [pilon] Processing NODE_11847_length_252_cov_8.274809:1-252 [pilon] NODE_1592_length_1221_cov_35.983636:1-1221 log: [pilon] frags shovill.bam: coverage 96 [pilon] Total Reads: 899, Coverage: 96, minDepth: 24 [pilon] Confirmed 936 of 1221 bases (76.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1592_length_1221_cov_35.983636:1-1221 [pilon] Processing NODE_3081_length_857_cov_24.819293:1-857 [pilon] NODE_23_length_4817_cov_14.551107:1-4817 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 1572, Coverage: 42, minDepth: 11 [pilon] Confirmed 3861 of 4817 bases (80.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_23_length_4817_cov_14.551107:1-4817 [pilon] NODE_11401_length_267_cov_18.561644:1-267 log: [pilon] Processing NODE_6519_length_502_cov_4.183727:1-502 [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 46, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11401_length_267_cov_18.561644:1-267 [pilon] Processing NODE_5424_length_582_cov_23.772234:1-582 [pilon] NODE_4085_length_707_cov_3.005119:1-707 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 49, Coverage: 9, minDepth: 5 [pilon] Confirmed 585 of 707 bases (82.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4085_length_707_cov_3.005119:1-707 [pilon] Processing NODE_12496_length_243_cov_29.163934:1-243 [pilon] NODE_6673_length_492_cov_18.601078:1-492 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 141, Coverage: 26, minDepth: 7 [pilon] Confirmed 421 of 492 bases (85.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6673_length_492_cov_18.601078:1-492 [pilon] Processing NODE_3400_length_798_cov_16.271787:1-798 [pilon] NODE_15061_length_239_cov_20.661017:1-239 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 47, Coverage: 4, minDepth: 5 [pilon] Confirmed 82 of 239 bases (34.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15061_length_239_cov_20.661017:1-239 [pilon] Processing NODE_15144_length_194_cov_37.876712:1-194 [pilon] NODE_10215_length_316_cov_17.189744:1-316 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 43, Coverage: 4, minDepth: 5 [pilon] Confirmed 142 of 316 bases (44.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10215_length_316_cov_17.189744:1-316 [pilon] Processing NODE_154_length_2702_cov_10.435878:1-2702 [pilon] NODE_13580_length_243_cov_17.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13580_length_243_cov_17.680328:1-243 [pilon] Processing NODE_7920_length_422_cov_12.548173:1-422 [pilon] NODE_8075_length_414_cov_20.846416:1-414 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 130, Coverage: 17, minDepth: 5 [pilon] Confirmed 274 of 414 bases (66.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8075_length_414_cov_20.846416:1-414 [pilon] Processing NODE_10438_length_306_cov_27.059459:1-306 [pilon] NODE_585_length_1824_cov_36.702290:1-1824 log: [pilon] frags shovill.bam: coverage 97 [pilon] Total Reads: 1406, Coverage: 97, minDepth: 24 [pilon] Confirmed 1431 of 1824 bases (78.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_585_length_1824_cov_36.702290:1-1824 [pilon] Processing NODE_3426_length_795_cov_14.676558:1-795 [pilon] NODE_12418_length_243_cov_30.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12418_length_243_cov_30.598361:1-243 [pilon] Processing NODE_2855_length_901_cov_1.344872:1-901 [pilon] NODE_8988_length_367_cov_16.325203:1-367 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 81, Coverage: 7, minDepth: 5 [pilon] Confirmed 206 of 367 bases (56.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8988_length_367_cov_16.325203:1-367 [pilon] Processing NODE_9423_length_349_cov_11.293860:1-349 [pilon] NODE_3699_length_754_cov_33.047393:1-754 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 566, Coverage: 61, minDepth: 15 [pilon] Confirmed 574 of 754 bases (76.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3699_length_754_cov_33.047393:1-754 [pilon] Processing NODE_13735_length_243_cov_16.155738:1-243 [pilon] NODE_3081_length_857_cov_24.819293:1-857 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 410, Coverage: 48, minDepth: 12 [pilon] Confirmed 723 of 857 bases (84.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3081_length_857_cov_24.819293:1-857 [pilon] Processing NODE_9842_length_333_cov_9.957547:1-333 [pilon] NODE_11716_length_255_cov_27.947761:1-255 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 192 of 255 bases (75.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11716_length_255_cov_27.947761:1-255 [pilon] Processing NODE_9340_length_353_cov_8.284483:1-353 [pilon] NODE_1467_length_1275_cov_25.346620:1-1275 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 660, Coverage: 61, minDepth: 15 [pilon] Confirmed 852 of 1275 bases (66.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1467_length_1275_cov_25.346620:1-1275 [pilon] Processing NODE_8143_length_411_cov_15.024138:1-411 [pilon] NODE_5424_length_582_cov_23.772234:1-582 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 258, Coverage: 28, minDepth: 7 [pilon] Confirmed 395 of 582 bases (67.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5424_length_582_cov_23.772234:1-582 [pilon] Processing NODE_5522_length_576_cov_1.389011:1-576 [pilon] NODE_8232_length_407_cov_12.062937:1-407 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 83, Coverage: 14, minDepth: 5 [pilon] Confirmed 314 of 407 bases (77.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8232_length_407_cov_12.062937:1-407 [pilon] Processing NODE_1639_length_1204_cov_2.268698:1-1204 [pilon] NODE_9845_length_333_cov_8.231132:1-333 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 16, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 333 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9845_length_333_cov_8.231132:1-333 [pilon] Processing NODE_4802_length_634_cov_13.345029:1-634 [pilon] NODE_12988_length_243_cov_23.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12988_length_243_cov_23.081967:1-243 [pilon] Processing NODE_4353_length_675_cov_31.788809:1-675 [pilon] NODE_2285_length_1014_cov_22.057111:1-1014 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 462, Coverage: 36, minDepth: 9 [pilon] Confirmed 755 of 1014 bases (74.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2285_length_1014_cov_22.057111:1-1014 [pilon] Processing NODE_10158_length_318_cov_35.005076:1-318 [pilon] NODE_13527_length_243_cov_18.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13527_length_243_cov_18.090164:1-243 [pilon] Processing NODE_10818_length_291_cov_32.170588:1-291 [pilon] NODE_10344_length_312_cov_9.178010:1-312 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 39, Coverage: 6, minDepth: 5 [pilon] Confirmed 175 of 312 bases (56.09%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10344_length_312_cov_9.178010:1-312 [pilon] Processing NODE_9223_length_357_cov_12.139831:1-357 [pilon] NODE_3043_length_864_cov_20.738896:1-864 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 376, Coverage: 42, minDepth: 11 [pilon] Confirmed 462 of 864 bases (53.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3043_length_864_cov_20.738896:1-864 [pilon] Processing NODE_5373_length_586_cov_15.447312:1-586 [pilon] NODE_11725_length_255_cov_24.373134:1-255 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 74, Coverage: 7, minDepth: 5 [pilon] Confirmed 168 of 255 bases (65.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11725_length_255_cov_24.373134:1-255 [pilon] Processing NODE_11571_length_261_cov_22.992857:1-261 [pilon] NODE_9708_length_338_cov_8.516129:1-338 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 34, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 338 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9708_length_338_cov_8.516129:1-338 [pilon] Processing NODE_3827_length_738_cov_3.581848:1-738 [pilon] NODE_9325_length_353_cov_39.693966:1-353 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 240, Coverage: 35, minDepth: 9 [pilon] Confirmed 313 of 353 bases (88.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9325_length_353_cov_39.693966:1-353 [pilon] Processing NODE_14795_length_243_cov_7.745902:1-243 [pilon] NODE_11847_length_252_cov_8.274809:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11847_length_252_cov_8.274809:1-252 [pilon] Processing NODE_9924_length_329_cov_10.346154:1-329 [pilon] NODE_5102_length_610_cov_14.218814:1-610 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 152, Coverage: 25, minDepth: 6 [pilon] Confirmed 489 of 610 bases (80.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5102_length_610_cov_14.218814:1-610 [pilon] Processing NODE_4559_length_657_cov_1.503731:1-657 [pilon] NODE_3400_length_798_cov_16.271787:1-798 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 257, Coverage: 20, minDepth: 5 [pilon] Confirmed 569 of 798 bases (71.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3400_length_798_cov_16.271787:1-798 [pilon] Processing NODE_1727_length_1171_cov_3.029524:1-1171 [pilon] NODE_6519_length_502_cov_4.183727:1-502 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 41, Coverage: 10, minDepth: 5 [pilon] Confirmed 312 of 502 bases (62.15%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6519_length_502_cov_4.183727:1-502 [pilon] Processing NODE_14604_length_243_cov_9.360656:1-243 [pilon] NODE_10438_length_306_cov_27.059459:1-306 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 110, Coverage: 17, minDepth: 5 [pilon] Confirmed 263 of 306 bases (85.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10438_length_306_cov_27.059459:1-306 [pilon] Processing NODE_2642_length_939_cov_29.940098:1-939 [pilon] NODE_12496_length_243_cov_29.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12496_length_243_cov_29.163934:1-243 [pilon] Processing NODE_1193_length_1401_cov_10.249219:1-1401 [pilon] NODE_9842_length_333_cov_9.957547:1-333 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 46, Coverage: 7, minDepth: 5 [pilon] Confirmed 236 of 333 bases (70.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9842_length_333_cov_9.957547:1-333 [pilon] Processing NODE_6995_length_471_cov_43.342857:1-471 [pilon] NODE_15144_length_194_cov_37.876712:1-194 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 194 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15144_length_194_cov_37.876712:1-194 [pilon] Processing NODE_10532_length_303_cov_23.060440:1-303 [pilon] NODE_5522_length_576_cov_1.389011:1-576 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 315 of 576 bases (54.69%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5522_length_576_cov_1.389011:1-576 [pilon] Processing NODE_4030_length_713_cov_0.831081:1-713 [pilon] NODE_1639_length_1204_cov_2.268698:1-1204 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 72, Coverage: 8, minDepth: 5 [pilon] Confirmed 774 of 1204 bases (64.29%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1639_length_1204_cov_2.268698:1-1204 [pilon] Processing NODE_1944_length_1099_cov_21.518405:1-1099 [pilon] NODE_7920_length_422_cov_12.548173:1-422 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 84, Coverage: 10, minDepth: 5 [pilon] Confirmed 301 of 422 bases (71.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7920_length_422_cov_12.548173:1-422 [pilon] Processing NODE_9394_length_351_cov_6.895652:1-351 [pilon] NODE_154_length_2702_cov_10.435878:1-2702 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 813, Coverage: 34, minDepth: 9 [pilon] Confirmed 2308 of 2702 bases (85.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_154_length_2702_cov_10.435878:1-2702 [pilon] Processing NODE_1352_length_1318_cov_3.279031:1-1318 [pilon] NODE_13735_length_243_cov_16.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13735_length_243_cov_16.155738:1-243 [pilon] Processing NODE_7839_length_425_cov_26.062500:1-425 [pilon] NODE_3426_length_795_cov_14.676558:1-795 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 243, Coverage: 26, minDepth: 7 [pilon] Confirmed 613 of 795 bases (77.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3426_length_795_cov_14.676558:1-795 [pilon] Processing NODE_15079_length_234_cov_14.787611:1-234 [pilon] NODE_2855_length_901_cov_1.344872:1-901 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 41, Coverage: 6, minDepth: 5 [pilon] Confirmed 512 of 901 bases (56.83%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2855_length_901_cov_1.344872:1-901 [pilon] Processing NODE_10261_length_315_cov_9.030928:1-315 [pilon] NODE_8143_length_411_cov_15.024138:1-411 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 84, Coverage: 11, minDepth: 5 [pilon] Confirmed 310 of 411 bases (75.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8143_length_411_cov_15.024138:1-411 [pilon] Processing NODE_791_length_1630_cov_3.599735:1-1630 [pilon] NODE_1727_length_1171_cov_3.029524:1-1171 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 83, Coverage: 9, minDepth: 5 [pilon] Confirmed 816 of 1171 bases (69.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1727_length_1171_cov_3.029524:1-1171 [pilon] Processing NODE_10894_length_288_cov_23.443114:1-288 [pilon] NODE_9423_length_349_cov_11.293860:1-349 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 63, Coverage: 9, minDepth: 5 [pilon] Confirmed 229 of 349 bases (65.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9423_length_349_cov_11.293860:1-349 [pilon] Processing NODE_4663_length_647_cov_4.022814:1-647 [pilon] NODE_9340_length_353_cov_8.284483:1-353 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 68, Coverage: 3, minDepth: 5 [pilon] Confirmed 110 of 353 bases (31.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9340_length_353_cov_8.284483:1-353 [pilon] Processing NODE_9281_length_354_cov_24.283262:1-354 [pilon] NODE_4802_length_634_cov_13.345029:1-634 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 161, Coverage: 15, minDepth: 5 [pilon] Confirmed 342 of 634 bases (53.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4802_length_634_cov_13.345029:1-634 [pilon] Processing NODE_47_length_3731_cov_15.499723:1-3731 [pilon] NODE_10818_length_291_cov_32.170588:1-291 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 112, Coverage: 9, minDepth: 5 [pilon] Confirmed 187 of 291 bases (64.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10818_length_291_cov_32.170588:1-291 [pilon] Processing NODE_14275_length_243_cov_12.049180:1-243 [pilon] NODE_5373_length_586_cov_15.447312:1-586 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 192, Coverage: 17, minDepth: 5 [pilon] Confirmed 444 of 586 bases (75.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5373_length_586_cov_15.447312:1-586 [pilon] Processing NODE_13251_length_243_cov_20.639344:1-243 [pilon] NODE_4353_length_675_cov_31.788809:1-675 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 449, Coverage: 50, minDepth: 13 [pilon] Confirmed 528 of 675 bases (78.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4353_length_675_cov_31.788809:1-675 [pilon] Processing NODE_7225_length_459_cov_2.020710:1-459 [pilon] NODE_9223_length_357_cov_12.139831:1-357 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 209 of 357 bases (58.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9223_length_357_cov_12.139831:1-357 [pilon] Processing NODE_12492_length_243_cov_29.213115:1-243 [pilon] NODE_10158_length_318_cov_35.005076:1-318 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 148, Coverage: 13, minDepth: 5 [pilon] Confirmed 232 of 318 bases (72.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10158_length_318_cov_35.005076:1-318 [pilon] Processing NODE_4227_length_690_cov_17.179262:1-690 [pilon] NODE_11571_length_261_cov_22.992857:1-261 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 66, Coverage: 6, minDepth: 5 [pilon] Confirmed 154 of 261 bases (59.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11571_length_261_cov_22.992857:1-261 [pilon] Processing NODE_11700_length_256_cov_5.185185:1-256 [pilon] NODE_3827_length_738_cov_3.581848:1-738 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 64, Coverage: 11, minDepth: 5 [pilon] Confirmed 627 of 738 bases (84.96%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3827_length_738_cov_3.581848:1-738 [pilon] Processing NODE_4987_length_619_cov_23.359438:1-619 [pilon] NODE_2642_length_939_cov_29.940098:1-939 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 585, Coverage: 52, minDepth: 13 [pilon] Confirmed 698 of 939 bases (74.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2642_length_939_cov_29.940098:1-939 [pilon] Processing NODE_11882_length_249_cov_30.390625:1-249 [pilon] NODE_14795_length_243_cov_7.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14795_length_243_cov_7.745902:1-243 [pilon] Processing NODE_11251_length_273_cov_23.894737:1-273 [pilon] NODE_4559_length_657_cov_1.503731:1-657 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 24, Coverage: 4, minDepth: 5 [pilon] Confirmed 253 of 657 bases (38.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4559_length_657_cov_1.503731:1-657 [pilon] Processing NODE_14222_length_243_cov_12.393443:1-243 [pilon] NODE_9924_length_329_cov_10.346154:1-329 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 55, Coverage: 6, minDepth: 5 [pilon] Confirmed 247 of 329 bases (75.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9924_length_329_cov_10.346154:1-329 [pilon] Processing NODE_6945_length_474_cov_31.954674:1-474 [pilon] NODE_14604_length_243_cov_9.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14604_length_243_cov_9.360656:1-243 [pilon] Processing NODE_6909_length_477_cov_10.578652:1-477 [pilon] NODE_6995_length_471_cov_43.342857:1-471 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 332, Coverage: 52, minDepth: 13 [pilon] Confirmed 415 of 471 bases (88.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6995_length_471_cov_43.342857:1-471 [pilon] Processing NODE_2554_length_956_cov_9.071856:1-956 [pilon] NODE_4030_length_713_cov_0.831081:1-713 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 35 of 713 bases (4.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4030_length_713_cov_0.831081:1-713 [pilon] Processing NODE_8646_length_385_cov_29.670455:1-385 [pilon] NODE_1944_length_1099_cov_21.518405:1-1099 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 491, Coverage: 47, minDepth: 12 [pilon] Confirmed 807 of 1099 bases (73.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1944_length_1099_cov_21.518405:1-1099 [pilon] Processing NODE_13051_length_243_cov_22.377049:1-243 [pilon] NODE_1193_length_1401_cov_10.249219:1-1401 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 497, Coverage: 41, minDepth: 10 [pilon] Confirmed 1151 of 1401 bases (82.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1193_length_1401_cov_10.249219:1-1401 [pilon] Processing NODE_12616_length_243_cov_27.385246:1-243 [pilon] NODE_10532_length_303_cov_23.060440:1-303 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 88, Coverage: 3, minDepth: 5 [pilon] Confirmed 115 of 303 bases (37.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10532_length_303_cov_23.060440:1-303 [pilon] Processing NODE_9548_length_344_cov_26.910314:1-344 [pilon] NODE_10894_length_288_cov_23.443114:1-288 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 87, Coverage: 8, minDepth: 5 [pilon] Confirmed 187 of 288 bases (64.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10894_length_288_cov_23.443114:1-288 [pilon] Processing NODE_12165_length_243_cov_38.352459:1-243 [pilon] NODE_9394_length_351_cov_6.895652:1-351 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 41, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 351 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9394_length_351_cov_6.895652:1-351 [pilon] Processing NODE_14070_length_243_cov_13.672131:1-243 [pilon] NODE_11882_length_249_cov_30.390625:1-249 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 78, Coverage: 7, minDepth: 5 [pilon] Confirmed 182 of 249 bases (73.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11882_length_249_cov_30.390625:1-249 [pilon] Processing NODE_9158_length_359_cov_29.991597:1-359 [pilon] NODE_15079_length_234_cov_14.787611:1-234 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 34, Coverage: 4, minDepth: 5 [pilon] Confirmed 79 of 234 bases (33.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15079_length_234_cov_14.787611:1-234 [pilon] Processing NODE_15186_length_165_cov_26.454545:1-165 [pilon] NODE_10261_length_315_cov_9.030928:1-315 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 43, Coverage: 2, minDepth: 5 [pilon] Confirmed 30 of 315 bases (9.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10261_length_315_cov_9.030928:1-315 [pilon] Processing NODE_11744_length_255_cov_19.283582:1-255 [pilon] NODE_1352_length_1318_cov_3.279031:1-1318 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 94, Coverage: 9, minDepth: 5 [pilon] Confirmed 1029 of 1318 bases (78.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1352_length_1318_cov_3.279031:1-1318 [pilon] Processing NODE_9230_length_357_cov_8.872881:1-357 [pilon] NODE_7839_length_425_cov_26.062500:1-425 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 190, Coverage: 23, minDepth: 6 [pilon] Confirmed 304 of 425 bases (71.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7839_length_425_cov_26.062500:1-425 [pilon] Processing NODE_11329_length_270_cov_21.268456:1-270 [pilon] NODE_2554_length_956_cov_9.071856:1-956 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 178, Coverage: 24, minDepth: 6 [pilon] Confirmed 816 of 956 bases (85.36%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2554_length_956_cov_9.071856:1-956 [pilon] Processing NODE_1874_length_1121_cov_12.978000:1-1121 [pilon] NODE_12492_length_243_cov_29.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12492_length_243_cov_29.213115:1-243 [pilon] Processing NODE_6566_length_499_cov_1.849206:1-499 [pilon] NODE_13251_length_243_cov_20.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13251_length_243_cov_20.639344:1-243 [pilon] Processing NODE_9807_length_333_cov_31.518868:1-333 [pilon] NODE_791_length_1630_cov_3.599735:1-1630 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 147, Coverage: 11, minDepth: 5 [pilon] Confirmed 1335 of 1630 bases (81.90%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_791_length_1630_cov_3.599735:1-1630 [pilon] Processing NODE_6911_length_477_cov_8.544944:1-477 [pilon] NODE_4663_length_647_cov_4.022814:1-647 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 81, Coverage: 6, minDepth: 5 [pilon] Confirmed 272 of 647 bases (42.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4663_length_647_cov_4.022814:1-647 [pilon] Processing NODE_13850_length_243_cov_15.303279:1-243 [pilon] NODE_14275_length_243_cov_12.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14275_length_243_cov_12.049180:1-243 [pilon] Processing NODE_8226_length_407_cov_18.807692:1-407 [pilon] NODE_9281_length_354_cov_24.283262:1-354 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 138, Coverage: 4, minDepth: 5 [pilon] Confirmed 132 of 354 bases (37.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9281_length_354_cov_24.283262:1-354 [pilon] Processing NODE_5558_length_573_cov_17.464602:1-573 [pilon] NODE_7225_length_459_cov_2.020710:1-459 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 217 of 459 bases (47.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7225_length_459_cov_2.020710:1-459 [pilon] Processing NODE_4567_length_656_cov_12.001869:1-656 [pilon] NODE_8646_length_385_cov_29.670455:1-385 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 176, Coverage: 24, minDepth: 6 [pilon] Confirmed 312 of 385 bases (81.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8646_length_385_cov_29.670455:1-385 [pilon] Processing NODE_12352_length_243_cov_32.032787:1-243 [pilon] NODE_4227_length_690_cov_17.179262:1-690 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 246, Coverage: 26, minDepth: 7 [pilon] Confirmed 603 of 690 bases (87.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4227_length_690_cov_17.179262:1-690 [pilon] Processing NODE_7073_length_467_cov_0.502890:1-467 [pilon] NODE_13051_length_243_cov_22.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13051_length_243_cov_22.377049:1-243 [pilon] Processing NODE_2949_length_882_cov_1.860710:1-882 [pilon] NODE_11700_length_256_cov_5.185185:1-256 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 24, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 256 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11700_length_256_cov_5.185185:1-256 [pilon] Processing NODE_10264_length_315_cov_8.577320:1-315 [pilon] NODE_11251_length_273_cov_23.894737:1-273 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 197 of 273 bases (72.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11251_length_273_cov_23.894737:1-273 [pilon] Processing NODE_13832_length_243_cov_15.385246:1-243 [pilon] NODE_4987_length_619_cov_23.359438:1-619 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 311, Coverage: 34, minDepth: 9 [pilon] Confirmed 386 of 619 bases (62.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4987_length_619_cov_23.359438:1-619 [pilon] Processing NODE_7464_length_445_cov_1.481481:1-445 [pilon] NODE_47_length_3731_cov_15.499723:1-3731 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 1328, Coverage: 38, minDepth: 10 [pilon] Confirmed 3352 of 3731 bases (89.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_47_length_3731_cov_15.499723:1-3731 [pilon] Processing NODE_413_length_2029_cov_18.002621:1-2029 [pilon] NODE_6909_length_477_cov_10.578652:1-477 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 81, Coverage: 12, minDepth: 5 [pilon] Confirmed 332 of 477 bases (69.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6909_length_477_cov_10.578652:1-477 [pilon] Processing NODE_7917_length_422_cov_13.983389:1-422 [pilon] NODE_14222_length_243_cov_12.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14222_length_243_cov_12.393443:1-243 [pilon] Processing NODE_4961_length_621_cov_38.668000:1-621 [pilon] NODE_6945_length_474_cov_31.954674:1-474 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 253, Coverage: 42, minDepth: 11 [pilon] Confirmed 341 of 474 bases (71.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6945_length_474_cov_31.954674:1-474 [pilon] Processing NODE_8557_length_390_cov_22.394052:1-390 [pilon] NODE_12165_length_243_cov_38.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12165_length_243_cov_38.352459:1-243 [pilon] Processing NODE_12505_length_243_cov_29.016393:1-243 [pilon] NODE_12616_length_243_cov_27.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12616_length_243_cov_27.385246:1-243 [pilon] Processing NODE_7303_length_454_cov_2.228228:1-454 [pilon] NODE_9158_length_359_cov_29.991597:1-359 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 108, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 359 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9158_length_359_cov_29.991597:1-359 [pilon] Processing NODE_9793_length_334_cov_20.708920:1-334 [pilon] NODE_9548_length_344_cov_26.910314:1-344 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 137, Coverage: 10, minDepth: 5 [pilon] Confirmed 252 of 344 bases (73.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9548_length_344_cov_26.910314:1-344 [pilon] Processing NODE_4294_length_682_cov_2.748663:1-682 [pilon] NODE_1874_length_1121_cov_12.978000:1-1121 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 491, Coverage: 43, minDepth: 11 [pilon] Confirmed 891 of 1121 bases (79.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1874_length_1121_cov_12.978000:1-1121 [pilon] Processing NODE_12099_length_244_cov_7.544715:1-244 [pilon] NODE_14070_length_243_cov_13.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14070_length_243_cov_13.672131:1-243 [pilon] Processing NODE_3692_length_755_cov_26.321767:1-755 [pilon] NODE_12352_length_243_cov_32.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12352_length_243_cov_32.032787:1-243 [pilon] Processing NODE_14646_length_243_cov_9.057377:1-243 [pilon] NODE_2949_length_882_cov_1.860710:1-882 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 38, Coverage: 6, minDepth: 5 [pilon] Confirmed 495 of 882 bases (56.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2949_length_882_cov_1.860710:1-882 [pilon] Processing NODE_4095_length_706_cov_1.003419:1-706 [pilon] NODE_15186_length_165_cov_26.454545:1-165 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 165 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15186_length_165_cov_26.454545:1-165 [pilon] Processing NODE_8500_length_394_cov_7.117216:1-394 [pilon] NODE_6566_length_499_cov_1.849206:1-499 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 304 of 499 bases (60.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6566_length_499_cov_1.849206:1-499 [pilon] Processing NODE_10210_length_316_cov_36.333333:1-316 [pilon] NODE_13850_length_243_cov_15.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13850_length_243_cov_15.303279:1-243 [pilon] Processing NODE_4067_length_709_cov_1.528912:1-709 [pilon] NODE_11329_length_270_cov_21.268456:1-270 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 72, Coverage: 8, minDepth: 5 [pilon] Confirmed 216 of 270 bases (80.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11329_length_270_cov_21.268456:1-270 [pilon] Processing NODE_13019_length_243_cov_22.737705:1-243 [pilon] NODE_9230_length_357_cov_8.872881:1-357 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 58, Coverage: 5, minDepth: 5 [pilon] Confirmed 170 of 357 bases (47.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9230_length_357_cov_8.872881:1-357 [pilon] Processing NODE_10128_length_321_cov_5.865000:1-321 [pilon] NODE_11744_length_255_cov_19.283582:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 61, Coverage: 4, minDepth: 5 [pilon] Confirmed 124 of 255 bases (48.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11744_length_255_cov_19.283582:1-255 [pilon] Processing NODE_6137_length_529_cov_14.522059:1-529 [pilon] NODE_12505_length_243_cov_29.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12505_length_243_cov_29.016393:1-243 [pilon] Processing NODE_1315_length_1333_cov_27.200495:1-1333 [pilon] NODE_5558_length_573_cov_17.464602:1-573 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 160, Coverage: 22, minDepth: 6 [pilon] Confirmed 405 of 573 bases (70.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5558_length_573_cov_17.464602:1-573 [pilon] Processing NODE_3514_length_781_cov_20.327273:1-781 [pilon] NODE_8226_length_407_cov_18.807692:1-407 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 117, Coverage: 7, minDepth: 5 [pilon] Confirmed 224 of 407 bases (55.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8226_length_407_cov_18.807692:1-407 [pilon] Processing NODE_7919_length_422_cov_12.744186:1-422 [pilon] NODE_6911_length_477_cov_8.544944:1-477 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 69, Coverage: 11, minDepth: 5 [pilon] Confirmed 354 of 477 bases (74.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6911_length_477_cov_8.544944:1-477 [pilon] Processing NODE_4199_length_694_cov_7.359511:1-694 [pilon] NODE_9807_length_333_cov_31.518868:1-333 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 154, Coverage: 17, minDepth: 5 [pilon] Confirmed 237 of 333 bases (71.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9807_length_333_cov_31.518868:1-333 [pilon] Processing NODE_14002_length_243_cov_14.163934:1-243 [pilon] NODE_4567_length_656_cov_12.001869:1-656 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 151, Coverage: 29, minDepth: 7 [pilon] Confirmed 531 of 656 bases (80.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4567_length_656_cov_12.001869:1-656 [pilon] Processing NODE_12416_length_243_cov_30.631148:1-243 [pilon] NODE_10264_length_315_cov_8.577320:1-315 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 34, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 315 bases (40.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10264_length_315_cov_8.577320:1-315 [pilon] Processing NODE_2058_length_1070_cov_1.587987:1-1070 [pilon] NODE_7073_length_467_cov_0.502890:1-467 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 467 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7073_length_467_cov_0.502890:1-467 [pilon] Processing NODE_13459_length_243_cov_18.778689:1-243 [pilon] NODE_7917_length_422_cov_13.983389:1-422 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 99, Coverage: 11, minDepth: 5 [pilon] Confirmed 259 of 422 bases (61.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7917_length_422_cov_13.983389:1-422 [pilon] Processing NODE_13791_length_243_cov_15.778689:1-243 [pilon] NODE_13832_length_243_cov_15.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13832_length_243_cov_15.385246:1-243 [pilon] Processing NODE_2523_length_962_cov_49.019025:1-962 [pilon] NODE_7464_length_445_cov_1.481481:1-445 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 267 of 445 bases (60.00%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7464_length_445_cov_1.481481:1-445 [pilon] Processing NODE_10627_length_300_cov_19.385475:1-300 [pilon] NODE_413_length_2029_cov_18.002621:1-2029 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 803, Coverage: 36, minDepth: 9 [pilon] Confirmed 1760 of 2029 bases (86.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_413_length_2029_cov_18.002621:1-2029 [pilon] Processing NODE_9432_length_348_cov_28.295154:1-348 [pilon] NODE_9793_length_334_cov_20.708920:1-334 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 56, Coverage: 3, minDepth: 5 [pilon] Confirmed 113 of 334 bases (33.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9793_length_334_cov_20.708920:1-334 [pilon] Processing NODE_12905_length_243_cov_24.032787:1-243 [pilon] NODE_8557_length_390_cov_22.394052:1-390 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 119, Coverage: 19, minDepth: 5 [pilon] Confirmed 300 of 390 bases (76.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8557_length_390_cov_22.394052:1-390 [pilon] Processing NODE_3910_length_726_cov_4.327273:1-726 [pilon] NODE_4961_length_621_cov_38.668000:1-621 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 414, Coverage: 48, minDepth: 12 [pilon] Confirmed 431 of 621 bases (69.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4961_length_621_cov_38.668000:1-621 [pilon] Processing NODE_4790_length_636_cov_1.318447:1-636 [pilon] NODE_12099_length_244_cov_7.544715:1-244 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12099_length_244_cov_7.544715:1-244 [pilon] Processing NODE_242_length_2372_cov_2.565082:1-2372 [pilon] NODE_7303_length_454_cov_2.228228:1-454 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 259 of 454 bases (57.05%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7303_length_454_cov_2.228228:1-454 [pilon] Processing NODE_3567_length_774_cov_26.024502:1-774 [pilon] NODE_4095_length_706_cov_1.003419:1-706 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 706 bases (18.27%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4095_length_706_cov_1.003419:1-706 [pilon] Processing NODE_12288_length_243_cov_33.483607:1-243 [pilon] NODE_4294_length_682_cov_2.748663:1-682 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 407 of 682 bases (59.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4294_length_682_cov_2.748663:1-682 [pilon] Processing NODE_14579_length_243_cov_9.606557:1-243 [pilon] NODE_1315_length_1333_cov_27.200495:1-1333 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 801, Coverage: 49, minDepth: 12 [pilon] Confirmed 1244 of 1333 bases (93.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1315_length_1333_cov_27.200495:1-1333 [pilon] Processing NODE_12482_length_243_cov_29.434426:1-243 [pilon] NODE_3692_length_755_cov_26.321767:1-755 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 480, Coverage: 53, minDepth: 13 [pilon] Confirmed 668 of 755 bases (88.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3692_length_755_cov_26.321767:1-755 [pilon] Processing NODE_13758_length_243_cov_15.991803:1-243 [pilon] NODE_14646_length_243_cov_9.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14646_length_243_cov_9.057377:1-243 [pilon] Processing NODE_6736_length_488_cov_0.828338:1-488 [pilon] NODE_8500_length_394_cov_7.117216:1-394 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 42, Coverage: 7, minDepth: 5 [pilon] Confirmed 334 of 394 bases (84.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8500_length_394_cov_7.117216:1-394 [pilon] Processing NODE_9132_length_360_cov_17.753138:1-360 [pilon] NODE_4067_length_709_cov_1.528912:1-709 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 210 of 709 bases (29.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4067_length_709_cov_1.528912:1-709 [pilon] Processing NODE_579_length_1829_cov_2.723653:1-1829 [pilon] NODE_10627_length_300_cov_19.385475:1-300 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 75, Coverage: 6, minDepth: 5 [pilon] Confirmed 181 of 300 bases (60.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10627_length_300_cov_19.385475:1-300 [pilon] Processing NODE_2664_length_935_cov_1.651106:1-935 [pilon] NODE_12905_length_243_cov_24.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12905_length_243_cov_24.032787:1-243 [pilon] Processing NODE_4698_length_643_cov_25.896552:1-643 [pilon] NODE_10210_length_316_cov_36.333333:1-316 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 155, Coverage: 16, minDepth: 5 [pilon] Confirmed 287 of 316 bases (90.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10210_length_316_cov_36.333333:1-316 [pilon] Processing NODE_6138_length_529_cov_6.933824:1-529 [pilon] NODE_10128_length_321_cov_5.865000:1-321 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 18, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 321 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10128_length_321_cov_5.865000:1-321 [pilon] Processing NODE_3365_length_802_cov_56.522761:1-802 [pilon] NODE_6137_length_529_cov_14.522059:1-529 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 129, Coverage: 12, minDepth: 5 [pilon] Confirmed 298 of 529 bases (56.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6137_length_529_cov_14.522059:1-529 [pilon] Processing NODE_10200_length_317_cov_24.683673:1-317 [pilon] NODE_7919_length_422_cov_12.744186:1-422 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 85, Coverage: 15, minDepth: 5 [pilon] Confirmed 316 of 422 bases (74.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7919_length_422_cov_12.744186:1-422 [pilon] Processing NODE_5543_length_574_cov_17.898455:1-574 [pilon] NODE_13019_length_243_cov_22.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13019_length_243_cov_22.737705:1-243 [pilon] Processing NODE_13503_length_243_cov_18.352459:1-243 [pilon] NODE_4199_length_694_cov_7.359511:1-694 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 207, Coverage: 26, minDepth: 7 [pilon] Confirmed 447 of 694 bases (64.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4199_length_694_cov_7.359511:1-694 [pilon] Processing NODE_3544_length_778_cov_10.394216:1-778 [pilon] NODE_242_length_2372_cov_2.565082:1-2372 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 181, Coverage: 10, minDepth: 5 [pilon] Confirmed 1894 of 2372 bases (79.85%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_242_length_2372_cov_2.565082:1-2372 [pilon] Processing NODE_8186_length_409_cov_2.024306:1-409 [pilon] NODE_2058_length_1070_cov_1.587987:1-1070 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 397 of 1070 bases (37.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2058_length_1070_cov_1.587987:1-1070 [pilon] Processing NODE_2645_length_939_cov_4.500000:1-939 [pilon] NODE_3514_length_781_cov_20.327273:1-781 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 351, Coverage: 34, minDepth: 9 [pilon] Confirmed 663 of 781 bases (84.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3514_length_781_cov_20.327273:1-781 [pilon] Processing NODE_7150_length_462_cov_28.249267:1-462 [pilon] NODE_13459_length_243_cov_18.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13459_length_243_cov_18.778689:1-243 [pilon] Processing NODE_4475_length_664_cov_1.132597:1-664 [pilon] NODE_13791_length_243_cov_15.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13791_length_243_cov_15.778689:1-243 [pilon] Processing NODE_6741_length_487_cov_26.046448:1-487 [pilon] NODE_14002_length_243_cov_14.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14002_length_243_cov_14.163934:1-243 [pilon] Processing NODE_11487_length_264_cov_14.608392:1-264 [pilon] NODE_12416_length_243_cov_30.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12416_length_243_cov_30.631148:1-243 [pilon] Processing NODE_7583_length_438_cov_27.268139:1-438 [pilon] NODE_9432_length_348_cov_28.295154:1-348 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 156, Coverage: 6, minDepth: 5 [pilon] Confirmed 149 of 348 bases (42.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9432_length_348_cov_28.295154:1-348 [pilon] Processing NODE_6745_length_487_cov_0.863388:1-487 [pilon] NODE_2523_length_962_cov_49.019025:1-962 log: [pilon] frags shovill.bam: coverage 114 [pilon] Total Reads: 938, Coverage: 114, minDepth: 29 [pilon] Confirmed 770 of 962 bases (80.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2523_length_962_cov_49.019025:1-962 [pilon] Processing NODE_1840_length_1132_cov_26.822948:1-1132 [pilon] NODE_12288_length_243_cov_33.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12288_length_243_cov_33.483607:1-243 [pilon] Processing NODE_14841_length_243_cov_7.319672:1-243 [pilon] NODE_3910_length_726_cov_4.327273:1-726 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 70, Coverage: 11, minDepth: 5 [pilon] Confirmed 589 of 726 bases (81.13%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3910_length_726_cov_4.327273:1-726 [pilon] Processing NODE_12768_length_243_cov_25.377049:1-243 [pilon] NODE_4790_length_636_cov_1.318447:1-636 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 356 of 636 bases (55.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4790_length_636_cov_1.318447:1-636 [pilon] Processing NODE_7311_length_453_cov_2.066265:1-453 [pilon] NODE_12482_length_243_cov_29.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12482_length_243_cov_29.434426:1-243 [pilon] Processing NODE_12400_length_243_cov_31.008197:1-243 [pilon] NODE_3567_length_774_cov_26.024502:1-774 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 385, Coverage: 46, minDepth: 12 [pilon] Confirmed 705 of 774 bases (91.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3567_length_774_cov_26.024502:1-774 [pilon] Processing NODE_12366_length_243_cov_31.762295:1-243 [pilon] NODE_14579_length_243_cov_9.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14579_length_243_cov_9.606557:1-243 [pilon] Processing NODE_295_length_2245_cov_24.419962:1-2245 [pilon] NODE_2664_length_935_cov_1.651106:1-935 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 45, Coverage: 6, minDepth: 5 [pilon] Confirmed 503 of 935 bases (53.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2664_length_935_cov_1.651106:1-935 [pilon] Processing NODE_7266_length_456_cov_20.713433:1-456 [pilon] NODE_4698_length_643_cov_25.896552:1-643 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 303, Coverage: 40, minDepth: 10 [pilon] Confirmed 466 of 643 bases (72.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4698_length_643_cov_25.896552:1-643 [pilon] Processing NODE_7065_length_467_cov_8.809249:1-467 [pilon] NODE_8186_length_409_cov_2.024306:1-409 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 138 of 409 bases (33.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8186_length_409_cov_2.024306:1-409 [pilon] Processing NODE_2286_length_1014_cov_14.397536:1-1014 [pilon] NODE_6736_length_488_cov_0.828338:1-488 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 78 of 488 bases (15.98%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6736_length_488_cov_0.828338:1-488 [pilon] Processing NODE_5385_length_585_cov_24.842672:1-585 [pilon] NODE_13758_length_243_cov_15.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13758_length_243_cov_15.991803:1-243 [pilon] Processing NODE_3805_length_740_cov_2.920840:1-740 [pilon] NODE_9132_length_360_cov_17.753138:1-360 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 91, Coverage: 13, minDepth: 5 [pilon] Confirmed 240 of 360 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9132_length_360_cov_17.753138:1-360 [pilon] Processing NODE_8158_length_411_cov_0.758621:1-411 [pilon] NODE_579_length_1829_cov_2.723653:1-1829 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 129, Coverage: 9, minDepth: 5 [pilon] Confirmed 1447 of 1829 bases (79.11%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_579_length_1829_cov_2.723653:1-1829 [pilon] Processing NODE_1251_length_1364_cov_13.033789:1-1364 [pilon] NODE_14841_length_243_cov_7.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14841_length_243_cov_7.319672:1-243 [pilon] Processing NODE_6463_length_506_cov_10.488312:1-506 [pilon] NODE_6138_length_529_cov_6.933824:1-529 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 68, Coverage: 11, minDepth: 5 [pilon] Confirmed 331 of 529 bases (62.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6138_length_529_cov_6.933824:1-529 [pilon] Processing NODE_481_length_1929_cov_3.586836:1-1929 [pilon] NODE_13503_length_243_cov_18.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13503_length_243_cov_18.352459:1-243 [pilon] Processing NODE_5906_length_547_cov_20.903756:1-547 [pilon] NODE_10200_length_317_cov_24.683673:1-317 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 124, Coverage: 11, minDepth: 5 [pilon] Confirmed 233 of 317 bases (73.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10200_length_317_cov_24.683673:1-317 [pilon] Processing NODE_15032_length_243_cov_5.073770:1-243 [pilon] NODE_5543_length_574_cov_17.898455:1-574 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 180, Coverage: 17, minDepth: 5 [pilon] Confirmed 381 of 574 bases (66.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5543_length_574_cov_17.898455:1-574 [pilon] Processing NODE_11091_length_279_cov_33.265823:1-279 [pilon] NODE_3544_length_778_cov_10.394216:1-778 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 163, Coverage: 27, minDepth: 7 [pilon] Confirmed 642 of 778 bases (82.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3544_length_778_cov_10.394216:1-778 [pilon] Processing NODE_1945_length_1099_cov_2.384458:1-1099 [pilon] NODE_3365_length_802_cov_56.522761:1-802 log: [pilon] frags shovill.bam: coverage 134 [pilon] Total Reads: 966, Coverage: 134, minDepth: 34 [pilon] Confirmed 675 of 802 bases (84.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3365_length_802_cov_56.522761:1-802 [pilon] Processing NODE_7109_length_465_cov_11.273256:1-465 [pilon] NODE_12400_length_243_cov_31.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12400_length_243_cov_31.008197:1-243 [pilon] Processing NODE_1110_length_1436_cov_15.076806:1-1436 [pilon] NODE_4475_length_664_cov_1.132597:1-664 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 187 of 664 bases (28.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4475_length_664_cov_1.132597:1-664 [pilon] Processing NODE_7409_length_447_cov_31.730061:1-447 [pilon] NODE_6741_length_487_cov_26.046448:1-487 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 200, Coverage: 19, minDepth: 5 [pilon] Confirmed 256 of 487 bases (52.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6741_length_487_cov_26.046448:1-487 [pilon] Processing NODE_9456_length_348_cov_10.471366:1-348 [pilon] NODE_2645_length_939_cov_4.500000:1-939 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 100, Coverage: 12, minDepth: 5 [pilon] Confirmed 805 of 939 bases (85.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2645_length_939_cov_4.500000:1-939 [pilon] Processing NODE_4192_length_694_cov_25.202443:1-694 [pilon] NODE_11487_length_264_cov_14.608392:1-264 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 46, Coverage: 7, minDepth: 5 [pilon] Confirmed 184 of 264 bases (69.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11487_length_264_cov_14.608392:1-264 [pilon] Processing NODE_10067_length_323_cov_7.485149:1-323 [pilon] NODE_7150_length_462_cov_28.249267:1-462 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 214, Coverage: 41, minDepth: 10 [pilon] Confirmed 412 of 462 bases (89.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7150_length_462_cov_28.249267:1-462 [pilon] Processing NODE_2506_length_966_cov_21.675740:1-966 [pilon] NODE_6745_length_487_cov_0.863388:1-487 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 15, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 487 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6745_length_487_cov_0.863388:1-487 [pilon] Processing NODE_5774_length_557_cov_31.532110:1-557 [pilon] NODE_7583_length_438_cov_27.268139:1-438 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 203, Coverage: 32, minDepth: 8 [pilon] Confirmed 370 of 438 bases (84.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7583_length_438_cov_27.268139:1-438 [pilon] Processing NODE_13450_length_243_cov_18.827869:1-243 [pilon] NODE_1840_length_1132_cov_26.822948:1-1132 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 638, Coverage: 57, minDepth: 14 [pilon] Confirmed 963 of 1132 bases (85.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1840_length_1132_cov_26.822948:1-1132 [pilon] Processing NODE_14675_length_243_cov_8.762295:1-243 [pilon] NODE_7266_length_456_cov_20.713433:1-456 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 179, Coverage: 29, minDepth: 7 [pilon] Confirmed 356 of 456 bases (78.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7266_length_456_cov_20.713433:1-456 [pilon] Processing NODE_11206_length_276_cov_9.664516:1-276 [pilon] NODE_7065_length_467_cov_8.809249:1-467 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 66, Coverage: 6, minDepth: 5 [pilon] Confirmed 323 of 467 bases (69.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7065_length_467_cov_8.809249:1-467 [pilon] Processing NODE_7846_length_425_cov_10.052632:1-425 [pilon] NODE_12768_length_243_cov_25.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12768_length_243_cov_25.377049:1-243 [pilon] Processing NODE_11321_length_270_cov_27.436242:1-270 [pilon] NODE_7311_length_453_cov_2.066265:1-453 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 31, Coverage: 8, minDepth: 5 [pilon] Confirmed 354 of 453 bases (78.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7311_length_453_cov_2.066265:1-453 [pilon] Processing NODE_7107_length_465_cov_11.787791:1-465 [pilon] NODE_12366_length_243_cov_31.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12366_length_243_cov_31.762295:1-243 [pilon] Processing NODE_6408_length_510_cov_9.976864:1-510 [pilon] NODE_2286_length_1014_cov_14.397536:1-1014 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 328, Coverage: 35, minDepth: 9 [pilon] Confirmed 862 of 1014 bases (85.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2286_length_1014_cov_14.397536:1-1014 [pilon] Processing NODE_6742_length_487_cov_3.560109:1-487 [pilon] NODE_6463_length_506_cov_10.488312:1-506 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 107, Coverage: 13, minDepth: 5 [pilon] Confirmed 396 of 506 bases (78.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6463_length_506_cov_10.488312:1-506 [pilon] Processing NODE_14893_length_243_cov_6.786885:1-243 [pilon] NODE_5385_length_585_cov_24.842672:1-585 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 312, Coverage: 20, minDepth: 5 [pilon] Confirmed 336 of 585 bases (57.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5385_length_585_cov_24.842672:1-585 [pilon] Processing NODE_723_length_1687_cov_13.906769:1-1687 [pilon] NODE_3805_length_740_cov_2.920840:1-740 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 56, Coverage: 10, minDepth: 5 [pilon] Confirmed 490 of 740 bases (66.22%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3805_length_740_cov_2.920840:1-740 [pilon] Processing NODE_13642_length_243_cov_17.098361:1-243 [pilon] NODE_295_length_2245_cov_24.419962:1-2245 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 1322, Coverage: 68, minDepth: 17 [pilon] Confirmed 1886 of 2245 bases (84.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_295_length_2245_cov_24.419962:1-2245 [pilon] Processing NODE_13797_length_243_cov_15.729508:1-243 [pilon] NODE_1110_length_1436_cov_15.076806:1-1436 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 538, Coverage: 31, minDepth: 8 [pilon] Confirmed 1221 of 1436 bases (85.03%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1110_length_1436_cov_15.076806:1-1436 [pilon] Processing NODE_3235_length_827_cov_16.133144:1-827 [pilon] NODE_8158_length_411_cov_0.758621:1-411 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 411 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8158_length_411_cov_0.758621:1-411 [pilon] Processing NODE_3027_length_868_cov_3.377510:1-868 [pilon] NODE_11206_length_276_cov_9.664516:1-276 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 34, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11206_length_276_cov_9.664516:1-276 [pilon] Processing NODE_4610_length_652_cov_1.244821:1-652 [pilon] NODE_1251_length_1364_cov_13.033789:1-1364 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 405, Coverage: 27, minDepth: 7 [pilon] Confirmed 1214 of 1364 bases (89.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1251_length_1364_cov_13.033789:1-1364 [pilon] Processing NODE_13841_length_243_cov_15.352459:1-243 [pilon] NODE_9456_length_348_cov_10.471366:1-348 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 44, Coverage: 4, minDepth: 5 [pilon] Confirmed 151 of 348 bases (43.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9456_length_348_cov_10.471366:1-348 [pilon] Processing NODE_10885_length_288_cov_30.724551:1-288 [pilon] NODE_7846_length_425_cov_10.052632:1-425 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 71, Coverage: 11, minDepth: 5 [pilon] Confirmed 338 of 425 bases (79.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7846_length_425_cov_10.052632:1-425 [pilon] Processing NODE_10435_length_307_cov_8.408602:1-307 [pilon] NODE_7409_length_447_cov_31.730061:1-447 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 268, Coverage: 19, minDepth: 5 [pilon] Confirmed 219 of 447 bases (48.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7409_length_447_cov_31.730061:1-447 [pilon] Processing NODE_5469_length_579_cov_24.932314:1-579 [pilon] NODE_481_length_1929_cov_3.586836:1-1929 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 168, Coverage: 11, minDepth: 5 [pilon] Confirmed 1534 of 1929 bases (79.52%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_481_length_1929_cov_3.586836:1-1929 [pilon] Processing NODE_9525_length_345_cov_14.602679:1-345 [pilon] NODE_15032_length_243_cov_5.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15032_length_243_cov_5.073770:1-243 [pilon] Processing NODE_14743_length_243_cov_8.155738:1-243 [pilon] NODE_1945_length_1099_cov_2.384458:1-1099 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 65, Coverage: 8, minDepth: 5 [pilon] Confirmed 611 of 1099 bases (55.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1945_length_1099_cov_2.384458:1-1099 [pilon] Processing NODE_14243_length_243_cov_12.286885:1-243 [pilon] NODE_7109_length_465_cov_11.273256:1-465 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 96, Coverage: 9, minDepth: 5 [pilon] Confirmed 359 of 465 bases (77.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7109_length_465_cov_11.273256:1-465 [pilon] Processing NODE_2420_length_986_cov_26.252023:1-986 [pilon] NODE_11091_length_279_cov_33.265823:1-279 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 96, Coverage: 7, minDepth: 5 [pilon] Confirmed 153 of 279 bases (54.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11091_length_279_cov_33.265823:1-279 [pilon] Processing NODE_856_length_1594_cov_7.152749:1-1594 [pilon] NODE_4192_length_694_cov_25.202443:1-694 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 353, Coverage: 42, minDepth: 11 [pilon] Confirmed 595 of 694 bases (85.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4192_length_694_cov_25.202443:1-694 [pilon] Processing NODE_7608_length_437_cov_17.151899:1-437 [pilon] NODE_5906_length_547_cov_20.903756:1-547 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 221, Coverage: 41, minDepth: 10 [pilon] Confirmed 463 of 547 bases (84.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5906_length_547_cov_20.903756:1-547 [pilon] Processing NODE_9193_length_357_cov_28.750000:1-357 [pilon] NODE_6742_length_487_cov_3.560109:1-487 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 28, Coverage: 7, minDepth: 5 [pilon] Confirmed 347 of 487 bases (71.25%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6742_length_487_cov_3.560109:1-487 [pilon] Processing NODE_5433_length_582_cov_1.772234:1-582 [pilon] NODE_10067_length_323_cov_7.485149:1-323 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 49, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 323 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10067_length_323_cov_7.485149:1-323 [pilon] Processing NODE_11911_length_249_cov_15.578125:1-249 [pilon] NODE_5774_length_557_cov_31.532110:1-557 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 307, Coverage: 45, minDepth: 11 [pilon] Confirmed 493 of 557 bases (88.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5774_length_557_cov_31.532110:1-557 [pilon] Processing NODE_3065_length_860_cov_7.382950:1-860 [pilon] NODE_2506_length_966_cov_21.675740:1-966 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 450, Coverage: 37, minDepth: 9 [pilon] Confirmed 821 of 966 bases (84.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2506_length_966_cov_21.675740:1-966 [pilon] Processing NODE_12576_length_243_cov_27.868852:1-243 [pilon] NODE_14675_length_243_cov_8.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14675_length_243_cov_8.762295:1-243 [pilon] Processing NODE_5512_length_576_cov_16.039560:1-576 [pilon] NODE_13450_length_243_cov_18.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13450_length_243_cov_18.827869:1-243 [pilon] Processing NODE_9361_length_351_cov_26.313043:1-351 [pilon] NODE_11321_length_270_cov_27.436242:1-270 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 154 of 270 bases (57.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11321_length_270_cov_27.436242:1-270 [pilon] Processing NODE_10068_length_323_cov_4.801980:1-323 [pilon] NODE_7107_length_465_cov_11.787791:1-465 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 93, Coverage: 11, minDepth: 5 [pilon] Confirmed 319 of 465 bases (68.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7107_length_465_cov_11.787791:1-465 [pilon] Processing NODE_13352_length_243_cov_19.827869:1-243 [pilon] NODE_6408_length_510_cov_9.976864:1-510 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 102, Coverage: 15, minDepth: 5 [pilon] Confirmed 324 of 510 bases (63.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6408_length_510_cov_9.976864:1-510 [pilon] Processing NODE_10340_length_312_cov_12.900524:1-312 [pilon] NODE_13642_length_243_cov_17.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13642_length_243_cov_17.098361:1-243 [pilon] Processing NODE_2827_length_905_cov_22.113520:1-905 [pilon] NODE_14893_length_243_cov_6.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14893_length_243_cov_6.786885:1-243 [pilon] Processing NODE_3179_length_835_cov_6.263305:1-835 [pilon] NODE_3235_length_827_cov_16.133144:1-827 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 293, Coverage: 30, minDepth: 8 [pilon] Confirmed 775 of 827 bases (93.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3235_length_827_cov_16.133144:1-827 [pilon] Processing NODE_3777_length_743_cov_44.331190:1-743 [pilon] NODE_13797_length_243_cov_15.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13797_length_243_cov_15.729508:1-243 [pilon] Processing NODE_6922_length_476_cov_16.464789:1-476 [pilon] NODE_723_length_1687_cov_13.906769:1-1687 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 547, Coverage: 33, minDepth: 8 [pilon] Confirmed 1291 of 1687 bases (76.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_723_length_1687_cov_13.906769:1-1687 [pilon] Processing NODE_4249_length_688_cov_2.250441:1-688 [pilon] NODE_7608_length_437_cov_17.151899:1-437 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 121, Coverage: 14, minDepth: 5 [pilon] Confirmed 235 of 437 bases (53.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7608_length_437_cov_17.151899:1-437 [pilon] Processing NODE_7759_length_429_cov_21.561688:1-429 [pilon] NODE_3027_length_868_cov_3.377510:1-868 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 66, Coverage: 10, minDepth: 5 [pilon] Confirmed 625 of 868 bases (72.00%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3027_length_868_cov_3.377510:1-868 [pilon] Processing NODE_124_length_2858_cov_40.941542:1-2858 [pilon] NODE_4610_length_652_cov_1.244821:1-652 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 322 of 652 bases (49.39%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4610_length_652_cov_1.244821:1-652 [pilon] Processing NODE_8862_length_374_cov_8.616601:1-374 [pilon] NODE_10435_length_307_cov_8.408602:1-307 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 307 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10435_length_307_cov_8.408602:1-307 [pilon] Processing NODE_13255_length_243_cov_20.573770:1-243 [pilon] NODE_3065_length_860_cov_7.382950:1-860 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 175, Coverage: 14, minDepth: 5 [pilon] Confirmed 721 of 860 bases (83.84%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3065_length_860_cov_7.382950:1-860 [pilon] Processing NODE_9228_length_357_cov_10.144068:1-357 [pilon] NODE_5433_length_582_cov_1.772234:1-582 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 243 of 582 bases (41.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5433_length_582_cov_1.772234:1-582 [pilon] Processing NODE_12208_length_243_cov_36.459016:1-243 [pilon] NODE_2420_length_986_cov_26.252023:1-986 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 502, Coverage: 40, minDepth: 10 [pilon] Confirmed 754 of 986 bases (76.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2420_length_986_cov_26.252023:1-986 [pilon] Processing NODE_12610_length_243_cov_27.459016:1-243 [pilon] NODE_14243_length_243_cov_12.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14243_length_243_cov_12.286885:1-243 [pilon] Processing NODE_13359_length_243_cov_19.754098:1-243 [pilon] NODE_9525_length_345_cov_14.602679:1-345 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 69, Coverage: 4, minDepth: 5 [pilon] Confirmed 189 of 345 bases (54.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9525_length_345_cov_14.602679:1-345 [pilon] Processing NODE_12837_length_243_cov_24.713115:1-243 [pilon] NODE_10885_length_288_cov_30.724551:1-288 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 109, Coverage: 16, minDepth: 5 [pilon] Confirmed 243 of 288 bases (84.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10885_length_288_cov_30.724551:1-288 [pilon] Processing NODE_7229_length_459_cov_0.772189:1-459 [pilon] NODE_13841_length_243_cov_15.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13841_length_243_cov_15.352459:1-243 [pilon] Processing NODE_9168_length_359_cov_10.764706:1-359 [pilon] NODE_5469_length_579_cov_24.932314:1-579 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 247, Coverage: 44, minDepth: 11 [pilon] Confirmed 477 of 579 bases (82.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5469_length_579_cov_24.932314:1-579 [pilon] Processing NODE_13824_length_243_cov_15.450820:1-243 [pilon] NODE_14743_length_243_cov_8.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14743_length_243_cov_8.155738:1-243 [pilon] Processing NODE_11613_length_259_cov_10.862319:1-259 [pilon] NODE_856_length_1594_cov_7.152749:1-1594 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 273, Coverage: 20, minDepth: 5 [pilon] Confirmed 1137 of 1594 bases (71.33%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_856_length_1594_cov_7.152749:1-1594 [pilon] Processing NODE_11787_length_253_cov_19.454545:1-253 [pilon] NODE_12576_length_243_cov_27.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12576_length_243_cov_27.868852:1-243 [pilon] Processing NODE_13201_length_243_cov_21.073770:1-243 [pilon] NODE_9193_length_357_cov_28.750000:1-357 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 119, Coverage: 17, minDepth: 5 [pilon] Confirmed 239 of 357 bases (66.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9193_length_357_cov_28.750000:1-357 [pilon] Processing NODE_13937_length_243_cov_14.639344:1-243 [pilon] NODE_5512_length_576_cov_16.039560:1-576 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 162, Coverage: 18, minDepth: 5 [pilon] Confirmed 399 of 576 bases (69.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5512_length_576_cov_16.039560:1-576 [pilon] Processing NODE_2833_length_905_cov_2.613520:1-905 [pilon] NODE_11911_length_249_cov_15.578125:1-249 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 55, Coverage: 4, minDepth: 5 [pilon] Confirmed 105 of 249 bases (42.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11911_length_249_cov_15.578125:1-249 [pilon] Processing NODE_12138_length_243_cov_40.500000:1-243 [pilon] NODE_9361_length_351_cov_26.313043:1-351 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 144, Coverage: 23, minDepth: 6 [pilon] Confirmed 302 of 351 bases (86.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9361_length_351_cov_26.313043:1-351 [pilon] Processing NODE_2709_length_927_cov_20.130273:1-927 [pilon] NODE_13352_length_243_cov_19.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13352_length_243_cov_19.827869:1-243 [pilon] Processing NODE_3958_length_720_cov_4.662771:1-720 [pilon] NODE_10340_length_312_cov_12.900524:1-312 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 62, Coverage: 8, minDepth: 5 [pilon] Confirmed 188 of 312 bases (60.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10340_length_312_cov_12.900524:1-312 [pilon] Processing NODE_13716_length_243_cov_16.286885:1-243 [pilon] NODE_3179_length_835_cov_6.263305:1-835 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 151, Coverage: 15, minDepth: 5 [pilon] Confirmed 674 of 835 bases (80.72%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3179_length_835_cov_6.263305:1-835 [pilon] Processing NODE_12621_length_243_cov_27.286885:1-243 [pilon] NODE_10068_length_323_cov_4.801980:1-323 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 323 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10068_length_323_cov_4.801980:1-323 [pilon] Processing NODE_14613_length_243_cov_9.303279:1-243 [pilon] NODE_4249_length_688_cov_2.250441:1-688 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 363 of 688 bases (52.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4249_length_688_cov_2.250441:1-688 [pilon] Processing NODE_8167_length_410_cov_21.854671:1-410 [pilon] NODE_2827_length_905_cov_22.113520:1-905 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 424, Coverage: 26, minDepth: 7 [pilon] Confirmed 798 of 905 bases (88.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2827_length_905_cov_22.113520:1-905 [pilon] Processing NODE_15157_length_186_cov_13.153846:1-186 [pilon] NODE_7759_length_429_cov_21.561688:1-429 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 137, Coverage: 16, minDepth: 5 [pilon] Confirmed 360 of 429 bases (83.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7759_length_429_cov_21.561688:1-429 [pilon] Processing NODE_729_length_1685_cov_20.274936:1-1685 [pilon] NODE_3777_length_743_cov_44.331190:1-743 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 619, Coverage: 84, minDepth: 21 [pilon] Confirmed 661 of 743 bases (88.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3777_length_743_cov_44.331190:1-743 [pilon] Processing NODE_13972_length_243_cov_14.303279:1-243 [pilon] NODE_6922_length_476_cov_16.464789:1-476 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 159, Coverage: 25, minDepth: 6 [pilon] Confirmed 451 of 476 bases (94.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6922_length_476_cov_16.464789:1-476 [pilon] Processing NODE_14480_length_243_cov_10.409836:1-243 [pilon] NODE_8862_length_374_cov_8.616601:1-374 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 67, Coverage: 5, minDepth: 5 [pilon] Confirmed 250 of 374 bases (66.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8862_length_374_cov_8.616601:1-374 [pilon] Processing NODE_104_length_2978_cov_21.169058:1-2978 [pilon] NODE_12208_length_243_cov_36.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12208_length_243_cov_36.459016:1-243 [pilon] Processing NODE_2761_length_917_cov_2.219849:1-917 [pilon] NODE_13255_length_243_cov_20.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13255_length_243_cov_20.573770:1-243 [pilon] Processing NODE_14134_length_243_cov_13.245902:1-243 [pilon] NODE_9168_length_359_cov_10.764706:1-359 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 57, Coverage: 8, minDepth: 5 [pilon] Confirmed 204 of 359 bases (56.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9168_length_359_cov_10.764706:1-359 [pilon] Processing NODE_14169_length_243_cov_12.909836:1-243 [pilon] NODE_13359_length_243_cov_19.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13359_length_243_cov_19.754098:1-243 [pilon] Processing NODE_13713_length_243_cov_16.311475:1-243 [pilon] NODE_9228_length_357_cov_10.144068:1-357 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 62, Coverage: 7, minDepth: 5 [pilon] Confirmed 190 of 357 bases (53.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9228_length_357_cov_10.144068:1-357 [pilon] Processing NODE_3937_length_722_cov_45.638935:1-722 [pilon] NODE_124_length_2858_cov_40.941542:1-2858 log: [pilon] frags shovill.bam: coverage 113 [pilon] Total Reads: 2604, Coverage: 113, minDepth: 28 [pilon] Confirmed 2638 of 2858 bases (92.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_124_length_2858_cov_40.941542:1-2858 [pilon] Processing NODE_568_length_1837_cov_18.043124:1-1837 [pilon] NODE_7229_length_459_cov_0.772189:1-459 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 163 of 459 bases (35.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7229_length_459_cov_0.772189:1-459 [pilon] Processing NODE_5888_length_549_cov_2.848131:1-549 [pilon] NODE_12610_length_243_cov_27.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12610_length_243_cov_27.459016:1-243 [pilon] Processing NODE_13722_length_243_cov_16.245902:1-243 [pilon] NODE_13824_length_243_cov_15.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13824_length_243_cov_15.450820:1-243 [pilon] Processing NODE_8507_length_393_cov_26.316176:1-393 [pilon] NODE_11613_length_259_cov_10.862319:1-259 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 259 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11613_length_259_cov_10.862319:1-259 [pilon] Processing NODE_9402_length_350_cov_25.017467:1-350 [pilon] NODE_2833_length_905_cov_2.613520:1-905 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 58, Coverage: 8, minDepth: 5 [pilon] Confirmed 627 of 905 bases (69.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2833_length_905_cov_2.613520:1-905 [pilon] Processing NODE_14800_length_243_cov_7.696721:1-243 [pilon] NODE_11787_length_253_cov_19.454545:1-253 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 55, Coverage: 4, minDepth: 5 [pilon] Confirmed 103 of 253 bases (40.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11787_length_253_cov_19.454545:1-253 [pilon] Processing NODE_9331_length_353_cov_22.525862:1-353 [pilon] NODE_13201_length_243_cov_21.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13201_length_243_cov_21.073770:1-243 [pilon] Processing NODE_10137_length_320_cov_35.608040:1-320 [pilon] NODE_12138_length_243_cov_40.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 101, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12138_length_243_cov_40.500000:1-243 [pilon] Processing NODE_11677_length_258_cov_7.218978:1-258 [pilon] NODE_12837_length_243_cov_24.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12837_length_243_cov_24.713115:1-243 [pilon] Processing NODE_14889_length_243_cov_6.803279:1-243 [pilon] NODE_14613_length_243_cov_9.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14613_length_243_cov_9.303279:1-243 [pilon] Processing NODE_10911_length_288_cov_16.275449:1-288 [pilon] NODE_2709_length_927_cov_20.130273:1-927 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 366, Coverage: 28, minDepth: 7 [pilon] Confirmed 744 of 927 bases (80.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2709_length_927_cov_20.130273:1-927 [pilon] Processing NODE_14001_length_243_cov_14.172131:1-243 [pilon] NODE_12621_length_243_cov_27.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 73, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12621_length_243_cov_27.286885:1-243 [pilon] Processing NODE_14294_length_243_cov_11.885246:1-243 [pilon] NODE_13937_length_243_cov_14.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13937_length_243_cov_14.639344:1-243 [pilon] Processing NODE_12494_length_243_cov_29.188525:1-243 [pilon] NODE_8167_length_410_cov_21.854671:1-410 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 141, Coverage: 14, minDepth: 5 [pilon] Confirmed 242 of 410 bases (59.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8167_length_410_cov_21.854671:1-410 [pilon] Processing NODE_11318_length_270_cov_30.288591:1-270 [pilon] NODE_3958_length_720_cov_4.662771:1-720 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 64, Coverage: 12, minDepth: 5 [pilon] Confirmed 539 of 720 bases (74.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3958_length_720_cov_4.662771:1-720 [pilon] Processing NODE_223_length_2426_cov_1.926247:1-2426 [pilon] NODE_13972_length_243_cov_14.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13972_length_243_cov_14.303279:1-243 [pilon] Processing NODE_13049_length_243_cov_22.434426:1-243 [pilon] NODE_729_length_1685_cov_20.274936:1-1685 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 735, Coverage: 48, minDepth: 12 [pilon] Confirmed 1316 of 1685 bases (78.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_729_length_1685_cov_20.274936:1-1685 [pilon] Processing NODE_2857_length_900_cov_19.525032:1-900 [pilon] NODE_13716_length_243_cov_16.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13716_length_243_cov_16.286885:1-243 [pilon] Processing NODE_4840_length_631_cov_29.123529:1-631 [pilon] NODE_14480_length_243_cov_10.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14480_length_243_cov_10.409836:1-243 [pilon] Processing NODE_4236_length_689_cov_6.181338:1-689 [pilon] NODE_15157_length_186_cov_13.153846:1-186 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 186 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15157_length_186_cov_13.153846:1-186 [pilon] Processing NODE_6243_length_521_cov_37.520000:1-521 [pilon] NODE_13722_length_243_cov_16.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13722_length_243_cov_16.245902:1-243 [pilon] Processing NODE_14958_length_243_cov_6.024590:1-243 [pilon] NODE_14169_length_243_cov_12.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14169_length_243_cov_12.909836:1-243 [pilon] Processing NODE_14546_length_243_cov_9.918033:1-243 [pilon] NODE_104_length_2978_cov_21.169058:1-2978 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 1473, Coverage: 58, minDepth: 15 [pilon] Confirmed 2827 of 2978 bases (94.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_104_length_2978_cov_21.169058:1-2978 [pilon] Processing NODE_12451_length_243_cov_29.893443:1-243 [pilon] NODE_14134_length_243_cov_13.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14134_length_243_cov_13.245902:1-243 [pilon] Processing NODE_6000_length_540_cov_43.656325:1-540 [pilon] NODE_13713_length_243_cov_16.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13713_length_243_cov_16.311475:1-243 [pilon] Processing NODE_2287_length_1014_cov_11.351624:1-1014 [pilon] NODE_2761_length_917_cov_2.219849:1-917 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 60, Coverage: 8, minDepth: 5 [pilon] Confirmed 699 of 917 bases (76.23%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2761_length_917_cov_2.219849:1-917 [pilon] Processing NODE_2437_length_980_cov_31.827707:1-980 [pilon] NODE_12494_length_243_cov_29.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12494_length_243_cov_29.188525:1-243 [pilon] Processing NODE_3562_length_775_cov_26.759939:1-775 [pilon] NODE_14800_length_243_cov_7.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14800_length_243_cov_7.696721:1-243 [pilon] NODE_5888_length_549_cov_2.848131:1-549 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 36, Coverage: 9, minDepth: 5 [pilon] Confirmed 368 of 549 bases (67.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_15115_length_213_cov_21.358696:1-213 [pilon] Finished processing NODE_5888_length_549_cov_2.848131:1-549 [pilon] Processing NODE_2987_length_875_cov_21.992042:1-875 [pilon] NODE_8507_length_393_cov_26.316176:1-393 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 173, Coverage: 11, minDepth: 5 [pilon] Confirmed 240 of 393 bases (61.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8507_length_393_cov_26.316176:1-393 [pilon] Processing NODE_5260_length_596_cov_3.524211:1-596 [pilon] NODE_3937_length_722_cov_45.638935:1-722 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 654, Coverage: 84, minDepth: 21 [pilon] Confirmed 658 of 722 bases (91.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3937_length_722_cov_45.638935:1-722 [pilon] Processing NODE_9781_length_335_cov_23.630841:1-335 [pilon] NODE_13049_length_243_cov_22.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13049_length_243_cov_22.434426:1-243 [pilon] Processing NODE_9909_length_330_cov_10.755981:1-330 [pilon] NODE_10137_length_320_cov_35.608040:1-320 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 158, Coverage: 22, minDepth: 6 [pilon] Confirmed 294 of 320 bases (91.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10137_length_320_cov_35.608040:1-320 [pilon] Processing NODE_4582_length_655_cov_2.968165:1-655 [pilon] NODE_9331_length_353_cov_22.525862:1-353 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 143, Coverage: 25, minDepth: 6 [pilon] Confirmed 322 of 353 bases (91.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9331_length_353_cov_22.525862:1-353 [pilon] NODE_9402_length_350_cov_25.017467:1-350 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 147, Coverage: 19, minDepth: 5 [pilon] Confirmed 284 of 350 bases (81.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_13519_length_243_cov_18.172131:1-243 [pilon] Finished processing NODE_9402_length_350_cov_25.017467:1-350 [pilon] Processing NODE_5951_length_544_cov_30.962175:1-544 [pilon] NODE_568_length_1837_cov_18.043124:1-1837 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 712, Coverage: 39, minDepth: 10 [pilon] Confirmed 1644 of 1837 bases (89.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_568_length_1837_cov_18.043124:1-1837 [pilon] Processing NODE_9900_length_330_cov_16.775120:1-330 [pilon] NODE_11677_length_258_cov_7.218978:1-258 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11677_length_258_cov_7.218978:1-258 [pilon] Processing NODE_3331_length_810_cov_8.510885:1-810 [pilon] NODE_14889_length_243_cov_6.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14889_length_243_cov_6.803279:1-243 [pilon] Processing NODE_1824_length_1137_cov_15.626969:1-1137 [pilon] NODE_10911_length_288_cov_16.275449:1-288 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 64, Coverage: 4, minDepth: 5 [pilon] Confirmed 128 of 288 bases (44.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10911_length_288_cov_16.275449:1-288 [pilon] Processing NODE_2015_length_1082_cov_49.887617:1-1082 [pilon] NODE_14294_length_243_cov_11.885246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14294_length_243_cov_11.885246:1-243 [pilon] Processing NODE_7506_length_443_cov_1.534161:1-443 [pilon] NODE_11318_length_270_cov_30.288591:1-270 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 99, Coverage: 2, minDepth: 5 [pilon] Confirmed 46 of 270 bases (17.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11318_length_270_cov_30.288591:1-270 [pilon] Processing NODE_1124_length_1428_cov_11.056618:1-1428 [pilon] NODE_223_length_2426_cov_1.926247:1-2426 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 138, Coverage: 7, minDepth: 5 [pilon] Confirmed 1666 of 2426 bases (68.67%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_223_length_2426_cov_1.926247:1-2426 [pilon] Processing NODE_14791_length_243_cov_7.778689:1-243 [pilon] NODE_4840_length_631_cov_29.123529:1-631 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 346, Coverage: 40, minDepth: 10 [pilon] Confirmed 486 of 631 bases (77.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4840_length_631_cov_29.123529:1-631 [pilon] Processing NODE_3892_length_729_cov_2.993421:1-729 [pilon] NODE_14001_length_243_cov_14.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14001_length_243_cov_14.172131:1-243 [pilon] Processing NODE_12420_length_243_cov_30.557377:1-243 [pilon] NODE_12451_length_243_cov_29.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12451_length_243_cov_29.893443:1-243 [pilon] Processing NODE_2945_length_882_cov_29.319317:1-882 [pilon] NODE_14958_length_243_cov_6.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14958_length_243_cov_6.024590:1-243 [pilon] Processing NODE_11327_length_270_cov_22.093960:1-270 [pilon] NODE_14546_length_243_cov_9.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14546_length_243_cov_9.918033:1-243 [pilon] Processing NODE_3372_length_802_cov_3.513950:1-802 [pilon] NODE_2857_length_900_cov_19.525032:1-900 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 357, Coverage: 32, minDepth: 8 [pilon] Confirmed 691 of 900 bases (76.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2857_length_900_cov_19.525032:1-900 [pilon] Processing NODE_6752_length_486_cov_19.742466:1-486 [pilon] NODE_4236_length_689_cov_6.181338:1-689 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 90, Coverage: 4, minDepth: 5 [pilon] Confirmed 223 of 689 bases (32.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4236_length_689_cov_6.181338:1-689 [pilon] Processing NODE_880_length_1575_cov_22.387208:1-1575 [pilon] NODE_3562_length_775_cov_26.759939:1-775 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 417, Coverage: 60, minDepth: 15 [pilon] Confirmed 557 of 775 bases (71.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3562_length_775_cov_26.759939:1-775 [pilon] Processing NODE_13020_length_243_cov_22.721311:1-243 [pilon] NODE_6243_length_521_cov_37.520000:1-521 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 361, Coverage: 66, minDepth: 17 [pilon] Confirmed 419 of 521 bases (80.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6243_length_521_cov_37.520000:1-521 [pilon] Processing NODE_11824_length_252_cov_16.122137:1-252 [pilon] NODE_3331_length_810_cov_8.510885:1-810 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 146, Coverage: 12, minDepth: 5 [pilon] Confirmed 686 of 810 bases (84.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3331_length_810_cov_8.510885:1-810 [pilon] Processing NODE_14461_length_243_cov_10.606557:1-243 [pilon] NODE_2287_length_1014_cov_11.351624:1-1014 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 346, Coverage: 33, minDepth: 8 [pilon] Confirmed 749 of 1014 bases (73.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2287_length_1014_cov_11.351624:1-1014 [pilon] Processing NODE_9544_length_344_cov_49.614350:1-344 [pilon] NODE_6000_length_540_cov_43.656325:1-540 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 435, Coverage: 71, minDepth: 18 [pilon] Confirmed 467 of 540 bases (86.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6000_length_540_cov_43.656325:1-540 [pilon] Processing NODE_7538_length_441_cov_21.034375:1-441 [pilon] NODE_2437_length_980_cov_31.827707:1-980 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 619, Coverage: 59, minDepth: 15 [pilon] Confirmed 789 of 980 bases (80.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2437_length_980_cov_31.827707:1-980 [pilon] Processing NODE_4872_length_629_cov_10.655512:1-629 [pilon] NODE_13519_length_243_cov_18.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13519_length_243_cov_18.172131:1-243 [pilon] Processing NODE_4497_length_662_cov_5.589649:1-662 [pilon] NODE_15115_length_213_cov_21.358696:1-213 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 47, Coverage: 4, minDepth: 5 [pilon] Confirmed 87 of 213 bases (40.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_9909_length_330_cov_10.755981:1-330 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 50, Coverage: 2, minDepth: 5 [pilon] Confirmed 110 of 330 bases (33.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15115_length_213_cov_21.358696:1-213 [pilon] Finished processing NODE_9909_length_330_cov_10.755981:1-330 [pilon] Processing NODE_7040_length_468_cov_24.933718:1-468 [pilon] Processing NODE_4679_length_645_cov_17.736641:1-645 [pilon] NODE_4582_length_655_cov_2.968165:1-655 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 53, Coverage: 10, minDepth: 5 [pilon] Confirmed 539 of 655 bases (82.29%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4582_length_655_cov_2.968165:1-655 [pilon] Processing NODE_3930_length_724_cov_1.276949:1-724 [pilon] NODE_5260_length_596_cov_3.524211:1-596 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 38, Coverage: 8, minDepth: 5 [pilon] Confirmed 407 of 596 bases (68.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5260_length_596_cov_3.524211:1-596 [pilon] Processing NODE_476_length_1941_cov_22.507692:1-1941 [pilon] NODE_9781_length_335_cov_23.630841:1-335 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 104, Coverage: 19, minDepth: 5 [pilon] Confirmed 265 of 335 bases (79.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9781_length_335_cov_23.630841:1-335 [pilon] Processing NODE_2032_length_1078_cov_3.575758:1-1078 [pilon] NODE_2987_length_875_cov_21.992042:1-875 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 378, Coverage: 38, minDepth: 10 [pilon] Confirmed 555 of 875 bases (63.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2987_length_875_cov_21.992042:1-875 [pilon] Processing NODE_11493_length_264_cov_10.090909:1-264 [pilon] NODE_9900_length_330_cov_16.775120:1-330 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 72, Coverage: 7, minDepth: 5 [pilon] Confirmed 198 of 330 bases (60.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9900_length_330_cov_16.775120:1-330 [pilon] Processing NODE_1048_length_1470_cov_4.517420:1-1470 [pilon] NODE_3892_length_729_cov_2.993421:1-729 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 48, Coverage: 8, minDepth: 5 [pilon] Confirmed 360 of 729 bases (49.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3892_length_729_cov_2.993421:1-729 [pilon] Processing NODE_768_length_1643_cov_19.911301:1-1643 [pilon] NODE_5951_length_544_cov_30.962175:1-544 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 309, Coverage: 42, minDepth: 11 [pilon] Confirmed 420 of 544 bases (77.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5951_length_544_cov_30.962175:1-544 [pilon] Processing NODE_2348_length_1001_cov_15.206818:1-1001 [pilon] NODE_2945_length_882_cov_29.319317:1-882 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 622, Coverage: 70, minDepth: 18 [pilon] Confirmed 749 of 882 bases (84.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2945_length_882_cov_29.319317:1-882 [pilon] Processing NODE_3751_length_747_cov_17.006390:1-747 [pilon] NODE_1824_length_1137_cov_15.626969:1-1137 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 431, Coverage: 34, minDepth: 9 [pilon] Confirmed 1083 of 1137 bases (95.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1824_length_1137_cov_15.626969:1-1137 [pilon] Processing NODE_9680_length_339_cov_12.302752:1-339 [pilon] NODE_1124_length_1428_cov_11.056618:1-1428 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 381, Coverage: 25, minDepth: 6 [pilon] Confirmed 1112 of 1428 bases (77.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1124_length_1428_cov_11.056618:1-1428 [pilon] Processing NODE_1327_length_1330_cov_7.022333:1-1330 [pilon] NODE_7506_length_443_cov_1.534161:1-443 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 274 of 443 bases (61.85%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7506_length_443_cov_1.534161:1-443 [pilon] Processing NODE_3107_length_850_cov_37.316872:1-850 [pilon] NODE_2015_length_1082_cov_49.887617:1-1082 log: [pilon] frags shovill.bam: coverage 127 [pilon] Total Reads: 1226, Coverage: 127, minDepth: 32 [pilon] Confirmed 979 of 1082 bases (90.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2015_length_1082_cov_49.887617:1-1082 [pilon] Processing NODE_9920_length_329_cov_17.528846:1-329 [pilon] NODE_14791_length_243_cov_7.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14791_length_243_cov_7.778689:1-243 [pilon] Processing NODE_11046_length_282_cov_9.273292:1-282 [pilon] NODE_13020_length_243_cov_22.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13020_length_243_cov_22.721311:1-243 [pilon] Processing NODE_14765_length_243_cov_7.991803:1-243 [pilon] NODE_11327_length_270_cov_22.093960:1-270 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 69, Coverage: 5, minDepth: 5 [pilon] Confirmed 133 of 270 bases (49.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11327_length_270_cov_22.093960:1-270 [pilon] Processing NODE_2136_length_1050_cov_0.555436:1-1050 [pilon] NODE_3372_length_802_cov_3.513950:1-802 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 61, Coverage: 10, minDepth: 5 [pilon] Confirmed 595 of 802 bases (74.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3372_length_802_cov_3.513950:1-802 [pilon] Processing NODE_10136_length_320_cov_36.979899:1-320 [pilon] NODE_14461_length_243_cov_10.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14461_length_243_cov_10.606557:1-243 [pilon] Processing NODE_2462_length_975_cov_12.964871:1-975 [pilon] NODE_12420_length_243_cov_30.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12420_length_243_cov_30.557377:1-243 [pilon] Processing NODE_6510_length_503_cov_11.500000:1-503 [pilon] NODE_6752_length_486_cov_19.742466:1-486 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 174, Coverage: 18, minDepth: 5 [pilon] Confirmed 321 of 486 bases (66.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6752_length_486_cov_19.742466:1-486 [pilon] Processing NODE_9841_length_333_cov_10.179245:1-333 [pilon] NODE_3930_length_724_cov_1.276949:1-724 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 33, Coverage: 6, minDepth: 5 [pilon] Confirmed 487 of 724 bases (67.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3930_length_724_cov_1.276949:1-724 [pilon] Processing NODE_12053_length_245_cov_27.588710:1-245 [pilon] NODE_880_length_1575_cov_22.387208:1-1575 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 809, Coverage: 55, minDepth: 14 [pilon] Confirmed 1257 of 1575 bases (79.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_880_length_1575_cov_22.387208:1-1575 [pilon] Processing NODE_2168_length_1041_cov_14.154348:1-1041 [pilon] NODE_11824_length_252_cov_16.122137:1-252 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 45, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11824_length_252_cov_16.122137:1-252 [pilon] Processing NODE_4066_length_709_cov_1.916667:1-709 [pilon] NODE_4872_length_629_cov_10.655512:1-629 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 135, Coverage: 17, minDepth: 5 [pilon] Confirmed 531 of 629 bases (84.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4872_length_629_cov_10.655512:1-629 [pilon] Processing NODE_6588_length_498_cov_1.753316:1-498 [pilon] NODE_9544_length_344_cov_49.614350:1-344 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 239, Coverage: 42, minDepth: 11 [pilon] Confirmed 304 of 344 bases (88.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9544_length_344_cov_49.614350:1-344 [pilon] Processing NODE_11985_length_246_cov_24.984000:1-246 [pilon] NODE_768_length_1643_cov_19.911301:1-1643 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 743, Coverage: 52, minDepth: 13 [pilon] Confirmed 1391 of 1643 bases (84.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_768_length_1643_cov_19.911301:1-1643 [pilon] Processing NODE_14470_length_243_cov_10.500000:1-243 [pilon] NODE_7538_length_441_cov_21.034375:1-441 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 199, Coverage: 11, minDepth: 5 [pilon] Confirmed 184 of 441 bases (41.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7538_length_441_cov_21.034375:1-441 [pilon] Processing NODE_13784_length_243_cov_15.803279:1-243 [pilon] NODE_4497_length_662_cov_5.589649:1-662 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 75, Coverage: 14, minDepth: 5 [pilon] Confirmed 529 of 662 bases (79.91%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4497_length_662_cov_5.589649:1-662 [pilon] Processing NODE_11521_length_263_cov_14.429577:1-263 [pilon] NODE_3751_length_747_cov_17.006390:1-747 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 252, Coverage: 25, minDepth: 6 [pilon] Confirmed 528 of 747 bases (70.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3751_length_747_cov_17.006390:1-747 [pilon] Processing NODE_3472_length_789_cov_0.913174:1-789 [pilon] NODE_4679_length_645_cov_17.736641:1-645 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 232, Coverage: 22, minDepth: 6 [pilon] Confirmed 381 of 645 bases (59.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4679_length_645_cov_17.736641:1-645 [pilon] Processing NODE_12844_length_243_cov_24.557377:1-243 [pilon] NODE_11493_length_264_cov_10.090909:1-264 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 114 of 264 bases (43.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11493_length_264_cov_10.090909:1-264 [pilon] Processing NODE_7076_length_466_cov_31.768116:1-466 [pilon] NODE_7040_length_468_cov_24.933718:1-468 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 170, Coverage: 22, minDepth: 6 [pilon] Confirmed 316 of 468 bases (67.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7040_length_468_cov_24.933718:1-468 [pilon] Processing NODE_13536_length_243_cov_18.016393:1-243 [pilon] NODE_2032_length_1078_cov_3.575758:1-1078 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 81, Coverage: 10, minDepth: 5 [pilon] Confirmed 865 of 1078 bases (80.24%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2032_length_1078_cov_3.575758:1-1078 [pilon] Processing NODE_722_length_1687_cov_22.678161:1-1687 [pilon] NODE_1048_length_1470_cov_4.517420:1-1470 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 211, Coverage: 12, minDepth: 5 [pilon] Confirmed 1242 of 1470 bases (84.49%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1048_length_1470_cov_4.517420:1-1470 [pilon] Processing NODE_10779_length_294_cov_17.260116:1-294 [pilon] NODE_14765_length_243_cov_7.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14765_length_243_cov_7.991803:1-243 [pilon] Processing NODE_4146_length_699_cov_11.807958:1-699 [pilon] NODE_2462_length_975_cov_12.964871:1-975 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 308, Coverage: 19, minDepth: 5 [pilon] Confirmed 790 of 975 bases (81.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2462_length_975_cov_12.964871:1-975 [pilon] Processing NODE_10479_length_306_cov_8.172973:1-306 [pilon] NODE_2348_length_1001_cov_15.206818:1-1001 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 371, Coverage: 31, minDepth: 8 [pilon] Confirmed 769 of 1001 bases (76.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2348_length_1001_cov_15.206818:1-1001 [pilon] Processing NODE_2876_length_898_cov_19.723295:1-898 [pilon] NODE_476_length_1941_cov_22.507692:1-1941 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 1031, Coverage: 58, minDepth: 15 [pilon] Confirmed 1761 of 1941 bases (90.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_476_length_1941_cov_22.507692:1-1941 [pilon] Processing NODE_15231_length_140_cov_22.105263:1-140 [pilon] NODE_1327_length_1330_cov_7.022333:1-1330 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 223, Coverage: 13, minDepth: 5 [pilon] Confirmed 1135 of 1330 bases (85.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1327_length_1330_cov_7.022333:1-1330 [pilon] Processing NODE_6297_length_518_cov_17.453401:1-518 [pilon] NODE_9680_length_339_cov_12.302752:1-339 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 65, Coverage: 6, minDepth: 5 [pilon] Confirmed 198 of 339 bases (58.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9680_length_339_cov_12.302752:1-339 [pilon] Processing NODE_283_length_2272_cov_18.746629:1-2272 [pilon] NODE_11046_length_282_cov_9.273292:1-282 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 34, Coverage: 4, minDepth: 5 [pilon] Confirmed 127 of 282 bases (45.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11046_length_282_cov_9.273292:1-282 [pilon] Processing NODE_15014_length_243_cov_5.262295:1-243 [pilon] NODE_12053_length_245_cov_27.588710:1-245 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 87, Coverage: 6, minDepth: 5 [pilon] Confirmed 141 of 245 bases (57.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12053_length_245_cov_27.588710:1-245 [pilon] Processing NODE_7721_length_431_cov_51.551613:1-431 [pilon] NODE_9920_length_329_cov_17.528846:1-329 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 84, Coverage: 12, minDepth: 5 [pilon] Confirmed 278 of 329 bases (84.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9920_length_329_cov_17.528846:1-329 [pilon] Processing NODE_10134_length_320_cov_41.894472:1-320 [pilon] NODE_3107_length_850_cov_37.316872:1-850 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 627, Coverage: 78, minDepth: 20 [pilon] Confirmed 753 of 850 bases (88.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3107_length_850_cov_37.316872:1-850 [pilon] Processing NODE_256_length_2315_cov_19.724248:1-2315 [pilon] NODE_10136_length_320_cov_36.979899:1-320 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 166, Coverage: 5, minDepth: 5 [pilon] Confirmed 154 of 320 bases (48.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10136_length_320_cov_36.979899:1-320 [pilon] Processing NODE_7766_length_429_cov_13.152597:1-429 [pilon] NODE_2136_length_1050_cov_0.555436:1-1050 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 16, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 1050 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2136_length_1050_cov_0.555436:1-1050 [pilon] Processing NODE_9487_length_346_cov_13.173333:1-346 [pilon] NODE_6510_length_503_cov_11.500000:1-503 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 164, Coverage: 24, minDepth: 6 [pilon] Confirmed 419 of 503 bases (83.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6510_length_503_cov_11.500000:1-503 [pilon] Processing NODE_11197_length_276_cov_13.225806:1-276 [pilon] NODE_14470_length_243_cov_10.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14470_length_243_cov_10.500000:1-243 [pilon] Processing NODE_5295_length_593_cov_2.105932:1-593 [pilon] NODE_3472_length_789_cov_0.913174:1-789 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 203 of 789 bases (25.73%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3472_length_789_cov_0.913174:1-789 [pilon] Processing NODE_4624_length_650_cov_6.841210:1-650 [pilon] NODE_9841_length_333_cov_10.179245:1-333 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 55, Coverage: 4, minDepth: 5 [pilon] Confirmed 137 of 333 bases (41.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9841_length_333_cov_10.179245:1-333 [pilon] Processing NODE_10679_length_299_cov_10.932584:1-299 [pilon] NODE_6588_length_498_cov_1.753316:1-498 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 19, Coverage: 4, minDepth: 5 [pilon] Confirmed 230 of 498 bases (46.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6588_length_498_cov_1.753316:1-498 [pilon] Processing NODE_3039_length_866_cov_17.154362:1-866 [pilon] NODE_4066_length_709_cov_1.916667:1-709 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 399 of 709 bases (56.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4066_length_709_cov_1.916667:1-709 [pilon] Processing NODE_5566_length_573_cov_12.276549:1-573 [pilon] NODE_10479_length_306_cov_8.172973:1-306 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 45, Coverage: 4, minDepth: 5 [pilon] Confirmed 149 of 306 bases (48.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10479_length_306_cov_8.172973:1-306 [pilon] Processing NODE_5540_length_574_cov_24.428256:1-574 [pilon] NODE_4146_length_699_cov_11.807958:1-699 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 170, Coverage: 32, minDepth: 8 [pilon] Confirmed 535 of 699 bases (76.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4146_length_699_cov_11.807958:1-699 [pilon] Processing NODE_7670_length_434_cov_21.581470:1-434 [pilon] NODE_2168_length_1041_cov_14.154348:1-1041 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 317, Coverage: 31, minDepth: 8 [pilon] Confirmed 869 of 1041 bases (83.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2168_length_1041_cov_14.154348:1-1041 [pilon] Processing NODE_582_length_1828_cov_13.943175:1-1828 [pilon] NODE_13784_length_243_cov_15.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13784_length_243_cov_15.803279:1-243 [pilon] Processing NODE_2849_length_902_cov_30.370038:1-902 [pilon] NODE_11985_length_246_cov_24.984000:1-246 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 76, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11985_length_246_cov_24.984000:1-246 [pilon] Processing NODE_5878_length_549_cov_19.205607:1-549 [pilon] NODE_11521_length_263_cov_14.429577:1-263 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 159 of 263 bases (60.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11521_length_263_cov_14.429577:1-263 [pilon] Processing NODE_10591_length_301_cov_24.500000:1-301 [pilon] NODE_10779_length_294_cov_17.260116:1-294 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 70, Coverage: 6, minDepth: 5 [pilon] Confirmed 191 of 294 bases (64.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10779_length_294_cov_17.260116:1-294 [pilon] Processing NODE_13027_length_243_cov_22.647541:1-243 [pilon] NODE_12844_length_243_cov_24.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12844_length_243_cov_24.557377:1-243 [pilon] Processing NODE_8587_length_389_cov_15.981343:1-389 [pilon] NODE_7076_length_466_cov_31.768116:1-466 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 239, Coverage: 36, minDepth: 9 [pilon] Confirmed 394 of 466 bases (84.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7076_length_466_cov_31.768116:1-466 [pilon] Processing NODE_14718_length_243_cov_8.442623:1-243 [pilon] NODE_13536_length_243_cov_18.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13536_length_243_cov_18.016393:1-243 [pilon] Processing NODE_9882_length_330_cov_27.861244:1-330 [pilon] NODE_7721_length_431_cov_51.551613:1-431 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 347, Coverage: 69, minDepth: 17 [pilon] Confirmed 375 of 431 bases (87.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7721_length_431_cov_51.551613:1-431 [pilon] Processing NODE_13881_length_243_cov_15.032787:1-243 [pilon] NODE_15231_length_140_cov_22.105263:1-140 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 140 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15231_length_140_cov_22.105263:1-140 [pilon] Processing NODE_3045_length_864_cov_19.449529:1-864 [pilon] NODE_2876_length_898_cov_19.723295:1-898 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 366, Coverage: 46, minDepth: 12 [pilon] Confirmed 574 of 898 bases (63.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2876_length_898_cov_19.723295:1-898 [pilon] Processing NODE_1160_length_1414_cov_14.594741:1-1414 [pilon] NODE_6297_length_518_cov_17.453401:1-518 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 160, Coverage: 29, minDepth: 7 [pilon] Confirmed 453 of 518 bases (87.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6297_length_518_cov_17.453401:1-518 [pilon] Processing NODE_11528_length_263_cov_9.042254:1-263 [pilon] NODE_722_length_1687_cov_22.678161:1-1687 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 870, Coverage: 50, minDepth: 13 [pilon] Confirmed 1391 of 1687 bases (82.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_722_length_1687_cov_22.678161:1-1687 [pilon] Processing NODE_5367_length_587_cov_2.002146:1-587 [pilon] NODE_5295_length_593_cov_2.105932:1-593 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 369 of 593 bases (62.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5295_length_593_cov_2.105932:1-593 [pilon] Processing NODE_234_length_2398_cov_4.203338:1-2398 [pilon] NODE_15014_length_243_cov_5.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15014_length_243_cov_5.262295:1-243 [pilon] Processing NODE_5826_length_554_cov_1.221709:1-554 [pilon] NODE_4624_length_650_cov_6.841210:1-650 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 79, Coverage: 16, minDepth: 5 [pilon] Confirmed 525 of 650 bases (80.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4624_length_650_cov_6.841210:1-650 [pilon] Processing NODE_969_length_1514_cov_21.242642:1-1514 [pilon] NODE_7670_length_434_cov_21.581470:1-434 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 140, Coverage: 25, minDepth: 6 [pilon] Confirmed 348 of 434 bases (80.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7670_length_434_cov_21.581470:1-434 [pilon] Processing NODE_2495_length_968_cov_30.857143:1-968 [pilon] NODE_283_length_2272_cov_18.746629:1-2272 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 932, Coverage: 53, minDepth: 13 [pilon] Confirmed 2013 of 2272 bases (88.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_283_length_2272_cov_18.746629:1-2272 [pilon] Processing NODE_4123_length_702_cov_57.834768:1-702 [pilon] NODE_5540_length_574_cov_24.428256:1-574 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 259, Coverage: 36, minDepth: 9 [pilon] Confirmed 525 of 574 bases (91.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5540_length_574_cov_24.428256:1-574 [pilon] Processing NODE_10654_length_300_cov_8.368715:1-300 [pilon] NODE_9487_length_346_cov_13.173333:1-346 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 60, Coverage: 5, minDepth: 5 [pilon] Confirmed 197 of 346 bases (56.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9487_length_346_cov_13.173333:1-346 [pilon] Processing NODE_3113_length_849_cov_15.083791:1-849 [pilon] NODE_7766_length_429_cov_13.152597:1-429 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 84, Coverage: 5, minDepth: 5 [pilon] Confirmed 211 of 429 bases (49.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7766_length_429_cov_13.152597:1-429 [pilon] Processing NODE_15103_length_220_cov_26.909091:1-220 [pilon] NODE_10134_length_320_cov_41.894472:1-320 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 188, Coverage: 15, minDepth: 5 [pilon] Confirmed 270 of 320 bases (84.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10134_length_320_cov_41.894472:1-320 [pilon] Processing NODE_15046_length_241_cov_19.766667:1-241 [pilon] NODE_11197_length_276_cov_13.225806:1-276 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 55, Coverage: 2, minDepth: 5 [pilon] Confirmed 76 of 276 bases (27.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11197_length_276_cov_13.225806:1-276 [pilon] Processing NODE_2377_length_995_cov_15.451945:1-995 [pilon] NODE_256_length_2315_cov_19.724248:1-2315 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 1009, Coverage: 41, minDepth: 10 [pilon] Confirmed 2159 of 2315 bases (93.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_256_length_2315_cov_19.724248:1-2315 [pilon] Processing NODE_13649_length_243_cov_17.024590:1-243 [pilon] NODE_10679_length_299_cov_10.932584:1-299 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 45, Coverage: 6, minDepth: 5 [pilon] Confirmed 210 of 299 bases (70.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10679_length_299_cov_10.932584:1-299 [pilon] Processing NODE_7351_length_450_cov_25.699088:1-450 [pilon] NODE_10591_length_301_cov_24.500000:1-301 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 98, Coverage: 10, minDepth: 5 [pilon] Confirmed 225 of 301 bases (74.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10591_length_301_cov_24.500000:1-301 [pilon] Processing NODE_5007_length_618_cov_2.050302:1-618 [pilon] NODE_13881_length_243_cov_15.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13881_length_243_cov_15.032787:1-243 [pilon] Processing NODE_3854_length_734_cov_2.270799:1-734 [pilon] NODE_5878_length_549_cov_19.205607:1-549 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 188, Coverage: 20, minDepth: 5 [pilon] Confirmed 409 of 549 bases (74.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5878_length_549_cov_19.205607:1-549 [pilon] NODE_3039_length_866_cov_17.154362:1-866 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 299, Coverage: 23, minDepth: 6 [pilon] Confirmed 659 of 866 bases (76.10%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3039_length_866_cov_17.154362:1-866 [pilon] Processing NODE_9169_length_359_cov_9.260504:1-359 [pilon] Processing NODE_288_length_2268_cov_11.795994:1-2268 [pilon] NODE_2849_length_902_cov_30.370038:1-902 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 547, Coverage: 63, minDepth: 16 [pilon] Confirmed 629 of 902 bases (69.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2849_length_902_cov_30.370038:1-902 [pilon] Processing NODE_11429_length_267_cov_5.897260:1-267 [pilon] NODE_5566_length_573_cov_12.276549:1-573 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 133, Coverage: 21, minDepth: 5 [pilon] Confirmed 499 of 573 bases (87.09%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5566_length_573_cov_12.276549:1-573 [pilon] Processing NODE_6627_length_495_cov_18.946524:1-495 [pilon] NODE_582_length_1828_cov_13.943175:1-1828 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 562, Coverage: 29, minDepth: 7 [pilon] Confirmed 1687 of 1828 bases (92.29%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_582_length_1828_cov_13.943175:1-1828 [pilon] Processing NODE_9244_length_356_cov_17.676596:1-356 [pilon] NODE_13027_length_243_cov_22.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13027_length_243_cov_22.647541:1-243 [pilon] Processing NODE_4148_length_699_cov_2.031142:1-699 [pilon] NODE_8587_length_389_cov_15.981343:1-389 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 103, Coverage: 14, minDepth: 5 [pilon] Confirmed 278 of 389 bases (71.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8587_length_389_cov_15.981343:1-389 [pilon] Processing NODE_11537_length_262_cov_26.971631:1-262 [pilon] NODE_9882_length_330_cov_27.861244:1-330 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 103, Coverage: 6, minDepth: 5 [pilon] Confirmed 148 of 330 bases (44.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9882_length_330_cov_27.861244:1-330 [pilon] NODE_11528_length_263_cov_9.042254:1-263 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 31, Coverage: 2, minDepth: 5 [pilon] Confirmed 15 of 263 bases (5.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_9057_length_363_cov_27.181818:1-363 [pilon] Finished processing NODE_11528_length_263_cov_9.042254:1-263 [pilon] Processing NODE_13121_length_243_cov_21.803279:1-243 [pilon] NODE_1160_length_1414_cov_14.594741:1-1414 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 400, Coverage: 22, minDepth: 6 [pilon] Confirmed 1066 of 1414 bases (75.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1160_length_1414_cov_14.594741:1-1414 [pilon] Processing NODE_1728_length_1171_cov_2.086667:1-1171 [pilon] NODE_969_length_1514_cov_21.242642:1-1514 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 685, Coverage: 37, minDepth: 9 [pilon] Confirmed 1339 of 1514 bases (88.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_969_length_1514_cov_21.242642:1-1514 [pilon] Processing NODE_12644_length_243_cov_26.934426:1-243 [pilon] NODE_234_length_2398_cov_4.203338:1-2398 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 252, Coverage: 13, minDepth: 5 [pilon] Confirmed 2203 of 2398 bases (91.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_234_length_2398_cov_4.203338:1-2398 [pilon] Processing NODE_7835_length_426_cov_0.636066:1-426 [pilon] NODE_10654_length_300_cov_8.368715:1-300 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 31, Coverage: 3, minDepth: 5 [pilon] Confirmed 108 of 300 bases (36.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10654_length_300_cov_8.368715:1-300 [pilon] Processing NODE_14360_length_243_cov_11.377049:1-243 [pilon] NODE_14718_length_243_cov_8.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14718_length_243_cov_8.442623:1-243 [pilon] Processing NODE_1497_length_1259_cov_17.141476:1-1259 [pilon] NODE_2495_length_968_cov_30.857143:1-968 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 611, Coverage: 65, minDepth: 16 [pilon] Confirmed 776 of 968 bases (80.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2495_length_968_cov_30.857143:1-968 [pilon] Processing NODE_2901_length_892_cov_3.738003:1-892 [pilon] NODE_5367_length_587_cov_2.002146:1-587 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 259 of 587 bases (44.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5367_length_587_cov_2.002146:1-587 [pilon] Processing NODE_9266_length_355_cov_10.636752:1-355 [pilon] NODE_3045_length_864_cov_19.449529:1-864 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 372, Coverage: 33, minDepth: 8 [pilon] Confirmed 715 of 864 bases (82.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3045_length_864_cov_19.449529:1-864 [pilon] Processing NODE_13647_length_243_cov_17.081967:1-243 [pilon] NODE_5826_length_554_cov_1.221709:1-554 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 113 of 554 bases (20.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5826_length_554_cov_1.221709:1-554 [pilon] Processing NODE_12594_length_243_cov_27.639344:1-243 [pilon] NODE_3854_length_734_cov_2.270799:1-734 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 36, Coverage: 6, minDepth: 5 [pilon] Confirmed 370 of 734 bases (50.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3854_length_734_cov_2.270799:1-734 [pilon] Processing NODE_13284_length_243_cov_20.327869:1-243 [pilon] NODE_15103_length_220_cov_26.909091:1-220 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 220 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15103_length_220_cov_26.909091:1-220 [pilon] Processing NODE_3891_length_729_cov_3.907895:1-729 [pilon] NODE_3113_length_849_cov_15.083791:1-849 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 484, Coverage: 57, minDepth: 14 [pilon] Confirmed 784 of 849 bases (92.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3113_length_849_cov_15.083791:1-849 [pilon] NODE_4123_length_702_cov_57.834768:1-702 log: [pilon] frags shovill.bam: coverage 119 [pilon] Total Reads: 760, Coverage: 119, minDepth: 30 [pilon] Confirmed 617 of 702 bases (87.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_2912_length_890_cov_13.886866:1-890 [pilon] Finished processing NODE_4123_length_702_cov_57.834768:1-702 [pilon] Processing NODE_7417_length_447_cov_16.849693:1-447 [pilon] NODE_15046_length_241_cov_19.766667:1-241 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 51, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 241 bases (53.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15046_length_241_cov_19.766667:1-241 [pilon] Processing NODE_8603_length_388_cov_14.138577:1-388 [pilon] NODE_2377_length_995_cov_15.451945:1-995 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 350, Coverage: 32, minDepth: 8 [pilon] Confirmed 862 of 995 bases (86.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2377_length_995_cov_15.451945:1-995 [pilon] Processing NODE_8939_length_369_cov_18.596774:1-369 [pilon] NODE_13649_length_243_cov_17.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13649_length_243_cov_17.024590:1-243 [pilon] Processing NODE_8225_length_407_cov_19.066434:1-407 [pilon] NODE_7351_length_450_cov_25.699088:1-450 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 179, Coverage: 27, minDepth: 7 [pilon] Confirmed 335 of 450 bases (74.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7351_length_450_cov_25.699088:1-450 [pilon] Processing NODE_10717_length_297_cov_15.159091:1-297 [pilon] NODE_9169_length_359_cov_9.260504:1-359 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 56, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 359 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9169_length_359_cov_9.260504:1-359 [pilon] Processing NODE_3845_length_735_cov_2.089577:1-735 [pilon] NODE_14360_length_243_cov_11.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14360_length_243_cov_11.377049:1-243 [pilon] Processing NODE_14257_length_243_cov_12.213115:1-243 [pilon] NODE_5007_length_618_cov_2.050302:1-618 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 313 of 618 bases (50.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5007_length_618_cov_2.050302:1-618 [pilon] Processing NODE_3353_length_805_cov_7.451754:1-805 [pilon] NODE_1728_length_1171_cov_2.086667:1-1171 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 59, Coverage: 6, minDepth: 5 [pilon] Confirmed 768 of 1171 bases (65.58%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1728_length_1171_cov_2.086667:1-1171 [pilon] Processing NODE_13490_length_243_cov_18.426230:1-243 [pilon] NODE_2901_length_892_cov_3.738003:1-892 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 80, Coverage: 11, minDepth: 5 [pilon] Confirmed 765 of 892 bases (85.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2901_length_892_cov_3.738003:1-892 [pilon] Processing NODE_13777_length_243_cov_15.852459:1-243 [pilon] NODE_12644_length_243_cov_26.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12644_length_243_cov_26.934426:1-243 [pilon] Processing NODE_12043_length_246_cov_7.272000:1-246 [pilon] NODE_11429_length_267_cov_5.897260:1-267 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 20, Coverage: 3, minDepth: 5 [pilon] Confirmed 105 of 267 bases (39.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11429_length_267_cov_5.897260:1-267 [pilon] Processing NODE_3541_length_778_cov_29.692542:1-778 [pilon] NODE_6627_length_495_cov_18.946524:1-495 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 168, Coverage: 23, minDepth: 6 [pilon] Confirmed 318 of 495 bases (64.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6627_length_495_cov_18.946524:1-495 [pilon] Processing NODE_13079_length_243_cov_22.139344:1-243 [pilon] NODE_9244_length_356_cov_17.676596:1-356 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 78, Coverage: 2, minDepth: 5 [pilon] Confirmed 111 of 356 bases (31.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9244_length_356_cov_17.676596:1-356 [pilon] Processing NODE_8801_length_377_cov_26.175781:1-377 [pilon] NODE_288_length_2268_cov_11.795994:1-2268 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 747, Coverage: 28, minDepth: 7 [pilon] Confirmed 1860 of 2268 bases (82.01%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_288_length_2268_cov_11.795994:1-2268 [pilon] Processing NODE_14161_length_243_cov_13.000000:1-243 [pilon] NODE_4148_length_699_cov_2.031142:1-699 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 39, Coverage: 7, minDepth: 5 [pilon] Confirmed 351 of 699 bases (50.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4148_length_699_cov_2.031142:1-699 [pilon] Processing NODE_10465_length_306_cov_12.848649:1-306 [pilon] NODE_13121_length_243_cov_21.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13121_length_243_cov_21.803279:1-243 [pilon] Processing NODE_4500_length_662_cov_1.706100:1-662 [pilon] NODE_7835_length_426_cov_0.636066:1-426 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 426 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7835_length_426_cov_0.636066:1-426 [pilon] Processing NODE_13814_length_243_cov_15.532787:1-243 [pilon] NODE_11537_length_262_cov_26.971631:1-262 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 90, Coverage: 8, minDepth: 5 [pilon] Confirmed 204 of 262 bases (77.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11537_length_262_cov_26.971631:1-262 [pilon] Processing NODE_865_length_1586_cov_5.334471:1-1586 [pilon] NODE_9057_length_363_cov_27.181818:1-363 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 150, Coverage: 17, minDepth: 5 [pilon] Confirmed 257 of 363 bases (70.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9057_length_363_cov_27.181818:1-363 [pilon] Processing NODE_2590_length_947_cov_13.588378:1-947 [pilon] NODE_13284_length_243_cov_20.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13284_length_243_cov_20.327869:1-243 [pilon] Processing NODE_2742_length_920_cov_0.866083:1-920 [pilon] NODE_9266_length_355_cov_10.636752:1-355 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 59, Coverage: 12, minDepth: 5 [pilon] Confirmed 309 of 355 bases (87.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9266_length_355_cov_10.636752:1-355 [pilon] Processing NODE_3522_length_780_cov_25.153263:1-780 [pilon] NODE_1497_length_1259_cov_17.141476:1-1259 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 483, Coverage: 36, minDepth: 9 [pilon] Confirmed 947 of 1259 bases (75.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1497_length_1259_cov_17.141476:1-1259 [pilon] Processing NODE_3711_length_753_cov_16.856013:1-753 [pilon] NODE_13647_length_243_cov_17.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13647_length_243_cov_17.081967:1-243 [pilon] Processing NODE_224_length_2417_cov_4.661585:1-2417 [pilon] NODE_12594_length_243_cov_27.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12594_length_243_cov_27.639344:1-243 [pilon] Processing NODE_12159_length_243_cov_38.836066:1-243 [pilon] NODE_12043_length_246_cov_7.272000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 19, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12043_length_246_cov_7.272000:1-246 [pilon] Processing NODE_14760_length_243_cov_8.040984:1-243 [pilon] NODE_14257_length_243_cov_12.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14257_length_243_cov_12.213115:1-243 [pilon] Processing NODE_2585_length_948_cov_23.394196:1-948 [pilon] NODE_3891_length_729_cov_3.907895:1-729 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 68, Coverage: 12, minDepth: 5 [pilon] Confirmed 420 of 729 bases (57.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3891_length_729_cov_3.907895:1-729 [pilon] Processing NODE_5732_length_560_cov_47.694761:1-560 [pilon] NODE_7417_length_447_cov_16.849693:1-447 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 101, Coverage: 14, minDepth: 5 [pilon] Confirmed 275 of 447 bases (61.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7417_length_447_cov_16.849693:1-447 [pilon] Processing NODE_13498_length_243_cov_18.368852:1-243 [pilon] NODE_8603_length_388_cov_14.138577:1-388 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 91, Coverage: 14, minDepth: 5 [pilon] Confirmed 320 of 388 bases (82.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8603_length_388_cov_14.138577:1-388 [pilon] Processing NODE_1453_length_1279_cov_20.580311:1-1279 [pilon] NODE_13490_length_243_cov_18.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13490_length_243_cov_18.426230:1-243 [pilon] Processing NODE_1321_length_1332_cov_13.908340:1-1332 [pilon] NODE_2912_length_890_cov_13.886866:1-890 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 262, Coverage: 33, minDepth: 8 [pilon] Confirmed 713 of 890 bases (80.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2912_length_890_cov_13.886866:1-890 [pilon] NODE_13777_length_243_cov_15.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_13690_length_243_cov_16.483607:1-243 [pilon] Finished processing NODE_13777_length_243_cov_15.852459:1-243 [pilon] Processing NODE_6065_length_534_cov_22.377724:1-534 [pilon] NODE_10717_length_297_cov_15.159091:1-297 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 66, Coverage: 8, minDepth: 5 [pilon] Confirmed 196 of 297 bases (65.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10717_length_297_cov_15.159091:1-297 [pilon] Processing NODE_13257_length_243_cov_20.540984:1-243 [pilon] NODE_8939_length_369_cov_18.596774:1-369 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 102, Coverage: 12, minDepth: 5 [pilon] Confirmed 245 of 369 bases (66.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8939_length_369_cov_18.596774:1-369 [pilon] Processing NODE_7181_length_461_cov_0.617647:1-461 [pilon] NODE_8225_length_407_cov_19.066434:1-407 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 125, Coverage: 16, minDepth: 5 [pilon] Confirmed 283 of 407 bases (69.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8225_length_407_cov_19.066434:1-407 [pilon] Processing NODE_1514_length_1252_cov_14.432361:1-1252 [pilon] NODE_3845_length_735_cov_2.089577:1-735 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 417 of 735 bases (56.73%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3845_length_735_cov_2.089577:1-735 [pilon] Processing NODE_13219_length_243_cov_20.901639:1-243 [pilon] NODE_3541_length_778_cov_29.692542:1-778 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 480, Coverage: 57, minDepth: 14 [pilon] Confirmed 698 of 778 bases (89.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3541_length_778_cov_29.692542:1-778 [pilon] Processing NODE_8822_length_375_cov_32.846457:1-375 [pilon] NODE_3353_length_805_cov_7.451754:1-805 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 139, Coverage: 22, minDepth: 6 [pilon] Confirmed 520 of 805 bases (64.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3353_length_805_cov_7.451754:1-805 [pilon] Processing NODE_15204_length_157_cov_13.833333:1-157 [pilon] NODE_13079_length_243_cov_22.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13079_length_243_cov_22.139344:1-243 [pilon] Processing NODE_3077_length_858_cov_5.729986:1-858 [pilon] NODE_4500_length_662_cov_1.706100:1-662 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 471 of 662 bases (71.15%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4500_length_662_cov_1.706100:1-662 [pilon] Processing NODE_15128_length_203_cov_26.329268:1-203 [pilon] NODE_865_length_1586_cov_5.334471:1-1586 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 193, Coverage: 16, minDepth: 5 [pilon] Confirmed 1090 of 1586 bases (68.73%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_865_length_1586_cov_5.334471:1-1586 [pilon] Processing NODE_989_length_1504_cov_1.725958:1-1504 [pilon] NODE_14161_length_243_cov_13.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14161_length_243_cov_13.000000:1-243 [pilon] Processing NODE_10125_length_321_cov_9.115000:1-321 [pilon] NODE_10465_length_306_cov_12.848649:1-306 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 57, Coverage: 3, minDepth: 5 [pilon] Confirmed 104 of 306 bases (33.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10465_length_306_cov_12.848649:1-306 [pilon] Processing NODE_2633_length_941_cov_2.763415:1-941 [pilon] NODE_8801_length_377_cov_26.175781:1-377 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 161, Coverage: 19, minDepth: 5 [pilon] Confirmed 262 of 377 bases (69.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8801_length_377_cov_26.175781:1-377 [pilon] Processing NODE_4919_length_624_cov_43.938370:1-624 [pilon] NODE_2742_length_920_cov_0.866083:1-920 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 23, Coverage: 2, minDepth: 5 [pilon] Confirmed 140 of 920 bases (15.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2742_length_920_cov_0.866083:1-920 [pilon] Processing NODE_13023_length_243_cov_22.688525:1-243 [pilon] NODE_13814_length_243_cov_15.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13814_length_243_cov_15.532787:1-243 [pilon] Processing NODE_10023_length_324_cov_22.591133:1-324 [pilon] NODE_2590_length_947_cov_13.588378:1-947 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 253, Coverage: 26, minDepth: 7 [pilon] Confirmed 760 of 947 bases (80.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2590_length_947_cov_13.588378:1-947 [pilon] Processing NODE_14895_length_243_cov_6.762295:1-243 [pilon] NODE_5732_length_560_cov_47.694761:1-560 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 493, Coverage: 70, minDepth: 18 [pilon] Confirmed 452 of 560 bases (80.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5732_length_560_cov_47.694761:1-560 [pilon] Processing NODE_5093_length_611_cov_1.906122:1-611 [pilon] NODE_3711_length_753_cov_16.856013:1-753 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 257, Coverage: 28, minDepth: 7 [pilon] Confirmed 676 of 753 bases (89.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3711_length_753_cov_16.856013:1-753 [pilon] Processing NODE_6559_length_500_cov_1.356201:1-500 [pilon] NODE_3522_length_780_cov_25.153263:1-780 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 466, Coverage: 51, minDepth: 13 [pilon] Confirmed 593 of 780 bases (76.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3522_length_780_cov_25.153263:1-780 [pilon] Processing NODE_8044_length_416_cov_1.467797:1-416 [pilon] NODE_224_length_2417_cov_4.661585:1-2417 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 252, Coverage: 14, minDepth: 5 [pilon] Confirmed 2198 of 2417 bases (90.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_224_length_2417_cov_4.661585:1-2417 [pilon] Processing NODE_7757_length_429_cov_22.876623:1-429 [pilon] NODE_12159_length_243_cov_38.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 84, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12159_length_243_cov_38.836066:1-243 [pilon] Processing NODE_7998_length_418_cov_18.478114:1-418 [pilon] NODE_14760_length_243_cov_8.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14760_length_243_cov_8.040984:1-243 [pilon] Processing NODE_163_length_2672_cov_2.508428:1-2672 [pilon] NODE_13690_length_243_cov_16.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_2585_length_948_cov_23.394196:1-948 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 416, Coverage: 39, minDepth: 10 [pilon] Confirmed 863 of 948 bases (91.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13690_length_243_cov_16.483607:1-243 [pilon] Processing NODE_12189_length_243_cov_37.204918:1-243 [pilon] Finished processing NODE_2585_length_948_cov_23.394196:1-948 [pilon] Processing NODE_7712_length_432_cov_13.778135:1-432 [pilon] NODE_15128_length_203_cov_26.329268:1-203 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 203 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15128_length_203_cov_26.329268:1-203 [pilon] Processing NODE_4478_length_663_cov_27.280443:1-663 [pilon] NODE_13498_length_243_cov_18.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13498_length_243_cov_18.368852:1-243 [pilon] Processing NODE_14280_length_243_cov_12.000000:1-243 [pilon] NODE_6065_length_534_cov_22.377724:1-534 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 242, Coverage: 26, minDepth: 7 [pilon] Confirmed 361 of 534 bases (67.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6065_length_534_cov_22.377724:1-534 [pilon] Processing NODE_10686_length_298_cov_31.457627:1-298 [pilon] NODE_1453_length_1279_cov_20.580311:1-1279 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 747, Coverage: 69, minDepth: 17 [pilon] Confirmed 1002 of 1279 bases (78.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1453_length_1279_cov_20.580311:1-1279 [pilon] Processing NODE_3367_length_802_cov_29.820852:1-802 [pilon] NODE_989_length_1504_cov_1.725958:1-1504 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 62, Coverage: 5, minDepth: 5 [pilon] Confirmed 818 of 1504 bases (54.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_989_length_1504_cov_1.725958:1-1504 [pilon] Processing NODE_10630_length_300_cov_18.223464:1-300 [pilon] NODE_1321_length_1332_cov_13.908340:1-1332 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 591, Coverage: 41, minDepth: 10 [pilon] Confirmed 844 of 1332 bases (63.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1321_length_1332_cov_13.908340:1-1332 [pilon] Processing NODE_12784_length_243_cov_25.221311:1-243 [pilon] NODE_13257_length_243_cov_20.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13257_length_243_cov_20.540984:1-243 [pilon] Processing NODE_9247_length_356_cov_12.548936:1-356 [pilon] NODE_7181_length_461_cov_0.617647:1-461 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 9, Coverage: 3, minDepth: 5 [pilon] Confirmed 66 of 461 bases (14.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7181_length_461_cov_0.617647:1-461 [pilon] Processing NODE_3223_length_830_cov_5.190409:1-830 [pilon] NODE_1514_length_1252_cov_14.432361:1-1252 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 377, Coverage: 28, minDepth: 7 [pilon] Confirmed 951 of 1252 bases (75.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1514_length_1252_cov_14.432361:1-1252 [pilon] Processing NODE_7332_length_452_cov_0.673716:1-452 [pilon] NODE_15204_length_157_cov_13.833333:1-157 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 157 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15204_length_157_cov_13.833333:1-157 [pilon] Processing NODE_13685_length_243_cov_16.581967:1-243 [pilon] NODE_13219_length_243_cov_20.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13219_length_243_cov_20.901639:1-243 [pilon] Processing NODE_3247_length_824_cov_48.506401:1-824 [pilon] NODE_8822_length_375_cov_32.846457:1-375 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 147, Coverage: 19, minDepth: 5 [pilon] Confirmed 251 of 375 bases (66.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8822_length_375_cov_32.846457:1-375 [pilon] Processing NODE_4603_length_652_cov_48.280603:1-652 [pilon] NODE_3077_length_858_cov_5.729986:1-858 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 118, Coverage: 12, minDepth: 5 [pilon] Confirmed 491 of 858 bases (57.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3077_length_858_cov_5.729986:1-858 [pilon] Processing NODE_4193_length_694_cov_24.813264:1-694 [pilon] NODE_5093_length_611_cov_1.906122:1-611 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 445 of 611 bases (72.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5093_length_611_cov_1.906122:1-611 [pilon] Processing NODE_9034_length_364_cov_67.246914:1-364 [pilon] NODE_10125_length_321_cov_9.115000:1-321 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 51, Coverage: 7, minDepth: 5 [pilon] Confirmed 260 of 321 bases (81.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10125_length_321_cov_9.115000:1-321 [pilon] Processing NODE_2530_length_961_cov_1.964286:1-961 [pilon] NODE_13023_length_243_cov_22.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13023_length_243_cov_22.688525:1-243 [pilon] Processing NODE_6205_length_524_cov_3.746898:1-524 [pilon] NODE_2633_length_941_cov_2.763415:1-941 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 62, Coverage: 9, minDepth: 5 [pilon] Confirmed 530 of 941 bases (56.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2633_length_941_cov_2.763415:1-941 [pilon] Processing NODE_7578_length_439_cov_0.745283:1-439 [pilon] NODE_14895_length_243_cov_6.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14895_length_243_cov_6.762295:1-243 [pilon] Processing NODE_14159_length_243_cov_13.016393:1-243 [pilon] NODE_10023_length_324_cov_22.591133:1-324 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 91, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 324 bases (39.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10023_length_324_cov_22.591133:1-324 [pilon] Processing NODE_15216_length_151_cov_18.033333:1-151 [pilon] NODE_8044_length_416_cov_1.467797:1-416 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 208 of 416 bases (50.00%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8044_length_416_cov_1.467797:1-416 [pilon] Processing NODE_5312_length_591_cov_56.072340:1-591 [pilon] NODE_4919_length_624_cov_43.938370:1-624 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 502, Coverage: 75, minDepth: 19 [pilon] Confirmed 537 of 624 bases (86.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4919_length_624_cov_43.938370:1-624 [pilon] Processing NODE_15096_length_223_cov_47.813725:1-223 [pilon] NODE_12189_length_243_cov_37.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 96, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12189_length_243_cov_37.204918:1-243 [pilon] Processing NODE_6690_length_491_cov_13.159459:1-491 [pilon] NODE_6559_length_500_cov_1.356201:1-500 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 15, Coverage: 4, minDepth: 5 [pilon] Confirmed 143 of 500 bases (28.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6559_length_500_cov_1.356201:1-500 [pilon] Processing NODE_9000_length_366_cov_27.620408:1-366 [pilon] NODE_7998_length_418_cov_18.478114:1-418 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 123, Coverage: 19, minDepth: 5 [pilon] Confirmed 319 of 418 bases (76.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7998_length_418_cov_18.478114:1-418 [pilon] Processing NODE_3063_length_860_cov_23.253045:1-860 [pilon] NODE_10630_length_300_cov_18.223464:1-300 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 72, Coverage: 6, minDepth: 5 [pilon] Confirmed 194 of 300 bases (64.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10630_length_300_cov_18.223464:1-300 [pilon] Processing NODE_4210_length_692_cov_34.875657:1-692 [pilon] NODE_7757_length_429_cov_22.876623:1-429 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 147, Coverage: 22, minDepth: 6 [pilon] Confirmed 342 of 429 bases (79.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7757_length_429_cov_22.876623:1-429 [pilon] Processing NODE_13862_length_243_cov_15.180328:1-243 [pilon] NODE_163_length_2672_cov_2.508428:1-2672 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 191, Coverage: 9, minDepth: 5 [pilon] Confirmed 1973 of 2672 bases (73.84%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_163_length_2672_cov_2.508428:1-2672 [pilon] Processing NODE_6204_length_524_cov_5.933002:1-524 [pilon] NODE_4478_length_663_cov_27.280443:1-663 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 324, Coverage: 40, minDepth: 10 [pilon] Confirmed 589 of 663 bases (88.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4478_length_663_cov_27.280443:1-663 [pilon] Processing NODE_7364_length_450_cov_15.258359:1-450 [pilon] NODE_10686_length_298_cov_31.457627:1-298 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 119, Coverage: 16, minDepth: 5 [pilon] Confirmed 243 of 298 bases (81.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10686_length_298_cov_31.457627:1-298 [pilon] NODE_14280_length_243_cov_12.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14280_length_243_cov_12.000000:1-243 [pilon] Processing NODE_7195_length_460_cov_4.554572:1-460 [pilon] Processing NODE_783_length_1632_cov_10.962277:1-1632 [pilon] NODE_3367_length_802_cov_29.820852:1-802 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 452, Coverage: 56, minDepth: 14 [pilon] Confirmed 753 of 802 bases (93.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3367_length_802_cov_29.820852:1-802 [pilon] Processing NODE_14866_length_243_cov_7.016393:1-243 [pilon] NODE_12784_length_243_cov_25.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12784_length_243_cov_25.221311:1-243 [pilon] Processing NODE_6447_length_507_cov_16.101036:1-507 [pilon] NODE_7578_length_439_cov_0.745283:1-439 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 439 bases (28.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7578_length_439_cov_0.745283:1-439 [pilon] Processing NODE_12106_length_243_cov_47.188525:1-243 [pilon] NODE_3223_length_830_cov_5.190409:1-830 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 103, Coverage: 16, minDepth: 5 [pilon] Confirmed 799 of 830 bases (96.27%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3223_length_830_cov_5.190409:1-830 [pilon] Processing NODE_924_length_1543_cov_6.238397:1-1543 [pilon] NODE_9247_length_356_cov_12.548936:1-356 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 72, Coverage: 11, minDepth: 5 [pilon] Confirmed 288 of 356 bases (80.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9247_length_356_cov_12.548936:1-356 [pilon] NODE_7712_length_432_cov_13.778135:1-432 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 91, Coverage: 12, minDepth: 5 [pilon] Confirmed 381 of 432 bases (88.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_13604_length_243_cov_17.467213:1-243 [pilon] Finished processing NODE_7712_length_432_cov_13.778135:1-432 [pilon] Processing NODE_8212_length_408_cov_3.404181:1-408 [pilon] NODE_9034_length_364_cov_67.246914:1-364 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 366, Coverage: 56, minDepth: 14 [pilon] Confirmed 310 of 364 bases (85.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9034_length_364_cov_67.246914:1-364 [pilon] Processing NODE_14497_length_243_cov_10.319672:1-243 [pilon] NODE_13685_length_243_cov_16.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13685_length_243_cov_16.581967:1-243 [pilon] Processing NODE_14258_length_243_cov_12.172131:1-243 [pilon] NODE_5312_length_591_cov_56.072340:1-591 log: [pilon] frags shovill.bam: coverage 95 [pilon] Total Reads: 619, Coverage: 95, minDepth: 24 [pilon] Confirmed 530 of 591 bases (89.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5312_length_591_cov_56.072340:1-591 [pilon] Processing NODE_9827_length_333_cov_17.216981:1-333 [pilon] NODE_7332_length_452_cov_0.673716:1-452 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 61 of 452 bases (13.50%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7332_length_452_cov_0.673716:1-452 [pilon] Processing NODE_2485_length_970_cov_22.193168:1-970 [pilon] NODE_4193_length_694_cov_24.813264:1-694 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 327, Coverage: 40, minDepth: 10 [pilon] Confirmed 496 of 694 bases (71.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4193_length_694_cov_24.813264:1-694 [pilon] Processing NODE_6765_length_485_cov_21.804945:1-485 [pilon] NODE_6690_length_491_cov_13.159459:1-491 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 126, Coverage: 9, minDepth: 5 [pilon] Confirmed 329 of 491 bases (67.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6690_length_491_cov_13.159459:1-491 [pilon] Processing NODE_6093_length_532_cov_51.532847:1-532 [pilon] NODE_3247_length_824_cov_48.506401:1-824 log: [pilon] frags shovill.bam: coverage 99 [pilon] Total Reads: 768, Coverage: 99, minDepth: 25 [pilon] Confirmed 708 of 824 bases (85.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3247_length_824_cov_48.506401:1-824 [pilon] Processing NODE_11924_length_249_cov_11.546875:1-249 [pilon] NODE_6205_length_524_cov_3.746898:1-524 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 33, Coverage: 8, minDepth: 5 [pilon] Confirmed 287 of 524 bases (54.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6205_length_524_cov_3.746898:1-524 [pilon] Processing NODE_14312_length_243_cov_11.770492:1-243 [pilon] NODE_4603_length_652_cov_48.280603:1-652 log: [pilon] frags shovill.bam: coverage 86 [pilon] Total Reads: 594, Coverage: 86, minDepth: 22 [pilon] Confirmed 598 of 652 bases (91.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4603_length_652_cov_48.280603:1-652 [pilon] Processing NODE_4650_length_648_cov_7.070209:1-648 [pilon] NODE_2530_length_961_cov_1.964286:1-961 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 63, Coverage: 8, minDepth: 5 [pilon] Confirmed 758 of 961 bases (78.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2530_length_961_cov_1.964286:1-961 [pilon] Processing NODE_3811_length_739_cov_18.689320:1-739 [pilon] NODE_15216_length_151_cov_18.033333:1-151 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 151 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15216_length_151_cov_18.033333:1-151 [pilon] Processing NODE_5069_length_613_cov_13.308943:1-613 [pilon] NODE_15096_length_223_cov_47.813725:1-223 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 81, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 223 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15096_length_223_cov_47.813725:1-223 [pilon] Processing NODE_2649_length_938_cov_1.686659:1-938 [pilon] NODE_14159_length_243_cov_13.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14159_length_243_cov_13.016393:1-243 [pilon] NODE_4210_length_692_cov_34.875657:1-692 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 447, Coverage: 55, minDepth: 14 [pilon] Confirmed 604 of 692 bases (87.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4210_length_692_cov_34.875657:1-692 [pilon] Processing NODE_4021_length_713_cov_19.574324:1-713 [pilon] Processing NODE_9218_length_357_cov_15.978814:1-357 [pilon] NODE_783_length_1632_cov_10.962277:1-1632 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 571, Coverage: 44, minDepth: 11 [pilon] Confirmed 1272 of 1632 bases (77.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_783_length_1632_cov_10.962277:1-1632 [pilon] Processing NODE_883_length_1573_cov_29.494490:1-1573 [pilon] NODE_9000_length_366_cov_27.620408:1-366 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 142, Coverage: 20, minDepth: 5 [pilon] Confirmed 254 of 366 bases (69.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9000_length_366_cov_27.620408:1-366 [pilon] Processing NODE_12937_length_243_cov_23.565574:1-243 [pilon] NODE_12106_length_243_cov_47.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 127, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12106_length_243_cov_47.188525:1-243 [pilon] Processing NODE_13085_length_243_cov_22.090164:1-243 [pilon] NODE_13862_length_243_cov_15.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13862_length_243_cov_15.180328:1-243 [pilon] Processing NODE_5771_length_558_cov_1.926773:1-558 [pilon] NODE_3063_length_860_cov_23.253045:1-860 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 388, Coverage: 41, minDepth: 10 [pilon] Confirmed 682 of 860 bases (79.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3063_length_860_cov_23.253045:1-860 [pilon] Processing NODE_11158_length_277_cov_15.134615:1-277 [pilon] NODE_924_length_1543_cov_6.238397:1-1543 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 292, Coverage: 20, minDepth: 5 [pilon] Confirmed 1016 of 1543 bases (65.85%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_924_length_1543_cov_6.238397:1-1543 [pilon] Processing NODE_6930_length_476_cov_0.735211:1-476 [pilon] NODE_7195_length_460_cov_4.554572:1-460 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 66, Coverage: 12, minDepth: 5 [pilon] Confirmed 350 of 460 bases (76.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7195_length_460_cov_4.554572:1-460 [pilon] Processing NODE_8863_length_374_cov_8.146245:1-374 [pilon] NODE_6093_length_532_cov_51.532847:1-532 log: [pilon] frags shovill.bam: coverage 82 [pilon] Total Reads: 462, Coverage: 82, minDepth: 21 [pilon] Confirmed 428 of 532 bases (80.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6093_length_532_cov_51.532847:1-532 [pilon] Processing NODE_2749_length_918_cov_1.647428:1-918 [pilon] NODE_6204_length_524_cov_5.933002:1-524 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 75, Coverage: 8, minDepth: 5 [pilon] Confirmed 357 of 524 bases (68.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6204_length_524_cov_5.933002:1-524 [pilon] Processing NODE_9108_length_361_cov_14.733333:1-361 [pilon] NODE_7364_length_450_cov_15.258359:1-450 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 116, Coverage: 20, minDepth: 5 [pilon] Confirmed 412 of 450 bases (91.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7364_length_450_cov_15.258359:1-450 [pilon] Processing NODE_8452_length_396_cov_23.618182:1-396 [pilon] NODE_14866_length_243_cov_7.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14866_length_243_cov_7.016393:1-243 [pilon] Processing NODE_13917_length_243_cov_14.786885:1-243 [pilon] NODE_6447_length_507_cov_16.101036:1-507 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 143, Coverage: 21, minDepth: 5 [pilon] Confirmed 408 of 507 bases (80.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6447_length_507_cov_16.101036:1-507 [pilon] Processing NODE_11602_length_260_cov_16.223022:1-260 [pilon] NODE_13604_length_243_cov_17.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13604_length_243_cov_17.467213:1-243 [pilon] Processing NODE_2632_length_941_cov_2.851220:1-941 [pilon] NODE_9218_length_357_cov_15.978814:1-357 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 96, Coverage: 8, minDepth: 5 [pilon] Confirmed 183 of 357 bases (51.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9218_length_357_cov_15.978814:1-357 [pilon] Processing NODE_9938_length_328_cov_14.874396:1-328 [pilon] NODE_14258_length_243_cov_12.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14258_length_243_cov_12.172131:1-243 [pilon] Processing NODE_14177_length_243_cov_12.803279:1-243 [pilon] NODE_8212_length_408_cov_3.404181:1-408 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 27, Coverage: 8, minDepth: 5 [pilon] Confirmed 262 of 408 bases (64.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8212_length_408_cov_3.404181:1-408 [pilon] Processing NODE_4599_length_653_cov_11.488722:1-653 [pilon] NODE_9827_length_333_cov_17.216981:1-333 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 63, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 333 bases (39.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9827_length_333_cov_17.216981:1-333 [pilon] Processing NODE_1340_length_1325_cov_20.978405:1-1325 [pilon] NODE_6765_length_485_cov_21.804945:1-485 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 145, Coverage: 16, minDepth: 5 [pilon] Confirmed 367 of 485 bases (75.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6765_length_485_cov_21.804945:1-485 [pilon] Processing NODE_3997_length_715_cov_29.361953:1-715 [pilon] NODE_14497_length_243_cov_10.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14497_length_243_cov_10.319672:1-243 [pilon] Processing NODE_6676_length_492_cov_16.336927:1-492 [pilon] NODE_14312_length_243_cov_11.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14312_length_243_cov_11.770492:1-243 [pilon] Processing NODE_9102_length_361_cov_21.304167:1-361 [pilon] NODE_2649_length_938_cov_1.686659:1-938 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 39, Coverage: 5, minDepth: 5 [pilon] Confirmed 376 of 938 bases (40.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2649_length_938_cov_1.686659:1-938 [pilon] Processing NODE_13802_length_243_cov_15.647541:1-243 [pilon] NODE_11924_length_249_cov_11.546875:1-249 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 35, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11924_length_249_cov_11.546875:1-249 [pilon] Processing NODE_512_length_1904_cov_19.890073:1-1904 [pilon] NODE_5069_length_613_cov_13.308943:1-613 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 158, Coverage: 26, minDepth: 7 [pilon] Confirmed 465 of 613 bases (75.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5069_length_613_cov_13.308943:1-613 [pilon] Processing NODE_7705_length_432_cov_16.405145:1-432 [pilon] NODE_3811_length_739_cov_18.689320:1-739 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 284, Coverage: 28, minDepth: 7 [pilon] Confirmed 697 of 739 bases (94.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3811_length_739_cov_18.689320:1-739 [pilon] Processing NODE_14990_length_243_cov_5.557377:1-243 [pilon] NODE_2485_length_970_cov_22.193168:1-970 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 574, Coverage: 59, minDepth: 15 [pilon] Confirmed 828 of 970 bases (85.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2485_length_970_cov_22.193168:1-970 [pilon] Processing NODE_2629_length_941_cov_18.665854:1-941 [pilon] NODE_4650_length_648_cov_7.070209:1-648 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 101, Coverage: 14, minDepth: 5 [pilon] Confirmed 519 of 648 bases (80.09%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4650_length_648_cov_7.070209:1-648 [pilon] Processing NODE_14425_length_243_cov_10.877049:1-243 [pilon] NODE_883_length_1573_cov_29.494490:1-1573 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 1099, Coverage: 79, minDepth: 20 [pilon] Confirmed 1168 of 1573 bases (74.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_883_length_1573_cov_29.494490:1-1573 [pilon] Processing NODE_4524_length_659_cov_18.529740:1-659 [pilon] NODE_4021_length_713_cov_19.574324:1-713 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 265, Coverage: 35, minDepth: 9 [pilon] Confirmed 577 of 713 bases (80.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4021_length_713_cov_19.574324:1-713 [pilon] Processing NODE_9601_length_342_cov_11.932127:1-342 [pilon] NODE_2749_length_918_cov_1.647428:1-918 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 50, Coverage: 6, minDepth: 5 [pilon] Confirmed 464 of 918 bases (50.54%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2749_length_918_cov_1.647428:1-918 [pilon] Processing NODE_10443_length_306_cov_23.270270:1-306 [pilon] NODE_12937_length_243_cov_23.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12937_length_243_cov_23.565574:1-243 [pilon] Processing NODE_9634_length_340_cov_11.986301:1-340 [pilon] NODE_5771_length_558_cov_1.926773:1-558 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 285 of 558 bases (51.08%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5771_length_558_cov_1.926773:1-558 [pilon] Processing NODE_4203_length_693_cov_42.622378:1-693 [pilon] NODE_13085_length_243_cov_22.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13085_length_243_cov_22.090164:1-243 [pilon] Processing NODE_11405_length_267_cov_17.246575:1-267 [pilon] NODE_9938_length_328_cov_14.874396:1-328 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 203 of 328 bases (61.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9938_length_328_cov_14.874396:1-328 [pilon] Processing NODE_9936_length_328_cov_17.246377:1-328 [pilon] NODE_6930_length_476_cov_0.735211:1-476 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 476 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6930_length_476_cov_0.735211:1-476 [pilon] Processing NODE_1717_length_1175_cov_7.634725:1-1175 [pilon] NODE_11158_length_277_cov_15.134615:1-277 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 54, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 277 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11158_length_277_cov_15.134615:1-277 [pilon] Processing NODE_3762_length_746_cov_1.771200:1-746 [pilon] NODE_2632_length_941_cov_2.851220:1-941 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 62, Coverage: 9, minDepth: 5 [pilon] Confirmed 721 of 941 bases (76.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2632_length_941_cov_2.851220:1-941 [pilon] Processing NODE_3438_length_793_cov_9.717262:1-793 [pilon] NODE_8863_length_374_cov_8.146245:1-374 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 42, Coverage: 5, minDepth: 5 [pilon] Confirmed 177 of 374 bases (47.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8863_length_374_cov_8.146245:1-374 [pilon] Processing NODE_9194_length_357_cov_27.906780:1-357 [pilon] NODE_9108_length_361_cov_14.733333:1-361 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 86, Coverage: 14, minDepth: 5 [pilon] Confirmed 257 of 361 bases (71.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9108_length_361_cov_14.733333:1-361 [pilon] Processing NODE_3315_length_812_cov_44.063676:1-812 [pilon] NODE_13917_length_243_cov_14.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13917_length_243_cov_14.786885:1-243 [pilon] Processing NODE_9810_length_333_cov_27.320755:1-333 [pilon] NODE_8452_length_396_cov_23.618182:1-396 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 140, Coverage: 11, minDepth: 5 [pilon] Confirmed 242 of 396 bases (61.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8452_length_396_cov_23.618182:1-396 [pilon] Processing NODE_11074_length_280_cov_17.465409:1-280 [pilon] NODE_14177_length_243_cov_12.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14177_length_243_cov_12.803279:1-243 [pilon] Processing NODE_3856_length_734_cov_0.704731:1-734 [pilon] NODE_11602_length_260_cov_16.223022:1-260 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 43, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 260 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11602_length_260_cov_16.223022:1-260 [pilon] Processing NODE_13041_length_243_cov_22.524590:1-243 [pilon] NODE_9102_length_361_cov_21.304167:1-361 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 127, Coverage: 12, minDepth: 5 [pilon] Confirmed 249 of 361 bases (68.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9102_length_361_cov_21.304167:1-361 [pilon] Processing NODE_7953_length_420_cov_16.414716:1-420 [pilon] NODE_512_length_1904_cov_19.890073:1-1904 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 843, Coverage: 52, minDepth: 13 [pilon] Confirmed 1374 of 1904 bases (72.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_512_length_1904_cov_19.890073:1-1904 [pilon] Processing NODE_11637_length_258_cov_21.343066:1-258 [pilon] NODE_4599_length_653_cov_11.488722:1-653 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 159, Coverage: 30, minDepth: 8 [pilon] Confirmed 501 of 653 bases (76.72%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4599_length_653_cov_11.488722:1-653 [pilon] Processing NODE_12524_length_243_cov_28.762295:1-243 [pilon] NODE_6676_length_492_cov_16.336927:1-492 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 107, Coverage: 15, minDepth: 5 [pilon] Confirmed 334 of 492 bases (67.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6676_length_492_cov_16.336927:1-492 [pilon] Processing NODE_11192_length_276_cov_16.219355:1-276 [pilon] NODE_3997_length_715_cov_29.361953:1-715 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 402, Coverage: 34, minDepth: 9 [pilon] Confirmed 560 of 715 bases (78.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3997_length_715_cov_29.361953:1-715 [pilon] Processing NODE_4832_length_632_cov_3.074364:1-632 [pilon] NODE_13802_length_243_cov_15.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13802_length_243_cov_15.647541:1-243 [pilon] Processing NODE_5353_length_588_cov_3.584582:1-588 [pilon] NODE_7705_length_432_cov_16.405145:1-432 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 132, Coverage: 17, minDepth: 5 [pilon] Confirmed 391 of 432 bases (90.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7705_length_432_cov_16.405145:1-432 [pilon] Processing NODE_14223_length_243_cov_12.393443:1-243 [pilon] NODE_1340_length_1325_cov_20.978405:1-1325 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 608, Coverage: 54, minDepth: 14 [pilon] Confirmed 1165 of 1325 bases (87.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1340_length_1325_cov_20.978405:1-1325 [pilon] Processing NODE_10936_length_287_cov_2.885542:1-287 [pilon] NODE_4524_length_659_cov_18.529740:1-659 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 214, Coverage: 26, minDepth: 7 [pilon] Confirmed 497 of 659 bases (75.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4524_length_659_cov_18.529740:1-659 [pilon] Processing NODE_6235_length_522_cov_12.496259:1-522 [pilon] NODE_10443_length_306_cov_23.270270:1-306 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 63, Coverage: 5, minDepth: 5 [pilon] Confirmed 139 of 306 bases (45.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10443_length_306_cov_23.270270:1-306 [pilon] Processing NODE_6661_length_493_cov_1.344086:1-493 [pilon] NODE_14990_length_243_cov_5.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14990_length_243_cov_5.557377:1-243 [pilon] Processing NODE_2850_length_902_cov_9.279129:1-902 [pilon] NODE_14425_length_243_cov_10.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14425_length_243_cov_10.877049:1-243 [pilon] Processing NODE_4996_length_619_cov_0.987952:1-619 [pilon] NODE_2629_length_941_cov_18.665854:1-941 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 387, Coverage: 29, minDepth: 7 [pilon] Confirmed 723 of 941 bases (76.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2629_length_941_cov_18.665854:1-941 [pilon] Processing NODE_7455_length_446_cov_0.750769:1-446 [pilon] NODE_9936_length_328_cov_17.246377:1-328 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 83, Coverage: 5, minDepth: 5 [pilon] Confirmed 169 of 328 bases (51.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9936_length_328_cov_17.246377:1-328 [pilon] Processing NODE_7220_length_459_cov_9.254438:1-459 [pilon] NODE_9601_length_342_cov_11.932127:1-342 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 62, Coverage: 6, minDepth: 5 [pilon] Confirmed 167 of 342 bases (48.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9601_length_342_cov_11.932127:1-342 [pilon] Processing NODE_15025_length_243_cov_5.139344:1-243 [pilon] NODE_3438_length_793_cov_9.717262:1-793 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 168, Coverage: 21, minDepth: 5 [pilon] Confirmed 618 of 793 bases (77.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3438_length_793_cov_9.717262:1-793 [pilon] Processing NODE_2150_length_1046_cov_13.571892:1-1046 [pilon] NODE_9634_length_340_cov_11.986301:1-340 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 59, Coverage: 7, minDepth: 5 [pilon] Confirmed 201 of 340 bases (59.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9634_length_340_cov_11.986301:1-340 [pilon] Processing NODE_6429_length_508_cov_6.736434:1-508 [pilon] NODE_7953_length_420_cov_16.414716:1-420 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 125, Coverage: 17, minDepth: 5 [pilon] Confirmed 295 of 420 bases (70.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7953_length_420_cov_16.414716:1-420 [pilon] Processing NODE_11205_length_276_cov_10.496774:1-276 [pilon] NODE_4203_length_693_cov_42.622378:1-693 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 573, Coverage: 77, minDepth: 19 [pilon] Confirmed 541 of 693 bases (78.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4203_length_693_cov_42.622378:1-693 [pilon] Processing NODE_14987_length_243_cov_5.614754:1-243 [pilon] NODE_11405_length_267_cov_17.246575:1-267 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 48, Coverage: 4, minDepth: 5 [pilon] Confirmed 126 of 267 bases (47.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11405_length_267_cov_17.246575:1-267 [pilon] Processing NODE_1698_length_1180_cov_23.690274:1-1180 [pilon] NODE_3762_length_746_cov_1.771200:1-746 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 393 of 746 bases (52.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3762_length_746_cov_1.771200:1-746 [pilon] Processing NODE_2398_length_990_cov_32.148446:1-990 [pilon] NODE_11637_length_258_cov_21.343066:1-258 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 207 of 258 bases (80.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11637_length_258_cov_21.343066:1-258 [pilon] Processing NODE_8265_length_405_cov_63.718310:1-405 [pilon] NODE_1717_length_1175_cov_7.634725:1-1175 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 176, Coverage: 13, minDepth: 5 [pilon] Confirmed 981 of 1175 bases (83.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1717_length_1175_cov_7.634725:1-1175 [pilon] Processing NODE_8461_length_396_cov_15.229091:1-396 [pilon] NODE_9194_length_357_cov_27.906780:1-357 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 144, Coverage: 17, minDepth: 5 [pilon] Confirmed 277 of 357 bases (77.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9194_length_357_cov_27.906780:1-357 [pilon] Processing NODE_6134_length_529_cov_22.012255:1-529 [pilon] NODE_3315_length_812_cov_44.063676:1-812 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 716, Coverage: 90, minDepth: 23 [pilon] Confirmed 598 of 812 bases (73.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3315_length_812_cov_44.063676:1-812 [pilon] Processing NODE_9104_length_361_cov_18.820833:1-361 [pilon] NODE_6661_length_493_cov_1.344086:1-493 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 19, Coverage: 3, minDepth: 5 [pilon] Confirmed 184 of 493 bases (37.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6661_length_493_cov_1.344086:1-493 [pilon] Processing NODE_7606_length_437_cov_24.958861:1-437 [pilon] NODE_13041_length_243_cov_22.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13041_length_243_cov_22.524590:1-243 [pilon] Processing NODE_3005_length_872_cov_8.952064:1-872 [pilon] NODE_11074_length_280_cov_17.465409:1-280 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 54, Coverage: 5, minDepth: 5 [pilon] Confirmed 135 of 280 bases (48.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11074_length_280_cov_17.465409:1-280 [pilon] Processing NODE_7088_length_465_cov_29.688953:1-465 [pilon] NODE_3856_length_734_cov_0.704731:1-734 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 16, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 734 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3856_length_734_cov_0.704731:1-734 [pilon] Processing NODE_5471_length_579_cov_20.048035:1-579 [pilon] NODE_9810_length_333_cov_27.320755:1-333 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 136, Coverage: 21, minDepth: 5 [pilon] Confirmed 275 of 333 bases (82.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9810_length_333_cov_27.320755:1-333 [pilon] Processing NODE_6004_length_540_cov_19.291169:1-540 [pilon] NODE_12524_length_243_cov_28.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12524_length_243_cov_28.762295:1-243 [pilon] Processing NODE_12638_length_243_cov_27.032787:1-243 [pilon] NODE_11192_length_276_cov_16.219355:1-276 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 64, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11192_length_276_cov_16.219355:1-276 [pilon] Processing NODE_8676_length_384_cov_11.197719:1-384 [pilon] NODE_7220_length_459_cov_9.254438:1-459 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 68, Coverage: 4, minDepth: 5 [pilon] Confirmed 192 of 459 bases (41.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7220_length_459_cov_9.254438:1-459 [pilon] Processing NODE_10604_length_300_cov_33.100559:1-300 [pilon] NODE_15025_length_243_cov_5.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15025_length_243_cov_5.139344:1-243 [pilon] Processing NODE_2874_length_898_cov_27.261261:1-898 [pilon] NODE_14223_length_243_cov_12.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14223_length_243_cov_12.393443:1-243 [pilon] Processing NODE_9881_length_330_cov_28.583732:1-330 [pilon] NODE_5353_length_588_cov_3.584582:1-588 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 38, Coverage: 8, minDepth: 5 [pilon] Confirmed 378 of 588 bases (64.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5353_length_588_cov_3.584582:1-588 [pilon] Processing NODE_2450_length_977_cov_21.468458:1-977 [pilon] NODE_4832_length_632_cov_3.074364:1-632 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 47, Coverage: 10, minDepth: 5 [pilon] Confirmed 483 of 632 bases (76.42%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4832_length_632_cov_3.074364:1-632 [pilon] Processing NODE_10862_length_290_cov_8.869822:1-290 [pilon] NODE_6235_length_522_cov_12.496259:1-522 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 121, Coverage: 13, minDepth: 5 [pilon] Confirmed 268 of 522 bases (51.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6235_length_522_cov_12.496259:1-522 [pilon] NODE_10936_length_287_cov_2.885542:1-287 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 22 of 287 bases (7.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10936_length_287_cov_2.885542:1-287 [pilon] Processing NODE_1906_length_1111_cov_6.140404:1-1111 [pilon] Processing NODE_9555_length_344_cov_12.748879:1-344 [pilon] NODE_2150_length_1046_cov_13.571892:1-1046 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 313, Coverage: 30, minDepth: 8 [pilon] Confirmed 734 of 1046 bases (70.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2150_length_1046_cov_13.571892:1-1046 [pilon] Processing NODE_4590_length_654_cov_18.249531:1-654 [pilon] NODE_2850_length_902_cov_9.279129:1-902 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 330, Coverage: 48, minDepth: 12 [pilon] Confirmed 579 of 902 bases (64.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2850_length_902_cov_9.279129:1-902 [pilon] Processing NODE_9063_length_363_cov_23.128099:1-363 [pilon] NODE_4996_length_619_cov_0.987952:1-619 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 22, Coverage: 3, minDepth: 5 [pilon] Confirmed 224 of 619 bases (36.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4996_length_619_cov_0.987952:1-619 [pilon] Processing NODE_1364_length_1311_cov_20.141176:1-1311 [pilon] NODE_7455_length_446_cov_0.750769:1-446 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 446 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7455_length_446_cov_0.750769:1-446 [pilon] Processing NODE_8034_length_417_cov_4.689189:1-417 [pilon] NODE_6429_length_508_cov_6.736434:1-508 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 57, Coverage: 8, minDepth: 5 [pilon] Confirmed 343 of 508 bases (67.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6429_length_508_cov_6.736434:1-508 [pilon] Processing NODE_14759_length_243_cov_8.049180:1-243 [pilon] NODE_11205_length_276_cov_10.496774:1-276 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 43, Coverage: 3, minDepth: 5 [pilon] Confirmed 80 of 276 bases (28.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11205_length_276_cov_10.496774:1-276 [pilon] Processing NODE_4678_length_645_cov_22.875954:1-645 [pilon] NODE_2398_length_990_cov_32.148446:1-990 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 738, Coverage: 46, minDepth: 12 [pilon] Confirmed 848 of 990 bases (85.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2398_length_990_cov_32.148446:1-990 [pilon] Processing NODE_6696_length_490_cov_52.644986:1-490 [pilon] NODE_14987_length_243_cov_5.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14987_length_243_cov_5.614754:1-243 [pilon] Processing NODE_12074_length_244_cov_34.325203:1-244 [pilon] NODE_8265_length_405_cov_63.718310:1-405 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 421, Coverage: 81, minDepth: 20 [pilon] Confirmed 370 of 405 bases (91.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8265_length_405_cov_63.718310:1-405 [pilon] Processing NODE_12970_length_243_cov_23.245902:1-243 [pilon] NODE_5471_length_579_cov_20.048035:1-579 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 203, Coverage: 23, minDepth: 6 [pilon] Confirmed 412 of 579 bases (71.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5471_length_579_cov_20.048035:1-579 [pilon] Processing NODE_11605_length_260_cov_7.172662:1-260 [pilon] NODE_6134_length_529_cov_22.012255:1-529 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 231, Coverage: 24, minDepth: 6 [pilon] Confirmed 374 of 529 bases (70.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6134_length_529_cov_22.012255:1-529 [pilon] Processing NODE_1877_length_1120_cov_23.280280:1-1120 [pilon] NODE_8461_length_396_cov_15.229091:1-396 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 98, Coverage: 10, minDepth: 5 [pilon] Confirmed 198 of 396 bases (50.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8461_length_396_cov_15.229091:1-396 [pilon] Processing NODE_11946_length_247_cov_28.674603:1-247 [pilon] NODE_9104_length_361_cov_18.820833:1-361 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 108, Coverage: 18, minDepth: 5 [pilon] Confirmed 278 of 361 bases (77.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9104_length_361_cov_18.820833:1-361 [pilon] Processing NODE_5286_length_594_cov_1.365751:1-594 [pilon] NODE_1698_length_1180_cov_23.690274:1-1180 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 771, Coverage: 74, minDepth: 19 [pilon] Confirmed 974 of 1180 bases (82.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1698_length_1180_cov_23.690274:1-1180 [pilon] Processing NODE_6292_length_518_cov_31.329975:1-518 [pilon] NODE_6004_length_540_cov_19.291169:1-540 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 156, Coverage: 19, minDepth: 5 [pilon] Confirmed 371 of 540 bases (68.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6004_length_540_cov_19.291169:1-540 [pilon] Processing NODE_8880_length_372_cov_39.035857:1-372 [pilon] NODE_7088_length_465_cov_29.688953:1-465 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 264, Coverage: 24, minDepth: 6 [pilon] Confirmed 310 of 465 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7088_length_465_cov_29.688953:1-465 [pilon] Processing NODE_14710_length_243_cov_8.491803:1-243 [pilon] NODE_10604_length_300_cov_33.100559:1-300 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 131, Coverage: 5, minDepth: 5 [pilon] Confirmed 151 of 300 bases (50.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10604_length_300_cov_33.100559:1-300 [pilon] NODE_3005_length_872_cov_8.952064:1-872 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 218, Coverage: 25, minDepth: 6 [pilon] Confirmed 646 of 872 bases (74.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3005_length_872_cov_8.952064:1-872 [pilon] Processing NODE_5274_length_594_cov_39.431290:1-594 [pilon] Processing NODE_2104_length_1058_cov_1.228388:1-1058 [pilon] NODE_12638_length_243_cov_27.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12638_length_243_cov_27.032787:1-243 [pilon] Processing NODE_503_length_1911_cov_3.513408:1-1911 [pilon] NODE_8676_length_384_cov_11.197719:1-384 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 75, Coverage: 10, minDepth: 5 [pilon] Confirmed 231 of 384 bases (60.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8676_length_384_cov_11.197719:1-384 [pilon] Processing NODE_12655_length_243_cov_26.778689:1-243 [pilon] NODE_7606_length_437_cov_24.958861:1-437 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 174, Coverage: 21, minDepth: 5 [pilon] Confirmed 312 of 437 bases (71.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7606_length_437_cov_24.958861:1-437 [pilon] Processing NODE_1630_length_1206_cov_1.157604:1-1206 [pilon] NODE_9063_length_363_cov_23.128099:1-363 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 118, Coverage: 11, minDepth: 5 [pilon] Confirmed 248 of 363 bases (68.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9063_length_363_cov_23.128099:1-363 [pilon] NODE_1906_length_1111_cov_6.140404:1-1111 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 139, Coverage: 15, minDepth: 5 [pilon] Confirmed 863 of 1111 bases (77.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1906_length_1111_cov_6.140404:1-1111 [pilon] Processing NODE_11283_length_273_cov_9.940789:1-273 [pilon] NODE_10862_length_290_cov_8.869822:1-290 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 186 of 290 bases (64.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10862_length_290_cov_8.869822:1-290 [pilon] Processing NODE_6865_length_480_cov_6.933148:1-480 [pilon] NODE_9881_length_330_cov_28.583732:1-330 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 108, Coverage: 7, minDepth: 5 [pilon] Confirmed 162 of 330 bases (49.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9881_length_330_cov_28.583732:1-330 [pilon] Processing NODE_2996_length_874_cov_1.921647:1-874 [pilon] NODE_2450_length_977_cov_21.468458:1-977 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 477, Coverage: 41, minDepth: 10 [pilon] Confirmed 785 of 977 bases (80.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2450_length_977_cov_21.468458:1-977 [pilon] Processing NODE_8876_length_373_cov_12.376984:1-373 [pilon] NODE_2874_length_898_cov_27.261261:1-898 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 526, Coverage: 58, minDepth: 15 [pilon] Confirmed 712 of 898 bases (79.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2874_length_898_cov_27.261261:1-898 [pilon] Processing NODE_4667_length_647_cov_1.245247:1-647 [pilon] NODE_8034_length_417_cov_4.689189:1-417 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 52, Coverage: 4, minDepth: 5 [pilon] Confirmed 178 of 417 bases (42.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8034_length_417_cov_4.689189:1-417 [pilon] Processing NODE_2549_length_957_cov_2.470096:1-957 [pilon] NODE_9555_length_344_cov_12.748879:1-344 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 65, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 344 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9555_length_344_cov_12.748879:1-344 [pilon] Processing NODE_10983_length_285_cov_14.756098:1-285 [pilon] NODE_1364_length_1311_cov_20.141176:1-1311 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 476, Coverage: 35, minDepth: 9 [pilon] Confirmed 1045 of 1311 bases (79.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1364_length_1311_cov_20.141176:1-1311 [pilon] Processing NODE_7214_length_459_cov_20.775148:1-459 [pilon] NODE_4590_length_654_cov_18.249531:1-654 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 238, Coverage: 31, minDepth: 8 [pilon] Confirmed 460 of 654 bases (70.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4590_length_654_cov_18.249531:1-654 [pilon] Processing NODE_11161_length_277_cov_9.923077:1-277 [pilon] NODE_4678_length_645_cov_22.875954:1-645 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 239, Coverage: 35, minDepth: 9 [pilon] Confirmed 487 of 645 bases (75.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4678_length_645_cov_22.875954:1-645 [pilon] Processing NODE_6127_length_530_cov_0.811736:1-530 [pilon] NODE_14759_length_243_cov_8.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14759_length_243_cov_8.049180:1-243 [pilon] Processing NODE_12872_length_243_cov_24.278689:1-243 [pilon] NODE_8880_length_372_cov_39.035857:1-372 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 210, Coverage: 21, minDepth: 5 [pilon] Confirmed 244 of 372 bases (65.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8880_length_372_cov_39.035857:1-372 [pilon] Processing NODE_1458_length_1278_cov_16.684529:1-1278 [pilon] NODE_1877_length_1120_cov_23.280280:1-1120 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 590, Coverage: 36, minDepth: 9 [pilon] Confirmed 915 of 1120 bases (81.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1877_length_1120_cov_23.280280:1-1120 [pilon] Processing NODE_13595_length_243_cov_17.549180:1-243 [pilon] NODE_12970_length_243_cov_23.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12970_length_243_cov_23.245902:1-243 [pilon] Processing NODE_2837_length_904_cov_12.914432:1-904 [pilon] NODE_6696_length_490_cov_52.644986:1-490 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 449, Coverage: 48, minDepth: 12 [pilon] Confirmed 340 of 490 bases (69.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6696_length_490_cov_52.644986:1-490 [pilon] Processing NODE_6713_length_489_cov_22.597826:1-489 [pilon] NODE_12074_length_244_cov_34.325203:1-244 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 76, Coverage: 4, minDepth: 5 [pilon] Confirmed 116 of 244 bases (47.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12074_length_244_cov_34.325203:1-244 [pilon] Processing NODE_9743_length_336_cov_21.130233:1-336 [pilon] NODE_11283_length_273_cov_9.940789:1-273 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 34, Coverage: 5, minDepth: 5 [pilon] Confirmed 136 of 273 bases (49.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11283_length_273_cov_9.940789:1-273 [pilon] Processing NODE_12938_length_243_cov_23.565574:1-243 [pilon] NODE_5274_length_594_cov_39.431290:1-594 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 431, Coverage: 76, minDepth: 19 [pilon] Confirmed 498 of 594 bases (83.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5274_length_594_cov_39.431290:1-594 [pilon] Processing NODE_3883_length_730_cov_7.756979:1-730 [pilon] NODE_11605_length_260_cov_7.172662:1-260 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 38, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 260 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11605_length_260_cov_7.172662:1-260 [pilon] Processing NODE_1799_length_1146_cov_33.501463:1-1146 [pilon] NODE_5286_length_594_cov_1.365751:1-594 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 257 of 594 bases (43.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5286_length_594_cov_1.365751:1-594 [pilon] Processing NODE_3041_length_866_cov_14.452349:1-866 [pilon] NODE_6292_length_518_cov_31.329975:1-518 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 248, Coverage: 37, minDepth: 9 [pilon] Confirmed 454 of 518 bases (87.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6292_length_518_cov_31.329975:1-518 [pilon] Processing NODE_7928_length_421_cov_34.780000:1-421 [pilon] NODE_14710_length_243_cov_8.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14710_length_243_cov_8.491803:1-243 [pilon] Processing NODE_5230_length_598_cov_26.280922:1-598 [pilon] NODE_11946_length_247_cov_28.674603:1-247 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 85, Coverage: 6, minDepth: 5 [pilon] Confirmed 175 of 247 bases (70.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11946_length_247_cov_28.674603:1-247 [pilon] Processing NODE_11794_length_253_cov_13.825758:1-253 [pilon] NODE_503_length_1911_cov_3.513408:1-1911 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 174, Coverage: 12, minDepth: 5 [pilon] Confirmed 1592 of 1911 bases (83.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_503_length_1911_cov_3.513408:1-1911 [pilon] Processing NODE_9424_length_349_cov_10.723684:1-349 [pilon] NODE_7214_length_459_cov_20.775148:1-459 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 155, Coverage: 23, minDepth: 6 [pilon] Confirmed 334 of 459 bases (72.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7214_length_459_cov_20.775148:1-459 [pilon] Processing NODE_11031_length_282_cov_17.832298:1-282 [pilon] NODE_2104_length_1058_cov_1.228388:1-1058 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 320 of 1058 bases (30.25%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2104_length_1058_cov_1.228388:1-1058 [pilon] Processing NODE_8661_length_384_cov_19.794677:1-384 [pilon] NODE_12655_length_243_cov_26.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12655_length_243_cov_26.778689:1-243 [pilon] Processing NODE_5020_length_617_cov_8.812500:1-617 [pilon] NODE_2996_length_874_cov_1.921647:1-874 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 52, Coverage: 7, minDepth: 5 [pilon] Confirmed 689 of 874 bases (78.83%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2996_length_874_cov_1.921647:1-874 [pilon] Processing NODE_1449_length_1280_cov_20.987058:1-1280 [pilon] NODE_1630_length_1206_cov_1.157604:1-1206 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 48, Coverage: 5, minDepth: 5 [pilon] Confirmed 499 of 1206 bases (41.38%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1630_length_1206_cov_1.157604:1-1206 [pilon] Processing NODE_6276_length_519_cov_24.464824:1-519 [pilon] NODE_6865_length_480_cov_6.933148:1-480 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 47, Coverage: 7, minDepth: 5 [pilon] Confirmed 225 of 480 bases (46.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6865_length_480_cov_6.933148:1-480 [pilon] Processing NODE_13220_length_243_cov_20.893443:1-243 [pilon] NODE_8876_length_373_cov_12.376984:1-373 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 73, Coverage: 6, minDepth: 5 [pilon] Confirmed 186 of 373 bases (49.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8876_length_373_cov_12.376984:1-373 [pilon] Processing NODE_2905_length_892_cov_0.944228:1-892 [pilon] NODE_4667_length_647_cov_1.245247:1-647 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 208 of 647 bases (32.15%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4667_length_647_cov_1.245247:1-647 [pilon] Processing NODE_8504_length_393_cov_33.150735:1-393 [pilon] NODE_10983_length_285_cov_14.756098:1-285 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 63, Coverage: 9, minDepth: 5 [pilon] Confirmed 192 of 285 bases (67.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10983_length_285_cov_14.756098:1-285 [pilon] Processing NODE_10663_length_299_cov_29.224719:1-299 [pilon] NODE_2549_length_957_cov_2.470096:1-957 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 57, Coverage: 7, minDepth: 5 [pilon] Confirmed 621 of 957 bases (64.89%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2549_length_957_cov_2.470096:1-957 [pilon] Processing NODE_4809_length_634_cov_1.754386:1-634 [pilon] NODE_12872_length_243_cov_24.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12872_length_243_cov_24.278689:1-243 [pilon] Processing NODE_6980_length_473_cov_1.090909:1-473 [pilon] NODE_11161_length_277_cov_9.923077:1-277 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 277 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11161_length_277_cov_9.923077:1-277 [pilon] Processing NODE_2875_length_898_cov_21.777349:1-898 [pilon] NODE_6713_length_489_cov_22.597826:1-489 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 171, Coverage: 22, minDepth: 6 [pilon] Confirmed 307 of 489 bases (62.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6713_length_489_cov_22.597826:1-489 [pilon] Processing NODE_1243_length_1368_cov_36.619086:1-1368 [pilon] NODE_1458_length_1278_cov_16.684529:1-1278 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 463, Coverage: 30, minDepth: 8 [pilon] Confirmed 1179 of 1278 bases (92.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1458_length_1278_cov_16.684529:1-1278 [pilon] Processing NODE_7015_length_470_cov_63.123209:1-470 [pilon] NODE_12938_length_243_cov_23.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12938_length_243_cov_23.565574:1-243 [pilon] Processing NODE_14253_length_243_cov_12.229508:1-243 [pilon] NODE_6127_length_530_cov_0.811736:1-530 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 43 of 530 bases (8.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6127_length_530_cov_0.811736:1-530 [pilon] Processing NODE_3468_length_789_cov_14.380240:1-789 [pilon] NODE_5230_length_598_cov_26.280922:1-598 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 254, Coverage: 34, minDepth: 9 [pilon] Confirmed 448 of 598 bases (74.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5230_length_598_cov_26.280922:1-598 [pilon] Processing NODE_3014_length_871_cov_0.778667:1-871 [pilon] NODE_11031_length_282_cov_17.832298:1-282 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 282 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11031_length_282_cov_17.832298:1-282 [pilon] Processing NODE_680_length_1719_cov_26.948686:1-1719 [pilon] NODE_13595_length_243_cov_17.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13595_length_243_cov_17.549180:1-243 [pilon] Processing NODE_14729_length_243_cov_8.352459:1-243 [pilon] NODE_2837_length_904_cov_12.914432:1-904 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 243, Coverage: 22, minDepth: 6 [pilon] Confirmed 592 of 904 bases (65.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2837_length_904_cov_12.914432:1-904 [pilon] Processing NODE_213_length_2462_cov_19.754806:1-2462 [pilon] NODE_9743_length_336_cov_21.130233:1-336 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 103, Coverage: 5, minDepth: 5 [pilon] Confirmed 141 of 336 bases (41.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9743_length_336_cov_21.130233:1-336 [pilon] Processing NODE_327_length_2171_cov_2.153171:1-2171 [pilon] NODE_7928_length_421_cov_34.780000:1-421 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 242, Coverage: 29, minDepth: 7 [pilon] Confirmed 358 of 421 bases (85.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7928_length_421_cov_34.780000:1-421 [pilon] Processing NODE_2397_length_991_cov_1.271264:1-991 [pilon] NODE_3883_length_730_cov_7.756979:1-730 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 119, Coverage: 21, minDepth: 5 [pilon] Confirmed 439 of 730 bases (60.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3883_length_730_cov_7.756979:1-730 [pilon] Processing NODE_8537_length_392_cov_21.479705:1-392 [pilon] NODE_11794_length_253_cov_13.825758:1-253 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 37, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 253 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11794_length_253_cov_13.825758:1-253 [pilon] Processing NODE_7585_length_438_cov_25.220820:1-438 [pilon] NODE_3041_length_866_cov_14.452349:1-866 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 241, Coverage: 25, minDepth: 6 [pilon] Confirmed 752 of 866 bases (86.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3041_length_866_cov_14.452349:1-866 [pilon] Processing NODE_10927_length_288_cov_6.257485:1-288 [pilon] NODE_6980_length_473_cov_1.090909:1-473 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 147 of 473 bases (31.08%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6980_length_473_cov_1.090909:1-473 [pilon] Processing NODE_12243_length_243_cov_34.901639:1-243 [pilon] NODE_13220_length_243_cov_20.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13220_length_243_cov_20.893443:1-243 [pilon] Processing NODE_1220_length_1380_cov_19.899921:1-1380 [pilon] NODE_1799_length_1146_cov_33.501463:1-1146 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 906, Coverage: 63, minDepth: 16 [pilon] Confirmed 898 of 1146 bases (78.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1799_length_1146_cov_33.501463:1-1146 [pilon] Processing NODE_13_length_5578_cov_17.287704:1-5578 [pilon] NODE_9424_length_349_cov_10.723684:1-349 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 54, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 349 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9424_length_349_cov_10.723684:1-349 [pilon] Processing NODE_14086_length_243_cov_13.565574:1-243 [pilon] NODE_8661_length_384_cov_19.794677:1-384 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 165 of 384 bases (42.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8661_length_384_cov_19.794677:1-384 [pilon] Processing NODE_14561_length_243_cov_9.819672:1-243 [pilon] NODE_5020_length_617_cov_8.812500:1-617 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 99, Coverage: 21, minDepth: 5 [pilon] Confirmed 502 of 617 bases (81.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5020_length_617_cov_8.812500:1-617 [pilon] Processing NODE_1064_length_1459_cov_4.857250:1-1459 [pilon] NODE_6276_length_519_cov_24.464824:1-519 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 233, Coverage: 28, minDepth: 7 [pilon] Confirmed 336 of 519 bases (64.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6276_length_519_cov_24.464824:1-519 [pilon] Processing NODE_11871_length_250_cov_9.465116:1-250 [pilon] NODE_1449_length_1280_cov_20.987058:1-1280 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 592, Coverage: 49, minDepth: 12 [pilon] Confirmed 1064 of 1280 bases (83.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1449_length_1280_cov_20.987058:1-1280 [pilon] Processing NODE_10568_length_303_cov_6.785714:1-303 [pilon] NODE_2905_length_892_cov_0.944228:1-892 log: [pilon] NODE_10663_length_299_cov_29.224719:1-299 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 97, Coverage: 6, minDepth: 5 [pilon] Confirmed 157 of 299 bases (52.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 25, Coverage: 3, minDepth: 5 [pilon] Confirmed 239 of 892 bases (26.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2905_length_892_cov_0.944228:1-892 [pilon] Finished processing NODE_10663_length_299_cov_29.224719:1-299 [pilon] Processing NODE_12078_length_244_cov_25.780488:1-244 [pilon] Processing NODE_5594_length_571_cov_2.364444:1-571 [pilon] NODE_8504_length_393_cov_33.150735:1-393 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 203, Coverage: 28, minDepth: 7 [pilon] Confirmed 329 of 393 bases (83.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8504_length_393_cov_33.150735:1-393 [pilon] Processing NODE_8071_length_414_cov_36.139932:1-414 [pilon] NODE_7015_length_470_cov_63.123209:1-470 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 496, Coverage: 80, minDepth: 20 [pilon] Confirmed 415 of 470 bases (88.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7015_length_470_cov_63.123209:1-470 [pilon] Processing NODE_847_length_1600_cov_2.358350:1-1600 [pilon] NODE_1243_length_1368_cov_36.619086:1-1368 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 1243, Coverage: 48, minDepth: 12 [pilon] Confirmed 1071 of 1368 bases (78.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1243_length_1368_cov_36.619086:1-1368 [pilon] Processing NODE_11930_length_249_cov_6.492188:1-249 [pilon] NODE_14253_length_243_cov_12.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14253_length_243_cov_12.229508:1-243 [pilon] Processing NODE_14979_length_243_cov_5.721311:1-243 [pilon] NODE_3014_length_871_cov_0.778667:1-871 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 20, Coverage: 2, minDepth: 5 [pilon] Confirmed 130 of 871 bases (14.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3014_length_871_cov_0.778667:1-871 [pilon] Processing NODE_14077_length_243_cov_13.647541:1-243 [pilon] NODE_4809_length_634_cov_1.754386:1-634 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 31, Coverage: 6, minDepth: 5 [pilon] Confirmed 421 of 634 bases (66.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4809_length_634_cov_1.754386:1-634 [pilon] Processing NODE_13435_length_243_cov_18.959016:1-243 [pilon] NODE_2875_length_898_cov_21.777349:1-898 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 423, Coverage: 39, minDepth: 10 [pilon] Confirmed 570 of 898 bases (63.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2875_length_898_cov_21.777349:1-898 [pilon] Processing NODE_1530_length_1249_cov_1.743794:1-1249 [pilon] NODE_680_length_1719_cov_26.948686:1-1719 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 1092, Coverage: 55, minDepth: 14 [pilon] Confirmed 1430 of 1719 bases (83.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_680_length_1719_cov_26.948686:1-1719 [pilon] Processing NODE_4369_length_674_cov_12.197107:1-674 [pilon] NODE_3468_length_789_cov_14.380240:1-789 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 229, Coverage: 24, minDepth: 6 [pilon] Confirmed 663 of 789 bases (84.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3468_length_789_cov_14.380240:1-789 [pilon] Processing NODE_760_length_1661_cov_23.073377:1-1661 [pilon] NODE_14729_length_243_cov_8.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14729_length_243_cov_8.352459:1-243 [pilon] Processing NODE_9442_length_348_cov_20.118943:1-348 [pilon] NODE_12243_length_243_cov_34.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12243_length_243_cov_34.901639:1-243 [pilon] Processing NODE_333_length_2151_cov_23.319212:1-2151 [pilon] NODE_213_length_2462_cov_19.754806:1-2462 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 1122, Coverage: 59, minDepth: 15 [pilon] Confirmed 1806 of 2462 bases (73.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_213_length_2462_cov_19.754806:1-2462 [pilon] Processing NODE_129_length_2824_cov_25.714391:1-2824 [pilon] NODE_2397_length_991_cov_1.271264:1-991 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 31, Coverage: 4, minDepth: 5 [pilon] Confirmed 318 of 991 bases (32.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2397_length_991_cov_1.271264:1-991 [pilon] Processing NODE_6944_length_474_cov_40.708215:1-474 [pilon] NODE_327_length_2171_cov_2.153171:1-2171 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 131, Coverage: 7, minDepth: 5 [pilon] Confirmed 1285 of 2171 bases (59.19%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_327_length_2171_cov_2.153171:1-2171 [pilon] Processing NODE_8207_length_408_cov_12.020906:1-408 [pilon] NODE_8537_length_392_cov_21.479705:1-392 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 131, Coverage: 15, minDepth: 5 [pilon] Confirmed 250 of 392 bases (63.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8537_length_392_cov_21.479705:1-392 [pilon] Processing NODE_8263_length_406_cov_0.473684:1-406 [pilon] NODE_7585_length_438_cov_25.220820:1-438 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 176, Coverage: 30, minDepth: 8 [pilon] Confirmed 349 of 438 bases (79.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7585_length_438_cov_25.220820:1-438 [pilon] Processing NODE_6563_length_499_cov_6.801587:1-499 [pilon] NODE_847_length_1600_cov_2.358350:1-1600 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 103, Coverage: 8, minDepth: 5 [pilon] Confirmed 1132 of 1600 bases (70.75%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_10927_length_288_cov_6.257485:1-288 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 28, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10927_length_288_cov_6.257485:1-288 [pilon] Finished processing NODE_847_length_1600_cov_2.358350:1-1600 [pilon] Processing NODE_13707_length_243_cov_16.352459:1-243 [pilon] Processing NODE_13943_length_243_cov_14.565574:1-243 [pilon] NODE_8071_length_414_cov_36.139932:1-414 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 238, Coverage: 41, minDepth: 10 [pilon] Confirmed 357 of 414 bases (86.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8071_length_414_cov_36.139932:1-414 [pilon] Processing NODE_491_length_1916_cov_29.046240:1-1916 [pilon] NODE_14086_length_243_cov_13.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14086_length_243_cov_13.565574:1-243 [pilon] Processing NODE_12378_length_243_cov_31.483607:1-243 [pilon] NODE_14561_length_243_cov_9.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14561_length_243_cov_9.819672:1-243 [pilon] Processing NODE_15018_length_243_cov_5.229508:1-243 [pilon] NODE_1220_length_1380_cov_19.899921:1-1380 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 587, Coverage: 38, minDepth: 10 [pilon] Confirmed 1171 of 1380 bases (84.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1220_length_1380_cov_19.899921:1-1380 [pilon] Processing NODE_7718_length_432_cov_1.649518:1-432 [pilon] NODE_1064_length_1459_cov_4.857250:1-1459 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 180, Coverage: 13, minDepth: 5 [pilon] Confirmed 1301 of 1459 bases (89.17%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1064_length_1459_cov_4.857250:1-1459 [pilon] Processing NODE_1631_length_1205_cov_28.175277:1-1205 [pilon] NODE_11871_length_250_cov_9.465116:1-250 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 23, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 250 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11871_length_250_cov_9.465116:1-250 [pilon] Processing NODE_11703_length_255_cov_41.104478:1-255 [pilon] NODE_10568_length_303_cov_6.785714:1-303 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 29, Coverage: 3, minDepth: 5 [pilon] Confirmed 59 of 303 bases (19.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10568_length_303_cov_6.785714:1-303 [pilon] Processing NODE_8084_length_414_cov_16.143345:1-414 [pilon] NODE_11930_length_249_cov_6.492188:1-249 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 63 of 249 bases (25.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11930_length_249_cov_6.492188:1-249 [pilon] Processing NODE_2147_length_1047_cov_9.550756:1-1047 [pilon] NODE_12078_length_244_cov_25.780488:1-244 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 87, Coverage: 5, minDepth: 5 [pilon] Confirmed 137 of 244 bases (56.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12078_length_244_cov_25.780488:1-244 [pilon] Processing NODE_13695_length_243_cov_16.434426:1-243 [pilon] NODE_14077_length_243_cov_13.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14077_length_243_cov_13.647541:1-243 [pilon] Processing NODE_3505_length_783_cov_0.898792:1-783 [pilon] NODE_5594_length_571_cov_2.364444:1-571 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 31, Coverage: 7, minDepth: 5 [pilon] Confirmed 307 of 571 bases (53.77%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5594_length_571_cov_2.364444:1-571 [pilon] Processing NODE_3802_length_740_cov_26.164782:1-740 [pilon] NODE_4369_length_674_cov_12.197107:1-674 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 160, Coverage: 28, minDepth: 7 [pilon] Confirmed 513 of 674 bases (76.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4369_length_674_cov_12.197107:1-674 [pilon] Processing NODE_3589_length_771_cov_0.700000:1-771 [pilon] NODE_14979_length_243_cov_5.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14979_length_243_cov_5.721311:1-243 [pilon] Processing NODE_7232_length_458_cov_35.445104:1-458 [pilon] NODE_1530_length_1249_cov_1.743794:1-1249 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 60, Coverage: 6, minDepth: 5 [pilon] Confirmed 634 of 1249 bases (50.76%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1530_length_1249_cov_1.743794:1-1249 [pilon] Processing NODE_12780_length_243_cov_25.245902:1-243 [pilon] NODE_13_length_5578_cov_17.287704:1-5578 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 2208, Coverage: 50, minDepth: 13 [pilon] Confirmed 4849 of 5578 bases (86.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13_length_5578_cov_17.287704:1-5578 [pilon] Processing NODE_7183_length_460_cov_47.746313:1-460 [pilon] NODE_13435_length_243_cov_18.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13435_length_243_cov_18.959016:1-243 [pilon] Processing NODE_12234_length_243_cov_35.229508:1-243 [pilon] NODE_333_length_2151_cov_23.319212:1-2151 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 1130, Coverage: 46, minDepth: 12 [pilon] Confirmed 1996 of 2151 bases (92.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_333_length_2151_cov_23.319212:1-2151 [pilon] Processing NODE_7047_length_468_cov_15.452450:1-468 [pilon] NODE_13943_length_243_cov_14.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13943_length_243_cov_14.565574:1-243 [pilon] Processing NODE_1020_length_1485_cov_15.201613:1-1485 [pilon] NODE_491_length_1916_cov_29.046240:1-1916 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 1177, Coverage: 68, minDepth: 17 [pilon] Confirmed 1688 of 1916 bases (88.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_491_length_1916_cov_29.046240:1-1916 [pilon] Processing NODE_7381_length_449_cov_24.527439:1-449 [pilon] NODE_9442_length_348_cov_20.118943:1-348 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 112, Coverage: 6, minDepth: 5 [pilon] Confirmed 184 of 348 bases (52.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9442_length_348_cov_20.118943:1-348 [pilon] Processing NODE_14784_length_243_cov_7.860656:1-243 [pilon] NODE_760_length_1661_cov_23.073377:1-1661 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 835, Coverage: 52, minDepth: 13 [pilon] Confirmed 1529 of 1661 bases (92.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_760_length_1661_cov_23.073377:1-1661 [pilon] Processing NODE_10827_length_291_cov_22.164706:1-291 [pilon] NODE_8263_length_406_cov_0.473684:1-406 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 406 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8263_length_406_cov_0.473684:1-406 [pilon] Processing NODE_695_length_1706_cov_29.847950:1-1706 [pilon] NODE_6563_length_499_cov_6.801587:1-499 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 59, Coverage: 5, minDepth: 5 [pilon] Confirmed 224 of 499 bases (44.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6563_length_499_cov_6.801587:1-499 [pilon] NODE_3505_length_783_cov_0.898792:1-783 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 183 of 783 bases (23.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3505_length_783_cov_0.898792:1-783 [pilon] Processing NODE_11922_length_249_cov_11.890625:1-249 [pilon] Processing NODE_7702_length_432_cov_19.909968:1-432 [pilon] NODE_8207_length_408_cov_12.020906:1-408 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 67, Coverage: 4, minDepth: 5 [pilon] Confirmed 149 of 408 bases (36.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8207_length_408_cov_12.020906:1-408 [pilon] Processing NODE_2414_length_988_cov_5.904268:1-988 [pilon] NODE_6944_length_474_cov_40.708215:1-474 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 383, Coverage: 38, minDepth: 10 [pilon] Confirmed 228 of 474 bases (48.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6944_length_474_cov_40.708215:1-474 [pilon] Processing NODE_4242_length_689_cov_1.309859:1-689 [pilon] NODE_13707_length_243_cov_16.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13707_length_243_cov_16.352459:1-243 [pilon] Processing NODE_4462_length_665_cov_3.365809:1-665 [pilon] NODE_12378_length_243_cov_31.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12378_length_243_cov_31.483607:1-243 [pilon] Processing NODE_3256_length_823_cov_2.726496:1-823 [pilon] NODE_12780_length_243_cov_25.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12780_length_243_cov_25.245902:1-243 [pilon] Processing NODE_12346_length_243_cov_32.245902:1-243 [pilon] NODE_3589_length_771_cov_0.700000:1-771 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 16, Coverage: 2, minDepth: 5 [pilon] Confirmed 9 of 771 bases (1.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3589_length_771_cov_0.700000:1-771 [pilon] Processing NODE_1090_length_1446_cov_20.499623:1-1446 [pilon] NODE_129_length_2824_cov_25.714391:1-2824 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1721, Coverage: 54, minDepth: 14 [pilon] Confirmed 2617 of 2824 bases (92.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_129_length_2824_cov_25.714391:1-2824 [pilon] Processing NODE_1406_length_1296_cov_4.706383:1-1296 [pilon] NODE_11703_length_255_cov_41.104478:1-255 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 126, Coverage: 6, minDepth: 5 [pilon] Confirmed 160 of 255 bases (62.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11703_length_255_cov_41.104478:1-255 [pilon] Processing NODE_2059_length_1070_cov_0.629083:1-1070 [pilon] NODE_15018_length_243_cov_5.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15018_length_243_cov_5.229508:1-243 [pilon] Processing NODE_2224_length_1028_cov_6.533627:1-1028 [pilon] NODE_7718_length_432_cov_1.649518:1-432 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 206 of 432 bases (47.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7718_length_432_cov_1.649518:1-432 [pilon] Processing NODE_7372_length_450_cov_8.398176:1-450 [pilon] NODE_8084_length_414_cov_16.143345:1-414 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 112, Coverage: 10, minDepth: 5 [pilon] Confirmed 307 of 414 bases (74.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8084_length_414_cov_16.143345:1-414 [pilon] Processing NODE_3387_length_799_cov_36.954277:1-799 [pilon] NODE_13695_length_243_cov_16.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13695_length_243_cov_16.434426:1-243 [pilon] Processing NODE_3108_length_850_cov_13.677641:1-850 [pilon] NODE_1631_length_1205_cov_28.175277:1-1205 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 798, Coverage: 47, minDepth: 12 [pilon] Confirmed 1009 of 1205 bases (83.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1631_length_1205_cov_28.175277:1-1205 [pilon] Processing NODE_56_length_3537_cov_28.460187:1-3537 [pilon] NODE_7047_length_468_cov_15.452450:1-468 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 111, Coverage: 15, minDepth: 5 [pilon] Confirmed 320 of 468 bases (68.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7047_length_468_cov_15.452450:1-468 [pilon] Processing NODE_11936_length_248_cov_20.984252:1-248 [pilon] NODE_2147_length_1047_cov_9.550756:1-1047 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 257, Coverage: 17, minDepth: 5 [pilon] Confirmed 897 of 1047 bases (85.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2147_length_1047_cov_9.550756:1-1047 [pilon] Processing NODE_4854_length_630_cov_16.917485:1-630 [pilon] NODE_3802_length_740_cov_26.164782:1-740 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 456, Coverage: 42, minDepth: 11 [pilon] Confirmed 474 of 740 bases (64.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3802_length_740_cov_26.164782:1-740 [pilon] Processing NODE_15000_length_243_cov_5.385246:1-243 [pilon] NODE_7381_length_449_cov_24.527439:1-449 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 182, Coverage: 37, minDepth: 9 [pilon] Confirmed 371 of 449 bases (82.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7381_length_449_cov_24.527439:1-449 [pilon] Processing NODE_3222_length_830_cov_14.980254:1-830 [pilon] NODE_7232_length_458_cov_35.445104:1-458 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 290, Coverage: 45, minDepth: 11 [pilon] Confirmed 377 of 458 bases (82.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7232_length_458_cov_35.445104:1-458 [pilon] Processing NODE_15203_length_157_cov_37.944444:1-157 [pilon] NODE_1020_length_1485_cov_15.201613:1-1485 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 521, Coverage: 45, minDepth: 11 [pilon] Confirmed 1077 of 1485 bases (72.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1020_length_1485_cov_15.201613:1-1485 [pilon] Processing NODE_7672_length_434_cov_15.827476:1-434 [pilon] NODE_7183_length_460_cov_47.746313:1-460 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 357, Coverage: 68, minDepth: 17 [pilon] Confirmed 379 of 460 bases (82.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7183_length_460_cov_47.746313:1-460 [pilon] Processing NODE_7347_length_450_cov_34.525836:1-450 [pilon] NODE_12234_length_243_cov_35.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12234_length_243_cov_35.229508:1-243 [pilon] Processing NODE_602_length_1808_cov_10.705394:1-1808 [pilon] NODE_4462_length_665_cov_3.365809:1-665 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 58, Coverage: 11, minDepth: 5 [pilon] Confirmed 552 of 665 bases (83.01%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4462_length_665_cov_3.365809:1-665 [pilon] Processing NODE_575_length_1832_cov_1.923437:1-1832 [pilon] NODE_14784_length_243_cov_7.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14784_length_243_cov_7.860656:1-243 [pilon] Processing NODE_1649_length_1200_cov_25.695088:1-1200 [pilon] NODE_12346_length_243_cov_32.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12346_length_243_cov_32.245902:1-243 [pilon] Processing NODE_8159_length_411_cov_0.662069:1-411 [pilon] NODE_10827_length_291_cov_22.164706:1-291 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 88, Coverage: 6, minDepth: 5 [pilon] Confirmed 154 of 291 bases (52.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10827_length_291_cov_22.164706:1-291 [pilon] Processing NODE_5796_length_555_cov_29.926267:1-555 [pilon] NODE_2059_length_1070_cov_0.629083:1-1070 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 20, Coverage: 2, minDepth: 5 [pilon] Confirmed 104 of 1070 bases (9.72%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2059_length_1070_cov_0.629083:1-1070 [pilon] Processing NODE_2323_length_1005_cov_24.429864:1-1005 [pilon] NODE_11936_length_248_cov_20.984252:1-248 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 57, Coverage: 5, minDepth: 5 [pilon] Confirmed 132 of 248 bases (53.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11936_length_248_cov_20.984252:1-248 [pilon] Processing NODE_5460_length_580_cov_8.370370:1-580 [pilon] NODE_11922_length_249_cov_11.890625:1-249 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 31, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11922_length_249_cov_11.890625:1-249 [pilon] Processing NODE_5691_length_564_cov_2.568849:1-564 [pilon] NODE_4242_length_689_cov_1.309859:1-689 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 307 of 689 bases (44.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4242_length_689_cov_1.309859:1-689 [pilon] NODE_2414_length_988_cov_5.904268:1-988 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 120, Coverage: 15, minDepth: 5 [pilon] Confirmed 807 of 988 bases (81.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2414_length_988_cov_5.904268:1-988 [pilon] Processing NODE_14824_length_243_cov_7.459016:1-243 [pilon] Processing NODE_10739_length_296_cov_32.468571:1-296 [pilon] NODE_7702_length_432_cov_19.909968:1-432 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 131, Coverage: 22, minDepth: 6 [pilon] Confirmed 386 of 432 bases (89.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7702_length_432_cov_19.909968:1-432 [pilon] Processing NODE_4311_length_679_cov_38.039427:1-679 [pilon] NODE_695_length_1706_cov_29.847950:1-1706 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 1102, Coverage: 52, minDepth: 13 [pilon] Confirmed 1552 of 1706 bases (90.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_695_length_1706_cov_29.847950:1-1706 [pilon] Processing NODE_10992_length_285_cov_8.335366:1-285 [pilon] NODE_7672_length_434_cov_15.827476:1-434 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 127, Coverage: 17, minDepth: 5 [pilon] Confirmed 385 of 434 bases (88.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7672_length_434_cov_15.827476:1-434 [pilon] Processing NODE_9524_length_345_cov_14.616071:1-345 [pilon] NODE_3256_length_823_cov_2.726496:1-823 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 54, Coverage: 9, minDepth: 5 [pilon] Confirmed 543 of 823 bases (65.98%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3256_length_823_cov_2.726496:1-823 [pilon] Processing NODE_6598_length_497_cov_38.513298:1-497 [pilon] NODE_3222_length_830_cov_14.980254:1-830 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 256, Coverage: 32, minDepth: 8 [pilon] Confirmed 692 of 830 bases (83.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3222_length_830_cov_14.980254:1-830 [pilon] Processing NODE_15143_length_195_cov_6.000000:1-195 [pilon] NODE_1406_length_1296_cov_4.706383:1-1296 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 120, Coverage: 12, minDepth: 5 [pilon] Confirmed 1043 of 1296 bases (80.48%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1406_length_1296_cov_4.706383:1-1296 [pilon] Processing NODE_5703_length_563_cov_18.124434:1-563 [pilon] NODE_7372_length_450_cov_8.398176:1-450 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 70, Coverage: 13, minDepth: 5 [pilon] Confirmed 363 of 450 bases (80.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7372_length_450_cov_8.398176:1-450 [pilon] Processing NODE_9639_length_339_cov_58.550459:1-339 [pilon] NODE_2224_length_1028_cov_6.533627:1-1028 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 167, Coverage: 10, minDepth: 5 [pilon] Confirmed 735 of 1028 bases (71.50%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2224_length_1028_cov_6.533627:1-1028 [pilon] Processing NODE_8875_length_373_cov_14.015873:1-373 [pilon] NODE_1090_length_1446_cov_20.499623:1-1446 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 648, Coverage: 37, minDepth: 9 [pilon] Confirmed 1130 of 1446 bases (78.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1090_length_1446_cov_20.499623:1-1446 [pilon] Processing NODE_8930_length_369_cov_25.725806:1-369 [pilon] NODE_4854_length_630_cov_16.917485:1-630 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 220, Coverage: 23, minDepth: 6 [pilon] Confirmed 505 of 630 bases (80.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4854_length_630_cov_16.917485:1-630 [pilon] Processing NODE_4879_length_628_cov_45.218935:1-628 [pilon] NODE_3108_length_850_cov_13.677641:1-850 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 325, Coverage: 33, minDepth: 8 [pilon] Confirmed 781 of 850 bases (91.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3108_length_850_cov_13.677641:1-850 [pilon] Processing NODE_5786_length_556_cov_55.018391:1-556 [pilon] NODE_3387_length_799_cov_36.954277:1-799 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 596, Coverage: 74, minDepth: 19 [pilon] Confirmed 723 of 799 bases (90.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3387_length_799_cov_36.954277:1-799 [pilon] Processing NODE_8680_length_383_cov_72.000000:1-383 [pilon] NODE_575_length_1832_cov_1.923437:1-1832 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 102, Coverage: 7, minDepth: 5 [pilon] Confirmed 1326 of 1832 bases (72.38%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_575_length_1832_cov_1.923437:1-1832 [pilon] Processing NODE_13456_length_243_cov_18.786885:1-243 [pilon] NODE_15000_length_243_cov_5.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15000_length_243_cov_5.385246:1-243 [pilon] Processing NODE_13090_length_243_cov_22.057377:1-243 [pilon] NODE_15203_length_157_cov_37.944444:1-157 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 157 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15203_length_157_cov_37.944444:1-157 [pilon] Processing NODE_204_length_2483_cov_23.551651:1-2483 [pilon] NODE_7347_length_450_cov_34.525836:1-450 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 272, Coverage: 46, minDepth: 12 [pilon] Confirmed 350 of 450 bases (77.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7347_length_450_cov_34.525836:1-450 [pilon] Processing NODE_10678_length_299_cov_11.578652:1-299 [pilon] NODE_8159_length_411_cov_0.662069:1-411 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 85 of 411 bases (20.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8159_length_411_cov_0.662069:1-411 [pilon] Processing NODE_2413_length_988_cov_6.369089:1-988 [pilon] NODE_2323_length_1005_cov_24.429864:1-1005 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 619, Coverage: 22, minDepth: 6 [pilon] Confirmed 705 of 1005 bases (70.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2323_length_1005_cov_24.429864:1-1005 [pilon] Processing NODE_2456_length_976_cov_30.299415:1-976 [pilon] NODE_602_length_1808_cov_10.705394:1-1808 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 434, Coverage: 31, minDepth: 8 [pilon] Confirmed 1569 of 1808 bases (86.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_602_length_1808_cov_10.705394:1-1808 [pilon] Processing NODE_1715_length_1176_cov_2.304265:1-1176 [pilon] NODE_56_length_3537_cov_28.460187:1-3537 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 2170, Coverage: 49, minDepth: 12 [pilon] Confirmed 2703 of 3537 bases (76.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_56_length_3537_cov_28.460187:1-3537 [pilon] Processing NODE_13191_length_243_cov_21.188525:1-243 [pilon] NODE_1649_length_1200_cov_25.695088:1-1200 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 778, Coverage: 41, minDepth: 10 [pilon] Confirmed 950 of 1200 bases (79.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1649_length_1200_cov_25.695088:1-1200 [pilon] Processing NODE_8290_length_405_cov_11.119718:1-405 [pilon] NODE_9524_length_345_cov_14.616071:1-345 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 87, Coverage: 2, minDepth: 5 [pilon] Confirmed 113 of 345 bases (32.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9524_length_345_cov_14.616071:1-345 [pilon] Processing NODE_7035_length_469_cov_12.583333:1-469 [pilon] NODE_15143_length_195_cov_6.000000:1-195 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 195 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15143_length_195_cov_6.000000:1-195 [pilon] Processing NODE_12037_length_246_cov_9.024000:1-246 [pilon] NODE_5796_length_555_cov_29.926267:1-555 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 298, Coverage: 47, minDepth: 12 [pilon] Confirmed 466 of 555 bases (83.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5796_length_555_cov_29.926267:1-555 [pilon] Processing NODE_11418_length_267_cov_12.109589:1-267 [pilon] NODE_10992_length_285_cov_8.335366:1-285 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 285 bases (45.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10992_length_285_cov_8.335366:1-285 [pilon] Processing NODE_11005_length_284_cov_22.042945:1-284 [pilon] NODE_5691_length_564_cov_2.568849:1-564 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 31, Coverage: 6, minDepth: 5 [pilon] Confirmed 348 of 564 bases (61.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5691_length_564_cov_2.568849:1-564 [pilon] Processing NODE_10847_length_290_cov_44.603550:1-290 [pilon] NODE_5460_length_580_cov_8.370370:1-580 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 85, Coverage: 19, minDepth: 5 [pilon] Confirmed 457 of 580 bases (78.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5460_length_580_cov_8.370370:1-580 [pilon] Processing NODE_13222_length_243_cov_20.893443:1-243 [pilon] NODE_4311_length_679_cov_38.039427:1-679 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 515, Coverage: 69, minDepth: 17 [pilon] Confirmed 476 of 679 bases (70.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4311_length_679_cov_38.039427:1-679 [pilon] Processing NODE_2201_length_1033_cov_33.447368:1-1033 [pilon] NODE_14824_length_243_cov_7.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14824_length_243_cov_7.459016:1-243 [pilon] Processing NODE_11272_length_273_cov_12.532895:1-273 [pilon] NODE_10739_length_296_cov_32.468571:1-296 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 122, Coverage: 15, minDepth: 5 [pilon] Confirmed 256 of 296 bases (86.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10739_length_296_cov_32.468571:1-296 [pilon] Processing NODE_11540_length_262_cov_22.212766:1-262 [pilon] NODE_6598_length_497_cov_38.513298:1-497 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 337, Coverage: 45, minDepth: 11 [pilon] Confirmed 387 of 497 bases (77.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6598_length_497_cov_38.513298:1-497 [pilon] Processing NODE_803_length_1625_cov_9.599734:1-1625 [pilon] NODE_8875_length_373_cov_14.015873:1-373 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 83, Coverage: 16, minDepth: 5 [pilon] Confirmed 337 of 373 bases (90.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8875_length_373_cov_14.015873:1-373 [pilon] Processing NODE_7018_length_470_cov_32.309456:1-470 [pilon] NODE_5703_length_563_cov_18.124434:1-563 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 168, Coverage: 23, minDepth: 6 [pilon] Confirmed 490 of 563 bases (87.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5703_length_563_cov_18.124434:1-563 [pilon] Processing NODE_201_length_2496_cov_11.999579:1-2496 [pilon] NODE_2413_length_988_cov_6.369089:1-988 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 149, Coverage: 19, minDepth: 5 [pilon] Confirmed 680 of 988 bases (68.83%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2413_length_988_cov_6.369089:1-988 [pilon] Processing NODE_4743_length_639_cov_48.839768:1-639 [pilon] NODE_9639_length_339_cov_58.550459:1-339 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 289, Coverage: 37, minDepth: 9 [pilon] Confirmed 316 of 339 bases (93.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9639_length_339_cov_58.550459:1-339 [pilon] Processing NODE_6028_length_538_cov_13.112710:1-538 [pilon] NODE_8930_length_369_cov_25.725806:1-369 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 168, Coverage: 21, minDepth: 5 [pilon] Confirmed 326 of 369 bases (88.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8930_length_369_cov_25.725806:1-369 [pilon] Processing NODE_12237_length_243_cov_35.106557:1-243 [pilon] NODE_2456_length_976_cov_30.299415:1-976 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 576, Coverage: 51, minDepth: 13 [pilon] Confirmed 903 of 976 bases (92.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2456_length_976_cov_30.299415:1-976 [pilon] Processing NODE_15242_length_131_cov_21.500000:1-131 [pilon] NODE_8680_length_383_cov_72.000000:1-383 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 394, Coverage: 79, minDepth: 20 [pilon] Confirmed 329 of 383 bases (85.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8680_length_383_cov_72.000000:1-383 [pilon] Processing NODE_10112_length_321_cov_14.675000:1-321 [pilon] NODE_4879_length_628_cov_45.218935:1-628 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 577, Coverage: 66, minDepth: 17 [pilon] Confirmed 425 of 628 bases (67.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4879_length_628_cov_45.218935:1-628 [pilon] Processing NODE_8479_length_395_cov_21.507299:1-395 [pilon] NODE_5786_length_556_cov_55.018391:1-556 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 558, Coverage: 90, minDepth: 23 [pilon] Confirmed 483 of 556 bases (86.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5786_length_556_cov_55.018391:1-556 [pilon] Processing NODE_190_length_2541_cov_29.038430:1-2541 [pilon] NODE_13090_length_243_cov_22.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13090_length_243_cov_22.057377:1-243 [pilon] Processing NODE_2688_length_931_cov_17.017284:1-931 [pilon] NODE_13456_length_243_cov_18.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13456_length_243_cov_18.786885:1-243 [pilon] Processing NODE_2380_length_994_cov_24.017182:1-994 [pilon] NODE_10678_length_299_cov_11.578652:1-299 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 43, Coverage: 9, minDepth: 5 [pilon] Confirmed 227 of 299 bases (75.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10678_length_299_cov_11.578652:1-299 [pilon] Processing NODE_11139_length_279_cov_1.246835:1-279 [pilon] NODE_7035_length_469_cov_12.583333:1-469 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 104, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 469 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7035_length_469_cov_12.583333:1-469 [pilon] Processing NODE_13410_length_243_cov_19.180328:1-243 [pilon] NODE_12037_length_246_cov_9.024000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 25, Coverage: 3, minDepth: 5 [pilon] Confirmed 36 of 246 bases (14.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12037_length_246_cov_9.024000:1-246 [pilon] Processing NODE_7893_length_423_cov_16.380795:1-423 [pilon] NODE_204_length_2483_cov_23.551651:1-2483 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 1323, Coverage: 67, minDepth: 17 [pilon] Confirmed 2214 of 2483 bases (89.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_204_length_2483_cov_23.551651:1-2483 [pilon] Processing NODE_152_length_2710_cov_3.896485:1-2710 [pilon] NODE_13191_length_243_cov_21.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13191_length_243_cov_21.188525:1-243 [pilon] Processing NODE_10780_length_294_cov_16.919075:1-294 [pilon] NODE_1715_length_1176_cov_2.304265:1-1176 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 677 of 1176 bases (57.57%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1715_length_1176_cov_2.304265:1-1176 [pilon] Processing NODE_8947_length_369_cov_12.616935:1-369 [pilon] NODE_11005_length_284_cov_22.042945:1-284 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 79, Coverage: 7, minDepth: 5 [pilon] Confirmed 193 of 284 bases (67.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11005_length_284_cov_22.042945:1-284 [pilon] Processing NODE_12081_length_244_cov_20.780488:1-244 [pilon] NODE_8290_length_405_cov_11.119718:1-405 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 70, Coverage: 12, minDepth: 5 [pilon] Confirmed 294 of 405 bases (72.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8290_length_405_cov_11.119718:1-405 [pilon] Processing NODE_2584_length_948_cov_25.969770:1-948 [pilon] NODE_11418_length_267_cov_12.109589:1-267 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 40, Coverage: 2, minDepth: 5 [pilon] Confirmed 64 of 267 bases (23.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11418_length_267_cov_12.109589:1-267 [pilon] Processing NODE_3020_length_869_cov_25.387701:1-869 [pilon] NODE_4743_length_639_cov_48.839768:1-639 log: [pilon] frags shovill.bam: coverage 89 [pilon] Total Reads: 591, Coverage: 89, minDepth: 22 [pilon] Confirmed 580 of 639 bases (90.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4743_length_639_cov_48.839768:1-639 [pilon] Processing NODE_12242_length_243_cov_34.950820:1-243 [pilon] NODE_7018_length_470_cov_32.309456:1-470 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 258, Coverage: 24, minDepth: 6 [pilon] Confirmed 336 of 470 bases (71.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7018_length_470_cov_32.309456:1-470 [pilon] Processing NODE_12222_length_243_cov_35.639344:1-243 [pilon] NODE_201_length_2496_cov_11.999579:1-2496 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 849, Coverage: 40, minDepth: 10 [pilon] Confirmed 2022 of 2496 bases (81.01%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_201_length_2496_cov_11.999579:1-2496 [pilon] Processing NODE_3003_length_873_cov_6.900266:1-873 [pilon] NODE_13222_length_243_cov_20.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13222_length_243_cov_20.893443:1-243 [pilon] Processing NODE_10923_length_288_cov_8.886228:1-288 [pilon] NODE_10847_length_290_cov_44.603550:1-290 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 159, Coverage: 14, minDepth: 5 [pilon] Confirmed 200 of 290 bases (68.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10847_length_290_cov_44.603550:1-290 [pilon] Processing NODE_7350_length_450_cov_28.112462:1-450 [pilon] NODE_11540_length_262_cov_22.212766:1-262 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 73, Coverage: 12, minDepth: 5 [pilon] Confirmed 212 of 262 bases (80.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11540_length_262_cov_22.212766:1-262 [pilon] Processing NODE_15180_length_171_cov_5.840000:1-171 [pilon] NODE_11272_length_273_cov_12.532895:1-273 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 46, Coverage: 3, minDepth: 5 [pilon] Confirmed 91 of 273 bases (33.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11272_length_273_cov_12.532895:1-273 [pilon] Processing NODE_12984_length_243_cov_23.114754:1-243 [pilon] NODE_2201_length_1033_cov_33.447368:1-1033 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 751, Coverage: 77, minDepth: 19 [pilon] Confirmed 969 of 1033 bases (93.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2201_length_1033_cov_33.447368:1-1033 [pilon] Processing NODE_7580_length_438_cov_31.536278:1-438 [pilon] NODE_803_length_1625_cov_9.599734:1-1625 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 337, Coverage: 25, minDepth: 6 [pilon] Confirmed 925 of 1625 bases (56.92%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_803_length_1625_cov_9.599734:1-1625 [pilon] Processing NODE_11097_length_279_cov_28.639241:1-279 [pilon] NODE_6028_length_538_cov_13.112710:1-538 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 133, Coverage: 20, minDepth: 5 [pilon] Confirmed 461 of 538 bases (85.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6028_length_538_cov_13.112710:1-538 [pilon] Processing NODE_853_length_1594_cov_22.742023:1-1594 [pilon] NODE_13410_length_243_cov_19.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13410_length_243_cov_19.180328:1-243 [pilon] Processing NODE_5751_length_559_cov_39.652968:1-559 [pilon] NODE_15242_length_131_cov_21.500000:1-131 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 131 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15242_length_131_cov_21.500000:1-131 [pilon] Processing NODE_2021_length_1081_cov_3.140625:1-1081 [pilon] NODE_12237_length_243_cov_35.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 98, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12237_length_243_cov_35.106557:1-243 [pilon] Processing NODE_380_length_2076_cov_32.193862:1-2076 [pilon] NODE_7893_length_423_cov_16.380795:1-423 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 121, Coverage: 15, minDepth: 5 [pilon] Confirmed 287 of 423 bases (67.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7893_length_423_cov_16.380795:1-423 [pilon] Processing NODE_15243_length_130_cov_2.333333:1-130 [pilon] NODE_8479_length_395_cov_21.507299:1-395 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 143, Coverage: 21, minDepth: 5 [pilon] Confirmed 324 of 395 bases (82.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8479_length_395_cov_21.507299:1-395 [pilon] Processing NODE_8720_length_381_cov_19.292308:1-381 [pilon] NODE_10112_length_321_cov_14.675000:1-321 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 68, Coverage: 6, minDepth: 5 [pilon] Confirmed 155 of 321 bases (48.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10112_length_321_cov_14.675000:1-321 [pilon] Processing NODE_13885_length_243_cov_15.016393:1-243 [pilon] NODE_12081_length_244_cov_20.780488:1-244 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 51, Coverage: 4, minDepth: 5 [pilon] Confirmed 85 of 244 bases (34.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12081_length_244_cov_20.780488:1-244 [pilon] Processing NODE_4076_length_708_cov_12.316865:1-708 [pilon] NODE_2688_length_931_cov_17.017284:1-931 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 310, Coverage: 28, minDepth: 7 [pilon] Confirmed 733 of 931 bases (78.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2688_length_931_cov_17.017284:1-931 [pilon] Processing NODE_11914_length_249_cov_13.828125:1-249 [pilon] NODE_2380_length_994_cov_24.017182:1-994 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 543, Coverage: 37, minDepth: 9 [pilon] Confirmed 777 of 994 bases (78.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2380_length_994_cov_24.017182:1-994 [pilon] Processing NODE_7787_length_428_cov_19.400651:1-428 [pilon] NODE_11139_length_279_cov_1.246835:1-279 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11139_length_279_cov_1.246835:1-279 [pilon] Processing NODE_12887_length_243_cov_24.180328:1-243 [pilon] NODE_190_length_2541_cov_29.038430:1-2541 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 1426, Coverage: 39, minDepth: 10 [pilon] Confirmed 1484 of 2541 bases (58.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_190_length_2541_cov_29.038430:1-2541 [pilon] Processing NODE_6702_length_490_cov_11.571816:1-490 [pilon] NODE_12222_length_243_cov_35.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12222_length_243_cov_35.639344:1-243 [pilon] NODE_12242_length_243_cov_34.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12242_length_243_cov_34.950820:1-243 [pilon] Processing NODE_8194_length_408_cov_29.153310:1-408 [pilon] Processing NODE_6218_length_523_cov_11.589552:1-523 [pilon] NODE_3003_length_873_cov_6.900266:1-873 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 129, Coverage: 10, minDepth: 5 [pilon] Confirmed 384 of 873 bases (43.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3003_length_873_cov_6.900266:1-873 [pilon] Processing NODE_14101_length_243_cov_13.459016:1-243 [pilon] NODE_152_length_2710_cov_3.896485:1-2710 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 257, Coverage: 12, minDepth: 5 [pilon] Confirmed 2475 of 2710 bases (91.33%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_152_length_2710_cov_3.896485:1-2710 [pilon] Processing NODE_13571_length_243_cov_17.745902:1-243 [pilon] NODE_10780_length_294_cov_16.919075:1-294 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 57, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 294 bases (44.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10780_length_294_cov_16.919075:1-294 [pilon] Processing NODE_392_length_2061_cov_2.015979:1-2061 [pilon] NODE_8947_length_369_cov_12.616935:1-369 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 78, Coverage: 4, minDepth: 5 [pilon] Confirmed 131 of 369 bases (35.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8947_length_369_cov_12.616935:1-369 [pilon] Processing NODE_6356_length_513_cov_21.316327:1-513 [pilon] NODE_2584_length_948_cov_25.969770:1-948 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 589, Coverage: 73, minDepth: 18 [pilon] Confirmed 808 of 948 bases (85.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2584_length_948_cov_25.969770:1-948 [pilon] Processing NODE_2335_length_1004_cov_0.890147:1-1004 [pilon] NODE_3020_length_869_cov_25.387701:1-869 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 438, Coverage: 30, minDepth: 8 [pilon] Confirmed 739 of 869 bases (85.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3020_length_869_cov_25.387701:1-869 [pilon] Processing NODE_7079_length_466_cov_24.431884:1-466 [pilon] NODE_5751_length_559_cov_39.652968:1-559 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 405, Coverage: 59, minDepth: 15 [pilon] Confirmed 475 of 559 bases (84.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5751_length_559_cov_39.652968:1-559 [pilon] Processing NODE_5457_length_580_cov_22.531590:1-580 [pilon] NODE_10923_length_288_cov_8.886228:1-288 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10923_length_288_cov_8.886228:1-288 [pilon] Processing NODE_12724_length_243_cov_25.926230:1-243 [pilon] NODE_15243_length_130_cov_2.333333:1-130 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 130 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15243_length_130_cov_2.333333:1-130 [pilon] Processing NODE_9088_length_362_cov_25.091286:1-362 [pilon] NODE_7350_length_450_cov_28.112462:1-450 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 209, Coverage: 23, minDepth: 6 [pilon] Confirmed 308 of 450 bases (68.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7350_length_450_cov_28.112462:1-450 [pilon] Processing NODE_9151_length_360_cov_9.372385:1-360 [pilon] NODE_12984_length_243_cov_23.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12984_length_243_cov_23.114754:1-243 [pilon] Processing NODE_3394_length_799_cov_0.951327:1-799 [pilon] NODE_15180_length_171_cov_5.840000:1-171 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 171 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15180_length_171_cov_5.840000:1-171 [pilon] Processing NODE_8737_length_381_cov_5.946154:1-381 [pilon] NODE_4076_length_708_cov_12.316865:1-708 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 159, Coverage: 23, minDepth: 6 [pilon] Confirmed 571 of 708 bases (80.65%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4076_length_708_cov_12.316865:1-708 [pilon] Processing NODE_8083_length_414_cov_16.600683:1-414 [pilon] NODE_7580_length_438_cov_31.536278:1-438 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 207, Coverage: 36, minDepth: 9 [pilon] Confirmed 321 of 438 bases (73.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7580_length_438_cov_31.536278:1-438 [pilon] Processing NODE_14775_length_243_cov_7.959016:1-243 [pilon] NODE_11097_length_279_cov_28.639241:1-279 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 95, Coverage: 7, minDepth: 5 [pilon] Confirmed 190 of 279 bases (68.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11097_length_279_cov_28.639241:1-279 [pilon] Processing NODE_15225_length_143_cov_6.681818:1-143 [pilon] NODE_13885_length_243_cov_15.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13885_length_243_cov_15.016393:1-243 [pilon] Processing NODE_11962_length_246_cov_35.744000:1-246 [pilon] NODE_853_length_1594_cov_22.742023:1-1594 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 835, Coverage: 54, minDepth: 14 [pilon] Confirmed 1399 of 1594 bases (87.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_853_length_1594_cov_22.742023:1-1594 [pilon] Processing NODE_13697_length_243_cov_16.434426:1-243 [pilon] NODE_14101_length_243_cov_13.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14101_length_243_cov_13.459016:1-243 [pilon] Processing NODE_3713_length_753_cov_4.770570:1-753 [pilon] NODE_6218_length_523_cov_11.589552:1-523 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 92, Coverage: 17, minDepth: 5 [pilon] Confirmed 477 of 523 bases (91.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6218_length_523_cov_11.589552:1-523 [pilon] Processing NODE_9512_length_345_cov_20.486607:1-345 [pilon] NODE_8194_length_408_cov_29.153310:1-408 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 195, Coverage: 30, minDepth: 8 [pilon] Confirmed 287 of 408 bases (70.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8194_length_408_cov_29.153310:1-408 [pilon] Processing NODE_7643_length_435_cov_31.901274:1-435 [pilon] NODE_2021_length_1081_cov_3.140625:1-1081 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 86, Coverage: 10, minDepth: 5 [pilon] Confirmed 694 of 1081 bases (64.20%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2021_length_1081_cov_3.140625:1-1081 [pilon] Processing NODE_11842_length_252_cov_10.503817:1-252 [pilon] NODE_8720_length_381_cov_19.292308:1-381 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 116, Coverage: 14, minDepth: 5 [pilon] Confirmed 280 of 381 bases (73.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8720_length_381_cov_19.292308:1-381 [pilon] Processing NODE_6651_length_493_cov_42.975806:1-493 [pilon] NODE_11914_length_249_cov_13.828125:1-249 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 47, Coverage: 3, minDepth: 5 [pilon] Confirmed 47 of 249 bases (18.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11914_length_249_cov_13.828125:1-249 [pilon] Processing NODE_2745_length_919_cov_20.397243:1-919 [pilon] NODE_380_length_2076_cov_32.193862:1-2076 log: [pilon] frags shovill.bam: coverage 88 [pilon] Total Reads: 1472, Coverage: 88, minDepth: 22 [pilon] Confirmed 1610 of 2076 bases (77.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_380_length_2076_cov_32.193862:1-2076 [pilon] Processing NODE_8834_length_375_cov_18.295276:1-375 [pilon] NODE_7787_length_428_cov_19.400651:1-428 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 145, Coverage: 13, minDepth: 5 [pilon] Confirmed 253 of 428 bases (59.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7787_length_428_cov_19.400651:1-428 [pilon] Processing NODE_9650_length_339_cov_24.545872:1-339 [pilon] NODE_12887_length_243_cov_24.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12887_length_243_cov_24.180328:1-243 [pilon] NODE_6702_length_490_cov_11.571816:1-490 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 90, Coverage: 16, minDepth: 5 [pilon] Confirmed 397 of 490 bases (81.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6702_length_490_cov_11.571816:1-490 [pilon] Processing NODE_9415_length_349_cov_51.539474:1-349 [pilon] NODE_5457_length_580_cov_22.531590:1-580 log: [pilon] NODE_13571_length_243_cov_17.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13571_length_243_cov_17.745902:1-243 [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 231, Coverage: 40, minDepth: 10 [pilon] Confirmed 440 of 580 bases (75.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_15048_length_241_cov_12.816667:1-241 [pilon] Finished processing NODE_5457_length_580_cov_22.531590:1-580 [pilon] Processing NODE_9665_length_339_cov_16.458716:1-339 [pilon] NODE_9088_length_362_cov_25.091286:1-362 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 144, Coverage: 16, minDepth: 5 [pilon] Confirmed 323 of 362 bases (89.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9088_length_362_cov_25.091286:1-362 [pilon] Processing NODE_14806_length_243_cov_7.680328:1-243 [pilon] NODE_392_length_2061_cov_2.015979:1-2061 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 118, Coverage: 7, minDepth: 5 [pilon] Confirmed 1240 of 2061 bases (60.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_392_length_2061_cov_2.015979:1-2061 [pilon] Processing NODE_9131_length_360_cov_18.062762:1-360 [pilon] NODE_6356_length_513_cov_21.316327:1-513 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 202, Coverage: 34, minDepth: 9 [pilon] Confirmed 356 of 513 bases (69.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6356_length_513_cov_21.316327:1-513 [pilon] Processing NODE_12997_length_243_cov_22.934426:1-243 [pilon] NODE_8083_length_414_cov_16.600683:1-414 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 119, Coverage: 8, minDepth: 5 [pilon] Confirmed 239 of 414 bases (57.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8083_length_414_cov_16.600683:1-414 [pilon] Processing NODE_1611_length_1212_cov_28.555454:1-1212 [pilon] NODE_2335_length_1004_cov_0.890147:1-1004 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 29, Coverage: 3, minDepth: 5 [pilon] Confirmed 309 of 1004 bases (30.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2335_length_1004_cov_0.890147:1-1004 [pilon] Processing NODE_11153_length_277_cov_19.833333:1-277 [pilon] NODE_7079_length_466_cov_24.431884:1-466 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 208, Coverage: 35, minDepth: 9 [pilon] Confirmed 406 of 466 bases (87.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7079_length_466_cov_24.431884:1-466 [pilon] Processing NODE_12236_length_243_cov_35.147541:1-243 [pilon] NODE_12724_length_243_cov_25.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12724_length_243_cov_25.926230:1-243 [pilon] Processing NODE_4429_length_668_cov_20.197441:1-668 [pilon] NODE_9151_length_360_cov_9.372385:1-360 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 51, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 360 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9151_length_360_cov_9.372385:1-360 [pilon] Processing NODE_10950_length_285_cov_35.225610:1-285 [pilon] NODE_3394_length_799_cov_0.951327:1-799 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 20, Coverage: 3, minDepth: 5 [pilon] Confirmed 189 of 799 bases (23.65%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3394_length_799_cov_0.951327:1-799 [pilon] Processing NODE_7914_length_422_cov_22.900332:1-422 [pilon] NODE_8737_length_381_cov_5.946154:1-381 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 36, Coverage: 4, minDepth: 5 [pilon] Confirmed 163 of 381 bases (42.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8737_length_381_cov_5.946154:1-381 [pilon] Processing NODE_11481_length_264_cov_16.083916:1-264 [pilon] NODE_3713_length_753_cov_4.770570:1-753 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 77, Coverage: 13, minDepth: 5 [pilon] Confirmed 472 of 753 bases (62.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3713_length_753_cov_4.770570:1-753 [pilon] Processing NODE_9719_length_337_cov_10.291667:1-337 [pilon] NODE_9512_length_345_cov_20.486607:1-345 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 88, Coverage: 3, minDepth: 5 [pilon] Confirmed 114 of 345 bases (33.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9512_length_345_cov_20.486607:1-345 [pilon] Processing NODE_14738_length_243_cov_8.229508:1-243 [pilon] NODE_14775_length_243_cov_7.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14775_length_243_cov_7.959016:1-243 [pilon] Processing NODE_8753_length_380_cov_12.015444:1-380 [pilon] NODE_9415_length_349_cov_51.539474:1-349 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 261, Coverage: 40, minDepth: 10 [pilon] Confirmed 293 of 349 bases (83.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9415_length_349_cov_51.539474:1-349 [pilon] Processing NODE_5187_length_603_cov_1.784232:1-603 [pilon] NODE_11962_length_246_cov_35.744000:1-246 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 103, Coverage: 7, minDepth: 5 [pilon] Confirmed 192 of 246 bases (78.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11962_length_246_cov_35.744000:1-246 [pilon] Processing NODE_134_length_2806_cov_8.497579:1-2806 [pilon] NODE_7643_length_435_cov_31.901274:1-435 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 217, Coverage: 13, minDepth: 5 [pilon] Confirmed 250 of 435 bases (57.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7643_length_435_cov_31.901274:1-435 [pilon] Processing NODE_4241_length_689_cov_1.461268:1-689 [pilon] NODE_15225_length_143_cov_6.681818:1-143 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 143 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15225_length_143_cov_6.681818:1-143 [pilon] Processing NODE_9438_length_348_cov_21.991189:1-348 [pilon] NODE_14806_length_243_cov_7.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14806_length_243_cov_7.680328:1-243 [pilon] Processing NODE_14828_length_243_cov_7.434426:1-243 [pilon] NODE_13697_length_243_cov_16.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13697_length_243_cov_16.434426:1-243 [pilon] Processing NODE_11964_length_246_cov_35.112000:1-246 [pilon] NODE_6651_length_493_cov_42.975806:1-493 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 363, Coverage: 65, minDepth: 16 [pilon] Confirmed 401 of 493 bases (81.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6651_length_493_cov_42.975806:1-493 [pilon] Processing NODE_2269_length_1017_cov_21.752232:1-1017 [pilon] NODE_11842_length_252_cov_10.503817:1-252 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 31, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11842_length_252_cov_10.503817:1-252 [pilon] Processing NODE_1537_length_1246_cov_32.941333:1-1246 [pilon] NODE_2745_length_919_cov_20.397243:1-919 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 400, Coverage: 42, minDepth: 11 [pilon] Confirmed 798 of 919 bases (86.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2745_length_919_cov_20.397243:1-919 [pilon] Processing NODE_14006_length_243_cov_14.147541:1-243 [pilon] NODE_8834_length_375_cov_18.295276:1-375 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 111, Coverage: 7, minDepth: 5 [pilon] Confirmed 213 of 375 bases (56.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8834_length_375_cov_18.295276:1-375 [pilon] Processing NODE_9892_length_330_cov_21.038278:1-330 [pilon] NODE_9650_length_339_cov_24.545872:1-339 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 117, Coverage: 14, minDepth: 5 [pilon] Confirmed 275 of 339 bases (81.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9650_length_339_cov_24.545872:1-339 [pilon] Processing NODE_6353_length_513_cov_27.982143:1-513 [pilon] NODE_1611_length_1212_cov_28.555454:1-1212 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 718, Coverage: 57, minDepth: 14 [pilon] Confirmed 1090 of 1212 bases (89.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1611_length_1212_cov_28.555454:1-1212 [pilon] Processing NODE_11643_length_258_cov_16.861314:1-258 [pilon] NODE_15048_length_241_cov_12.816667:1-241 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 25, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 241 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15048_length_241_cov_12.816667:1-241 [pilon] Processing NODE_10181_length_318_cov_14.441624:1-318 [pilon] NODE_9665_length_339_cov_16.458716:1-339 log: [pilon] NODE_9131_length_360_cov_18.062762:1-360 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 103, Coverage: 11, minDepth: 5 [pilon] Confirmed 245 of 360 bases (68.06%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9131_length_360_cov_18.062762:1-360 [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 76, Coverage: 12, minDepth: 5 [pilon] Confirmed 245 of 339 bases (72.27%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9665_length_339_cov_16.458716:1-339 [pilon] Processing NODE_218_length_2437_cov_8.039292:1-2437 [pilon] Processing NODE_7557_length_440_cov_45.153605:1-440 [pilon] NODE_11153_length_277_cov_19.833333:1-277 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 66, Coverage: 6, minDepth: 5 [pilon] Confirmed 195 of 277 bases (70.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11153_length_277_cov_19.833333:1-277 [pilon] Processing NODE_5293_length_593_cov_5.836864:1-593 [pilon] NODE_14738_length_243_cov_8.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14738_length_243_cov_8.229508:1-243 [pilon] Processing NODE_7563_length_440_cov_16.902821:1-440 [pilon] NODE_12997_length_243_cov_22.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12997_length_243_cov_22.934426:1-243 [pilon] Processing NODE_5151_length_606_cov_4.441237:1-606 [pilon] NODE_9719_length_337_cov_10.291667:1-337 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 53, Coverage: 5, minDepth: 5 [pilon] Confirmed 179 of 337 bases (53.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9719_length_337_cov_10.291667:1-337 [pilon] Processing NODE_14268_length_243_cov_12.090164:1-243 [pilon] NODE_10950_length_285_cov_35.225610:1-285 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 113, Coverage: 10, minDepth: 5 [pilon] Confirmed 205 of 285 bases (71.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10950_length_285_cov_35.225610:1-285 [pilon] Processing NODE_5855_length_551_cov_5.353488:1-551 [pilon] NODE_12236_length_243_cov_35.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12236_length_243_cov_35.147541:1-243 [pilon] Processing NODE_14192_length_243_cov_12.672131:1-243 [pilon] NODE_14828_length_243_cov_7.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14828_length_243_cov_7.434426:1-243 [pilon] Processing NODE_1418_length_1292_cov_4.674637:1-1292 [pilon] NODE_5187_length_603_cov_1.784232:1-603 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 27, Coverage: 6, minDepth: 5 [pilon] Confirmed 368 of 603 bases (61.03%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5187_length_603_cov_1.784232:1-603 [pilon] Processing NODE_10315_length_312_cov_26.251309:1-312 [pilon] NODE_8753_length_380_cov_12.015444:1-380 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 71, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 380 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8753_length_380_cov_12.015444:1-380 [pilon] Processing NODE_3188_length_834_cov_3.373072:1-834 [pilon] NODE_11481_length_264_cov_16.083916:1-264 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 53, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11481_length_264_cov_16.083916:1-264 [pilon] Processing NODE_13551_length_243_cov_17.918033:1-243 [pilon] NODE_4429_length_668_cov_20.197441:1-668 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 276, Coverage: 38, minDepth: 10 [pilon] Confirmed 528 of 668 bases (79.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4429_length_668_cov_20.197441:1-668 [pilon] Processing NODE_997_length_1496_cov_13.787636:1-1496 [pilon] NODE_7914_length_422_cov_22.900332:1-422 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 144, Coverage: 8, minDepth: 5 [pilon] Confirmed 236 of 422 bases (55.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7914_length_422_cov_22.900332:1-422 [pilon] Processing NODE_4695_length_644_cov_1.183556:1-644 [pilon] NODE_9892_length_330_cov_21.038278:1-330 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 108, Coverage: 13, minDepth: 5 [pilon] Confirmed 215 of 330 bases (65.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9892_length_330_cov_21.038278:1-330 [pilon] Processing NODE_12750_length_243_cov_25.581967:1-243 [pilon] NODE_4241_length_689_cov_1.461268:1-689 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 331 of 689 bases (48.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4241_length_689_cov_1.461268:1-689 [pilon] Processing NODE_14099_length_243_cov_13.467213:1-243 [pilon] NODE_11643_length_258_cov_16.861314:1-258 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 60, Coverage: 6, minDepth: 5 [pilon] Confirmed 150 of 258 bases (58.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11643_length_258_cov_16.861314:1-258 [pilon] Processing NODE_7728_length_431_cov_19.919355:1-431 [pilon] NODE_134_length_2806_cov_8.497579:1-2806 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 587, Coverage: 23, minDepth: 6 [pilon] Confirmed 2523 of 2806 bases (89.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_134_length_2806_cov_8.497579:1-2806 [pilon] Processing NODE_13294_length_243_cov_20.278689:1-243 [pilon] NODE_11964_length_246_cov_35.112000:1-246 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 83, Coverage: 5, minDepth: 5 [pilon] Confirmed 134 of 246 bases (54.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11964_length_246_cov_35.112000:1-246 [pilon] Processing NODE_5315_length_591_cov_23.912766:1-591 [pilon] NODE_2269_length_1017_cov_21.752232:1-1017 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 454, Coverage: 49, minDepth: 12 [pilon] Confirmed 786 of 1017 bases (77.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2269_length_1017_cov_21.752232:1-1017 [pilon] Processing NODE_1704_length_1179_cov_1.943289:1-1179 [pilon] NODE_9438_length_348_cov_21.991189:1-348 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 112, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 348 bases (37.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9438_length_348_cov_21.991189:1-348 [pilon] Processing NODE_7300_length_454_cov_3.270270:1-454 [pilon] NODE_7563_length_440_cov_16.902821:1-440 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 112, Coverage: 20, minDepth: 5 [pilon] Confirmed 358 of 440 bases (81.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7563_length_440_cov_16.902821:1-440 [pilon] Processing NODE_9148_length_360_cov_11.133891:1-360 [pilon] NODE_14006_length_243_cov_14.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14006_length_243_cov_14.147541:1-243 [pilon] Processing NODE_6795_length_483_cov_18.447514:1-483 [pilon] NODE_5293_length_593_cov_5.836864:1-593 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 79, Coverage: 5, minDepth: 5 [pilon] Confirmed 266 of 593 bases (44.86%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5293_length_593_cov_5.836864:1-593 [pilon] Processing NODE_9078_length_363_cov_14.148760:1-363 [pilon] NODE_6353_length_513_cov_27.982143:1-513 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 254, Coverage: 33, minDepth: 8 [pilon] Confirmed 388 of 513 bases (75.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6353_length_513_cov_27.982143:1-513 [pilon] Processing NODE_4003_length_715_cov_14.705387:1-715 [pilon] NODE_1537_length_1246_cov_32.941333:1-1246 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 872, Coverage: 84, minDepth: 21 [pilon] Confirmed 1058 of 1246 bases (84.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1537_length_1246_cov_32.941333:1-1246 [pilon] Processing NODE_6362_length_513_cov_2.339286:1-513 [pilon] NODE_14268_length_243_cov_12.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14268_length_243_cov_12.090164:1-243 [pilon] Processing NODE_14154_length_243_cov_13.081967:1-243 [pilon] NODE_10315_length_312_cov_26.251309:1-312 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 113, Coverage: 10, minDepth: 5 [pilon] Confirmed 186 of 312 bases (59.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10315_length_312_cov_26.251309:1-312 [pilon] Processing NODE_634_length_1769_cov_7.901699:1-1769 [pilon] NODE_1418_length_1292_cov_4.674637:1-1292 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 139, Coverage: 13, minDepth: 5 [pilon] Confirmed 830 of 1292 bases (64.24%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1418_length_1292_cov_4.674637:1-1292 [pilon] Processing NODE_9825_length_333_cov_18.141509:1-333 [pilon] NODE_10181_length_318_cov_14.441624:1-318 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 58, Coverage: 7, minDepth: 5 [pilon] Confirmed 228 of 318 bases (71.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10181_length_318_cov_14.441624:1-318 [pilon] Processing NODE_10286_length_314_cov_16.875648:1-314 [pilon] NODE_7557_length_440_cov_45.153605:1-440 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 305, Coverage: 64, minDepth: 16 [pilon] Confirmed 383 of 440 bases (87.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7557_length_440_cov_45.153605:1-440 [pilon] Processing NODE_6062_length_534_cov_53.670702:1-534 [pilon] NODE_218_length_2437_cov_8.039292:1-2437 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 495, Coverage: 25, minDepth: 6 [pilon] Confirmed 2108 of 2437 bases (86.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_218_length_2437_cov_8.039292:1-2437 [pilon] Processing NODE_119_length_2889_cov_16.993136:1-2889 [pilon] NODE_12750_length_243_cov_25.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12750_length_243_cov_25.581967:1-243 [pilon] Processing NODE_14830_length_243_cov_7.409836:1-243 [pilon] NODE_5151_length_606_cov_4.441237:1-606 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 57, Coverage: 11, minDepth: 5 [pilon] Confirmed 437 of 606 bases (72.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5151_length_606_cov_4.441237:1-606 [pilon] Processing NODE_13336_length_243_cov_19.934426:1-243 [pilon] NODE_14192_length_243_cov_12.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14192_length_243_cov_12.672131:1-243 [pilon] Processing NODE_12391_length_243_cov_31.295082:1-243 [pilon] NODE_5855_length_551_cov_5.353488:1-551 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 52, Coverage: 8, minDepth: 5 [pilon] Confirmed 292 of 551 bases (52.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_7728_length_431_cov_19.919355:1-431 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 156, Coverage: 22, minDepth: 6 [pilon] Confirmed 351 of 431 bases (81.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7728_length_431_cov_19.919355:1-431 [pilon] Finished processing NODE_5855_length_551_cov_5.353488:1-551 [pilon] Processing NODE_11856_length_251_cov_22.230769:1-251 [pilon] Processing NODE_7995_length_418_cov_33.478114:1-418 [pilon] NODE_3188_length_834_cov_3.373072:1-834 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 65, Coverage: 10, minDepth: 5 [pilon] Confirmed 641 of 834 bases (76.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3188_length_834_cov_3.373072:1-834 [pilon] Processing NODE_390_length_2062_cov_1.743946:1-2062 [pilon] NODE_4695_length_644_cov_1.183556:1-644 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 25, Coverage: 4, minDepth: 5 [pilon] Confirmed 253 of 644 bases (39.29%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4695_length_644_cov_1.183556:1-644 [pilon] Processing NODE_13198_length_243_cov_21.114754:1-243 [pilon] NODE_13551_length_243_cov_17.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13551_length_243_cov_17.918033:1-243 [pilon] Processing NODE_1765_length_1157_cov_4.578185:1-1157 [pilon] NODE_997_length_1496_cov_13.787636:1-1496 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 436, Coverage: 33, minDepth: 8 [pilon] Confirmed 1083 of 1496 bases (72.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_997_length_1496_cov_13.787636:1-1496 [pilon] Processing NODE_13431_length_243_cov_19.016393:1-243 [pilon] NODE_9148_length_360_cov_11.133891:1-360 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 51, Coverage: 4, minDepth: 5 [pilon] Confirmed 177 of 360 bases (49.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9148_length_360_cov_11.133891:1-360 [pilon] Processing NODE_1967_length_1094_cov_19.441932:1-1094 [pilon] NODE_9078_length_363_cov_14.148760:1-363 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 75, Coverage: 11, minDepth: 5 [pilon] Confirmed 249 of 363 bases (68.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9078_length_363_cov_14.148760:1-363 [pilon] Processing NODE_3251_length_824_cov_1.580370:1-824 [pilon] NODE_14154_length_243_cov_13.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14154_length_243_cov_13.081967:1-243 [pilon] Processing NODE_13569_length_243_cov_17.754098:1-243 [pilon] NODE_14099_length_243_cov_13.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14099_length_243_cov_13.467213:1-243 [pilon] Processing NODE_6828_length_481_cov_24.561111:1-481 [pilon] NODE_13294_length_243_cov_20.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13294_length_243_cov_20.278689:1-243 [pilon] Processing NODE_4895_length_627_cov_1.735178:1-627 [pilon] NODE_634_length_1769_cov_7.901699:1-1769 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 328, Coverage: 19, minDepth: 5 [pilon] Confirmed 1613 of 1769 bases (91.18%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_634_length_1769_cov_7.901699:1-1769 [pilon] Processing NODE_5632_length_568_cov_9.953020:1-568 [pilon] NODE_9825_length_333_cov_18.141509:1-333 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 85, Coverage: 17, minDepth: 5 [pilon] Confirmed 263 of 333 bases (78.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9825_length_333_cov_18.141509:1-333 [pilon] Processing NODE_4284_length_683_cov_11.715302:1-683 [pilon] NODE_5315_length_591_cov_23.912766:1-591 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 292, Coverage: 38, minDepth: 10 [pilon] Confirmed 369 of 591 bases (62.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5315_length_591_cov_23.912766:1-591 [pilon] Processing NODE_10466_length_306_cov_12.637838:1-306 [pilon] NODE_1704_length_1179_cov_1.943289:1-1179 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 883 of 1179 bases (74.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1704_length_1179_cov_1.943289:1-1179 [pilon] Processing NODE_8961_length_368_cov_32.672065:1-368 [pilon] NODE_6795_length_483_cov_18.447514:1-483 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 150, Coverage: 12, minDepth: 5 [pilon] Confirmed 253 of 483 bases (52.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6795_length_483_cov_18.447514:1-483 [pilon] Processing NODE_5437_length_581_cov_29.039130:1-581 [pilon] NODE_7300_length_454_cov_3.270270:1-454 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 26, Coverage: 7, minDepth: 5 [pilon] Confirmed 275 of 454 bases (60.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7300_length_454_cov_3.270270:1-454 [pilon] Processing NODE_1800_length_1146_cov_28.382439:1-1146 [pilon] NODE_6362_length_513_cov_2.339286:1-513 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 190 of 513 bases (37.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6362_length_513_cov_2.339286:1-513 [pilon] Processing NODE_4373_length_673_cov_51.079710:1-673 [pilon] NODE_4003_length_715_cov_14.705387:1-715 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 208, Coverage: 23, minDepth: 6 [pilon] Confirmed 477 of 715 bases (66.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4003_length_715_cov_14.705387:1-715 [pilon] NODE_14830_length_243_cov_7.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14830_length_243_cov_7.409836:1-243 [pilon] Processing NODE_9683_length_339_cov_10.944954:1-339 [pilon] Processing NODE_8673_length_384_cov_12.600760:1-384 [pilon] NODE_11856_length_251_cov_22.230769:1-251 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 61, Coverage: 4, minDepth: 5 [pilon] Confirmed 118 of 251 bases (47.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11856_length_251_cov_22.230769:1-251 [pilon] Processing NODE_4050_length_710_cov_28.380306:1-710 [pilon] NODE_10286_length_314_cov_16.875648:1-314 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 76, Coverage: 2, minDepth: 5 [pilon] Confirmed 99 of 314 bases (31.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10286_length_314_cov_16.875648:1-314 [pilon] Processing NODE_7724_length_431_cov_26.032258:1-431 [pilon] NODE_6062_length_534_cov_53.670702:1-534 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 487, Coverage: 80, minDepth: 20 [pilon] Confirmed 458 of 534 bases (85.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6062_length_534_cov_53.670702:1-534 [pilon] Processing NODE_11336_length_270_cov_17.932886:1-270 [pilon] NODE_1967_length_1094_cov_19.441932:1-1094 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 489, Coverage: 33, minDepth: 8 [pilon] Confirmed 921 of 1094 bases (84.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1967_length_1094_cov_19.441932:1-1094 [pilon] Processing NODE_3850_length_734_cov_23.548124:1-734 [pilon] NODE_3251_length_824_cov_1.580370:1-824 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 46, Coverage: 5, minDepth: 5 [pilon] Confirmed 477 of 824 bases (57.89%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3251_length_824_cov_1.580370:1-824 [pilon] Processing NODE_10500_length_304_cov_31.103825:1-304 [pilon] NODE_12391_length_243_cov_31.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12391_length_243_cov_31.295082:1-243 [pilon] Processing NODE_13804_length_243_cov_15.639344:1-243 [pilon] NODE_119_length_2889_cov_16.993136:1-2889 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 1137, Coverage: 42, minDepth: 11 [pilon] Confirmed 1933 of 2889 bases (66.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_119_length_2889_cov_16.993136:1-2889 [pilon] Processing NODE_10512_length_304_cov_12.071038:1-304 [pilon] NODE_13336_length_243_cov_19.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13336_length_243_cov_19.934426:1-243 [pilon] Processing NODE_12014_length_246_cov_14.496000:1-246 [pilon] NODE_13569_length_243_cov_17.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13569_length_243_cov_17.754098:1-243 [pilon] Processing NODE_297_length_2244_cov_2.933585:1-2244 [pilon] NODE_5632_length_568_cov_9.953020:1-568 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 103, Coverage: 15, minDepth: 5 [pilon] Confirmed 449 of 568 bases (79.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5632_length_568_cov_9.953020:1-568 [pilon] NODE_4284_length_683_cov_11.715302:1-683 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 176, Coverage: 13, minDepth: 5 [pilon] Confirmed 517 of 683 bases (75.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4284_length_683_cov_11.715302:1-683 [pilon] Processing NODE_11289_length_273_cov_7.967105:1-273 [pilon] NODE_7995_length_418_cov_33.478114:1-418 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 259, Coverage: 21, minDepth: 5 [pilon] Confirmed 194 of 418 bases (46.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7995_length_418_cov_33.478114:1-418 [pilon] Processing NODE_14972_length_243_cov_5.795082:1-243 [pilon] NODE_13198_length_243_cov_21.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13198_length_243_cov_21.114754:1-243 [pilon] Processing NODE_14750_length_243_cov_8.106557:1-243 [pilon] NODE_390_length_2062_cov_1.743946:1-2062 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 93, Coverage: 6, minDepth: 5 [pilon] Confirmed 1253 of 2062 bases (60.77%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_390_length_2062_cov_1.743946:1-2062 [pilon] Processing NODE_9083_length_362_cov_54.074689:1-362 [pilon] NODE_13431_length_243_cov_19.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13431_length_243_cov_19.016393:1-243 [pilon] Processing NODE_12603_length_243_cov_27.557377:1-243 [pilon] NODE_1765_length_1157_cov_4.578185:1-1157 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 125, Coverage: 11, minDepth: 5 [pilon] Confirmed 913 of 1157 bases (78.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1765_length_1157_cov_4.578185:1-1157 [pilon] Processing NODE_12064_length_245_cov_17.790323:1-245 [pilon] NODE_8673_length_384_cov_12.600760:1-384 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 272 of 384 bases (70.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8673_length_384_cov_12.600760:1-384 [pilon] Processing NODE_7894_length_423_cov_15.771523:1-423 [pilon] NODE_4895_length_627_cov_1.735178:1-627 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 270 of 627 bases (43.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4895_length_627_cov_1.735178:1-627 [pilon] Processing NODE_886_length_1569_cov_15.989641:1-1569 [pilon] NODE_6828_length_481_cov_24.561111:1-481 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 192, Coverage: 7, minDepth: 5 [pilon] Confirmed 251 of 481 bases (52.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6828_length_481_cov_24.561111:1-481 [pilon] Processing NODE_8192_length_409_cov_0.402778:1-409 [pilon] NODE_4050_length_710_cov_28.380306:1-710 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 381, Coverage: 53, minDepth: 13 [pilon] Confirmed 569 of 710 bases (80.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4050_length_710_cov_28.380306:1-710 [pilon] Processing NODE_2035_length_1077_cov_1.646444:1-1077 [pilon] NODE_8961_length_368_cov_32.672065:1-368 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 191, Coverage: 17, minDepth: 5 [pilon] Confirmed 256 of 368 bases (69.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8961_length_368_cov_32.672065:1-368 [pilon] Processing NODE_3475_length_788_cov_23.023988:1-788 [pilon] NODE_10466_length_306_cov_12.637838:1-306 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 57, Coverage: 5, minDepth: 5 [pilon] Confirmed 224 of 306 bases (73.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10466_length_306_cov_12.637838:1-306 [pilon] Processing NODE_11958_length_247_cov_8.134921:1-247 [pilon] NODE_5437_length_581_cov_29.039130:1-581 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 313, Coverage: 44, minDepth: 11 [pilon] Confirmed 502 of 581 bases (86.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5437_length_581_cov_29.039130:1-581 [pilon] Processing NODE_12446_length_243_cov_30.057377:1-243 [pilon] NODE_9683_length_339_cov_10.944954:1-339 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 55, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 339 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9683_length_339_cov_10.944954:1-339 [pilon] Processing NODE_9619_length_341_cov_23.400000:1-341 [pilon] NODE_7724_length_431_cov_26.032258:1-431 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 214, Coverage: 22, minDepth: 6 [pilon] Confirmed 320 of 431 bases (74.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7724_length_431_cov_26.032258:1-431 [pilon] Processing NODE_8082_length_414_cov_16.761092:1-414 [pilon] NODE_1800_length_1146_cov_28.382439:1-1146 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 711, Coverage: 71, minDepth: 18 [pilon] Confirmed 1028 of 1146 bases (89.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1800_length_1146_cov_28.382439:1-1146 [pilon] Processing NODE_13089_length_243_cov_22.057377:1-243 [pilon] NODE_4373_length_673_cov_51.079710:1-673 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 610, Coverage: 91, minDepth: 23 [pilon] Confirmed 595 of 673 bases (88.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4373_length_673_cov_51.079710:1-673 [pilon] Processing NODE_10527_length_303_cov_26.137363:1-303 [pilon] NODE_3850_length_734_cov_23.548124:1-734 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 312, Coverage: 32, minDepth: 8 [pilon] Confirmed 573 of 734 bases (78.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3850_length_734_cov_23.548124:1-734 [pilon] Processing NODE_13484_length_243_cov_18.532787:1-243 [pilon] NODE_10500_length_304_cov_31.103825:1-304 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 120, Coverage: 7, minDepth: 5 [pilon] Confirmed 160 of 304 bases (52.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10500_length_304_cov_31.103825:1-304 [pilon] Processing NODE_8200_length_408_cov_21.585366:1-408 [pilon] NODE_11336_length_270_cov_17.932886:1-270 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 188 of 270 bases (69.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11336_length_270_cov_17.932886:1-270 [pilon] Processing NODE_4579_length_655_cov_7.338951:1-655 [pilon] NODE_11289_length_273_cov_7.967105:1-273 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 29, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11289_length_273_cov_7.967105:1-273 [pilon] Processing NODE_928_length_1542_cov_2.384236:1-1542 [pilon] NODE_10512_length_304_cov_12.071038:1-304 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 304 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10512_length_304_cov_12.071038:1-304 [pilon] Processing NODE_8927_length_369_cov_31.048387:1-369 [pilon] NODE_13804_length_243_cov_15.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13804_length_243_cov_15.639344:1-243 [pilon] Processing NODE_14787_length_243_cov_7.819672:1-243 [pilon] NODE_12064_length_245_cov_17.790323:1-245 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 48, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 245 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12064_length_245_cov_17.790323:1-245 [pilon] Processing NODE_10543_length_303_cov_17.703297:1-303 [pilon] NODE_14972_length_243_cov_5.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 1, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14972_length_243_cov_5.795082:1-243 [pilon] Processing NODE_6161_length_527_cov_58.645320:1-527 [pilon] NODE_9083_length_362_cov_54.074689:1-362 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 292, Coverage: 56, minDepth: 14 [pilon] Confirmed 316 of 362 bases (87.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9083_length_362_cov_54.074689:1-362 [pilon] Processing NODE_13768_length_243_cov_15.909836:1-243 [pilon] NODE_12603_length_243_cov_27.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12603_length_243_cov_27.557377:1-243 [pilon] Processing NODE_5355_length_588_cov_2.241970:1-588 [pilon] NODE_14750_length_243_cov_8.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14750_length_243_cov_8.106557:1-243 [pilon] Processing NODE_7279_length_456_cov_1.128358:1-456 [pilon] NODE_12014_length_246_cov_14.496000:1-246 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 37, Coverage: 4, minDepth: 5 [pilon] Confirmed 101 of 246 bases (41.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12014_length_246_cov_14.496000:1-246 [pilon] Processing NODE_8699_length_382_cov_20.681992:1-382 [pilon] NODE_297_length_2244_cov_2.933585:1-2244 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 166, Coverage: 10, minDepth: 5 [pilon] Confirmed 1817 of 2244 bases (80.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_297_length_2244_cov_2.933585:1-2244 [pilon] Processing NODE_8996_length_366_cov_45.118367:1-366 [pilon] NODE_7894_length_423_cov_15.771523:1-423 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 106, Coverage: 12, minDepth: 5 [pilon] Confirmed 282 of 423 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7894_length_423_cov_15.771523:1-423 [pilon] Processing NODE_4799_length_635_cov_0.931907:1-635 [pilon] NODE_8192_length_409_cov_0.402778:1-409 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 5, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 409 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8192_length_409_cov_0.402778:1-409 [pilon] Processing NODE_9975_length_327_cov_12.733010:1-327 [pilon] NODE_2035_length_1077_cov_1.646444:1-1077 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 53, Coverage: 5, minDepth: 5 [pilon] Confirmed 565 of 1077 bases (52.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2035_length_1077_cov_1.646444:1-1077 [pilon] Processing NODE_12342_length_243_cov_32.434426:1-243 [pilon] NODE_3475_length_788_cov_23.023988:1-788 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 371, Coverage: 47, minDepth: 12 [pilon] Confirmed 718 of 788 bases (91.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3475_length_788_cov_23.023988:1-788 [pilon] Processing NODE_12248_length_243_cov_34.688525:1-243 [pilon] NODE_12446_length_243_cov_30.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12446_length_243_cov_30.057377:1-243 [pilon] Processing NODE_12365_length_243_cov_31.770492:1-243 [pilon] NODE_11958_length_247_cov_8.134921:1-247 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 21, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 247 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11958_length_247_cov_8.134921:1-247 [pilon] Processing NODE_8501_length_393_cov_65.551471:1-393 [pilon] NODE_886_length_1569_cov_15.989641:1-1569 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 558, Coverage: 43, minDepth: 11 [pilon] Confirmed 1101 of 1569 bases (70.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_886_length_1569_cov_15.989641:1-1569 [pilon] Processing NODE_12769_length_243_cov_25.368852:1-243 [pilon] NODE_9619_length_341_cov_23.400000:1-341 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 121, Coverage: 13, minDepth: 5 [pilon] Confirmed 237 of 341 bases (69.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9619_length_341_cov_23.400000:1-341 [pilon] Processing NODE_7572_length_439_cov_44.383648:1-439 [pilon] NODE_8082_length_414_cov_16.761092:1-414 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 123, Coverage: 17, minDepth: 5 [pilon] Confirmed 318 of 414 bases (76.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8082_length_414_cov_16.761092:1-414 [pilon] Processing NODE_4425_length_669_cov_1.343066:1-669 [pilon] NODE_13484_length_243_cov_18.532787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13484_length_243_cov_18.532787:1-243 [pilon] Processing NODE_11780_length_254_cov_7.939850:1-254 [pilon] NODE_13089_length_243_cov_22.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13089_length_243_cov_22.057377:1-243 [pilon] Processing NODE_7627_length_436_cov_8.063492:1-436 [pilon] NODE_10527_length_303_cov_26.137363:1-303 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 98, Coverage: 9, minDepth: 5 [pilon] Confirmed 216 of 303 bases (71.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10527_length_303_cov_26.137363:1-303 [pilon] Processing NODE_5807_length_555_cov_1.509217:1-555 [pilon] NODE_8200_length_408_cov_21.585366:1-408 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 147, Coverage: 17, minDepth: 5 [pilon] Confirmed 343 of 408 bases (84.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8200_length_408_cov_21.585366:1-408 [pilon] Processing NODE_11980_length_246_cov_26.848000:1-246 [pilon] NODE_4579_length_655_cov_7.338951:1-655 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 112, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 655 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4579_length_655_cov_7.338951:1-655 [pilon] Processing NODE_3496_length_784_cov_9.633484:1-784 [pilon] NODE_928_length_1542_cov_2.384236:1-1542 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 94, Coverage: 8, minDepth: 5 [pilon] Confirmed 955 of 1542 bases (61.93%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_928_length_1542_cov_2.384236:1-1542 [pilon] Processing NODE_10186_length_318_cov_12.786802:1-318 [pilon] NODE_8927_length_369_cov_31.048387:1-369 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 182, Coverage: 21, minDepth: 5 [pilon] Confirmed 286 of 369 bases (77.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8927_length_369_cov_31.048387:1-369 [pilon] Processing NODE_6535_length_501_cov_16.021053:1-501 [pilon] NODE_13768_length_243_cov_15.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13768_length_243_cov_15.909836:1-243 [pilon] Processing NODE_6006_length_540_cov_14.792363:1-540 [pilon] NODE_7279_length_456_cov_1.128358:1-456 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 15, Coverage: 4, minDepth: 5 [pilon] Confirmed 251 of 456 bases (55.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7279_length_456_cov_1.128358:1-456 [pilon] Processing NODE_8221_length_407_cov_62.783217:1-407 [pilon] NODE_14787_length_243_cov_7.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14787_length_243_cov_7.819672:1-243 [pilon] Processing NODE_43_length_3814_cov_21.321690:1-3814 [pilon] NODE_6161_length_527_cov_58.645320:1-527 log: [pilon] frags shovill.bam: coverage 95 [pilon] Total Reads: 519, Coverage: 95, minDepth: 24 [pilon] Confirmed 443 of 527 bases (84.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6161_length_527_cov_58.645320:1-527 [pilon] Processing NODE_13056_length_243_cov_22.360656:1-243 [pilon] NODE_10543_length_303_cov_17.703297:1-303 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 75, Coverage: 3, minDepth: 5 [pilon] Confirmed 80 of 303 bases (26.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10543_length_303_cov_17.703297:1-303 [pilon] Processing NODE_25_length_4752_cov_27.004103:1-4752 [pilon] NODE_8699_length_382_cov_20.681992:1-382 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 125, Coverage: 23, minDepth: 6 [pilon] Confirmed 298 of 382 bases (78.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8699_length_382_cov_20.681992:1-382 [pilon] Processing NODE_6301_length_518_cov_1.576826:1-518 [pilon] NODE_9975_length_327_cov_12.733010:1-327 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 77, Coverage: 9, minDepth: 5 [pilon] Confirmed 255 of 327 bases (77.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9975_length_327_cov_12.733010:1-327 [pilon] Processing NODE_5122_length_608_cov_5.293634:1-608 [pilon] NODE_4799_length_635_cov_0.931907:1-635 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 65 of 635 bases (10.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4799_length_635_cov_0.931907:1-635 [pilon] Processing NODE_13439_length_243_cov_18.942623:1-243 [pilon] NODE_7572_length_439_cov_44.383648:1-439 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 307, Coverage: 57, minDepth: 14 [pilon] Confirmed 385 of 439 bases (87.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7572_length_439_cov_44.383648:1-439 [pilon] Processing NODE_6234_length_522_cov_13.433915:1-522 [pilon] NODE_12342_length_243_cov_32.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12342_length_243_cov_32.434426:1-243 [pilon] Processing NODE_3168_length_838_cov_12.348675:1-838 [pilon] NODE_12769_length_243_cov_25.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12769_length_243_cov_25.368852:1-243 [pilon] Processing NODE_14336_length_243_cov_11.573770:1-243 [pilon] NODE_5355_length_588_cov_2.241970:1-588 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 302 of 588 bases (51.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5355_length_588_cov_2.241970:1-588 [pilon] Processing NODE_15125_length_206_cov_11.388235:1-206 [pilon] NODE_12248_length_243_cov_34.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 88, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12248_length_243_cov_34.688525:1-243 [pilon] Processing NODE_1470_length_1274_cov_20.663487:1-1274 [pilon] NODE_8501_length_393_cov_65.551471:1-393 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 410, Coverage: 71, minDepth: 18 [pilon] Confirmed 339 of 393 bases (86.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8501_length_393_cov_65.551471:1-393 [pilon] Processing NODE_10952_length_285_cov_34.810976:1-285 [pilon] NODE_3496_length_784_cov_9.633484:1-784 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 150, Coverage: 24, minDepth: 6 [pilon] Confirmed 718 of 784 bases (91.58%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3496_length_784_cov_9.633484:1-784 [pilon] Processing NODE_8730_length_381_cov_11.696154:1-381 [pilon] NODE_4425_length_669_cov_1.343066:1-669 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 355 of 669 bases (53.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4425_length_669_cov_1.343066:1-669 [pilon] Processing NODE_4830_length_632_cov_6.943249:1-632 [pilon] NODE_8996_length_366_cov_45.118367:1-366 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 193, Coverage: 27, minDepth: 7 [pilon] Confirmed 248 of 366 bases (67.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8996_length_366_cov_45.118367:1-366 [pilon] Processing NODE_15190_length_163_cov_1.333333:1-163 [pilon] NODE_12365_length_243_cov_31.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12365_length_243_cov_31.770492:1-243 [pilon] Processing NODE_13184_length_243_cov_21.237705:1-243 [pilon] NODE_5807_length_555_cov_1.509217:1-555 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 321 of 555 bases (57.84%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5807_length_555_cov_1.509217:1-555 [pilon] Processing NODE_377_length_2086_cov_14.275827:1-2086 [pilon] NODE_11780_length_254_cov_7.939850:1-254 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 29, Coverage: 4, minDepth: 5 [pilon] Confirmed 108 of 254 bases (42.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11780_length_254_cov_7.939850:1-254 [pilon] Processing NODE_14124_length_243_cov_13.303279:1-243 [pilon] NODE_10186_length_318_cov_12.786802:1-318 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 164 of 318 bases (51.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10186_length_318_cov_12.786802:1-318 [pilon] Processing NODE_11182_length_276_cov_19.703226:1-276 [pilon] NODE_6535_length_501_cov_16.021053:1-501 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 134, Coverage: 23, minDepth: 6 [pilon] Confirmed 345 of 501 bases (68.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6535_length_501_cov_16.021053:1-501 [pilon] Processing NODE_14358_length_243_cov_11.393443:1-243 [pilon] NODE_6006_length_540_cov_14.792363:1-540 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 162, Coverage: 19, minDepth: 5 [pilon] Confirmed 406 of 540 bases (75.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6006_length_540_cov_14.792363:1-540 [pilon] Processing NODE_5270_length_595_cov_1.704641:1-595 [pilon] NODE_7627_length_436_cov_8.063492:1-436 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 75, Coverage: 19, minDepth: 5 [pilon] Confirmed 357 of 436 bases (81.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7627_length_436_cov_8.063492:1-436 [pilon] Processing NODE_8029_length_417_cov_13.314189:1-417 [pilon] NODE_8221_length_407_cov_62.783217:1-407 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 413, Coverage: 68, minDepth: 17 [pilon] Confirmed 364 of 407 bases (89.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8221_length_407_cov_62.783217:1-407 [pilon] Processing NODE_319_length_2200_cov_18.899471:1-2200 [pilon] NODE_11980_length_246_cov_26.848000:1-246 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 74, Coverage: 4, minDepth: 5 [pilon] Confirmed 120 of 246 bases (48.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11980_length_246_cov_26.848000:1-246 [pilon] Processing NODE_4183_length_696_cov_2.135652:1-696 [pilon] NODE_13056_length_243_cov_22.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13056_length_243_cov_22.360656:1-243 [pilon] Processing NODE_6391_length_511_cov_7.261538:1-511 [pilon] NODE_6234_length_522_cov_13.433915:1-522 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 142, Coverage: 15, minDepth: 5 [pilon] Confirmed 399 of 522 bases (76.44%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6234_length_522_cov_13.433915:1-522 [pilon] Processing NODE_11566_length_261_cov_24.592857:1-261 [pilon] NODE_5122_length_608_cov_5.293634:1-608 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 69, Coverage: 4, minDepth: 5 [pilon] Confirmed 152 of 608 bases (25.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5122_length_608_cov_5.293634:1-608 [pilon] Processing NODE_1552_length_1239_cov_30.598390:1-1239 [pilon] NODE_8730_length_381_cov_11.696154:1-381 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 68, Coverage: 6, minDepth: 5 [pilon] Confirmed 172 of 381 bases (45.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8730_length_381_cov_11.696154:1-381 [pilon] Processing NODE_12688_length_243_cov_26.393443:1-243 [pilon] NODE_6301_length_518_cov_1.576826:1-518 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 264 of 518 bases (50.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6301_length_518_cov_1.576826:1-518 [pilon] Processing NODE_5190_length_602_cov_41.900208:1-602 [pilon] NODE_43_length_3814_cov_21.321690:1-3814 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 1831, Coverage: 58, minDepth: 15 [pilon] Confirmed 3116 of 3814 bases (81.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_43_length_3814_cov_21.321690:1-3814 [pilon] Processing NODE_275_length_2290_cov_10.723375:1-2290 [pilon] NODE_5270_length_595_cov_1.704641:1-595 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 313 of 595 bases (52.61%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5270_length_595_cov_1.704641:1-595 [pilon] Processing NODE_5730_length_561_cov_0.470455:1-561 [pilon] NODE_14124_length_243_cov_13.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14124_length_243_cov_13.303279:1-243 [pilon] Processing NODE_4245_length_688_cov_15.421517:1-688 [pilon] NODE_13439_length_243_cov_18.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13439_length_243_cov_18.942623:1-243 [pilon] Processing NODE_1673_length_1191_cov_21.374766:1-1191 [pilon] NODE_14336_length_243_cov_11.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14336_length_243_cov_11.573770:1-243 [pilon] Processing NODE_5900_length_548_cov_1.491803:1-548 [pilon] NODE_15125_length_206_cov_11.388235:1-206 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 31, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 206 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15125_length_206_cov_11.388235:1-206 [pilon] Processing NODE_10270_length_315_cov_6.793814:1-315 [pilon] NODE_10952_length_285_cov_34.810976:1-285 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 134, Coverage: 10, minDepth: 5 [pilon] Confirmed 189 of 285 bases (66.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10952_length_285_cov_34.810976:1-285 [pilon] Processing NODE_2133_length_1051_cov_17.421505:1-1051 [pilon] Processing NODE_6533_length_501_cov_18.450000:1-501 [pilon] Processing NODE_14896_length_243_cov_6.754098:1-243 [pilon] Processing NODE_5261_length_596_cov_2.762105:1-596 [pilon] NODE_3168_length_838_cov_12.348675:1-838 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 212, Coverage: 18, minDepth: 5 [pilon] Confirmed 754 of 838 bases (89.98%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3168_length_838_cov_12.348675:1-838 [pilon] Processing NODE_3726_length_751_cov_12.442857:1-751 [pilon] NODE_1470_length_1274_cov_20.663487:1-1274 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 609, Coverage: 38, minDepth: 10 [pilon] Confirmed 969 of 1274 bases (76.06%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1470_length_1274_cov_20.663487:1-1274 [pilon] Processing NODE_14395_length_243_cov_11.098361:1-243 [pilon] NODE_13184_length_243_cov_21.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13184_length_243_cov_21.237705:1-243 [pilon] Processing NODE_13621_length_243_cov_17.295082:1-243 [pilon] NODE_6391_length_511_cov_7.261538:1-511 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 67, Coverage: 7, minDepth: 5 [pilon] Confirmed 304 of 511 bases (59.49%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6391_length_511_cov_7.261538:1-511 [pilon] Processing NODE_10895_length_288_cov_21.748503:1-288 [pilon] NODE_319_length_2200_cov_18.899471:1-2200 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 925, Coverage: 37, minDepth: 9 [pilon] Confirmed 2021 of 2200 bases (91.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_319_length_2200_cov_18.899471:1-2200 [pilon] Processing NODE_2280_length_1015_cov_15.312081:1-1015 [pilon] NODE_4830_length_632_cov_6.943249:1-632 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 83, Coverage: 8, minDepth: 5 [pilon] Confirmed 372 of 632 bases (58.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4830_length_632_cov_6.943249:1-632 [pilon] Processing NODE_1826_length_1136_cov_8.888670:1-1136 [pilon] NODE_15190_length_163_cov_1.333333:1-163 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 163 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15190_length_163_cov_1.333333:1-163 [pilon] Processing NODE_3549_length_777_cov_20.949695:1-777 [pilon] NODE_25_length_4752_cov_27.004103:1-4752 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 3214, Coverage: 60, minDepth: 15 [pilon] Confirmed 4254 of 4752 bases (89.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_25_length_4752_cov_27.004103:1-4752 [pilon] Processing NODE_6573_length_498_cov_36.405836:1-498 [pilon] NODE_11182_length_276_cov_19.703226:1-276 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 55, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 276 bases (53.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11182_length_276_cov_19.703226:1-276 [pilon] Processing NODE_7136_length_463_cov_25.523392:1-463 [pilon] NODE_14358_length_243_cov_11.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14358_length_243_cov_11.393443:1-243 [pilon] Processing NODE_9789_length_335_cov_9.214953:1-335 [pilon] NODE_8029_length_417_cov_13.314189:1-417 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 87, Coverage: 15, minDepth: 5 [pilon] Confirmed 275 of 417 bases (65.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8029_length_417_cov_13.314189:1-417 [pilon] Processing NODE_14007_length_243_cov_14.139344:1-243 [pilon] NODE_377_length_2086_cov_14.275827:1-2086 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 768, Coverage: 44, minDepth: 11 [pilon] Confirmed 1576 of 2086 bases (75.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_377_length_2086_cov_14.275827:1-2086 [pilon] Processing NODE_5463_length_580_cov_1.270153:1-580 [pilon] NODE_4183_length_696_cov_2.135652:1-696 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 377 of 696 bases (54.17%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4183_length_696_cov_2.135652:1-696 [pilon] Processing NODE_12618_length_243_cov_27.352459:1-243 [pilon] NODE_11566_length_261_cov_24.592857:1-261 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 71, Coverage: 7, minDepth: 5 [pilon] Confirmed 178 of 261 bases (68.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11566_length_261_cov_24.592857:1-261 [pilon] Processing NODE_1893_length_1115_cov_1.882294:1-1115 [pilon] NODE_4245_length_688_cov_15.421517:1-688 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 224, Coverage: 39, minDepth: 10 [pilon] Confirmed 584 of 688 bases (84.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4245_length_688_cov_15.421517:1-688 [pilon] Processing NODE_10180_length_318_cov_14.873096:1-318 [pilon] NODE_1552_length_1239_cov_30.598390:1-1239 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 778, Coverage: 56, minDepth: 14 [pilon] Confirmed 1042 of 1239 bases (84.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1552_length_1239_cov_30.598390:1-1239 [pilon] Processing NODE_212_length_2468_cov_32.813379:1-2468 [pilon] NODE_12688_length_243_cov_26.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12688_length_243_cov_26.393443:1-243 [pilon] Processing NODE_11474_length_264_cov_18.461538:1-264 [pilon] NODE_10895_length_288_cov_21.748503:1-288 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 80, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 288 bases (45.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10895_length_288_cov_21.748503:1-288 [pilon] Processing NODE_5706_length_563_cov_15.839367:1-563 [pilon] NODE_13621_length_243_cov_17.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13621_length_243_cov_17.295082:1-243 [pilon] Processing NODE_15201_length_158_cov_58.567568:1-158 [pilon] NODE_14896_length_243_cov_6.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14896_length_243_cov_6.754098:1-243 [pilon] Processing NODE_4807_length_634_cov_2.270955:1-634 [pilon] NODE_2280_length_1015_cov_15.312081:1-1015 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 406, Coverage: 32, minDepth: 8 [pilon] Confirmed 780 of 1015 bases (76.85%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2280_length_1015_cov_15.312081:1-1015 [pilon] Processing NODE_8755_length_380_cov_9.888031:1-380 [pilon] NODE_5730_length_561_cov_0.470455:1-561 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 75 of 561 bases (13.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5730_length_561_cov_0.470455:1-561 [pilon] Processing NODE_10574_length_302_cov_22.138122:1-302 [pilon] NODE_5900_length_548_cov_1.491803:1-548 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 309 of 548 bases (56.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5900_length_548_cov_1.491803:1-548 [pilon] Processing NODE_13900_length_243_cov_14.893443:1-243 [pilon] NODE_275_length_2290_cov_10.723375:1-2290 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 567, Coverage: 27, minDepth: 7 [pilon] Confirmed 2036 of 2290 bases (88.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_275_length_2290_cov_10.723375:1-2290 [pilon] Processing NODE_2386_length_993_cov_1.769495:1-993 [pilon] NODE_5190_length_602_cov_41.900208:1-602 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 500, Coverage: 77, minDepth: 19 [pilon] Confirmed 498 of 602 bases (82.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5190_length_602_cov_41.900208:1-602 [pilon] Processing NODE_1553_length_1239_cov_19.438283:1-1239 [pilon] NODE_14395_length_243_cov_11.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14395_length_243_cov_11.098361:1-243 [pilon] Processing NODE_10469_length_306_cov_11.610811:1-306 [pilon] NODE_10270_length_315_cov_6.793814:1-315 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 32, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10270_length_315_cov_6.793814:1-315 [pilon] Processing NODE_14123_length_243_cov_13.311475:1-243 [pilon] NODE_2133_length_1051_cov_17.421505:1-1051 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 367, Coverage: 35, minDepth: 9 [pilon] Confirmed 895 of 1051 bases (85.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2133_length_1051_cov_17.421505:1-1051 [pilon] Processing NODE_9749_length_336_cov_17.153488:1-336 [pilon] NODE_5261_length_596_cov_2.762105:1-596 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 371 of 596 bases (62.25%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5261_length_596_cov_2.762105:1-596 [pilon] Processing NODE_11088_length_280_cov_5.232704:1-280 [pilon] NODE_6533_length_501_cov_18.450000:1-501 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 174, Coverage: 22, minDepth: 6 [pilon] Confirmed 325 of 501 bases (64.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6533_length_501_cov_18.450000:1-501 [pilon] Processing NODE_6639_length_495_cov_1.778075:1-495 [pilon] NODE_1673_length_1191_cov_21.374766:1-1191 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 554, Coverage: 53, minDepth: 13 [pilon] Confirmed 939 of 1191 bases (78.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1673_length_1191_cov_21.374766:1-1191 [pilon] Processing NODE_2274_length_1016_cov_3.138547:1-1016 [pilon] NODE_3726_length_751_cov_12.442857:1-751 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 206, Coverage: 23, minDepth: 6 [pilon] Confirmed 617 of 751 bases (82.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3726_length_751_cov_12.442857:1-751 [pilon] Processing NODE_14837_length_243_cov_7.368852:1-243 [pilon] NODE_7136_length_463_cov_25.523392:1-463 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 200, Coverage: 24, minDepth: 6 [pilon] Confirmed 298 of 463 bases (64.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7136_length_463_cov_25.523392:1-463 [pilon] Processing NODE_2937_length_884_cov_23.288336:1-884 [pilon] NODE_6573_length_498_cov_36.405836:1-498 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 355, Coverage: 23, minDepth: 6 [pilon] Confirmed 310 of 498 bases (62.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6573_length_498_cov_36.405836:1-498 [pilon] Processing NODE_5332_length_590_cov_20.313433:1-590 [pilon] NODE_1826_length_1136_cov_8.888670:1-1136 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 225, Coverage: 26, minDepth: 7 [pilon] Confirmed 712 of 1136 bases (62.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1826_length_1136_cov_8.888670:1-1136 [pilon] Processing NODE_8023_length_417_cov_19.689189:1-417 [pilon] NODE_14007_length_243_cov_14.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14007_length_243_cov_14.139344:1-243 [pilon] NODE_5463_length_580_cov_1.270153:1-580 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 293 of 580 bases (50.52%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5463_length_580_cov_1.270153:1-580 [pilon] Processing NODE_7145_length_462_cov_69.428152:1-462 [pilon] Processing NODE_14981_length_243_cov_5.704918:1-243 [pilon] NODE_3549_length_777_cov_20.949695:1-777 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 334, Coverage: 40, minDepth: 10 [pilon] Confirmed 605 of 777 bases (77.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3549_length_777_cov_20.949695:1-777 [pilon] Processing NODE_12508_length_243_cov_29.000000:1-243 [pilon] NODE_9789_length_335_cov_9.214953:1-335 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 175 of 335 bases (52.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9789_length_335_cov_9.214953:1-335 [pilon] Processing NODE_7602_length_437_cov_65.639241:1-437 [pilon] NODE_10180_length_318_cov_14.873096:1-318 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 62, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 318 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10180_length_318_cov_14.873096:1-318 [pilon] Processing NODE_2301_length_1011_cov_1.886517:1-1011 [pilon] NODE_12618_length_243_cov_27.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12618_length_243_cov_27.352459:1-243 [pilon] Processing NODE_2137_length_1049_cov_31.591595:1-1049 [pilon] NODE_15201_length_158_cov_58.567568:1-158 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 158 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15201_length_158_cov_58.567568:1-158 [pilon] Processing NODE_5271_length_595_cov_1.390295:1-595 [pilon] NODE_5706_length_563_cov_15.839367:1-563 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 166, Coverage: 34, minDepth: 9 [pilon] Confirmed 475 of 563 bases (84.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5706_length_563_cov_15.839367:1-563 [pilon] Processing NODE_2552_length_956_cov_23.087425:1-956 [pilon] NODE_212_length_2468_cov_32.813379:1-2468 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 1666, Coverage: 50, minDepth: 13 [pilon] Confirmed 1942 of 2468 bases (78.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_212_length_2468_cov_32.813379:1-2468 [pilon] Processing NODE_8940_length_369_cov_18.362903:1-369 [pilon] NODE_1893_length_1115_cov_1.882294:1-1115 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 830 of 1115 bases (74.44%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1893_length_1115_cov_1.882294:1-1115 [pilon] Processing NODE_426_length_1999_cov_30.881789:1-1999 [pilon] NODE_4807_length_634_cov_2.270955:1-634 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 475 of 634 bases (74.92%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4807_length_634_cov_2.270955:1-634 [pilon] Processing NODE_3521_length_781_cov_0.654545:1-781 [pilon] NODE_11474_length_264_cov_18.461538:1-264 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 57, Coverage: 5, minDepth: 5 [pilon] Confirmed 142 of 264 bases (53.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11474_length_264_cov_18.461538:1-264 [pilon] Processing NODE_5697_length_563_cov_51.341629:1-563 [pilon] NODE_2386_length_993_cov_1.769495:1-993 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 42, Coverage: 5, minDepth: 5 [pilon] Confirmed 495 of 993 bases (49.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2386_length_993_cov_1.769495:1-993 [pilon] Processing NODE_5754_length_559_cov_18.785388:1-559 [pilon] NODE_8755_length_380_cov_9.888031:1-380 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 68, Coverage: 3, minDepth: 5 [pilon] Confirmed 169 of 380 bases (44.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8755_length_380_cov_9.888031:1-380 [pilon] Processing NODE_13476_length_243_cov_18.631148:1-243 [pilon] NODE_11088_length_280_cov_5.232704:1-280 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 280 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11088_length_280_cov_5.232704:1-280 [pilon] Processing NODE_3696_length_755_cov_6.326498:1-755 [pilon] NODE_14123_length_243_cov_13.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14123_length_243_cov_13.311475:1-243 [pilon] Processing NODE_5397_length_584_cov_23.928726:1-584 [pilon] NODE_10574_length_302_cov_22.138122:1-302 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 116, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 302 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10574_length_302_cov_22.138122:1-302 [pilon] Processing NODE_9824_length_333_cov_18.400943:1-333 [pilon] NODE_14837_length_243_cov_7.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14837_length_243_cov_7.368852:1-243 [pilon] Processing NODE_8931_length_369_cov_25.395161:1-369 [pilon] NODE_9749_length_336_cov_17.153488:1-336 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 83, Coverage: 8, minDepth: 5 [pilon] Confirmed 173 of 336 bases (51.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9749_length_336_cov_17.153488:1-336 [pilon] Processing NODE_8993_length_367_cov_10.032520:1-367 [pilon] NODE_13900_length_243_cov_14.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_10469_length_306_cov_11.610811:1-306 log: [pilon] Finished processing NODE_13900_length_243_cov_14.893443:1-243 [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 29, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10469_length_306_cov_11.610811:1-306 [pilon] Processing NODE_5952_length_544_cov_19.243499:1-544 [pilon] Processing NODE_4377_length_673_cov_19.885870:1-673 [pilon] NODE_6639_length_495_cov_1.778075:1-495 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 209 of 495 bases (42.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6639_length_495_cov_1.778075:1-495 [pilon] Processing NODE_7807_length_427_cov_1.049020:1-427 [pilon] NODE_2274_length_1016_cov_3.138547:1-1016 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 74, Coverage: 9, minDepth: 5 [pilon] Confirmed 852 of 1016 bases (83.86%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2274_length_1016_cov_3.138547:1-1016 [pilon] Processing NODE_5668_length_565_cov_33.477477:1-565 [pilon] NODE_1553_length_1239_cov_19.438283:1-1239 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 493, Coverage: 37, minDepth: 9 [pilon] Confirmed 1118 of 1239 bases (90.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1553_length_1239_cov_19.438283:1-1239 [pilon] Processing NODE_1851_length_1129_cov_1.731151:1-1129 [pilon] NODE_5271_length_595_cov_1.390295:1-595 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 243 of 595 bases (40.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5271_length_595_cov_1.390295:1-595 [pilon] Processing NODE_3643_length_762_cov_41.664587:1-762 [pilon] NODE_2301_length_1011_cov_1.886517:1-1011 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 59, Coverage: 8, minDepth: 5 [pilon] Confirmed 719 of 1011 bases (71.12%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2301_length_1011_cov_1.886517:1-1011 [pilon] Processing NODE_3991_length_716_cov_3.403361:1-716 [pilon] NODE_12508_length_243_cov_29.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 79, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12508_length_243_cov_29.000000:1-243 [pilon] Processing NODE_9992_length_326_cov_16.434146:1-326 [pilon] NODE_14981_length_243_cov_5.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14981_length_243_cov_5.704918:1-243 [pilon] Processing NODE_4994_length_619_cov_1.757028:1-619 [pilon] NODE_2937_length_884_cov_23.288336:1-884 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 421, Coverage: 51, minDepth: 13 [pilon] Confirmed 765 of 884 bases (86.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2937_length_884_cov_23.288336:1-884 [pilon] Processing NODE_1227_length_1376_cov_5.491633:1-1376 [pilon] NODE_8023_length_417_cov_19.689189:1-417 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 150, Coverage: 15, minDepth: 5 [pilon] Confirmed 239 of 417 bases (57.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8023_length_417_cov_19.689189:1-417 [pilon] Processing NODE_14201_length_243_cov_12.590164:1-243 [pilon] NODE_7145_length_462_cov_69.428152:1-462 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 514, Coverage: 90, minDepth: 23 [pilon] Confirmed 392 of 462 bases (84.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7145_length_462_cov_69.428152:1-462 [pilon] Processing NODE_8744_length_380_cov_33.293436:1-380 [pilon] NODE_5332_length_590_cov_20.313433:1-590 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 219, Coverage: 27, minDepth: 7 [pilon] Confirmed 526 of 590 bases (89.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5332_length_590_cov_20.313433:1-590 [pilon] Processing NODE_5496_length_578_cov_1.529540:1-578 [pilon] NODE_7602_length_437_cov_65.639241:1-437 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 480, Coverage: 90, minDepth: 23 [pilon] Confirmed 388 of 437 bases (88.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7602_length_437_cov_65.639241:1-437 [pilon] Processing NODE_5310_length_592_cov_1.284501:1-592 [pilon] NODE_2137_length_1049_cov_31.591595:1-1049 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 685, Coverage: 55, minDepth: 14 [pilon] Confirmed 954 of 1049 bases (90.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2137_length_1049_cov_31.591595:1-1049 [pilon] Processing NODE_2408_length_989_cov_16.831797:1-989 [pilon] NODE_5697_length_563_cov_51.341629:1-563 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 504, Coverage: 78, minDepth: 20 [pilon] Confirmed 498 of 563 bases (88.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5697_length_563_cov_51.341629:1-563 [pilon] Processing NODE_4554_length_657_cov_4.796642:1-657 [pilon] NODE_2552_length_956_cov_23.087425:1-956 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 451, Coverage: 45, minDepth: 11 [pilon] Confirmed 618 of 956 bases (64.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2552_length_956_cov_23.087425:1-956 [pilon] Processing NODE_1524_length_1250_cov_14.140833:1-1250 [pilon] NODE_8940_length_369_cov_18.362903:1-369 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 102, Coverage: 16, minDepth: 5 [pilon] Confirmed 259 of 369 bases (70.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8940_length_369_cov_18.362903:1-369 [pilon] Processing NODE_12231_length_243_cov_35.377049:1-243 [pilon] NODE_3696_length_755_cov_6.326498:1-755 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 181, Coverage: 31, minDepth: 8 [pilon] Confirmed 567 of 755 bases (75.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3696_length_755_cov_6.326498:1-755 [pilon] Processing NODE_10949_length_285_cov_35.603659:1-285 [pilon] NODE_5754_length_559_cov_18.785388:1-559 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 187, Coverage: 15, minDepth: 5 [pilon] Confirmed 402 of 559 bases (71.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5754_length_559_cov_18.785388:1-559 [pilon] Processing NODE_10953_length_285_cov_30.676829:1-285 [pilon] NODE_3521_length_781_cov_0.654545:1-781 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 13, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 781 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3521_length_781_cov_0.654545:1-781 [pilon] Processing NODE_10524_length_303_cov_29.148352:1-303 [pilon] NODE_426_length_1999_cov_30.881789:1-1999 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 1380, Coverage: 64, minDepth: 16 [pilon] Confirmed 1675 of 1999 bases (83.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_426_length_1999_cov_30.881789:1-1999 [pilon] Processing NODE_15008_length_243_cov_5.319672:1-243 [pilon] NODE_13476_length_243_cov_18.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13476_length_243_cov_18.631148:1-243 [pilon] Processing NODE_7956_length_420_cov_13.478261:1-420 [pilon] NODE_7807_length_427_cov_1.049020:1-427 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 427 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7807_length_427_cov_1.049020:1-427 [pilon] Processing NODE_2371_length_998_cov_2.590650:1-998 [pilon] NODE_3643_length_762_cov_41.664587:1-762 log: [pilon] frags shovill.bam: coverage 83 [pilon] Total Reads: 620, Coverage: 83, minDepth: 21 [pilon] Confirmed 646 of 762 bases (84.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3643_length_762_cov_41.664587:1-762 [pilon] Processing NODE_10853_length_290_cov_21.911243:1-290 [pilon] NODE_9824_length_333_cov_18.400943:1-333 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 73, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 333 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9824_length_333_cov_18.400943:1-333 [pilon] Processing NODE_14882_length_243_cov_6.901639:1-243 [pilon] NODE_8931_length_369_cov_25.395161:1-369 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 134, Coverage: 16, minDepth: 5 [pilon] Confirmed 246 of 369 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8931_length_369_cov_25.395161:1-369 [pilon] Processing NODE_39_length_4037_cov_7.535495:1-4037 [pilon] NODE_5397_length_584_cov_23.928726:1-584 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 268, Coverage: 28, minDepth: 7 [pilon] Confirmed 358 of 584 bases (61.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5397_length_584_cov_23.928726:1-584 [pilon] Processing NODE_3007_length_872_cov_4.749667:1-872 [pilon] NODE_8993_length_367_cov_10.032520:1-367 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 53, Coverage: 4, minDepth: 5 [pilon] Confirmed 175 of 367 bases (47.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8993_length_367_cov_10.032520:1-367 [pilon] Processing NODE_2674_length_933_cov_7.225369:1-933 [pilon] NODE_4554_length_657_cov_4.796642:1-657 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 61, Coverage: 11, minDepth: 5 [pilon] Confirmed 462 of 657 bases (70.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4554_length_657_cov_4.796642:1-657 [pilon] Processing NODE_6461_length_506_cov_31.610390:1-506 [pilon] NODE_2408_length_989_cov_16.831797:1-989 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 355, Coverage: 37, minDepth: 9 [pilon] Confirmed 855 of 989 bases (86.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2408_length_989_cov_16.831797:1-989 [pilon] Processing NODE_3837_length_736_cov_0.934959:1-736 [pilon] NODE_5952_length_544_cov_19.243499:1-544 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 262, Coverage: 43, minDepth: 11 [pilon] Confirmed 444 of 544 bases (81.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5952_length_544_cov_19.243499:1-544 [pilon] NODE_4377_length_673_cov_19.885870:1-673 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 270, Coverage: 28, minDepth: 7 [pilon] Confirmed 419 of 673 bases (62.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_5859_length_551_cov_1.862791:1-551 [pilon] Finished processing NODE_4377_length_673_cov_19.885870:1-673 [pilon] Processing NODE_7720_length_432_cov_0.836013:1-432 [pilon] NODE_5668_length_565_cov_33.477477:1-565 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 332, Coverage: 55, minDepth: 14 [pilon] Confirmed 434 of 565 bases (76.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5668_length_565_cov_33.477477:1-565 [pilon] Processing NODE_14672_length_243_cov_8.795082:1-243 [pilon] NODE_9992_length_326_cov_16.434146:1-326 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 73, Coverage: 6, minDepth: 5 [pilon] Confirmed 169 of 326 bases (51.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9992_length_326_cov_16.434146:1-326 [pilon] Processing NODE_4165_length_697_cov_16.984375:1-697 [pilon] NODE_3991_length_716_cov_3.403361:1-716 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 53, Coverage: 9, minDepth: 5 [pilon] Confirmed 514 of 716 bases (71.79%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3991_length_716_cov_3.403361:1-716 [pilon] Processing NODE_9171_length_358_cov_44.835443:1-358 [pilon] NODE_1851_length_1129_cov_1.731151:1-1129 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 820 of 1129 bases (72.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1851_length_1129_cov_1.731151:1-1129 [pilon] Processing NODE_741_length_1672_cov_2.511928:1-1672 [pilon] NODE_4994_length_619_cov_1.757028:1-619 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 195 of 619 bases (31.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4994_length_619_cov_1.757028:1-619 [pilon] Processing NODE_2975_length_879_cov_1.511873:1-879 [pilon] NODE_14201_length_243_cov_12.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14201_length_243_cov_12.590164:1-243 [pilon] Processing NODE_9964_length_327_cov_19.063107:1-327 [pilon] NODE_8744_length_380_cov_33.293436:1-380 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 197, Coverage: 25, minDepth: 6 [pilon] Confirmed 274 of 380 bases (72.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8744_length_380_cov_33.293436:1-380 [pilon] Processing NODE_11633_length_258_cov_21.934307:1-258 [pilon] NODE_5496_length_578_cov_1.529540:1-578 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 311 of 578 bases (53.81%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5496_length_578_cov_1.529540:1-578 [pilon] Processing NODE_12730_length_243_cov_25.811475:1-243 [pilon] NODE_1227_length_1376_cov_5.491633:1-1376 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 175, Coverage: 16, minDepth: 5 [pilon] Confirmed 1029 of 1376 bases (74.78%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1227_length_1376_cov_5.491633:1-1376 [pilon] Processing NODE_1295_length_1343_cov_3.021277:1-1343 [pilon] NODE_10949_length_285_cov_35.603659:1-285 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 116, Coverage: 11, minDepth: 5 [pilon] Confirmed 200 of 285 bases (70.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10949_length_285_cov_35.603659:1-285 [pilon] Processing NODE_6178_length_526_cov_2.145679:1-526 [pilon] NODE_5310_length_592_cov_1.284501:1-592 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 133 of 592 bases (22.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5310_length_592_cov_1.284501:1-592 [pilon] Processing NODE_232_length_2407_cov_10.857830:1-2407 [pilon] NODE_1524_length_1250_cov_14.140833:1-1250 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 378, Coverage: 29, minDepth: 7 [pilon] Confirmed 1138 of 1250 bases (91.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1524_length_1250_cov_14.140833:1-1250 [pilon] Processing NODE_5094_length_611_cov_1.261224:1-611 [pilon] NODE_2371_length_998_cov_2.590650:1-998 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 67, Coverage: 9, minDepth: 5 [pilon] Confirmed 786 of 998 bases (78.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2371_length_998_cov_2.590650:1-998 [pilon] Processing NODE_12785_length_243_cov_25.213115:1-243 [pilon] NODE_10853_length_290_cov_21.911243:1-290 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 85, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 290 bases (44.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10853_length_290_cov_21.911243:1-290 [pilon] Processing NODE_6675_length_492_cov_17.396226:1-492 [pilon] NODE_12231_length_243_cov_35.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12231_length_243_cov_35.377049:1-243 [pilon] Processing NODE_3212_length_831_cov_18.774648:1-831 [pilon] NODE_10953_length_285_cov_30.676829:1-285 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 115, Coverage: 6, minDepth: 5 [pilon] Confirmed 184 of 285 bases (64.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10953_length_285_cov_30.676829:1-285 [pilon] NODE_10524_length_303_cov_29.148352:1-303 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 93, Coverage: 9, minDepth: 5 [pilon] Confirmed 173 of 303 bases (57.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_4573_length_656_cov_1.018692:1-656 [pilon] Finished processing NODE_10524_length_303_cov_29.148352:1-303 [pilon] Processing NODE_2677_length_932_cov_40.869297:1-932 [pilon] NODE_7956_length_420_cov_13.478261:1-420 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 102, Coverage: 17, minDepth: 5 [pilon] Confirmed 271 of 420 bases (64.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7956_length_420_cov_13.478261:1-420 [pilon] Processing NODE_4116_length_703_cov_20.888316:1-703 [pilon] NODE_14882_length_243_cov_6.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14882_length_243_cov_6.901639:1-243 [pilon] Processing NODE_5393_length_585_cov_0.883621:1-585 [pilon] NODE_15008_length_243_cov_5.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15008_length_243_cov_5.319672:1-243 [pilon] Processing NODE_4924_length_624_cov_14.230616:1-624 [pilon] NODE_6461_length_506_cov_31.610390:1-506 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 287, Coverage: 44, minDepth: 11 [pilon] Confirmed 438 of 506 bases (86.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6461_length_506_cov_31.610390:1-506 [pilon] Processing NODE_11548_length_262_cov_14.347518:1-262 [pilon] NODE_3837_length_736_cov_0.934959:1-736 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 736 bases (17.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3837_length_736_cov_0.934959:1-736 [pilon] Processing NODE_5742_length_560_cov_10.851936:1-560 [pilon] NODE_3007_length_872_cov_4.749667:1-872 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 81, Coverage: 12, minDepth: 5 [pilon] Confirmed 704 of 872 bases (80.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3007_length_872_cov_4.749667:1-872 [pilon] Processing NODE_13036_length_243_cov_22.557377:1-243 [pilon] NODE_6178_length_526_cov_2.145679:1-526 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 28, Coverage: 7, minDepth: 5 [pilon] Confirmed 329 of 526 bases (62.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6178_length_526_cov_2.145679:1-526 [pilon] Processing NODE_7561_length_440_cov_26.119122:1-440 [pilon] NODE_39_length_4037_cov_7.535495:1-4037 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 750, Coverage: 23, minDepth: 6 [pilon] Confirmed 2940 of 4037 bases (72.83%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_39_length_4037_cov_7.535495:1-4037 [pilon] Processing NODE_13346_length_243_cov_19.860656:1-243 [pilon] NODE_2674_length_933_cov_7.225369:1-933 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 201, Coverage: 24, minDepth: 6 [pilon] Confirmed 725 of 933 bases (77.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2674_length_933_cov_7.225369:1-933 [pilon] Processing NODE_5979_length_542_cov_50.707838:1-542 [pilon] NODE_4165_length_697_cov_16.984375:1-697 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 212, Coverage: 26, minDepth: 7 [pilon] Confirmed 556 of 697 bases (79.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4165_length_697_cov_16.984375:1-697 [pilon] Processing NODE_6251_length_521_cov_1.945000:1-521 [pilon] NODE_5859_length_551_cov_1.862791:1-551 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 242 of 551 bases (43.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5859_length_551_cov_1.862791:1-551 [pilon] Processing NODE_11995_length_246_cov_20.088000:1-246 [pilon] NODE_12785_length_243_cov_25.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12785_length_243_cov_25.213115:1-243 [pilon] Processing NODE_1396_length_1298_cov_3.276126:1-1298 [pilon] NODE_14672_length_243_cov_8.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14672_length_243_cov_8.795082:1-243 [pilon] Processing NODE_8172_length_410_cov_1.010381:1-410 [pilon] NODE_7720_length_432_cov_0.836013:1-432 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 9 of 432 bases (2.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7720_length_432_cov_0.836013:1-432 [pilon] Processing NODE_13457_length_243_cov_18.786885:1-243 [pilon] NODE_9171_length_358_cov_44.835443:1-358 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 274, Coverage: 40, minDepth: 10 [pilon] Confirmed 323 of 358 bases (90.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9171_length_358_cov_44.835443:1-358 [pilon] Processing NODE_9482_length_346_cov_41.600000:1-346 [pilon] NODE_2975_length_879_cov_1.511873:1-879 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 32, Coverage: 5, minDepth: 5 [pilon] Confirmed 483 of 879 bases (54.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2975_length_879_cov_1.511873:1-879 [pilon] Processing NODE_4795_length_635_cov_2.142023:1-635 [pilon] NODE_6675_length_492_cov_17.396226:1-492 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 139, Coverage: 26, minDepth: 7 [pilon] Confirmed 406 of 492 bases (82.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6675_length_492_cov_17.396226:1-492 [pilon] Processing NODE_3870_length_732_cov_3.757774:1-732 [pilon] NODE_11633_length_258_cov_21.934307:1-258 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 73, Coverage: 10, minDepth: 5 [pilon] Confirmed 200 of 258 bases (77.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11633_length_258_cov_21.934307:1-258 [pilon] Processing NODE_13588_length_243_cov_17.590164:1-243 [pilon] NODE_9964_length_327_cov_19.063107:1-327 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 101, Coverage: 3, minDepth: 5 [pilon] Confirmed 125 of 327 bases (38.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9964_length_327_cov_19.063107:1-327 [pilon] Processing NODE_11981_length_246_cov_26.808000:1-246 [pilon] NODE_741_length_1672_cov_2.511928:1-1672 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 103, Coverage: 8, minDepth: 5 [pilon] Confirmed 1106 of 1672 bases (66.15%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_741_length_1672_cov_2.511928:1-1672 [pilon] Processing NODE_9771_length_336_cov_9.651163:1-336 [pilon] NODE_12730_length_243_cov_25.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12730_length_243_cov_25.811475:1-243 [pilon] Processing NODE_12510_length_243_cov_28.942623:1-243 [pilon] NODE_1295_length_1343_cov_3.021277:1-1343 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 100, Coverage: 9, minDepth: 5 [pilon] Confirmed 1158 of 1343 bases (86.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1295_length_1343_cov_3.021277:1-1343 [pilon] Processing NODE_9575_length_342_cov_26.746606:1-342 [pilon] NODE_5094_length_611_cov_1.261224:1-611 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 292 of 611 bases (47.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5094_length_611_cov_1.261224:1-611 [pilon] Processing NODE_9398_length_350_cov_36.724891:1-350 [pilon] NODE_11548_length_262_cov_14.347518:1-262 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 262 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11548_length_262_cov_14.347518:1-262 [pilon] Processing NODE_5949_length_544_cov_36.387707:1-544 [pilon] NODE_232_length_2407_cov_10.857830:1-2407 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 571, Coverage: 31, minDepth: 8 [pilon] Confirmed 2053 of 2407 bases (85.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_232_length_2407_cov_10.857830:1-2407 [pilon] Processing NODE_6959_length_474_cov_5.220963:1-474 [pilon] NODE_4573_length_656_cov_1.018692:1-656 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 24, Coverage: 4, minDepth: 5 [pilon] Confirmed 322 of 656 bases (49.09%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4573_length_656_cov_1.018692:1-656 [pilon] Processing NODE_7876_length_424_cov_0.597360:1-424 [pilon] NODE_5742_length_560_cov_10.851936:1-560 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 101, Coverage: 18, minDepth: 5 [pilon] Confirmed 409 of 560 bases (73.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5742_length_560_cov_10.851936:1-560 [pilon] Processing NODE_15111_length_216_cov_55.463158:1-216 [pilon] NODE_3212_length_831_cov_18.774648:1-831 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 316, Coverage: 31, minDepth: 8 [pilon] Confirmed 712 of 831 bases (85.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3212_length_831_cov_18.774648:1-831 [pilon] Processing NODE_6835_length_481_cov_14.555556:1-481 [pilon] NODE_5393_length_585_cov_0.883621:1-585 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 140 of 585 bases (23.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5393_length_585_cov_0.883621:1-585 [pilon] Processing NODE_7407_length_447_cov_487.616564:1-447 [pilon] NODE_2677_length_932_cov_40.869297:1-932 log: [pilon] frags shovill.bam: coverage 94 [pilon] Total Reads: 753, Coverage: 94, minDepth: 24 [pilon] Confirmed 807 of 932 bases (86.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2677_length_932_cov_40.869297:1-932 [pilon] Processing NODE_2886_length_895_cov_16.609819:1-895 [pilon] NODE_4116_length_703_cov_20.888316:1-703 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 271, Coverage: 23, minDepth: 6 [pilon] Confirmed 439 of 703 bases (62.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4116_length_703_cov_20.888316:1-703 [pilon] Processing NODE_13320_length_243_cov_20.081967:1-243 [pilon] NODE_4924_length_624_cov_14.230616:1-624 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 161, Coverage: 20, minDepth: 5 [pilon] Confirmed 483 of 624 bases (77.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4924_length_624_cov_14.230616:1-624 [pilon] Processing NODE_4736_length_640_cov_48.834297:1-640 [pilon] NODE_7561_length_440_cov_26.119122:1-440 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 165, Coverage: 9, minDepth: 5 [pilon] Confirmed 245 of 440 bases (55.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7561_length_440_cov_26.119122:1-440 [pilon] Processing NODE_10016_length_324_cov_26.694581:1-324 [pilon] NODE_1396_length_1298_cov_3.276126:1-1298 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 137, Coverage: 12, minDepth: 5 [pilon] Confirmed 850 of 1298 bases (65.49%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1396_length_1298_cov_3.276126:1-1298 [pilon] Processing NODE_2326_length_1005_cov_4.313348:1-1005 [pilon] NODE_3870_length_732_cov_3.757774:1-732 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 61, Coverage: 10, minDepth: 5 [pilon] Confirmed 641 of 732 bases (87.57%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3870_length_732_cov_3.757774:1-732 [pilon] Processing NODE_6444_length_507_cov_19.727979:1-507 [pilon] NODE_13036_length_243_cov_22.557377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13036_length_243_cov_22.557377:1-243 [pilon] Processing NODE_5986_length_542_cov_13.586698:1-542 [pilon] NODE_6251_length_521_cov_1.945000:1-521 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 33, Coverage: 7, minDepth: 5 [pilon] Confirmed 424 of 521 bases (81.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6251_length_521_cov_1.945000:1-521 [pilon] Processing NODE_1291_length_1344_cov_13.142273:1-1344 [pilon] NODE_13346_length_243_cov_19.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13346_length_243_cov_19.860656:1-243 [pilon] Processing NODE_14836_length_243_cov_7.368852:1-243 [pilon] NODE_5979_length_542_cov_50.707838:1-542 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 470, Coverage: 78, minDepth: 20 [pilon] Confirmed 450 of 542 bases (83.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5979_length_542_cov_50.707838:1-542 [pilon] Processing NODE_1445_length_1283_cov_2.430293:1-1283 [pilon] NODE_11995_length_246_cov_20.088000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 50, Coverage: 3, minDepth: 5 [pilon] Confirmed 40 of 246 bases (16.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11995_length_246_cov_20.088000:1-246 [pilon] Processing NODE_12007_length_246_cov_16.680000:1-246 [pilon] NODE_4795_length_635_cov_2.142023:1-635 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 333 of 635 bases (52.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4795_length_635_cov_2.142023:1-635 [pilon] Processing NODE_13524_length_243_cov_18.139344:1-243 [pilon] NODE_9482_length_346_cov_41.600000:1-346 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 225, Coverage: 34, minDepth: 9 [pilon] Confirmed 312 of 346 bases (90.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9482_length_346_cov_41.600000:1-346 [pilon] Processing NODE_5589_length_571_cov_10.208889:1-571 [pilon] NODE_13457_length_243_cov_18.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13457_length_243_cov_18.786885:1-243 [pilon] Processing NODE_14894_length_243_cov_6.778689:1-243 [pilon] NODE_8172_length_410_cov_1.010381:1-410 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 85 of 410 bases (20.73%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8172_length_410_cov_1.010381:1-410 [pilon] Processing NODE_2257_length_1020_cov_1.711902:1-1020 [pilon] NODE_13588_length_243_cov_17.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13588_length_243_cov_17.590164:1-243 [pilon] Processing NODE_1904_length_1112_cov_2.624622:1-1112 [pilon] NODE_5949_length_544_cov_36.387707:1-544 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 370, Coverage: 59, minDepth: 15 [pilon] Confirmed 447 of 544 bases (82.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5949_length_544_cov_36.387707:1-544 [pilon] Processing NODE_7836_length_425_cov_50.907895:1-425 [pilon] NODE_11981_length_246_cov_26.808000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 70, Coverage: 3, minDepth: 5 [pilon] Confirmed 27 of 246 bases (10.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11981_length_246_cov_26.808000:1-246 [pilon] Processing NODE_9048_length_363_cov_38.669421:1-363 [pilon] NODE_12510_length_243_cov_28.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12510_length_243_cov_28.942623:1-243 [pilon] Processing NODE_3542_length_778_cov_13.502283:1-778 [pilon] NODE_9575_length_342_cov_26.746606:1-342 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 127, Coverage: 5, minDepth: 5 [pilon] Confirmed 140 of 342 bases (40.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9575_length_342_cov_26.746606:1-342 [pilon] NODE_9771_length_336_cov_9.651163:1-336 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 32, Coverage: 2, minDepth: 5 [pilon] Confirmed 19 of 336 bases (5.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9771_length_336_cov_9.651163:1-336 [pilon] Processing NODE_8351_length_402_cov_26.167260:1-402 [pilon] Processing NODE_12217_length_243_cov_36.000000:1-243 [pilon] NODE_15111_length_216_cov_55.463158:1-216 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 130, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 216 bases (60.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15111_length_216_cov_55.463158:1-216 [pilon] Processing NODE_4237_length_689_cov_5.218310:1-689 [pilon] NODE_9398_length_350_cov_36.724891:1-350 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 210, Coverage: 33, minDepth: 8 [pilon] Confirmed 323 of 350 bases (92.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9398_length_350_cov_36.724891:1-350 [pilon] Processing NODE_10373_length_309_cov_34.537234:1-309 [pilon] NODE_10016_length_324_cov_26.694581:1-324 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 129, Coverage: 15, minDepth: 5 [pilon] Confirmed 263 of 324 bases (81.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10016_length_324_cov_26.694581:1-324 [pilon] Processing NODE_9136_length_360_cov_15.920502:1-360 [pilon] NODE_2326_length_1005_cov_4.313348:1-1005 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 97, Coverage: 12, minDepth: 5 [pilon] Confirmed 828 of 1005 bases (82.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2326_length_1005_cov_4.313348:1-1005 [pilon] Processing NODE_1130_length_1425_cov_17.958589:1-1425 [pilon] NODE_6959_length_474_cov_5.220963:1-474 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 53, Coverage: 5, minDepth: 5 [pilon] Confirmed 269 of 474 bases (56.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6959_length_474_cov_5.220963:1-474 [pilon] Processing NODE_11047_length_282_cov_8.906832:1-282 [pilon] NODE_6444_length_507_cov_19.727979:1-507 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 173, Coverage: 24, minDepth: 6 [pilon] Confirmed 451 of 507 bases (88.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6444_length_507_cov_19.727979:1-507 [pilon] Processing NODE_6732_length_488_cov_9.841962:1-488 [pilon] NODE_7876_length_424_cov_0.597360:1-424 log: [pilon] NODE_6835_length_481_cov_14.555556:1-481 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 146, Coverage: 13, minDepth: 5 [pilon] Confirmed 281 of 481 bases (58.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6835_length_481_cov_14.555556:1-481 [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 47 of 424 bases (11.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_289_length_2267_cov_2.401678:1-2267 [pilon] Finished processing NODE_7876_length_424_cov_0.597360:1-424 [pilon] Processing NODE_1014_length_1488_cov_21.150695:1-1488 [pilon] NODE_13320_length_243_cov_20.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13320_length_243_cov_20.081967:1-243 [pilon] Processing NODE_14761_length_243_cov_8.024590:1-243 [pilon] NODE_2886_length_895_cov_16.609819:1-895 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 328, Coverage: 31, minDepth: 8 [pilon] Confirmed 774 of 895 bases (86.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2886_length_895_cov_16.609819:1-895 [pilon] Processing NODE_8122_length_412_cov_1.756014:1-412 [pilon] NODE_4736_length_640_cov_48.834297:1-640 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 572, Coverage: 79, minDepth: 20 [pilon] Confirmed 557 of 640 bases (87.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4736_length_640_cov_48.834297:1-640 [pilon] Processing NODE_8242_length_407_cov_1.059441:1-407 [pilon] NODE_7836_length_425_cov_50.907895:1-425 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 362, Coverage: 64, minDepth: 16 [pilon] Confirmed 373 of 425 bases (87.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7836_length_425_cov_50.907895:1-425 [pilon] Processing NODE_1033_length_1478_cov_2.239499:1-1478 [pilon] NODE_5986_length_542_cov_13.586698:1-542 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 114, Coverage: 15, minDepth: 5 [pilon] Confirmed 356 of 542 bases (65.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5986_length_542_cov_13.586698:1-542 [pilon] Processing NODE_12151_length_243_cov_39.172131:1-243 [pilon] NODE_7407_length_447_cov_487.616564:1-447 log: [pilon] frags shovill.bam: coverage 710 [pilon] Total Reads: 3524, Coverage: 710, minDepth: 178 [pilon] Confirmed 386 of 447 bases (86.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7407_length_447_cov_487.616564:1-447 [pilon] Processing NODE_4418_length_670_cov_0.936248:1-670 [pilon] NODE_4237_length_689_cov_5.218310:1-689 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 90, Coverage: 15, minDepth: 5 [pilon] Confirmed 584 of 689 bases (84.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4237_length_689_cov_5.218310:1-689 [pilon] Processing NODE_1404_length_1297_cov_2.232993:1-1297 [pilon] NODE_1291_length_1344_cov_13.142273:1-1344 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 408, Coverage: 30, minDepth: 8 [pilon] Confirmed 1117 of 1344 bases (83.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1291_length_1344_cov_13.142273:1-1344 [pilon] Processing NODE_2647_length_938_cov_29.831089:1-938 [pilon] NODE_14836_length_243_cov_7.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14836_length_243_cov_7.368852:1-243 [pilon] Processing NODE_14553_length_243_cov_9.893443:1-243 [pilon] NODE_14894_length_243_cov_6.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14894_length_243_cov_6.778689:1-243 [pilon] Processing NODE_6320_length_516_cov_0.612658:1-516 [pilon] NODE_12007_length_246_cov_16.680000:1-246 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 51, Coverage: 3, minDepth: 5 [pilon] Confirmed 49 of 246 bases (19.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12007_length_246_cov_16.680000:1-246 [pilon] Processing NODE_7592_length_438_cov_17.337539:1-438 [pilon] NODE_13524_length_243_cov_18.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13524_length_243_cov_18.139344:1-243 [pilon] Processing NODE_10208_length_317_cov_11.377551:1-317 [pilon] NODE_1904_length_1112_cov_2.624622:1-1112 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 84, Coverage: 10, minDepth: 5 [pilon] Confirmed 899 of 1112 bases (80.85%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1904_length_1112_cov_2.624622:1-1112 [pilon] Processing NODE_10933_length_287_cov_17.831325:1-287 [pilon] NODE_2257_length_1020_cov_1.711902:1-1020 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 48, Coverage: 6, minDepth: 5 [pilon] Confirmed 639 of 1020 bases (62.65%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2257_length_1020_cov_1.711902:1-1020 [pilon] Processing NODE_10356_length_311_cov_13.068421:1-311 [pilon] NODE_5589_length_571_cov_10.208889:1-571 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 109, Coverage: 23, minDepth: 6 [pilon] Confirmed 488 of 571 bases (85.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5589_length_571_cov_10.208889:1-571 [pilon] Processing NODE_3553_length_777_cov_6.858232:1-777 [pilon] NODE_1445_length_1283_cov_2.430293:1-1283 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 85, Coverage: 9, minDepth: 5 [pilon] Confirmed 852 of 1283 bases (66.41%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1445_length_1283_cov_2.430293:1-1283 [pilon] Processing NODE_5687_length_564_cov_11.830700:1-564 [pilon] NODE_9136_length_360_cov_15.920502:1-360 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 85, Coverage: 10, minDepth: 5 [pilon] Confirmed 243 of 360 bases (67.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9136_length_360_cov_15.920502:1-360 [pilon] Processing NODE_2526_length_962_cov_3.670630:1-962 [pilon] NODE_9048_length_363_cov_38.669421:1-363 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 204, Coverage: 36, minDepth: 9 [pilon] Confirmed 313 of 363 bases (86.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9048_length_363_cov_38.669421:1-363 [pilon] Processing NODE_13759_length_243_cov_15.975410:1-243 [pilon] NODE_8351_length_402_cov_26.167260:1-402 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 181, Coverage: 31, minDepth: 8 [pilon] Confirmed 257 of 402 bases (63.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8351_length_402_cov_26.167260:1-402 [pilon] Processing NODE_10399_length_309_cov_12.617021:1-309 [pilon] NODE_6732_length_488_cov_9.841962:1-488 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 90, Coverage: 5, minDepth: 5 [pilon] Confirmed 253 of 488 bases (51.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6732_length_488_cov_9.841962:1-488 [pilon] Processing NODE_3274_length_819_cov_11.014327:1-819 [pilon] NODE_3542_length_778_cov_13.502283:1-778 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 209, Coverage: 31, minDepth: 8 [pilon] Confirmed 610 of 778 bases (78.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3542_length_778_cov_13.502283:1-778 [pilon] Processing NODE_8107_length_413_cov_10.616438:1-413 [pilon] NODE_1130_length_1425_cov_17.958589:1-1425 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 551, Coverage: 37, minDepth: 9 [pilon] Confirmed 1337 of 1425 bases (93.82%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1130_length_1425_cov_17.958589:1-1425 [pilon] Processing NODE_10840_length_291_cov_10.052941:1-291 [pilon] NODE_12217_length_243_cov_36.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12217_length_243_cov_36.000000:1-243 [pilon] Processing NODE_6621_length_495_cov_56.377005:1-495 [pilon] NODE_10373_length_309_cov_34.537234:1-309 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 153, Coverage: 6, minDepth: 5 [pilon] Confirmed 184 of 309 bases (59.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10373_length_309_cov_34.537234:1-309 [pilon] Processing NODE_1985_length_1091_cov_2.252577:1-1091 [pilon] NODE_11047_length_282_cov_8.906832:1-282 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 37, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 282 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11047_length_282_cov_8.906832:1-282 [pilon] Processing NODE_3139_length_844_cov_3.744122:1-844 [pilon] NODE_1033_length_1478_cov_2.239499:1-1478 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 89, Coverage: 8, minDepth: 5 [pilon] Confirmed 1004 of 1478 bases (67.93%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1033_length_1478_cov_2.239499:1-1478 [pilon] Processing NODE_10383_length_309_cov_24.212766:1-309 [pilon] NODE_8122_length_412_cov_1.756014:1-412 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 214 of 412 bases (51.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8122_length_412_cov_1.756014:1-412 [pilon] Processing NODE_9832_length_333_cov_15.896226:1-333 [pilon] NODE_1014_length_1488_cov_21.150695:1-1488 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 630, Coverage: 55, minDepth: 14 [pilon] Confirmed 1197 of 1488 bases (80.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1014_length_1488_cov_21.150695:1-1488 [pilon] Processing NODE_7529_length_442_cov_0.956386:1-442 [pilon] NODE_14761_length_243_cov_8.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14761_length_243_cov_8.024590:1-243 [pilon] Processing NODE_6225_length_522_cov_35.271820:1-522 [pilon] NODE_289_length_2267_cov_2.401678:1-2267 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 135, Coverage: 8, minDepth: 5 [pilon] Confirmed 1403 of 2267 bases (61.89%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_289_length_2267_cov_2.401678:1-2267 [pilon] Processing NODE_10628_length_300_cov_19.351955:1-300 [pilon] NODE_1404_length_1297_cov_2.232993:1-1297 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 73, Coverage: 7, minDepth: 5 [pilon] Confirmed 705 of 1297 bases (54.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1404_length_1297_cov_2.232993:1-1297 [pilon] Processing NODE_2774_length_914_cov_1.813367:1-914 [pilon] NODE_8242_length_407_cov_1.059441:1-407 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 58 of 407 bases (14.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8242_length_407_cov_1.059441:1-407 [pilon] Processing NODE_121_length_2881_cov_22.232971:1-2881 [pilon] NODE_10840_length_291_cov_10.052941:1-291 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 39, Coverage: 5, minDepth: 5 [pilon] Confirmed 187 of 291 bases (64.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10840_length_291_cov_10.052941:1-291 [pilon] Processing NODE_4121_length_703_cov_1.163230:1-703 [pilon] NODE_10933_length_287_cov_17.831325:1-287 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 61, Coverage: 5, minDepth: 5 [pilon] Confirmed 151 of 287 bases (52.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10933_length_287_cov_17.831325:1-287 [pilon] Processing NODE_8764_length_379_cov_12.565891:1-379 [pilon] NODE_3274_length_819_cov_11.014327:1-819 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 213, Coverage: 21, minDepth: 5 [pilon] Confirmed 788 of 819 bases (96.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3274_length_819_cov_11.014327:1-819 [pilon] Processing NODE_13241_length_243_cov_20.721311:1-243 [pilon] NODE_4418_length_670_cov_0.936248:1-670 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 17, Coverage: 3, minDepth: 5 [pilon] Confirmed 151 of 670 bases (22.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4418_length_670_cov_0.936248:1-670 [pilon] Processing NODE_11130_length_279_cov_9.031646:1-279 [pilon] NODE_10208_length_317_cov_11.377551:1-317 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 60, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 317 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10208_length_317_cov_11.377551:1-317 [pilon] Processing NODE_8775_length_378_cov_20.571984:1-378 [pilon] NODE_6320_length_516_cov_0.612658:1-516 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 516 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6320_length_516_cov_0.612658:1-516 [pilon] Processing NODE_1848_length_1130_cov_1.241824:1-1130 [pilon] NODE_7592_length_438_cov_17.337539:1-438 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 137, Coverage: 25, minDepth: 6 [pilon] Confirmed 377 of 438 bases (86.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7592_length_438_cov_17.337539:1-438 [pilon] Processing NODE_4244_length_688_cov_16.679012:1-688 [pilon] NODE_2526_length_962_cov_3.670630:1-962 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 110, Coverage: 10, minDepth: 5 [pilon] Confirmed 790 of 962 bases (82.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2526_length_962_cov_3.670630:1-962 [pilon] Processing NODE_10605_length_300_cov_29.715084:1-300 [pilon] NODE_12151_length_243_cov_39.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 94, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12151_length_243_cov_39.172131:1-243 [pilon] Processing NODE_2800_length_909_cov_12.747462:1-909 [pilon] NODE_2647_length_938_cov_29.831089:1-938 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 535, Coverage: 56, minDepth: 14 [pilon] Confirmed 866 of 938 bases (92.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2647_length_938_cov_29.831089:1-938 [pilon] Processing NODE_12181_length_243_cov_37.491803:1-243 [pilon] NODE_3553_length_777_cov_6.858232:1-777 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 107, Coverage: 7, minDepth: 5 [pilon] Confirmed 562 of 777 bases (72.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3553_length_777_cov_6.858232:1-777 [pilon] Processing NODE_11371_length_269_cov_6.324324:1-269 [pilon] NODE_14553_length_243_cov_9.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14553_length_243_cov_9.893443:1-243 [pilon] Processing NODE_12994_length_243_cov_22.991803:1-243 [pilon] NODE_5687_length_564_cov_11.830700:1-564 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 118, Coverage: 12, minDepth: 5 [pilon] Confirmed 303 of 564 bases (53.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5687_length_564_cov_11.830700:1-564 [pilon] Processing NODE_11008_length_284_cov_15.478528:1-284 [pilon] NODE_10356_length_311_cov_13.068421:1-311 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 55, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 311 bases (41.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10356_length_311_cov_13.068421:1-311 [pilon] Processing NODE_5688_length_564_cov_10.413093:1-564 [pilon] NODE_13759_length_243_cov_15.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13759_length_243_cov_15.975410:1-243 [pilon] Processing NODE_11834_length_252_cov_12.587786:1-252 [pilon] NODE_10399_length_309_cov_12.617021:1-309 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 56, Coverage: 8, minDepth: 5 [pilon] Confirmed 232 of 309 bases (75.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10399_length_309_cov_12.617021:1-309 [pilon] Processing NODE_9382_length_351_cov_15.621739:1-351 [pilon] NODE_8107_length_413_cov_10.616438:1-413 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 57, Coverage: 3, minDepth: 5 [pilon] Confirmed 159 of 413 bases (38.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8107_length_413_cov_10.616438:1-413 [pilon] Processing NODE_3489_length_787_cov_2.061562:1-787 [pilon] NODE_1985_length_1091_cov_2.252577:1-1091 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 721 of 1091 bases (66.09%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1985_length_1091_cov_2.252577:1-1091 [pilon] Processing NODE_3074_length_858_cov_24.690638:1-858 [pilon] NODE_10383_length_309_cov_24.212766:1-309 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 107, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 309 bases (48.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10383_length_309_cov_24.212766:1-309 [pilon] Processing NODE_6906_length_477_cov_16.994382:1-477 [pilon] NODE_9832_length_333_cov_15.896226:1-333 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 59, Coverage: 2, minDepth: 5 [pilon] Confirmed 99 of 333 bases (29.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9832_length_333_cov_15.896226:1-333 [pilon] Processing NODE_501_length_1911_cov_19.365922:1-1911 [pilon] NODE_6621_length_495_cov_56.377005:1-495 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 470, Coverage: 78, minDepth: 20 [pilon] Confirmed 421 of 495 bases (85.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6621_length_495_cov_56.377005:1-495 [pilon] Processing NODE_5560_length_573_cov_15.988938:1-573 [pilon] NODE_4121_length_703_cov_1.163230:1-703 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 392 of 703 bases (55.76%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4121_length_703_cov_1.163230:1-703 [pilon] Processing NODE_5340_length_589_cov_33.694444:1-589 [pilon] NODE_3139_length_844_cov_3.744122:1-844 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 59, Coverage: 9, minDepth: 5 [pilon] Confirmed 496 of 844 bases (58.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3139_length_844_cov_3.744122:1-844 [pilon] Processing NODE_14197_length_243_cov_12.631148:1-243 [pilon] NODE_2774_length_914_cov_1.813367:1-914 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 42, Coverage: 6, minDepth: 5 [pilon] Confirmed 662 of 914 bases (72.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2774_length_914_cov_1.813367:1-914 [pilon] Processing NODE_10520_length_303_cov_34.516484:1-303 [pilon] NODE_7529_length_442_cov_0.956386:1-442 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 21, Coverage: 6, minDepth: 5 [pilon] Confirmed 262 of 442 bases (59.28%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7529_length_442_cov_0.956386:1-442 [pilon] Processing NODE_12328_length_243_cov_32.622951:1-243 [pilon] NODE_8764_length_379_cov_12.565891:1-379 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 64, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 379 bases (34.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8764_length_379_cov_12.565891:1-379 [pilon] Processing NODE_11002_length_284_cov_34.134969:1-284 [pilon] NODE_13241_length_243_cov_20.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13241_length_243_cov_20.721311:1-243 [pilon] Processing NODE_6277_length_519_cov_22.839196:1-519 [pilon] NODE_6225_length_522_cov_35.271820:1-522 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 342, Coverage: 35, minDepth: 9 [pilon] Confirmed 415 of 522 bases (79.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6225_length_522_cov_35.271820:1-522 [pilon] Processing NODE_7865_length_424_cov_16.089109:1-424 [pilon] NODE_10628_length_300_cov_19.351955:1-300 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 56, Coverage: 7, minDepth: 5 [pilon] Confirmed 176 of 300 bases (58.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10628_length_300_cov_19.351955:1-300 [pilon] Processing NODE_4259_length_687_cov_9.879859:1-687 [pilon] NODE_8775_length_378_cov_20.571984:1-378 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 140, Coverage: 20, minDepth: 5 [pilon] Confirmed 301 of 378 bases (79.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8775_length_378_cov_20.571984:1-378 [pilon] Processing NODE_13817_length_243_cov_15.524590:1-243 [pilon] NODE_11130_length_279_cov_9.031646:1-279 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 36, Coverage: 3, minDepth: 5 [pilon] Confirmed 63 of 279 bases (22.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11130_length_279_cov_9.031646:1-279 [pilon] Processing NODE_12306_length_243_cov_32.991803:1-243 [pilon] NODE_11371_length_269_cov_6.324324:1-269 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 22, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 269 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11371_length_269_cov_6.324324:1-269 [pilon] Processing NODE_11869_length_250_cov_18.441860:1-250 [pilon] NODE_12994_length_243_cov_22.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12994_length_243_cov_22.991803:1-243 [pilon] Processing NODE_8292_length_405_cov_8.235915:1-405 [pilon] NODE_12181_length_243_cov_37.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12181_length_243_cov_37.491803:1-243 [pilon] Processing NODE_12380_length_243_cov_31.442623:1-243 [pilon] NODE_6906_length_477_cov_16.994382:1-477 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 140, Coverage: 13, minDepth: 5 [pilon] Confirmed 369 of 477 bases (77.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_2800_length_909_cov_12.747462:1-909 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 238, Coverage: 33, minDepth: 8 [pilon] Confirmed 596 of 909 bases (65.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6906_length_477_cov_16.994382:1-477 [pilon] Finished processing NODE_2800_length_909_cov_12.747462:1-909 [pilon] Processing NODE_3156_length_841_cov_18.462500:1-841 [pilon] Processing NODE_3164_length_839_cov_3.189415:1-839 [pilon] NODE_1848_length_1130_cov_1.241824:1-1130 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 46, Coverage: 5, minDepth: 5 [pilon] Confirmed 584 of 1130 bases (51.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1848_length_1130_cov_1.241824:1-1130 [pilon] Processing NODE_1670_length_1193_cov_1.561567:1-1193 [pilon] NODE_4244_length_688_cov_16.679012:1-688 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 242, Coverage: 23, minDepth: 6 [pilon] Confirmed 500 of 688 bases (72.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4244_length_688_cov_16.679012:1-688 [pilon] Processing NODE_8529_length_392_cov_41.974170:1-392 [pilon] NODE_121_length_2881_cov_22.232971:1-2881 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 1520, Coverage: 46, minDepth: 12 [pilon] Confirmed 2637 of 2881 bases (91.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_121_length_2881_cov_22.232971:1-2881 [pilon] Processing NODE_8693_length_382_cov_53.509579:1-382 [pilon] NODE_10605_length_300_cov_29.715084:1-300 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 132, Coverage: 11, minDepth: 5 [pilon] Confirmed 233 of 300 bases (77.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10605_length_300_cov_29.715084:1-300 [pilon] Processing NODE_2737_length_921_cov_2.435000:1-921 [pilon] NODE_11008_length_284_cov_15.478528:1-284 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 53, Coverage: 5, minDepth: 5 [pilon] Confirmed 186 of 284 bases (65.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11008_length_284_cov_15.478528:1-284 [pilon] Processing NODE_8360_length_402_cov_17.491103:1-402 [pilon] NODE_11834_length_252_cov_12.587786:1-252 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 41, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11834_length_252_cov_12.587786:1-252 [pilon] Processing NODE_14878_length_243_cov_6.918033:1-243 [pilon] NODE_9382_length_351_cov_15.621739:1-351 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 58, Coverage: 3, minDepth: 5 [pilon] Confirmed 118 of 351 bases (33.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9382_length_351_cov_15.621739:1-351 [pilon] Processing NODE_13974_length_243_cov_14.286885:1-243 [pilon] NODE_5688_length_564_cov_10.413093:1-564 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 114, Coverage: 14, minDepth: 5 [pilon] Confirmed 339 of 564 bases (60.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5688_length_564_cov_10.413093:1-564 [pilon] Processing NODE_2374_length_996_cov_19.178286:1-996 [pilon] NODE_5340_length_589_cov_33.694444:1-589 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 373, Coverage: 63, minDepth: 16 [pilon] Confirmed 428 of 589 bases (72.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5340_length_589_cov_33.694444:1-589 [pilon] NODE_3489_length_787_cov_2.061562:1-787 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 42, Coverage: 7, minDepth: 5 [pilon] Confirmed 635 of 787 bases (80.69%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3489_length_787_cov_2.061562:1-787 [pilon] Processing NODE_1177_length_1407_cov_26.031104:1-1407 [pilon] Processing NODE_7542_length_441_cov_18.856250:1-441 [pilon] NODE_501_length_1911_cov_19.365922:1-1911 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 888, Coverage: 56, minDepth: 14 [pilon] Confirmed 1603 of 1911 bases (83.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_501_length_1911_cov_19.365922:1-1911 [pilon] Processing NODE_3942_length_722_cov_6.217970:1-722 [pilon] NODE_3074_length_858_cov_24.690638:1-858 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 438, Coverage: 57, minDepth: 14 [pilon] Confirmed 569 of 858 bases (66.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3074_length_858_cov_24.690638:1-858 [pilon] Processing NODE_4330_length_678_cov_1.342908:1-678 [pilon] NODE_6277_length_519_cov_22.839196:1-519 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 225, Coverage: 35, minDepth: 9 [pilon] Confirmed 454 of 519 bases (87.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6277_length_519_cov_22.839196:1-519 [pilon] Processing NODE_9379_length_351_cov_17.213043:1-351 [pilon] NODE_11002_length_284_cov_34.134969:1-284 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 107, Coverage: 10, minDepth: 5 [pilon] Confirmed 190 of 284 bases (66.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11002_length_284_cov_34.134969:1-284 [pilon] Processing NODE_3288_length_817_cov_3.382184:1-817 [pilon] NODE_14197_length_243_cov_12.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14197_length_243_cov_12.631148:1-243 [pilon] Processing NODE_6983_length_473_cov_0.721591:1-473 [pilon] NODE_12328_length_243_cov_32.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 84, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12328_length_243_cov_32.622951:1-243 [pilon] Processing NODE_11590_length_261_cov_8.478571:1-261 [pilon] NODE_7865_length_424_cov_16.089109:1-424 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 94, Coverage: 13, minDepth: 5 [pilon] Confirmed 314 of 424 bases (74.06%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7865_length_424_cov_16.089109:1-424 [pilon] Processing NODE_1845_length_1131_cov_23.016832:1-1131 [pilon] NODE_5560_length_573_cov_15.988938:1-573 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 161, Coverage: 22, minDepth: 6 [pilon] Confirmed 465 of 573 bases (81.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5560_length_573_cov_15.988938:1-573 [pilon] Processing NODE_8275_length_405_cov_20.718310:1-405 [pilon] NODE_10520_length_303_cov_34.516484:1-303 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 146, Coverage: 19, minDepth: 5 [pilon] Confirmed 234 of 303 bases (77.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10520_length_303_cov_34.516484:1-303 [pilon] Processing NODE_8307_length_404_cov_15.657244:1-404 [pilon] NODE_4259_length_687_cov_9.879859:1-687 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 157, Coverage: 22, minDepth: 6 [pilon] Confirmed 499 of 687 bases (72.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4259_length_687_cov_9.879859:1-687 [pilon] Processing NODE_353_length_2119_cov_6.140641:1-2119 [pilon] NODE_3164_length_839_cov_3.189415:1-839 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 58, Coverage: 9, minDepth: 5 [pilon] Confirmed 483 of 839 bases (57.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3164_length_839_cov_3.189415:1-839 [pilon] Processing NODE_13509_length_243_cov_18.311475:1-243 [pilon] NODE_8292_length_405_cov_8.235915:1-405 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 57, Coverage: 10, minDepth: 5 [pilon] Confirmed 307 of 405 bases (75.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8292_length_405_cov_8.235915:1-405 [pilon] Processing NODE_12221_length_243_cov_35.721311:1-243 [pilon] NODE_13817_length_243_cov_15.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13817_length_243_cov_15.524590:1-243 [pilon] Processing NODE_13280_length_243_cov_20.360656:1-243 [pilon] NODE_1177_length_1407_cov_26.031104:1-1407 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 759, Coverage: 48, minDepth: 12 [pilon] Confirmed 1049 of 1407 bases (74.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1177_length_1407_cov_26.031104:1-1407 [pilon] Processing NODE_10978_length_285_cov_15.932927:1-285 [pilon] NODE_11869_length_250_cov_18.441860:1-250 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 44, Coverage: 4, minDepth: 5 [pilon] Confirmed 113 of 250 bases (45.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11869_length_250_cov_18.441860:1-250 [pilon] Processing NODE_6131_length_529_cov_25.274510:1-529 [pilon] NODE_9379_length_351_cov_17.213043:1-351 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 80, Coverage: 7, minDepth: 5 [pilon] Confirmed 206 of 351 bases (58.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9379_length_351_cov_17.213043:1-351 [pilon] Processing NODE_11759_length_255_cov_13.865672:1-255 [pilon] NODE_3288_length_817_cov_3.382184:1-817 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 59, Coverage: 9, minDepth: 5 [pilon] Confirmed 506 of 817 bases (61.93%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3288_length_817_cov_3.382184:1-817 [pilon] Processing NODE_9579_length_342_cov_24.398190:1-342 [pilon] NODE_12306_length_243_cov_32.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12306_length_243_cov_32.991803:1-243 [pilon] Processing NODE_9179_length_358_cov_12.864979:1-358 [pilon] NODE_12380_length_243_cov_31.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12380_length_243_cov_31.442623:1-243 [pilon] Processing NODE_2120_length_1053_cov_28.111588:1-1053 [pilon] NODE_14878_length_243_cov_6.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14878_length_243_cov_6.918033:1-243 [pilon] Processing NODE_5535_length_575_cov_4.345815:1-575 [pilon] NODE_8529_length_392_cov_41.974170:1-392 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 267, Coverage: 47, minDepth: 12 [pilon] Confirmed 326 of 392 bases (83.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8529_length_392_cov_41.974170:1-392 [pilon] Processing NODE_1816_length_1142_cov_1.693438:1-1142 [pilon] NODE_3156_length_841_cov_18.462500:1-841 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 350, Coverage: 46, minDepth: 12 [pilon] Confirmed 551 of 841 bases (65.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3156_length_841_cov_18.462500:1-841 [pilon] Processing NODE_10293_length_313_cov_41.020833:1-313 [pilon] NODE_8693_length_382_cov_53.509579:1-382 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 332, Coverage: 52, minDepth: 13 [pilon] Confirmed 352 of 382 bases (92.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8693_length_382_cov_53.509579:1-382 [pilon] Processing NODE_3382_length_800_cov_4.306333:1-800 [pilon] NODE_8360_length_402_cov_17.491103:1-402 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 113, Coverage: 9, minDepth: 5 [pilon] Confirmed 259 of 402 bases (64.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8360_length_402_cov_17.491103:1-402 [pilon] Processing NODE_14456_length_243_cov_10.631148:1-243 [pilon] NODE_1670_length_1193_cov_1.561567:1-1193 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 41, Coverage: 4, minDepth: 5 [pilon] Confirmed 534 of 1193 bases (44.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1670_length_1193_cov_1.561567:1-1193 [pilon] Processing NODE_3790_length_742_cov_1.243156:1-742 [pilon] NODE_2737_length_921_cov_2.435000:1-921 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 59, Coverage: 8, minDepth: 5 [pilon] Confirmed 669 of 921 bases (72.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2737_length_921_cov_2.435000:1-921 [pilon] Processing NODE_583_length_1826_cov_14.873314:1-1826 [pilon] NODE_7542_length_441_cov_18.856250:1-441 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 122, Coverage: 14, minDepth: 5 [pilon] Confirmed 251 of 441 bases (56.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7542_length_441_cov_18.856250:1-441 [pilon] Processing NODE_13923_length_243_cov_14.721311:1-243 [pilon] NODE_4330_length_678_cov_1.342908:1-678 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 249 of 678 bases (36.73%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4330_length_678_cov_1.342908:1-678 [pilon] Processing NODE_1051_length_1467_cov_35.064636:1-1467 [pilon] NODE_13974_length_243_cov_14.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13974_length_243_cov_14.286885:1-243 [pilon] Processing NODE_6912_length_477_cov_3.747191:1-477 [pilon] NODE_3942_length_722_cov_6.217970:1-722 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 94, Coverage: 14, minDepth: 5 [pilon] Confirmed 643 of 722 bases (89.06%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3942_length_722_cov_6.217970:1-722 [pilon] Processing NODE_3480_length_788_cov_2.743628:1-788 [pilon] NODE_2374_length_996_cov_19.178286:1-996 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 392, Coverage: 43, minDepth: 11 [pilon] Confirmed 921 of 996 bases (92.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2374_length_996_cov_19.178286:1-996 [pilon] Processing NODE_5444_length_581_cov_4.128261:1-581 [pilon] NODE_8307_length_404_cov_15.657244:1-404 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 103, Coverage: 7, minDepth: 5 [pilon] Confirmed 289 of 404 bases (71.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8307_length_404_cov_15.657244:1-404 [pilon] Processing NODE_5678_length_564_cov_26.571106:1-564 [pilon] NODE_13509_length_243_cov_18.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13509_length_243_cov_18.311475:1-243 [pilon] Processing NODE_5249_length_597_cov_1.724790:1-597 [pilon] NODE_6983_length_473_cov_0.721591:1-473 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 473 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6983_length_473_cov_0.721591:1-473 [pilon] Processing NODE_32_length_4487_cov_22.098030:1-4487 [pilon] NODE_11590_length_261_cov_8.478571:1-261 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 25, Coverage: 2, minDepth: 5 [pilon] Confirmed 23 of 261 bases (8.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11590_length_261_cov_8.478571:1-261 [pilon] Processing NODE_9025_length_365_cov_28.815574:1-365 [pilon] NODE_8275_length_405_cov_20.718310:1-405 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 142, Coverage: 20, minDepth: 5 [pilon] Confirmed 318 of 405 bases (78.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8275_length_405_cov_20.718310:1-405 [pilon] Processing NODE_13390_length_243_cov_19.418033:1-243 [pilon] NODE_1845_length_1131_cov_23.016832:1-1131 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 539, Coverage: 48, minDepth: 12 [pilon] Confirmed 1033 of 1131 bases (91.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1845_length_1131_cov_23.016832:1-1131 [pilon] Processing NODE_11534_length_262_cov_28.950355:1-262 [pilon] NODE_10978_length_285_cov_15.932927:1-285 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 60, Coverage: 5, minDepth: 5 [pilon] Confirmed 133 of 285 bases (46.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10978_length_285_cov_15.932927:1-285 [pilon] Processing NODE_1438_length_1285_cov_26.011168:1-1285 [pilon] NODE_11759_length_255_cov_13.865672:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 52, Coverage: 4, minDepth: 5 [pilon] Confirmed 115 of 255 bases (45.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11759_length_255_cov_13.865672:1-255 [pilon] Processing NODE_5898_length_548_cov_2.892272:1-548 [pilon] NODE_353_length_2119_cov_6.140641:1-2119 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 352, Coverage: 17, minDepth: 5 [pilon] Confirmed 1855 of 2119 bases (87.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_353_length_2119_cov_6.140641:1-2119 [pilon] Processing NODE_4638_length_649_cov_0.623106:1-649 [pilon] NODE_9579_length_342_cov_24.398190:1-342 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 106, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 342 bases (38.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9579_length_342_cov_24.398190:1-342 [pilon] Processing NODE_10211_length_316_cov_32.610256:1-316 [pilon] NODE_12221_length_243_cov_35.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12221_length_243_cov_35.721311:1-243 [pilon] Processing NODE_6478_length_505_cov_6.203125:1-505 [pilon] NODE_13280_length_243_cov_20.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13280_length_243_cov_20.360656:1-243 [pilon] Processing NODE_13975_length_243_cov_14.286885:1-243 [pilon] NODE_6131_length_529_cov_25.274510:1-529 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 259, Coverage: 16, minDepth: 5 [pilon] Confirmed 283 of 529 bases (53.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6131_length_529_cov_25.274510:1-529 [pilon] Processing NODE_2407_length_989_cov_30.171659:1-989 [pilon] NODE_9179_length_358_cov_12.864979:1-358 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 68, Coverage: 17, minDepth: 5 [pilon] Confirmed 296 of 358 bases (82.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9179_length_358_cov_12.864979:1-358 [pilon] Processing NODE_9972_length_327_cov_14.291262:1-327 [pilon] NODE_2120_length_1053_cov_28.111588:1-1053 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 605, Coverage: 42, minDepth: 11 [pilon] Confirmed 741 of 1053 bases (70.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2120_length_1053_cov_28.111588:1-1053 [pilon] Processing NODE_9231_length_357_cov_8.512712:1-357 [pilon] NODE_10293_length_313_cov_41.020833:1-313 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 193, Coverage: 19, minDepth: 5 [pilon] Confirmed 268 of 313 bases (85.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10293_length_313_cov_41.020833:1-313 [pilon] NODE_3382_length_800_cov_4.306333:1-800 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 81, Coverage: 13, minDepth: 5 [pilon] Confirmed 653 of 800 bases (81.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_707_length_1699_cov_22.822560:1-1699 [pilon] Finished processing NODE_3382_length_800_cov_4.306333:1-800 [pilon] Processing NODE_4182_length_696_cov_2.499130:1-696 [pilon] NODE_5678_length_564_cov_26.571106:1-564 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 267, Coverage: 32, minDepth: 8 [pilon] Confirmed 415 of 564 bases (73.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5678_length_564_cov_26.571106:1-564 [pilon] Processing NODE_11188_length_276_cov_18.025806:1-276 [pilon] NODE_14456_length_243_cov_10.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14456_length_243_cov_10.631148:1-243 [pilon] Processing NODE_7466_length_445_cov_1.145062:1-445 [pilon] NODE_1816_length_1142_cov_1.693438:1-1142 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 65, Coverage: 7, minDepth: 5 [pilon] Confirmed 677 of 1142 bases (59.28%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1816_length_1142_cov_1.693438:1-1142 [pilon] Processing NODE_6804_length_483_cov_2.312155:1-483 [pilon] NODE_3790_length_742_cov_1.243156:1-742 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 205 of 742 bases (27.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3790_length_742_cov_1.243156:1-742 [pilon] Processing NODE_13312_length_243_cov_20.155738:1-243 [pilon] NODE_13923_length_243_cov_14.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13923_length_243_cov_14.721311:1-243 [pilon] Processing NODE_10968_length_285_cov_19.676829:1-285 [pilon] NODE_1051_length_1467_cov_35.064636:1-1467 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 1076, Coverage: 81, minDepth: 20 [pilon] Confirmed 1195 of 1467 bases (81.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1051_length_1467_cov_35.064636:1-1467 [pilon] Processing NODE_11017_length_283_cov_1.123457:1-283 [pilon] NODE_5535_length_575_cov_4.345815:1-575 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 44, Coverage: 10, minDepth: 5 [pilon] Confirmed 417 of 575 bases (72.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5535_length_575_cov_4.345815:1-575 [pilon] Processing NODE_4757_length_639_cov_2.544402:1-639 [pilon] NODE_583_length_1826_cov_14.873314:1-1826 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 572, Coverage: 35, minDepth: 9 [pilon] Confirmed 1602 of 1826 bases (87.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_583_length_1826_cov_14.873314:1-1826 [pilon] Processing NODE_9313_length_354_cov_8.806867:1-354 [pilon] NODE_5249_length_597_cov_1.724790:1-597 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 27, Coverage: 6, minDepth: 5 [pilon] Confirmed 346 of 597 bases (57.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5249_length_597_cov_1.724790:1-597 [pilon] Processing NODE_11157_length_277_cov_15.897436:1-277 [pilon] NODE_6912_length_477_cov_3.747191:1-477 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 38, Coverage: 9, minDepth: 5 [pilon] Confirmed 344 of 477 bases (72.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6912_length_477_cov_3.747191:1-477 [pilon] Processing NODE_4508_length_661_cov_1.970370:1-661 [pilon] NODE_3480_length_788_cov_2.743628:1-788 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 58, Coverage: 9, minDepth: 5 [pilon] Confirmed 468 of 788 bases (59.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3480_length_788_cov_2.743628:1-788 [pilon] Processing NODE_9829_length_333_cov_16.235849:1-333 [pilon] NODE_5444_length_581_cov_4.128261:1-581 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 48, Coverage: 11, minDepth: 5 [pilon] Confirmed 467 of 581 bases (80.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5444_length_581_cov_4.128261:1-581 [pilon] Processing NODE_554_length_1856_cov_13.341210:1-1856 [pilon] NODE_32_length_4487_cov_22.098030:1-4487 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 2017, Coverage: 32, minDepth: 8 [pilon] Confirmed 3516 of 4487 bases (78.36%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_32_length_4487_cov_22.098030:1-4487 [pilon] Processing NODE_5403_length_584_cov_4.732181:1-584 [pilon] NODE_9025_length_365_cov_28.815574:1-365 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 168, Coverage: 22, minDepth: 6 [pilon] Confirmed 334 of 365 bases (91.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9025_length_365_cov_28.815574:1-365 [pilon] Processing NODE_12073_length_244_cov_35.113821:1-244 [pilon] NODE_1438_length_1285_cov_26.011168:1-1285 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 732, Coverage: 61, minDepth: 15 [pilon] Confirmed 1049 of 1285 bases (81.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1438_length_1285_cov_26.011168:1-1285 [pilon] Processing NODE_9023_length_365_cov_43.245902:1-365 [pilon] NODE_13390_length_243_cov_19.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13390_length_243_cov_19.418033:1-243 [pilon] Processing NODE_5925_length_546_cov_3.390588:1-546 [pilon] NODE_4638_length_649_cov_0.623106:1-649 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 22 of 649 bases (3.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4638_length_649_cov_0.623106:1-649 [pilon] Processing NODE_13070_length_243_cov_22.237705:1-243 [pilon] NODE_11534_length_262_cov_28.950355:1-262 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 82, Coverage: 14, minDepth: 5 [pilon] Confirmed 243 of 262 bases (92.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11534_length_262_cov_28.950355:1-262 [pilon] Processing NODE_2390_length_991_cov_40.324138:1-991 [pilon] NODE_10211_length_316_cov_32.610256:1-316 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 135, Coverage: 9, minDepth: 5 [pilon] Confirmed 209 of 316 bases (66.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10211_length_316_cov_32.610256:1-316 [pilon] Processing NODE_12611_length_243_cov_27.442623:1-243 [pilon] NODE_5898_length_548_cov_2.892272:1-548 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 27, Coverage: 6, minDepth: 5 [pilon] Confirmed 281 of 548 bases (51.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5898_length_548_cov_2.892272:1-548 [pilon] Processing NODE_6649_length_494_cov_14.152815:1-494 [pilon] NODE_13975_length_243_cov_14.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13975_length_243_cov_14.286885:1-243 [pilon] Processing NODE_3272_length_819_cov_17.005731:1-819 [pilon] NODE_6478_length_505_cov_6.203125:1-505 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 78, Coverage: 13, minDepth: 5 [pilon] Confirmed 393 of 505 bases (77.82%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6478_length_505_cov_6.203125:1-505 [pilon] Processing NODE_8102_length_413_cov_39.729452:1-413 [pilon] NODE_2407_length_989_cov_30.171659:1-989 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 614, Coverage: 77, minDepth: 19 [pilon] Confirmed 779 of 989 bases (78.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2407_length_989_cov_30.171659:1-989 [pilon] Processing NODE_13401_length_243_cov_19.303279:1-243 [pilon] NODE_9972_length_327_cov_14.291262:1-327 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 69, Coverage: 10, minDepth: 5 [pilon] Confirmed 265 of 327 bases (81.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9972_length_327_cov_14.291262:1-327 [pilon] Processing NODE_6658_length_493_cov_11.094086:1-493 [pilon] NODE_707_length_1699_cov_22.822560:1-1699 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 825, Coverage: 55, minDepth: 14 [pilon] Confirmed 1561 of 1699 bases (91.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_707_length_1699_cov_22.822560:1-1699 [pilon] Processing NODE_2210_length_1031_cov_7.308791:1-1031 [pilon] NODE_9231_length_357_cov_8.512712:1-357 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 48, Coverage: 3, minDepth: 5 [pilon] Confirmed 123 of 357 bases (34.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9231_length_357_cov_8.512712:1-357 [pilon] Processing NODE_14332_length_243_cov_11.614754:1-243 [pilon] NODE_10968_length_285_cov_19.676829:1-285 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 59, Coverage: 2, minDepth: 5 [pilon] Confirmed 69 of 285 bases (24.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10968_length_285_cov_19.676829:1-285 [pilon] Processing NODE_10314_length_312_cov_26.465969:1-312 [pilon] NODE_11188_length_276_cov_18.025806:1-276 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 58, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11188_length_276_cov_18.025806:1-276 [pilon] Processing NODE_8974_length_368_cov_4.668016:1-368 [pilon] NODE_4182_length_696_cov_2.499130:1-696 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 326 of 696 bases (46.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4182_length_696_cov_2.499130:1-696 [pilon] Processing NODE_9126_length_360_cov_20.016736:1-360 [pilon] NODE_11017_length_283_cov_1.123457:1-283 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 283 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11017_length_283_cov_1.123457:1-283 [pilon] Processing NODE_8101_length_413_cov_49.595890:1-413 [pilon] NODE_13312_length_243_cov_20.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13312_length_243_cov_20.155738:1-243 [pilon] Processing NODE_9715_length_337_cov_23.611111:1-337 [pilon] NODE_7466_length_445_cov_1.145062:1-445 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 152 of 445 bases (34.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7466_length_445_cov_1.145062:1-445 [pilon] Processing NODE_14635_length_243_cov_9.163934:1-243 [pilon] NODE_6804_length_483_cov_2.312155:1-483 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 208 of 483 bases (43.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6804_length_483_cov_2.312155:1-483 [pilon] Processing NODE_12879_length_243_cov_24.229508:1-243 [pilon] NODE_11157_length_277_cov_15.897436:1-277 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 55, Coverage: 6, minDepth: 5 [pilon] Confirmed 168 of 277 bases (60.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11157_length_277_cov_15.897436:1-277 [pilon] Processing NODE_11656_length_258_cov_12.956204:1-258 [pilon] NODE_9313_length_354_cov_8.806867:1-354 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 46, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 354 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9313_length_354_cov_8.806867:1-354 [pilon] Processing NODE_1065_length_1458_cov_37.643979:1-1458 [pilon] NODE_4757_length_639_cov_2.544402:1-639 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 314 of 639 bases (49.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4757_length_639_cov_2.544402:1-639 [pilon] Processing NODE_6044_length_537_cov_2.757212:1-537 [pilon] NODE_4508_length_661_cov_1.970370:1-661 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 35, Coverage: 6, minDepth: 5 [pilon] Confirmed 502 of 661 bases (75.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4508_length_661_cov_1.970370:1-661 [pilon] Processing NODE_6789_length_484_cov_0.699725:1-484 [pilon] NODE_9829_length_333_cov_16.235849:1-333 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 69, Coverage: 2, minDepth: 5 [pilon] Confirmed 76 of 333 bases (22.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9829_length_333_cov_16.235849:1-333 [pilon] Processing NODE_11749_length_255_cov_18.395522:1-255 [pilon] NODE_554_length_1856_cov_13.341210:1-1856 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 574, Coverage: 27, minDepth: 7 [pilon] Confirmed 1582 of 1856 bases (85.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_554_length_1856_cov_13.341210:1-1856 [pilon] Processing NODE_9593_length_342_cov_15.248869:1-342 [pilon] NODE_5403_length_584_cov_4.732181:1-584 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 63, Coverage: 14, minDepth: 5 [pilon] Confirmed 505 of 584 bases (86.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5403_length_584_cov_4.732181:1-584 [pilon] Processing NODE_3799_length_741_cov_2.122581:1-741 [pilon] NODE_12073_length_244_cov_35.113821:1-244 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 89, Coverage: 7, minDepth: 5 [pilon] Confirmed 174 of 244 bases (71.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12073_length_244_cov_35.113821:1-244 [pilon] Processing NODE_3820_length_738_cov_21.270665:1-738 [pilon] NODE_5925_length_546_cov_3.390588:1-546 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 35, Coverage: 8, minDepth: 5 [pilon] Confirmed 393 of 546 bases (71.98%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5925_length_546_cov_3.390588:1-546 [pilon] Processing NODE_9546_length_344_cov_43.470852:1-344 [pilon] NODE_9023_length_365_cov_43.245902:1-365 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 274, Coverage: 32, minDepth: 8 [pilon] Confirmed 320 of 365 bases (87.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9023_length_365_cov_43.245902:1-365 [pilon] Processing NODE_7961_length_420_cov_10.193980:1-420 [pilon] NODE_3272_length_819_cov_17.005731:1-819 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 278, Coverage: 31, minDepth: 8 [pilon] Confirmed 708 of 819 bases (86.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3272_length_819_cov_17.005731:1-819 [pilon] Processing NODE_8348_length_402_cov_32.626335:1-402 [pilon] NODE_12611_length_243_cov_27.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12611_length_243_cov_27.442623:1-243 [pilon] Processing NODE_6897_length_477_cov_34.160112:1-477 [pilon] NODE_13070_length_243_cov_22.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13070_length_243_cov_22.237705:1-243 [pilon] Processing NODE_3345_length_806_cov_18.570803:1-806 [pilon] NODE_13401_length_243_cov_19.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13401_length_243_cov_19.303279:1-243 [pilon] Processing NODE_7546_length_441_cov_16.975000:1-441 [pilon] NODE_14332_length_243_cov_11.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14332_length_243_cov_11.614754:1-243 [pilon] Processing NODE_14252_length_243_cov_12.237705:1-243 [pilon] NODE_6649_length_494_cov_14.152815:1-494 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 118, Coverage: 10, minDepth: 5 [pilon] Confirmed 307 of 494 bases (62.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6649_length_494_cov_14.152815:1-494 [pilon] Processing NODE_5856_length_551_cov_2.590698:1-551 [pilon] NODE_2390_length_991_cov_40.324138:1-991 log: [pilon] frags shovill.bam: coverage 103 [pilon] Total Reads: 917, Coverage: 103, minDepth: 26 [pilon] Confirmed 740 of 991 bases (74.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2390_length_991_cov_40.324138:1-991 [pilon] Processing NODE_10305_length_313_cov_1.052083:1-313 [pilon] NODE_8974_length_368_cov_4.668016:1-368 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 33, Coverage: 4, minDepth: 5 [pilon] Confirmed 128 of 368 bases (34.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8974_length_368_cov_4.668016:1-368 [pilon] Processing NODE_10065_length_323_cov_8.688119:1-323 [pilon] NODE_12879_length_243_cov_24.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12879_length_243_cov_24.229508:1-243 [pilon] Processing NODE_2635_length_941_cov_2.158537:1-941 [pilon] NODE_6658_length_493_cov_11.094086:1-493 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 97, Coverage: 17, minDepth: 5 [pilon] Confirmed 369 of 493 bases (74.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6658_length_493_cov_11.094086:1-493 [pilon] Processing NODE_10569_length_303_cov_6.703297:1-303 [pilon] NODE_8102_length_413_cov_39.729452:1-413 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 251, Coverage: 40, minDepth: 10 [pilon] Confirmed 325 of 413 bases (78.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8102_length_413_cov_39.729452:1-413 [pilon] Processing NODE_12548_length_243_cov_28.344262:1-243 [pilon] NODE_10314_length_312_cov_26.465969:1-312 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 85, Coverage: 5, minDepth: 5 [pilon] Confirmed 144 of 312 bases (46.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10314_length_312_cov_26.465969:1-312 [pilon] Processing NODE_6888_length_478_cov_10.476190:1-478 [pilon] NODE_2210_length_1031_cov_7.308791:1-1031 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 184, Coverage: 16, minDepth: 5 [pilon] Confirmed 945 of 1031 bases (91.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2210_length_1031_cov_7.308791:1-1031 [pilon] Processing NODE_1822_length_1138_cov_18.588004:1-1138 [pilon] NODE_9126_length_360_cov_20.016736:1-360 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 112, Coverage: 12, minDepth: 5 [pilon] Confirmed 231 of 360 bases (64.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9126_length_360_cov_20.016736:1-360 [pilon] Processing NODE_14490_length_243_cov_10.344262:1-243 [pilon] NODE_9715_length_337_cov_23.611111:1-337 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 126, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 337 bases (38.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9715_length_337_cov_23.611111:1-337 [pilon] Processing NODE_7548_length_441_cov_12.153125:1-441 [pilon] NODE_11656_length_258_cov_12.956204:1-258 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 38, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11656_length_258_cov_12.956204:1-258 [pilon] Processing NODE_248_length_2347_cov_20.100180:1-2347 [pilon] NODE_8101_length_413_cov_49.595890:1-413 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 326, Coverage: 58, minDepth: 15 [pilon] Confirmed 357 of 413 bases (86.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8101_length_413_cov_49.595890:1-413 [pilon] Processing NODE_8105_length_413_cov_15.688356:1-413 [pilon] NODE_14635_length_243_cov_9.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14635_length_243_cov_9.163934:1-243 [pilon] Processing NODE_2263_length_1018_cov_12.688963:1-1018 [pilon] NODE_11749_length_255_cov_18.395522:1-255 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 50, Coverage: 6, minDepth: 5 [pilon] Confirmed 163 of 255 bases (63.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11749_length_255_cov_18.395522:1-255 [pilon] Processing NODE_3082_length_857_cov_18.726902:1-857 [pilon] NODE_6789_length_484_cov_0.699725:1-484 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 242 of 484 bases (50.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6789_length_484_cov_0.699725:1-484 [pilon] Processing NODE_1463_length_1277_cov_8.230969:1-1277 [pilon] NODE_6044_length_537_cov_2.757212:1-537 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 29, Coverage: 7, minDepth: 5 [pilon] Confirmed 343 of 537 bases (63.87%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6044_length_537_cov_2.757212:1-537 [pilon] Processing NODE_9348_length_352_cov_15.086580:1-352 [pilon] NODE_9593_length_342_cov_15.248869:1-342 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 79, Coverage: 16, minDepth: 5 [pilon] Confirmed 292 of 342 bases (85.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9593_length_342_cov_15.248869:1-342 [pilon] Processing NODE_15013_length_243_cov_5.286885:1-243 [pilon] NODE_8348_length_402_cov_32.626335:1-402 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 188, Coverage: 20, minDepth: 5 [pilon] Confirmed 261 of 402 bases (64.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8348_length_402_cov_32.626335:1-402 [pilon] Processing NODE_195_length_2527_cov_2.384456:1-2527 [pilon] NODE_1065_length_1458_cov_37.643979:1-1458 log: [pilon] frags shovill.bam: coverage 83 [pilon] Total Reads: 1185, Coverage: 83, minDepth: 21 [pilon] Confirmed 1370 of 1458 bases (93.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1065_length_1458_cov_37.643979:1-1458 [pilon] Processing NODE_7536_length_441_cov_21.609375:1-441 [pilon] NODE_3820_length_738_cov_21.270665:1-738 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 289, Coverage: 29, minDepth: 7 [pilon] Confirmed 555 of 738 bases (75.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3820_length_738_cov_21.270665:1-738 [pilon] Processing NODE_10510_length_304_cov_12.557377:1-304 [pilon] NODE_7546_length_441_cov_16.975000:1-441 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 116, Coverage: 14, minDepth: 5 [pilon] Confirmed 369 of 441 bases (83.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7546_length_441_cov_16.975000:1-441 [pilon] Processing NODE_2198_length_1034_cov_5.624315:1-1034 [pilon] NODE_10305_length_313_cov_1.052083:1-313 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 313 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10305_length_313_cov_1.052083:1-313 [pilon] Processing NODE_9062_length_363_cov_23.855372:1-363 [pilon] NODE_3799_length_741_cov_2.122581:1-741 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 43, Coverage: 8, minDepth: 5 [pilon] Confirmed 395 of 741 bases (53.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3799_length_741_cov_2.122581:1-741 [pilon] Processing NODE_1606_length_1214_cov_8.849039:1-1214 [pilon] NODE_6888_length_478_cov_10.476190:1-478 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 103, Coverage: 14, minDepth: 5 [pilon] Confirmed 428 of 478 bases (89.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6888_length_478_cov_10.476190:1-478 [pilon] Processing NODE_4251_length_687_cov_32.180212:1-687 [pilon] NODE_7961_length_420_cov_10.193980:1-420 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 79, Coverage: 11, minDepth: 5 [pilon] Confirmed 252 of 420 bases (60.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7961_length_420_cov_10.193980:1-420 [pilon] Processing NODE_8407_length_399_cov_17.841727:1-399 [pilon] NODE_3345_length_806_cov_18.570803:1-806 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 292, Coverage: 33, minDepth: 8 [pilon] Confirmed 678 of 806 bases (84.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3345_length_806_cov_18.570803:1-806 [pilon] Processing NODE_8333_length_403_cov_1.847518:1-403 [pilon] NODE_6897_length_477_cov_34.160112:1-477 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 284, Coverage: 47, minDepth: 12 [pilon] Confirmed 374 of 477 bases (78.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6897_length_477_cov_34.160112:1-477 [pilon] Processing NODE_7885_length_423_cov_25.374172:1-423 [pilon] NODE_14252_length_243_cov_12.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14252_length_243_cov_12.237705:1-243 [pilon] Processing NODE_5257_length_596_cov_13.968421:1-596 [pilon] NODE_9546_length_344_cov_43.470852:1-344 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 212, Coverage: 34, minDepth: 9 [pilon] Confirmed 301 of 344 bases (87.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9546_length_344_cov_43.470852:1-344 [pilon] Processing NODE_8545_length_391_cov_37.566667:1-391 [pilon] NODE_2635_length_941_cov_2.158537:1-941 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 61, Coverage: 8, minDepth: 5 [pilon] Confirmed 723 of 941 bases (76.83%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2635_length_941_cov_2.158537:1-941 [pilon] Processing NODE_11798_length_252_cov_37.580153:1-252 [pilon] NODE_12548_length_243_cov_28.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12548_length_243_cov_28.344262:1-243 [pilon] Processing NODE_614_length_1788_cov_27.293341:1-1788 [pilon] NODE_10569_length_303_cov_6.703297:1-303 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 303 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10569_length_303_cov_6.703297:1-303 [pilon] Processing NODE_2582_length_949_cov_29.664251:1-949 [pilon] NODE_5856_length_551_cov_2.590698:1-551 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 385 of 551 bases (69.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5856_length_551_cov_2.590698:1-551 [pilon] Processing NODE_724_length_1686_cov_23.033227:1-1686 [pilon] NODE_10065_length_323_cov_8.688119:1-323 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 39, Coverage: 2, minDepth: 5 [pilon] Confirmed 7 of 323 bases (2.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10065_length_323_cov_8.688119:1-323 [pilon] Processing NODE_8365_length_402_cov_11.754448:1-402 [pilon] NODE_1822_length_1138_cov_18.588004:1-1138 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 505, Coverage: 48, minDepth: 12 [pilon] Confirmed 915 of 1138 bases (80.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1822_length_1138_cov_18.588004:1-1138 [pilon] Processing NODE_12711_length_243_cov_26.073770:1-243 [pilon] NODE_8105_length_413_cov_15.688356:1-413 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 106, Coverage: 12, minDepth: 5 [pilon] Confirmed 293 of 413 bases (70.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8105_length_413_cov_15.688356:1-413 [pilon] Processing NODE_33_length_4440_cov_8.994212:1-4440 [pilon] NODE_14490_length_243_cov_10.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14490_length_243_cov_10.344262:1-243 [pilon] Processing NODE_14630_length_243_cov_9.213115:1-243 [pilon] NODE_10510_length_304_cov_12.557377:1-304 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 46, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 304 bases (42.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10510_length_304_cov_12.557377:1-304 [pilon] Processing NODE_4548_length_657_cov_18.294776:1-657 [pilon] NODE_195_length_2527_cov_2.384456:1-2527 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 155, Coverage: 8, minDepth: 5 [pilon] Confirmed 1522 of 2527 bases (60.23%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_195_length_2527_cov_2.384456:1-2527 [pilon] Processing NODE_5153_length_606_cov_1.468041:1-606 [pilon] NODE_7548_length_441_cov_12.153125:1-441 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 72, Coverage: 8, minDepth: 5 [pilon] Confirmed 208 of 441 bases (47.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7548_length_441_cov_12.153125:1-441 [pilon] Processing NODE_4690_length_644_cov_3.372849:1-644 [pilon] NODE_2198_length_1034_cov_5.624315:1-1034 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 180, Coverage: 23, minDepth: 6 [pilon] Confirmed 756 of 1034 bases (73.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2198_length_1034_cov_5.624315:1-1034 [pilon] Processing NODE_1478_length_1271_cov_2.965217:1-1271 [pilon] NODE_9348_length_352_cov_15.086580:1-352 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 95, Coverage: 9, minDepth: 5 [pilon] Confirmed 280 of 352 bases (79.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9348_length_352_cov_15.086580:1-352 [pilon] Processing NODE_12564_length_243_cov_28.098361:1-243 [pilon] NODE_3082_length_857_cov_18.726902:1-857 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 306, Coverage: 36, minDepth: 9 [pilon] Confirmed 612 of 857 bases (71.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3082_length_857_cov_18.726902:1-857 [pilon] Processing NODE_12183_length_243_cov_37.393443:1-243 [pilon] NODE_9062_length_363_cov_23.855372:1-363 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 112, Coverage: 3, minDepth: 5 [pilon] Confirmed 126 of 363 bases (34.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9062_length_363_cov_23.855372:1-363 [pilon] Processing NODE_9235_length_356_cov_54.842553:1-356 [pilon] NODE_2263_length_1018_cov_12.688963:1-1018 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 256, Coverage: 25, minDepth: 6 [pilon] Confirmed 859 of 1018 bases (84.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2263_length_1018_cov_12.688963:1-1018 [pilon] Processing NODE_14482_length_243_cov_10.368852:1-243 [pilon] NODE_1463_length_1277_cov_8.230969:1-1277 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 253, Coverage: 16, minDepth: 5 [pilon] Confirmed 1159 of 1277 bases (90.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1463_length_1277_cov_8.230969:1-1277 [pilon] Processing NODE_1625_length_1209_cov_2.104779:1-1209 [pilon] NODE_4251_length_687_cov_32.180212:1-687 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 418, Coverage: 46, minDepth: 12 [pilon] Confirmed 543 of 687 bases (79.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4251_length_687_cov_32.180212:1-687 [pilon] Processing NODE_290_length_2254_cov_21.884669:1-2254 [pilon] NODE_248_length_2347_cov_20.100180:1-2347 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 1036, Coverage: 48, minDepth: 12 [pilon] Confirmed 2126 of 2347 bases (90.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_248_length_2347_cov_20.100180:1-2347 [pilon] Processing NODE_13794_length_243_cov_15.754098:1-243 [pilon] NODE_15013_length_243_cov_5.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15013_length_243_cov_5.286885:1-243 [pilon] Processing NODE_2439_length_980_cov_20.937136:1-980 [pilon] NODE_7536_length_441_cov_21.609375:1-441 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 157, Coverage: 18, minDepth: 5 [pilon] Confirmed 292 of 441 bases (66.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7536_length_441_cov_21.609375:1-441 [pilon] Processing NODE_1010_length_1490_cov_1.539080:1-1490 [pilon] NODE_1606_length_1214_cov_8.849039:1-1214 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 280, Coverage: 17, minDepth: 5 [pilon] Confirmed 1092 of 1214 bases (89.95%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1606_length_1214_cov_8.849039:1-1214 [pilon] Processing NODE_3740_length_749_cov_25.754777:1-749 [pilon] NODE_8407_length_399_cov_17.841727:1-399 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 107, Coverage: 16, minDepth: 5 [pilon] Confirmed 293 of 399 bases (73.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8407_length_399_cov_17.841727:1-399 [pilon] Processing NODE_13769_length_243_cov_15.893443:1-243 [pilon] NODE_5257_length_596_cov_13.968421:1-596 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 143, Coverage: 20, minDepth: 5 [pilon] Confirmed 466 of 596 bases (78.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5257_length_596_cov_13.968421:1-596 [pilon] Processing NODE_9739_length_336_cov_23.400000:1-336 [pilon] NODE_8333_length_403_cov_1.847518:1-403 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 233 of 403 bases (57.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8333_length_403_cov_1.847518:1-403 [pilon] Processing NODE_4949_length_622_cov_57.980040:1-622 [pilon] NODE_7885_length_423_cov_25.374172:1-423 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 181, Coverage: 18, minDepth: 5 [pilon] Confirmed 284 of 423 bases (67.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7885_length_423_cov_25.374172:1-423 [pilon] Processing NODE_8740_length_380_cov_51.173745:1-380 [pilon] NODE_1478_length_1271_cov_2.965217:1-1271 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 85, Coverage: 9, minDepth: 5 [pilon] Confirmed 906 of 1271 bases (71.28%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1478_length_1271_cov_2.965217:1-1271 [pilon] Processing NODE_2419_length_986_cov_29.767630:1-986 [pilon] NODE_11798_length_252_cov_37.580153:1-252 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 105, Coverage: 5, minDepth: 5 [pilon] Confirmed 157 of 252 bases (62.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11798_length_252_cov_37.580153:1-252 [pilon] Processing NODE_10169_length_318_cov_21.340102:1-318 [pilon] NODE_8545_length_391_cov_37.566667:1-391 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 241, Coverage: 34, minDepth: 9 [pilon] Confirmed 344 of 391 bases (87.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8545_length_391_cov_37.566667:1-391 [pilon] Processing NODE_1798_length_1147_cov_18.753411:1-1147 [pilon] NODE_8365_length_402_cov_11.754448:1-402 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 402 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8365_length_402_cov_11.754448:1-402 [pilon] Processing NODE_7113_length_465_cov_7.029070:1-465 [pilon] NODE_724_length_1686_cov_23.033227:1-1686 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 1023, Coverage: 39, minDepth: 10 [pilon] Confirmed 1321 of 1686 bases (78.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_724_length_1686_cov_23.033227:1-1686 [pilon] Processing NODE_1450_length_1280_cov_18.108714:1-1280 [pilon] NODE_5153_length_606_cov_1.468041:1-606 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 278 of 606 bases (45.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5153_length_606_cov_1.468041:1-606 [pilon] Processing NODE_5768_length_558_cov_6.897025:1-558 [pilon] NODE_2582_length_949_cov_29.664251:1-949 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 547, Coverage: 66, minDepth: 17 [pilon] Confirmed 679 of 949 bases (71.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2582_length_949_cov_29.664251:1-949 [pilon] Processing NODE_5930_length_546_cov_1.327059:1-546 [pilon] NODE_614_length_1788_cov_27.293341:1-1788 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 1155, Coverage: 60, minDepth: 15 [pilon] Confirmed 1586 of 1788 bases (88.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_614_length_1788_cov_27.293341:1-1788 [pilon] Processing NODE_10624_length_300_cov_21.446927:1-300 [pilon] NODE_12183_length_243_cov_37.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 110, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12183_length_243_cov_37.393443:1-243 [pilon] Processing NODE_2804_length_908_cov_30.645489:1-908 [pilon] NODE_12711_length_243_cov_26.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12711_length_243_cov_26.073770:1-243 [pilon] Processing NODE_11811_length_252_cov_21.541985:1-252 [pilon] NODE_9235_length_356_cov_54.842553:1-356 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 303, Coverage: 48, minDepth: 12 [pilon] Confirmed 322 of 356 bases (90.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9235_length_356_cov_54.842553:1-356 [pilon] Processing NODE_5933_length_545_cov_50.860849:1-545 [pilon] NODE_290_length_2254_cov_21.884669:1-2254 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 1179, Coverage: 61, minDepth: 15 [pilon] Confirmed 1944 of 2254 bases (86.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_290_length_2254_cov_21.884669:1-2254 [pilon] Processing NODE_12087_length_244_cov_15.959350:1-244 [pilon] NODE_4548_length_657_cov_18.294776:1-657 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 213, Coverage: 25, minDepth: 6 [pilon] Confirmed 532 of 657 bases (80.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4548_length_657_cov_18.294776:1-657 [pilon] Processing NODE_3122_length_848_cov_4.701513:1-848 [pilon] NODE_4690_length_644_cov_3.372849:1-644 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 50, Coverage: 10, minDepth: 5 [pilon] Confirmed 488 of 644 bases (75.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4690_length_644_cov_3.372849:1-644 [pilon] Processing NODE_8783_length_378_cov_16.175097:1-378 [pilon] NODE_14630_length_243_cov_9.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14630_length_243_cov_9.213115:1-243 [pilon] Processing NODE_6669_length_492_cov_24.258760:1-492 [pilon] NODE_33_length_4440_cov_8.994212:1-4440 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 934, Coverage: 27, minDepth: 7 [pilon] Confirmed 3490 of 4440 bases (78.60%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_33_length_4440_cov_8.994212:1-4440 [pilon] Processing NODE_4589_length_654_cov_19.093809:1-654 [pilon] NODE_14482_length_243_cov_10.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14482_length_243_cov_10.368852:1-243 [pilon] Processing NODE_14911_length_243_cov_6.573770:1-243 [pilon] NODE_12564_length_243_cov_28.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12564_length_243_cov_28.098361:1-243 [pilon] Processing NODE_1265_length_1356_cov_17.018623:1-1356 [pilon] NODE_13794_length_243_cov_15.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13794_length_243_cov_15.754098:1-243 [pilon] Processing NODE_5881_length_549_cov_16.946262:1-549 [pilon] NODE_1625_length_1209_cov_2.104779:1-1209 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 67, Coverage: 7, minDepth: 5 [pilon] Confirmed 690 of 1209 bases (57.07%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1625_length_1209_cov_2.104779:1-1209 [pilon] Processing NODE_12827_length_243_cov_24.786885:1-243 [pilon] NODE_2439_length_980_cov_20.937136:1-980 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 555, Coverage: 64, minDepth: 16 [pilon] Confirmed 744 of 980 bases (75.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2439_length_980_cov_20.937136:1-980 [pilon] Processing NODE_7049_length_468_cov_13.345821:1-468 [pilon] NODE_2419_length_986_cov_29.767630:1-986 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 670, Coverage: 42, minDepth: 11 [pilon] Confirmed 762 of 986 bases (77.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2419_length_986_cov_29.767630:1-986 [pilon] Processing NODE_6034_length_538_cov_1.163070:1-538 [pilon] NODE_5768_length_558_cov_6.897025:1-558 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 76, Coverage: 12, minDepth: 5 [pilon] Confirmed 434 of 558 bases (77.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5768_length_558_cov_6.897025:1-558 [pilon] Processing NODE_5984_length_542_cov_28.527316:1-542 [pilon] NODE_2804_length_908_cov_30.645489:1-908 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 589, Coverage: 66, minDepth: 17 [pilon] Confirmed 816 of 908 bases (89.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2804_length_908_cov_30.645489:1-908 [pilon] Processing NODE_8973_length_368_cov_9.716599:1-368 [pilon] NODE_1010_length_1490_cov_1.539080:1-1490 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 68, Coverage: 6, minDepth: 5 [pilon] Confirmed 806 of 1490 bases (54.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1010_length_1490_cov_1.539080:1-1490 [pilon] Processing NODE_10908_length_288_cov_16.868263:1-288 [pilon] NODE_3740_length_749_cov_25.754777:1-749 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 419, Coverage: 50, minDepth: 13 [pilon] Confirmed 649 of 749 bases (86.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3740_length_749_cov_25.754777:1-749 [pilon] Processing NODE_763_length_1652_cov_36.203788:1-1652 [pilon] NODE_5933_length_545_cov_50.860849:1-545 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 496, Coverage: 78, minDepth: 20 [pilon] Confirmed 439 of 545 bases (80.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5933_length_545_cov_50.860849:1-545 [pilon] Processing NODE_6780_length_484_cov_17.261708:1-484 [pilon] NODE_13769_length_243_cov_15.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13769_length_243_cov_15.893443:1-243 [pilon] Processing NODE_15041_length_242_cov_12.049587:1-242 [pilon] NODE_9739_length_336_cov_23.400000:1-336 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 67, Coverage: 4, minDepth: 5 [pilon] Confirmed 135 of 336 bases (40.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9739_length_336_cov_23.400000:1-336 [pilon] Processing NODE_13379_length_243_cov_19.540984:1-243 [pilon] NODE_4949_length_622_cov_57.980040:1-622 log: [pilon] frags shovill.bam: coverage 98 [pilon] Total Reads: 646, Coverage: 98, minDepth: 25 [pilon] Confirmed 530 of 622 bases (85.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4949_length_622_cov_57.980040:1-622 [pilon] Processing NODE_11894_length_249_cov_21.179688:1-249 [pilon] NODE_12087_length_244_cov_15.959350:1-244 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 39, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12087_length_244_cov_15.959350:1-244 [pilon] Processing NODE_12105_length_243_cov_48.016393:1-243 [pilon] NODE_10169_length_318_cov_21.340102:1-318 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 97, Coverage: 9, minDepth: 5 [pilon] Confirmed 210 of 318 bases (66.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10169_length_318_cov_21.340102:1-318 [pilon] Processing NODE_4342_length_676_cov_37.940541:1-676 [pilon] NODE_8740_length_380_cov_51.173745:1-380 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 298, Coverage: 48, minDepth: 12 [pilon] Confirmed 339 of 380 bases (89.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8740_length_380_cov_51.173745:1-380 [pilon] Processing NODE_3788_length_742_cov_7.011272:1-742 [pilon] NODE_10624_length_300_cov_21.446927:1-300 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 89, Coverage: 10, minDepth: 5 [pilon] Confirmed 215 of 300 bases (71.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10624_length_300_cov_21.446927:1-300 [pilon] Processing NODE_4923_length_624_cov_19.073559:1-624 [pilon] NODE_5930_length_546_cov_1.327059:1-546 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 546 bases (23.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5930_length_546_cov_1.327059:1-546 [pilon] Processing NODE_14951_length_243_cov_6.114754:1-243 [pilon] NODE_1450_length_1280_cov_18.108714:1-1280 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 522, Coverage: 33, minDepth: 8 [pilon] Confirmed 1074 of 1280 bases (83.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1450_length_1280_cov_18.108714:1-1280 [pilon] Processing NODE_11597_length_261_cov_5.164286:1-261 [pilon] NODE_1798_length_1147_cov_18.753411:1-1147 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 425, Coverage: 38, minDepth: 10 [pilon] Confirmed 982 of 1147 bases (85.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1798_length_1147_cov_18.753411:1-1147 [pilon] Processing NODE_10550_length_303_cov_13.065934:1-303 [pilon] NODE_7113_length_465_cov_7.029070:1-465 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 54, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 465 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7113_length_465_cov_7.029070:1-465 [pilon] Processing NODE_6958_length_474_cov_7.728045:1-474 [pilon] NODE_11811_length_252_cov_21.541985:1-252 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 66, Coverage: 6, minDepth: 5 [pilon] Confirmed 182 of 252 bases (72.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11811_length_252_cov_21.541985:1-252 [pilon] Processing NODE_8577_length_389_cov_55.343284:1-389 [pilon] NODE_8783_length_378_cov_16.175097:1-378 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 102, Coverage: 12, minDepth: 5 [pilon] Confirmed 300 of 378 bases (79.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8783_length_378_cov_16.175097:1-378 [pilon] Processing NODE_13277_length_243_cov_20.385246:1-243 [pilon] NODE_3122_length_848_cov_4.701513:1-848 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 85, Coverage: 13, minDepth: 5 [pilon] Confirmed 643 of 848 bases (75.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3122_length_848_cov_4.701513:1-848 [pilon] Processing NODE_8524_length_393_cov_7.783088:1-393 [pilon] NODE_4589_length_654_cov_19.093809:1-654 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 243, Coverage: 24, minDepth: 6 [pilon] Confirmed 501 of 654 bases (76.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4589_length_654_cov_19.093809:1-654 [pilon] Processing NODE_9511_length_345_cov_21.299107:1-345 [pilon] NODE_6669_length_492_cov_24.258760:1-492 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 229, Coverage: 27, minDepth: 7 [pilon] Confirmed 439 of 492 bases (89.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6669_length_492_cov_24.258760:1-492 [pilon] Processing NODE_453_length_1969_cov_2.490801:1-1969 [pilon] NODE_14911_length_243_cov_6.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14911_length_243_cov_6.573770:1-243 [pilon] Processing NODE_785_length_1632_cov_1.823296:1-1632 [pilon] NODE_6034_length_538_cov_1.163070:1-538 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 235 of 538 bases (43.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6034_length_538_cov_1.163070:1-538 [pilon] Processing NODE_7439_length_446_cov_29.433846:1-446 [pilon] NODE_5881_length_549_cov_16.946262:1-549 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 147, Coverage: 24, minDepth: 6 [pilon] Confirmed 377 of 549 bases (68.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5881_length_549_cov_16.946262:1-549 [pilon] Processing NODE_9561_length_343_cov_19.162162:1-343 [pilon] NODE_5984_length_542_cov_28.527316:1-542 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 297, Coverage: 33, minDepth: 8 [pilon] Confirmed 392 of 542 bases (72.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_1265_length_1356_cov_17.018623:1-1356 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 511, Coverage: 34, minDepth: 9 [pilon] Confirmed 996 of 1356 bases (73.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1265_length_1356_cov_17.018623:1-1356 [pilon] Finished processing NODE_5984_length_542_cov_28.527316:1-542 [pilon] Processing NODE_14450_length_243_cov_10.688525:1-243 [pilon] NODE_12827_length_243_cov_24.786885:1-243 log: [pilon] Processing NODE_1989_length_1089_cov_12.209711:1-1089 [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12827_length_243_cov_24.786885:1-243 [pilon] Processing NODE_10558_length_303_cov_9.324176:1-303 [pilon] NODE_6780_length_484_cov_17.261708:1-484 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 208, Coverage: 27, minDepth: 7 [pilon] Confirmed 300 of 484 bases (61.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6780_length_484_cov_17.261708:1-484 [pilon] Processing NODE_2941_length_883_cov_14.081365:1-883 [pilon] NODE_8973_length_368_cov_9.716599:1-368 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 65, Coverage: 4, minDepth: 5 [pilon] Confirmed 147 of 368 bases (39.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8973_length_368_cov_9.716599:1-368 [pilon] Processing NODE_5063_length_613_cov_48.837398:1-613 [pilon] NODE_7049_length_468_cov_13.345821:1-468 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 111, Coverage: 13, minDepth: 5 [pilon] Confirmed 396 of 468 bases (84.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7049_length_468_cov_13.345821:1-468 [pilon] Processing NODE_15127_length_204_cov_26.602410:1-204 [pilon] NODE_4342_length_676_cov_37.940541:1-676 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 499, Coverage: 57, minDepth: 14 [pilon] Confirmed 431 of 676 bases (63.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4342_length_676_cov_37.940541:1-676 [pilon] Processing NODE_5461_length_580_cov_1.965142:1-580 [pilon] NODE_12105_length_243_cov_48.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 91, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12105_length_243_cov_48.016393:1-243 [pilon] Processing NODE_14933_length_243_cov_6.360656:1-243 [pilon] NODE_15041_length_242_cov_12.049587:1-242 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 24, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 242 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15041_length_242_cov_12.049587:1-242 [pilon] Processing NODE_702_length_1703_cov_10.187105:1-1703 [pilon] NODE_763_length_1652_cov_36.203788:1-1652 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 1338, Coverage: 78, minDepth: 20 [pilon] Confirmed 1426 of 1652 bases (86.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_763_length_1652_cov_36.203788:1-1652 [pilon] Processing NODE_4777_length_637_cov_2.591085:1-637 [pilon] NODE_10908_length_288_cov_16.868263:1-288 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 59, Coverage: 3, minDepth: 5 [pilon] Confirmed 98 of 288 bases (34.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10908_length_288_cov_16.868263:1-288 [pilon] Processing NODE_9296_length_354_cov_17.201717:1-354 [pilon] NODE_11894_length_249_cov_21.179688:1-249 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 63, Coverage: 7, minDepth: 5 [pilon] Confirmed 187 of 249 bases (75.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11894_length_249_cov_21.179688:1-249 [pilon] Processing NODE_14971_length_243_cov_5.803279:1-243 [pilon] NODE_13379_length_243_cov_19.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13379_length_243_cov_19.540984:1-243 [pilon] Processing NODE_6442_length_507_cov_21.639896:1-507 [pilon] NODE_11597_length_261_cov_5.164286:1-261 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11597_length_261_cov_5.164286:1-261 [pilon] Processing NODE_5078_length_612_cov_3.014257:1-612 [pilon] NODE_3788_length_742_cov_7.011272:1-742 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 126, Coverage: 5, minDepth: 5 [pilon] Confirmed 283 of 742 bases (38.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3788_length_742_cov_7.011272:1-742 [pilon] Processing NODE_1732_length_1169_cov_8.144084:1-1169 [pilon] NODE_14951_length_243_cov_6.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14951_length_243_cov_6.114754:1-243 [pilon] Processing NODE_310_length_2221_cov_15.293333:1-2221 [pilon] NODE_453_length_1969_cov_2.490801:1-1969 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 142, Coverage: 9, minDepth: 5 [pilon] Confirmed 1659 of 1969 bases (84.26%) [pilon] Corrected 7 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_453_length_1969_cov_2.490801:1-1969 [pilon] NODE_4923_length_624_cov_19.073559:1-624 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 221, Coverage: 19, minDepth: 5 [pilon] Confirmed 463 of 624 bases (74.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_186_length_2556_cov_10.400821:1-2556 [pilon] Finished processing NODE_4923_length_624_cov_19.073559:1-624 [pilon] Processing NODE_13538_length_243_cov_18.008197:1-243 [pilon] NODE_10550_length_303_cov_13.065934:1-303 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 57, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 303 bases (42.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10550_length_303_cov_13.065934:1-303 [pilon] Processing NODE_13313_length_243_cov_20.139344:1-243 [pilon] NODE_6958_length_474_cov_7.728045:1-474 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 59, Coverage: 6, minDepth: 5 [pilon] Confirmed 223 of 474 bases (47.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6958_length_474_cov_7.728045:1-474 [pilon] Processing NODE_2154_length_1044_cov_18.601300:1-1044 [pilon] NODE_8577_length_389_cov_55.343284:1-389 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 325, Coverage: 56, minDepth: 14 [pilon] Confirmed 335 of 389 bases (86.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8577_length_389_cov_55.343284:1-389 [pilon] Processing NODE_7461_length_445_cov_7.712963:1-445 [pilon] NODE_13277_length_243_cov_20.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13277_length_243_cov_20.385246:1-243 [pilon] Processing NODE_13514_length_243_cov_18.270492:1-243 [pilon] NODE_9511_length_345_cov_21.299107:1-345 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 117, Coverage: 12, minDepth: 5 [pilon] Confirmed 228 of 345 bases (66.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9511_length_345_cov_21.299107:1-345 [pilon] Processing NODE_4378_length_673_cov_19.394928:1-673 [pilon] NODE_8524_length_393_cov_7.783088:1-393 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 45, Coverage: 11, minDepth: 5 [pilon] Confirmed 290 of 393 bases (73.79%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8524_length_393_cov_7.783088:1-393 [pilon] Processing NODE_158_length_2693_cov_21.666796:1-2693 [pilon] NODE_2941_length_883_cov_14.081365:1-883 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 311, Coverage: 20, minDepth: 5 [pilon] Confirmed 540 of 883 bases (61.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2941_length_883_cov_14.081365:1-883 [pilon] Processing NODE_10584_length_302_cov_14.685083:1-302 [pilon] NODE_9561_length_343_cov_19.162162:1-343 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 80, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 343 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9561_length_343_cov_19.162162:1-343 [pilon] Processing NODE_15037_length_243_cov_5.008197:1-243 [pilon] NODE_5461_length_580_cov_1.965142:1-580 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 261 of 580 bases (45.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5461_length_580_cov_1.965142:1-580 [pilon] Processing NODE_11460_length_264_cov_26.685315:1-264 [pilon] NODE_15127_length_204_cov_26.602410:1-204 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 46, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 204 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15127_length_204_cov_26.602410:1-204 [pilon] Processing NODE_7305_length_454_cov_1.507508:1-454 [pilon] NODE_7439_length_446_cov_29.433846:1-446 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 206, Coverage: 39, minDepth: 10 [pilon] Confirmed 378 of 446 bases (84.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7439_length_446_cov_29.433846:1-446 [pilon] Processing NODE_3763_length_745_cov_39.366987:1-745 [pilon] NODE_785_length_1632_cov_1.823296:1-1632 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 88, Coverage: 7, minDepth: 5 [pilon] Confirmed 1169 of 1632 bases (71.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_785_length_1632_cov_1.823296:1-1632 [pilon] Processing NODE_7435_length_446_cov_50.316923:1-446 [pilon] NODE_10558_length_303_cov_9.324176:1-303 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 303 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10558_length_303_cov_9.324176:1-303 [pilon] Processing NODE_2041_length_1075_cov_1.418239:1-1075 [pilon] NODE_14450_length_243_cov_10.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14450_length_243_cov_10.688525:1-243 [pilon] Processing NODE_15148_length_191_cov_56.142857:1-191 [pilon] NODE_1989_length_1089_cov_12.209711:1-1089 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 283, Coverage: 27, minDepth: 7 [pilon] Confirmed 953 of 1089 bases (87.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1989_length_1089_cov_12.209711:1-1089 [pilon] Processing NODE_5797_length_555_cov_20.082949:1-555 [pilon] NODE_4777_length_637_cov_2.591085:1-637 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 41, Coverage: 8, minDepth: 5 [pilon] Confirmed 492 of 637 bases (77.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4777_length_637_cov_2.591085:1-637 [pilon] Processing NODE_12419_length_243_cov_30.581967:1-243 [pilon] NODE_5063_length_613_cov_48.837398:1-613 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 557, Coverage: 78, minDepth: 20 [pilon] Confirmed 516 of 613 bases (84.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5063_length_613_cov_48.837398:1-613 [pilon] Processing NODE_12361_length_243_cov_31.819672:1-243 [pilon] NODE_14933_length_243_cov_6.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14933_length_243_cov_6.360656:1-243 [pilon] Processing NODE_8419_length_398_cov_51.223827:1-398 [pilon] NODE_186_length_2556_cov_10.400821:1-2556 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 685, Coverage: 29, minDepth: 7 [pilon] Confirmed 2191 of 2556 bases (85.72%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_186_length_2556_cov_10.400821:1-2556 [pilon] Processing NODE_14876_length_243_cov_6.926230:1-243 [pilon] NODE_14971_length_243_cov_5.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14971_length_243_cov_5.803279:1-243 [pilon] Processing NODE_279_length_2285_cov_16.660351:1-2285 [pilon] NODE_702_length_1703_cov_10.187105:1-1703 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 392, Coverage: 23, minDepth: 6 [pilon] Confirmed 842 of 1703 bases (49.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_702_length_1703_cov_10.187105:1-1703 [pilon] Processing NODE_10042_length_324_cov_11.463054:1-324 [pilon] NODE_5078_length_612_cov_3.014257:1-612 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 41, Coverage: 9, minDepth: 5 [pilon] Confirmed 450 of 612 bases (73.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5078_length_612_cov_3.014257:1-612 [pilon] Processing NODE_9805_length_333_cov_43.693396:1-333 [pilon] NODE_6442_length_507_cov_21.639896:1-507 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 191, Coverage: 24, minDepth: 6 [pilon] Confirmed 449 of 507 bases (88.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6442_length_507_cov_21.639896:1-507 [pilon] Processing NODE_10674_length_299_cov_15.724719:1-299 [pilon] NODE_9296_length_354_cov_17.201717:1-354 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 74, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 354 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9296_length_354_cov_17.201717:1-354 [pilon] Processing NODE_9848_length_333_cov_5.122642:1-333 [pilon] NODE_1732_length_1169_cov_8.144084:1-1169 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 224, Coverage: 12, minDepth: 5 [pilon] Confirmed 614 of 1169 bases (52.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1732_length_1169_cov_8.144084:1-1169 [pilon] Processing NODE_5176_length_603_cov_26.780083:1-603 [pilon] NODE_13538_length_243_cov_18.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13538_length_243_cov_18.008197:1-243 [pilon] Processing NODE_13166_length_243_cov_21.377049:1-243 [pilon] NODE_158_length_2693_cov_21.666796:1-2693 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 1366, Coverage: 49, minDepth: 12 [pilon] Confirmed 2265 of 2693 bases (84.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_158_length_2693_cov_21.666796:1-2693 [pilon] Processing NODE_2366_length_998_cov_27.647662:1-998 [pilon] NODE_15148_length_191_cov_56.142857:1-191 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 84, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 191 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15148_length_191_cov_56.142857:1-191 [pilon] Processing NODE_12810_length_243_cov_24.918033:1-243 [pilon] NODE_2041_length_1075_cov_1.418239:1-1075 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 47, Coverage: 6, minDepth: 5 [pilon] Confirmed 624 of 1075 bases (58.05%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2041_length_1075_cov_1.418239:1-1075 [pilon] Processing NODE_14181_length_243_cov_12.770492:1-243 [pilon] NODE_310_length_2221_cov_15.293333:1-2221 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 747, Coverage: 32, minDepth: 8 [pilon] Confirmed 1944 of 2221 bases (87.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_310_length_2221_cov_15.293333:1-2221 [pilon] Processing NODE_5874_length_549_cov_51.850467:1-549 [pilon] NODE_2154_length_1044_cov_18.601300:1-1044 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 408, Coverage: 38, minDepth: 10 [pilon] Confirmed 775 of 1044 bases (74.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2154_length_1044_cov_18.601300:1-1044 [pilon] Processing NODE_13325_length_243_cov_20.057377:1-243 [pilon] NODE_7461_length_445_cov_7.712963:1-445 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 82, Coverage: 9, minDepth: 5 [pilon] Confirmed 185 of 445 bases (41.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7461_length_445_cov_7.712963:1-445 [pilon] Processing NODE_368_length_2098_cov_1.960040:1-2098 [pilon] NODE_7305_length_454_cov_1.507508:1-454 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 231 of 454 bases (50.88%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7305_length_454_cov_1.507508:1-454 [pilon] Processing NODE_2373_length_996_cov_20.061714:1-996 [pilon] NODE_10584_length_302_cov_14.685083:1-302 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 44, Coverage: 6, minDepth: 5 [pilon] Confirmed 180 of 302 bases (59.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10584_length_302_cov_14.685083:1-302 [pilon] Processing NODE_13405_length_243_cov_19.278689:1-243 [pilon] NODE_13514_length_243_cov_18.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13514_length_243_cov_18.270492:1-243 [pilon] Processing NODE_2428_length_983_cov_26.457077:1-983 [pilon] NODE_13313_length_243_cov_20.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13313_length_243_cov_20.139344:1-243 [pilon] Processing NODE_5497_length_577_cov_68.245614:1-577 [pilon] NODE_4378_length_673_cov_19.394928:1-673 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 253, Coverage: 37, minDepth: 9 [pilon] Confirmed 531 of 673 bases (78.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4378_length_673_cov_19.394928:1-673 [pilon] Processing NODE_11173_length_276_cov_28.929032:1-276 [pilon] NODE_15037_length_243_cov_5.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15037_length_243_cov_5.008197:1-243 [pilon] Processing NODE_12840_length_243_cov_24.680328:1-243 [pilon] NODE_7435_length_446_cov_50.316923:1-446 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 381, Coverage: 62, minDepth: 16 [pilon] Confirmed 375 of 446 bases (84.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7435_length_446_cov_50.316923:1-446 [pilon] Processing NODE_482_length_1926_cov_39.070360:1-1926 [pilon] NODE_11460_length_264_cov_26.685315:1-264 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 78, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 264 bases (49.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11460_length_264_cov_26.685315:1-264 [pilon] Processing NODE_11657_length_258_cov_12.854015:1-258 [pilon] NODE_12419_length_243_cov_30.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12419_length_243_cov_30.581967:1-243 [pilon] Processing NODE_8846_length_375_cov_5.425197:1-375 [pilon] NODE_5797_length_555_cov_20.082949:1-555 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 185, Coverage: 21, minDepth: 5 [pilon] Confirmed 407 of 555 bases (73.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5797_length_555_cov_20.082949:1-555 [pilon] Processing NODE_12033_length_246_cov_10.248000:1-246 [pilon] NODE_14876_length_243_cov_6.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14876_length_243_cov_6.926230:1-243 [pilon] Processing NODE_1429_length_1290_cov_2.230111:1-1290 [pilon] NODE_12361_length_243_cov_31.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12361_length_243_cov_31.819672:1-243 [pilon] Processing NODE_2908_length_891_cov_3.945455:1-891 [pilon] NODE_3763_length_745_cov_39.366987:1-745 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 565, Coverage: 61, minDepth: 15 [pilon] Confirmed 674 of 745 bases (90.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3763_length_745_cov_39.366987:1-745 [pilon] Processing NODE_7970_length_419_cov_57.375839:1-419 [pilon] NODE_9805_length_333_cov_43.693396:1-333 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 220, Coverage: 27, minDepth: 7 [pilon] Confirmed 274 of 333 bases (82.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9805_length_333_cov_43.693396:1-333 [pilon] Processing NODE_5125_length_608_cov_3.628337:1-608 [pilon] NODE_10042_length_324_cov_11.463054:1-324 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 55, Coverage: 6, minDepth: 5 [pilon] Confirmed 231 of 324 bases (71.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10042_length_324_cov_11.463054:1-324 [pilon] Processing NODE_7033_length_469_cov_14.307471:1-469 [pilon] NODE_8419_length_398_cov_51.223827:1-398 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 312, Coverage: 55, minDepth: 14 [pilon] Confirmed 333 of 398 bases (83.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8419_length_398_cov_51.223827:1-398 [pilon] Processing NODE_6961_length_474_cov_1.575071:1-474 [pilon] NODE_12810_length_243_cov_24.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12810_length_243_cov_24.918033:1-243 [pilon] Processing NODE_8638_length_386_cov_15.316981:1-386 [pilon] NODE_10674_length_299_cov_15.724719:1-299 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 67, Coverage: 7, minDepth: 5 [pilon] Confirmed 217 of 299 bases (72.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10674_length_299_cov_15.724719:1-299 [pilon] Processing NODE_3954_length_721_cov_0.780000:1-721 [pilon] NODE_2373_length_996_cov_20.061714:1-996 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 417, Coverage: 37, minDepth: 9 [pilon] Confirmed 823 of 996 bases (82.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2373_length_996_cov_20.061714:1-996 [pilon] Processing NODE_4580_length_655_cov_5.941948:1-655 [pilon] NODE_279_length_2285_cov_16.660351:1-2285 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 827, Coverage: 40, minDepth: 10 [pilon] Confirmed 1967 of 2285 bases (86.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_279_length_2285_cov_16.660351:1-2285 [pilon] Processing NODE_611_length_1793_cov_1.612440:1-1793 [pilon] NODE_13325_length_243_cov_20.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13325_length_243_cov_20.057377:1-243 [pilon] Processing NODE_5822_length_554_cov_2.685912:1-554 [pilon] NODE_9848_length_333_cov_5.122642:1-333 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 333 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9848_length_333_cov_5.122642:1-333 [pilon] Processing NODE_4127_length_702_cov_3.851979:1-702 [pilon] NODE_5176_length_603_cov_26.780083:1-603 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 288, Coverage: 30, minDepth: 8 [pilon] Confirmed 449 of 603 bases (74.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5176_length_603_cov_26.780083:1-603 [pilon] Processing NODE_1685_length_1187_cov_26.717636:1-1187 [pilon] NODE_14181_length_243_cov_12.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14181_length_243_cov_12.770492:1-243 [pilon] Processing NODE_11867_length_250_cov_22.503876:1-250 [pilon] NODE_2366_length_998_cov_27.647662:1-998 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 559, Coverage: 59, minDepth: 15 [pilon] Confirmed 909 of 998 bases (91.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2366_length_998_cov_27.647662:1-998 [pilon] Processing NODE_6755_length_486_cov_10.797260:1-486 [pilon] NODE_13166_length_243_cov_21.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13166_length_243_cov_21.377049:1-243 [pilon] Processing NODE_299_length_2241_cov_19.910377:1-2241 [pilon] NODE_13405_length_243_cov_19.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13405_length_243_cov_19.278689:1-243 [pilon] Processing NODE_14674_length_243_cov_8.770492:1-243 [pilon] NODE_5874_length_549_cov_51.850467:1-549 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 531, Coverage: 50, minDepth: 13 [pilon] Confirmed 345 of 549 bases (62.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5874_length_549_cov_51.850467:1-549 [pilon] Processing NODE_5076_length_612_cov_5.594705:1-612 [pilon] NODE_2428_length_983_cov_26.457077:1-983 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 545, Coverage: 51, minDepth: 13 [pilon] Confirmed 830 of 983 bases (84.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2428_length_983_cov_26.457077:1-983 [pilon] Processing NODE_15252_length_126_cov_3.400000:1-126 [pilon] NODE_368_length_2098_cov_1.960040:1-2098 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 124, Coverage: 8, minDepth: 5 [pilon] Confirmed 1641 of 2098 bases (78.22%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_368_length_2098_cov_1.960040:1-2098 [pilon] Processing NODE_10429_length_307_cov_17.892473:1-307 [pilon] NODE_1429_length_1290_cov_2.230111:1-1290 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 84, Coverage: 8, minDepth: 5 [pilon] Confirmed 1155 of 1290 bases (89.53%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1429_length_1290_cov_2.230111:1-1290 [pilon] Processing NODE_5304_length_592_cov_21.588110:1-592 [pilon] NODE_12840_length_243_cov_24.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12840_length_243_cov_24.680328:1-243 [pilon] Processing NODE_4868_length_629_cov_19.228346:1-629 [pilon] NODE_11173_length_276_cov_28.929032:1-276 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 94, Coverage: 9, minDepth: 5 [pilon] Confirmed 213 of 276 bases (77.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11173_length_276_cov_28.929032:1-276 [pilon] Processing NODE_11451_length_265_cov_6.534722:1-265 [pilon] NODE_5125_length_608_cov_3.628337:1-608 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 41, Coverage: 8, minDepth: 5 [pilon] Confirmed 442 of 608 bases (72.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5125_length_608_cov_3.628337:1-608 [pilon] Processing NODE_2134_length_1050_cov_32.415501:1-1050 [pilon] NODE_11657_length_258_cov_12.854015:1-258 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 38, Coverage: 3, minDepth: 5 [pilon] Confirmed 65 of 258 bases (25.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11657_length_258_cov_12.854015:1-258 [pilon] Processing NODE_7199_length_460_cov_1.333333:1-460 [pilon] NODE_5497_length_577_cov_68.245614:1-577 log: [pilon] frags shovill.bam: coverage 114 [pilon] Total Reads: 708, Coverage: 114, minDepth: 29 [pilon] Confirmed 514 of 577 bases (89.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5497_length_577_cov_68.245614:1-577 [pilon] Processing NODE_10521_length_303_cov_31.368132:1-303 [pilon] NODE_8846_length_375_cov_5.425197:1-375 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 35, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 375 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8846_length_375_cov_5.425197:1-375 [pilon] Processing NODE_5032_length_616_cov_55.258586:1-616 [pilon] NODE_482_length_1926_cov_39.070360:1-1926 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 1713, Coverage: 79, minDepth: 20 [pilon] Confirmed 1697 of 1926 bases (88.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_482_length_1926_cov_39.070360:1-1926 [pilon] Processing NODE_5303_length_592_cov_30.314225:1-592 [pilon] NODE_8638_length_386_cov_15.316981:1-386 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 85, Coverage: 12, minDepth: 5 [pilon] Confirmed 240 of 386 bases (62.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8638_length_386_cov_15.316981:1-386 [pilon] Processing NODE_10871_length_289_cov_12.845238:1-289 [pilon] NODE_12033_length_246_cov_10.248000:1-246 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12033_length_246_cov_10.248000:1-246 [pilon] Processing NODE_4167_length_697_cov_11.423611:1-697 [pilon] NODE_2908_length_891_cov_3.945455:1-891 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 79, Coverage: 12, minDepth: 5 [pilon] Confirmed 660 of 891 bases (74.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2908_length_891_cov_3.945455:1-891 [pilon] Processing NODE_9010_length_366_cov_12.718367:1-366 [pilon] NODE_7970_length_419_cov_57.375839:1-419 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 399, Coverage: 63, minDepth: 16 [pilon] Confirmed 356 of 419 bases (84.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7970_length_419_cov_57.375839:1-419 [pilon] Processing NODE_8581_length_389_cov_33.802239:1-389 [pilon] NODE_4580_length_655_cov_5.941948:1-655 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 130, Coverage: 26, minDepth: 7 [pilon] Confirmed 489 of 655 bases (74.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4580_length_655_cov_5.941948:1-655 [pilon] Processing NODE_7844_length_425_cov_13.299342:1-425 [pilon] NODE_7033_length_469_cov_14.307471:1-469 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 130, Coverage: 15, minDepth: 5 [pilon] Confirmed 298 of 469 bases (63.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7033_length_469_cov_14.307471:1-469 [pilon] Processing NODE_11870_length_250_cov_10.534884:1-250 [pilon] NODE_5822_length_554_cov_2.685912:1-554 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 41, Coverage: 9, minDepth: 5 [pilon] Confirmed 425 of 554 bases (76.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5822_length_554_cov_2.685912:1-554 [pilon] Processing NODE_8795_length_377_cov_59.445312:1-377 [pilon] NODE_6961_length_474_cov_1.575071:1-474 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 199 of 474 bases (41.98%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6961_length_474_cov_1.575071:1-474 [pilon] Processing NODE_2643_length_939_cov_21.943765:1-939 [pilon] NODE_3954_length_721_cov_0.780000:1-721 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 80 of 721 bases (11.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3954_length_721_cov_0.780000:1-721 [pilon] Processing NODE_14231_length_243_cov_12.352459:1-243 [pilon] NODE_5304_length_592_cov_21.588110:1-592 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 232, Coverage: 26, minDepth: 7 [pilon] Confirmed 352 of 592 bases (59.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5304_length_592_cov_21.588110:1-592 [pilon] Processing NODE_2189_length_1037_cov_3.331878:1-1037 [pilon] NODE_611_length_1793_cov_1.612440:1-1793 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 82, Coverage: 6, minDepth: 5 [pilon] Confirmed 851 of 1793 bases (47.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_611_length_1793_cov_1.612440:1-1793 [pilon] Processing NODE_10513_length_304_cov_11.918033:1-304 [pilon] NODE_11867_length_250_cov_22.503876:1-250 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 71, Coverage: 4, minDepth: 5 [pilon] Confirmed 35 of 250 bases (14.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11867_length_250_cov_22.503876:1-250 [pilon] Processing NODE_3512_length_781_cov_26.181818:1-781 [pilon] NODE_1685_length_1187_cov_26.717636:1-1187 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 668, Coverage: 53, minDepth: 13 [pilon] Confirmed 1017 of 1187 bases (85.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1685_length_1187_cov_26.717636:1-1187 [pilon] Processing NODE_3481_length_788_cov_1.329835:1-788 [pilon] NODE_6755_length_486_cov_10.797260:1-486 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 93, Coverage: 20, minDepth: 5 [pilon] Confirmed 410 of 486 bases (84.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6755_length_486_cov_10.797260:1-486 [pilon] Processing NODE_9817_length_333_cov_23.886792:1-333 [pilon] NODE_2134_length_1050_cov_32.415501:1-1050 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 735, Coverage: 57, minDepth: 14 [pilon] Confirmed 969 of 1050 bases (92.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2134_length_1050_cov_32.415501:1-1050 [pilon] Processing NODE_1254_length_1363_cov_7.442834:1-1363 [pilon] NODE_4127_length_702_cov_3.851979:1-702 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 62, Coverage: 10, minDepth: 5 [pilon] Confirmed 577 of 702 bases (82.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4127_length_702_cov_3.851979:1-702 [pilon] Processing NODE_11428_length_267_cov_6.342466:1-267 [pilon] NODE_10871_length_289_cov_12.845238:1-289 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 42, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 289 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10871_length_289_cov_12.845238:1-289 [pilon] Processing NODE_1188_length_1403_cov_1.235569:1-1403 [pilon] NODE_14674_length_243_cov_8.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14674_length_243_cov_8.770492:1-243 [pilon] Processing NODE_12617_length_243_cov_27.368852:1-243 [pilon] NODE_299_length_2241_cov_19.910377:1-2241 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 1039, Coverage: 50, minDepth: 13 [pilon] Confirmed 1998 of 2241 bases (89.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_299_length_2241_cov_19.910377:1-2241 [pilon] Processing NODE_95_length_3051_cov_17.206826:1-3051 [pilon] NODE_15252_length_126_cov_3.400000:1-126 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 126 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15252_length_126_cov_3.400000:1-126 [pilon] Processing NODE_8838_length_375_cov_16.098425:1-375 [pilon] NODE_10429_length_307_cov_17.892473:1-307 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 59, Coverage: 5, minDepth: 5 [pilon] Confirmed 148 of 307 bases (48.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10429_length_307_cov_17.892473:1-307 [pilon] Processing NODE_6270_length_519_cov_37.809045:1-519 [pilon] NODE_7844_length_425_cov_13.299342:1-425 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 101, Coverage: 5, minDepth: 5 [pilon] Confirmed 220 of 425 bases (51.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7844_length_425_cov_13.299342:1-425 [pilon] Processing NODE_9798_length_334_cov_16.131455:1-334 [pilon] NODE_5076_length_612_cov_5.594705:1-612 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 66, Coverage: 12, minDepth: 5 [pilon] Confirmed 489 of 612 bases (79.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5076_length_612_cov_5.594705:1-612 [pilon] Processing NODE_12620_length_243_cov_27.295082:1-243 [pilon] NODE_4868_length_629_cov_19.228346:1-629 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 268, Coverage: 35, minDepth: 9 [pilon] Confirmed 546 of 629 bases (86.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4868_length_629_cov_19.228346:1-629 [pilon] Processing NODE_8506_length_393_cov_27.775735:1-393 [pilon] NODE_11451_length_265_cov_6.534722:1-265 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 23, Coverage: 2, minDepth: 5 [pilon] Confirmed 26 of 265 bases (9.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11451_length_265_cov_6.534722:1-265 [pilon] Processing NODE_14362_length_243_cov_11.327869:1-243 [pilon] NODE_7199_length_460_cov_1.333333:1-460 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 133 of 460 bases (28.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7199_length_460_cov_1.333333:1-460 [pilon] Processing NODE_10661_length_300_cov_5.301676:1-300 [pilon] NODE_8795_length_377_cov_59.445312:1-377 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 327, Coverage: 54, minDepth: 14 [pilon] Confirmed 338 of 377 bases (89.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8795_length_377_cov_59.445312:1-377 [pilon] Processing NODE_5342_length_589_cov_26.995726:1-589 [pilon] NODE_8581_length_389_cov_33.802239:1-389 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 207, Coverage: 23, minDepth: 6 [pilon] Confirmed 334 of 389 bases (85.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8581_length_389_cov_33.802239:1-389 [pilon] Processing NODE_3280_length_818_cov_8.863702:1-818 [pilon] NODE_5303_length_592_cov_30.314225:1-592 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 334, Coverage: 46, minDepth: 12 [pilon] Confirmed 521 of 592 bases (88.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5303_length_592_cov_30.314225:1-592 [pilon] Processing NODE_2316_length_1007_cov_2.934537:1-1007 [pilon] NODE_10521_length_303_cov_31.368132:1-303 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 123, Coverage: 5, minDepth: 5 [pilon] Confirmed 159 of 303 bases (52.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10521_length_303_cov_31.368132:1-303 [pilon] Processing NODE_9481_length_347_cov_1.646018:1-347 [pilon] NODE_9010_length_366_cov_12.718367:1-366 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 72, Coverage: 6, minDepth: 5 [pilon] Confirmed 243 of 366 bases (66.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9010_length_366_cov_12.718367:1-366 [pilon] Processing NODE_8170_length_410_cov_2.235294:1-410 [pilon] NODE_4167_length_697_cov_11.423611:1-697 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 153, Coverage: 28, minDepth: 7 [pilon] Confirmed 525 of 697 bases (75.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4167_length_697_cov_11.423611:1-697 [pilon] Processing NODE_4773_length_637_cov_19.565891:1-637 [pilon] NODE_5032_length_616_cov_55.258586:1-616 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 634, Coverage: 90, minDepth: 23 [pilon] Confirmed 439 of 616 bases (71.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5032_length_616_cov_55.258586:1-616 [pilon] Processing NODE_10008_length_324_cov_35.876847:1-324 [pilon] NODE_11870_length_250_cov_10.534884:1-250 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 29, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 250 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11870_length_250_cov_10.534884:1-250 [pilon] Processing NODE_2024_length_1080_cov_29.242961:1-1080 [pilon] NODE_14231_length_243_cov_12.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14231_length_243_cov_12.352459:1-243 [pilon] Processing NODE_7896_length_423_cov_11.761589:1-423 [pilon] NODE_2189_length_1037_cov_3.331878:1-1037 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 75, Coverage: 9, minDepth: 5 [pilon] Confirmed 821 of 1037 bases (79.17%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2189_length_1037_cov_3.331878:1-1037 [pilon] Processing NODE_3602_length_768_cov_6.664606:1-768 [pilon] NODE_2643_length_939_cov_21.943765:1-939 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 470, Coverage: 28, minDepth: 7 [pilon] Confirmed 715 of 939 bases (76.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2643_length_939_cov_21.943765:1-939 [pilon] Processing NODE_5188_length_603_cov_1.278008:1-603 [pilon] NODE_1254_length_1363_cov_7.442834:1-1363 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 268, Coverage: 23, minDepth: 6 [pilon] Confirmed 1261 of 1363 bases (92.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1254_length_1363_cov_7.442834:1-1363 [pilon] Processing NODE_14234_length_243_cov_12.344262:1-243 [pilon] NODE_1188_length_1403_cov_1.235569:1-1403 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 50, Coverage: 5, minDepth: 5 [pilon] Confirmed 503 of 1403 bases (35.85%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1188_length_1403_cov_1.235569:1-1403 [pilon] Processing NODE_4630_length_649_cov_21.647727:1-649 [pilon] NODE_10513_length_304_cov_11.918033:1-304 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 62, Coverage: 2, minDepth: 5 [pilon] Confirmed 62 of 304 bases (20.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10513_length_304_cov_11.918033:1-304 [pilon] Processing NODE_1572_length_1229_cov_21.052347:1-1229 [pilon] NODE_9798_length_334_cov_16.131455:1-334 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 69, Coverage: 12, minDepth: 5 [pilon] Confirmed 275 of 334 bases (82.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9798_length_334_cov_16.131455:1-334 [pilon] Processing NODE_10221_length_316_cov_11.743590:1-316 [pilon] NODE_9817_length_333_cov_23.886792:1-333 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 111, Coverage: 4, minDepth: 5 [pilon] Confirmed 134 of 333 bases (40.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9817_length_333_cov_23.886792:1-333 [pilon] Processing NODE_2543_length_957_cov_25.800239:1-957 [pilon] NODE_11428_length_267_cov_6.342466:1-267 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 23, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11428_length_267_cov_6.342466:1-267 [pilon] Processing NODE_6415_length_510_cov_1.233933:1-510 [pilon] NODE_3512_length_781_cov_26.181818:1-781 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 431, Coverage: 31, minDepth: 8 [pilon] Confirmed 614 of 781 bases (78.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3512_length_781_cov_26.181818:1-781 [pilon] Processing NODE_6898_length_477_cov_25.165730:1-477 [pilon] NODE_3481_length_788_cov_1.329835:1-788 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 28, Coverage: 4, minDepth: 5 [pilon] Confirmed 384 of 788 bases (48.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3481_length_788_cov_1.329835:1-788 [pilon] Processing NODE_10610_length_300_cov_26.620112:1-300 [pilon] NODE_12617_length_243_cov_27.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12617_length_243_cov_27.368852:1-243 [pilon] Processing NODE_12466_length_243_cov_29.663934:1-243 [pilon] NODE_5342_length_589_cov_26.995726:1-589 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 296, Coverage: 35, minDepth: 9 [pilon] Confirmed 500 of 589 bases (84.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5342_length_589_cov_26.995726:1-589 [pilon] Processing NODE_14045_length_243_cov_13.860656:1-243 [pilon] NODE_8838_length_375_cov_16.098425:1-375 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 88, Coverage: 9, minDepth: 5 [pilon] Confirmed 194 of 375 bases (51.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8838_length_375_cov_16.098425:1-375 [pilon] Processing NODE_205_length_2481_cov_11.781356:1-2481 [pilon] NODE_8506_length_393_cov_27.775735:1-393 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 158, Coverage: 19, minDepth: 5 [pilon] Confirmed 256 of 393 bases (65.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8506_length_393_cov_27.775735:1-393 [pilon] Processing NODE_9450_length_348_cov_13.810573:1-348 [pilon] NODE_12620_length_243_cov_27.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 77, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12620_length_243_cov_27.295082:1-243 [pilon] Processing NODE_5795_length_555_cov_30.843318:1-555 [pilon] NODE_95_length_3051_cov_17.206826:1-3051 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 1158, Coverage: 49, minDepth: 12 [pilon] Confirmed 2256 of 3051 bases (73.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_95_length_3051_cov_17.206826:1-3051 [pilon] Processing NODE_12162_length_243_cov_38.704918:1-243 [pilon] NODE_6270_length_519_cov_37.809045:1-519 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 358, Coverage: 41, minDepth: 10 [pilon] Confirmed 334 of 519 bases (64.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6270_length_519_cov_37.809045:1-519 [pilon] Processing NODE_3116_length_848_cov_33.485557:1-848 [pilon] NODE_14362_length_243_cov_11.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14362_length_243_cov_11.327869:1-243 [pilon] Processing NODE_13407_length_243_cov_19.245902:1-243 [pilon] NODE_14234_length_243_cov_12.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14234_length_243_cov_12.344262:1-243 [pilon] Processing NODE_2291_length_1013_cov_17.983184:1-1013 [pilon] NODE_2316_length_1007_cov_2.934537:1-1007 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 64, Coverage: 7, minDepth: 5 [pilon] Confirmed 685 of 1007 bases (68.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2316_length_1007_cov_2.934537:1-1007 [pilon] Processing NODE_1536_length_1247_cov_1.712256:1-1247 [pilon] NODE_10661_length_300_cov_5.301676:1-300 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 22, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10661_length_300_cov_5.301676:1-300 [pilon] Processing NODE_12538_length_243_cov_28.475410:1-243 [pilon] NODE_3280_length_818_cov_8.863702:1-818 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 155, Coverage: 19, minDepth: 5 [pilon] Confirmed 656 of 818 bases (80.20%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3280_length_818_cov_8.863702:1-818 [pilon] Processing NODE_9700_length_338_cov_29.755760:1-338 [pilon] NODE_9481_length_347_cov_1.646018:1-347 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 347 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9481_length_347_cov_1.646018:1-347 [pilon] Processing NODE_9514_length_345_cov_20.205357:1-345 [pilon] NODE_4630_length_649_cov_21.647727:1-649 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 279, Coverage: 42, minDepth: 11 [pilon] Confirmed 487 of 649 bases (75.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4630_length_649_cov_21.647727:1-649 [pilon] Processing NODE_10741_length_296_cov_21.645714:1-296 [pilon] NODE_4773_length_637_cov_19.565891:1-637 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 283, Coverage: 35, minDepth: 9 [pilon] Confirmed 576 of 637 bases (90.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4773_length_637_cov_19.565891:1-637 [pilon] Processing NODE_6339_length_514_cov_21.302799:1-514 [pilon] NODE_8170_length_410_cov_2.235294:1-410 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 139 of 410 bases (33.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8170_length_410_cov_2.235294:1-410 [pilon] Processing NODE_3678_length_758_cov_4.248038:1-758 [pilon] NODE_10008_length_324_cov_35.876847:1-324 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 154, Coverage: 8, minDepth: 5 [pilon] Confirmed 166 of 324 bases (51.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10008_length_324_cov_35.876847:1-324 [pilon] Processing NODE_9040_length_364_cov_23.016461:1-364 [pilon] NODE_3602_length_768_cov_6.664606:1-768 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 122, Coverage: 18, minDepth: 5 [pilon] Confirmed 631 of 768 bases (82.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3602_length_768_cov_6.664606:1-768 [pilon] Processing NODE_13283_length_243_cov_20.336066:1-243 [pilon] NODE_7896_length_423_cov_11.761589:1-423 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 91, Coverage: 2, minDepth: 5 [pilon] Confirmed 130 of 423 bases (30.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7896_length_423_cov_11.761589:1-423 [pilon] Processing NODE_14245_length_243_cov_12.270492:1-243 [pilon] NODE_5188_length_603_cov_1.278008:1-603 log: [pilon] NODE_6415_length_510_cov_1.233933:1-510 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 143 of 510 bases (28.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6415_length_510_cov_1.233933:1-510 [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 254 of 603 bases (42.12%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5188_length_603_cov_1.278008:1-603 [pilon] Processing NODE_13112_length_243_cov_21.860656:1-243 [pilon] Processing NODE_9026_length_365_cov_24.008197:1-365 [pilon] NODE_10221_length_316_cov_11.743590:1-316 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 56, Coverage: 4, minDepth: 5 [pilon] Confirmed 131 of 316 bases (41.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10221_length_316_cov_11.743590:1-316 [pilon] Processing NODE_7509_length_443_cov_0.940994:1-443 [pilon] NODE_2024_length_1080_cov_29.242961:1-1080 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 635, Coverage: 71, minDepth: 18 [pilon] Confirmed 721 of 1080 bases (66.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2024_length_1080_cov_29.242961:1-1080 [pilon] Processing NODE_13660_length_243_cov_16.901639:1-243 [pilon] NODE_14045_length_243_cov_13.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14045_length_243_cov_13.860656:1-243 [pilon] Processing NODE_14822_length_243_cov_7.475410:1-243 [pilon] NODE_1572_length_1229_cov_21.052347:1-1229 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 577, Coverage: 43, minDepth: 11 [pilon] Confirmed 986 of 1229 bases (80.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1572_length_1229_cov_21.052347:1-1229 [pilon] Processing NODE_13416_length_243_cov_19.139344:1-243 [pilon] NODE_6898_length_477_cov_25.165730:1-477 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 175, Coverage: 26, minDepth: 7 [pilon] Confirmed 361 of 477 bases (75.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6898_length_477_cov_25.165730:1-477 [pilon] Processing NODE_3262_length_821_cov_21.287143:1-821 [pilon] NODE_2543_length_957_cov_25.800239:1-957 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 567, Coverage: 29, minDepth: 7 [pilon] Confirmed 753 of 957 bases (78.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2543_length_957_cov_25.800239:1-957 [pilon] Processing NODE_5608_length_570_cov_4.360802:1-570 [pilon] NODE_10610_length_300_cov_26.620112:1-300 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 104, Coverage: 15, minDepth: 5 [pilon] Confirmed 247 of 300 bases (82.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10610_length_300_cov_26.620112:1-300 [pilon] Processing NODE_12012_length_246_cov_14.760000:1-246 [pilon] NODE_12466_length_243_cov_29.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12466_length_243_cov_29.663934:1-243 [pilon] Processing NODE_9877_length_330_cov_30.162679:1-330 [pilon] NODE_10741_length_296_cov_21.645714:1-296 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 99, Coverage: 6, minDepth: 5 [pilon] Confirmed 241 of 296 bases (81.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10741_length_296_cov_21.645714:1-296 [pilon] Processing NODE_8006_length_418_cov_1.730640:1-418 [pilon] NODE_2291_length_1013_cov_17.983184:1-1013 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 441, Coverage: 41, minDepth: 10 [pilon] Confirmed 731 of 1013 bases (72.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2291_length_1013_cov_17.983184:1-1013 [pilon] Processing NODE_3147_length_842_cov_26.424411:1-842 [pilon] NODE_9450_length_348_cov_13.810573:1-348 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 69, Coverage: 7, minDepth: 5 [pilon] Confirmed 255 of 348 bases (73.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9450_length_348_cov_13.810573:1-348 [pilon] Processing NODE_8175_length_410_cov_0.653979:1-410 [pilon] NODE_205_length_2481_cov_11.781356:1-2481 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 765, Coverage: 36, minDepth: 9 [pilon] Confirmed 2033 of 2481 bases (81.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_205_length_2481_cov_11.781356:1-2481 [pilon] Processing NODE_11308_length_271_cov_14.273333:1-271 [pilon] NODE_12162_length_243_cov_38.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12162_length_243_cov_38.704918:1-243 [pilon] Processing NODE_116_length_2905_cov_16.899066:1-2905 [pilon] NODE_13407_length_243_cov_19.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13407_length_243_cov_19.245902:1-243 [pilon] Processing NODE_11942_length_248_cov_7.433071:1-248 [pilon] NODE_5795_length_555_cov_30.843318:1-555 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 373, Coverage: 33, minDepth: 8 [pilon] Confirmed 309 of 555 bases (55.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5795_length_555_cov_30.843318:1-555 [pilon] Processing NODE_6989_length_472_cov_8.341880:1-472 [pilon] NODE_3116_length_848_cov_33.485557:1-848 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 591, Coverage: 72, minDepth: 18 [pilon] Confirmed 548 of 848 bases (64.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3116_length_848_cov_33.485557:1-848 [pilon] Processing NODE_3354_length_805_cov_2.824561:1-805 [pilon] NODE_13112_length_243_cov_21.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13112_length_243_cov_21.860656:1-243 [pilon] Processing NODE_464_length_1954_cov_25.711402:1-1954 [pilon] NODE_12538_length_243_cov_28.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 81, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12538_length_243_cov_28.475410:1-243 [pilon] Processing NODE_11584_length_261_cov_14.878571:1-261 [pilon] NODE_7509_length_443_cov_0.940994:1-443 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 166 of 443 bases (37.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7509_length_443_cov_0.940994:1-443 [pilon] Processing NODE_10993_length_285_cov_7.451220:1-285 [pilon] NODE_9700_length_338_cov_29.755760:1-338 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 147, Coverage: 14, minDepth: 5 [pilon] Confirmed 219 of 338 bases (64.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9700_length_338_cov_29.755760:1-338 [pilon] Processing NODE_819_length_1614_cov_3.643001:1-1614 [pilon] NODE_1536_length_1247_cov_1.712256:1-1247 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 52, Coverage: 5, minDepth: 5 [pilon] Confirmed 515 of 1247 bases (41.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1536_length_1247_cov_1.712256:1-1247 [pilon] Processing NODE_11661_length_258_cov_12.080292:1-258 [pilon] NODE_14822_length_243_cov_7.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14822_length_243_cov_7.475410:1-243 [pilon] Processing NODE_9278_length_354_cov_27.407725:1-354 [pilon] NODE_6339_length_514_cov_21.302799:1-514 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 219, Coverage: 25, minDepth: 6 [pilon] Confirmed 262 of 514 bases (50.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6339_length_514_cov_21.302799:1-514 [pilon] Processing NODE_7167_length_461_cov_41.555882:1-461 [pilon] NODE_9514_length_345_cov_20.205357:1-345 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 104, Coverage: 15, minDepth: 5 [pilon] Confirmed 262 of 345 bases (75.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9514_length_345_cov_20.205357:1-345 [pilon] Processing NODE_15178_length_171_cov_8.780000:1-171 [pilon] NODE_3678_length_758_cov_4.248038:1-758 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 63, Coverage: 10, minDepth: 5 [pilon] Confirmed 542 of 758 bases (71.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3678_length_758_cov_4.248038:1-758 [pilon] Processing NODE_10673_length_299_cov_16.095506:1-299 [pilon] NODE_13283_length_243_cov_20.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13283_length_243_cov_20.336066:1-243 [pilon] Processing NODE_884_length_1570_cov_9.394755:1-1570 [pilon] NODE_14245_length_243_cov_12.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14245_length_243_cov_12.270492:1-243 [pilon] Processing NODE_2846_length_903_cov_2.446292:1-903 [pilon] NODE_9040_length_364_cov_23.016461:1-364 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 161, Coverage: 24, minDepth: 6 [pilon] Confirmed 338 of 364 bases (92.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9040_length_364_cov_23.016461:1-364 [pilon] Processing NODE_518_length_1901_cov_29.393258:1-1901 [pilon] NODE_9026_length_365_cov_24.008197:1-365 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 133, Coverage: 19, minDepth: 5 [pilon] Confirmed 316 of 365 bases (86.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9026_length_365_cov_24.008197:1-365 [pilon] Processing NODE_2395_length_991_cov_14.139080:1-991 [pilon] NODE_13660_length_243_cov_16.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13660_length_243_cov_16.901639:1-243 [pilon] Processing NODE_3371_length_802_cov_4.538913:1-802 [pilon] NODE_8006_length_418_cov_1.730640:1-418 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 237 of 418 bases (56.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8006_length_418_cov_1.730640:1-418 [pilon] Processing NODE_6857_length_480_cov_15.367688:1-480 [pilon] NODE_3147_length_842_cov_26.424411:1-842 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 678, Coverage: 80, minDepth: 20 [pilon] Confirmed 762 of 842 bases (90.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3147_length_842_cov_26.424411:1-842 [pilon] Processing NODE_1053_length_1465_cov_33.021577:1-1465 [pilon] NODE_3262_length_821_cov_21.287143:1-821 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 396, Coverage: 42, minDepth: 11 [pilon] Confirmed 655 of 821 bases (79.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3262_length_821_cov_21.287143:1-821 [pilon] Processing NODE_12738_length_243_cov_25.721311:1-243 [pilon] NODE_12012_length_246_cov_14.760000:1-246 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12012_length_246_cov_14.760000:1-246 [pilon] Processing NODE_14302_length_243_cov_11.819672:1-243 [pilon] NODE_13416_length_243_cov_19.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13416_length_243_cov_19.139344:1-243 [pilon] Processing NODE_14174_length_243_cov_12.868852:1-243 [pilon] NODE_5608_length_570_cov_4.360802:1-570 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 66, Coverage: 8, minDepth: 5 [pilon] Confirmed 408 of 570 bases (71.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5608_length_570_cov_4.360802:1-570 [pilon] Processing NODE_11195_length_276_cov_14.309677:1-276 [pilon] NODE_9877_length_330_cov_30.162679:1-330 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 140, Coverage: 26, minDepth: 7 [pilon] Confirmed 292 of 330 bases (88.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9877_length_330_cov_30.162679:1-330 [pilon] Processing NODE_4734_length_640_cov_69.685934:1-640 [pilon] NODE_9278_length_354_cov_27.407725:1-354 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 208, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 354 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9278_length_354_cov_27.407725:1-354 [pilon] Processing NODE_9536_length_345_cov_10.758929:1-345 [pilon] NODE_8175_length_410_cov_0.653979:1-410 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 7, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 410 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8175_length_410_cov_0.653979:1-410 [pilon] Processing NODE_11229_length_274_cov_18.006536:1-274 [pilon] NODE_11942_length_248_cov_7.433071:1-248 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 20, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 248 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11942_length_248_cov_7.433071:1-248 [pilon] Processing NODE_14376_length_243_cov_11.245902:1-243 [pilon] NODE_11308_length_271_cov_14.273333:1-271 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 43, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 271 bases (47.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11308_length_271_cov_14.273333:1-271 [pilon] Processing NODE_7808_length_427_cov_0.905229:1-427 [pilon] NODE_6989_length_472_cov_8.341880:1-472 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 95, Coverage: 3, minDepth: 5 [pilon] Confirmed 174 of 472 bases (36.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6989_length_472_cov_8.341880:1-472 [pilon] Processing NODE_10749_length_295_cov_22.741379:1-295 [pilon] NODE_3354_length_805_cov_2.824561:1-805 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 45, Coverage: 7, minDepth: 5 [pilon] Confirmed 457 of 805 bases (56.77%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3354_length_805_cov_2.824561:1-805 [pilon] Processing NODE_8381_length_401_cov_20.503571:1-401 [pilon] NODE_11584_length_261_cov_14.878571:1-261 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 206 of 261 bases (78.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11584_length_261_cov_14.878571:1-261 [pilon] Processing NODE_4946_length_623_cov_0.816733:1-623 [pilon] NODE_116_length_2905_cov_16.899066:1-2905 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 1147, Coverage: 47, minDepth: 12 [pilon] Confirmed 2298 of 2905 bases (79.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_116_length_2905_cov_16.899066:1-2905 [pilon] Processing NODE_8584_length_389_cov_25.347015:1-389 [pilon] NODE_11661_length_258_cov_12.080292:1-258 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 32, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11661_length_258_cov_12.080292:1-258 [pilon] Processing NODE_10595_length_301_cov_16.405556:1-301 [pilon] NODE_10993_length_285_cov_7.451220:1-285 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 22, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10993_length_285_cov_7.451220:1-285 [pilon] Processing NODE_6115_length_531_cov_11.800000:1-531 [pilon] NODE_7167_length_461_cov_41.555882:1-461 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 319, Coverage: 66, minDepth: 17 [pilon] Confirmed 380 of 461 bases (82.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7167_length_461_cov_41.555882:1-461 [pilon] Processing NODE_4644_length_648_cov_19.227704:1-648 [pilon] NODE_15178_length_171_cov_8.780000:1-171 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 171 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15178_length_171_cov_8.780000:1-171 [pilon] Processing NODE_14067_length_243_cov_13.704918:1-243 [pilon] NODE_10673_length_299_cov_16.095506:1-299 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 176 of 299 bases (58.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10673_length_299_cov_16.095506:1-299 [pilon] Processing NODE_6412_length_510_cov_1.791774:1-510 [pilon] NODE_819_length_1614_cov_3.643001:1-1614 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 147, Coverage: 12, minDepth: 5 [pilon] Confirmed 1354 of 1614 bases (83.89%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_819_length_1614_cov_3.643001:1-1614 [pilon] Processing NODE_14301_length_243_cov_11.827869:1-243 [pilon] NODE_6857_length_480_cov_15.367688:1-480 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 117, Coverage: 18, minDepth: 5 [pilon] Confirmed 347 of 480 bases (72.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6857_length_480_cov_15.367688:1-480 [pilon] Processing NODE_12749_length_243_cov_25.581967:1-243 [pilon] NODE_464_length_1954_cov_25.711402:1-1954 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 1137, Coverage: 48, minDepth: 12 [pilon] Confirmed 1708 of 1954 bases (87.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_464_length_1954_cov_25.711402:1-1954 [pilon] Processing NODE_10735_length_297_cov_5.517045:1-297 [pilon] NODE_2846_length_903_cov_2.446292:1-903 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 54, Coverage: 8, minDepth: 5 [pilon] Confirmed 552 of 903 bases (61.13%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2846_length_903_cov_2.446292:1-903 [pilon] Processing NODE_5959_length_544_cov_5.394799:1-544 [pilon] NODE_884_length_1570_cov_9.394755:1-1570 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 343, Coverage: 22, minDepth: 6 [pilon] Confirmed 1016 of 1570 bases (64.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_884_length_1570_cov_9.394755:1-1570 [pilon] Processing NODE_5426_length_582_cov_19.323210:1-582 [pilon] NODE_14302_length_243_cov_11.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14302_length_243_cov_11.819672:1-243 [pilon] Processing NODE_14524_length_243_cov_10.098361:1-243 [pilon] NODE_1053_length_1465_cov_33.021577:1-1465 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 1070, Coverage: 74, minDepth: 19 [pilon] Confirmed 1220 of 1465 bases (83.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1053_length_1465_cov_33.021577:1-1465 [pilon] Processing NODE_6756_length_486_cov_9.868493:1-486 [pilon] NODE_2395_length_991_cov_14.139080:1-991 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 241, Coverage: 15, minDepth: 5 [pilon] Confirmed 691 of 991 bases (69.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2395_length_991_cov_14.139080:1-991 [pilon] Processing NODE_10835_length_291_cov_13.470588:1-291 [pilon] NODE_3371_length_802_cov_4.538913:1-802 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 74, Coverage: 12, minDepth: 5 [pilon] Confirmed 635 of 802 bases (79.18%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3371_length_802_cov_4.538913:1-802 [pilon] Processing NODE_7932_length_421_cov_22.360000:1-421 [pilon] NODE_9536_length_345_cov_10.758929:1-345 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 52, Coverage: 4, minDepth: 5 [pilon] Confirmed 153 of 345 bases (44.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9536_length_345_cov_10.758929:1-345 [pilon] Processing NODE_4928_length_624_cov_4.019881:1-624 [pilon] NODE_518_length_1901_cov_29.393258:1-1901 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 1342, Coverage: 47, minDepth: 12 [pilon] Confirmed 1699 of 1901 bases (89.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_518_length_1901_cov_29.393258:1-1901 [pilon] Processing NODE_12746_length_243_cov_25.614754:1-243 [pilon] NODE_12738_length_243_cov_25.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12738_length_243_cov_25.721311:1-243 [pilon] Processing NODE_2103_length_1058_cov_1.731057:1-1058 [pilon] NODE_14174_length_243_cov_12.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14174_length_243_cov_12.868852:1-243 [pilon] Processing NODE_14782_length_243_cov_7.901639:1-243 [pilon] NODE_11195_length_276_cov_14.309677:1-276 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 44, Coverage: 2, minDepth: 5 [pilon] Confirmed 58 of 276 bases (21.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11195_length_276_cov_14.309677:1-276 [pilon] Processing NODE_14821_length_243_cov_7.483607:1-243 [pilon] NODE_4734_length_640_cov_69.685934:1-640 log: [pilon] frags shovill.bam: coverage 122 [pilon] Total Reads: 793, Coverage: 122, minDepth: 31 [pilon] Confirmed 545 of 640 bases (85.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4734_length_640_cov_69.685934:1-640 [pilon] Processing NODE_12092_length_244_cov_13.097561:1-244 [pilon] NODE_14376_length_243_cov_11.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14376_length_243_cov_11.245902:1-243 [pilon] Processing NODE_12686_length_243_cov_26.393443:1-243 [pilon] NODE_7808_length_427_cov_0.905229:1-427 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 174 of 427 bases (40.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7808_length_427_cov_0.905229:1-427 [pilon] Processing NODE_5256_length_596_cov_15.709474:1-596 [pilon] NODE_11229_length_274_cov_18.006536:1-274 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 61, Coverage: 11, minDepth: 5 [pilon] Confirmed 196 of 274 bases (71.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11229_length_274_cov_18.006536:1-274 [pilon] Processing NODE_5391_length_585_cov_2.088362:1-585 [pilon] NODE_8381_length_401_cov_20.503571:1-401 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 127, Coverage: 20, minDepth: 5 [pilon] Confirmed 310 of 401 bases (77.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8381_length_401_cov_20.503571:1-401 [pilon] Processing NODE_4044_length_711_cov_1.933898:1-711 [pilon] NODE_8584_length_389_cov_25.347015:1-389 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 153, Coverage: 16, minDepth: 5 [pilon] Confirmed 263 of 389 bases (67.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8584_length_389_cov_25.347015:1-389 [pilon] Processing NODE_9143_length_360_cov_13.606695:1-360 [pilon] NODE_4946_length_623_cov_0.816733:1-623 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 220 of 623 bases (35.31%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4946_length_623_cov_0.816733:1-623 [pilon] Processing NODE_8346_length_402_cov_40.174377:1-402 [pilon] NODE_10595_length_301_cov_16.405556:1-301 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 71, Coverage: 6, minDepth: 5 [pilon] Confirmed 168 of 301 bases (55.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10595_length_301_cov_16.405556:1-301 [pilon] Processing NODE_4430_length_668_cov_19.100548:1-668 [pilon] NODE_14067_length_243_cov_13.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14067_length_243_cov_13.704918:1-243 [pilon] Processing NODE_13177_length_243_cov_21.303279:1-243 [pilon] NODE_6115_length_531_cov_11.800000:1-531 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 117, Coverage: 16, minDepth: 5 [pilon] Confirmed 346 of 531 bases (65.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6115_length_531_cov_11.800000:1-531 [pilon] Processing NODE_3230_length_829_cov_3.008475:1-829 [pilon] NODE_14301_length_243_cov_11.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14301_length_243_cov_11.827869:1-243 [pilon] Processing NODE_2447_length_978_cov_18.485414:1-978 [pilon] NODE_4644_length_648_cov_19.227704:1-648 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 282, Coverage: 30, minDepth: 8 [pilon] Confirmed 545 of 648 bases (84.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4644_length_648_cov_19.227704:1-648 [pilon] Processing NODE_14186_length_243_cov_12.721311:1-243 [pilon] NODE_10749_length_295_cov_22.741379:1-295 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 84, Coverage: 7, minDepth: 5 [pilon] Confirmed 168 of 295 bases (56.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10749_length_295_cov_22.741379:1-295 [pilon] Processing NODE_6130_length_529_cov_37.286765:1-529 [pilon] NODE_5426_length_582_cov_19.323210:1-582 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 303, Coverage: 50, minDepth: 13 [pilon] Confirmed 500 of 582 bases (85.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5426_length_582_cov_19.323210:1-582 [pilon] Processing NODE_9742_length_336_cov_21.381395:1-336 [pilon] NODE_6412_length_510_cov_1.791774:1-510 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 264 of 510 bases (51.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6412_length_510_cov_1.791774:1-510 [pilon] Processing NODE_10534_length_303_cov_21.884615:1-303 [pilon] NODE_10735_length_297_cov_5.517045:1-297 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 27, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10735_length_297_cov_5.517045:1-297 [pilon] Processing NODE_738_length_1673_cov_17.554768:1-1673 [pilon] NODE_12749_length_243_cov_25.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12749_length_243_cov_25.581967:1-243 [pilon] Processing NODE_6773_length_485_cov_1.854396:1-485 [pilon] NODE_14524_length_243_cov_10.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14524_length_243_cov_10.098361:1-243 [pilon] Processing NODE_6991_length_472_cov_0.632479:1-472 [pilon] NODE_12746_length_243_cov_25.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12746_length_243_cov_25.614754:1-243 [pilon] Processing NODE_11076_length_280_cov_17.251572:1-280 [pilon] NODE_10835_length_291_cov_13.470588:1-291 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 55, Coverage: 2, minDepth: 5 [pilon] Confirmed 98 of 291 bases (33.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10835_length_291_cov_13.470588:1-291 [pilon] Processing NODE_1399_length_1297_cov_27.477891:1-1297 [pilon] NODE_4928_length_624_cov_4.019881:1-624 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 49, Coverage: 9, minDepth: 5 [pilon] Confirmed 531 of 624 bases (85.10%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4928_length_624_cov_4.019881:1-624 [pilon] Processing NODE_8473_length_395_cov_30.919708:1-395 [pilon] NODE_5959_length_544_cov_5.394799:1-544 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 74, Coverage: 13, minDepth: 5 [pilon] Confirmed 520 of 544 bases (95.59%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5959_length_544_cov_5.394799:1-544 [pilon] Processing NODE_11344_length_270_cov_16.275168:1-270 [pilon] NODE_7932_length_421_cov_22.360000:1-421 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 139, Coverage: 13, minDepth: 5 [pilon] Confirmed 253 of 421 bases (60.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7932_length_421_cov_22.360000:1-421 [pilon] Processing NODE_1836_length_1133_cov_17.398221:1-1133 [pilon] NODE_2103_length_1058_cov_1.731057:1-1058 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 59, Coverage: 7, minDepth: 5 [pilon] Confirmed 839 of 1058 bases (79.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2103_length_1058_cov_1.731057:1-1058 [pilon] Processing NODE_14661_length_243_cov_8.942623:1-243 [pilon] NODE_6756_length_486_cov_9.868493:1-486 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 87, Coverage: 15, minDepth: 5 [pilon] Confirmed 407 of 486 bases (83.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6756_length_486_cov_9.868493:1-486 [pilon] Processing NODE_2853_length_901_cov_17.053846:1-901 [pilon] NODE_14782_length_243_cov_7.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14782_length_243_cov_7.901639:1-243 [pilon] Processing NODE_8281_length_405_cov_16.802817:1-405 [pilon] NODE_14821_length_243_cov_7.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14821_length_243_cov_7.483607:1-243 [pilon] Processing NODE_14616_length_243_cov_9.286885:1-243 [pilon] NODE_12092_length_244_cov_13.097561:1-244 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 30, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12092_length_244_cov_13.097561:1-244 [pilon] Processing NODE_2758_length_917_cov_10.150754:1-917 [pilon] NODE_13177_length_243_cov_21.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13177_length_243_cov_21.303279:1-243 [pilon] Processing NODE_8319_length_403_cov_43.400709:1-403 [pilon] NODE_12686_length_243_cov_26.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12686_length_243_cov_26.393443:1-243 [pilon] Processing NODE_5787_length_556_cov_37.250575:1-556 [pilon] NODE_5256_length_596_cov_15.709474:1-596 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 172, Coverage: 21, minDepth: 5 [pilon] Confirmed 449 of 596 bases (75.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5256_length_596_cov_15.709474:1-596 [pilon] Processing NODE_8695_length_382_cov_34.812261:1-382 [pilon] NODE_5391_length_585_cov_2.088362:1-585 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 47, Coverage: 9, minDepth: 5 [pilon] Confirmed 348 of 585 bases (59.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5391_length_585_cov_2.088362:1-585 [pilon] Processing NODE_11512_length_263_cov_23.852113:1-263 [pilon] NODE_4044_length_711_cov_1.933898:1-711 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 517 of 711 bases (72.71%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4044_length_711_cov_1.933898:1-711 [pilon] Processing NODE_2851_length_902_cov_1.353393:1-902 [pilon] NODE_9143_length_360_cov_13.606695:1-360 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 75, Coverage: 6, minDepth: 5 [pilon] Confirmed 201 of 360 bases (55.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9143_length_360_cov_13.606695:1-360 [pilon] Processing NODE_9566_length_343_cov_11.963964:1-343 [pilon] NODE_738_length_1673_cov_17.554768:1-1673 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 620, Coverage: 39, minDepth: 10 [pilon] Confirmed 1071 of 1673 bases (64.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_738_length_1673_cov_17.554768:1-1673 [pilon] Processing NODE_5860_length_551_cov_1.272093:1-551 [pilon] NODE_8346_length_402_cov_40.174377:1-402 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 251, Coverage: 44, minDepth: 11 [pilon] Confirmed 357 of 402 bases (88.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8346_length_402_cov_40.174377:1-402 [pilon] Processing NODE_6155_length_528_cov_2.452088:1-528 [pilon] NODE_4430_length_668_cov_19.100548:1-668 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 237, Coverage: 35, minDepth: 9 [pilon] Confirmed 482 of 668 bases (72.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4430_length_668_cov_19.100548:1-668 [pilon] Processing NODE_11028_length_282_cov_19.633540:1-282 [pilon] NODE_6991_length_472_cov_0.632479:1-472 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 11, Coverage: 2, minDepth: 5 [pilon] Confirmed 38 of 472 bases (8.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6991_length_472_cov_0.632479:1-472 [pilon] Processing NODE_13273_length_243_cov_20.401639:1-243 [pilon] NODE_14186_length_243_cov_12.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14186_length_243_cov_12.721311:1-243 [pilon] Processing NODE_10453_length_306_cov_17.216216:1-306 [pilon] NODE_1399_length_1297_cov_27.477891:1-1297 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 852, Coverage: 48, minDepth: 12 [pilon] Confirmed 1095 of 1297 bases (84.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1399_length_1297_cov_27.477891:1-1297 [pilon] Processing NODE_9493_length_345_cov_39.491071:1-345 [pilon] NODE_6130_length_529_cov_37.286765:1-529 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 370, Coverage: 35, minDepth: 9 [pilon] Confirmed 339 of 529 bases (64.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6130_length_529_cov_37.286765:1-529 [pilon] Processing NODE_2679_length_932_cov_23.286067:1-932 [pilon] NODE_3230_length_829_cov_3.008475:1-829 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 60, Coverage: 9, minDepth: 5 [pilon] Confirmed 650 of 829 bases (78.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3230_length_829_cov_3.008475:1-829 [pilon] Processing NODE_12206_length_243_cov_36.475410:1-243 [pilon] NODE_9742_length_336_cov_21.381395:1-336 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 106, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 336 bases (38.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9742_length_336_cov_21.381395:1-336 [pilon] Processing NODE_10283_length_314_cov_21.497409:1-314 [pilon] NODE_2447_length_978_cov_18.485414:1-978 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 451, Coverage: 34, minDepth: 9 [pilon] Confirmed 734 of 978 bases (75.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2447_length_978_cov_18.485414:1-978 [pilon] Processing NODE_4857_length_630_cov_11.787819:1-630 [pilon] NODE_14661_length_243_cov_8.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14661_length_243_cov_8.942623:1-243 [pilon] Processing NODE_3774_length_744_cov_3.221509:1-744 [pilon] NODE_10534_length_303_cov_21.884615:1-303 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 70, Coverage: 5, minDepth: 5 [pilon] Confirmed 136 of 303 bases (44.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10534_length_303_cov_21.884615:1-303 [pilon] Processing NODE_4253_length_687_cov_23.123675:1-687 [pilon] NODE_8473_length_395_cov_30.919708:1-395 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 200, Coverage: 32, minDepth: 8 [pilon] Confirmed 359 of 395 bases (90.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8473_length_395_cov_30.919708:1-395 [pilon] Processing NODE_1633_length_1205_cov_6.863469:1-1205 [pilon] NODE_11076_length_280_cov_17.251572:1-280 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 50, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 280 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11076_length_280_cov_17.251572:1-280 [pilon] Processing NODE_3976_length_717_cov_14.557047:1-717 [pilon] NODE_1836_length_1133_cov_17.398221:1-1133 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 389, Coverage: 38, minDepth: 10 [pilon] Confirmed 954 of 1133 bases (84.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1836_length_1133_cov_17.398221:1-1133 [pilon] Processing NODE_11012_length_284_cov_2.889571:1-284 [pilon] NODE_11344_length_270_cov_16.275168:1-270 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 49, Coverage: 8, minDepth: 5 [pilon] Confirmed 190 of 270 bases (70.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11344_length_270_cov_16.275168:1-270 [pilon] Processing NODE_4772_length_637_cov_20.901163:1-637 [pilon] NODE_14616_length_243_cov_9.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14616_length_243_cov_9.286885:1-243 [pilon] Processing NODE_4913_length_625_cov_2.345238:1-625 [pilon] NODE_2853_length_901_cov_17.053846:1-901 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 322, Coverage: 34, minDepth: 9 [pilon] Confirmed 692 of 901 bases (76.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2853_length_901_cov_17.053846:1-901 [pilon] Processing NODE_7345_length_451_cov_1.327273:1-451 [pilon] NODE_2758_length_917_cov_10.150754:1-917 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 208, Coverage: 20, minDepth: 5 [pilon] Confirmed 769 of 917 bases (83.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2758_length_917_cov_10.150754:1-917 [pilon] Processing NODE_10638_length_300_cov_14.541899:1-300 [pilon] NODE_8281_length_405_cov_16.802817:1-405 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 98, Coverage: 19, minDepth: 5 [pilon] Confirmed 290 of 405 bases (71.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8281_length_405_cov_16.802817:1-405 [pilon] Processing NODE_13743_length_243_cov_16.106557:1-243 [pilon] NODE_2851_length_902_cov_1.353393:1-902 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 33, Coverage: 5, minDepth: 5 [pilon] Confirmed 344 of 902 bases (38.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2851_length_902_cov_1.353393:1-902 [pilon] Processing NODE_3653_length_761_cov_31.326563:1-761 [pilon] NODE_6773_length_485_cov_1.854396:1-485 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 171 of 485 bases (35.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6773_length_485_cov_1.854396:1-485 [pilon] Processing NODE_10932_length_287_cov_19.072289:1-287 [pilon] NODE_13273_length_243_cov_20.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13273_length_243_cov_20.401639:1-243 [pilon] Processing NODE_11054_length_281_cov_33.981250:1-281 [pilon] NODE_9493_length_345_cov_39.491071:1-345 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 210, Coverage: 42, minDepth: 11 [pilon] Confirmed 313 of 345 bases (90.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9493_length_345_cov_39.491071:1-345 [pilon] Processing NODE_9395_length_350_cov_68.803493:1-350 [pilon] NODE_11512_length_263_cov_23.852113:1-263 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 69, Coverage: 6, minDepth: 5 [pilon] Confirmed 160 of 263 bases (60.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11512_length_263_cov_23.852113:1-263 [pilon] Processing NODE_14024_length_243_cov_14.024590:1-243 [pilon] NODE_5787_length_556_cov_37.250575:1-556 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 398, Coverage: 40, minDepth: 10 [pilon] Confirmed 374 of 556 bases (67.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5787_length_556_cov_37.250575:1-556 [pilon] Processing NODE_12300_length_243_cov_33.147541:1-243 [pilon] NODE_9566_length_343_cov_11.963964:1-343 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 66, Coverage: 8, minDepth: 5 [pilon] Confirmed 224 of 343 bases (65.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9566_length_343_cov_11.963964:1-343 [pilon] Processing NODE_7481_length_444_cov_14.037152:1-444 [pilon] NODE_5860_length_551_cov_1.272093:1-551 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 277 of 551 bases (50.27%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5860_length_551_cov_1.272093:1-551 [pilon] NODE_8695_length_382_cov_34.812261:1-382 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 210, Coverage: 33, minDepth: 8 [pilon] Confirmed 321 of 382 bases (84.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_1643_length_1202_cov_2.876966:1-1202 [pilon] Finished processing NODE_8695_length_382_cov_34.812261:1-382 [pilon] Processing NODE_5110_length_609_cov_17.688525:1-609 [pilon] NODE_6155_length_528_cov_2.452088:1-528 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 28, Coverage: 7, minDepth: 5 [pilon] Confirmed 312 of 528 bases (59.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6155_length_528_cov_2.452088:1-528 [pilon] Processing NODE_9701_length_338_cov_27.064516:1-338 [pilon] NODE_8319_length_403_cov_43.400709:1-403 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 304, Coverage: 50, minDepth: 13 [pilon] Confirmed 342 of 403 bases (84.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8319_length_403_cov_43.400709:1-403 [pilon] Processing NODE_5483_length_579_cov_1.227074:1-579 [pilon] NODE_10453_length_306_cov_17.216216:1-306 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 68, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10453_length_306_cov_17.216216:1-306 [pilon] Processing NODE_231_length_2407_cov_21.346457:1-2407 [pilon] NODE_11028_length_282_cov_19.633540:1-282 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 228 of 282 bases (80.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11028_length_282_cov_19.633540:1-282 [pilon] Processing NODE_6629_length_495_cov_16.802139:1-495 [pilon] NODE_7345_length_451_cov_1.327273:1-451 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 227 of 451 bases (50.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7345_length_451_cov_1.327273:1-451 [pilon] Processing NODE_2073_length_1067_cov_2.205074:1-1067 [pilon] NODE_10283_length_314_cov_21.497409:1-314 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 103, Coverage: 7, minDepth: 5 [pilon] Confirmed 164 of 314 bases (52.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10283_length_314_cov_21.497409:1-314 [pilon] Processing NODE_14756_length_243_cov_8.057377:1-243 [pilon] NODE_1633_length_1205_cov_6.863469:1-1205 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 189, Coverage: 13, minDepth: 5 [pilon] Confirmed 876 of 1205 bases (72.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1633_length_1205_cov_6.863469:1-1205 [pilon] Processing NODE_14757_length_243_cov_8.057377:1-243 [pilon] NODE_12206_length_243_cov_36.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12206_length_243_cov_36.475410:1-243 [pilon] Processing NODE_1036_length_1475_cov_15.328656:1-1475 [pilon] NODE_4857_length_630_cov_11.787819:1-630 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 139, Coverage: 24, minDepth: 6 [pilon] Confirmed 553 of 630 bases (87.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4857_length_630_cov_11.787819:1-630 [pilon] Processing NODE_14493_length_243_cov_10.327869:1-243 [pilon] NODE_2679_length_932_cov_23.286067:1-932 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 453, Coverage: 45, minDepth: 11 [pilon] Confirmed 830 of 932 bases (89.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2679_length_932_cov_23.286067:1-932 [pilon] Processing NODE_1969_length_1094_cov_16.924974:1-1094 [pilon] NODE_3774_length_744_cov_3.221509:1-744 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 63, Coverage: 11, minDepth: 5 [pilon] Confirmed 473 of 744 bases (63.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3774_length_744_cov_3.221509:1-744 [pilon] Processing NODE_12351_length_243_cov_32.040984:1-243 [pilon] NODE_4253_length_687_cov_23.123675:1-687 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 288, Coverage: 42, minDepth: 11 [pilon] Confirmed 536 of 687 bases (78.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4253_length_687_cov_23.123675:1-687 [pilon] Processing NODE_3582_length_771_cov_20.361538:1-771 [pilon] NODE_10638_length_300_cov_14.541899:1-300 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 63, Coverage: 3, minDepth: 5 [pilon] Confirmed 103 of 300 bases (34.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10638_length_300_cov_14.541899:1-300 [pilon] Processing NODE_9787_length_335_cov_13.696262:1-335 [pilon] NODE_11012_length_284_cov_2.889571:1-284 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 284 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11012_length_284_cov_2.889571:1-284 [pilon] Processing NODE_1103_length_1439_cov_23.557663:1-1439 [pilon] NODE_3976_length_717_cov_14.557047:1-717 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 199, Coverage: 25, minDepth: 6 [pilon] Confirmed 468 of 717 bases (65.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3976_length_717_cov_14.557047:1-717 [pilon] Processing NODE_5748_length_560_cov_0.904328:1-560 [pilon] NODE_3653_length_761_cov_31.326563:1-761 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 545, Coverage: 37, minDepth: 9 [pilon] Confirmed 499 of 761 bases (65.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3653_length_761_cov_31.326563:1-761 [pilon] Processing NODE_12572_length_243_cov_27.950820:1-243 [pilon] NODE_4913_length_625_cov_2.345238:1-625 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 40, Coverage: 7, minDepth: 5 [pilon] Confirmed 360 of 625 bases (57.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4913_length_625_cov_2.345238:1-625 [pilon] Processing NODE_4921_length_624_cov_24.918489:1-624 [pilon] NODE_4772_length_637_cov_20.901163:1-637 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 250, Coverage: 40, minDepth: 10 [pilon] Confirmed 449 of 637 bases (70.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4772_length_637_cov_20.901163:1-637 [pilon] Processing NODE_6500_length_504_cov_2.026110:1-504 [pilon] NODE_11054_length_281_cov_33.981250:1-281 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 115, Coverage: 17, minDepth: 5 [pilon] Confirmed 249 of 281 bases (88.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11054_length_281_cov_33.981250:1-281 [pilon] Processing NODE_12250_length_243_cov_34.622951:1-243 [pilon] NODE_9395_length_350_cov_68.803493:1-350 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 345, Coverage: 63, minDepth: 16 [pilon] Confirmed 299 of 350 bases (85.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9395_length_350_cov_68.803493:1-350 [pilon] Processing NODE_3718_length_752_cov_24.553090:1-752 [pilon] NODE_13743_length_243_cov_16.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13743_length_243_cov_16.106557:1-243 [pilon] Processing NODE_6537_length_501_cov_15.336842:1-501 [pilon] NODE_10932_length_287_cov_19.072289:1-287 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 68, Coverage: 5, minDepth: 5 [pilon] Confirmed 147 of 287 bases (51.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10932_length_287_cov_19.072289:1-287 [pilon] Processing NODE_7818_length_426_cov_19.757377:1-426 [pilon] NODE_2073_length_1067_cov_2.205074:1-1067 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 62, Coverage: 7, minDepth: 5 [pilon] Confirmed 591 of 1067 bases (55.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2073_length_1067_cov_2.205074:1-1067 [pilon] Processing NODE_9539_length_345_cov_9.486607:1-345 [pilon] NODE_12300_length_243_cov_33.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12300_length_243_cov_33.147541:1-243 [pilon] Processing NODE_6367_length_513_cov_0.752551:1-513 [pilon] NODE_14024_length_243_cov_14.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14024_length_243_cov_14.024590:1-243 [pilon] Processing NODE_556_length_1851_cov_21.448555:1-1851 [pilon] NODE_9787_length_335_cov_13.696262:1-335 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 76, Coverage: 9, minDepth: 5 [pilon] Confirmed 208 of 335 bases (62.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9787_length_335_cov_13.696262:1-335 [pilon] Processing NODE_6620_length_496_cov_1.194667:1-496 [pilon] NODE_7481_length_444_cov_14.037152:1-444 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 111, Coverage: 5, minDepth: 5 [pilon] Confirmed 186 of 444 bases (41.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7481_length_444_cov_14.037152:1-444 [pilon] Processing NODE_6546_length_500_cov_54.187335:1-500 [pilon] NODE_9701_length_338_cov_27.064516:1-338 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 128, Coverage: 5, minDepth: 5 [pilon] Confirmed 139 of 338 bases (41.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9701_length_338_cov_27.064516:1-338 [pilon] Processing NODE_12412_length_243_cov_30.704918:1-243 [pilon] NODE_1643_length_1202_cov_2.876966:1-1202 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 78, Coverage: 8, minDepth: 5 [pilon] Confirmed 789 of 1202 bases (65.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1643_length_1202_cov_2.876966:1-1202 [pilon] Processing NODE_15167_length_179_cov_2.965517:1-179 [pilon] NODE_5110_length_609_cov_17.688525:1-609 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 251, Coverage: 20, minDepth: 5 [pilon] Confirmed 452 of 609 bases (74.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5110_length_609_cov_17.688525:1-609 [pilon] Processing NODE_1849_length_1129_cov_24.522817:1-1129 [pilon] NODE_12572_length_243_cov_27.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12572_length_243_cov_27.950820:1-243 [pilon] Processing NODE_11324_length_270_cov_24.550336:1-270 [pilon] NODE_6629_length_495_cov_16.802139:1-495 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 136, Coverage: 10, minDepth: 5 [pilon] Confirmed 224 of 495 bases (45.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6629_length_495_cov_16.802139:1-495 [pilon] Processing NODE_7285_length_455_cov_18.032934:1-455 [pilon] NODE_14757_length_243_cov_8.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14757_length_243_cov_8.057377:1-243 [pilon] Processing NODE_1922_length_1106_cov_29.632487:1-1106 [pilon] NODE_12250_length_243_cov_34.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12250_length_243_cov_34.622951:1-243 [pilon] Processing NODE_5813_length_554_cov_24.120092:1-554 [pilon] NODE_14756_length_243_cov_8.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14756_length_243_cov_8.057377:1-243 [pilon] Processing NODE_11025_length_282_cov_22.012422:1-282 [pilon] NODE_12351_length_243_cov_32.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12351_length_243_cov_32.040984:1-243 [pilon] NODE_5483_length_579_cov_1.227074:1-579 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 237 of 579 bases (40.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5483_length_579_cov_1.227074:1-579 [pilon] Processing NODE_9404_length_350_cov_17.807860:1-350 [pilon] Processing NODE_13646_length_243_cov_17.098361:1-243 [pilon] NODE_3718_length_752_cov_24.553090:1-752 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 365, Coverage: 39, minDepth: 10 [pilon] Confirmed 568 of 752 bases (75.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3718_length_752_cov_24.553090:1-752 [pilon] Processing NODE_4728_length_641_cov_11.692308:1-641 [pilon] NODE_1969_length_1094_cov_16.924974:1-1094 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 400, Coverage: 41, minDepth: 10 [pilon] Confirmed 858 of 1094 bases (78.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1969_length_1094_cov_16.924974:1-1094 [pilon] Processing NODE_586_length_1824_cov_1.574868:1-1824 [pilon] NODE_14493_length_243_cov_10.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14493_length_243_cov_10.327869:1-243 [pilon] Processing NODE_9883_length_330_cov_26.923445:1-330 [pilon] NODE_1036_length_1475_cov_15.328656:1-1475 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 559, Coverage: 17, minDepth: 5 [pilon] Confirmed 1230 of 1475 bases (83.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1036_length_1475_cov_15.328656:1-1475 [pilon] Processing NODE_955_length_1524_cov_21.408411:1-1524 [pilon] NODE_231_length_2407_cov_21.346457:1-2407 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 1225, Coverage: 58, minDepth: 15 [pilon] Confirmed 2262 of 2407 bases (93.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_231_length_2407_cov_21.346457:1-2407 [pilon] Processing NODE_4615_length_651_cov_27.198113:1-651 [pilon] NODE_3582_length_771_cov_20.361538:1-771 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 330, Coverage: 31, minDepth: 8 [pilon] Confirmed 510 of 771 bases (66.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3582_length_771_cov_20.361538:1-771 [pilon] Processing NODE_4710_length_642_cov_27.303263:1-642 [pilon] NODE_1103_length_1439_cov_23.557663:1-1439 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 756, Coverage: 50, minDepth: 13 [pilon] Confirmed 1000 of 1439 bases (69.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1103_length_1439_cov_23.557663:1-1439 [pilon] Processing NODE_11905_length_249_cov_17.351562:1-249 [pilon] NODE_5748_length_560_cov_0.904328:1-560 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 278 of 560 bases (49.64%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5748_length_560_cov_0.904328:1-560 [pilon] Processing NODE_6455_length_507_cov_0.875648:1-507 [pilon] NODE_6500_length_504_cov_2.026110:1-504 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 293 of 504 bases (58.13%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6500_length_504_cov_2.026110:1-504 [pilon] Processing NODE_6902_length_477_cov_22.466292:1-477 [pilon] NODE_4921_length_624_cov_24.918489:1-624 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 345, Coverage: 37, minDepth: 9 [pilon] Confirmed 521 of 624 bases (83.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4921_length_624_cov_24.918489:1-624 [pilon] Processing NODE_4754_length_639_cov_8.673745:1-639 [pilon] NODE_9539_length_345_cov_9.486607:1-345 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 54, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 345 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9539_length_345_cov_9.486607:1-345 [pilon] Processing NODE_8012_length_417_cov_37.932432:1-417 [pilon] NODE_6537_length_501_cov_15.336842:1-501 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 135, Coverage: 22, minDepth: 6 [pilon] Confirmed 344 of 501 bases (68.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6537_length_501_cov_15.336842:1-501 [pilon] Processing NODE_9534_length_345_cov_11.633929:1-345 [pilon] NODE_6620_length_496_cov_1.194667:1-496 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 271 of 496 bases (54.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6620_length_496_cov_1.194667:1-496 [pilon] Processing NODE_143_length_2771_cov_27.444906:1-2771 [pilon] NODE_7818_length_426_cov_19.757377:1-426 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 133, Coverage: 20, minDepth: 5 [pilon] Confirmed 328 of 426 bases (77.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7818_length_426_cov_19.757377:1-426 [pilon] Processing NODE_13523_length_243_cov_18.147541:1-243 [pilon] NODE_11324_length_270_cov_24.550336:1-270 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 84, Coverage: 10, minDepth: 5 [pilon] Confirmed 195 of 270 bases (72.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11324_length_270_cov_24.550336:1-270 [pilon] Processing NODE_7357_length_450_cov_17.957447:1-450 [pilon] NODE_6367_length_513_cov_0.752551:1-513 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 513 bases (25.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6367_length_513_cov_0.752551:1-513 [pilon] Processing NODE_802_length_1626_cov_2.181395:1-1626 [pilon] NODE_5813_length_554_cov_24.120092:1-554 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 338, Coverage: 50, minDepth: 13 [pilon] Confirmed 388 of 554 bases (70.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5813_length_554_cov_24.120092:1-554 [pilon] Processing NODE_1186_length_1403_cov_34.535101:1-1403 [pilon] NODE_4728_length_641_cov_11.692308:1-641 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 146, Coverage: 17, minDepth: 5 [pilon] Confirmed 614 of 641 bases (95.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4728_length_641_cov_11.692308:1-641 [pilon] Processing NODE_1768_length_1156_cov_2.339130:1-1156 [pilon] NODE_6546_length_500_cov_54.187335:1-500 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 453, Coverage: 74, minDepth: 19 [pilon] Confirmed 454 of 500 bases (90.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6546_length_500_cov_54.187335:1-500 [pilon] Processing NODE_14946_length_243_cov_6.147541:1-243 [pilon] NODE_12412_length_243_cov_30.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12412_length_243_cov_30.704918:1-243 [pilon] Processing NODE_8236_length_407_cov_4.940559:1-407 [pilon] NODE_556_length_1851_cov_21.448555:1-1851 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 907, Coverage: 54, minDepth: 14 [pilon] Confirmed 1676 of 1851 bases (90.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_556_length_1851_cov_21.448555:1-1851 [pilon] Processing NODE_15001_length_243_cov_5.385246:1-243 [pilon] NODE_15167_length_179_cov_2.965517:1-179 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 179 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15167_length_179_cov_2.965517:1-179 [pilon] Processing NODE_1057_length_1462_cov_17.407159:1-1462 [pilon] NODE_1849_length_1129_cov_24.522817:1-1129 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 601, Coverage: 56, minDepth: 14 [pilon] Confirmed 993 of 1129 bases (87.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1849_length_1129_cov_24.522817:1-1129 [pilon] Processing NODE_12079_length_244_cov_22.252033:1-244 [pilon] NODE_7285_length_455_cov_18.032934:1-455 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 255, Coverage: 42, minDepth: 11 [pilon] Confirmed 361 of 455 bases (79.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7285_length_455_cov_18.032934:1-455 [pilon] Processing NODE_1212_length_1385_cov_12.052215:1-1385 [pilon] NODE_1922_length_1106_cov_29.632487:1-1106 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 715, Coverage: 72, minDepth: 18 [pilon] Confirmed 797 of 1106 bases (72.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1922_length_1106_cov_29.632487:1-1106 [pilon] Processing NODE_8135_length_411_cov_23.289655:1-411 [pilon] NODE_8012_length_417_cov_37.932432:1-417 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 266, Coverage: 43, minDepth: 11 [pilon] Confirmed 314 of 417 bases (75.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8012_length_417_cov_37.932432:1-417 [pilon] Processing NODE_4391_length_672_cov_17.112523:1-672 [pilon] NODE_9404_length_350_cov_17.807860:1-350 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 76, Coverage: 7, minDepth: 5 [pilon] Confirmed 188 of 350 bases (53.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9404_length_350_cov_17.807860:1-350 [pilon] Processing NODE_8358_length_402_cov_19.035587:1-402 [pilon] NODE_11025_length_282_cov_22.012422:1-282 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 79, Coverage: 5, minDepth: 5 [pilon] Confirmed 153 of 282 bases (54.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11025_length_282_cov_22.012422:1-282 [pilon] Processing NODE_11919_length_249_cov_12.507812:1-249 [pilon] NODE_13646_length_243_cov_17.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13646_length_243_cov_17.098361:1-243 [pilon] Processing NODE_12497_length_243_cov_29.163934:1-243 [pilon] NODE_9883_length_330_cov_26.923445:1-330 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 109, Coverage: 13, minDepth: 5 [pilon] Confirmed 236 of 330 bases (71.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9883_length_330_cov_26.923445:1-330 [pilon] Processing NODE_5966_length_543_cov_32.798578:1-543 [pilon] NODE_586_length_1824_cov_1.574868:1-1824 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 85, Coverage: 6, minDepth: 5 [pilon] Confirmed 1114 of 1824 bases (61.07%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_586_length_1824_cov_1.574868:1-1824 [pilon] Processing NODE_14170_length_243_cov_12.909836:1-243 [pilon] NODE_4615_length_651_cov_27.198113:1-651 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 314, Coverage: 39, minDepth: 10 [pilon] Confirmed 594 of 651 bases (91.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4615_length_651_cov_27.198113:1-651 [pilon] Processing NODE_7771_length_429_cov_10.464286:1-429 [pilon] NODE_955_length_1524_cov_21.408411:1-1524 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 685, Coverage: 42, minDepth: 11 [pilon] Confirmed 1208 of 1524 bases (79.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_955_length_1524_cov_21.408411:1-1524 [pilon] Processing NODE_3090_length_855_cov_2.564033:1-855 [pilon] NODE_4710_length_642_cov_27.303263:1-642 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 330, Coverage: 36, minDepth: 9 [pilon] Confirmed 427 of 642 bases (66.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4710_length_642_cov_27.303263:1-642 [pilon] Processing NODE_13618_length_243_cov_17.327869:1-243 [pilon] NODE_6455_length_507_cov_0.875648:1-507 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 507 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6455_length_507_cov_0.875648:1-507 [pilon] Processing NODE_8668_length_384_cov_15.049430:1-384 [pilon] NODE_11905_length_249_cov_17.351562:1-249 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 46, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11905_length_249_cov_17.351562:1-249 [pilon] Processing NODE_5169_length_604_cov_4.165631:1-604 [pilon] NODE_6902_length_477_cov_22.466292:1-477 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 198, Coverage: 21, minDepth: 5 [pilon] Confirmed 303 of 477 bases (63.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6902_length_477_cov_22.466292:1-477 [pilon] Processing NODE_11482_length_264_cov_15.699301:1-264 [pilon] NODE_143_length_2771_cov_27.444906:1-2771 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 1617, Coverage: 50, minDepth: 13 [pilon] Confirmed 2378 of 2771 bases (85.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_143_length_2771_cov_27.444906:1-2771 [pilon] Processing NODE_1456_length_1279_cov_1.272021:1-1279 [pilon] NODE_4754_length_639_cov_8.673745:1-639 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 123, Coverage: 15, minDepth: 5 [pilon] Confirmed 516 of 639 bases (80.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4754_length_639_cov_8.673745:1-639 [pilon] Processing NODE_885_length_1570_cov_6.926846:1-1570 [pilon] NODE_7357_length_450_cov_17.957447:1-450 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 127, Coverage: 13, minDepth: 5 [pilon] Confirmed 296 of 450 bases (65.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7357_length_450_cov_17.957447:1-450 [pilon] Processing NODE_5780_length_557_cov_6.763761:1-557 [pilon] NODE_1768_length_1156_cov_2.339130:1-1156 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 69, Coverage: 7, minDepth: 5 [pilon] Confirmed 821 of 1156 bases (71.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1768_length_1156_cov_2.339130:1-1156 [pilon] Processing NODE_4017_length_714_cov_2.441821:1-714 [pilon] NODE_1186_length_1403_cov_34.535101:1-1403 log: [pilon] frags shovill.bam: coverage 87 [pilon] Total Reads: 1046, Coverage: 87, minDepth: 22 [pilon] Confirmed 1145 of 1403 bases (81.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1186_length_1403_cov_34.535101:1-1403 [pilon] Processing NODE_4947_length_623_cov_0.715139:1-623 [pilon] NODE_9534_length_345_cov_11.633929:1-345 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 64, Coverage: 10, minDepth: 5 [pilon] Confirmed 227 of 345 bases (65.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9534_length_345_cov_11.633929:1-345 [pilon] Processing NODE_3919_length_725_cov_23.612583:1-725 [pilon] NODE_13523_length_243_cov_18.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13523_length_243_cov_18.147541:1-243 [pilon] Processing NODE_7850_length_425_cov_4.796053:1-425 [pilon] NODE_4391_length_672_cov_17.112523:1-672 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 223, Coverage: 20, minDepth: 5 [pilon] Confirmed 469 of 672 bases (69.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4391_length_672_cov_17.112523:1-672 [pilon] Processing NODE_3408_length_797_cov_28.792899:1-797 [pilon] NODE_802_length_1626_cov_2.181395:1-1626 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 85, Coverage: 7, minDepth: 5 [pilon] Confirmed 937 of 1626 bases (57.63%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_802_length_1626_cov_2.181395:1-1626 [pilon] Processing NODE_14080_length_243_cov_13.622951:1-243 [pilon] NODE_14946_length_243_cov_6.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14946_length_243_cov_6.147541:1-243 [pilon] Processing NODE_2081_length_1064_cov_12.549311:1-1064 [pilon] NODE_15001_length_243_cov_5.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15001_length_243_cov_5.385246:1-243 [pilon] Processing NODE_7215_length_459_cov_20.218935:1-459 [pilon] NODE_8236_length_407_cov_4.940559:1-407 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 40, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 407 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8236_length_407_cov_4.940559:1-407 [pilon] Processing NODE_1954_length_1096_cov_24.621538:1-1096 [pilon] NODE_12079_length_244_cov_22.252033:1-244 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 63, Coverage: 4, minDepth: 5 [pilon] Confirmed 126 of 244 bases (51.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12079_length_244_cov_22.252033:1-244 [pilon] Processing NODE_2790_length_911_cov_1.005063:1-911 [pilon] NODE_8135_length_411_cov_23.289655:1-411 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 140, Coverage: 19, minDepth: 5 [pilon] Confirmed 296 of 411 bases (72.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8135_length_411_cov_23.289655:1-411 [pilon] Processing NODE_15229_length_140_cov_33.526316:1-140 [pilon] NODE_8358_length_402_cov_19.035587:1-402 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 126, Coverage: 25, minDepth: 6 [pilon] Confirmed 367 of 402 bases (91.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8358_length_402_cov_19.035587:1-402 [pilon] Processing NODE_15040_length_242_cov_16.462810:1-242 [pilon] NODE_11919_length_249_cov_12.507812:1-249 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11919_length_249_cov_12.507812:1-249 [pilon] Processing NODE_6822_length_482_cov_1.249307:1-482 [pilon] NODE_1456_length_1279_cov_1.272021:1-1279 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 58, Coverage: 6, minDepth: 5 [pilon] Confirmed 860 of 1279 bases (67.24%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1456_length_1279_cov_1.272021:1-1279 [pilon] Processing NODE_11755_length_255_cov_15.097015:1-255 [pilon] NODE_1057_length_1462_cov_17.407159:1-1462 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 692, Coverage: 49, minDepth: 12 [pilon] Confirmed 1187 of 1462 bases (81.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1057_length_1462_cov_17.407159:1-1462 [pilon] Processing NODE_1679_length_1189_cov_27.430712:1-1189 [pilon] NODE_5780_length_557_cov_6.763761:1-557 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 119, Coverage: 13, minDepth: 5 [pilon] Confirmed 389 of 557 bases (69.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5780_length_557_cov_6.763761:1-557 [pilon] Processing NODE_8032_length_417_cov_9.199324:1-417 [pilon] NODE_4017_length_714_cov_2.441821:1-714 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 45, Coverage: 7, minDepth: 5 [pilon] Confirmed 434 of 714 bases (60.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4017_length_714_cov_2.441821:1-714 [pilon] Processing NODE_4753_length_639_cov_11.754826:1-639 [pilon] NODE_12497_length_243_cov_29.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12497_length_243_cov_29.163934:1-243 [pilon] Processing NODE_11591_length_261_cov_7.192857:1-261 [pilon] NODE_1212_length_1385_cov_12.052215:1-1385 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 394, Coverage: 27, minDepth: 7 [pilon] Confirmed 1313 of 1385 bases (94.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1212_length_1385_cov_12.052215:1-1385 [pilon] Processing NODE_2359_length_999_cov_3.201595:1-999 [pilon] NODE_14170_length_243_cov_12.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14170_length_243_cov_12.909836:1-243 [pilon] Processing NODE_8913_length_371_cov_8.256000:1-371 [pilon] NODE_5966_length_543_cov_32.798578:1-543 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 315, Coverage: 35, minDepth: 9 [pilon] Confirmed 347 of 543 bases (63.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5966_length_543_cov_32.798578:1-543 [pilon] Processing NODE_3121_length_848_cov_5.158184:1-848 [pilon] NODE_13618_length_243_cov_17.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13618_length_243_cov_17.327869:1-243 [pilon] Processing NODE_5705_length_563_cov_17.029412:1-563 [pilon] NODE_7771_length_429_cov_10.464286:1-429 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 76, Coverage: 5, minDepth: 5 [pilon] Confirmed 200 of 429 bases (46.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7771_length_429_cov_10.464286:1-429 [pilon] Processing NODE_2369_length_998_cov_9.152794:1-998 [pilon] NODE_3090_length_855_cov_2.564033:1-855 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 52, Coverage: 7, minDepth: 5 [pilon] Confirmed 594 of 855 bases (69.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3090_length_855_cov_2.564033:1-855 [pilon] Processing NODE_8252_length_406_cov_16.273684:1-406 [pilon] NODE_4947_length_623_cov_0.715139:1-623 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 14, Coverage: 2, minDepth: 5 [pilon] Confirmed 49 of 623 bases (7.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4947_length_623_cov_0.715139:1-623 [pilon] Processing NODE_6439_length_507_cov_24.556995:1-507 [pilon] NODE_8668_length_384_cov_15.049430:1-384 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 78, Coverage: 13, minDepth: 5 [pilon] Confirmed 282 of 384 bases (73.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8668_length_384_cov_15.049430:1-384 [pilon] Processing NODE_12330_length_243_cov_32.590164:1-243 [pilon] NODE_5169_length_604_cov_4.165631:1-604 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 61, Coverage: 11, minDepth: 5 [pilon] Confirmed 475 of 604 bases (78.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5169_length_604_cov_4.165631:1-604 [pilon] Processing NODE_11155_length_277_cov_17.333333:1-277 [pilon] NODE_11482_length_264_cov_15.699301:1-264 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 41, Coverage: 7, minDepth: 5 [pilon] Confirmed 212 of 264 bases (80.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11482_length_264_cov_15.699301:1-264 [pilon] Processing NODE_10178_length_318_cov_15.852792:1-318 [pilon] NODE_885_length_1570_cov_6.926846:1-1570 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 277, Coverage: 17, minDepth: 5 [pilon] Confirmed 1174 of 1570 bases (74.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_885_length_1570_cov_6.926846:1-1570 [pilon] Processing NODE_5672_length_565_cov_18.867117:1-565 [pilon] NODE_3408_length_797_cov_28.792899:1-797 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 438, Coverage: 49, minDepth: 12 [pilon] Confirmed 604 of 797 bases (75.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3408_length_797_cov_28.792899:1-797 [pilon] Processing NODE_9861_length_331_cov_22.585714:1-331 [pilon] NODE_7850_length_425_cov_4.796053:1-425 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 51, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 425 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7850_length_425_cov_4.796053:1-425 [pilon] Processing NODE_4874_length_629_cov_3.001969:1-629 [pilon] NODE_3919_length_725_cov_23.612583:1-725 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 342, Coverage: 44, minDepth: 11 [pilon] Confirmed 552 of 725 bases (76.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3919_length_725_cov_23.612583:1-725 [pilon] Processing NODE_14511_length_243_cov_10.245902:1-243 [pilon] NODE_11755_length_255_cov_15.097015:1-255 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 51, Coverage: 3, minDepth: 5 [pilon] Confirmed 39 of 255 bases (15.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11755_length_255_cov_15.097015:1-255 [pilon] Processing NODE_3794_length_741_cov_14.970968:1-741 [pilon] NODE_7215_length_459_cov_20.218935:1-459 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 142, Coverage: 20, minDepth: 5 [pilon] Confirmed 308 of 459 bases (67.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7215_length_459_cov_20.218935:1-459 [pilon] Processing NODE_5157_length_605_cov_19.045455:1-605 [pilon] NODE_14080_length_243_cov_13.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14080_length_243_cov_13.622951:1-243 [pilon] Processing NODE_12847_length_243_cov_24.549180:1-243 [pilon] NODE_8032_length_417_cov_9.199324:1-417 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 76, Coverage: 12, minDepth: 5 [pilon] Confirmed 295 of 417 bases (70.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8032_length_417_cov_9.199324:1-417 [pilon] Processing NODE_10028_length_324_cov_21.049261:1-324 [pilon] NODE_2081_length_1064_cov_12.549311:1-1064 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 291, Coverage: 26, minDepth: 7 [pilon] Confirmed 938 of 1064 bases (88.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2081_length_1064_cov_12.549311:1-1064 [pilon] Processing NODE_1233_length_1372_cov_12.067946:1-1372 [pilon] NODE_15040_length_242_cov_16.462810:1-242 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 53, Coverage: 4, minDepth: 5 [pilon] Confirmed 115 of 242 bases (47.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15040_length_242_cov_16.462810:1-242 [pilon] Processing NODE_160_length_2687_cov_23.586126:1-2687 [pilon] NODE_2790_length_911_cov_1.005063:1-911 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 23, Coverage: 3, minDepth: 5 [pilon] Confirmed 218 of 911 bases (23.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2790_length_911_cov_1.005063:1-911 [pilon] Processing NODE_9376_length_351_cov_18.026087:1-351 [pilon] NODE_15229_length_140_cov_33.526316:1-140 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 140 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15229_length_140_cov_33.526316:1-140 [pilon] Processing NODE_14408_length_243_cov_11.024590:1-243 [pilon] NODE_1954_length_1096_cov_24.621538:1-1096 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 597, Coverage: 40, minDepth: 10 [pilon] Confirmed 871 of 1096 bases (79.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1954_length_1096_cov_24.621538:1-1096 [pilon] Processing NODE_2175_length_1040_cov_11.780196:1-1040 [pilon] NODE_6822_length_482_cov_1.249307:1-482 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 274 of 482 bases (56.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6822_length_482_cov_1.249307:1-482 [pilon] Processing NODE_3848_length_734_cov_27.427406:1-734 [pilon] NODE_4753_length_639_cov_11.754826:1-639 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 205, Coverage: 14, minDepth: 5 [pilon] Confirmed 442 of 639 bases (69.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4753_length_639_cov_11.754826:1-639 [pilon] Processing NODE_8435_length_398_cov_10.342960:1-398 [pilon] NODE_12330_length_243_cov_32.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12330_length_243_cov_32.590164:1-243 [pilon] Processing NODE_10991_length_285_cov_8.603659:1-285 [pilon] NODE_6439_length_507_cov_24.556995:1-507 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 249, Coverage: 23, minDepth: 6 [pilon] Confirmed 255 of 507 bases (50.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6439_length_507_cov_24.556995:1-507 [pilon] Processing NODE_8229_length_407_cov_15.905594:1-407 [pilon] NODE_11155_length_277_cov_17.333333:1-277 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 48, Coverage: 5, minDepth: 5 [pilon] Confirmed 198 of 277 bases (71.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11155_length_277_cov_17.333333:1-277 [pilon] Processing NODE_251_length_2336_cov_3.077652:1-2336 [pilon] NODE_9861_length_331_cov_22.585714:1-331 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 123, Coverage: 14, minDepth: 5 [pilon] Confirmed 304 of 331 bases (91.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9861_length_331_cov_22.585714:1-331 [pilon] Processing NODE_13598_length_243_cov_17.516393:1-243 [pilon] NODE_3121_length_848_cov_5.158184:1-848 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 95, Coverage: 14, minDepth: 5 [pilon] Confirmed 744 of 848 bases (87.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3121_length_848_cov_5.158184:1-848 [pilon] Processing NODE_180_length_2562_cov_6.788202:1-2562 [pilon] NODE_2359_length_999_cov_3.201595:1-999 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 75, Coverage: 10, minDepth: 5 [pilon] Confirmed 708 of 999 bases (70.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2359_length_999_cov_3.201595:1-999 [pilon] Processing NODE_5491_length_578_cov_18.431072:1-578 [pilon] NODE_8913_length_371_cov_8.256000:1-371 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 54, Coverage: 11, minDepth: 5 [pilon] Confirmed 288 of 371 bases (77.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8913_length_371_cov_8.256000:1-371 [pilon] Processing NODE_14255_length_243_cov_12.221311:1-243 [pilon] NODE_11591_length_261_cov_7.192857:1-261 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 19, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11591_length_261_cov_7.192857:1-261 [pilon] Processing NODE_2117_length_1055_cov_1.367238:1-1055 [pilon] NODE_1679_length_1189_cov_27.430712:1-1189 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 581, Coverage: 40, minDepth: 10 [pilon] Confirmed 996 of 1189 bases (83.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1679_length_1189_cov_27.430712:1-1189 [pilon] Processing NODE_12816_length_243_cov_24.868852:1-243 [pilon] NODE_5705_length_563_cov_17.029412:1-563 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 251, Coverage: 33, minDepth: 8 [pilon] Confirmed 431 of 563 bases (76.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5705_length_563_cov_17.029412:1-563 [pilon] Processing NODE_6899_length_477_cov_23.432584:1-477 [pilon] NODE_5672_length_565_cov_18.867117:1-565 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 178, Coverage: 26, minDepth: 7 [pilon] Confirmed 332 of 565 bases (58.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5672_length_565_cov_18.867117:1-565 [pilon] Processing NODE_9631_length_340_cov_21.095890:1-340 [pilon] NODE_8252_length_406_cov_16.273684:1-406 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 97, Coverage: 17, minDepth: 5 [pilon] Confirmed 329 of 406 bases (81.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8252_length_406_cov_16.273684:1-406 [pilon] Processing NODE_4507_length_661_cov_2.240741:1-661 [pilon] NODE_2369_length_998_cov_9.152794:1-998 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 228, Coverage: 19, minDepth: 5 [pilon] Confirmed 907 of 998 bases (90.88%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2369_length_998_cov_9.152794:1-998 [pilon] Processing NODE_2430_length_982_cov_25.997677:1-982 [pilon] NODE_10178_length_318_cov_15.852792:1-318 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 66, Coverage: 9, minDepth: 5 [pilon] Confirmed 251 of 318 bases (78.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10178_length_318_cov_15.852792:1-318 [pilon] Processing NODE_1042_length_1473_cov_13.505178:1-1473 [pilon] NODE_14511_length_243_cov_10.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14511_length_243_cov_10.245902:1-243 [pilon] Processing NODE_3920_length_725_cov_8.698675:1-725 [pilon] NODE_5157_length_605_cov_19.045455:1-605 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 312, Coverage: 36, minDepth: 9 [pilon] Confirmed 429 of 605 bases (70.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5157_length_605_cov_19.045455:1-605 [pilon] Processing NODE_5404_length_584_cov_2.362851:1-584 [pilon] NODE_4874_length_629_cov_3.001969:1-629 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 42, Coverage: 8, minDepth: 5 [pilon] Confirmed 366 of 629 bases (58.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4874_length_629_cov_3.001969:1-629 [pilon] Processing NODE_2328_length_1005_cov_1.343891:1-1005 [pilon] NODE_9376_length_351_cov_18.026087:1-351 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 99, Coverage: 13, minDepth: 5 [pilon] Confirmed 242 of 351 bases (68.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9376_length_351_cov_18.026087:1-351 [pilon] Processing NODE_9015_length_366_cov_10.346939:1-366 [pilon] NODE_3794_length_741_cov_14.970968:1-741 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 222, Coverage: 30, minDepth: 8 [pilon] Confirmed 645 of 741 bases (87.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3794_length_741_cov_14.970968:1-741 [pilon] Processing NODE_13403_length_243_cov_19.286885:1-243 [pilon] NODE_10028_length_324_cov_21.049261:1-324 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 102, Coverage: 19, minDepth: 5 [pilon] Confirmed 263 of 324 bases (81.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10028_length_324_cov_21.049261:1-324 [pilon] Processing NODE_4213_length_692_cov_13.096322:1-692 [pilon] NODE_13598_length_243_cov_17.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13598_length_243_cov_17.516393:1-243 [pilon] Processing NODE_1166_length_1411_cov_19.021705:1-1411 [pilon] NODE_12847_length_243_cov_24.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12847_length_243_cov_24.549180:1-243 [pilon] Processing NODE_5354_length_588_cov_2.901499:1-588 [pilon] NODE_1233_length_1372_cov_12.067946:1-1372 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 379, Coverage: 29, minDepth: 7 [pilon] Confirmed 1098 of 1372 bases (80.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1233_length_1372_cov_12.067946:1-1372 [pilon] Processing NODE_5439_length_581_cov_15.167391:1-581 [pilon] NODE_12816_length_243_cov_24.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12816_length_243_cov_24.868852:1-243 [pilon] Processing NODE_14489_length_243_cov_10.352459:1-243 [pilon] NODE_2175_length_1040_cov_11.780196:1-1040 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 266, Coverage: 23, minDepth: 6 [pilon] Confirmed 975 of 1040 bases (93.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2175_length_1040_cov_11.780196:1-1040 [pilon] Processing NODE_15063_length_238_cov_29.581197:1-238 [pilon] NODE_9631_length_340_cov_21.095890:1-340 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 83, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 340 bases (38.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9631_length_340_cov_21.095890:1-340 [pilon] Processing NODE_4604_length_652_cov_42.024482:1-652 [pilon] NODE_14408_length_243_cov_11.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14408_length_243_cov_11.024590:1-243 [pilon] Processing NODE_11517_length_263_cov_19.021127:1-263 [pilon] NODE_8229_length_407_cov_15.905594:1-407 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 89, Coverage: 11, minDepth: 5 [pilon] Confirmed 251 of 407 bases (61.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8229_length_407_cov_15.905594:1-407 [pilon] Processing NODE_10481_length_306_cov_7.513514:1-306 [pilon] NODE_8435_length_398_cov_10.342960:1-398 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 106, Coverage: 19, minDepth: 5 [pilon] Confirmed 312 of 398 bases (78.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8435_length_398_cov_10.342960:1-398 [pilon] Processing NODE_6869_length_480_cov_0.518106:1-480 [pilon] NODE_3848_length_734_cov_27.427406:1-734 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 392, Coverage: 54, minDepth: 14 [pilon] Confirmed 560 of 734 bases (76.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3848_length_734_cov_27.427406:1-734 [pilon] Processing NODE_8359_length_402_cov_18.473310:1-402 [pilon] NODE_10991_length_285_cov_8.603659:1-285 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10991_length_285_cov_8.603659:1-285 [pilon] Processing NODE_5831_length_553_cov_12.858796:1-553 [pilon] NODE_2117_length_1055_cov_1.367238:1-1055 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 39, Coverage: 5, minDepth: 5 [pilon] Confirmed 536 of 1055 bases (50.81%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2117_length_1055_cov_1.367238:1-1055 [pilon] Processing NODE_127_length_2841_cov_16.661397:1-2841 [pilon] NODE_160_length_2687_cov_23.586126:1-2687 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 1436, Coverage: 61, minDepth: 15 [pilon] Confirmed 2309 of 2687 bases (85.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_160_length_2687_cov_23.586126:1-2687 [pilon] Processing NODE_13330_length_243_cov_20.000000:1-243 [pilon] NODE_14255_length_243_cov_12.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14255_length_243_cov_12.221311:1-243 [pilon] Processing NODE_407_length_2040_cov_9.911933:1-2040 [pilon] NODE_5491_length_578_cov_18.431072:1-578 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 206, Coverage: 27, minDepth: 7 [pilon] Confirmed 407 of 578 bases (70.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5491_length_578_cov_18.431072:1-578 [pilon] Processing NODE_9703_length_338_cov_25.248848:1-338 [pilon] NODE_5404_length_584_cov_2.362851:1-584 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 42, Coverage: 7, minDepth: 5 [pilon] Confirmed 340 of 584 bases (58.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5404_length_584_cov_2.362851:1-584 [pilon] Processing NODE_13291_length_243_cov_20.295082:1-243 [pilon] NODE_6899_length_477_cov_23.432584:1-477 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 205, Coverage: 35, minDepth: 9 [pilon] Confirmed 364 of 477 bases (76.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6899_length_477_cov_23.432584:1-477 [pilon] Processing NODE_3061_length_861_cov_2.774324:1-861 [pilon] NODE_251_length_2336_cov_3.077652:1-2336 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 193, Coverage: 11, minDepth: 5 [pilon] Confirmed 1801 of 2336 bases (77.10%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_251_length_2336_cov_3.077652:1-2336 [pilon] Processing NODE_14599_length_243_cov_9.393443:1-243 [pilon] NODE_180_length_2562_cov_6.788202:1-2562 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 406, Coverage: 20, minDepth: 5 [pilon] Confirmed 2355 of 2562 bases (91.92%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_180_length_2562_cov_6.788202:1-2562 [pilon] Processing NODE_14449_length_243_cov_10.688525:1-243 [pilon] NODE_4507_length_661_cov_2.240741:1-661 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 38, Coverage: 6, minDepth: 5 [pilon] Confirmed 402 of 661 bases (60.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4507_length_661_cov_2.240741:1-661 [pilon] Processing NODE_587_length_1823_cov_1.106933:1-1823 [pilon] NODE_2430_length_982_cov_25.997677:1-982 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 486, Coverage: 51, minDepth: 13 [pilon] Confirmed 712 of 982 bases (72.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2430_length_982_cov_25.997677:1-982 [pilon] Processing NODE_10257_length_315_cov_10.149485:1-315 [pilon] NODE_1042_length_1473_cov_13.505178:1-1473 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 494, Coverage: 24, minDepth: 6 [pilon] Confirmed 1138 of 1473 bases (77.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1042_length_1473_cov_13.505178:1-1473 [pilon] Processing NODE_15051_length_240_cov_24.647059:1-240 [pilon] NODE_2328_length_1005_cov_1.343891:1-1005 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 41, Coverage: 5, minDepth: 5 [pilon] Confirmed 474 of 1005 bases (47.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2328_length_1005_cov_1.343891:1-1005 [pilon] Processing NODE_7206_length_459_cov_44.097633:1-459 [pilon] NODE_3920_length_725_cov_8.698675:1-725 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 141, Coverage: 15, minDepth: 5 [pilon] Confirmed 610 of 725 bases (84.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3920_length_725_cov_8.698675:1-725 [pilon] Processing NODE_6097_length_532_cov_20.839416:1-532 [pilon] NODE_14489_length_243_cov_10.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14489_length_243_cov_10.352459:1-243 [pilon] Processing NODE_5058_length_614_cov_12.182556:1-614 [pilon] NODE_5439_length_581_cov_15.167391:1-581 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 166, Coverage: 23, minDepth: 6 [pilon] Confirmed 488 of 581 bases (83.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5439_length_581_cov_15.167391:1-581 [pilon] Processing NODE_14365_length_243_cov_11.327869:1-243 [pilon] NODE_9015_length_366_cov_10.346939:1-366 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 75, Coverage: 10, minDepth: 5 [pilon] Confirmed 231 of 366 bases (63.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9015_length_366_cov_10.346939:1-366 [pilon] Processing NODE_4443_length_667_cov_2.003663:1-667 [pilon] NODE_13403_length_243_cov_19.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13403_length_243_cov_19.286885:1-243 [pilon] Processing NODE_8761_length_379_cov_13.368217:1-379 [pilon] NODE_10481_length_306_cov_7.513514:1-306 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10481_length_306_cov_7.513514:1-306 [pilon] Processing NODE_1028_length_1482_cov_2.625276:1-1482 [pilon] NODE_4213_length_692_cov_13.096322:1-692 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 172, Coverage: 25, minDepth: 6 [pilon] Confirmed 450 of 692 bases (65.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4213_length_692_cov_13.096322:1-692 [pilon] Processing NODE_7581_length_438_cov_29.406940:1-438 [pilon] NODE_5354_length_588_cov_2.901499:1-588 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 34, Coverage: 8, minDepth: 5 [pilon] Confirmed 396 of 588 bases (67.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5354_length_588_cov_2.901499:1-588 [pilon] Processing NODE_10561_length_303_cov_8.741758:1-303 [pilon] NODE_13291_length_243_cov_20.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13291_length_243_cov_20.295082:1-243 [pilon] Processing NODE_9326_length_353_cov_30.193966:1-353 [pilon] NODE_11517_length_263_cov_19.021127:1-263 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 59, Coverage: 3, minDepth: 5 [pilon] Confirmed 103 of 263 bases (39.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11517_length_263_cov_19.021127:1-263 [pilon] Processing NODE_10576_length_302_cov_19.011050:1-302 [pilon] NODE_127_length_2841_cov_16.661397:1-2841 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 1089, Coverage: 41, minDepth: 10 [pilon] Confirmed 2330 of 2841 bases (82.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_127_length_2841_cov_16.661397:1-2841 [pilon] Processing NODE_7198_length_460_cov_3.486726:1-460 [pilon] NODE_1166_length_1411_cov_19.021705:1-1411 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 542, Coverage: 33, minDepth: 8 [pilon] Confirmed 1204 of 1411 bases (85.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1166_length_1411_cov_19.021705:1-1411 [pilon] Processing NODE_8986_length_367_cov_17.479675:1-367 [pilon] NODE_15063_length_238_cov_29.581197:1-238 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 90, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 238 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15063_length_238_cov_29.581197:1-238 [pilon] Processing NODE_1509_length_1254_cov_2.321271:1-1254 [pilon] NODE_4604_length_652_cov_42.024482:1-652 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 506, Coverage: 81, minDepth: 20 [pilon] Confirmed 588 of 652 bases (90.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4604_length_652_cov_42.024482:1-652 [pilon] Processing NODE_12093_length_244_cov_12.626016:1-244 [pilon] NODE_8359_length_402_cov_18.473310:1-402 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 84, Coverage: 6, minDepth: 5 [pilon] Confirmed 187 of 402 bases (46.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8359_length_402_cov_18.473310:1-402 [pilon] Processing NODE_12339_length_243_cov_32.459016:1-243 [pilon] NODE_5831_length_553_cov_12.858796:1-553 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 142, Coverage: 22, minDepth: 6 [pilon] Confirmed 465 of 553 bases (84.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5831_length_553_cov_12.858796:1-553 [pilon] Processing NODE_12144_length_243_cov_39.893443:1-243 [pilon] NODE_6869_length_480_cov_0.518106:1-480 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 480 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6869_length_480_cov_0.518106:1-480 [pilon] Processing NODE_14702_length_243_cov_8.549180:1-243 [pilon] NODE_9703_length_338_cov_25.248848:1-338 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 120, Coverage: 10, minDepth: 5 [pilon] Confirmed 230 of 338 bases (68.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9703_length_338_cov_25.248848:1-338 [pilon] Processing NODE_13114_length_243_cov_21.844262:1-243 [pilon] NODE_407_length_2040_cov_9.911933:1-2040 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 545, Coverage: 29, minDepth: 7 [pilon] Confirmed 1376 of 2040 bases (67.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_407_length_2040_cov_9.911933:1-2040 [pilon] Processing NODE_12673_length_243_cov_26.549180:1-243 [pilon] NODE_14599_length_243_cov_9.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14599_length_243_cov_9.393443:1-243 [pilon] Processing NODE_7093_length_465_cov_20.805233:1-465 [pilon] NODE_3061_length_861_cov_2.774324:1-861 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 47, Coverage: 7, minDepth: 5 [pilon] Confirmed 424 of 861 bases (49.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3061_length_861_cov_2.774324:1-861 [pilon] Processing NODE_13471_length_243_cov_18.672131:1-243 [pilon] NODE_14449_length_243_cov_10.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14449_length_243_cov_10.688525:1-243 [pilon] Processing NODE_437_length_1985_cov_3.260193:1-1985 [pilon] NODE_13330_length_243_cov_20.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13330_length_243_cov_20.000000:1-243 [pilon] Processing NODE_3684_length_757_cov_5.872642:1-757 [pilon] NODE_14365_length_243_cov_11.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14365_length_243_cov_11.327869:1-243 [pilon] Processing NODE_4361_length_675_cov_1.851986:1-675 [pilon] NODE_10257_length_315_cov_10.149485:1-315 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 27, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10257_length_315_cov_10.149485:1-315 [pilon] Processing NODE_1344_length_1323_cov_3.363561:1-1323 [pilon] NODE_587_length_1823_cov_1.106933:1-1823 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 65, Coverage: 5, minDepth: 5 [pilon] Confirmed 656 of 1823 bases (35.98%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_587_length_1823_cov_1.106933:1-1823 [pilon] Processing NODE_2238_length_1022_cov_32.932297:1-1022 [pilon] NODE_15051_length_240_cov_24.647059:1-240 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 66, Coverage: 3, minDepth: 5 [pilon] Confirmed 66 of 240 bases (27.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15051_length_240_cov_24.647059:1-240 [pilon] Processing NODE_1894_length_1114_cov_41.383686:1-1114 [pilon] NODE_1028_length_1482_cov_2.625276:1-1482 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 95, Coverage: 8, minDepth: 5 [pilon] Confirmed 907 of 1482 bases (61.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1028_length_1482_cov_2.625276:1-1482 [pilon] Processing NODE_8860_length_374_cov_16.197628:1-374 [pilon] NODE_9326_length_353_cov_30.193966:1-353 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 130, Coverage: 14, minDepth: 5 [pilon] Confirmed 252 of 353 bases (71.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9326_length_353_cov_30.193966:1-353 [pilon] Processing NODE_14988_length_243_cov_5.598361:1-243 [pilon] NODE_6097_length_532_cov_20.839416:1-532 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 199, Coverage: 30, minDepth: 8 [pilon] Confirmed 419 of 532 bases (78.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6097_length_532_cov_20.839416:1-532 [pilon] Processing NODE_8736_length_381_cov_7.607692:1-381 [pilon] NODE_10576_length_302_cov_19.011050:1-302 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 75, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 302 bases (43.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10576_length_302_cov_19.011050:1-302 [pilon] Processing NODE_13378_length_243_cov_19.573770:1-243 [pilon] NODE_4443_length_667_cov_2.003663:1-667 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 35, Coverage: 6, minDepth: 5 [pilon] Confirmed 353 of 667 bases (52.92%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4443_length_667_cov_2.003663:1-667 [pilon] Processing NODE_2028_length_1079_cov_1.323591:1-1079 [pilon] NODE_7198_length_460_cov_3.486726:1-460 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 31, Coverage: 8, minDepth: 5 [pilon] Confirmed 285 of 460 bases (61.96%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7198_length_460_cov_3.486726:1-460 [pilon] Processing NODE_1847_length_1130_cov_10.910803:1-1130 [pilon] NODE_7206_length_459_cov_44.097633:1-459 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 320, Coverage: 56, minDepth: 14 [pilon] Confirmed 403 of 459 bases (87.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7206_length_459_cov_44.097633:1-459 [pilon] Processing NODE_11676_length_258_cov_7.401460:1-258 [pilon] NODE_8761_length_379_cov_13.368217:1-379 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 94, Coverage: 7, minDepth: 5 [pilon] Confirmed 278 of 379 bases (73.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8761_length_379_cov_13.368217:1-379 [pilon] Processing NODE_285_length_2271_cov_16.931628:1-2271 [pilon] NODE_5058_length_614_cov_12.182556:1-614 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 130, Coverage: 28, minDepth: 7 [pilon] Confirmed 466 of 614 bases (75.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5058_length_614_cov_12.182556:1-614 [pilon] Processing NODE_5184_length_603_cov_9.458506:1-603 [pilon] NODE_7581_length_438_cov_29.406940:1-438 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 233, Coverage: 19, minDepth: 5 [pilon] Confirmed 206 of 438 bases (47.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7581_length_438_cov_29.406940:1-438 [pilon] Processing NODE_5247_length_597_cov_2.632353:1-597 [pilon] NODE_10561_length_303_cov_8.741758:1-303 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 303 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10561_length_303_cov_8.741758:1-303 [pilon] Processing NODE_4963_length_621_cov_26.044000:1-621 [pilon] NODE_8986_length_367_cov_17.479675:1-367 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 76, Coverage: 9, minDepth: 5 [pilon] Confirmed 217 of 367 bases (59.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8986_length_367_cov_17.479675:1-367 [pilon] Processing NODE_10889_length_288_cov_24.383234:1-288 [pilon] NODE_4361_length_675_cov_1.851986:1-675 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 304 of 675 bases (45.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4361_length_675_cov_1.851986:1-675 [pilon] Processing NODE_1422_length_1291_cov_23.480342:1-1291 [pilon] NODE_12093_length_244_cov_12.626016:1-244 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 32, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12093_length_244_cov_12.626016:1-244 [pilon] Processing NODE_7722_length_431_cov_44.090323:1-431 [pilon] NODE_12144_length_243_cov_39.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 134, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12144_length_243_cov_39.893443:1-243 [pilon] Processing NODE_10055_length_323_cov_18.613861:1-323 [pilon] NODE_1509_length_1254_cov_2.321271:1-1254 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 84, Coverage: 9, minDepth: 5 [pilon] Confirmed 989 of 1254 bases (78.87%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1509_length_1254_cov_2.321271:1-1254 [pilon] Processing NODE_943_length_1533_cov_24.207507:1-1533 [pilon] NODE_14702_length_243_cov_8.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14702_length_243_cov_8.549180:1-243 [pilon] Processing NODE_7011_length_471_cov_1.040000:1-471 [pilon] NODE_8860_length_374_cov_16.197628:1-374 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 90, Coverage: 5, minDepth: 5 [pilon] Confirmed 190 of 374 bases (50.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8860_length_374_cov_16.197628:1-374 [pilon] Processing NODE_14076_length_243_cov_13.647541:1-243 [pilon] NODE_13114_length_243_cov_21.844262:1-243 log: [pilon] NODE_12339_length_243_cov_32.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12339_length_243_cov_32.459016:1-243 [pilon] Finished processing NODE_13114_length_243_cov_21.844262:1-243 [pilon] Processing NODE_8920_length_370_cov_12.313253:1-370 [pilon] Processing NODE_2952_length_881_cov_17.484211:1-881 [pilon] NODE_13378_length_243_cov_19.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13378_length_243_cov_19.573770:1-243 [pilon] Processing NODE_14505_length_243_cov_10.270492:1-243 [pilon] NODE_14988_length_243_cov_5.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14988_length_243_cov_5.598361:1-243 [pilon] Processing NODE_7294_length_454_cov_20.234234:1-454 [pilon] NODE_12673_length_243_cov_26.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12673_length_243_cov_26.549180:1-243 [pilon] Processing NODE_7019_length_470_cov_28.197708:1-470 [pilon] NODE_7093_length_465_cov_20.805233:1-465 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 172, Coverage: 26, minDepth: 7 [pilon] Confirmed 329 of 465 bases (70.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7093_length_465_cov_20.805233:1-465 [pilon] Processing NODE_12390_length_243_cov_31.311475:1-243 [pilon] NODE_13471_length_243_cov_18.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13471_length_243_cov_18.672131:1-243 [pilon] Processing NODE_13337_length_243_cov_19.926230:1-243 [pilon] NODE_3684_length_757_cov_5.872642:1-757 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 98, Coverage: 15, minDepth: 5 [pilon] Confirmed 694 of 757 bases (91.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3684_length_757_cov_5.872642:1-757 [pilon] Processing NODE_8788_length_378_cov_13.424125:1-378 [pilon] NODE_437_length_1985_cov_3.260193:1-1985 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 157, Coverage: 10, minDepth: 5 [pilon] Confirmed 1555 of 1985 bases (78.34%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_437_length_1985_cov_3.260193:1-1985 [pilon] Processing NODE_6875_length_479_cov_20.351955:1-479 [pilon] NODE_1847_length_1130_cov_10.910803:1-1130 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 295, Coverage: 25, minDepth: 6 [pilon] Confirmed 933 of 1130 bases (82.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1847_length_1130_cov_10.910803:1-1130 [pilon] Processing NODE_12335_length_243_cov_32.508197:1-243 [pilon] NODE_1344_length_1323_cov_3.363561:1-1323 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 111, Coverage: 11, minDepth: 5 [pilon] Confirmed 1082 of 1323 bases (81.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1344_length_1323_cov_3.363561:1-1323 [pilon] Processing NODE_988_length_1504_cov_4.458424:1-1504 [pilon] NODE_2238_length_1022_cov_32.932297:1-1022 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 705, Coverage: 75, minDepth: 19 [pilon] Confirmed 721 of 1022 bases (70.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2238_length_1022_cov_32.932297:1-1022 [pilon] Processing NODE_13623_length_243_cov_17.286885:1-243 [pilon] NODE_8736_length_381_cov_7.607692:1-381 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 54, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 381 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8736_length_381_cov_7.607692:1-381 [pilon] Processing NODE_1977_length_1092_cov_30.497425:1-1092 [pilon] NODE_1894_length_1114_cov_41.383686:1-1114 log: [pilon] frags shovill.bam: coverage 87 [pilon] Total Reads: 933, Coverage: 87, minDepth: 22 [pilon] Confirmed 952 of 1114 bases (85.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1894_length_1114_cov_41.383686:1-1114 [pilon] Processing NODE_12360_length_243_cov_31.844262:1-243 [pilon] NODE_11676_length_258_cov_7.401460:1-258 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 25, Coverage: 8, minDepth: 5 [pilon] Confirmed 195 of 258 bases (75.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11676_length_258_cov_7.401460:1-258 [pilon] Processing NODE_1941_length_1100_cov_8.596527:1-1100 [pilon] NODE_2028_length_1079_cov_1.323591:1-1079 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 50, Coverage: 5, minDepth: 5 [pilon] Confirmed 596 of 1079 bases (55.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2028_length_1079_cov_1.323591:1-1079 [pilon] Processing NODE_10004_length_325_cov_12.799020:1-325 [pilon] NODE_5247_length_597_cov_2.632353:1-597 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 31, Coverage: 7, minDepth: 5 [pilon] Confirmed 422 of 597 bases (70.69%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5247_length_597_cov_2.632353:1-597 [pilon] NODE_285_length_2271_cov_16.931628:1-2271 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 863, Coverage: 40, minDepth: 10 [pilon] Confirmed 2011 of 2271 bases (88.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_285_length_2271_cov_16.931628:1-2271 [pilon] Processing NODE_6170_length_527_cov_1.184729:1-527 [pilon] Processing NODE_14705_length_243_cov_8.516393:1-243 [pilon] NODE_1422_length_1291_cov_23.480342:1-1291 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 567, Coverage: 40, minDepth: 10 [pilon] Confirmed 1076 of 1291 bases (83.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1422_length_1291_cov_23.480342:1-1291 [pilon] Processing NODE_5418_length_582_cov_59.381779:1-582 [pilon] NODE_5184_length_603_cov_9.458506:1-603 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 101, Coverage: 9, minDepth: 5 [pilon] Confirmed 363 of 603 bases (60.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5184_length_603_cov_9.458506:1-603 [pilon] Processing NODE_2831_length_905_cov_9.854592:1-905 [pilon] NODE_14076_length_243_cov_13.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14076_length_243_cov_13.647541:1-243 [pilon] Processing NODE_9640_length_339_cov_44.683486:1-339 [pilon] NODE_7294_length_454_cov_20.234234:1-454 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 155, Coverage: 15, minDepth: 5 [pilon] Confirmed 273 of 454 bases (60.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7294_length_454_cov_20.234234:1-454 [pilon] Processing NODE_5417_length_582_cov_77.019523:1-582 [pilon] NODE_4963_length_621_cov_26.044000:1-621 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 303, Coverage: 41, minDepth: 10 [pilon] Confirmed 474 of 621 bases (76.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4963_length_621_cov_26.044000:1-621 [pilon] Processing NODE_13300_length_243_cov_20.237705:1-243 [pilon] NODE_14505_length_243_cov_10.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14505_length_243_cov_10.270492:1-243 [pilon] Processing NODE_13913_length_243_cov_14.795082:1-243 [pilon] NODE_7722_length_431_cov_44.090323:1-431 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 316, Coverage: 61, minDepth: 15 [pilon] Confirmed 357 of 431 bases (82.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7722_length_431_cov_44.090323:1-431 [pilon] Processing NODE_13189_length_243_cov_21.188525:1-243 [pilon] NODE_10889_length_288_cov_24.383234:1-288 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 92, Coverage: 11, minDepth: 5 [pilon] Confirmed 235 of 288 bases (81.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10889_length_288_cov_24.383234:1-288 [pilon] Processing NODE_4536_length_658_cov_9.162011:1-658 [pilon] NODE_8920_length_370_cov_12.313253:1-370 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 76, Coverage: 10, minDepth: 5 [pilon] Confirmed 255 of 370 bases (68.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8920_length_370_cov_12.313253:1-370 [pilon] Processing NODE_866_length_1585_cov_27.694672:1-1585 [pilon] NODE_7011_length_471_cov_1.040000:1-471 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 14, Coverage: 4, minDepth: 5 [pilon] Confirmed 222 of 471 bases (47.13%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7011_length_471_cov_1.040000:1-471 [pilon] Processing NODE_5183_length_603_cov_11.294606:1-603 [pilon] NODE_12335_length_243_cov_32.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 91, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12335_length_243_cov_32.508197:1-243 [pilon] Processing NODE_15039_length_242_cov_18.975207:1-242 [pilon] NODE_10055_length_323_cov_18.613861:1-323 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 82, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 323 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10055_length_323_cov_18.613861:1-323 [pilon] Processing NODE_9242_length_356_cov_23.876596:1-356 [pilon] NODE_943_length_1533_cov_24.207507:1-1533 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 805, Coverage: 66, minDepth: 17 [pilon] Confirmed 1263 of 1533 bases (82.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_943_length_1533_cov_24.207507:1-1533 [pilon] Processing NODE_7552_length_441_cov_2.243750:1-441 [pilon] NODE_2952_length_881_cov_17.484211:1-881 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 306, Coverage: 34, minDepth: 9 [pilon] Confirmed 805 of 881 bases (91.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2952_length_881_cov_17.484211:1-881 [pilon] Processing NODE_1560_length_1233_cov_24.608813:1-1233 [pilon] NODE_7019_length_470_cov_28.197708:1-470 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 226, Coverage: 33, minDepth: 8 [pilon] Confirmed 341 of 470 bases (72.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7019_length_470_cov_28.197708:1-470 [pilon] Processing NODE_236_length_2392_cov_37.832232:1-2392 [pilon] NODE_8788_length_378_cov_13.424125:1-378 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 93, Coverage: 6, minDepth: 5 [pilon] Confirmed 170 of 378 bases (44.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8788_length_378_cov_13.424125:1-378 [pilon] Processing NODE_589_length_1822_cov_1.279248:1-1822 [pilon] NODE_12390_length_243_cov_31.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 89, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12390_length_243_cov_31.311475:1-243 [pilon] Processing NODE_5915_length_546_cov_38.371765:1-546 [pilon] NODE_13337_length_243_cov_19.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13337_length_243_cov_19.926230:1-243 [pilon] Processing NODE_1357_length_1316_cov_2.500418:1-1316 [pilon] NODE_6875_length_479_cov_20.351955:1-479 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 155, Coverage: 31, minDepth: 8 [pilon] Confirmed 431 of 479 bases (89.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6875_length_479_cov_20.351955:1-479 [pilon] Processing NODE_4699_length_643_cov_22.676245:1-643 [pilon] NODE_6170_length_527_cov_1.184729:1-527 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 291 of 527 bases (55.22%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6170_length_527_cov_1.184729:1-527 [pilon] Processing NODE_14274_length_243_cov_12.049180:1-243 [pilon] NODE_13623_length_243_cov_17.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13623_length_243_cov_17.286885:1-243 [pilon] Processing NODE_10459_length_306_cov_15.481081:1-306 [pilon] NODE_988_length_1504_cov_4.458424:1-1504 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 169, Coverage: 15, minDepth: 5 [pilon] Confirmed 1318 of 1504 bases (87.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_988_length_1504_cov_4.458424:1-1504 [pilon] Processing NODE_6799_length_483_cov_16.160221:1-483 [pilon] NODE_9640_length_339_cov_44.683486:1-339 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 149, Coverage: 7, minDepth: 5 [pilon] Confirmed 156 of 339 bases (46.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9640_length_339_cov_44.683486:1-339 [pilon] Processing NODE_9935_length_328_cov_18.521739:1-328 [pilon] NODE_10004_length_325_cov_12.799020:1-325 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 190 of 325 bases (58.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10004_length_325_cov_12.799020:1-325 [pilon] Processing NODE_3580_length_772_cov_24.678955:1-772 [pilon] NODE_1977_length_1092_cov_30.497425:1-1092 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 674, Coverage: 69, minDepth: 17 [pilon] Confirmed 787 of 1092 bases (72.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1977_length_1092_cov_30.497425:1-1092 [pilon] Processing NODE_7160_length_462_cov_10.521994:1-462 [pilon] NODE_12360_length_243_cov_31.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 84, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12360_length_243_cov_31.844262:1-243 [pilon] Processing NODE_13803_length_243_cov_15.639344:1-243 [pilon] NODE_5417_length_582_cov_77.019523:1-582 log: [pilon] frags shovill.bam: coverage 127 [pilon] Total Reads: 802, Coverage: 127, minDepth: 32 [pilon] Confirmed 499 of 582 bases (85.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5417_length_582_cov_77.019523:1-582 [pilon] Processing NODE_12320_length_243_cov_32.688525:1-243 [pilon] NODE_1941_length_1100_cov_8.596527:1-1100 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 228, Coverage: 20, minDepth: 5 [pilon] Confirmed 889 of 1100 bases (80.82%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1941_length_1100_cov_8.596527:1-1100 [pilon] Processing NODE_9645_length_339_cov_28.155963:1-339 [pilon] NODE_14705_length_243_cov_8.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14705_length_243_cov_8.516393:1-243 [pilon] Processing NODE_13269_length_243_cov_20.418033:1-243 [pilon] NODE_15039_length_242_cov_18.975207:1-242 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 43, Coverage: 3, minDepth: 5 [pilon] Confirmed 48 of 242 bases (19.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15039_length_242_cov_18.975207:1-242 [pilon] Processing NODE_13433_length_243_cov_18.975410:1-243 [pilon] NODE_5418_length_582_cov_59.381779:1-582 log: [pilon] frags shovill.bam: coverage 102 [pilon] Total Reads: 604, Coverage: 102, minDepth: 26 [pilon] Confirmed 490 of 582 bases (84.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5418_length_582_cov_59.381779:1-582 [pilon] Processing NODE_2217_length_1029_cov_22.463656:1-1029 [pilon] NODE_866_length_1585_cov_27.694672:1-1585 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 923, Coverage: 66, minDepth: 17 [pilon] Confirmed 1478 of 1585 bases (93.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_866_length_1585_cov_27.694672:1-1585 [pilon] Processing NODE_11152_length_277_cov_20.557692:1-277 [pilon] NODE_2831_length_905_cov_9.854592:1-905 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 189, Coverage: 23, minDepth: 6 [pilon] Confirmed 761 of 905 bases (84.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2831_length_905_cov_9.854592:1-905 [pilon] Processing NODE_11679_length_258_cov_6.788321:1-258 [pilon] NODE_13913_length_243_cov_14.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13913_length_243_cov_14.795082:1-243 [pilon] Processing NODE_1120_length_1430_cov_20.864782:1-1430 [pilon] NODE_13300_length_243_cov_20.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13300_length_243_cov_20.237705:1-243 [pilon] Processing NODE_12426_length_243_cov_30.401639:1-243 [pilon] NODE_7552_length_441_cov_2.243750:1-441 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 25, Coverage: 6, minDepth: 5 [pilon] Confirmed 238 of 441 bases (53.97%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7552_length_441_cov_2.243750:1-441 [pilon] Processing NODE_4789_length_636_cov_1.365049:1-636 [pilon] NODE_13189_length_243_cov_21.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13189_length_243_cov_21.188525:1-243 [pilon] Processing NODE_13018_length_243_cov_22.754098:1-243 [pilon] NODE_4536_length_658_cov_9.162011:1-658 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 117, Coverage: 13, minDepth: 5 [pilon] Confirmed 512 of 658 bases (77.81%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4536_length_658_cov_9.162011:1-658 [pilon] Processing NODE_3594_length_770_cov_8.768875:1-770 [pilon] NODE_9242_length_356_cov_23.876596:1-356 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 137, Coverage: 12, minDepth: 5 [pilon] Confirmed 300 of 356 bases (84.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9242_length_356_cov_23.876596:1-356 [pilon] Processing NODE_3952_length_721_cov_1.716667:1-721 [pilon] NODE_5183_length_603_cov_11.294606:1-603 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 123, Coverage: 14, minDepth: 5 [pilon] Confirmed 422 of 603 bases (69.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5183_length_603_cov_11.294606:1-603 [pilon] Processing NODE_8257_length_406_cov_7.849123:1-406 [pilon] NODE_14274_length_243_cov_12.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14274_length_243_cov_12.049180:1-243 [pilon] Processing NODE_1202_length_1397_cov_3.409875:1-1397 [pilon] NODE_589_length_1822_cov_1.279248:1-1822 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 77, Coverage: 5, minDepth: 5 [pilon] Confirmed 785 of 1822 bases (43.08%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_589_length_1822_cov_1.279248:1-1822 [pilon] Processing NODE_2434_length_981_cov_26.140698:1-981 [pilon] NODE_9935_length_328_cov_18.521739:1-328 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 90, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 328 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9935_length_328_cov_18.521739:1-328 [pilon] Processing NODE_1997_length_1087_cov_31.621118:1-1087 [pilon] NODE_1560_length_1233_cov_24.608813:1-1233 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 603, Coverage: 49, minDepth: 12 [pilon] Confirmed 1182 of 1233 bases (95.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1560_length_1233_cov_24.608813:1-1233 [pilon] Processing NODE_13415_length_243_cov_19.147541:1-243 [pilon] NODE_5915_length_546_cov_38.371765:1-546 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 359, Coverage: 57, minDepth: 14 [pilon] Confirmed 478 of 546 bases (87.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5915_length_546_cov_38.371765:1-546 [pilon] Processing NODE_2958_length_881_cov_2.705263:1-881 [pilon] NODE_236_length_2392_cov_37.832232:1-2392 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 2059, Coverage: 68, minDepth: 17 [pilon] Confirmed 2060 of 2392 bases (86.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_236_length_2392_cov_37.832232:1-2392 [pilon] Processing NODE_10378_length_309_cov_28.101064:1-309 [pilon] NODE_1357_length_1316_cov_2.500418:1-1316 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 104, Coverage: 10, minDepth: 5 [pilon] Confirmed 1134 of 1316 bases (86.17%) [pilon] Corrected 7 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1357_length_1316_cov_2.500418:1-1316 [pilon] Processing NODE_7981_length_419_cov_11.134228:1-419 [pilon] NODE_13433_length_243_cov_18.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13433_length_243_cov_18.975410:1-243 [pilon] Processing NODE_479_length_1931_cov_17.665193:1-1931 [pilon] NODE_4699_length_643_cov_22.676245:1-643 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 282, Coverage: 39, minDepth: 10 [pilon] Confirmed 439 of 643 bases (68.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4699_length_643_cov_22.676245:1-643 [pilon] Processing NODE_2704_length_929_cov_1.230198:1-929 [pilon] NODE_3580_length_772_cov_24.678955:1-772 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 405, Coverage: 42, minDepth: 11 [pilon] Confirmed 574 of 772 bases (74.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3580_length_772_cov_24.678955:1-772 [pilon] Processing NODE_8951_length_369_cov_9.810484:1-369 [pilon] NODE_6799_length_483_cov_16.160221:1-483 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 140, Coverage: 19, minDepth: 5 [pilon] Confirmed 310 of 483 bases (64.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6799_length_483_cov_16.160221:1-483 [pilon] Processing NODE_12965_length_243_cov_23.319672:1-243 [pilon] NODE_10459_length_306_cov_15.481081:1-306 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 65, Coverage: 9, minDepth: 5 [pilon] Confirmed 220 of 306 bases (71.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10459_length_306_cov_15.481081:1-306 [pilon] Processing NODE_14357_length_243_cov_11.393443:1-243 [pilon] NODE_12320_length_243_cov_32.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12320_length_243_cov_32.688525:1-243 [pilon] Processing NODE_2356_length_1000_cov_1.952218:1-1000 [pilon] NODE_13803_length_243_cov_15.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13803_length_243_cov_15.639344:1-243 [pilon] Processing NODE_15175_length_174_cov_5.377358:1-174 [pilon] NODE_11679_length_258_cov_6.788321:1-258 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 16, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11679_length_258_cov_6.788321:1-258 [pilon] Processing NODE_6317_length_516_cov_19.906329:1-516 [pilon] NODE_7160_length_462_cov_10.521994:1-462 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 90, Coverage: 6, minDepth: 5 [pilon] Confirmed 226 of 462 bases (48.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7160_length_462_cov_10.521994:1-462 [pilon] Processing NODE_4399_length_671_cov_20.532727:1-671 [pilon] NODE_13269_length_243_cov_20.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13269_length_243_cov_20.418033:1-243 [pilon] Processing NODE_10090_length_321_cov_23.575000:1-321 [pilon] NODE_9645_length_339_cov_28.155963:1-339 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 148, Coverage: 18, minDepth: 5 [pilon] Confirmed 263 of 339 bases (77.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9645_length_339_cov_28.155963:1-339 [pilon] Processing NODE_3993_length_716_cov_2.591597:1-716 [pilon] NODE_2217_length_1029_cov_22.463656:1-1029 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 538, Coverage: 35, minDepth: 9 [pilon] Confirmed 901 of 1029 bases (87.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2217_length_1029_cov_22.463656:1-1029 [pilon] Processing NODE_6454_length_507_cov_7.062176:1-507 [pilon] NODE_11152_length_277_cov_20.557692:1-277 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 72, Coverage: 8, minDepth: 5 [pilon] Confirmed 202 of 277 bases (72.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11152_length_277_cov_20.557692:1-277 [pilon] Processing NODE_5669_length_565_cov_25.727477:1-565 [pilon] NODE_12426_length_243_cov_30.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12426_length_243_cov_30.401639:1-243 [pilon] Processing NODE_14476_length_243_cov_10.434426:1-243 [pilon] NODE_1202_length_1397_cov_3.409875:1-1397 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 91, Coverage: 8, minDepth: 5 [pilon] Confirmed 695 of 1397 bases (49.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1202_length_1397_cov_3.409875:1-1397 [pilon] Processing NODE_11108_length_279_cov_19.670886:1-279 [pilon] NODE_1120_length_1430_cov_20.864782:1-1430 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 639, Coverage: 36, minDepth: 9 [pilon] Confirmed 1109 of 1430 bases (77.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1120_length_1430_cov_20.864782:1-1430 [pilon] Processing NODE_1326_length_1331_cov_3.566942:1-1331 [pilon] NODE_2434_length_981_cov_26.140698:1-981 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 587, Coverage: 49, minDepth: 12 [pilon] Confirmed 773 of 981 bases (78.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2434_length_981_cov_26.140698:1-981 [pilon] Processing NODE_12006_length_246_cov_17.008000:1-246 [pilon] NODE_1997_length_1087_cov_31.621118:1-1087 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 735, Coverage: 70, minDepth: 18 [pilon] Confirmed 913 of 1087 bases (83.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1997_length_1087_cov_31.621118:1-1087 [pilon] Processing NODE_10098_length_321_cov_19.685000:1-321 [pilon] NODE_4789_length_636_cov_1.365049:1-636 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 275 of 636 bases (43.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4789_length_636_cov_1.365049:1-636 [pilon] Processing NODE_6879_length_479_cov_11.706704:1-479 [pilon] NODE_13018_length_243_cov_22.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13018_length_243_cov_22.754098:1-243 [pilon] Processing NODE_7005_length_471_cov_2.971429:1-471 [pilon] NODE_3952_length_721_cov_1.716667:1-721 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 29, Coverage: 5, minDepth: 5 [pilon] Confirmed 323 of 721 bases (44.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3952_length_721_cov_1.716667:1-721 [pilon] Processing NODE_14284_length_243_cov_11.959016:1-243 [pilon] NODE_8257_length_406_cov_7.849123:1-406 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 48, Coverage: 11, minDepth: 5 [pilon] Confirmed 340 of 406 bases (83.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8257_length_406_cov_7.849123:1-406 [pilon] Processing NODE_7459_length_445_cov_21.111111:1-445 [pilon] NODE_3594_length_770_cov_8.768875:1-770 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 147, Coverage: 14, minDepth: 5 [pilon] Confirmed 643 of 770 bases (83.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3594_length_770_cov_8.768875:1-770 [pilon] Processing NODE_11219_length_275_cov_21.558442:1-275 [pilon] NODE_13415_length_243_cov_19.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13415_length_243_cov_19.147541:1-243 [pilon] Processing NODE_11185_length_276_cov_19.258065:1-276 [pilon] NODE_7981_length_419_cov_11.134228:1-419 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 81, Coverage: 13, minDepth: 5 [pilon] Confirmed 337 of 419 bases (80.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7981_length_419_cov_11.134228:1-419 [pilon] Processing NODE_9885_length_330_cov_25.368421:1-330 [pilon] NODE_479_length_1931_cov_17.665193:1-1931 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 836, Coverage: 50, minDepth: 13 [pilon] Confirmed 1586 of 1931 bases (82.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_479_length_1931_cov_17.665193:1-1931 [pilon] Processing NODE_3782_length_743_cov_4.737942:1-743 [pilon] NODE_2958_length_881_cov_2.705263:1-881 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 62, Coverage: 5, minDepth: 5 [pilon] Confirmed 387 of 881 bases (43.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2958_length_881_cov_2.705263:1-881 [pilon] Processing NODE_6681_length_492_cov_9.274933:1-492 [pilon] NODE_10378_length_309_cov_28.101064:1-309 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 109, Coverage: 13, minDepth: 5 [pilon] Confirmed 235 of 309 bases (76.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10378_length_309_cov_28.101064:1-309 [pilon] Processing NODE_14205_length_243_cov_12.573770:1-243 [pilon] NODE_14357_length_243_cov_11.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14357_length_243_cov_11.393443:1-243 [pilon] Processing NODE_1071_length_1455_cov_17.686657:1-1455 [pilon] NODE_8951_length_369_cov_9.810484:1-369 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 81, Coverage: 12, minDepth: 5 [pilon] Confirmed 222 of 369 bases (60.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8951_length_369_cov_9.810484:1-369 [pilon] Processing NODE_9726_length_336_cov_43.967442:1-336 [pilon] NODE_2704_length_929_cov_1.230198:1-929 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 37, Coverage: 5, minDepth: 5 [pilon] Confirmed 346 of 929 bases (37.24%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2704_length_929_cov_1.230198:1-929 [pilon] Processing NODE_1576_length_1228_cov_13.928636:1-1228 [pilon] NODE_15175_length_174_cov_5.377358:1-174 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 174 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15175_length_174_cov_5.377358:1-174 [pilon] Processing NODE_3659_length_760_cov_18.533646:1-760 [pilon] NODE_12965_length_243_cov_23.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12965_length_243_cov_23.319672:1-243 [pilon] Processing NODE_1358_length_1316_cov_2.278661:1-1316 [pilon] NODE_11108_length_279_cov_19.670886:1-279 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 76, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 279 bases (46.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11108_length_279_cov_19.670886:1-279 [pilon] Processing NODE_12691_length_243_cov_26.360656:1-243 [pilon] NODE_10090_length_321_cov_23.575000:1-321 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 97, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 321 bases (40.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10090_length_321_cov_23.575000:1-321 [pilon] Processing NODE_1759_length_1158_cov_6.791707:1-1158 [pilon] NODE_4399_length_671_cov_20.532727:1-671 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 355, Coverage: 41, minDepth: 10 [pilon] Confirmed 386 of 671 bases (57.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4399_length_671_cov_20.532727:1-671 [pilon] Processing NODE_7462_length_445_cov_6.250000:1-445 [pilon] NODE_2356_length_1000_cov_1.952218:1-1000 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 61, Coverage: 8, minDepth: 5 [pilon] Confirmed 724 of 1000 bases (72.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2356_length_1000_cov_1.952218:1-1000 [pilon] Processing NODE_1082_length_1450_cov_28.913469:1-1450 [pilon] NODE_6317_length_516_cov_19.906329:1-516 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 178, Coverage: 16, minDepth: 5 [pilon] Confirmed 308 of 516 bases (59.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6317_length_516_cov_19.906329:1-516 [pilon] Processing NODE_5360_length_587_cov_27.841202:1-587 [pilon] NODE_1326_length_1331_cov_3.566942:1-1331 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 106, Coverage: 10, minDepth: 5 [pilon] Confirmed 1007 of 1331 bases (75.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1326_length_1331_cov_3.566942:1-1331 [pilon] Processing NODE_11696_length_256_cov_12.903704:1-256 [pilon] NODE_6454_length_507_cov_7.062176:1-507 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 67, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 507 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6454_length_507_cov_7.062176:1-507 [pilon] Processing NODE_15197_length_160_cov_46.102564:1-160 [pilon] NODE_3993_length_716_cov_2.591597:1-716 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 47, Coverage: 8, minDepth: 5 [pilon] Confirmed 483 of 716 bases (67.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3993_length_716_cov_2.591597:1-716 [pilon] Processing NODE_6109_length_531_cov_18.448780:1-531 [pilon] NODE_5669_length_565_cov_25.727477:1-565 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 269, Coverage: 31, minDepth: 8 [pilon] Confirmed 466 of 565 bases (82.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5669_length_565_cov_25.727477:1-565 [pilon] Processing NODE_14407_length_243_cov_11.024590:1-243 [pilon] NODE_14476_length_243_cov_10.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14476_length_243_cov_10.434426:1-243 [pilon] Processing NODE_14416_length_243_cov_10.926230:1-243 [pilon] NODE_12006_length_246_cov_17.008000:1-246 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 34, Coverage: 4, minDepth: 5 [pilon] Confirmed 128 of 246 bases (52.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12006_length_246_cov_17.008000:1-246 [pilon] Processing NODE_671_length_1727_cov_17.063512:1-1727 [pilon] NODE_6879_length_479_cov_11.706704:1-479 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 88, Coverage: 14, minDepth: 5 [pilon] Confirmed 288 of 479 bases (60.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6879_length_479_cov_11.706704:1-479 [pilon] Processing NODE_6157_length_528_cov_2.265356:1-528 [pilon] NODE_10098_length_321_cov_19.685000:1-321 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 99, Coverage: 6, minDepth: 5 [pilon] Confirmed 241 of 321 bases (75.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10098_length_321_cov_19.685000:1-321 [pilon] Processing NODE_13028_length_243_cov_22.647541:1-243 [pilon] NODE_7459_length_445_cov_21.111111:1-445 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 157, Coverage: 30, minDepth: 8 [pilon] Confirmed 381 of 445 bases (85.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7459_length_445_cov_21.111111:1-445 [pilon] Processing NODE_9362_length_351_cov_24.617391:1-351 [pilon] NODE_7005_length_471_cov_2.971429:1-471 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 25, Coverage: 6, minDepth: 5 [pilon] Confirmed 303 of 471 bases (64.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7005_length_471_cov_2.971429:1-471 [pilon] Processing NODE_9119_length_360_cov_26.464435:1-360 [pilon] NODE_11219_length_275_cov_21.558442:1-275 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 74, Coverage: 2, minDepth: 5 [pilon] Confirmed 39 of 275 bases (14.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11219_length_275_cov_21.558442:1-275 [pilon] Processing NODE_1184_length_1406_cov_8.986770:1-1406 [pilon] NODE_14284_length_243_cov_11.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14284_length_243_cov_11.959016:1-243 [pilon] Processing NODE_14544_length_243_cov_9.934426:1-243 [pilon] NODE_11185_length_276_cov_19.258065:1-276 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 60, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11185_length_276_cov_19.258065:1-276 [pilon] Processing NODE_5405_length_584_cov_1.593952:1-584 [pilon] NODE_9885_length_330_cov_25.368421:1-330 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 106, Coverage: 16, minDepth: 5 [pilon] Confirmed 263 of 330 bases (79.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9885_length_330_cov_25.368421:1-330 [pilon] Processing NODE_2763_length_915_cov_21.423174:1-915 [pilon] NODE_1759_length_1158_cov_6.791707:1-1158 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 276, Coverage: 28, minDepth: 7 [pilon] Confirmed 836 of 1158 bases (72.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1759_length_1158_cov_6.791707:1-1158 [pilon] Processing NODE_10687_length_298_cov_25.197740:1-298 [pilon] NODE_6681_length_492_cov_9.274933:1-492 log: [pilon] NODE_3782_length_743_cov_4.737942:1-743 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 68, Coverage: 12, minDepth: 5 [pilon] Confirmed 513 of 743 bases (69.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3782_length_743_cov_4.737942:1-743 [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 70, Coverage: 9, minDepth: 5 [pilon] Confirmed 300 of 492 bases (60.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6681_length_492_cov_9.274933:1-492 [pilon] Processing NODE_3384_length_800_cov_3.354934:1-800 [pilon] Processing NODE_3439_length_793_cov_8.994048:1-793 [pilon] NODE_12691_length_243_cov_26.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12691_length_243_cov_26.360656:1-243 [pilon] Processing NODE_14038_length_243_cov_13.918033:1-243 [pilon] NODE_14205_length_243_cov_12.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14205_length_243_cov_12.573770:1-243 [pilon] Processing NODE_632_length_1770_cov_14.775622:1-1770 [pilon] NODE_1576_length_1228_cov_13.928636:1-1228 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 458, Coverage: 42, minDepth: 11 [pilon] Confirmed 975 of 1228 bases (79.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1576_length_1228_cov_13.928636:1-1228 [pilon] Processing NODE_3278_length_819_cov_1.497135:1-819 [pilon] NODE_9726_length_336_cov_43.967442:1-336 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 235, Coverage: 41, minDepth: 10 [pilon] Confirmed 308 of 336 bases (91.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9726_length_336_cov_43.967442:1-336 [pilon] Processing NODE_5539_length_574_cov_58.825607:1-574 [pilon] NODE_1358_length_1316_cov_2.278661:1-1316 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 80, Coverage: 7, minDepth: 5 [pilon] Confirmed 602 of 1316 bases (45.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1358_length_1316_cov_2.278661:1-1316 [pilon] Processing NODE_8823_length_375_cov_31.661417:1-375 [pilon] NODE_1071_length_1455_cov_17.686657:1-1455 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 550, Coverage: 49, minDepth: 12 [pilon] Confirmed 1094 of 1455 bases (75.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1071_length_1455_cov_17.686657:1-1455 [pilon] Processing NODE_13532_length_243_cov_18.057377:1-243 [pilon] NODE_13028_length_243_cov_22.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13028_length_243_cov_22.647541:1-243 [pilon] Processing NODE_6056_length_535_cov_24.625604:1-535 [pilon] NODE_7462_length_445_cov_6.250000:1-445 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 57, Coverage: 3, minDepth: 5 [pilon] Confirmed 67 of 445 bases (15.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7462_length_445_cov_6.250000:1-445 [pilon] Processing NODE_5792_length_556_cov_1.039080:1-556 [pilon] NODE_3659_length_760_cov_18.533646:1-760 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 285, Coverage: 33, minDepth: 8 [pilon] Confirmed 535 of 760 bases (70.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3659_length_760_cov_18.533646:1-760 [pilon] Processing NODE_9435_length_348_cov_22.841410:1-348 [pilon] NODE_11696_length_256_cov_12.903704:1-256 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 29, Coverage: 3, minDepth: 5 [pilon] Confirmed 39 of 256 bases (15.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11696_length_256_cov_12.903704:1-256 [pilon] Processing NODE_11269_length_273_cov_14.848684:1-273 [pilon] NODE_9362_length_351_cov_24.617391:1-351 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 112, Coverage: 16, minDepth: 5 [pilon] Confirmed 240 of 351 bases (68.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9362_length_351_cov_24.617391:1-351 [pilon] Processing NODE_3417_length_796_cov_12.840000:1-796 [pilon] NODE_15197_length_160_cov_46.102564:1-160 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 160 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15197_length_160_cov_46.102564:1-160 [pilon] Processing NODE_3202_length_832_cov_24.625879:1-832 [pilon] NODE_1082_length_1450_cov_28.913469:1-1450 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 840, Coverage: 69, minDepth: 17 [pilon] Confirmed 1147 of 1450 bases (79.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1082_length_1450_cov_28.913469:1-1450 [pilon] Processing NODE_6838_length_481_cov_9.500000:1-481 [pilon] NODE_14416_length_243_cov_10.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14416_length_243_cov_10.926230:1-243 [pilon] Processing NODE_4026_length_713_cov_4.589527:1-713 [pilon] NODE_14407_length_243_cov_11.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14407_length_243_cov_11.024590:1-243 [pilon] Processing NODE_11445_length_265_cov_14.152778:1-265 [pilon] NODE_5360_length_587_cov_27.841202:1-587 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 305, Coverage: 38, minDepth: 10 [pilon] Confirmed 522 of 587 bases (88.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5360_length_587_cov_27.841202:1-587 [pilon] Processing NODE_8926_length_369_cov_31.895161:1-369 [pilon] NODE_6109_length_531_cov_18.448780:1-531 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 194, Coverage: 5, minDepth: 5 [pilon] Confirmed 170 of 531 bases (32.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6109_length_531_cov_18.448780:1-531 [pilon] Processing NODE_5955_length_544_cov_16.666667:1-544 [pilon] NODE_14544_length_243_cov_9.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14544_length_243_cov_9.934426:1-243 [pilon] Processing NODE_5999_length_541_cov_0.947619:1-541 [pilon] NODE_671_length_1727_cov_17.063512:1-1727 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 700, Coverage: 44, minDepth: 11 [pilon] Confirmed 1434 of 1727 bases (83.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_671_length_1727_cov_17.063512:1-1727 [pilon] Processing NODE_6267_length_520_cov_2.170426:1-520 [pilon] NODE_6157_length_528_cov_2.265356:1-528 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 385 of 528 bases (72.92%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6157_length_528_cov_2.265356:1-528 [pilon] Processing NODE_7880_length_423_cov_33.374172:1-423 [pilon] NODE_9119_length_360_cov_26.464435:1-360 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 119, Coverage: 13, minDepth: 5 [pilon] Confirmed 207 of 360 bases (57.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9119_length_360_cov_26.464435:1-360 [pilon] Processing NODE_9931_length_328_cov_28.763285:1-328 [pilon] NODE_14038_length_243_cov_13.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14038_length_243_cov_13.918033:1-243 [pilon] Processing NODE_7403_length_448_cov_1.324159:1-448 [pilon] NODE_3439_length_793_cov_8.994048:1-793 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 156, Coverage: 22, minDepth: 6 [pilon] Confirmed 728 of 793 bases (91.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3439_length_793_cov_8.994048:1-793 [pilon] Processing NODE_10093_length_321_cov_22.215000:1-321 [pilon] NODE_1184_length_1406_cov_8.986770:1-1406 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 334, Coverage: 25, minDepth: 6 [pilon] Confirmed 1189 of 1406 bases (84.57%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1184_length_1406_cov_8.986770:1-1406 [pilon] Processing NODE_14306_length_243_cov_11.795082:1-243 [pilon] NODE_5405_length_584_cov_1.593952:1-584 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 288 of 584 bases (49.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5405_length_584_cov_1.593952:1-584 [pilon] Processing NODE_14217_length_243_cov_12.467213:1-243 [pilon] NODE_10687_length_298_cov_25.197740:1-298 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 96, Coverage: 6, minDepth: 5 [pilon] Confirmed 181 of 298 bases (60.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10687_length_298_cov_25.197740:1-298 [pilon] Processing NODE_11391_length_267_cov_25.041096:1-267 [pilon] NODE_6056_length_535_cov_24.625604:1-535 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 248, Coverage: 36, minDepth: 9 [pilon] Confirmed 444 of 535 bases (82.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6056_length_535_cov_24.625604:1-535 [pilon] Processing NODE_14121_length_243_cov_13.327869:1-243 [pilon] NODE_3417_length_796_cov_12.840000:1-796 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 185, Coverage: 24, minDepth: 6 [pilon] Confirmed 607 of 796 bases (76.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3417_length_796_cov_12.840000:1-796 [pilon] Processing NODE_2074_length_1066_cov_2.270899:1-1066 [pilon] NODE_2763_length_915_cov_21.423174:1-915 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 436, Coverage: 33, minDepth: 8 [pilon] Confirmed 703 of 915 bases (76.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2763_length_915_cov_21.423174:1-915 [pilon] Processing NODE_9302_length_354_cov_14.995708:1-354 [pilon] NODE_8926_length_369_cov_31.895161:1-369 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 180, Coverage: 20, minDepth: 5 [pilon] Confirmed 253 of 369 bases (68.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_5792_length_556_cov_1.039080:1-556 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 556 bases (23.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5792_length_556_cov_1.039080:1-556 [pilon] NODE_11269_length_273_cov_14.848684:1-273 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 57, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11269_length_273_cov_14.848684:1-273 [pilon] Processing NODE_3446_length_792_cov_4.573770:1-792 [pilon] Finished processing NODE_8926_length_369_cov_31.895161:1-369 [pilon] Processing NODE_11750_length_255_cov_17.365672:1-255 [pilon] Processing NODE_90_length_3099_cov_22.781061:1-3099 [pilon] NODE_3278_length_819_cov_1.497135:1-819 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 30, Coverage: 4, minDepth: 5 [pilon] Confirmed 439 of 819 bases (53.60%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3278_length_819_cov_1.497135:1-819 [pilon] Processing NODE_8727_length_381_cov_13.011538:1-381 [pilon] NODE_3384_length_800_cov_3.354934:1-800 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 61, Coverage: 10, minDepth: 5 [pilon] Confirmed 673 of 800 bases (84.13%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3384_length_800_cov_3.354934:1-800 [pilon] Processing NODE_1672_length_1191_cov_22.377570:1-1191 [pilon] NODE_632_length_1770_cov_14.775622:1-1770 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 592, Coverage: 29, minDepth: 7 [pilon] Confirmed 1703 of 1770 bases (96.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_632_length_1770_cov_14.775622:1-1770 [pilon] Processing NODE_7371_length_450_cov_9.155015:1-450 [pilon] NODE_5539_length_574_cov_58.825607:1-574 log: [pilon] frags shovill.bam: coverage 92 [pilon] Total Reads: 591, Coverage: 92, minDepth: 23 [pilon] Confirmed 491 of 574 bases (85.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5539_length_574_cov_58.825607:1-574 [pilon] Processing NODE_397_length_2052_cov_6.319006:1-2052 [pilon] NODE_8823_length_375_cov_31.661417:1-375 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 179, Coverage: 31, minDepth: 8 [pilon] Confirmed 343 of 375 bases (91.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8823_length_375_cov_31.661417:1-375 [pilon] Processing NODE_6361_length_513_cov_3.992347:1-513 [pilon] NODE_13532_length_243_cov_18.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13532_length_243_cov_18.057377:1-243 [pilon] Processing NODE_14833_length_243_cov_7.385246:1-243 [pilon] NODE_9435_length_348_cov_22.841410:1-348 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 76, Coverage: 3, minDepth: 5 [pilon] Confirmed 128 of 348 bases (36.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9435_length_348_cov_22.841410:1-348 [pilon] Processing NODE_14285_length_243_cov_11.959016:1-243 [pilon] NODE_6267_length_520_cov_2.170426:1-520 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 32, Coverage: 6, minDepth: 5 [pilon] Confirmed 280 of 520 bases (53.85%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6267_length_520_cov_2.170426:1-520 [pilon] Processing NODE_13164_length_243_cov_21.393443:1-243 [pilon] NODE_6838_length_481_cov_9.500000:1-481 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 77, Coverage: 6, minDepth: 5 [pilon] Confirmed 239 of 481 bases (49.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6838_length_481_cov_9.500000:1-481 [pilon] Processing NODE_815_length_1620_cov_3.053369:1-1620 [pilon] NODE_11445_length_265_cov_14.152778:1-265 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 56, Coverage: 3, minDepth: 5 [pilon] Confirmed 71 of 265 bases (26.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11445_length_265_cov_14.152778:1-265 [pilon] Processing NODE_13719_length_243_cov_16.254098:1-243 [pilon] NODE_10093_length_321_cov_22.215000:1-321 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 93, Coverage: 6, minDepth: 5 [pilon] Confirmed 149 of 321 bases (46.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10093_length_321_cov_22.215000:1-321 [pilon] Processing NODE_4262_length_686_cov_40.927434:1-686 [pilon] NODE_4026_length_713_cov_4.589527:1-713 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 67, Coverage: 12, minDepth: 5 [pilon] Confirmed 460 of 713 bases (64.52%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4026_length_713_cov_4.589527:1-713 [pilon] Processing NODE_4206_length_693_cov_27.173077:1-693 [pilon] NODE_5955_length_544_cov_16.666667:1-544 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 158, Coverage: 18, minDepth: 5 [pilon] Confirmed 390 of 544 bases (71.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5955_length_544_cov_16.666667:1-544 [pilon] Processing NODE_11609_length_260_cov_1.856115:1-260 [pilon] NODE_3202_length_832_cov_24.625879:1-832 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 465, Coverage: 56, minDepth: 14 [pilon] Confirmed 613 of 832 bases (73.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3202_length_832_cov_24.625879:1-832 [pilon] Processing NODE_2111_length_1056_cov_16.763636:1-1056 [pilon] NODE_5999_length_541_cov_0.947619:1-541 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 158 of 541 bases (29.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5999_length_541_cov_0.947619:1-541 [pilon] Processing NODE_8692_length_382_cov_54.613027:1-382 [pilon] NODE_7403_length_448_cov_1.324159:1-448 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 107 of 448 bases (23.88%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7403_length_448_cov_1.324159:1-448 [pilon] Processing NODE_11572_length_261_cov_22.521429:1-261 [pilon] NODE_7880_length_423_cov_33.374172:1-423 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 230, Coverage: 42, minDepth: 11 [pilon] Confirmed 338 of 423 bases (79.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7880_length_423_cov_33.374172:1-423 [pilon] Processing NODE_8430_length_398_cov_19.292419:1-398 [pilon] NODE_9931_length_328_cov_28.763285:1-328 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 121, Coverage: 10, minDepth: 5 [pilon] Confirmed 169 of 328 bases (51.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9931_length_328_cov_28.763285:1-328 [pilon] Processing NODE_11990_length_246_cov_22.392000:1-246 [pilon] NODE_14121_length_243_cov_13.327869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14121_length_243_cov_13.327869:1-243 [pilon] Processing NODE_478_length_1936_cov_34.634160:1-1936 [pilon] NODE_14306_length_243_cov_11.795082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14306_length_243_cov_11.795082:1-243 [pilon] Processing NODE_2022_length_1081_cov_2.157292:1-1081 [pilon] NODE_14217_length_243_cov_12.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14217_length_243_cov_12.467213:1-243 [pilon] Processing NODE_178_length_2572_cov_2.940024:1-2572 [pilon] NODE_11391_length_267_cov_25.041096:1-267 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 78, Coverage: 7, minDepth: 5 [pilon] Confirmed 180 of 267 bases (67.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11391_length_267_cov_25.041096:1-267 [pilon] Processing NODE_7408_length_447_cov_32.162577:1-447 [pilon] NODE_14833_length_243_cov_7.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14833_length_243_cov_7.385246:1-243 [pilon] Processing NODE_8739_length_380_cov_58.810811:1-380 [pilon] NODE_90_length_3099_cov_22.781061:1-3099 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 1628, Coverage: 60, minDepth: 15 [pilon] Confirmed 1741 of 3099 bases (56.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_90_length_3099_cov_22.781061:1-3099 [pilon] Processing NODE_788_length_1630_cov_29.630881:1-1630 [pilon] NODE_13164_length_243_cov_21.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13164_length_243_cov_21.393443:1-243 [pilon] Processing NODE_14735_length_243_cov_8.262295:1-243 [pilon] NODE_8727_length_381_cov_13.011538:1-381 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 74, Coverage: 7, minDepth: 5 [pilon] Confirmed 230 of 381 bases (60.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8727_length_381_cov_13.011538:1-381 [pilon] Processing NODE_10309_length_312_cov_33.094241:1-312 [pilon] NODE_9302_length_354_cov_14.995708:1-354 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 79, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 354 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9302_length_354_cov_14.995708:1-354 [pilon] Processing NODE_14678_length_243_cov_8.745902:1-243 [pilon] NODE_4262_length_686_cov_40.927434:1-686 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 557, Coverage: 51, minDepth: 13 [pilon] Confirmed 578 of 686 bases (84.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4262_length_686_cov_40.927434:1-686 [pilon] Processing NODE_11520_length_263_cov_15.267606:1-263 [pilon] NODE_2074_length_1066_cov_2.270899:1-1066 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 632 of 1066 bases (59.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2074_length_1066_cov_2.270899:1-1066 [pilon] Processing NODE_11652_length_258_cov_14.145985:1-258 [pilon] NODE_11750_length_255_cov_17.365672:1-255 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 54, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 255 bases (50.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11750_length_255_cov_17.365672:1-255 [pilon] Processing NODE_4093_length_706_cov_3.128205:1-706 [pilon] NODE_14285_length_243_cov_11.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14285_length_243_cov_11.959016:1-243 [pilon] Processing NODE_1583_length_1225_cov_29.239130:1-1225 [pilon] NODE_1672_length_1191_cov_22.377570:1-1191 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 621, Coverage: 40, minDepth: 10 [pilon] Confirmed 932 of 1191 bases (78.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1672_length_1191_cov_22.377570:1-1191 [pilon] Processing NODE_10488_length_305_cov_29.005435:1-305 [pilon] NODE_6361_length_513_cov_3.992347:1-513 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 40, Coverage: 10, minDepth: 5 [pilon] Confirmed 375 of 513 bases (73.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6361_length_513_cov_3.992347:1-513 [pilon] Processing NODE_9371_length_351_cov_20.091304:1-351 [pilon] NODE_3446_length_792_cov_4.573770:1-792 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 121, Coverage: 9, minDepth: 5 [pilon] Confirmed 554 of 792 bases (69.95%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3446_length_792_cov_4.573770:1-792 [pilon] Processing NODE_6759_length_486_cov_0.819178:1-486 [pilon] NODE_7371_length_450_cov_9.155015:1-450 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 292 of 450 bases (64.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7371_length_450_cov_9.155015:1-450 [pilon] Processing NODE_2064_length_1069_cov_2.187764:1-1069 [pilon] NODE_397_length_2052_cov_6.319006:1-2052 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 288, Coverage: 18, minDepth: 5 [pilon] Confirmed 1690 of 2052 bases (82.36%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_397_length_2052_cov_6.319006:1-2052 [pilon] Processing NODE_3648_length_762_cov_6.277691:1-762 [pilon] NODE_13719_length_243_cov_16.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13719_length_243_cov_16.254098:1-243 [pilon] Processing NODE_14622_length_243_cov_9.237705:1-243 [pilon] NODE_815_length_1620_cov_3.053369:1-1620 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 118, Coverage: 9, minDepth: 5 [pilon] Confirmed 1082 of 1620 bases (66.79%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_815_length_1620_cov_3.053369:1-1620 [pilon] Processing NODE_8544_length_391_cov_46.529630:1-391 [pilon] NODE_11609_length_260_cov_1.856115:1-260 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 260 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11609_length_260_cov_1.856115:1-260 [pilon] Processing NODE_6798_length_483_cov_18.013812:1-483 [pilon] NODE_2111_length_1056_cov_16.763636:1-1056 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 401, Coverage: 30, minDepth: 8 [pilon] Confirmed 930 of 1056 bases (88.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2111_length_1056_cov_16.763636:1-1056 [pilon] Processing NODE_11256_length_273_cov_19.763158:1-273 [pilon] NODE_8692_length_382_cov_54.613027:1-382 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 309, Coverage: 60, minDepth: 15 [pilon] Confirmed 344 of 382 bases (90.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8692_length_382_cov_54.613027:1-382 [pilon] Processing NODE_9610_length_341_cov_75.368182:1-341 [pilon] NODE_4206_length_693_cov_27.173077:1-693 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 349, Coverage: 42, minDepth: 11 [pilon] Confirmed 421 of 693 bases (60.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4206_length_693_cov_27.173077:1-693 [pilon] Processing NODE_5264_length_596_cov_0.545263:1-596 [pilon] NODE_478_length_1936_cov_34.634160:1-1936 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 1658, Coverage: 64, minDepth: 16 [pilon] Confirmed 1547 of 1936 bases (79.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_478_length_1936_cov_34.634160:1-1936 [pilon] Processing NODE_6890_length_478_cov_2.761905:1-478 [pilon] NODE_11572_length_261_cov_22.521429:1-261 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 69, Coverage: 8, minDepth: 5 [pilon] Confirmed 179 of 261 bases (68.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11572_length_261_cov_22.521429:1-261 [pilon] Processing NODE_4137_length_700_cov_1.737478:1-700 [pilon] NODE_8430_length_398_cov_19.292419:1-398 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 131, Coverage: 17, minDepth: 5 [pilon] Confirmed 281 of 398 bases (70.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8430_length_398_cov_19.292419:1-398 [pilon] Processing NODE_7479_length_444_cov_15.904025:1-444 [pilon] NODE_8739_length_380_cov_58.810811:1-380 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 384, Coverage: 63, minDepth: 16 [pilon] Confirmed 343 of 380 bases (90.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8739_length_380_cov_58.810811:1-380 [pilon] Processing NODE_2289_length_1014_cov_2.900336:1-1014 [pilon] NODE_11990_length_246_cov_22.392000:1-246 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 53, Coverage: 5, minDepth: 5 [pilon] Confirmed 164 of 246 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11990_length_246_cov_22.392000:1-246 [pilon] Processing NODE_15194_length_161_cov_53.050000:1-161 [pilon] NODE_14735_length_243_cov_8.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14735_length_243_cov_8.262295:1-243 [pilon] Processing NODE_9801_length_334_cov_9.211268:1-334 [pilon] NODE_2022_length_1081_cov_2.157292:1-1081 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 60, Coverage: 7, minDepth: 5 [pilon] Confirmed 712 of 1081 bases (65.86%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2022_length_1081_cov_2.157292:1-1081 [pilon] Processing NODE_6013_length_540_cov_5.694511:1-540 [pilon] NODE_11520_length_263_cov_15.267606:1-263 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 50, Coverage: 3, minDepth: 5 [pilon] Confirmed 57 of 263 bases (21.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11520_length_263_cov_15.267606:1-263 [pilon] Processing NODE_14221_length_243_cov_12.401639:1-243 [pilon] NODE_788_length_1630_cov_29.630881:1-1630 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 1051, Coverage: 71, minDepth: 18 [pilon] Confirmed 1401 of 1630 bases (85.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_788_length_1630_cov_29.630881:1-1630 [pilon] Processing NODE_3333_length_809_cov_22.156977:1-809 [pilon] NODE_178_length_2572_cov_2.940024:1-2572 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 214, Coverage: 11, minDepth: 5 [pilon] Confirmed 2321 of 2572 bases (90.24%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_178_length_2572_cov_2.940024:1-2572 [pilon] Processing NODE_3986_length_716_cov_15.265546:1-716 [pilon] NODE_7408_length_447_cov_32.162577:1-447 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 232, Coverage: 33, minDepth: 8 [pilon] Confirmed 312 of 447 bases (69.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7408_length_447_cov_32.162577:1-447 [pilon] Processing NODE_5980_length_542_cov_35.353919:1-542 [pilon] NODE_11652_length_258_cov_14.145985:1-258 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 49, Coverage: 3, minDepth: 5 [pilon] Confirmed 27 of 258 bases (10.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11652_length_258_cov_14.145985:1-258 [pilon] Processing NODE_9053_length_363_cov_30.078512:1-363 [pilon] NODE_10309_length_312_cov_33.094241:1-312 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 144, Coverage: 18, minDepth: 5 [pilon] Confirmed 271 of 312 bases (86.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10309_length_312_cov_33.094241:1-312 [pilon] Processing NODE_12157_length_243_cov_38.918033:1-243 [pilon] NODE_4093_length_706_cov_3.128205:1-706 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 43, Coverage: 8, minDepth: 5 [pilon] Confirmed 514 of 706 bases (72.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4093_length_706_cov_3.128205:1-706 [pilon] Processing NODE_14959_length_243_cov_5.991803:1-243 [pilon] NODE_14678_length_243_cov_8.745902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14678_length_243_cov_8.745902:1-243 [pilon] Processing NODE_5883_length_549_cov_15.394860:1-549 [pilon] NODE_6890_length_478_cov_2.761905:1-478 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 33, Coverage: 8, minDepth: 5 [pilon] Confirmed 278 of 478 bases (58.16%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6890_length_478_cov_2.761905:1-478 [pilon] Processing NODE_736_length_1675_cov_2.003218:1-1675 [pilon] NODE_6759_length_486_cov_0.819178:1-486 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 229 of 486 bases (47.12%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6759_length_486_cov_0.819178:1-486 [pilon] Processing NODE_11170_length_276_cov_30.245161:1-276 [pilon] NODE_9371_length_351_cov_20.091304:1-351 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 101, Coverage: 12, minDepth: 5 [pilon] Confirmed 216 of 351 bases (61.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9371_length_351_cov_20.091304:1-351 [pilon] Processing NODE_9654_length_339_cov_23.128440:1-339 [pilon] NODE_2064_length_1069_cov_2.187764:1-1069 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 53, Coverage: 6, minDepth: 5 [pilon] Confirmed 569 of 1069 bases (53.23%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2064_length_1069_cov_2.187764:1-1069 [pilon] Processing NODE_7884_length_423_cov_25.831126:1-423 [pilon] NODE_1583_length_1225_cov_29.239130:1-1225 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 828, Coverage: 53, minDepth: 13 [pilon] Confirmed 1006 of 1225 bases (82.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1583_length_1225_cov_29.239130:1-1225 [pilon] Processing NODE_1145_length_1421_cov_14.807692:1-1421 [pilon] NODE_14622_length_243_cov_9.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14622_length_243_cov_9.237705:1-243 [pilon] Processing NODE_2310_length_1008_cov_17.703495:1-1008 [pilon] NODE_10488_length_305_cov_29.005435:1-305 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 115, Coverage: 12, minDepth: 5 [pilon] Confirmed 230 of 305 bases (75.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10488_length_305_cov_29.005435:1-305 [pilon] Processing NODE_5262_length_596_cov_2.513684:1-596 [pilon] NODE_3648_length_762_cov_6.277691:1-762 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 95, Coverage: 16, minDepth: 5 [pilon] Confirmed 492 of 762 bases (64.57%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3648_length_762_cov_6.277691:1-762 [pilon] Processing NODE_10000_length_325_cov_21.936275:1-325 [pilon] NODE_8544_length_391_cov_46.529630:1-391 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 294, Coverage: 53, minDepth: 13 [pilon] Confirmed 344 of 391 bases (87.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8544_length_391_cov_46.529630:1-391 [pilon] Processing NODE_12429_length_243_cov_30.336066:1-243 [pilon] NODE_2289_length_1014_cov_2.900336:1-1014 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 75, Coverage: 9, minDepth: 5 [pilon] Confirmed 734 of 1014 bases (72.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2289_length_1014_cov_2.900336:1-1014 [pilon] Processing NODE_8828_length_375_cov_25.523622:1-375 [pilon] NODE_11256_length_273_cov_19.763158:1-273 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 66, Coverage: 4, minDepth: 5 [pilon] Confirmed 112 of 273 bases (41.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11256_length_273_cov_19.763158:1-273 [pilon] Processing NODE_9692_length_339_cov_6.325688:1-339 [pilon] NODE_6798_length_483_cov_18.013812:1-483 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 145, Coverage: 19, minDepth: 5 [pilon] Confirmed 317 of 483 bases (65.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6798_length_483_cov_18.013812:1-483 [pilon] Processing NODE_3936_length_723_cov_1.054817:1-723 [pilon] NODE_9801_length_334_cov_9.211268:1-334 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 64, Coverage: 4, minDepth: 5 [pilon] Confirmed 139 of 334 bases (41.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9801_length_334_cov_9.211268:1-334 [pilon] Processing NODE_14355_length_243_cov_11.409836:1-243 [pilon] NODE_5264_length_596_cov_0.545263:1-596 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 8, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 596 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5264_length_596_cov_0.545263:1-596 [pilon] Processing NODE_6511_length_503_cov_7.196335:1-503 [pilon] NODE_14221_length_243_cov_12.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14221_length_243_cov_12.401639:1-243 [pilon] Processing NODE_5600_length_570_cov_26.298441:1-570 [pilon] NODE_4137_length_700_cov_1.737478:1-700 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 44, Coverage: 7, minDepth: 5 [pilon] Confirmed 549 of 700 bases (78.43%) [pilon] Corrected 7 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4137_length_700_cov_1.737478:1-700 [pilon] Processing NODE_8206_length_408_cov_14.222997:1-408 [pilon] NODE_9610_length_341_cov_75.368182:1-341 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 370, Coverage: 56, minDepth: 14 [pilon] Confirmed 305 of 341 bases (89.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9610_length_341_cov_75.368182:1-341 [pilon] Processing NODE_2508_length_966_cov_13.840237:1-966 [pilon] NODE_3333_length_809_cov_22.156977:1-809 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 360, Coverage: 45, minDepth: 11 [pilon] Confirmed 604 of 809 bases (74.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3333_length_809_cov_22.156977:1-809 [pilon] Processing NODE_10039_length_324_cov_13.083744:1-324 [pilon] NODE_7479_length_444_cov_15.904025:1-444 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 123, Coverage: 13, minDepth: 5 [pilon] Confirmed 256 of 444 bases (57.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7479_length_444_cov_15.904025:1-444 [pilon] Processing NODE_12082_length_244_cov_20.048780:1-244 [pilon] NODE_15194_length_161_cov_53.050000:1-161 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 161 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15194_length_161_cov_53.050000:1-161 [pilon] Processing NODE_2031_length_1078_cov_11.035528:1-1078 [pilon] NODE_6013_length_540_cov_5.694511:1-540 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 60, Coverage: 11, minDepth: 5 [pilon] Confirmed 422 of 540 bases (78.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6013_length_540_cov_5.694511:1-540 [pilon] Processing NODE_3911_length_726_cov_3.849587:1-726 [pilon] NODE_3986_length_716_cov_15.265546:1-716 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 230, Coverage: 31, minDepth: 8 [pilon] Confirmed 570 of 716 bases (79.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3986_length_716_cov_15.265546:1-716 [pilon] Processing NODE_10442_length_306_cov_24.778378:1-306 [pilon] NODE_5980_length_542_cov_35.353919:1-542 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 383, Coverage: 50, minDepth: 13 [pilon] Confirmed 346 of 542 bases (63.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5980_length_542_cov_35.353919:1-542 [pilon] Processing NODE_3232_length_828_cov_0.864215:1-828 [pilon] NODE_5262_length_596_cov_2.513684:1-596 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 36, Coverage: 6, minDepth: 5 [pilon] Confirmed 260 of 596 bases (43.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5262_length_596_cov_2.513684:1-596 [pilon] Processing NODE_6896_length_477_cov_36.497191:1-477 [pilon] NODE_14959_length_243_cov_5.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14959_length_243_cov_5.991803:1-243 [pilon] Processing NODE_4173_length_696_cov_34.563478:1-696 [pilon] NODE_8828_length_375_cov_25.523622:1-375 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 154, Coverage: 14, minDepth: 5 [pilon] Confirmed 275 of 375 bases (73.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8828_length_375_cov_25.523622:1-375 [pilon] Processing NODE_9696_length_338_cov_44.695853:1-338 [pilon] NODE_9053_length_363_cov_30.078512:1-363 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 162, Coverage: 35, minDepth: 9 [pilon] Confirmed 331 of 363 bases (91.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9053_length_363_cov_30.078512:1-363 [pilon] Processing NODE_5268_length_595_cov_3.436709:1-595 [pilon] NODE_5883_length_549_cov_15.394860:1-549 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 138, Coverage: 20, minDepth: 5 [pilon] Confirmed 476 of 549 bases (86.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5883_length_549_cov_15.394860:1-549 [pilon] Processing NODE_9254_length_355_cov_39.000000:1-355 [pilon] NODE_12157_length_243_cov_38.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12157_length_243_cov_38.918033:1-243 [pilon] Processing NODE_430_length_1995_cov_15.535752:1-1995 [pilon] NODE_14355_length_243_cov_11.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14355_length_243_cov_11.409836:1-243 [pilon] Processing NODE_13296_length_243_cov_20.270492:1-243 [pilon] NODE_10000_length_325_cov_21.936275:1-325 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 100, Coverage: 17, minDepth: 5 [pilon] Confirmed 259 of 325 bases (79.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10000_length_325_cov_21.936275:1-325 [pilon] Processing NODE_3888_length_729_cov_55.652961:1-729 [pilon] NODE_736_length_1675_cov_2.003218:1-1675 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 98, Coverage: 8, minDepth: 5 [pilon] Confirmed 1083 of 1675 bases (64.66%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_736_length_1675_cov_2.003218:1-1675 [pilon] Processing NODE_4951_length_622_cov_19.431138:1-622 [pilon] NODE_5600_length_570_cov_26.298441:1-570 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 253, Coverage: 36, minDepth: 9 [pilon] Confirmed 433 of 570 bases (75.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5600_length_570_cov_26.298441:1-570 [pilon] Processing NODE_13529_length_243_cov_18.073770:1-243 [pilon] NODE_11170_length_276_cov_30.245161:1-276 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 94, Coverage: 9, minDepth: 5 [pilon] Confirmed 198 of 276 bases (71.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11170_length_276_cov_30.245161:1-276 [pilon] Processing NODE_5503_length_577_cov_2.660088:1-577 [pilon] NODE_9654_length_339_cov_23.128440:1-339 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 122, Coverage: 13, minDepth: 5 [pilon] Confirmed 240 of 339 bases (70.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9654_length_339_cov_23.128440:1-339 [pilon] Processing NODE_10224_length_316_cov_5.656410:1-316 [pilon] NODE_7884_length_423_cov_25.831126:1-423 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 206, Coverage: 16, minDepth: 5 [pilon] Confirmed 183 of 423 bases (43.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7884_length_423_cov_25.831126:1-423 [pilon] Processing NODE_6449_length_507_cov_11.689119:1-507 [pilon] NODE_12429_length_243_cov_30.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12429_length_243_cov_30.336066:1-243 [pilon] Processing NODE_11262_length_273_cov_18.092105:1-273 [pilon] NODE_1145_length_1421_cov_14.807692:1-1421 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 528, Coverage: 31, minDepth: 8 [pilon] Confirmed 1179 of 1421 bases (82.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1145_length_1421_cov_14.807692:1-1421 [pilon] NODE_2310_length_1008_cov_17.703495:1-1008 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 388, Coverage: 32, minDepth: 8 [pilon] Confirmed 685 of 1008 bases (67.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_1835_length_1133_cov_20.865613:1-1133 [pilon] Finished processing NODE_2310_length_1008_cov_17.703495:1-1008 [pilon] Processing NODE_10947_length_286_cov_5.951515:1-286 [pilon] NODE_3936_length_723_cov_1.054817:1-723 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 19, Coverage: 3, minDepth: 5 [pilon] Confirmed 179 of 723 bases (24.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3936_length_723_cov_1.054817:1-723 [pilon] Processing NODE_3342_length_806_cov_50.366423:1-806 [pilon] NODE_6511_length_503_cov_7.196335:1-503 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 70, Coverage: 7, minDepth: 5 [pilon] Confirmed 291 of 503 bases (57.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6511_length_503_cov_7.196335:1-503 [pilon] Processing NODE_3817_length_738_cov_27.016207:1-738 [pilon] NODE_9692_length_339_cov_6.325688:1-339 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 28, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 339 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9692_length_339_cov_6.325688:1-339 [pilon] Processing NODE_6067_length_534_cov_21.699758:1-534 [pilon] NODE_2508_length_966_cov_13.840237:1-966 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 269, Coverage: 36, minDepth: 9 [pilon] Confirmed 784 of 966 bases (81.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2508_length_966_cov_13.840237:1-966 [pilon] Processing NODE_8028_length_417_cov_17.266892:1-417 [pilon] NODE_8206_length_408_cov_14.222997:1-408 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 94, Coverage: 8, minDepth: 5 [pilon] Confirmed 220 of 408 bases (53.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8206_length_408_cov_14.222997:1-408 [pilon] Processing NODE_4645_length_648_cov_18.595825:1-648 [pilon] NODE_10039_length_324_cov_13.083744:1-324 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 65, Coverage: 3, minDepth: 5 [pilon] Confirmed 103 of 324 bases (31.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10039_length_324_cov_13.083744:1-324 [pilon] Processing NODE_5119_length_608_cov_32.593429:1-608 [pilon] NODE_2031_length_1078_cov_11.035528:1-1078 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 272, Coverage: 23, minDepth: 6 [pilon] Confirmed 908 of 1078 bases (84.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2031_length_1078_cov_11.035528:1-1078 [pilon] Processing NODE_3882_length_730_cov_10.817734:1-730 [pilon] NODE_12082_length_244_cov_20.048780:1-244 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 59, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12082_length_244_cov_20.048780:1-244 [pilon] Processing NODE_7543_length_441_cov_18.828125:1-441 [pilon] NODE_6896_length_477_cov_36.497191:1-477 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 327, Coverage: 27, minDepth: 7 [pilon] Confirmed 229 of 477 bases (48.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6896_length_477_cov_36.497191:1-477 [pilon] Processing NODE_9344_length_352_cov_21.995671:1-352 [pilon] NODE_3911_length_726_cov_3.849587:1-726 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 58, Coverage: 10, minDepth: 5 [pilon] Confirmed 616 of 726 bases (84.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3911_length_726_cov_3.849587:1-726 [pilon] Processing NODE_3809_length_739_cov_43.477346:1-739 [pilon] NODE_13529_length_243_cov_18.073770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13529_length_243_cov_18.073770:1-243 [pilon] Processing NODE_4374_length_673_cov_31.003623:1-673 [pilon] NODE_10442_length_306_cov_24.778378:1-306 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 100, Coverage: 14, minDepth: 5 [pilon] Confirmed 253 of 306 bases (82.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10442_length_306_cov_24.778378:1-306 [pilon] Processing NODE_6556_length_500_cov_3.591029:1-500 [pilon] NODE_9696_length_338_cov_44.695853:1-338 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 224, Coverage: 26, minDepth: 7 [pilon] Confirmed 316 of 338 bases (93.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9696_length_338_cov_44.695853:1-338 [pilon] Processing NODE_4856_length_630_cov_14.190570:1-630 [pilon] NODE_3888_length_729_cov_55.652961:1-729 log: [pilon] frags shovill.bam: coverage 106 [pilon] Total Reads: 768, Coverage: 106, minDepth: 27 [pilon] Confirmed 632 of 729 bases (86.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3888_length_729_cov_55.652961:1-729 [pilon] Processing NODE_12145_length_243_cov_39.680328:1-243 [pilon] NODE_3232_length_828_cov_0.864215:1-828 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 20, Coverage: 3, minDepth: 5 [pilon] Confirmed 172 of 828 bases (20.77%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3232_length_828_cov_0.864215:1-828 [pilon] Processing NODE_2417_length_987_cov_21.240185:1-987 [pilon] NODE_13296_length_243_cov_20.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13296_length_243_cov_20.270492:1-243 [pilon] NODE_4173_length_696_cov_34.563478:1-696 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 447, Coverage: 55, minDepth: 14 [pilon] Confirmed 587 of 696 bases (84.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4173_length_696_cov_34.563478:1-696 [pilon] Processing NODE_1183_length_1406_cov_19.235019:1-1406 [pilon] NODE_5268_length_595_cov_3.436709:1-595 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 332 of 595 bases (55.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5268_length_595_cov_3.436709:1-595 [pilon] Processing NODE_1884_length_1117_cov_36.825301:1-1117 [pilon] NODE_3817_length_738_cov_27.016207:1-738 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 368, Coverage: 45, minDepth: 11 [pilon] Confirmed 567 of 738 bases (76.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3817_length_738_cov_27.016207:1-738 [pilon] Processing NODE_4413_length_670_cov_19.699454:1-670 [pilon] NODE_6449_length_507_cov_11.689119:1-507 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 114, Coverage: 11, minDepth: 5 [pilon] Confirmed 418 of 507 bases (82.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6449_length_507_cov_11.689119:1-507 [pilon] Processing NODE_13365_length_243_cov_19.696721:1-243 [pilon] NODE_4951_length_622_cov_19.431138:1-622 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 204, Coverage: 23, minDepth: 6 [pilon] Confirmed 555 of 622 bases (89.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4951_length_622_cov_19.431138:1-622 [pilon] Processing NODE_14211_length_243_cov_12.524590:1-243 [pilon] NODE_9254_length_355_cov_39.000000:1-355 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 217, Coverage: 34, minDepth: 9 [pilon] Confirmed 306 of 355 bases (86.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9254_length_355_cov_39.000000:1-355 [pilon] Processing NODE_13597_length_243_cov_17.524590:1-243 [pilon] NODE_10224_length_316_cov_5.656410:1-316 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 316 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10224_length_316_cov_5.656410:1-316 [pilon] Processing NODE_12533_length_243_cov_28.598361:1-243 [pilon] NODE_5503_length_577_cov_2.660088:1-577 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 46, Coverage: 9, minDepth: 5 [pilon] Confirmed 322 of 577 bases (55.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5503_length_577_cov_2.660088:1-577 [pilon] Processing NODE_10275_length_314_cov_64.347150:1-314 [pilon] NODE_430_length_1995_cov_15.535752:1-1995 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 778, Coverage: 46, minDepth: 12 [pilon] Confirmed 1623 of 1995 bases (81.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_430_length_1995_cov_15.535752:1-1995 [pilon] Processing NODE_14663_length_243_cov_8.918033:1-243 [pilon] NODE_3342_length_806_cov_50.366423:1-806 log: [pilon] frags shovill.bam: coverage 98 [pilon] Total Reads: 808, Coverage: 98, minDepth: 25 [pilon] Confirmed 742 of 806 bases (92.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3342_length_806_cov_50.366423:1-806 [pilon] Processing NODE_14092_length_243_cov_13.508197:1-243 [pilon] NODE_10947_length_286_cov_5.951515:1-286 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 167 of 286 bases (58.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_11262_length_273_cov_18.092105:1-273 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 63, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 273 bases (47.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11262_length_273_cov_18.092105:1-273 [pilon] Finished processing NODE_10947_length_286_cov_5.951515:1-286 [pilon] Processing NODE_267_length_2297_cov_17.295496:1-2297 [pilon] Processing NODE_11301_length_272_cov_21.450331:1-272 [pilon] NODE_5119_length_608_cov_32.593429:1-608 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 414, Coverage: 37, minDepth: 9 [pilon] Confirmed 517 of 608 bases (85.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5119_length_608_cov_32.593429:1-608 [pilon] Processing NODE_10428_length_307_cov_18.924731:1-307 [pilon] NODE_6067_length_534_cov_21.699758:1-534 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 212, Coverage: 25, minDepth: 6 [pilon] Confirmed 371 of 534 bases (69.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6067_length_534_cov_21.699758:1-534 [pilon] Processing NODE_5041_length_616_cov_0.755556:1-616 [pilon] NODE_1835_length_1133_cov_20.865613:1-1133 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 525, Coverage: 39, minDepth: 10 [pilon] Confirmed 978 of 1133 bases (86.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1835_length_1133_cov_20.865613:1-1133 [pilon] Processing NODE_5055_length_614_cov_26.229209:1-614 [pilon] NODE_8028_length_417_cov_17.266892:1-417 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 126, Coverage: 14, minDepth: 5 [pilon] Confirmed 322 of 417 bases (77.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8028_length_417_cov_17.266892:1-417 [pilon] Processing NODE_473_length_1946_cov_23.375342:1-1946 [pilon] NODE_9344_length_352_cov_21.995671:1-352 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 93, Coverage: 10, minDepth: 5 [pilon] Confirmed 197 of 352 bases (55.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9344_length_352_cov_21.995671:1-352 [pilon] Processing NODE_8984_length_367_cov_20.231707:1-367 [pilon] NODE_4645_length_648_cov_18.595825:1-648 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 248, Coverage: 20, minDepth: 5 [pilon] Confirmed 486 of 648 bases (75.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4645_length_648_cov_18.595825:1-648 [pilon] Processing NODE_1549_length_1241_cov_1.876786:1-1241 [pilon] NODE_4374_length_673_cov_31.003623:1-673 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 376, Coverage: 57, minDepth: 14 [pilon] Confirmed 542 of 673 bases (80.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4374_length_673_cov_31.003623:1-673 [pilon] Processing NODE_6710_length_489_cov_37.475543:1-489 [pilon] NODE_12145_length_243_cov_39.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 100, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12145_length_243_cov_39.680328:1-243 [pilon] Processing NODE_14367_length_243_cov_11.319672:1-243 [pilon] NODE_3882_length_730_cov_10.817734:1-730 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 155, Coverage: 15, minDepth: 5 [pilon] Confirmed 606 of 730 bases (83.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3882_length_730_cov_10.817734:1-730 [pilon] Processing NODE_13125_length_243_cov_21.737705:1-243 [pilon] NODE_7543_length_441_cov_18.828125:1-441 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 134, Coverage: 18, minDepth: 5 [pilon] Confirmed 307 of 441 bases (69.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7543_length_441_cov_18.828125:1-441 [pilon] Processing NODE_2068_length_1068_cov_9.560718:1-1068 [pilon] NODE_4413_length_670_cov_19.699454:1-670 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 278, Coverage: 27, minDepth: 7 [pilon] Confirmed 438 of 670 bases (65.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4413_length_670_cov_19.699454:1-670 [pilon] Processing NODE_5091_length_611_cov_2.934694:1-611 [pilon] NODE_3809_length_739_cov_43.477346:1-739 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 604, Coverage: 78, minDepth: 20 [pilon] Confirmed 612 of 739 bases (82.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3809_length_739_cov_43.477346:1-739 [pilon] Processing NODE_12692_length_243_cov_26.352459:1-243 [pilon] NODE_6556_length_500_cov_3.591029:1-500 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 304 of 500 bases (60.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6556_length_500_cov_3.591029:1-500 [pilon] Processing NODE_4317_length_679_cov_1.250896:1-679 [pilon] NODE_14092_length_243_cov_13.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 11, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14092_length_243_cov_13.508197:1-243 [pilon] Processing NODE_1221_length_1380_cov_18.859412:1-1380 [pilon] NODE_4856_length_630_cov_14.190570:1-630 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 269, Coverage: 39, minDepth: 10 [pilon] Confirmed 444 of 630 bases (70.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4856_length_630_cov_14.190570:1-630 [pilon] Processing NODE_9898_length_330_cov_17.373206:1-330 [pilon] NODE_2417_length_987_cov_21.240185:1-987 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 527, Coverage: 62, minDepth: 16 [pilon] Confirmed 635 of 987 bases (64.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2417_length_987_cov_21.240185:1-987 [pilon] Processing NODE_11805_length_252_cov_27.396947:1-252 [pilon] NODE_1183_length_1406_cov_19.235019:1-1406 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 577, Coverage: 35, minDepth: 9 [pilon] Confirmed 1186 of 1406 bases (84.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1183_length_1406_cov_19.235019:1-1406 [pilon] Processing NODE_1500_length_1258_cov_12.122252:1-1258 [pilon] NODE_14663_length_243_cov_8.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14663_length_243_cov_8.918033:1-243 [pilon] Processing NODE_10669_length_299_cov_18.353933:1-299 [pilon] NODE_14211_length_243_cov_12.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14211_length_243_cov_12.524590:1-243 [pilon] Processing NODE_9047_length_363_cov_39.185950:1-363 [pilon] NODE_13365_length_243_cov_19.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13365_length_243_cov_19.696721:1-243 [pilon] Processing NODE_1365_length_1311_cov_16.090756:1-1311 [pilon] NODE_8984_length_367_cov_20.231707:1-367 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 132, Coverage: 12, minDepth: 5 [pilon] Confirmed 317 of 367 bases (86.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8984_length_367_cov_20.231707:1-367 [pilon] Processing NODE_11851_length_252_cov_6.938931:1-252 [pilon] NODE_10428_length_307_cov_18.924731:1-307 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 97, Coverage: 12, minDepth: 5 [pilon] Confirmed 262 of 307 bases (85.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10428_length_307_cov_18.924731:1-307 [pilon] Processing NODE_1228_length_1375_cov_8.806220:1-1375 [pilon] NODE_6710_length_489_cov_37.475543:1-489 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 331, Coverage: 31, minDepth: 8 [pilon] Confirmed 243 of 489 bases (49.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6710_length_489_cov_37.475543:1-489 [pilon] Processing NODE_4128_length_702_cov_2.182444:1-702 [pilon] NODE_1884_length_1117_cov_36.825301:1-1117 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 912, Coverage: 49, minDepth: 12 [pilon] Confirmed 867 of 1117 bases (77.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1884_length_1117_cov_36.825301:1-1117 [pilon] Processing NODE_10471_length_306_cov_11.070270:1-306 [pilon] NODE_12533_length_243_cov_28.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 81, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12533_length_243_cov_28.598361:1-243 [pilon] Processing NODE_3621_length_765_cov_15.364907:1-765 [pilon] NODE_11301_length_272_cov_21.450331:1-272 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 64, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 272 bases (47.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11301_length_272_cov_21.450331:1-272 [pilon] Processing NODE_12002_length_246_cov_17.920000:1-246 [pilon] NODE_10275_length_314_cov_64.347150:1-314 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 273, Coverage: 41, minDepth: 10 [pilon] Confirmed 285 of 314 bases (90.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10275_length_314_cov_64.347150:1-314 [pilon] Processing NODE_7222_length_459_cov_3.934911:1-459 [pilon] NODE_13597_length_243_cov_17.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13597_length_243_cov_17.524590:1-243 [pilon] Processing NODE_1420_length_1291_cov_26.670085:1-1291 [pilon] NODE_5055_length_614_cov_26.229209:1-614 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 311, Coverage: 22, minDepth: 6 [pilon] Confirmed 460 of 614 bases (74.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5055_length_614_cov_26.229209:1-614 [pilon] Processing NODE_2860_length_900_cov_15.763800:1-900 [pilon] NODE_267_length_2297_cov_17.295496:1-2297 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1058, Coverage: 54, minDepth: 14 [pilon] Confirmed 1577 of 2297 bases (68.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_267_length_2297_cov_17.295496:1-2297 [pilon] Processing NODE_12676_length_243_cov_26.483607:1-243 [pilon] NODE_5091_length_611_cov_2.934694:1-611 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 436 of 611 bases (71.36%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5091_length_611_cov_2.934694:1-611 [pilon] Processing NODE_12999_length_243_cov_22.918033:1-243 [pilon] NODE_5041_length_616_cov_0.755556:1-616 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 186 of 616 bases (30.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5041_length_616_cov_0.755556:1-616 [pilon] Processing NODE_9995_length_326_cov_9.721951:1-326 [pilon] NODE_14367_length_243_cov_11.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14367_length_243_cov_11.319672:1-243 [pilon] Processing NODE_4585_length_654_cov_40.838649:1-654 [pilon] NODE_1549_length_1241_cov_1.876786:1-1241 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 63, Coverage: 6, minDepth: 5 [pilon] Confirmed 629 of 1241 bases (50.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1549_length_1241_cov_1.876786:1-1241 [pilon] Processing NODE_6125_length_530_cov_2.506112:1-530 [pilon] NODE_473_length_1946_cov_23.375342:1-1946 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 1050, Coverage: 45, minDepth: 11 [pilon] Confirmed 1665 of 1946 bases (85.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_473_length_1946_cov_23.375342:1-1946 [pilon] Processing NODE_11048_length_282_cov_8.664596:1-282 [pilon] NODE_13125_length_243_cov_21.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13125_length_243_cov_21.737705:1-243 [pilon] Processing NODE_233_length_2405_cov_26.254816:1-2405 [pilon] NODE_9898_length_330_cov_17.373206:1-330 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 67, Coverage: 6, minDepth: 5 [pilon] Confirmed 201 of 330 bases (60.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9898_length_330_cov_17.373206:1-330 [pilon] Processing NODE_2204_length_1032_cov_32.227223:1-1032 [pilon] NODE_2068_length_1068_cov_9.560718:1-1068 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 200, Coverage: 13, minDepth: 5 [pilon] Confirmed 781 of 1068 bases (73.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2068_length_1068_cov_9.560718:1-1068 [pilon] Processing NODE_2608_length_944_cov_20.780073:1-944 [pilon] NODE_11851_length_252_cov_6.938931:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11851_length_252_cov_6.938931:1-252 [pilon] Processing NODE_15162_length_183_cov_5.725806:1-183 [pilon] NODE_12692_length_243_cov_26.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12692_length_243_cov_26.352459:1-243 [pilon] Processing NODE_1958_length_1096_cov_2.056410:1-1096 [pilon] NODE_4128_length_702_cov_2.182444:1-702 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 36, Coverage: 6, minDepth: 5 [pilon] Confirmed 447 of 702 bases (63.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4128_length_702_cov_2.182444:1-702 [pilon] Processing NODE_3835_length_736_cov_9.899187:1-736 [pilon] NODE_4317_length_679_cov_1.250896:1-679 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 365 of 679 bases (53.76%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4317_length_679_cov_1.250896:1-679 [pilon] Processing NODE_9766_length_336_cov_10.893023:1-336 [pilon] NODE_3621_length_765_cov_15.364907:1-765 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 222, Coverage: 32, minDepth: 8 [pilon] Confirmed 586 of 765 bases (76.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3621_length_765_cov_15.364907:1-765 [pilon] Processing NODE_618_length_1787_cov_19.458583:1-1787 [pilon] NODE_1221_length_1380_cov_18.859412:1-1380 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 680, Coverage: 58, minDepth: 15 [pilon] Confirmed 976 of 1380 bases (70.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1221_length_1380_cov_18.859412:1-1380 [pilon] Processing NODE_8119_length_412_cov_2.457045:1-412 [pilon] NODE_10669_length_299_cov_18.353933:1-299 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 88, Coverage: 14, minDepth: 5 [pilon] Confirmed 250 of 299 bases (83.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10669_length_299_cov_18.353933:1-299 [pilon] Processing NODE_2959_length_881_cov_2.256579:1-881 [pilon] NODE_12999_length_243_cov_22.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12999_length_243_cov_22.918033:1-243 [pilon] Processing NODE_7691_length_433_cov_0.371795:1-433 [pilon] NODE_11805_length_252_cov_27.396947:1-252 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 89, Coverage: 7, minDepth: 5 [pilon] Confirmed 157 of 252 bases (62.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11805_length_252_cov_27.396947:1-252 [pilon] Processing NODE_6892_length_478_cov_0.890756:1-478 [pilon] NODE_1500_length_1258_cov_12.122252:1-1258 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 479, Coverage: 36, minDepth: 9 [pilon] Confirmed 794 of 1258 bases (63.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1500_length_1258_cov_12.122252:1-1258 [pilon] Processing NODE_9464_length_348_cov_6.484581:1-348 [pilon] NODE_1365_length_1311_cov_16.090756:1-1311 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 454, Coverage: 40, minDepth: 10 [pilon] Confirmed 1112 of 1311 bases (84.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1365_length_1311_cov_16.090756:1-1311 [pilon] Processing NODE_1841_length_1132_cov_21.156281:1-1132 [pilon] NODE_9047_length_363_cov_39.185950:1-363 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 160, Coverage: 21, minDepth: 5 [pilon] Confirmed 253 of 363 bases (69.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9047_length_363_cov_39.185950:1-363 [pilon] Processing NODE_6972_length_473_cov_29.178977:1-473 [pilon] NODE_1420_length_1291_cov_26.670085:1-1291 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 734, Coverage: 62, minDepth: 16 [pilon] Confirmed 1083 of 1291 bases (83.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1420_length_1291_cov_26.670085:1-1291 [pilon] Processing NODE_4540_length_658_cov_1.702048:1-658 [pilon] NODE_10471_length_306_cov_11.070270:1-306 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 42, Coverage: 3, minDepth: 5 [pilon] Confirmed 113 of 306 bases (36.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10471_length_306_cov_11.070270:1-306 [pilon] Processing NODE_8344_length_402_cov_50.615658:1-402 [pilon] NODE_7222_length_459_cov_3.934911:1-459 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 37, Coverage: 9, minDepth: 5 [pilon] Confirmed 335 of 459 bases (72.98%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7222_length_459_cov_3.934911:1-459 [pilon] Processing NODE_1388_length_1300_cov_31.295165:1-1300 [pilon] NODE_1228_length_1375_cov_8.806220:1-1375 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 336, Coverage: 23, minDepth: 6 [pilon] Confirmed 987 of 1375 bases (71.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1228_length_1375_cov_8.806220:1-1375 [pilon] Processing NODE_3383_length_800_cov_3.703976:1-800 [pilon] NODE_12002_length_246_cov_17.920000:1-246 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 53, Coverage: 7, minDepth: 5 [pilon] Confirmed 183 of 246 bases (74.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12002_length_246_cov_17.920000:1-246 [pilon] Processing NODE_13469_length_243_cov_18.696721:1-243 [pilon] NODE_2860_length_900_cov_15.763800:1-900 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 287, Coverage: 27, minDepth: 7 [pilon] Confirmed 743 of 900 bases (82.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2860_length_900_cov_15.763800:1-900 [pilon] Processing NODE_13823_length_243_cov_15.450820:1-243 [pilon] NODE_12676_length_243_cov_26.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12676_length_243_cov_26.483607:1-243 [pilon] Processing NODE_3140_length_844_cov_3.134163:1-844 [pilon] NODE_9995_length_326_cov_9.721951:1-326 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 47, Coverage: 6, minDepth: 5 [pilon] Confirmed 179 of 326 bases (54.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9995_length_326_cov_9.721951:1-326 [pilon] Processing NODE_4474_length_664_cov_1.924494:1-664 [pilon] NODE_6125_length_530_cov_2.506112:1-530 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 40, Coverage: 9, minDepth: 5 [pilon] Confirmed 427 of 530 bases (80.57%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6125_length_530_cov_2.506112:1-530 [pilon] Processing NODE_9508_length_345_cov_22.566964:1-345 [pilon] NODE_15162_length_183_cov_5.725806:1-183 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 183 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15162_length_183_cov_5.725806:1-183 [pilon] Processing NODE_2921_length_888_cov_29.533246:1-888 [pilon] NODE_3835_length_736_cov_9.899187:1-736 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 199, Coverage: 29, minDepth: 7 [pilon] Confirmed 596 of 736 bases (80.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3835_length_736_cov_9.899187:1-736 [pilon] Processing NODE_2914_length_890_cov_2.676203:1-890 [pilon] NODE_4585_length_654_cov_40.838649:1-654 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 498, Coverage: 76, minDepth: 19 [pilon] Confirmed 548 of 654 bases (83.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4585_length_654_cov_40.838649:1-654 [pilon] Processing NODE_13651_length_243_cov_16.991803:1-243 [pilon] NODE_2204_length_1032_cov_32.227223:1-1032 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 669, Coverage: 69, minDepth: 17 [pilon] Confirmed 928 of 1032 bases (89.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2204_length_1032_cov_32.227223:1-1032 [pilon] Processing NODE_14382_length_243_cov_11.188525:1-243 [pilon] NODE_11048_length_282_cov_8.664596:1-282 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 35, Coverage: 4, minDepth: 5 [pilon] Confirmed 124 of 282 bases (43.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11048_length_282_cov_8.664596:1-282 [pilon] Processing NODE_12331_length_243_cov_32.540984:1-243 [pilon] NODE_618_length_1787_cov_19.458583:1-1787 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 822, Coverage: 41, minDepth: 10 [pilon] Confirmed 1330 of 1787 bases (74.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_618_length_1787_cov_19.458583:1-1787 [pilon] Processing NODE_929_length_1541_cov_43.703521:1-1541 [pilon] NODE_7691_length_433_cov_0.371795:1-433 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 5, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 433 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7691_length_433_cov_0.371795:1-433 [pilon] Processing NODE_5329_length_590_cov_25.597015:1-590 [pilon] NODE_233_length_2405_cov_26.254816:1-2405 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 1474, Coverage: 55, minDepth: 14 [pilon] Confirmed 2268 of 2405 bases (94.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_233_length_2405_cov_26.254816:1-2405 [pilon] Processing NODE_5263_length_596_cov_1.212632:1-596 [pilon] NODE_2608_length_944_cov_20.780073:1-944 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 371, Coverage: 47, minDepth: 12 [pilon] Confirmed 752 of 944 bases (79.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2608_length_944_cov_20.780073:1-944 [pilon] Processing NODE_8826_length_375_cov_26.818898:1-375 [pilon] NODE_9766_length_336_cov_10.893023:1-336 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 58, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 336 bases (38.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9766_length_336_cov_10.893023:1-336 [pilon] Processing NODE_6552_length_500_cov_23.419525:1-500 [pilon] NODE_1958_length_1096_cov_2.056410:1-1096 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 69, Coverage: 8, minDepth: 5 [pilon] Confirmed 722 of 1096 bases (65.88%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1958_length_1096_cov_2.056410:1-1096 [pilon] Processing NODE_663_length_1734_cov_22.393056:1-1734 [pilon] NODE_8119_length_412_cov_2.457045:1-412 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 21, Coverage: 6, minDepth: 5 [pilon] Confirmed 294 of 412 bases (71.36%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_6892_length_478_cov_0.890756:1-478 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 13 of 478 bases (2.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6892_length_478_cov_0.890756:1-478 [pilon] Finished processing NODE_8119_length_412_cov_2.457045:1-412 [pilon] Processing NODE_3851_length_734_cov_14.771615:1-734 [pilon] Processing NODE_3070_length_859_cov_3.436314:1-859 [pilon] NODE_2959_length_881_cov_2.256579:1-881 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 54, Coverage: 8, minDepth: 5 [pilon] Confirmed 522 of 881 bases (59.25%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2959_length_881_cov_2.256579:1-881 [pilon] Processing NODE_5928_length_546_cov_1.835294:1-546 [pilon] NODE_9464_length_348_cov_6.484581:1-348 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 39, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 348 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9464_length_348_cov_6.484581:1-348 [pilon] Processing NODE_10813_length_292_cov_8.286550:1-292 [pilon] NODE_4474_length_664_cov_1.924494:1-664 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 36, Coverage: 7, minDepth: 5 [pilon] Confirmed 402 of 664 bases (60.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4474_length_664_cov_1.924494:1-664 [pilon] Processing NODE_11820_length_252_cov_17.480916:1-252 [pilon] NODE_4540_length_658_cov_1.702048:1-658 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 373 of 658 bases (56.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4540_length_658_cov_1.702048:1-658 [pilon] Processing NODE_3142_length_843_cov_14.426593:1-843 [pilon] NODE_8344_length_402_cov_50.615658:1-402 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 332, Coverage: 60, minDepth: 15 [pilon] Confirmed 351 of 402 bases (87.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8344_length_402_cov_50.615658:1-402 [pilon] Processing NODE_8234_length_407_cov_9.475524:1-407 [pilon] NODE_1841_length_1132_cov_21.156281:1-1132 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 595, Coverage: 26, minDepth: 7 [pilon] Confirmed 943 of 1132 bases (83.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1841_length_1132_cov_21.156281:1-1132 [pilon] Processing NODE_12111_length_243_cov_45.786885:1-243 [pilon] NODE_13651_length_243_cov_16.991803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13651_length_243_cov_16.991803:1-243 [pilon] Processing NODE_300_length_2239_cov_19.581209:1-2239 [pilon] NODE_6972_length_473_cov_29.178977:1-473 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 233, Coverage: 32, minDepth: 8 [pilon] Confirmed 429 of 473 bases (90.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6972_length_473_cov_29.178977:1-473 [pilon] Processing NODE_3131_length_846_cov_1.234483:1-846 [pilon] NODE_2914_length_890_cov_2.676203:1-890 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 58, Coverage: 8, minDepth: 5 [pilon] Confirmed 610 of 890 bases (68.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2914_length_890_cov_2.676203:1-890 [pilon] Processing NODE_2588_length_948_cov_2.210399:1-948 [pilon] NODE_13469_length_243_cov_18.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13469_length_243_cov_18.696721:1-243 [pilon] Processing NODE_1961_length_1095_cov_27.591376:1-1095 [pilon] NODE_2921_length_888_cov_29.533246:1-888 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 529, Coverage: 57, minDepth: 14 [pilon] Confirmed 795 of 888 bases (89.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2921_length_888_cov_29.533246:1-888 [pilon] Processing NODE_13863_length_243_cov_15.172131:1-243 [pilon] NODE_3383_length_800_cov_3.703976:1-800 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 65, Coverage: 10, minDepth: 5 [pilon] Confirmed 675 of 800 bases (84.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3383_length_800_cov_3.703976:1-800 [pilon] Processing NODE_9635_length_340_cov_10.123288:1-340 [pilon] NODE_1388_length_1300_cov_31.295165:1-1300 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 933, Coverage: 50, minDepth: 13 [pilon] Confirmed 1094 of 1300 bases (84.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1388_length_1300_cov_31.295165:1-1300 [pilon] Processing NODE_15117_length_213_cov_3.717391:1-213 [pilon] NODE_5329_length_590_cov_25.597015:1-590 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 284, Coverage: 36, minDepth: 9 [pilon] Confirmed 481 of 590 bases (81.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5329_length_590_cov_25.597015:1-590 [pilon] Processing NODE_3010_length_871_cov_12.044000:1-871 [pilon] NODE_3140_length_844_cov_3.134163:1-844 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 58, Coverage: 8, minDepth: 5 [pilon] Confirmed 572 of 844 bases (67.77%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3140_length_844_cov_3.134163:1-844 [pilon] Processing NODE_8335_length_403_cov_1.539007:1-403 [pilon] Processing NODE_3728_length_751_cov_1.198413:1-751 [pilon] NODE_13823_length_243_cov_15.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13823_length_243_cov_15.450820:1-243 [pilon] Processing NODE_10272_length_315_cov_6.082474:1-315 [pilon] NODE_929_length_1541_cov_43.703521:1-1541 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 1505, Coverage: 91, minDepth: 23 [pilon] Confirmed 1427 of 1541 bases (92.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_929_length_1541_cov_43.703521:1-1541 [pilon] Processing NODE_13400_length_243_cov_19.303279:1-243 [pilon] NODE_9508_length_345_cov_22.566964:1-345 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 101, Coverage: 13, minDepth: 5 [pilon] Confirmed 238 of 345 bases (68.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9508_length_345_cov_22.566964:1-345 [pilon] Processing NODE_1005_length_1491_cov_3.470073:1-1491 [pilon] NODE_14382_length_243_cov_11.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14382_length_243_cov_11.188525:1-243 [pilon] Processing NODE_9729_length_336_cov_34.502326:1-336 [pilon] NODE_12331_length_243_cov_32.540984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12331_length_243_cov_32.540984:1-243 [pilon] Processing NODE_10115_length_321_cov_13.205000:1-321 [pilon] NODE_8826_length_375_cov_26.818898:1-375 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 138, Coverage: 14, minDepth: 5 [pilon] Confirmed 220 of 375 bases (58.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8826_length_375_cov_26.818898:1-375 [pilon] Processing NODE_9197_length_357_cov_25.529661:1-357 [pilon] NODE_6552_length_500_cov_23.419525:1-500 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 204, Coverage: 27, minDepth: 7 [pilon] Confirmed 347 of 500 bases (69.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6552_length_500_cov_23.419525:1-500 [pilon] Processing NODE_8019_length_417_cov_26.050676:1-417 [pilon] NODE_5263_length_596_cov_1.212632:1-596 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 162 of 596 bases (27.18%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5263_length_596_cov_1.212632:1-596 [pilon] Processing NODE_3085_length_856_cov_16.540136:1-856 [pilon] NODE_11820_length_252_cov_17.480916:1-252 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 63, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11820_length_252_cov_17.480916:1-252 [pilon] Processing NODE_7688_length_433_cov_1.246795:1-433 [pilon] NODE_663_length_1734_cov_22.393056:1-1734 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 689, Coverage: 31, minDepth: 8 [pilon] Confirmed 1393 of 1734 bases (80.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_663_length_1734_cov_22.393056:1-1734 [pilon] Processing NODE_686_length_1714_cov_2.669178:1-1714 [pilon] NODE_3851_length_734_cov_14.771615:1-734 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 200, Coverage: 12, minDepth: 5 [pilon] Confirmed 586 of 734 bases (79.84%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3851_length_734_cov_14.771615:1-734 [pilon] Processing NODE_5238_length_597_cov_16.310924:1-597 [pilon] NODE_13863_length_243_cov_15.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13863_length_243_cov_15.172131:1-243 [pilon] Processing NODE_8857_length_374_cov_23.154150:1-374 [pilon] NODE_2588_length_948_cov_2.210399:1-948 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 65, Coverage: 9, minDepth: 5 [pilon] Confirmed 791 of 948 bases (83.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2588_length_948_cov_2.210399:1-948 [pilon] Processing NODE_4702_length_643_cov_9.266284:1-643 [pilon] NODE_5928_length_546_cov_1.835294:1-546 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 347 of 546 bases (63.55%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5928_length_546_cov_1.835294:1-546 [pilon] Processing NODE_48_length_3615_cov_1.363194:1-3615 [pilon] NODE_3070_length_859_cov_3.436314:1-859 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 65, Coverage: 10, minDepth: 5 [pilon] Confirmed 529 of 859 bases (61.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3070_length_859_cov_3.436314:1-859 [pilon] Processing NODE_296_length_2245_cov_2.052260:1-2245 [pilon] NODE_10813_length_292_cov_8.286550:1-292 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 27, Coverage: 2, minDepth: 5 [pilon] Confirmed 20 of 292 bases (6.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10813_length_292_cov_8.286550:1-292 [pilon] Processing NODE_13671_length_243_cov_16.778689:1-243 [pilon] NODE_3010_length_871_cov_12.044000:1-871 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 243, Coverage: 24, minDepth: 6 [pilon] Confirmed 793 of 871 bases (91.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3010_length_871_cov_12.044000:1-871 [pilon] Processing NODE_8230_length_407_cov_14.615385:1-407 [pilon] NODE_13400_length_243_cov_19.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13400_length_243_cov_19.303279:1-243 [pilon] Processing NODE_10503_length_304_cov_24.956284:1-304 [pilon] NODE_12111_length_243_cov_45.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 94, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12111_length_243_cov_45.786885:1-243 [pilon] Processing NODE_5288_length_593_cov_27.828390:1-593 [pilon] NODE_3142_length_843_cov_14.426593:1-843 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 269, Coverage: 27, minDepth: 7 [pilon] Confirmed 550 of 843 bases (65.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3142_length_843_cov_14.426593:1-843 [pilon] Processing NODE_4574_length_656_cov_0.588785:1-656 [pilon] NODE_8234_length_407_cov_9.475524:1-407 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 88, Coverage: 6, minDepth: 5 [pilon] Confirmed 278 of 407 bases (68.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8234_length_407_cov_9.475524:1-407 [pilon] Processing NODE_14611_length_243_cov_9.303279:1-243 [pilon] NODE_300_length_2239_cov_19.581209:1-2239 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 1044, Coverage: 40, minDepth: 10 [pilon] Confirmed 2004 of 2239 bases (89.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_300_length_2239_cov_19.581209:1-2239 [pilon] Processing NODE_10831_length_291_cov_18.594118:1-291 [pilon] NODE_3131_length_846_cov_1.234483:1-846 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 384 of 846 bases (45.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3131_length_846_cov_1.234483:1-846 [pilon] Processing NODE_2764_length_915_cov_12.686398:1-915 [pilon] NODE_1961_length_1095_cov_27.591376:1-1095 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 691, Coverage: 63, minDepth: 16 [pilon] Confirmed 837 of 1095 bases (76.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1961_length_1095_cov_27.591376:1-1095 [pilon] Processing NODE_892_length_1564_cov_25.633403:1-1564 [pilon] NODE_9635_length_340_cov_10.123288:1-340 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 49, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 340 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9635_length_340_cov_10.123288:1-340 [pilon] Processing NODE_6931_length_476_cov_0.732394:1-476 [pilon] NODE_15117_length_213_cov_3.717391:1-213 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 14, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 213 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15117_length_213_cov_3.717391:1-213 [pilon] Processing NODE_1485_length_1268_cov_3.373147:1-1268 [pilon] NODE_3728_length_751_cov_1.198413:1-751 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 19, Coverage: 3, minDepth: 5 [pilon] Confirmed 136 of 751 bases (18.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3728_length_751_cov_1.198413:1-751 [pilon] Processing NODE_4859_length_630_cov_2.090373:1-630 [pilon] NODE_8335_length_403_cov_1.539007:1-403 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 17, Coverage: 5, minDepth: 5 [pilon] Confirmed 261 of 403 bases (64.76%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8335_length_403_cov_1.539007:1-403 [pilon] Processing NODE_14720_length_243_cov_8.434426:1-243 [pilon] NODE_1005_length_1491_cov_3.470073:1-1491 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 128, Coverage: 11, minDepth: 5 [pilon] Confirmed 1319 of 1491 bases (88.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1005_length_1491_cov_3.470073:1-1491 [pilon] NODE_10272_length_315_cov_6.082474:1-315 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10272_length_315_cov_6.082474:1-315 [pilon] Processing NODE_11113_length_279_cov_17.746835:1-279 [pilon] NODE_7688_length_433_cov_1.246795:1-433 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 13, Coverage: 4, minDepth: 5 [pilon] Confirmed 247 of 433 bases (57.04%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7688_length_433_cov_1.246795:1-433 [pilon] Processing NODE_8246_length_407_cov_0.569930:1-407 [pilon] NODE_4702_length_643_cov_9.266284:1-643 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 131, Coverage: 13, minDepth: 5 [pilon] Confirmed 375 of 643 bases (58.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4702_length_643_cov_9.266284:1-643 [pilon] Processing NODE_564_length_1845_cov_3.053364:1-1845 [pilon] NODE_10115_length_321_cov_13.205000:1-321 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 60, Coverage: 9, minDepth: 5 [pilon] Confirmed 215 of 321 bases (66.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10115_length_321_cov_13.205000:1-321 [pilon] NODE_3085_length_856_cov_16.540136:1-856 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 310, Coverage: 27, minDepth: 7 [pilon] Confirmed 675 of 856 bases (78.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_11044_length_282_cov_9.664596:1-282 [pilon] Finished processing NODE_3085_length_856_cov_16.540136:1-856 [pilon] Processing NODE_9041_length_364_cov_18.370370:1-364 [pilon] NODE_8857_length_374_cov_23.154150:1-374 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 126, Coverage: 14, minDepth: 5 [pilon] Confirmed 223 of 374 bases (59.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8857_length_374_cov_23.154150:1-374 [pilon] Processing NODE_876_length_1578_cov_18.879890:1-1578 [pilon] NODE_9729_length_336_cov_34.502326:1-336 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 115, Coverage: 8, minDepth: 5 [pilon] Confirmed 152 of 336 bases (45.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9729_length_336_cov_34.502326:1-336 [pilon] Processing NODE_10094_length_321_cov_20.830000:1-321 [pilon] NODE_8019_length_417_cov_26.050676:1-417 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 166, Coverage: 19, minDepth: 5 [pilon] Confirmed 263 of 417 bases (63.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8019_length_417_cov_26.050676:1-417 [pilon] Processing NODE_15090_length_227_cov_53.207547:1-227 [pilon] NODE_9197_length_357_cov_25.529661:1-357 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 92, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 357 bases (36.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9197_length_357_cov_25.529661:1-357 [pilon] Processing NODE_7231_length_458_cov_51.329377:1-458 [pilon] NODE_8230_length_407_cov_14.615385:1-407 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 92, Coverage: 16, minDepth: 5 [pilon] Confirmed 310 of 407 bases (76.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8230_length_407_cov_14.615385:1-407 [pilon] Processing NODE_9950_length_327_cov_31.577670:1-327 [pilon] NODE_10503_length_304_cov_24.956284:1-304 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 95, Coverage: 16, minDepth: 5 [pilon] Confirmed 248 of 304 bases (81.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10503_length_304_cov_24.956284:1-304 [pilon] Processing NODE_5459_length_580_cov_10.054466:1-580 [pilon] NODE_5238_length_597_cov_16.310924:1-597 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 170, Coverage: 28, minDepth: 7 [pilon] Confirmed 424 of 597 bases (71.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5238_length_597_cov_16.310924:1-597 [pilon] Processing NODE_11224_length_274_cov_28.045752:1-274 [pilon] NODE_296_length_2245_cov_2.052260:1-2245 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 130, Coverage: 7, minDepth: 5 [pilon] Confirmed 1307 of 2245 bases (58.22%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_296_length_2245_cov_2.052260:1-2245 [pilon] Processing NODE_12972_length_243_cov_23.221311:1-243 [pilon] NODE_13671_length_243_cov_16.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13671_length_243_cov_16.778689:1-243 [pilon] Processing NODE_7730_length_431_cov_5.422581:1-431 [pilon] NODE_48_length_3615_cov_1.363194:1-3615 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 161, Coverage: 6, minDepth: 5 [pilon] Confirmed 2189 of 3615 bases (60.55%) [pilon] Corrected 7 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_48_length_3615_cov_1.363194:1-3615 [pilon] Processing NODE_7337_length_451_cov_28.548485:1-451 [pilon] NODE_686_length_1714_cov_2.669178:1-1714 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 121, Coverage: 8, minDepth: 5 [pilon] Confirmed 1170 of 1714 bases (68.26%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_686_length_1714_cov_2.669178:1-1714 [pilon] Processing NODE_2573_length_952_cov_23.587244:1-952 [pilon] NODE_4574_length_656_cov_0.588785:1-656 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 14, Coverage: 3, minDepth: 5 [pilon] Confirmed 46 of 656 bases (7.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4574_length_656_cov_0.588785:1-656 [pilon] Processing NODE_5941_length_545_cov_13.629717:1-545 [pilon] NODE_14611_length_243_cov_9.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14611_length_243_cov_9.303279:1-243 [pilon] Processing NODE_6895_length_477_cov_46.547753:1-477 [pilon] NODE_8246_length_407_cov_0.569930:1-407 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 95 of 407 bases (23.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8246_length_407_cov_0.569930:1-407 [pilon] Processing NODE_7415_length_447_cov_19.656442:1-447 [pilon] NODE_5288_length_593_cov_27.828390:1-593 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 297, Coverage: 28, minDepth: 7 [pilon] Confirmed 434 of 593 bases (73.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5288_length_593_cov_27.828390:1-593 [pilon] Processing NODE_7221_length_459_cov_6.334320:1-459 [pilon] NODE_9041_length_364_cov_18.370370:1-364 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 102, Coverage: 10, minDepth: 5 [pilon] Confirmed 274 of 364 bases (75.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9041_length_364_cov_18.370370:1-364 [pilon] Processing NODE_51_length_3585_cov_28.879619:1-3585 [pilon] NODE_564_length_1845_cov_3.053364:1-1845 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 120, Coverage: 8, minDepth: 5 [pilon] Confirmed 1324 of 1845 bases (71.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_564_length_1845_cov_3.053364:1-1845 [pilon] Processing NODE_5161_length_605_cov_6.045455:1-605 [pilon] NODE_10831_length_291_cov_18.594118:1-291 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 69, Coverage: 7, minDepth: 5 [pilon] Confirmed 191 of 291 bases (65.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10831_length_291_cov_18.594118:1-291 [pilon] Processing NODE_1464_length_1276_cov_21.223377:1-1276 [pilon] NODE_6931_length_476_cov_0.732394:1-476 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 476 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6931_length_476_cov_0.732394:1-476 [pilon] Processing NODE_11682_length_257_cov_23.955882:1-257 [pilon] NODE_2764_length_915_cov_12.686398:1-915 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 226, Coverage: 19, minDepth: 5 [pilon] Confirmed 624 of 915 bases (68.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2764_length_915_cov_12.686398:1-915 [pilon] Processing NODE_12929_length_243_cov_23.672131:1-243 [pilon] NODE_1485_length_1268_cov_3.373147:1-1268 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 103, Coverage: 10, minDepth: 5 [pilon] Confirmed 982 of 1268 bases (77.44%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1485_length_1268_cov_3.373147:1-1268 [pilon] Processing NODE_9600_length_342_cov_13.149321:1-342 [pilon] NODE_14720_length_243_cov_8.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14720_length_243_cov_8.434426:1-243 [pilon] Processing NODE_9723_length_336_cov_69.600000:1-336 [pilon] NODE_4859_length_630_cov_2.090373:1-630 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 341 of 630 bases (54.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4859_length_630_cov_2.090373:1-630 [pilon] Processing NODE_1788_length_1150_cov_33.827988:1-1150 [pilon] NODE_876_length_1578_cov_18.879890:1-1578 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 681, Coverage: 51, minDepth: 13 [pilon] Confirmed 1352 of 1578 bases (85.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_876_length_1578_cov_18.879890:1-1578 [pilon] Processing NODE_9831_length_333_cov_16.009434:1-333 [pilon] NODE_892_length_1564_cov_25.633403:1-1564 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 941, Coverage: 50, minDepth: 13 [pilon] Confirmed 1152 of 1564 bases (73.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_892_length_1564_cov_25.633403:1-1564 [pilon] Processing NODE_3983_length_717_cov_0.822148:1-717 [pilon] NODE_9950_length_327_cov_31.577670:1-327 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 136, Coverage: 6, minDepth: 5 [pilon] Confirmed 163 of 327 bases (49.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9950_length_327_cov_31.577670:1-327 [pilon] Processing NODE_13711_length_243_cov_16.336066:1-243 [pilon] NODE_5459_length_580_cov_10.054466:1-580 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 128, Coverage: 15, minDepth: 5 [pilon] Confirmed 324 of 580 bases (55.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5459_length_580_cov_10.054466:1-580 [pilon] Processing NODE_8424_length_398_cov_24.602888:1-398 [pilon] NODE_11113_length_279_cov_17.746835:1-279 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 60, Coverage: 6, minDepth: 5 [pilon] Confirmed 184 of 279 bases (65.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11113_length_279_cov_17.746835:1-279 [pilon] Processing NODE_11323_length_270_cov_25.375839:1-270 [pilon] NODE_11044_length_282_cov_9.664596:1-282 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 37, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 282 bases (45.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11044_length_282_cov_9.664596:1-282 [pilon] Processing NODE_12382_length_243_cov_31.418033:1-243 [pilon] NODE_10094_length_321_cov_20.830000:1-321 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 85, Coverage: 16, minDepth: 5 [pilon] Confirmed 245 of 321 bases (76.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10094_length_321_cov_20.830000:1-321 [pilon] Processing NODE_7568_length_440_cov_1.702194:1-440 [pilon] NODE_15090_length_227_cov_53.207547:1-227 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 123, Coverage: 6, minDepth: 5 [pilon] Confirmed 137 of 227 bases (60.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15090_length_227_cov_53.207547:1-227 [pilon] Processing NODE_4058_length_710_cov_12.210526:1-710 [pilon] NODE_7231_length_458_cov_51.329377:1-458 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 377, Coverage: 70, minDepth: 18 [pilon] Confirmed 366 of 458 bases (79.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7231_length_458_cov_51.329377:1-458 [pilon] Processing NODE_15082_length_233_cov_6.892857:1-233 [pilon] NODE_11224_length_274_cov_28.045752:1-274 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 104, Coverage: 3, minDepth: 5 [pilon] Confirmed 65 of 274 bases (23.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11224_length_274_cov_28.045752:1-274 [pilon] NODE_7415_length_447_cov_19.656442:1-447 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 131, Coverage: 12, minDepth: 5 [pilon] Confirmed 301 of 447 bases (67.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7415_length_447_cov_19.656442:1-447 [pilon] Processing NODE_6289_length_518_cov_44.659950:1-518 [pilon] NODE_12972_length_243_cov_23.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12972_length_243_cov_23.221311:1-243 [pilon] Processing NODE_12107_length_243_cov_46.877049:1-243 [pilon] NODE_7730_length_431_cov_5.422581:1-431 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 51, Coverage: 4, minDepth: 5 [pilon] Confirmed 131 of 431 bases (30.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7730_length_431_cov_5.422581:1-431 [pilon] Processing NODE_15139_length_198_cov_3.116883:1-198 [pilon] NODE_7337_length_451_cov_28.548485:1-451 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 202, Coverage: 33, minDepth: 8 [pilon] Confirmed 417 of 451 bases (92.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7337_length_451_cov_28.548485:1-451 [pilon] Processing NODE_9809_length_333_cov_30.165094:1-333 [pilon] NODE_2573_length_952_cov_23.587244:1-952 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 432, Coverage: 43, minDepth: 11 [pilon] Confirmed 840 of 952 bases (88.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2573_length_952_cov_23.587244:1-952 [pilon] Processing NODE_13898_length_243_cov_14.926230:1-243 [pilon] NODE_5941_length_545_cov_13.629717:1-545 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 114, Coverage: 27, minDepth: 7 [pilon] Confirmed 425 of 545 bases (77.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5941_length_545_cov_13.629717:1-545 [pilon] Processing NODE_5548_length_574_cov_1.962472:1-574 [pilon] NODE_51_length_3585_cov_28.879619:1-3585 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 2448, Coverage: 67, minDepth: 17 [pilon] Confirmed 3328 of 3585 bases (92.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_51_length_3585_cov_28.879619:1-3585 [pilon] Processing NODE_6643_length_494_cov_65.493298:1-494 [pilon] NODE_13711_length_243_cov_16.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13711_length_243_cov_16.336066:1-243 [pilon] NODE_1788_length_1150_cov_33.827988:1-1150 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 837, Coverage: 51, minDepth: 13 [pilon] Confirmed 986 of 1150 bases (85.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1788_length_1150_cov_33.827988:1-1150 [pilon] Processing NODE_2654_length_937_cov_0.421569:1-937 [pilon] Processing NODE_6555_length_500_cov_11.678100:1-500 [pilon] NODE_9831_length_333_cov_16.009434:1-333 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 79, Coverage: 16, minDepth: 5 [pilon] Confirmed 290 of 333 bases (87.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9831_length_333_cov_16.009434:1-333 [pilon] Processing NODE_10537_length_303_cov_19.846154:1-303 [pilon] NODE_6895_length_477_cov_46.547753:1-477 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 377, Coverage: 74, minDepth: 19 [pilon] Confirmed 390 of 477 bases (81.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6895_length_477_cov_46.547753:1-477 [pilon] Processing NODE_13553_length_243_cov_17.918033:1-243 [pilon] NODE_8424_length_398_cov_24.602888:1-398 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 169, Coverage: 28, minDepth: 7 [pilon] Confirmed 353 of 398 bases (88.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8424_length_398_cov_24.602888:1-398 [pilon] Processing NODE_8068_length_414_cov_58.747440:1-414 [pilon] NODE_12929_length_243_cov_23.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12929_length_243_cov_23.672131:1-243 [pilon] Processing NODE_2158_length_1043_cov_1.779826:1-1043 [pilon] NODE_9600_length_342_cov_13.149321:1-342 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 73, Coverage: 5, minDepth: 5 [pilon] Confirmed 164 of 342 bases (47.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9600_length_342_cov_13.149321:1-342 [pilon] Processing NODE_10788_length_294_cov_12.959538:1-294 [pilon] NODE_7221_length_459_cov_6.334320:1-459 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 47, Coverage: 12, minDepth: 5 [pilon] Confirmed 361 of 459 bases (78.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7221_length_459_cov_6.334320:1-459 [pilon] Processing NODE_15237_length_135_cov_50.857143:1-135 [pilon] NODE_1464_length_1276_cov_21.223377:1-1276 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 597, Coverage: 43, minDepth: 11 [pilon] Confirmed 1153 of 1276 bases (90.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1464_length_1276_cov_21.223377:1-1276 [pilon] Processing NODE_6762_length_485_cov_33.357143:1-485 [pilon] NODE_11682_length_257_cov_23.955882:1-257 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 61, Coverage: 4, minDepth: 5 [pilon] Confirmed 86 of 257 bases (33.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11682_length_257_cov_23.955882:1-257 [pilon] Processing NODE_7652_length_435_cov_16.391720:1-435 [pilon] NODE_5161_length_605_cov_6.045455:1-605 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 90, Coverage: 9, minDepth: 5 [pilon] Confirmed 382 of 605 bases (63.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5161_length_605_cov_6.045455:1-605 [pilon] Processing NODE_4824_length_632_cov_55.330724:1-632 [pilon] NODE_9723_length_336_cov_69.600000:1-336 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 328, Coverage: 51, minDepth: 13 [pilon] Confirmed 295 of 336 bases (87.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9723_length_336_cov_69.600000:1-336 [pilon] Processing NODE_12191_length_243_cov_37.081967:1-243 [pilon] NODE_3983_length_717_cov_0.822148:1-717 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 31, Coverage: 4, minDepth: 5 [pilon] Confirmed 320 of 717 bases (44.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3983_length_717_cov_0.822148:1-717 [pilon] Processing NODE_704_length_1702_cov_2.702087:1-1702 [pilon] NODE_12382_length_243_cov_31.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12382_length_243_cov_31.418033:1-243 [pilon] Processing NODE_2791_length_911_cov_0.605063:1-911 [pilon] NODE_7568_length_440_cov_1.702194:1-440 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 336 of 440 bases (76.36%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7568_length_440_cov_1.702194:1-440 [pilon] Processing NODE_12211_length_243_cov_36.336066:1-243 [pilon] NODE_4058_length_710_cov_12.210526:1-710 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 235, Coverage: 24, minDepth: 6 [pilon] Confirmed 560 of 710 bases (78.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4058_length_710_cov_12.210526:1-710 [pilon] Processing NODE_1538_length_1246_cov_27.416000:1-1246 [pilon] NODE_11323_length_270_cov_25.375839:1-270 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 82, Coverage: 5, minDepth: 5 [pilon] Confirmed 153 of 270 bases (56.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11323_length_270_cov_25.375839:1-270 [pilon] Processing NODE_11063_length_281_cov_5.425000:1-281 [pilon] NODE_15082_length_233_cov_6.892857:1-233 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 233 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15082_length_233_cov_6.892857:1-233 [pilon] Processing NODE_10959_length_285_cov_24.298780:1-285 [pilon] NODE_15139_length_198_cov_3.116883:1-198 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 198 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15139_length_198_cov_3.116883:1-198 [pilon] Processing NODE_5651_length_567_cov_3.486547:1-567 [pilon] NODE_6555_length_500_cov_11.678100:1-500 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 115, Coverage: 11, minDepth: 5 [pilon] Confirmed 281 of 500 bases (56.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6555_length_500_cov_11.678100:1-500 [pilon] Processing NODE_4179_length_696_cov_15.147826:1-696 [pilon] NODE_9809_length_333_cov_30.165094:1-333 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 159, Coverage: 7, minDepth: 5 [pilon] Confirmed 158 of 333 bases (47.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9809_length_333_cov_30.165094:1-333 [pilon] Processing NODE_5070_length_613_cov_10.495935:1-613 [pilon] NODE_6643_length_494_cov_65.493298:1-494 log: [pilon] frags shovill.bam: coverage 100 [pilon] Total Reads: 567, Coverage: 100, minDepth: 25 [pilon] Confirmed 441 of 494 bases (89.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6643_length_494_cov_65.493298:1-494 [pilon] NODE_5548_length_574_cov_1.962472:1-574 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 34, Coverage: 7, minDepth: 5 [pilon] Confirmed 415 of 574 bases (72.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5548_length_574_cov_1.962472:1-574 [pilon] Processing NODE_3087_length_856_cov_4.389116:1-856 [pilon] NODE_13553_length_243_cov_17.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13553_length_243_cov_17.918033:1-243 [pilon] Processing NODE_13525_length_243_cov_18.131148:1-243 [pilon] NODE_12107_length_243_cov_46.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12107_length_243_cov_46.877049:1-243 [pilon] Processing NODE_9298_length_354_cov_16.025751:1-354 [pilon] NODE_10537_length_303_cov_19.846154:1-303 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 74, Coverage: 8, minDepth: 5 [pilon] Confirmed 219 of 303 bases (72.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10537_length_303_cov_19.846154:1-303 [pilon] Processing NODE_9873_length_330_cov_31.411483:1-330 [pilon] NODE_6289_length_518_cov_44.659950:1-518 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 411, Coverage: 66, minDepth: 17 [pilon] Confirmed 425 of 518 bases (82.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6289_length_518_cov_44.659950:1-518 [pilon] Processing NODE_5523_length_575_cov_38.610132:1-575 [pilon] NODE_13898_length_243_cov_14.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13898_length_243_cov_14.926230:1-243 [pilon] Processing NODE_3078_length_858_cov_3.668928:1-858 [pilon] NODE_10788_length_294_cov_12.959538:1-294 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 49, Coverage: 2, minDepth: 5 [pilon] Confirmed 54 of 294 bases (18.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10788_length_294_cov_12.959538:1-294 [pilon] Processing NODE_11574_length_261_cov_20.121429:1-261 [pilon] NODE_12191_length_243_cov_37.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12191_length_243_cov_37.081967:1-243 [pilon] Processing NODE_6050_length_536_cov_2.773494:1-536 [pilon] NODE_8068_length_414_cov_58.747440:1-414 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 374, Coverage: 75, minDepth: 19 [pilon] Confirmed 358 of 414 bases (86.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8068_length_414_cov_58.747440:1-414 [pilon] Processing NODE_5051_length_615_cov_1.522267:1-615 [pilon] NODE_15237_length_135_cov_50.857143:1-135 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 135 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15237_length_135_cov_50.857143:1-135 [pilon] Processing NODE_1568_length_1231_cov_16.607207:1-1231 [pilon] NODE_4824_length_632_cov_55.330724:1-632 log: [pilon] frags shovill.bam: coverage 96 [pilon] Total Reads: 649, Coverage: 96, minDepth: 24 [pilon] Confirmed 578 of 632 bases (91.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4824_length_632_cov_55.330724:1-632 [pilon] Processing NODE_6151_length_528_cov_14.857494:1-528 [pilon] NODE_6762_length_485_cov_33.357143:1-485 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 289, Coverage: 39, minDepth: 10 [pilon] Confirmed 402 of 485 bases (82.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6762_length_485_cov_33.357143:1-485 [pilon] Processing NODE_15222_length_146_cov_12.400000:1-146 [pilon] NODE_7652_length_435_cov_16.391720:1-435 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 144, Coverage: 10, minDepth: 5 [pilon] Confirmed 179 of 435 bases (41.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7652_length_435_cov_16.391720:1-435 [pilon] Processing NODE_9875_length_330_cov_30.282297:1-330 [pilon] NODE_2158_length_1043_cov_1.779826:1-1043 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 56, Coverage: 6, minDepth: 5 [pilon] Confirmed 497 of 1043 bases (47.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2158_length_1043_cov_1.779826:1-1043 [pilon] Processing NODE_10336_length_312_cov_14.162304:1-312 [pilon] NODE_704_length_1702_cov_2.702087:1-1702 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 122, Coverage: 9, minDepth: 5 [pilon] Confirmed 1348 of 1702 bases (79.20%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_704_length_1702_cov_2.702087:1-1702 [pilon] Processing NODE_5352_length_588_cov_5.554604:1-588 [pilon] NODE_2654_length_937_cov_0.421569:1-937 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 9, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 937 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2654_length_937_cov_0.421569:1-937 [pilon] Processing NODE_14381_length_243_cov_11.213115:1-243 [pilon] NODE_2791_length_911_cov_0.605063:1-911 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 25, Coverage: 4, minDepth: 5 [pilon] Confirmed 289 of 911 bases (31.72%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2791_length_911_cov_0.605063:1-911 [pilon] Processing NODE_5358_length_588_cov_0.940043:1-588 [pilon] NODE_12211_length_243_cov_36.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 93, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12211_length_243_cov_36.336066:1-243 [pilon] NODE_11063_length_281_cov_5.425000:1-281 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 281 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11063_length_281_cov_5.425000:1-281 [pilon] Processing NODE_15056_length_240_cov_0.823529:1-240 [pilon] NODE_10959_length_285_cov_24.298780:1-285 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 97, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10959_length_285_cov_24.298780:1-285 [pilon] Processing NODE_3149_length_842_cov_15.375867:1-842 [pilon] NODE_5651_length_567_cov_3.486547:1-567 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 47, Coverage: 10, minDepth: 5 [pilon] Confirmed 471 of 567 bases (83.07%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5651_length_567_cov_3.486547:1-567 [pilon] Processing NODE_101_length_2985_cov_18.137919:1-2985 [pilon] NODE_3087_length_856_cov_4.389116:1-856 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 69, Coverage: 10, minDepth: 5 [pilon] Confirmed 453 of 856 bases (52.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3087_length_856_cov_4.389116:1-856 [pilon] Processing NODE_11081_length_280_cov_12.779874:1-280 [pilon] NODE_11574_length_261_cov_20.121429:1-261 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 62, Coverage: 4, minDepth: 5 [pilon] Confirmed 119 of 261 bases (45.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11574_length_261_cov_20.121429:1-261 [pilon] Processing NODE_10248_length_315_cov_12.943299:1-315 [pilon] NODE_6050_length_536_cov_2.773494:1-536 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 25, Coverage: 6, minDepth: 5 [pilon] Confirmed 297 of 536 bases (55.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6050_length_536_cov_2.773494:1-536 [pilon] Processing NODE_6386_length_511_cov_18.012821:1-511 [pilon] NODE_3078_length_858_cov_3.668928:1-858 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 71, Coverage: 10, minDepth: 5 [pilon] Confirmed 639 of 858 bases (74.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3078_length_858_cov_3.668928:1-858 [pilon] Processing NODE_9324_length_353_cov_42.737069:1-353 [pilon] NODE_1538_length_1246_cov_27.416000:1-1246 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 693, Coverage: 59, minDepth: 15 [pilon] Confirmed 981 of 1246 bases (78.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1538_length_1246_cov_27.416000:1-1246 [pilon] Processing NODE_10896_length_288_cov_21.586826:1-288 [pilon] NODE_10336_length_312_cov_14.162304:1-312 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 202 of 312 bases (64.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10336_length_312_cov_14.162304:1-312 [pilon] Processing NODE_2355_length_1000_cov_2.930603:1-1000 [pilon] NODE_9875_length_330_cov_30.282297:1-330 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 123, Coverage: 14, minDepth: 5 [pilon] Confirmed 240 of 330 bases (72.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9875_length_330_cov_30.282297:1-330 [pilon] Processing NODE_2721_length_925_cov_16.778607:1-925 [pilon] NODE_1568_length_1231_cov_16.607207:1-1231 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 447, Coverage: 27, minDepth: 7 [pilon] Confirmed 976 of 1231 bases (79.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1568_length_1231_cov_16.607207:1-1231 [pilon] Processing NODE_313_length_2215_cov_17.454632:1-2215 [pilon] NODE_5070_length_613_cov_10.495935:1-613 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 117, Coverage: 20, minDepth: 5 [pilon] Confirmed 550 of 613 bases (89.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5070_length_613_cov_10.495935:1-613 [pilon] Processing NODE_9983_length_327_cov_7.121359:1-327 [pilon] NODE_4179_length_696_cov_15.147826:1-696 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 216, Coverage: 20, minDepth: 5 [pilon] Confirmed 472 of 696 bases (67.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4179_length_696_cov_15.147826:1-696 [pilon] Processing NODE_3629_length_764_cov_21.860031:1-764 [pilon] NODE_13525_length_243_cov_18.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13525_length_243_cov_18.131148:1-243 [pilon] NODE_9873_length_330_cov_31.411483:1-330 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 116, Coverage: 5, minDepth: 5 [pilon] Confirmed 149 of 330 bases (45.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9873_length_330_cov_31.411483:1-330 [pilon] Processing NODE_3258_length_822_cov_21.231098:1-822 [pilon] Processing NODE_6486_length_504_cov_19.496084:1-504 [pilon] NODE_9298_length_354_cov_16.025751:1-354 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 72, Coverage: 11, minDepth: 5 [pilon] Confirmed 253 of 354 bases (71.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9298_length_354_cov_16.025751:1-354 [pilon] Processing NODE_10231_length_315_cov_29.654639:1-315 [pilon] NODE_5523_length_575_cov_38.610132:1-575 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 386, Coverage: 59, minDepth: 15 [pilon] Confirmed 496 of 575 bases (86.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5523_length_575_cov_38.610132:1-575 [pilon] NODE_14381_length_243_cov_11.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_5358_length_588_cov_0.940043:1-588 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 588 bases (21.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5358_length_588_cov_0.940043:1-588 [pilon] Finished processing NODE_14381_length_243_cov_11.213115:1-243 [pilon] Processing NODE_3980_length_717_cov_2.270134:1-717 [pilon] Processing NODE_7899_length_423_cov_7.261589:1-423 [pilon] Processing NODE_1532_length_1248_cov_26.233363:1-1248 [pilon] NODE_5051_length_615_cov_1.522267:1-615 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 409 of 615 bases (66.50%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5051_length_615_cov_1.522267:1-615 [pilon] Processing NODE_521_length_1896_cov_11.465352:1-1896 [pilon] NODE_6151_length_528_cov_14.857494:1-528 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 127, Coverage: 22, minDepth: 6 [pilon] Confirmed 417 of 528 bases (78.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6151_length_528_cov_14.857494:1-528 [pilon] Processing NODE_1661_length_1196_cov_10.862326:1-1196 [pilon] NODE_15222_length_146_cov_12.400000:1-146 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 146 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15222_length_146_cov_12.400000:1-146 [pilon] Processing NODE_1747_length_1162_cov_2.176753:1-1162 [pilon] NODE_5352_length_588_cov_5.554604:1-588 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 76, Coverage: 7, minDepth: 5 [pilon] Confirmed 381 of 588 bases (64.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5352_length_588_cov_5.554604:1-588 [pilon] Processing NODE_9024_length_365_cov_32.840164:1-365 [pilon] NODE_3149_length_842_cov_15.375867:1-842 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 267, Coverage: 26, minDepth: 7 [pilon] Confirmed 490 of 842 bases (58.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3149_length_842_cov_15.375867:1-842 [pilon] Processing NODE_8164_length_410_cov_29.487889:1-410 [pilon] NODE_9324_length_353_cov_42.737069:1-353 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 235, Coverage: 42, minDepth: 11 [pilon] Confirmed 331 of 353 bases (93.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9324_length_353_cov_42.737069:1-353 [pilon] Processing NODE_145_length_2758_cov_23.789154:1-2758 [pilon] NODE_10248_length_315_cov_12.943299:1-315 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 54, Coverage: 4, minDepth: 5 [pilon] Confirmed 142 of 315 bases (45.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10248_length_315_cov_12.943299:1-315 [pilon] Processing NODE_4112_length_704_cov_3.965695:1-704 [pilon] NODE_9983_length_327_cov_7.121359:1-327 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 35, Coverage: 3, minDepth: 5 [pilon] Confirmed 65 of 327 bases (19.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9983_length_327_cov_7.121359:1-327 [pilon] Processing NODE_6867_length_480_cov_5.821727:1-480 [pilon] NODE_2355_length_1000_cov_2.930603:1-1000 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 76, Coverage: 10, minDepth: 5 [pilon] Confirmed 687 of 1000 bases (68.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_6386_length_511_cov_18.012821:1-511 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 159, Coverage: 31, minDepth: 8 [pilon] Confirmed 408 of 511 bases (79.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6386_length_511_cov_18.012821:1-511 [pilon] Finished processing NODE_2355_length_1000_cov_2.930603:1-1000 [pilon] Processing NODE_9149_length_360_cov_10.158996:1-360 [pilon] Processing NODE_12888_length_243_cov_24.172131:1-243 [pilon] NODE_15056_length_240_cov_0.823529:1-240 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 240 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15056_length_240_cov_0.823529:1-240 [pilon] Processing NODE_8363_length_402_cov_13.914591:1-402 [pilon] NODE_2721_length_925_cov_16.778607:1-925 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 338, Coverage: 21, minDepth: 5 [pilon] Confirmed 676 of 925 bases (73.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2721_length_925_cov_16.778607:1-925 [pilon] Processing NODE_6726_length_489_cov_1.157609:1-489 [pilon] NODE_313_length_2215_cov_17.454632:1-2215 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 858, Coverage: 44, minDepth: 11 [pilon] Confirmed 1750 of 2215 bases (79.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_313_length_2215_cov_17.454632:1-2215 [pilon] Processing NODE_10857_length_290_cov_15.349112:1-290 [pilon] NODE_11081_length_280_cov_12.779874:1-280 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 280 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11081_length_280_cov_12.779874:1-280 [pilon] Processing NODE_216_length_2449_cov_30.600086:1-2449 [pilon] NODE_7899_length_423_cov_7.261589:1-423 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 46, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 423 bases (30.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7899_length_423_cov_7.261589:1-423 [pilon] Processing NODE_11887_length_249_cov_25.000000:1-249 [pilon] NODE_10896_length_288_cov_21.586826:1-288 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 87, Coverage: 6, minDepth: 5 [pilon] Confirmed 160 of 288 bases (55.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10896_length_288_cov_21.586826:1-288 [pilon] Processing NODE_13763_length_243_cov_15.934426:1-243 [pilon] NODE_3629_length_764_cov_21.860031:1-764 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 327, Coverage: 45, minDepth: 11 [pilon] Confirmed 586 of 764 bases (76.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3629_length_764_cov_21.860031:1-764 [pilon] Processing NODE_10599_length_301_cov_5.250000:1-301 [pilon] NODE_101_length_2985_cov_18.137919:1-2985 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 1262, Coverage: 55, minDepth: 14 [pilon] Confirmed 2303 of 2985 bases (77.15%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_101_length_2985_cov_18.137919:1-2985 [pilon] Processing NODE_7048_length_468_cov_14.533141:1-468 [pilon] NODE_3258_length_822_cov_21.231098:1-822 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 366, Coverage: 30, minDepth: 8 [pilon] Confirmed 718 of 822 bases (87.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3258_length_822_cov_21.231098:1-822 [pilon] Processing NODE_11697_length_256_cov_8.244444:1-256 [pilon] NODE_10231_length_315_cov_29.654639:1-315 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 123, Coverage: 12, minDepth: 5 [pilon] Confirmed 190 of 315 bases (60.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10231_length_315_cov_29.654639:1-315 [pilon] Processing NODE_6877_length_479_cov_13.301676:1-479 [pilon] NODE_3980_length_717_cov_2.270134:1-717 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 35, Coverage: 6, minDepth: 5 [pilon] Confirmed 477 of 717 bases (66.53%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3980_length_717_cov_2.270134:1-717 [pilon] Processing NODE_12038_length_246_cov_8.240000:1-246 [pilon] NODE_6486_length_504_cov_19.496084:1-504 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 174, Coverage: 23, minDepth: 6 [pilon] Confirmed 328 of 504 bases (65.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6486_length_504_cov_19.496084:1-504 [pilon] Processing NODE_12705_length_243_cov_26.122951:1-243 [pilon] NODE_4112_length_704_cov_3.965695:1-704 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 60, Coverage: 11, minDepth: 5 [pilon] Confirmed 613 of 704 bases (87.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4112_length_704_cov_3.965695:1-704 [pilon] Processing NODE_13512_length_243_cov_18.278689:1-243 [pilon] NODE_8164_length_410_cov_29.487889:1-410 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 191, Coverage: 21, minDepth: 5 [pilon] Confirmed 370 of 410 bases (90.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8164_length_410_cov_29.487889:1-410 [pilon] Processing NODE_864_length_1586_cov_17.154949:1-1586 [pilon] NODE_1532_length_1248_cov_26.233363:1-1248 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 706, Coverage: 62, minDepth: 16 [pilon] Confirmed 1170 of 1248 bases (93.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1532_length_1248_cov_26.233363:1-1248 [pilon] Processing NODE_2231_length_1025_cov_53.915929:1-1025 [pilon] NODE_521_length_1896_cov_11.465352:1-1896 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 508, Coverage: 30, minDepth: 8 [pilon] Confirmed 1326 of 1896 bases (69.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_521_length_1896_cov_11.465352:1-1896 [pilon] Processing NODE_3633_length_764_cov_1.040435:1-764 [pilon] NODE_1661_length_1196_cov_10.862326:1-1196 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 289, Coverage: 22, minDepth: 6 [pilon] Confirmed 868 of 1196 bases (72.58%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1661_length_1196_cov_10.862326:1-1196 [pilon] NODE_1747_length_1162_cov_2.176753:1-1162 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 78, Coverage: 9, minDepth: 5 [pilon] Confirmed 955 of 1162 bases (82.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1747_length_1162_cov_2.176753:1-1162 [pilon] Processing NODE_9198_length_357_cov_24.487288:1-357 [pilon] NODE_12888_length_243_cov_24.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12888_length_243_cov_24.172131:1-243 [pilon] NODE_9149_length_360_cov_10.158996:1-360 log: [pilon] Processing NODE_14503_length_243_cov_10.278689:1-243 [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 56, Coverage: 7, minDepth: 5 [pilon] Confirmed 205 of 360 bases (56.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9149_length_360_cov_10.158996:1-360 [pilon] Processing NODE_3568_length_774_cov_20.125574:1-774 [pilon] NODE_6867_length_480_cov_5.821727:1-480 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 269 of 480 bases (56.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6867_length_480_cov_5.821727:1-480 [pilon] Processing NODE_5383_length_585_cov_29.204741:1-585 [pilon] NODE_145_length_2758_cov_23.789154:1-2758 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 1486, Coverage: 48, minDepth: 12 [pilon] Confirmed 2423 of 2758 bases (87.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_145_length_2758_cov_23.789154:1-2758 [pilon] Processing NODE_11553_length_261_cov_45.400000:1-261 [pilon] NODE_9024_length_365_cov_32.840164:1-365 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 198, Coverage: 32, minDepth: 8 [pilon] Confirmed 337 of 365 bases (92.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9024_length_365_cov_32.840164:1-365 [pilon] Processing NODE_10621_length_300_cov_22.217877:1-300 [pilon] NODE_6726_length_489_cov_1.157609:1-489 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 146 of 489 bases (29.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6726_length_489_cov_1.157609:1-489 [pilon] Processing NODE_12912_length_243_cov_23.975410:1-243 [pilon] NODE_10857_length_290_cov_15.349112:1-290 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 63, Coverage: 6, minDepth: 5 [pilon] Confirmed 177 of 290 bases (61.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10857_length_290_cov_15.349112:1-290 [pilon] Processing NODE_12353_length_243_cov_32.024590:1-243 [pilon] NODE_11887_length_249_cov_25.000000:1-249 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 73, Coverage: 4, minDepth: 5 [pilon] Confirmed 118 of 249 bases (47.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11887_length_249_cov_25.000000:1-249 [pilon] Processing NODE_11728_length_255_cov_23.402985:1-255 [pilon] NODE_8363_length_402_cov_13.914591:1-402 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 88, Coverage: 8, minDepth: 5 [pilon] Confirmed 228 of 402 bases (56.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8363_length_402_cov_13.914591:1-402 [pilon] Processing NODE_10027_length_324_cov_22.068966:1-324 [pilon] NODE_6877_length_479_cov_13.301676:1-479 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 118, Coverage: 15, minDepth: 5 [pilon] Confirmed 346 of 479 bases (72.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6877_length_479_cov_13.301676:1-479 [pilon] Processing NODE_4159_length_697_cov_50.034722:1-697 [pilon] NODE_13763_length_243_cov_15.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13763_length_243_cov_15.934426:1-243 [pilon] Processing NODE_11634_length_258_cov_21.934307:1-258 [pilon] NODE_10599_length_301_cov_5.250000:1-301 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 35, Coverage: 4, minDepth: 5 [pilon] Confirmed 116 of 301 bases (38.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10599_length_301_cov_5.250000:1-301 [pilon] Processing NODE_5101_length_610_cov_16.858896:1-610 [pilon] NODE_7048_length_468_cov_14.533141:1-468 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 110, Coverage: 13, minDepth: 5 [pilon] Confirmed 292 of 468 bases (62.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7048_length_468_cov_14.533141:1-468 [pilon] Processing NODE_268_length_2296_cov_21.114023:1-2296 [pilon] NODE_14503_length_243_cov_10.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14503_length_243_cov_10.278689:1-243 [pilon] Processing NODE_11436_length_266_cov_15.662069:1-266 [pilon] NODE_3568_length_774_cov_20.125574:1-774 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 291, Coverage: 32, minDepth: 8 [pilon] Confirmed 613 of 774 bases (79.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3568_length_774_cov_20.125574:1-774 [pilon] Processing NODE_3088_length_855_cov_27.440054:1-855 [pilon] NODE_216_length_2449_cov_30.600086:1-2449 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 1764, Coverage: 59, minDepth: 15 [pilon] Confirmed 2191 of 2449 bases (89.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_216_length_2449_cov_30.600086:1-2449 [pilon] Processing NODE_258_length_2310_cov_21.137506:1-2310 [pilon] NODE_3633_length_764_cov_1.040435:1-764 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 32, Coverage: 5, minDepth: 5 [pilon] Confirmed 307 of 764 bases (40.18%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3633_length_764_cov_1.040435:1-764 [pilon] Processing NODE_11040_length_282_cov_12.944099:1-282 [pilon] NODE_12912_length_243_cov_23.975410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12912_length_243_cov_23.975410:1-243 [pilon] Processing NODE_8282_length_405_cov_16.651408:1-405 [pilon] NODE_12038_length_246_cov_8.240000:1-246 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12038_length_246_cov_8.240000:1-246 [pilon] Processing NODE_12909_length_243_cov_24.000000:1-243 [pilon] NODE_11553_length_261_cov_45.400000:1-261 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 135, Coverage: 13, minDepth: 5 [pilon] Confirmed 226 of 261 bases (86.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11553_length_261_cov_45.400000:1-261 [pilon] Processing NODE_12606_length_243_cov_27.500000:1-243 [pilon] NODE_13512_length_243_cov_18.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13512_length_243_cov_18.278689:1-243 [pilon] Processing NODE_15221_length_147_cov_15.884615:1-147 [pilon] NODE_11697_length_256_cov_8.244444:1-256 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 24, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 256 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11697_length_256_cov_8.244444:1-256 [pilon] Processing NODE_3411_length_797_cov_13.501479:1-797 [pilon] NODE_5383_length_585_cov_29.204741:1-585 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 297, Coverage: 48, minDepth: 12 [pilon] Confirmed 478 of 585 bases (81.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5383_length_585_cov_29.204741:1-585 [pilon] Processing NODE_3889_length_729_cov_9.228618:1-729 [pilon] NODE_9198_length_357_cov_24.487288:1-357 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 132, Coverage: 14, minDepth: 5 [pilon] Confirmed 224 of 357 bases (62.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9198_length_357_cov_24.487288:1-357 [pilon] NODE_864_length_1586_cov_17.154949:1-1586 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 607, Coverage: 37, minDepth: 9 [pilon] Confirmed 1312 of 1586 bases (82.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_864_length_1586_cov_17.154949:1-1586 [pilon] Processing NODE_1968_length_1094_cov_17.836588:1-1094 [pilon] Processing NODE_2250_length_1021_cov_2.028889:1-1021 [pilon] NODE_12705_length_243_cov_26.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12705_length_243_cov_26.122951:1-243 [pilon] Processing NODE_12337_length_243_cov_32.483607:1-243 [pilon] NODE_11728_length_255_cov_23.402985:1-255 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 72, Coverage: 6, minDepth: 5 [pilon] Confirmed 159 of 255 bases (62.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11728_length_255_cov_23.402985:1-255 [pilon] Processing NODE_8832_length_375_cov_19.476378:1-375 [pilon] NODE_2231_length_1025_cov_53.915929:1-1025 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 1202, Coverage: 77, minDepth: 19 [pilon] Confirmed 875 of 1025 bases (85.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2231_length_1025_cov_53.915929:1-1025 [pilon] Processing NODE_8350_length_402_cov_27.359431:1-402 [pilon] NODE_12353_length_243_cov_32.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12353_length_243_cov_32.024590:1-243 [pilon] Processing NODE_9982_length_327_cov_7.208738:1-327 [pilon] NODE_10621_length_300_cov_22.217877:1-300 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 63, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 300 bases (43.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10621_length_300_cov_22.217877:1-300 [pilon] Processing NODE_4197_length_694_cov_15.874346:1-694 [pilon] NODE_10027_length_324_cov_22.068966:1-324 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 92, Coverage: 2, minDepth: 5 [pilon] Confirmed 103 of 324 bases (31.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10027_length_324_cov_22.068966:1-324 [pilon] Processing NODE_12465_length_243_cov_29.672131:1-243 [pilon] NODE_11436_length_266_cov_15.662069:1-266 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 46, Coverage: 6, minDepth: 5 [pilon] Confirmed 163 of 266 bases (61.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11436_length_266_cov_15.662069:1-266 [pilon] Processing NODE_8915_length_370_cov_43.767068:1-370 [pilon] NODE_4159_length_697_cov_50.034722:1-697 log: [pilon] frags shovill.bam: coverage 93 [pilon] Total Reads: 644, Coverage: 93, minDepth: 23 [pilon] Confirmed 625 of 697 bases (89.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4159_length_697_cov_50.034722:1-697 [pilon] Processing NODE_10222_length_316_cov_11.364103:1-316 [pilon] NODE_11040_length_282_cov_12.944099:1-282 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 49, Coverage: 6, minDepth: 5 [pilon] Confirmed 177 of 282 bases (62.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11040_length_282_cov_12.944099:1-282 [pilon] Processing NODE_4835_length_632_cov_1.874755:1-632 [pilon] NODE_3088_length_855_cov_27.440054:1-855 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 448, Coverage: 45, minDepth: 11 [pilon] Confirmed 671 of 855 bases (78.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3088_length_855_cov_27.440054:1-855 [pilon] Processing NODE_7776_length_429_cov_1.665584:1-429 [pilon] NODE_8282_length_405_cov_16.651408:1-405 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 110, Coverage: 17, minDepth: 5 [pilon] Confirmed 290 of 405 bases (71.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8282_length_405_cov_16.651408:1-405 [pilon] Processing NODE_14341_length_243_cov_11.524590:1-243 [pilon] NODE_268_length_2296_cov_21.114023:1-2296 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 1180, Coverage: 60, minDepth: 15 [pilon] Confirmed 1755 of 2296 bases (76.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_268_length_2296_cov_21.114023:1-2296 [pilon] Processing NODE_7549_length_441_cov_11.221875:1-441 [pilon] NODE_5101_length_610_cov_16.858896:1-610 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 238, Coverage: 22, minDepth: 6 [pilon] Confirmed 531 of 610 bases (87.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5101_length_610_cov_16.858896:1-610 [pilon] Processing NODE_10647_length_300_cov_11.692737:1-300 [pilon] NODE_11634_length_258_cov_21.934307:1-258 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 72, Coverage: 4, minDepth: 5 [pilon] Confirmed 117 of 258 bases (45.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11634_length_258_cov_21.934307:1-258 [pilon] Processing NODE_2670_length_934_cov_8.569496:1-934 [pilon] NODE_1968_length_1094_cov_17.836588:1-1094 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 426, Coverage: 37, minDepth: 9 [pilon] Confirmed 967 of 1094 bases (88.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1968_length_1094_cov_17.836588:1-1094 [pilon] Processing NODE_13458_length_243_cov_18.778689:1-243 [pilon] NODE_8832_length_375_cov_19.476378:1-375 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 103, Coverage: 9, minDepth: 5 [pilon] Confirmed 199 of 375 bases (53.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8832_length_375_cov_19.476378:1-375 [pilon] Processing NODE_420_length_2011_cov_24.347090:1-2011 [pilon] NODE_3411_length_797_cov_13.501479:1-797 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 208, Coverage: 25, minDepth: 6 [pilon] Confirmed 736 of 797 bases (92.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3411_length_797_cov_13.501479:1-797 [pilon] Processing NODE_3160_length_840_cov_3.346314:1-840 [pilon] NODE_12465_length_243_cov_29.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 79, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12465_length_243_cov_29.672131:1-243 [pilon] Processing NODE_13318_length_243_cov_20.090164:1-243 [pilon] NODE_258_length_2310_cov_21.137506:1-2310 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 1165, Coverage: 49, minDepth: 12 [pilon] Confirmed 2065 of 2310 bases (89.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_258_length_2310_cov_21.137506:1-2310 [pilon] Processing NODE_11840_length_252_cov_10.786260:1-252 [pilon] NODE_15221_length_147_cov_15.884615:1-147 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 147 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15221_length_147_cov_15.884615:1-147 [pilon] Processing NODE_7401_length_448_cov_8.840979:1-448 [pilon] NODE_12606_length_243_cov_27.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12606_length_243_cov_27.500000:1-243 [pilon] Processing NODE_8065_length_415_cov_0.901361:1-415 [pilon] NODE_12909_length_243_cov_24.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12909_length_243_cov_24.000000:1-243 [pilon] Processing NODE_15152_length_189_cov_10.073529:1-189 [pilon] NODE_3889_length_729_cov_9.228618:1-729 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 137, Coverage: 20, minDepth: 5 [pilon] Confirmed 508 of 729 bases (69.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3889_length_729_cov_9.228618:1-729 [pilon] Processing NODE_2773_length_914_cov_2.094578:1-914 [pilon] NODE_2250_length_1021_cov_2.028889:1-1021 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 49, Coverage: 6, minDepth: 5 [pilon] Confirmed 542 of 1021 bases (53.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2250_length_1021_cov_2.028889:1-1021 [pilon] Processing NODE_8007_length_418_cov_1.636364:1-418 [pilon] NODE_10222_length_316_cov_11.364103:1-316 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 54, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 316 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10222_length_316_cov_11.364103:1-316 [pilon] Processing NODE_11241_length_273_cov_31.717105:1-273 [pilon] NODE_9982_length_327_cov_7.208738:1-327 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 26, Coverage: 2, minDepth: 5 [pilon] Confirmed 123 of 327 bases (37.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9982_length_327_cov_7.208738:1-327 [pilon] Processing NODE_10548_length_303_cov_14.609890:1-303 [pilon] NODE_8915_length_370_cov_43.767068:1-370 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 262, Coverage: 38, minDepth: 10 [pilon] Confirmed 336 of 370 bases (90.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8915_length_370_cov_43.767068:1-370 [pilon] Processing NODE_9434_length_348_cov_23.167401:1-348 [pilon] NODE_8350_length_402_cov_27.359431:1-402 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 181, Coverage: 31, minDepth: 8 [pilon] Confirmed 337 of 402 bases (83.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8350_length_402_cov_27.359431:1-402 [pilon] Processing NODE_8266_length_405_cov_41.862676:1-405 [pilon] NODE_12337_length_243_cov_32.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 74, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12337_length_243_cov_32.483607:1-243 [pilon] Processing NODE_1764_length_1157_cov_19.183398:1-1157 [pilon] NODE_7776_length_429_cov_1.665584:1-429 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 264 of 429 bases (61.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7776_length_429_cov_1.665584:1-429 [pilon] Processing NODE_14534_length_243_cov_10.008197:1-243 [pilon] NODE_4197_length_694_cov_15.874346:1-694 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 193, Coverage: 19, minDepth: 5 [pilon] Confirmed 559 of 694 bases (80.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4197_length_694_cov_15.874346:1-694 [pilon] Processing NODE_3347_length_806_cov_6.997080:1-806 [pilon] NODE_4835_length_632_cov_1.874755:1-632 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 281 of 632 bases (44.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4835_length_632_cov_1.874755:1-632 [pilon] Processing NODE_2762_length_916_cov_26.271698:1-916 [pilon] NODE_14341_length_243_cov_11.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14341_length_243_cov_11.524590:1-243 [pilon] Processing NODE_2011_length_1084_cov_1.477674:1-1084 [pilon] NODE_7549_length_441_cov_11.221875:1-441 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 65, Coverage: 4, minDepth: 5 [pilon] Confirmed 245 of 441 bases (55.56%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7549_length_441_cov_11.221875:1-441 [pilon] Processing NODE_5267_length_595_cov_11.748945:1-595 [pilon] NODE_10647_length_300_cov_11.692737:1-300 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 50, Coverage: 4, minDepth: 5 [pilon] Confirmed 142 of 300 bases (47.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10647_length_300_cov_11.692737:1-300 [pilon] Processing NODE_11544_length_262_cov_18.673759:1-262 [pilon] NODE_3160_length_840_cov_3.346314:1-840 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 65, Coverage: 9, minDepth: 5 [pilon] Confirmed 514 of 840 bases (61.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3160_length_840_cov_3.346314:1-840 [pilon] Processing NODE_1207_length_1390_cov_21.151300:1-1390 [pilon] NODE_420_length_2011_cov_24.347090:1-2011 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 1033, Coverage: 56, minDepth: 14 [pilon] Confirmed 1779 of 2011 bases (88.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_420_length_2011_cov_24.347090:1-2011 [pilon] Processing NODE_5995_length_541_cov_2.923810:1-541 [pilon] NODE_13318_length_243_cov_20.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13318_length_243_cov_20.090164:1-243 [pilon] Processing NODE_6016_length_539_cov_43.110048:1-539 [pilon] NODE_13458_length_243_cov_18.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13458_length_243_cov_18.778689:1-243 [pilon] Processing NODE_826_length_1611_cov_39.850336:1-1611 [pilon] NODE_2670_length_934_cov_8.569496:1-934 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 162, Coverage: 16, minDepth: 5 [pilon] Confirmed 681 of 934 bases (72.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2670_length_934_cov_8.569496:1-934 [pilon] Processing NODE_6102_length_532_cov_0.734793:1-532 [pilon] NODE_8007_length_418_cov_1.636364:1-418 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 232 of 418 bases (55.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8007_length_418_cov_1.636364:1-418 [pilon] Processing NODE_9857_length_332_cov_9.497630:1-332 [pilon] NODE_14534_length_243_cov_10.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14534_length_243_cov_10.008197:1-243 [pilon] Processing NODE_13502_length_243_cov_18.352459:1-243 [pilon] NODE_9434_length_348_cov_23.167401:1-348 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 133, Coverage: 3, minDepth: 5 [pilon] Confirmed 124 of 348 bases (35.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9434_length_348_cov_23.167401:1-348 [pilon] Processing NODE_11747_length_255_cov_18.768657:1-255 [pilon] NODE_8065_length_415_cov_0.901361:1-415 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 103 of 415 bases (24.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8065_length_415_cov_0.901361:1-415 [pilon] Processing NODE_5347_length_588_cov_27.850107:1-588 [pilon] NODE_11840_length_252_cov_10.786260:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11840_length_252_cov_10.786260:1-252 [pilon] Processing NODE_998_length_1496_cov_3.173818:1-1496 [pilon] NODE_2773_length_914_cov_2.094578:1-914 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 58, Coverage: 8, minDepth: 5 [pilon] Confirmed 549 of 914 bases (60.07%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2773_length_914_cov_2.094578:1-914 [pilon] Processing NODE_13577_length_243_cov_17.704918:1-243 [pilon] NODE_7401_length_448_cov_8.840979:1-448 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 61, Coverage: 17, minDepth: 5 [pilon] Confirmed 342 of 448 bases (76.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7401_length_448_cov_8.840979:1-448 [pilon] Processing NODE_4132_length_701_cov_1.865517:1-701 [pilon] NODE_2011_length_1084_cov_1.477674:1-1084 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 42, Coverage: 5, minDepth: 5 [pilon] Confirmed 448 of 1084 bases (41.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2011_length_1084_cov_1.477674:1-1084 [pilon] Processing NODE_1758_length_1158_cov_17.574735:1-1158 [pilon] NODE_15152_length_189_cov_10.073529:1-189 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 189 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15152_length_189_cov_10.073529:1-189 [pilon] Processing NODE_2504_length_966_cov_37.859172:1-966 [pilon] NODE_11241_length_273_cov_31.717105:1-273 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 86, Coverage: 9, minDepth: 5 [pilon] Confirmed 215 of 273 bases (78.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11241_length_273_cov_31.717105:1-273 [pilon] Processing NODE_1410_length_1295_cov_16.818569:1-1295 [pilon] NODE_5267_length_595_cov_11.748945:1-595 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 126, Coverage: 11, minDepth: 5 [pilon] Confirmed 363 of 595 bases (61.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5267_length_595_cov_11.748945:1-595 [pilon] Processing NODE_8383_length_401_cov_6.464286:1-401 [pilon] NODE_11544_length_262_cov_18.673759:1-262 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 56, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 262 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11544_length_262_cov_18.673759:1-262 [pilon] Processing NODE_10977_length_285_cov_16.365854:1-285 [pilon] NODE_10548_length_303_cov_14.609890:1-303 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 60, Coverage: 4, minDepth: 5 [pilon] Confirmed 142 of 303 bases (46.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10548_length_303_cov_14.609890:1-303 [pilon] Processing NODE_3024_length_868_cov_48.234270:1-868 [pilon] NODE_8266_length_405_cov_41.862676:1-405 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 264, Coverage: 35, minDepth: 9 [pilon] Confirmed 373 of 405 bases (92.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8266_length_405_cov_41.862676:1-405 [pilon] Processing NODE_5221_length_600_cov_1.098121:1-600 [pilon] NODE_3347_length_806_cov_6.997080:1-806 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 179, Coverage: 21, minDepth: 5 [pilon] Confirmed 646 of 806 bases (80.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3347_length_806_cov_6.997080:1-806 [pilon] Processing NODE_4008_length_715_cov_2.811448:1-715 [pilon] NODE_5995_length_541_cov_2.923810:1-541 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 37, Coverage: 9, minDepth: 5 [pilon] Confirmed 407 of 541 bases (75.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5995_length_541_cov_2.923810:1-541 [pilon] Processing NODE_5973_length_543_cov_16.030806:1-543 [pilon] NODE_2762_length_916_cov_26.271698:1-916 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 477, Coverage: 51, minDepth: 13 [pilon] Confirmed 857 of 916 bases (93.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2762_length_916_cov_26.271698:1-916 [pilon] Processing NODE_4972_length_620_cov_31.008016:1-620 [pilon] NODE_6016_length_539_cov_43.110048:1-539 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 446, Coverage: 48, minDepth: 12 [pilon] Confirmed 378 of 539 bases (70.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6016_length_539_cov_43.110048:1-539 [pilon] Processing NODE_3872_length_731_cov_23.514754:1-731 [pilon] NODE_1764_length_1157_cov_19.183398:1-1157 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 468, Coverage: 36, minDepth: 9 [pilon] Confirmed 979 of 1157 bases (84.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1764_length_1157_cov_19.183398:1-1157 [pilon] Processing NODE_1022_length_1485_cov_1.997067:1-1485 [pilon] NODE_1207_length_1390_cov_21.151300:1-1390 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 623, Coverage: 48, minDepth: 12 [pilon] Confirmed 1013 of 1390 bases (72.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1207_length_1390_cov_21.151300:1-1390 [pilon] Processing NODE_10809_length_292_cov_20.228070:1-292 [pilon] NODE_9857_length_332_cov_9.497630:1-332 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 41, Coverage: 3, minDepth: 5 [pilon] Confirmed 116 of 332 bases (34.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9857_length_332_cov_9.497630:1-332 [pilon] Processing NODE_4931_length_624_cov_2.019881:1-624 [pilon] NODE_13502_length_243_cov_18.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13502_length_243_cov_18.352459:1-243 [pilon] Processing NODE_12377_length_243_cov_31.491803:1-243 [pilon] NODE_11747_length_255_cov_18.768657:1-255 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 61, Coverage: 3, minDepth: 5 [pilon] Confirmed 24 of 255 bases (9.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11747_length_255_cov_18.768657:1-255 [pilon] Processing NODE_2607_length_945_cov_0.871359:1-945 [pilon] NODE_6102_length_532_cov_0.734793:1-532 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 532 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6102_length_532_cov_0.734793:1-532 [pilon] Processing NODE_14789_length_243_cov_7.786885:1-243 [pilon] NODE_8383_length_401_cov_6.464286:1-401 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 254 of 401 bases (63.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8383_length_401_cov_6.464286:1-401 [pilon] Processing NODE_7855_length_425_cov_1.138158:1-425 [pilon] NODE_1758_length_1158_cov_17.574735:1-1158 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 496, Coverage: 44, minDepth: 11 [pilon] Confirmed 1054 of 1158 bases (91.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1758_length_1158_cov_17.574735:1-1158 [pilon] Processing NODE_10920_length_288_cov_10.371257:1-288 [pilon] NODE_826_length_1611_cov_39.850336:1-1611 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 1462, Coverage: 81, minDepth: 20 [pilon] Confirmed 1334 of 1611 bases (82.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_826_length_1611_cov_39.850336:1-1611 [pilon] NODE_10977_length_285_cov_16.365854:1-285 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_2166_length_1042_cov_1.550489:1-1042 [pilon] Finished processing NODE_10977_length_285_cov_16.365854:1-285 [pilon] Processing NODE_6970_length_473_cov_34.036932:1-473 [pilon] NODE_4972_length_620_cov_31.008016:1-620 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 363, Coverage: 55, minDepth: 14 [pilon] Confirmed 538 of 620 bases (86.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4972_length_620_cov_31.008016:1-620 [pilon] Processing NODE_3479_length_788_cov_3.347826:1-788 [pilon] NODE_5347_length_588_cov_27.850107:1-588 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 290, Coverage: 45, minDepth: 11 [pilon] Confirmed 495 of 588 bases (84.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5347_length_588_cov_27.850107:1-588 [pilon] Processing NODE_5006_length_618_cov_2.893360:1-618 [pilon] NODE_998_length_1496_cov_3.173818:1-1496 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 109, Coverage: 9, minDepth: 5 [pilon] Confirmed 1163 of 1496 bases (77.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_998_length_1496_cov_3.173818:1-1496 [pilon] Processing NODE_14752_length_243_cov_8.098361:1-243 [pilon] NODE_10809_length_292_cov_20.228070:1-292 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 67, Coverage: 16, minDepth: 5 [pilon] Confirmed 253 of 292 bases (86.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10809_length_292_cov_20.228070:1-292 [pilon] Processing NODE_9629_length_340_cov_29.684932:1-340 [pilon] NODE_5973_length_543_cov_16.030806:1-543 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 185, Coverage: 22, minDepth: 6 [pilon] Confirmed 368 of 543 bases (67.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5973_length_543_cov_16.030806:1-543 [pilon] Processing NODE_7866_length_424_cov_14.214521:1-424 [pilon] NODE_3872_length_731_cov_23.514754:1-731 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 330, Coverage: 26, minDepth: 7 [pilon] Confirmed 499 of 731 bases (68.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3872_length_731_cov_23.514754:1-731 [pilon] Processing NODE_378_length_2080_cov_23.568657:1-2080 [pilon] NODE_13577_length_243_cov_17.704918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13577_length_243_cov_17.704918:1-243 [pilon] Processing NODE_8790_length_378_cov_11.622568:1-378 [pilon] NODE_4132_length_701_cov_1.865517:1-701 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 31, Coverage: 5, minDepth: 5 [pilon] Confirmed 311 of 701 bases (44.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4132_length_701_cov_1.865517:1-701 [pilon] Processing NODE_3675_length_759_cov_1.355799:1-759 [pilon] NODE_1410_length_1295_cov_16.818569:1-1295 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 419, Coverage: 27, minDepth: 7 [pilon] Confirmed 1017 of 1295 bases (78.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1410_length_1295_cov_16.818569:1-1295 [pilon] Processing NODE_10268_length_315_cov_7.201031:1-315 [pilon] NODE_2504_length_966_cov_37.859172:1-966 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 732, Coverage: 79, minDepth: 20 [pilon] Confirmed 832 of 966 bases (86.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2504_length_966_cov_37.859172:1-966 [pilon] Processing NODE_8698_length_382_cov_25.632184:1-382 [pilon] NODE_5221_length_600_cov_1.098121:1-600 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 311 of 600 bases (51.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5221_length_600_cov_1.098121:1-600 [pilon] Processing NODE_9624_length_340_cov_66.164384:1-340 [pilon] NODE_4931_length_624_cov_2.019881:1-624 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 33, Coverage: 7, minDepth: 5 [pilon] Confirmed 403 of 624 bases (64.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4931_length_624_cov_2.019881:1-624 [pilon] Processing NODE_97_length_3034_cov_19.731205:1-3034 [pilon] Processing NODE_12321_length_243_cov_32.680328:1-243 [pilon] NODE_12377_length_243_cov_31.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12377_length_243_cov_31.491803:1-243 [pilon] Processing NODE_14230_length_243_cov_12.352459:1-243 [pilon] NODE_3024_length_868_cov_48.234270:1-868 log: [pilon] frags shovill.bam: coverage 91 [pilon] Total Reads: 785, Coverage: 91, minDepth: 23 [pilon] Confirmed 787 of 868 bases (90.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3024_length_868_cov_48.234270:1-868 [pilon] Processing NODE_6974_length_473_cov_20.156250:1-473 [pilon] NODE_4008_length_715_cov_2.811448:1-715 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 57, Coverage: 9, minDepth: 5 [pilon] Confirmed 484 of 715 bases (67.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4008_length_715_cov_2.811448:1-715 [pilon] Processing NODE_7977_length_419_cov_22.318792:1-419 [pilon] NODE_2607_length_945_cov_0.871359:1-945 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 29, Coverage: 4, minDepth: 5 [pilon] Confirmed 331 of 945 bases (35.03%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2607_length_945_cov_0.871359:1-945 [pilon] Processing NODE_2311_length_1008_cov_8.768884:1-1008 [pilon] NODE_7855_length_425_cov_1.138158:1-425 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 13, Coverage: 4, minDepth: 5 [pilon] Confirmed 119 of 425 bases (28.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7855_length_425_cov_1.138158:1-425 [pilon] Processing NODE_1312_length_1335_cov_22.188633:1-1335 [pilon] NODE_1022_length_1485_cov_1.997067:1-1485 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 83, Coverage: 7, minDepth: 5 [pilon] Confirmed 889 of 1485 bases (59.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1022_length_1485_cov_1.997067:1-1485 [pilon] Processing NODE_5284_length_594_cov_3.564482:1-594 [pilon] NODE_6970_length_473_cov_34.036932:1-473 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 272, Coverage: 44, minDepth: 11 [pilon] Confirmed 354 of 473 bases (74.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6970_length_473_cov_34.036932:1-473 [pilon] Processing NODE_2966_length_880_cov_10.297760:1-880 [pilon] NODE_10920_length_288_cov_10.371257:1-288 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 288 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10920_length_288_cov_10.371257:1-288 [pilon] Processing NODE_8332_length_403_cov_2.556738:1-403 [pilon] NODE_3479_length_788_cov_3.347826:1-788 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 54, Coverage: 9, minDepth: 5 [pilon] Confirmed 549 of 788 bases (69.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3479_length_788_cov_3.347826:1-788 [pilon] Processing NODE_13492_length_243_cov_18.418033:1-243 [pilon] NODE_7866_length_424_cov_14.214521:1-424 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 101, Coverage: 15, minDepth: 5 [pilon] Confirmed 331 of 424 bases (78.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7866_length_424_cov_14.214521:1-424 [pilon] Processing NODE_1554_length_1239_cov_3.400716:1-1239 [pilon] NODE_378_length_2080_cov_23.568657:1-2080 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 865, Coverage: 30, minDepth: 8 [pilon] Confirmed 1548 of 2080 bases (74.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_378_length_2080_cov_23.568657:1-2080 [pilon] Processing NODE_2880_length_896_cov_16.821935:1-896 [pilon] NODE_14789_length_243_cov_7.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14789_length_243_cov_7.786885:1-243 [pilon] Processing NODE_1054_length_1463_cov_17.199702:1-1463 [pilon] NODE_2166_length_1042_cov_1.550489:1-1042 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 42, Coverage: 5, minDepth: 5 [pilon] Confirmed 553 of 1042 bases (53.07%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2166_length_1042_cov_1.550489:1-1042 [pilon] Processing NODE_322_length_2187_cov_1.195063:1-2187 [pilon] NODE_5006_length_618_cov_2.893360:1-618 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 33, Coverage: 6, minDepth: 5 [pilon] Confirmed 280 of 618 bases (45.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5006_length_618_cov_2.893360:1-618 [pilon] Processing NODE_6312_length_517_cov_0.800505:1-517 [pilon] NODE_9629_length_340_cov_29.684932:1-340 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 150, Coverage: 20, minDepth: 5 [pilon] Confirmed 305 of 340 bases (89.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9629_length_340_cov_29.684932:1-340 [pilon] Processing NODE_9532_length_345_cov_12.080357:1-345 [pilon] NODE_14230_length_243_cov_12.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14230_length_243_cov_12.352459:1-243 [pilon] Processing NODE_2733_length_921_cov_28.496250:1-921 [pilon] NODE_14752_length_243_cov_8.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14752_length_243_cov_8.098361:1-243 [pilon] Processing NODE_2798_length_909_cov_17.642132:1-909 [pilon] NODE_2311_length_1008_cov_8.768884:1-1008 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 228, Coverage: 19, minDepth: 5 [pilon] Confirmed 866 of 1008 bases (85.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2311_length_1008_cov_8.768884:1-1008 [pilon] Processing NODE_3386_length_800_cov_1.232695:1-800 [pilon] NODE_97_length_3034_cov_19.731205:1-3034 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 1271, Coverage: 54, minDepth: 14 [pilon] Confirmed 2662 of 3034 bases (87.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_97_length_3034_cov_19.731205:1-3034 [pilon] Processing NODE_13517_length_243_cov_18.229508:1-243 [pilon] NODE_8790_length_378_cov_11.622568:1-378 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 63, Coverage: 7, minDepth: 5 [pilon] Confirmed 197 of 378 bases (52.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8790_length_378_cov_11.622568:1-378 [pilon] Processing NODE_2192_length_1036_cov_31.968306:1-1036 [pilon] NODE_10268_length_315_cov_7.201031:1-315 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 32, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10268_length_315_cov_7.201031:1-315 [pilon] Processing NODE_2746_length_919_cov_1.720551:1-919 [pilon] NODE_3675_length_759_cov_1.355799:1-759 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 48, Coverage: 6, minDepth: 5 [pilon] Confirmed 390 of 759 bases (51.38%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3675_length_759_cov_1.355799:1-759 [pilon] Processing NODE_7555_length_441_cov_0.884375:1-441 [pilon] NODE_8698_length_382_cov_25.632184:1-382 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 150, Coverage: 24, minDepth: 6 [pilon] Confirmed 296 of 382 bases (77.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8698_length_382_cov_25.632184:1-382 [pilon] Processing NODE_10328_length_312_cov_19.675393:1-312 [pilon] NODE_9624_length_340_cov_66.164384:1-340 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 340, Coverage: 51, minDepth: 13 [pilon] Confirmed 295 of 340 bases (86.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9624_length_340_cov_66.164384:1-340 [pilon] Processing NODE_12498_length_243_cov_29.155738:1-243 [pilon] NODE_1312_length_1335_cov_22.188633:1-1335 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 603, Coverage: 51, minDepth: 13 [pilon] Confirmed 1122 of 1335 bases (84.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1312_length_1335_cov_22.188633:1-1335 [pilon] Processing NODE_9303_length_354_cov_14.961373:1-354 [pilon] NODE_8332_length_403_cov_2.556738:1-403 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 19, Coverage: 5, minDepth: 5 [pilon] Confirmed 302 of 403 bases (74.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8332_length_403_cov_2.556738:1-403 [pilon] Processing NODE_10892_length_288_cov_23.964072:1-288 [pilon] NODE_6974_length_473_cov_20.156250:1-473 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 176, Coverage: 11, minDepth: 5 [pilon] Confirmed 291 of 473 bases (61.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6974_length_473_cov_20.156250:1-473 [pilon] Processing NODE_7974_length_419_cov_30.134228:1-419 [pilon] NODE_2966_length_880_cov_10.297760:1-880 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 206, Coverage: 12, minDepth: 5 [pilon] Confirmed 493 of 880 bases (56.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2966_length_880_cov_10.297760:1-880 [pilon] Processing NODE_2248_length_1021_cov_2.616667:1-1021 [pilon] NODE_7977_length_419_cov_22.318792:1-419 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 164, Coverage: 13, minDepth: 5 [pilon] Confirmed 388 of 419 bases (92.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7977_length_419_cov_22.318792:1-419 [pilon] Processing NODE_8935_length_369_cov_20.100806:1-369 [pilon] NODE_12321_length_243_cov_32.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12321_length_243_cov_32.680328:1-243 [pilon] Processing NODE_4865_length_629_cov_27.177165:1-629 [pilon] NODE_13492_length_243_cov_18.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13492_length_243_cov_18.418033:1-243 [pilon] Processing NODE_7485_length_444_cov_1.665635:1-444 [pilon] NODE_1554_length_1239_cov_3.400716:1-1239 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 95, Coverage: 10, minDepth: 5 [pilon] Confirmed 911 of 1239 bases (73.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1554_length_1239_cov_3.400716:1-1239 [pilon] Processing NODE_7912_length_422_cov_29.189369:1-422 [pilon] NODE_2880_length_896_cov_16.821935:1-896 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 310, Coverage: 31, minDepth: 8 [pilon] Confirmed 823 of 896 bases (91.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2880_length_896_cov_16.821935:1-896 [pilon] Processing NODE_9311_length_354_cov_10.206009:1-354 [pilon] NODE_5284_length_594_cov_3.564482:1-594 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 44, Coverage: 9, minDepth: 5 [pilon] Confirmed 389 of 594 bases (65.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5284_length_594_cov_3.564482:1-594 [pilon] Processing NODE_8578_length_389_cov_51.514925:1-389 [pilon] NODE_2733_length_921_cov_28.496250:1-921 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 533, Coverage: 37, minDepth: 9 [pilon] Confirmed 649 of 921 bases (70.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2733_length_921_cov_28.496250:1-921 [pilon] Processing NODE_1940_length_1101_cov_2.641837:1-1101 [pilon] NODE_3386_length_800_cov_1.232695:1-800 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 33, Coverage: 5, minDepth: 5 [pilon] Confirmed 390 of 800 bases (48.75%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3386_length_800_cov_1.232695:1-800 [pilon] Processing NODE_3389_length_799_cov_14.280236:1-799 [pilon] NODE_1054_length_1463_cov_17.199702:1-1463 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 704, Coverage: 56, minDepth: 14 [pilon] Confirmed 1228 of 1463 bases (83.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1054_length_1463_cov_17.199702:1-1463 [pilon] Processing NODE_5281_length_594_cov_8.896406:1-594 [pilon] NODE_322_length_2187_cov_1.195063:1-2187 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 88, Coverage: 5, minDepth: 5 [pilon] Confirmed 1289 of 2187 bases (58.94%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_322_length_2187_cov_1.195063:1-2187 [pilon] Processing NODE_4781_length_637_cov_0.763566:1-637 [pilon] NODE_10892_length_288_cov_23.964072:1-288 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 87, Coverage: 3, minDepth: 5 [pilon] Confirmed 102 of 288 bases (35.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10892_length_288_cov_23.964072:1-288 [pilon] Processing NODE_10496_length_305_cov_11.081522:1-305 [pilon] NODE_2248_length_1021_cov_2.616667:1-1021 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 73, Coverage: 9, minDepth: 5 [pilon] Confirmed 793 of 1021 bases (77.67%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2248_length_1021_cov_2.616667:1-1021 [pilon] Processing NODE_12581_length_243_cov_27.737705:1-243 [pilon] NODE_9303_length_354_cov_14.961373:1-354 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 88, Coverage: 8, minDepth: 5 [pilon] Confirmed 220 of 354 bases (62.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9303_length_354_cov_14.961373:1-354 [pilon] Processing NODE_9535_length_345_cov_11.580357:1-345 [pilon] NODE_7974_length_419_cov_30.134228:1-419 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 209, Coverage: 34, minDepth: 9 [pilon] Confirmed 362 of 419 bases (86.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7974_length_419_cov_30.134228:1-419 [pilon] Processing NODE_12759_length_243_cov_25.450820:1-243 [pilon] NODE_9532_length_345_cov_12.080357:1-345 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 62, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 345 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9532_length_345_cov_12.080357:1-345 [pilon] Processing NODE_13843_length_243_cov_15.336066:1-243 [pilon] NODE_6312_length_517_cov_0.800505:1-517 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 517 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6312_length_517_cov_0.800505:1-517 [pilon] Processing NODE_12517_length_243_cov_28.811475:1-243 [pilon] NODE_2798_length_909_cov_17.642132:1-909 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 328, Coverage: 21, minDepth: 5 [pilon] Confirmed 695 of 909 bases (76.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2798_length_909_cov_17.642132:1-909 [pilon] Processing NODE_3435_length_793_cov_38.099702:1-793 [pilon] NODE_13517_length_243_cov_18.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13517_length_243_cov_18.229508:1-243 [pilon] Processing NODE_9804_length_334_cov_6.032864:1-334 [pilon] NODE_7555_length_441_cov_0.884375:1-441 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 41 of 441 bases (9.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7555_length_441_cov_0.884375:1-441 [pilon] Processing NODE_10583_length_302_cov_15.248619:1-302 [pilon] NODE_7485_length_444_cov_1.665635:1-444 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 70 of 444 bases (15.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7485_length_444_cov_1.665635:1-444 [pilon] Processing NODE_11465_length_264_cov_22.790210:1-264 [pilon] NODE_10328_length_312_cov_19.675393:1-312 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 80, Coverage: 13, minDepth: 5 [pilon] Confirmed 256 of 312 bases (82.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10328_length_312_cov_19.675393:1-312 [pilon] Processing NODE_1737_length_1167_cov_2.779159:1-1167 [pilon] NODE_7912_length_422_cov_29.189369:1-422 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 181, Coverage: 28, minDepth: 7 [pilon] Confirmed 333 of 422 bases (78.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7912_length_422_cov_29.189369:1-422 [pilon] Processing NODE_6100_length_532_cov_4.413625:1-532 [pilon] NODE_2746_length_919_cov_1.720551:1-919 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 45, Coverage: 6, minDepth: 5 [pilon] Confirmed 421 of 919 bases (45.81%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2746_length_919_cov_1.720551:1-919 [pilon] Processing NODE_12992_length_243_cov_23.024590:1-243 [pilon] NODE_9311_length_354_cov_10.206009:1-354 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 354 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9311_length_354_cov_10.206009:1-354 [pilon] Processing NODE_13152_length_243_cov_21.508197:1-243 [pilon] NODE_12498_length_243_cov_29.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12498_length_243_cov_29.155738:1-243 [pilon] Processing NODE_698_length_1706_cov_1.511041:1-1706 [pilon] NODE_2192_length_1036_cov_31.968306:1-1036 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 727, Coverage: 68, minDepth: 17 [pilon] Confirmed 942 of 1036 bases (90.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2192_length_1036_cov_31.968306:1-1036 [pilon] Processing NODE_14452_length_243_cov_10.672131:1-243 [pilon] NODE_8935_length_369_cov_20.100806:1-369 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 96, Coverage: 12, minDepth: 5 [pilon] Confirmed 273 of 369 bases (73.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8935_length_369_cov_20.100806:1-369 [pilon] Processing NODE_3619_length_766_cov_9.871318:1-766 [pilon] NODE_1940_length_1101_cov_2.641837:1-1101 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 65, Coverage: 7, minDepth: 5 [pilon] Confirmed 742 of 1101 bases (67.39%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1940_length_1101_cov_2.641837:1-1101 [pilon] Processing NODE_2183_length_1038_cov_23.488550:1-1038 [pilon] NODE_4865_length_629_cov_27.177165:1-629 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 354, Coverage: 56, minDepth: 14 [pilon] Confirmed 502 of 629 bases (79.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4865_length_629_cov_27.177165:1-629 [pilon] Processing NODE_11298_length_272_cov_23.172185:1-272 [pilon] NODE_3389_length_799_cov_14.280236:1-799 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 207, Coverage: 34, minDepth: 9 [pilon] Confirmed 454 of 799 bases (56.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3389_length_799_cov_14.280236:1-799 [pilon] Processing NODE_12245_length_243_cov_34.778689:1-243 [pilon] NODE_12759_length_243_cov_25.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12759_length_243_cov_25.450820:1-243 [pilon] Processing NODE_6183_length_525_cov_54.044554:1-525 [pilon] NODE_12581_length_243_cov_27.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12581_length_243_cov_27.737705:1-243 [pilon] Processing NODE_9572_length_342_cov_29.542986:1-342 [pilon] NODE_9535_length_345_cov_11.580357:1-345 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 34, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 345 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9535_length_345_cov_11.580357:1-345 [pilon] Processing NODE_7084_length_466_cov_0.779710:1-466 [pilon] NODE_8578_length_389_cov_51.514925:1-389 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 312, Coverage: 60, minDepth: 15 [pilon] Confirmed 332 of 389 bases (85.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8578_length_389_cov_51.514925:1-389 [pilon] Processing NODE_4325_length_678_cov_3.971275:1-678 [pilon] NODE_10496_length_305_cov_11.081522:1-305 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 49, Coverage: 4, minDepth: 5 [pilon] Confirmed 129 of 305 bases (42.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10496_length_305_cov_11.081522:1-305 [pilon] Processing NODE_15005_length_243_cov_5.360656:1-243 [pilon] NODE_11465_length_264_cov_22.790210:1-264 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 74, Coverage: 5, minDepth: 5 [pilon] Confirmed 148 of 264 bases (56.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11465_length_264_cov_22.790210:1-264 [pilon] Processing NODE_4932_length_624_cov_1.622266:1-624 [pilon] NODE_4781_length_637_cov_0.763566:1-637 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 21, Coverage: 3, minDepth: 5 [pilon] Confirmed 128 of 637 bases (20.09%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4781_length_637_cov_0.763566:1-637 [pilon] NODE_5281_length_594_cov_8.896406:1-594 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 96, Coverage: 16, minDepth: 5 [pilon] Confirmed 491 of 594 bases (82.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5281_length_594_cov_8.896406:1-594 [pilon] Processing NODE_7414_length_447_cov_20.524540:1-447 [pilon] NODE_6100_length_532_cov_4.413625:1-532 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 39, Coverage: 8, minDepth: 5 [pilon] Confirmed 409 of 532 bases (76.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6100_length_532_cov_4.413625:1-532 [pilon] Processing NODE_11079_length_280_cov_13.528302:1-280 [pilon] NODE_13843_length_243_cov_15.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13843_length_243_cov_15.336066:1-243 [pilon] Processing NODE_9127_length_360_cov_19.435146:1-360 [pilon] NODE_12517_length_243_cov_28.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12517_length_243_cov_28.811475:1-243 [pilon] Processing NODE_9429_length_348_cov_33.779736:1-348 [pilon] NODE_13152_length_243_cov_21.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13152_length_243_cov_21.508197:1-243 [pilon] Processing NODE_136_length_2798_cov_15.769145:1-2798 [pilon] NODE_12992_length_243_cov_23.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12992_length_243_cov_23.024590:1-243 [pilon] Processing NODE_2178_length_1039_cov_16.369281:1-1039 [pilon] NODE_14452_length_243_cov_10.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14452_length_243_cov_10.672131:1-243 [pilon] Processing NODE_14026_length_243_cov_14.008197:1-243 [pilon] NODE_698_length_1706_cov_1.511041:1-1706 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 71, Coverage: 5, minDepth: 5 [pilon] Confirmed 873 of 1706 bases (51.17%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_698_length_1706_cov_1.511041:1-1706 [pilon] Processing NODE_9746_length_336_cov_18.358140:1-336 [pilon] NODE_2183_length_1038_cov_23.488550:1-1038 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 611, Coverage: 63, minDepth: 16 [pilon] Confirmed 834 of 1038 bases (80.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2183_length_1038_cov_23.488550:1-1038 [pilon] Processing NODE_6142_length_529_cov_0.656863:1-529 [pilon] NODE_10583_length_302_cov_15.248619:1-302 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 68, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 302 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10583_length_302_cov_15.248619:1-302 [pilon] Processing NODE_4447_length_666_cov_16.045872:1-666 [pilon] NODE_3435_length_793_cov_38.099702:1-793 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 550, Coverage: 75, minDepth: 19 [pilon] Confirmed 720 of 793 bases (90.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3435_length_793_cov_38.099702:1-793 [pilon] Processing NODE_14472_length_243_cov_10.491803:1-243 [pilon] NODE_9804_length_334_cov_6.032864:1-334 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 32, Coverage: 5, minDepth: 5 [pilon] Confirmed 212 of 334 bases (63.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9804_length_334_cov_6.032864:1-334 [pilon] Processing NODE_75_length_3253_cov_2.180396:1-3253 [pilon] NODE_12245_length_243_cov_34.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 94, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12245_length_243_cov_34.778689:1-243 [pilon] Processing NODE_11693_length_256_cov_30.948148:1-256 [pilon] NODE_1737_length_1167_cov_2.779159:1-1167 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 90, Coverage: 10, minDepth: 5 [pilon] Confirmed 806 of 1167 bases (69.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1737_length_1167_cov_2.779159:1-1167 [pilon] Processing NODE_7736_length_430_cov_43.822006:1-430 [pilon] NODE_7084_length_466_cov_0.779710:1-466 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 1 of 466 bases (0.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7084_length_466_cov_0.779710:1-466 [pilon] Processing NODE_1777_length_1154_cov_11.997096:1-1154 [pilon] NODE_3619_length_766_cov_9.871318:1-766 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 174, Coverage: 13, minDepth: 5 [pilon] Confirmed 364 of 766 bases (47.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3619_length_766_cov_9.871318:1-766 [pilon] Processing NODE_3259_length_822_cov_18.814551:1-822 [pilon] NODE_9572_length_342_cov_29.542986:1-342 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 145, Coverage: 6, minDepth: 5 [pilon] Confirmed 151 of 342 bases (44.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9572_length_342_cov_29.542986:1-342 [pilon] Processing NODE_647_length_1752_cov_10.493562:1-1752 [pilon] NODE_6183_length_525_cov_54.044554:1-525 log: [pilon] frags shovill.bam: coverage 87 [pilon] Total Reads: 499, Coverage: 87, minDepth: 22 [pilon] Confirmed 442 of 525 bases (84.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6183_length_525_cov_54.044554:1-525 [pilon] Processing NODE_1263_length_1357_cov_23.701456:1-1357 [pilon] NODE_11298_length_272_cov_23.172185:1-272 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 79, Coverage: 7, minDepth: 5 [pilon] Confirmed 192 of 272 bases (70.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11298_length_272_cov_23.172185:1-272 [pilon] Processing NODE_6881_length_479_cov_6.891061:1-479 [pilon] NODE_4932_length_624_cov_1.622266:1-624 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 19, Coverage: 4, minDepth: 5 [pilon] Confirmed 173 of 624 bases (27.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4932_length_624_cov_1.622266:1-624 [pilon] Processing NODE_9721_length_337_cov_8.759259:1-337 [pilon] NODE_4325_length_678_cov_3.971275:1-678 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 44, Coverage: 8, minDepth: 5 [pilon] Confirmed 404 of 678 bases (59.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4325_length_678_cov_3.971275:1-678 [pilon] Processing NODE_12902_length_243_cov_24.057377:1-243 [pilon] NODE_15005_length_243_cov_5.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15005_length_243_cov_5.360656:1-243 [pilon] Processing NODE_14048_length_243_cov_13.852459:1-243 [pilon] NODE_2178_length_1039_cov_16.369281:1-1039 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 372, Coverage: 30, minDepth: 8 [pilon] Confirmed 843 of 1039 bases (81.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2178_length_1039_cov_16.369281:1-1039 [pilon] Processing NODE_8127_length_411_cov_47.434483:1-411 [pilon] NODE_14026_length_243_cov_14.008197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14026_length_243_cov_14.008197:1-243 [pilon] Processing NODE_14910_length_243_cov_6.573770:1-243 [pilon] NODE_6142_length_529_cov_0.656863:1-529 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 69 of 529 bases (13.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6142_length_529_cov_0.656863:1-529 [pilon] Processing NODE_5923_length_546_cov_12.383529:1-546 [pilon] NODE_9746_length_336_cov_18.358140:1-336 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 50, Coverage: 2, minDepth: 5 [pilon] Confirmed 80 of 336 bases (23.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9746_length_336_cov_18.358140:1-336 [pilon] Processing NODE_4087_length_706_cov_34.076923:1-706 [pilon] NODE_11693_length_256_cov_30.948148:1-256 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 79, Coverage: 9, minDepth: 5 [pilon] Confirmed 209 of 256 bases (81.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11693_length_256_cov_30.948148:1-256 [pilon] Processing NODE_850_length_1597_cov_27.157182:1-1597 [pilon] NODE_11079_length_280_cov_13.528302:1-280 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 51, Coverage: 2, minDepth: 5 [pilon] Confirmed 28 of 280 bases (10.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11079_length_280_cov_13.528302:1-280 [pilon] Processing NODE_12643_length_243_cov_26.942623:1-243 [pilon] NODE_7414_length_447_cov_20.524540:1-447 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 152, Coverage: 25, minDepth: 6 [pilon] Confirmed 387 of 447 bases (86.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7414_length_447_cov_20.524540:1-447 [pilon] Processing NODE_2389_length_992_cov_2.649828:1-992 [pilon] NODE_9127_length_360_cov_19.435146:1-360 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 100, Coverage: 8, minDepth: 5 [pilon] Confirmed 219 of 360 bases (60.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9127_length_360_cov_19.435146:1-360 [pilon] Processing NODE_9658_length_339_cov_20.564220:1-339 [pilon] NODE_9429_length_348_cov_33.779736:1-348 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 134, Coverage: 4, minDepth: 5 [pilon] Confirmed 140 of 348 bases (40.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9429_length_348_cov_33.779736:1-348 [pilon] Processing NODE_14345_length_243_cov_11.500000:1-243 [pilon] NODE_1777_length_1154_cov_11.997096:1-1154 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 288, Coverage: 32, minDepth: 8 [pilon] Confirmed 1001 of 1154 bases (86.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1777_length_1154_cov_11.997096:1-1154 [pilon] Processing NODE_5564_length_573_cov_12.741150:1-573 [pilon] NODE_75_length_3253_cov_2.180396:1-3253 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 190, Coverage: 7, minDepth: 5 [pilon] Confirmed 2036 of 3253 bases (62.59%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_75_length_3253_cov_2.180396:1-3253 [pilon] Processing NODE_4072_length_708_cov_14.626917:1-708 [pilon] NODE_647_length_1752_cov_10.493562:1-1752 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 443, Coverage: 26, minDepth: 7 [pilon] Confirmed 1462 of 1752 bases (83.45%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_647_length_1752_cov_10.493562:1-1752 [pilon] Processing NODE_6385_length_511_cov_19.335897:1-511 [pilon] NODE_1263_length_1357_cov_23.701456:1-1357 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 723, Coverage: 64, minDepth: 16 [pilon] Confirmed 1253 of 1357 bases (92.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1263_length_1357_cov_23.701456:1-1357 [pilon] Processing NODE_9014_length_366_cov_10.828571:1-366 [pilon] NODE_14472_length_243_cov_10.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14472_length_243_cov_10.491803:1-243 [pilon] Processing NODE_6786_length_484_cov_1.209366:1-484 [pilon] NODE_4447_length_666_cov_16.045872:1-666 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 209, Coverage: 27, minDepth: 7 [pilon] Confirmed 475 of 666 bases (71.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4447_length_666_cov_16.045872:1-666 [pilon] Processing NODE_9240_length_356_cov_31.161702:1-356 [pilon] NODE_136_length_2798_cov_15.769145:1-2798 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 1002, Coverage: 32, minDepth: 8 [pilon] Confirmed 2116 of 2798 bases (75.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_136_length_2798_cov_15.769145:1-2798 [pilon] Processing NODE_6334_length_515_cov_1.568528:1-515 [pilon] NODE_7736_length_430_cov_43.822006:1-430 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 322, Coverage: 47, minDepth: 12 [pilon] Confirmed 339 of 430 bases (78.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7736_length_430_cov_43.822006:1-430 [pilon] Processing NODE_2760_length_917_cov_4.011307:1-917 [pilon] NODE_9721_length_337_cov_8.759259:1-337 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 42, Coverage: 3, minDepth: 5 [pilon] Confirmed 118 of 337 bases (35.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9721_length_337_cov_8.759259:1-337 [pilon] Processing NODE_2676_length_933_cov_1.253695:1-933 [pilon] NODE_3259_length_822_cov_18.814551:1-822 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 355, Coverage: 41, minDepth: 10 [pilon] Confirmed 522 of 822 bases (63.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3259_length_822_cov_18.814551:1-822 [pilon] Processing NODE_6687_length_491_cov_18.562162:1-491 [pilon] NODE_6881_length_479_cov_6.891061:1-479 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 74, Coverage: 11, minDepth: 5 [pilon] Confirmed 355 of 479 bases (74.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6881_length_479_cov_6.891061:1-479 [pilon] Processing NODE_4941_length_623_cov_1.474104:1-623 [pilon] NODE_8127_length_411_cov_47.434483:1-411 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 292, Coverage: 51, minDepth: 13 [pilon] Confirmed 362 of 411 bases (88.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8127_length_411_cov_47.434483:1-411 [pilon] Processing NODE_1390_length_1300_cov_11.311281:1-1300 [pilon] NODE_4087_length_706_cov_34.076923:1-706 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 457, Coverage: 71, minDepth: 18 [pilon] Confirmed 563 of 706 bases (79.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4087_length_706_cov_34.076923:1-706 [pilon] Processing NODE_10726_length_297_cov_10.977273:1-297 [pilon] NODE_14910_length_243_cov_6.573770:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14910_length_243_cov_6.573770:1-243 [pilon] Processing NODE_5660_length_566_cov_4.528090:1-566 [pilon] NODE_14048_length_243_cov_13.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14048_length_243_cov_13.852459:1-243 [pilon] Processing NODE_13430_length_243_cov_19.024590:1-243 [pilon] NODE_5923_length_546_cov_12.383529:1-546 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 120, Coverage: 21, minDepth: 5 [pilon] Confirmed 425 of 546 bases (77.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5923_length_546_cov_12.383529:1-546 [pilon] Processing NODE_4617_length_651_cov_12.994340:1-651 [pilon] NODE_850_length_1597_cov_27.157182:1-1597 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 936, Coverage: 66, minDepth: 17 [pilon] Confirmed 1348 of 1597 bases (84.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_850_length_1597_cov_27.157182:1-1597 [pilon] Processing NODE_13227_length_243_cov_20.868852:1-243 [pilon] NODE_5564_length_573_cov_12.741150:1-573 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 145, Coverage: 17, minDepth: 5 [pilon] Confirmed 505 of 573 bases (88.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5564_length_573_cov_12.741150:1-573 [pilon] Processing NODE_2500_length_968_cov_1.378985:1-968 [pilon] NODE_9014_length_366_cov_10.828571:1-366 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 48, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 366 bases (35.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9014_length_366_cov_10.828571:1-366 [pilon] Processing NODE_3948_length_721_cov_2.751667:1-721 [pilon] NODE_6385_length_511_cov_19.335897:1-511 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 183, Coverage: 16, minDepth: 5 [pilon] Confirmed 336 of 511 bases (65.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6385_length_511_cov_19.335897:1-511 [pilon] Processing NODE_2659_length_936_cov_11.354601:1-936 [pilon] NODE_12902_length_243_cov_24.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12902_length_243_cov_24.057377:1-243 [pilon] Processing NODE_9955_length_327_cov_25.126214:1-327 [pilon] NODE_14345_length_243_cov_11.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14345_length_243_cov_11.500000:1-243 [pilon] Processing NODE_4891_length_627_cov_13.193676:1-627 [pilon] NODE_12643_length_243_cov_26.942623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12643_length_243_cov_26.942623:1-243 [pilon] Processing NODE_8575_length_390_cov_9.379182:1-390 [pilon] NODE_9658_length_339_cov_20.564220:1-339 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 77, Coverage: 6, minDepth: 5 [pilon] Confirmed 150 of 339 bases (44.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9658_length_339_cov_20.564220:1-339 [pilon] Processing NODE_7707_length_432_cov_15.196141:1-432 [pilon] NODE_2389_length_992_cov_2.649828:1-992 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 72, Coverage: 9, minDepth: 5 [pilon] Confirmed 796 of 992 bases (80.24%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2389_length_992_cov_2.649828:1-992 [pilon] Processing NODE_7499_length_443_cov_15.934783:1-443 [pilon] NODE_2676_length_933_cov_1.253695:1-933 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 52, Coverage: 5, minDepth: 5 [pilon] Confirmed 419 of 933 bases (44.91%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2676_length_933_cov_1.253695:1-933 [pilon] Processing NODE_2925_length_888_cov_2.599739:1-888 [pilon] NODE_4072_length_708_cov_14.626917:1-708 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 206, Coverage: 27, minDepth: 7 [pilon] Confirmed 570 of 708 bases (80.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4072_length_708_cov_14.626917:1-708 [pilon] Processing NODE_3807_length_740_cov_1.856220:1-740 [pilon] NODE_9240_length_356_cov_31.161702:1-356 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 140, Coverage: 14, minDepth: 5 [pilon] Confirmed 229 of 356 bases (64.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9240_length_356_cov_31.161702:1-356 [pilon] Processing NODE_8990_length_367_cov_12.130081:1-367 [pilon] NODE_10726_length_297_cov_10.977273:1-297 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 35, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10726_length_297_cov_10.977273:1-297 [pilon] Processing NODE_12149_length_243_cov_39.344262:1-243 [pilon] NODE_4617_length_651_cov_12.994340:1-651 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 158, Coverage: 17, minDepth: 5 [pilon] Confirmed 448 of 651 bases (68.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4617_length_651_cov_12.994340:1-651 [pilon] Processing NODE_2363_length_999_cov_1.719818:1-999 [pilon] NODE_6786_length_484_cov_1.209366:1-484 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 117 of 484 bases (24.17%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6786_length_484_cov_1.209366:1-484 [pilon] Processing NODE_10982_length_285_cov_14.926829:1-285 [pilon] NODE_1390_length_1300_cov_11.311281:1-1300 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 379, Coverage: 31, minDepth: 8 [pilon] Confirmed 1152 of 1300 bases (88.62%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1390_length_1300_cov_11.311281:1-1300 [pilon] Processing NODE_7060_length_467_cov_32.289017:1-467 [pilon] NODE_6334_length_515_cov_1.568528:1-515 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 246 of 515 bases (47.77%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6334_length_515_cov_1.568528:1-515 [pilon] Processing NODE_4788_length_636_cov_4.506796:1-636 [pilon] NODE_5660_length_566_cov_4.528090:1-566 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 42, Coverage: 9, minDepth: 5 [pilon] Confirmed 388 of 566 bases (68.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5660_length_566_cov_4.528090:1-566 [pilon] Processing NODE_12838_length_243_cov_24.696721:1-243 [pilon] NODE_2760_length_917_cov_4.011307:1-917 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 81, Coverage: 11, minDepth: 5 [pilon] Confirmed 788 of 917 bases (85.93%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2760_length_917_cov_4.011307:1-917 [pilon] Processing NODE_11988_length_246_cov_23.568000:1-246 [pilon] NODE_13430_length_243_cov_19.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13430_length_243_cov_19.024590:1-243 [pilon] Processing NODE_14947_length_243_cov_6.139344:1-243 [pilon] NODE_13227_length_243_cov_20.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13227_length_243_cov_20.868852:1-243 [pilon] Processing NODE_9922_length_329_cov_16.326923:1-329 [pilon] NODE_2500_length_968_cov_1.378985:1-968 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 41, Coverage: 5, minDepth: 5 [pilon] Confirmed 350 of 968 bases (36.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2500_length_968_cov_1.378985:1-968 [pilon] Processing NODE_3932_length_723_cov_25.681063:1-723 [pilon] NODE_6687_length_491_cov_18.562162:1-491 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 155, Coverage: 24, minDepth: 6 [pilon] Confirmed 403 of 491 bases (82.08%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6687_length_491_cov_18.562162:1-491 [pilon] Processing NODE_15099_length_221_cov_34.760000:1-221 [pilon] NODE_2659_length_936_cov_11.354601:1-936 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 257, Coverage: 11, minDepth: 5 [pilon] Confirmed 615 of 936 bases (65.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2659_length_936_cov_11.354601:1-936 [pilon] Processing NODE_2787_length_911_cov_2.618987:1-911 [pilon] NODE_4941_length_623_cov_1.474104:1-623 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 31, Coverage: 6, minDepth: 5 [pilon] Confirmed 425 of 623 bases (68.22%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4941_length_623_cov_1.474104:1-623 [pilon] Processing NODE_7613_length_437_cov_3.765823:1-437 [pilon] NODE_3948_length_721_cov_2.751667:1-721 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 55, Coverage: 9, minDepth: 5 [pilon] Confirmed 533 of 721 bases (73.93%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3948_length_721_cov_2.751667:1-721 [pilon] Processing NODE_9297_length_354_cov_16.974249:1-354 [pilon] NODE_2925_length_888_cov_2.599739:1-888 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 63, Coverage: 9, minDepth: 5 [pilon] Confirmed 777 of 888 bases (87.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2925_length_888_cov_2.599739:1-888 [pilon] Processing NODE_451_length_1970_cov_10.633315:1-1970 [pilon] NODE_2363_length_999_cov_1.719818:1-999 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 48, Coverage: 6, minDepth: 5 [pilon] Confirmed 632 of 999 bases (63.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2363_length_999_cov_1.719818:1-999 [pilon] Processing NODE_8191_length_409_cov_0.704861:1-409 [pilon] NODE_12149_length_243_cov_39.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12149_length_243_cov_39.344262:1-243 [pilon] Processing NODE_1455_length_1279_cov_14.195164:1-1279 [pilon] NODE_9955_length_327_cov_25.126214:1-327 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 106, Coverage: 7, minDepth: 5 [pilon] Confirmed 142 of 327 bases (43.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9955_length_327_cov_25.126214:1-327 [pilon] Processing NODE_976_length_1511_cov_3.257554:1-1511 [pilon] NODE_7060_length_467_cov_32.289017:1-467 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 285, Coverage: 49, minDepth: 12 [pilon] Confirmed 400 of 467 bases (85.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7060_length_467_cov_32.289017:1-467 [pilon] Processing NODE_1345_length_1322_cov_28.330558:1-1322 [pilon] NODE_12838_length_243_cov_24.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12838_length_243_cov_24.696721:1-243 [pilon] NODE_4891_length_627_cov_13.193676:1-627 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 166, Coverage: 12, minDepth: 5 [pilon] Confirmed 360 of 627 bases (57.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4891_length_627_cov_13.193676:1-627 [pilon] Processing NODE_4866_length_629_cov_23.694882:1-629 [pilon] NODE_7707_length_432_cov_15.196141:1-432 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 91, Coverage: 7, minDepth: 5 [pilon] Confirmed 289 of 432 bases (66.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7707_length_432_cov_15.196141:1-432 [pilon] Processing NODE_10557_length_303_cov_9.357143:1-303 [pilon] NODE_14947_length_243_cov_6.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14947_length_243_cov_6.139344:1-243 [pilon] Processing NODE_2270_length_1017_cov_20.770089:1-1017 [pilon] NODE_9922_length_329_cov_16.326923:1-329 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 81, Coverage: 11, minDepth: 5 [pilon] Confirmed 269 of 329 bases (81.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9922_length_329_cov_16.326923:1-329 [pilon] Processing NODE_13003_length_243_cov_22.877049:1-243 [pilon] NODE_8575_length_390_cov_9.379182:1-390 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 51, Coverage: 4, minDepth: 5 [pilon] Confirmed 136 of 390 bases (34.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8575_length_390_cov_9.379182:1-390 [pilon] Processing NODE_9421_length_349_cov_13.039474:1-349 [pilon] NODE_3932_length_723_cov_25.681063:1-723 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 400, Coverage: 26, minDepth: 7 [pilon] Confirmed 489 of 723 bases (67.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3932_length_723_cov_25.681063:1-723 [pilon] Processing NODE_10273_length_315_cov_5.412371:1-315 [pilon] NODE_7499_length_443_cov_15.934783:1-443 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 123, Coverage: 17, minDepth: 5 [pilon] Confirmed 405 of 443 bases (91.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7499_length_443_cov_15.934783:1-443 [pilon] Processing NODE_15218_length_150_cov_3.241379:1-150 [pilon] NODE_3807_length_740_cov_1.856220:1-740 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 33, Coverage: 5, minDepth: 5 [pilon] Confirmed 457 of 740 bases (61.76%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3807_length_740_cov_1.856220:1-740 [pilon] Processing NODE_5793_length_555_cov_48.156682:1-555 [pilon] NODE_8990_length_367_cov_12.130081:1-367 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 81, Coverage: 8, minDepth: 5 [pilon] Confirmed 294 of 367 bases (80.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8990_length_367_cov_12.130081:1-367 [pilon] Processing NODE_9274_length_354_cov_30.592275:1-354 [pilon] NODE_9297_length_354_cov_16.974249:1-354 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 80, Coverage: 12, minDepth: 5 [pilon] Confirmed 258 of 354 bases (72.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9297_length_354_cov_16.974249:1-354 [pilon] Processing NODE_3992_length_716_cov_2.769748:1-716 [pilon] NODE_11988_length_246_cov_23.568000:1-246 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 58, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 246 bases (52.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11988_length_246_cov_23.568000:1-246 [pilon] Processing NODE_2267_length_1017_cov_37.296875:1-1017 [pilon] NODE_2787_length_911_cov_2.618987:1-911 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 51, Coverage: 7, minDepth: 5 [pilon] Confirmed 468 of 911 bases (51.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2787_length_911_cov_2.618987:1-911 [pilon] Processing NODE_8685_length_383_cov_38.270992:1-383 [pilon] NODE_4788_length_636_cov_4.506796:1-636 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 56, Coverage: 11, minDepth: 5 [pilon] Confirmed 485 of 636 bases (76.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4788_length_636_cov_4.506796:1-636 [pilon] Processing NODE_12340_length_243_cov_32.450820:1-243 [pilon] NODE_10982_length_285_cov_14.926829:1-285 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 60, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10982_length_285_cov_14.926829:1-285 [pilon] Processing NODE_4424_length_669_cov_1.437956:1-669 [pilon] NODE_15099_length_221_cov_34.760000:1-221 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 73, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 221 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15099_length_221_cov_34.760000:1-221 [pilon] Processing NODE_786_length_1631_cov_14.746358:1-1631 [pilon] NODE_451_length_1970_cov_10.633315:1-1970 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 736, Coverage: 48, minDepth: 12 [pilon] Confirmed 1453 of 1970 bases (73.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_451_length_1970_cov_10.633315:1-1970 [pilon] Processing NODE_578_length_1829_cov_2.971311:1-1829 [pilon] NODE_8191_length_409_cov_0.704861:1-409 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 121 of 409 bases (29.58%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8191_length_409_cov_0.704861:1-409 [pilon] Processing NODE_7223_length_459_cov_2.284024:1-459 [pilon] NODE_7613_length_437_cov_3.765823:1-437 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 437 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7613_length_437_cov_3.765823:1-437 [pilon] Processing NODE_7289_length_455_cov_11.508982:1-455 [pilon] NODE_1455_length_1279_cov_14.195164:1-1279 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 404, Coverage: 24, minDepth: 6 [pilon] Confirmed 848 of 1279 bases (66.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1455_length_1279_cov_14.195164:1-1279 [pilon] Processing NODE_12543_length_243_cov_28.418033:1-243 [pilon] NODE_1345_length_1322_cov_28.330558:1-1322 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 752, Coverage: 59, minDepth: 15 [pilon] Confirmed 1280 of 1322 bases (96.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1345_length_1322_cov_28.330558:1-1322 [pilon] Processing NODE_9224_length_357_cov_12.072034:1-357 [pilon] NODE_10273_length_315_cov_5.412371:1-315 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10273_length_315_cov_5.412371:1-315 [pilon] Processing NODE_5869_length_550_cov_2.480186:1-550 [pilon] NODE_13003_length_243_cov_22.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13003_length_243_cov_22.877049:1-243 [pilon] Processing NODE_14319_length_243_cov_11.696721:1-243 [pilon] NODE_2270_length_1017_cov_20.770089:1-1017 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 448, Coverage: 44, minDepth: 11 [pilon] Confirmed 943 of 1017 bases (92.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2270_length_1017_cov_20.770089:1-1017 [pilon] Processing NODE_1133_length_1424_cov_17.948580:1-1424 [pilon] NODE_9421_length_349_cov_13.039474:1-349 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 77, Coverage: 7, minDepth: 5 [pilon] Confirmed 176 of 349 bases (50.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9421_length_349_cov_13.039474:1-349 [pilon] Processing NODE_11505_length_264_cov_5.314685:1-264 [pilon] NODE_3992_length_716_cov_2.769748:1-716 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 67, Coverage: 8, minDepth: 5 [pilon] Confirmed 476 of 716 bases (66.48%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3992_length_716_cov_2.769748:1-716 [pilon] Processing NODE_8497_length_394_cov_14.864469:1-394 [pilon] NODE_8685_length_383_cov_38.270992:1-383 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 221, Coverage: 56, minDepth: 14 [pilon] Confirmed 329 of 383 bases (85.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8685_length_383_cov_38.270992:1-383 [pilon] Processing NODE_2983_length_877_cov_4.298942:1-877 [pilon] NODE_5793_length_555_cov_48.156682:1-555 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 498, Coverage: 85, minDepth: 21 [pilon] Confirmed 471 of 555 bases (84.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5793_length_555_cov_48.156682:1-555 [pilon] Processing NODE_159_length_2689_cov_4.562695:1-2689 [pilon] NODE_4866_length_629_cov_23.694882:1-629 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 272, Coverage: 41, minDepth: 10 [pilon] Confirmed 474 of 629 bases (75.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4866_length_629_cov_23.694882:1-629 [pilon] Processing NODE_13966_length_243_cov_14.377049:1-243 [pilon] NODE_10557_length_303_cov_9.357143:1-303 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 27, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 303 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10557_length_303_cov_9.357143:1-303 [pilon] Processing NODE_10715_length_297_cov_15.653409:1-297 [pilon] NODE_976_length_1511_cov_3.257554:1-1511 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 111, Coverage: 10, minDepth: 5 [pilon] Confirmed 1160 of 1511 bases (76.77%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_976_length_1511_cov_3.257554:1-1511 [pilon] Processing NODE_13259_length_243_cov_20.524590:1-243 [pilon] NODE_15218_length_150_cov_3.241379:1-150 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 150 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15218_length_150_cov_3.241379:1-150 [pilon] Processing NODE_12348_length_243_cov_32.098361:1-243 [pilon] NODE_12340_length_243_cov_32.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12340_length_243_cov_32.450820:1-243 [pilon] Processing NODE_6051_length_536_cov_2.689157:1-536 [pilon] NODE_2267_length_1017_cov_37.296875:1-1017 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 818, Coverage: 65, minDepth: 16 [pilon] Confirmed 811 of 1017 bases (79.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2267_length_1017_cov_37.296875:1-1017 [pilon] Processing NODE_1510_length_1253_cov_36.260601:1-1253 [pilon] NODE_9274_length_354_cov_30.592275:1-354 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 159, Coverage: 24, minDepth: 6 [pilon] Confirmed 276 of 354 bases (77.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9274_length_354_cov_30.592275:1-354 [pilon] Processing NODE_519_length_1901_cov_10.502247:1-1901 [pilon] NODE_4424_length_669_cov_1.437956:1-669 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 324 of 669 bases (48.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4424_length_669_cov_1.437956:1-669 [pilon] Processing NODE_14770_length_243_cov_7.967213:1-243 [pilon] NODE_7223_length_459_cov_2.284024:1-459 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 212 of 459 bases (46.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7223_length_459_cov_2.284024:1-459 [pilon] Processing NODE_9093_length_362_cov_12.286307:1-362 [pilon] NODE_578_length_1829_cov_2.971311:1-1829 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 143, Coverage: 10, minDepth: 5 [pilon] Confirmed 1456 of 1829 bases (79.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_578_length_1829_cov_2.971311:1-1829 [pilon] Processing NODE_13107_length_243_cov_21.893443:1-243 [pilon] NODE_12543_length_243_cov_28.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12543_length_243_cov_28.418033:1-243 [pilon] Processing NODE_10246_length_315_cov_13.262887:1-315 [pilon] NODE_7289_length_455_cov_11.508982:1-455 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 80, Coverage: 7, minDepth: 5 [pilon] Confirmed 296 of 455 bases (65.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7289_length_455_cov_11.508982:1-455 [pilon] Processing NODE_11729_length_255_cov_22.582090:1-255 [pilon] NODE_5869_length_550_cov_2.480186:1-550 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 30, Coverage: 7, minDepth: 5 [pilon] Confirmed 337 of 550 bases (61.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5869_length_550_cov_2.480186:1-550 [pilon] Processing NODE_8444_length_397_cov_14.456522:1-397 [pilon] NODE_786_length_1631_cov_14.746358:1-1631 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 510, Coverage: 35, minDepth: 9 [pilon] Confirmed 1400 of 1631 bases (85.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_786_length_1631_cov_14.746358:1-1631 [pilon] Processing NODE_7795_length_428_cov_0.944625:1-428 [pilon] NODE_1133_length_1424_cov_17.948580:1-1424 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 581, Coverage: 30, minDepth: 8 [pilon] Confirmed 1200 of 1424 bases (84.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1133_length_1424_cov_17.948580:1-1424 [pilon] Processing NODE_7815_length_426_cov_23.813115:1-426 [pilon] NODE_9224_length_357_cov_12.072034:1-357 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 64, Coverage: 8, minDepth: 5 [pilon] Confirmed 152 of 357 bases (42.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9224_length_357_cov_12.072034:1-357 [pilon] Processing NODE_15106_length_217_cov_26.000000:1-217 [pilon] NODE_11505_length_264_cov_5.314685:1-264 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11505_length_264_cov_5.314685:1-264 [pilon] Processing NODE_10150_length_319_cov_24.813131:1-319 [pilon] NODE_2983_length_877_cov_4.298942:1-877 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 84, Coverage: 12, minDepth: 5 [pilon] Confirmed 743 of 877 bases (84.72%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2983_length_877_cov_4.298942:1-877 [pilon] Processing NODE_8957_length_369_cov_4.983871:1-369 [pilon] NODE_14319_length_243_cov_11.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14319_length_243_cov_11.696721:1-243 [pilon] Processing NODE_8714_length_381_cov_26.038462:1-381 [pilon] NODE_8497_length_394_cov_14.864469:1-394 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 102, Coverage: 13, minDepth: 5 [pilon] Confirmed 249 of 394 bases (63.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8497_length_394_cov_14.864469:1-394 [pilon] Processing NODE_13342_length_243_cov_19.901639:1-243 [pilon] NODE_159_length_2689_cov_4.562695:1-2689 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 314, Coverage: 15, minDepth: 5 [pilon] Confirmed 2499 of 2689 bases (92.93%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_159_length_2689_cov_4.562695:1-2689 [pilon] Processing NODE_1211_length_1387_cov_30.145340:1-1387 [pilon] NODE_1510_length_1253_cov_36.260601:1-1253 log: [pilon] frags shovill.bam: coverage 87 [pilon] Total Reads: 980, Coverage: 87, minDepth: 22 [pilon] Confirmed 1172 of 1253 bases (93.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1510_length_1253_cov_36.260601:1-1253 [pilon] Processing NODE_10719_length_297_cov_13.988636:1-297 [pilon] NODE_6051_length_536_cov_2.689157:1-536 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 36, Coverage: 8, minDepth: 5 [pilon] Confirmed 323 of 536 bases (60.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6051_length_536_cov_2.689157:1-536 [pilon] Processing NODE_12075_length_244_cov_29.048780:1-244 [pilon] NODE_10715_length_297_cov_15.653409:1-297 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 57, Coverage: 5, minDepth: 5 [pilon] Confirmed 137 of 297 bases (46.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10715_length_297_cov_15.653409:1-297 [pilon] Processing NODE_10655_length_300_cov_8.229050:1-300 [pilon] NODE_13259_length_243_cov_20.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13259_length_243_cov_20.524590:1-243 [pilon] Processing NODE_6792_length_483_cov_31.353591:1-483 [pilon] NODE_13966_length_243_cov_14.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13966_length_243_cov_14.377049:1-243 [pilon] Processing NODE_7087_length_465_cov_31.741279:1-465 [pilon] NODE_12348_length_243_cov_32.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 80, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12348_length_243_cov_32.098361:1-243 [pilon] Processing NODE_4817_length_633_cov_18.667969:1-633 [pilon] NODE_13107_length_243_cov_21.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_519_length_1901_cov_10.502247:1-1901 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 504, Coverage: 24, minDepth: 6 [pilon] Confirmed 1451 of 1901 bases (76.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13107_length_243_cov_21.893443:1-243 [pilon] Processing NODE_9173_length_358_cov_27.556962:1-358 [pilon] Finished processing NODE_519_length_1901_cov_10.502247:1-1901 [pilon] Processing NODE_9778_length_335_cov_33.672897:1-335 [pilon] NODE_14770_length_243_cov_7.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14770_length_243_cov_7.967213:1-243 [pilon] Processing NODE_8329_length_403_cov_4.663121:1-403 [pilon] NODE_9093_length_362_cov_12.286307:1-362 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 76, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 362 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9093_length_362_cov_12.286307:1-362 [pilon] Processing NODE_1535_length_1247_cov_3.004440:1-1247 [pilon] NODE_11729_length_255_cov_22.582090:1-255 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 69, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11729_length_255_cov_22.582090:1-255 [pilon] Processing NODE_12057_length_245_cov_22.709677:1-245 [pilon] NODE_10246_length_315_cov_13.262887:1-315 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 66, Coverage: 4, minDepth: 5 [pilon] Confirmed 157 of 315 bases (49.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10246_length_315_cov_13.262887:1-315 [pilon] Processing NODE_13249_length_243_cov_20.647541:1-243 [pilon] NODE_8444_length_397_cov_14.456522:1-397 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 105, Coverage: 17, minDepth: 5 [pilon] Confirmed 316 of 397 bases (79.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8444_length_397_cov_14.456522:1-397 [pilon] Processing NODE_9409_length_350_cov_12.117904:1-350 [pilon] NODE_15106_length_217_cov_26.000000:1-217 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 47, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 217 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15106_length_217_cov_26.000000:1-217 [pilon] Processing NODE_5088_length_611_cov_15.418367:1-611 [pilon] NODE_8957_length_369_cov_4.983871:1-369 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 30, Coverage: 4, minDepth: 5 [pilon] Confirmed 150 of 369 bases (40.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8957_length_369_cov_4.983871:1-369 [pilon] Processing NODE_3824_length_738_cov_9.703404:1-738 [pilon] NODE_7795_length_428_cov_0.944625:1-428 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 155 of 428 bases (36.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7795_length_428_cov_0.944625:1-428 [pilon] Processing NODE_88_length_3109_cov_9.926037:1-3109 [pilon] NODE_8714_length_381_cov_26.038462:1-381 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 128, Coverage: 13, minDepth: 5 [pilon] Confirmed 253 of 381 bases (66.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8714_length_381_cov_26.038462:1-381 [pilon] Processing NODE_9952_length_327_cov_29.063107:1-327 [pilon] NODE_10150_length_319_cov_24.813131:1-319 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 112, Coverage: 4, minDepth: 5 [pilon] Confirmed 143 of 319 bases (44.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10150_length_319_cov_24.813131:1-319 [pilon] Processing NODE_3996_length_715_cov_30.974747:1-715 [pilon] NODE_10655_length_300_cov_8.229050:1-300 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10655_length_300_cov_8.229050:1-300 [pilon] Processing NODE_13999_length_243_cov_14.196721:1-243 [pilon] NODE_4817_length_633_cov_18.667969:1-633 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 232, Coverage: 26, minDepth: 7 [pilon] Confirmed 582 of 633 bases (91.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4817_length_633_cov_18.667969:1-633 [pilon] Processing NODE_11636_length_258_cov_21.708029:1-258 [pilon] NODE_6792_length_483_cov_31.353591:1-483 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 259, Coverage: 37, minDepth: 9 [pilon] Confirmed 332 of 483 bases (68.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6792_length_483_cov_31.353591:1-483 [pilon] Processing NODE_14709_length_243_cov_8.500000:1-243 [pilon] NODE_13342_length_243_cov_19.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13342_length_243_cov_19.901639:1-243 [pilon] Processing NODE_7493_length_443_cov_43.093168:1-443 [pilon] NODE_10719_length_297_cov_13.988636:1-297 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 49, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10719_length_297_cov_13.988636:1-297 [pilon] Processing NODE_12911_length_243_cov_23.983607:1-243 [pilon] NODE_1211_length_1387_cov_30.145340:1-1387 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 846, Coverage: 60, minDepth: 15 [pilon] Confirmed 1140 of 1387 bases (82.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1211_length_1387_cov_30.145340:1-1387 [pilon] Processing NODE_2560_length_955_cov_8.971223:1-955 [pilon] NODE_12075_length_244_cov_29.048780:1-244 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 84, Coverage: 6, minDepth: 5 [pilon] Confirmed 187 of 244 bases (76.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12075_length_244_cov_29.048780:1-244 [pilon] Processing NODE_12298_length_243_cov_33.188525:1-243 [pilon] NODE_9173_length_358_cov_27.556962:1-358 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 128, Coverage: 18, minDepth: 5 [pilon] Confirmed 277 of 358 bases (77.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9173_length_358_cov_27.556962:1-358 [pilon] Processing NODE_1245_length_1368_cov_6.553328:1-1368 [pilon] NODE_7815_length_426_cov_23.813115:1-426 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 192, Coverage: 27, minDepth: 7 [pilon] Confirmed 289 of 426 bases (67.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7815_length_426_cov_23.813115:1-426 [pilon] Processing NODE_754_length_1665_cov_15.117228:1-1665 [pilon] NODE_7087_length_465_cov_31.741279:1-465 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 197, Coverage: 25, minDepth: 6 [pilon] Confirmed 298 of 465 bases (64.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7087_length_465_cov_31.741279:1-465 [pilon] Processing NODE_4768_length_638_cov_2.812379:1-638 [pilon] NODE_9778_length_335_cov_33.672897:1-335 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 175, Coverage: 24, minDepth: 6 [pilon] Confirmed 310 of 335 bases (92.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9778_length_335_cov_33.672897:1-335 [pilon] Processing NODE_878_length_1578_cov_11.372684:1-1578 [pilon] NODE_12057_length_245_cov_22.709677:1-245 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 54, Coverage: 8, minDepth: 5 [pilon] Confirmed 203 of 245 bases (82.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12057_length_245_cov_22.709677:1-245 [pilon] Processing NODE_1423_length_1291_cov_18.576068:1-1291 [pilon] NODE_8329_length_403_cov_4.663121:1-403 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 30, Coverage: 8, minDepth: 5 [pilon] Confirmed 264 of 403 bases (65.51%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8329_length_403_cov_4.663121:1-403 [pilon] Processing NODE_1329_length_1329_cov_17.485927:1-1329 [pilon] NODE_13249_length_243_cov_20.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13249_length_243_cov_20.647541:1-243 [pilon] Processing NODE_13526_length_243_cov_18.106557:1-243 [pilon] NODE_5088_length_611_cov_15.418367:1-611 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 187, Coverage: 14, minDepth: 5 [pilon] Confirmed 359 of 611 bases (58.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5088_length_611_cov_15.418367:1-611 [pilon] Processing NODE_14851_length_243_cov_7.155738:1-243 [pilon] NODE_3824_length_738_cov_9.703404:1-738 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 129, Coverage: 23, minDepth: 6 [pilon] Confirmed 616 of 738 bases (83.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3824_length_738_cov_9.703404:1-738 [pilon] Processing NODE_11168_length_276_cov_31.658065:1-276 [pilon] NODE_9952_length_327_cov_29.063107:1-327 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 127, Coverage: 6, minDepth: 5 [pilon] Confirmed 160 of 327 bases (48.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9952_length_327_cov_29.063107:1-327 [pilon] Processing NODE_613_length_1790_cov_3.245656:1-1790 [pilon] NODE_3996_length_715_cov_30.974747:1-715 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 504, Coverage: 48, minDepth: 12 [pilon] Confirmed 544 of 715 bases (76.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3996_length_715_cov_30.974747:1-715 [pilon] Processing NODE_12325_length_243_cov_32.639344:1-243 [pilon] NODE_13999_length_243_cov_14.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13999_length_243_cov_14.196721:1-243 [pilon] Processing NODE_12683_length_243_cov_26.401639:1-243 [pilon] NODE_11636_length_258_cov_21.708029:1-258 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 55, Coverage: 6, minDepth: 5 [pilon] Confirmed 181 of 258 bases (70.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11636_length_258_cov_21.708029:1-258 [pilon] Processing NODE_4509_length_661_cov_0.879630:1-661 [pilon] NODE_14709_length_243_cov_8.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14709_length_243_cov_8.500000:1-243 [pilon] Processing NODE_9615_length_341_cov_43.504545:1-341 [pilon] NODE_12911_length_243_cov_23.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12911_length_243_cov_23.983607:1-243 [pilon] Processing NODE_1181_length_1407_cov_3.315708:1-1407 [pilon] NODE_7493_length_443_cov_43.093168:1-443 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 312, Coverage: 64, minDepth: 16 [pilon] Confirmed 346 of 443 bases (78.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7493_length_443_cov_43.093168:1-443 [pilon] Processing NODE_11484_length_264_cov_15.496503:1-264 [pilon] NODE_9409_length_350_cov_12.117904:1-350 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 69, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 350 bases (37.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9409_length_350_cov_12.117904:1-350 [pilon] Processing NODE_915_length_1547_cov_23.330996:1-1547 [pilon] NODE_1245_length_1368_cov_6.553328:1-1368 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 191, Coverage: 18, minDepth: 5 [pilon] Confirmed 1044 of 1368 bases (76.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1245_length_1368_cov_6.553328:1-1368 [pilon] Processing NODE_11733_length_255_cov_21.873134:1-255 [pilon] NODE_1535_length_1247_cov_3.004440:1-1247 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 86, Coverage: 9, minDepth: 5 [pilon] Confirmed 709 of 1247 bases (56.86%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1535_length_1247_cov_3.004440:1-1247 [pilon] Processing NODE_5962_length_544_cov_1.591017:1-544 [pilon] NODE_88_length_3109_cov_9.926037:1-3109 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 816, Coverage: 30, minDepth: 8 [pilon] Confirmed 2035 of 3109 bases (65.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_88_length_3109_cov_9.926037:1-3109 [pilon] Processing NODE_5634_length_568_cov_7.968680:1-568 [pilon] NODE_878_length_1578_cov_11.372684:1-1578 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 401, Coverage: 25, minDepth: 6 [pilon] Confirmed 1390 of 1578 bases (88.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_878_length_1578_cov_11.372684:1-1578 [pilon] Processing NODE_7858_length_424_cov_66.940594:1-424 [pilon] NODE_2560_length_955_cov_8.971223:1-955 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 179, Coverage: 7, minDepth: 5 [pilon] Confirmed 496 of 955 bases (51.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2560_length_955_cov_8.971223:1-955 [pilon] Processing NODE_6307_length_517_cov_17.429293:1-517 [pilon] NODE_12298_length_243_cov_33.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 84, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12298_length_243_cov_33.188525:1-243 [pilon] Processing NODE_5717_length_562_cov_3.108844:1-562 [pilon] NODE_4768_length_638_cov_2.812379:1-638 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 38, Coverage: 7, minDepth: 5 [pilon] Confirmed 401 of 638 bases (62.85%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4768_length_638_cov_2.812379:1-638 [pilon] Processing NODE_10768_length_294_cov_33.445087:1-294 [pilon] NODE_14851_length_243_cov_7.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14851_length_243_cov_7.155738:1-243 [pilon] Processing NODE_4310_length_679_cov_74.756272:1-679 [pilon] NODE_754_length_1665_cov_15.117228:1-1665 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 638, Coverage: 33, minDepth: 8 [pilon] Confirmed 1400 of 1665 bases (84.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_754_length_1665_cov_15.117228:1-1665 [pilon] Processing NODE_14320_length_243_cov_11.696721:1-243 [pilon] NODE_12683_length_243_cov_26.401639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12683_length_243_cov_26.401639:1-243 [pilon] Processing NODE_2006_length_1085_cov_26.798755:1-1085 [pilon] NODE_4509_length_661_cov_0.879630:1-661 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 19, Coverage: 3, minDepth: 5 [pilon] Confirmed 203 of 661 bases (30.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4509_length_661_cov_0.879630:1-661 [pilon] Processing NODE_9377_length_351_cov_17.930435:1-351 [pilon] NODE_11168_length_276_cov_31.658065:1-276 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 112, Coverage: 9, minDepth: 5 [pilon] Confirmed 208 of 276 bases (75.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11168_length_276_cov_31.658065:1-276 [pilon] Processing NODE_5553_length_574_cov_1.364238:1-574 [pilon] NODE_613_length_1790_cov_3.245656:1-1790 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 147, Coverage: 11, minDepth: 5 [pilon] Confirmed 1461 of 1790 bases (81.62%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_613_length_1790_cov_3.245656:1-1790 [pilon] Processing NODE_545_length_1863_cov_22.639495:1-1863 [pilon] NODE_12325_length_243_cov_32.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12325_length_243_cov_32.639344:1-243 [pilon] Processing NODE_414_length_2027_cov_35.351522:1-2027 [pilon] NODE_9615_length_341_cov_43.504545:1-341 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 215, Coverage: 30, minDepth: 8 [pilon] Confirmed 308 of 341 bases (90.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9615_length_341_cov_43.504545:1-341 [pilon] Processing NODE_2984_length_876_cov_15.018543:1-876 [pilon] NODE_11484_length_264_cov_15.496503:1-264 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11484_length_264_cov_15.496503:1-264 [pilon] Processing NODE_716_length_1690_cov_33.225621:1-1690 [pilon] NODE_1181_length_1407_cov_3.315708:1-1407 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 108, Coverage: 9, minDepth: 5 [pilon] Confirmed 858 of 1407 bases (60.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1181_length_1407_cov_3.315708:1-1407 [pilon] Processing NODE_4231_length_689_cov_28.538732:1-689 [pilon] NODE_1423_length_1291_cov_18.576068:1-1291 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 537, Coverage: 28, minDepth: 7 [pilon] Confirmed 1045 of 1291 bases (80.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1423_length_1291_cov_18.576068:1-1291 [pilon] Processing NODE_3203_length_832_cov_22.230661:1-832 [pilon] NODE_13526_length_243_cov_18.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13526_length_243_cov_18.106557:1-243 [pilon] Processing NODE_13113_length_243_cov_21.852459:1-243 [pilon] NODE_1329_length_1329_cov_17.485927:1-1329 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 386, Coverage: 21, minDepth: 5 [pilon] Confirmed 928 of 1329 bases (69.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1329_length_1329_cov_17.485927:1-1329 [pilon] Processing NODE_11576_length_261_cov_18.635714:1-261 [pilon] NODE_11733_length_255_cov_21.873134:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 67, Coverage: 4, minDepth: 5 [pilon] Confirmed 106 of 255 bases (41.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11733_length_255_cov_21.873134:1-255 [pilon] Processing NODE_11230_length_274_cov_17.287582:1-274 [pilon] NODE_7858_length_424_cov_66.940594:1-424 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 448, Coverage: 71, minDepth: 18 [pilon] Confirmed 359 of 424 bases (84.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7858_length_424_cov_66.940594:1-424 [pilon] Processing NODE_355_length_2119_cov_2.141141:1-2119 [pilon] NODE_5962_length_544_cov_1.591017:1-544 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 30, Coverage: 7, minDepth: 5 [pilon] Confirmed 413 of 544 bases (75.92%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5962_length_544_cov_1.591017:1-544 [pilon] Processing NODE_14009_length_243_cov_14.139344:1-243 [pilon] NODE_915_length_1547_cov_23.330996:1-1547 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 957, Coverage: 61, minDepth: 15 [pilon] Confirmed 1301 of 1547 bases (84.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_915_length_1547_cov_23.330996:1-1547 [pilon] Processing NODE_986_length_1505_cov_0.885838:1-1505 [pilon] NODE_5553_length_574_cov_1.364238:1-574 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 21, Coverage: 4, minDepth: 5 [pilon] Confirmed 253 of 574 bases (44.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5553_length_574_cov_1.364238:1-574 [pilon] Processing NODE_50_length_3591_cov_17.192219:1-3591 [pilon] NODE_9377_length_351_cov_17.930435:1-351 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 93, Coverage: 11, minDepth: 5 [pilon] Confirmed 234 of 351 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9377_length_351_cov_17.930435:1-351 [pilon] Processing NODE_11452_length_265_cov_6.034722:1-265 [pilon] NODE_4310_length_679_cov_74.756272:1-679 log: [pilon] frags shovill.bam: coverage 139 [pilon] Total Reads: 929, Coverage: 139, minDepth: 35 [pilon] Confirmed 597 of 679 bases (87.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4310_length_679_cov_74.756272:1-679 [pilon] Processing NODE_5366_length_587_cov_2.894850:1-587 [pilon] NODE_5634_length_568_cov_7.968680:1-568 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 81, Coverage: 19, minDepth: 5 [pilon] Confirmed 486 of 568 bases (85.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5634_length_568_cov_7.968680:1-568 [pilon] Processing NODE_12732_length_243_cov_25.803279:1-243 [pilon] NODE_6307_length_517_cov_17.429293:1-517 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 153, Coverage: 28, minDepth: 7 [pilon] Confirmed 371 of 517 bases (71.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6307_length_517_cov_17.429293:1-517 [pilon] Processing NODE_562_length_1846_cov_3.784928:1-1846 [pilon] NODE_2006_length_1085_cov_26.798755:1-1085 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 620, Coverage: 43, minDepth: 11 [pilon] Confirmed 873 of 1085 bases (80.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2006_length_1085_cov_26.798755:1-1085 [pilon] Processing NODE_11291_length_273_cov_7.026316:1-273 [pilon] NODE_2984_length_876_cov_15.018543:1-876 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 299, Coverage: 34, minDepth: 9 [pilon] Confirmed 800 of 876 bases (91.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2984_length_876_cov_15.018543:1-876 [pilon] Processing NODE_13586_length_243_cov_17.590164:1-243 [pilon] NODE_4231_length_689_cov_28.538732:1-689 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 361, Coverage: 53, minDepth: 13 [pilon] Confirmed 589 of 689 bases (85.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4231_length_689_cov_28.538732:1-689 [pilon] Processing NODE_14930_length_243_cov_6.393443:1-243 [pilon] NODE_5717_length_562_cov_3.108844:1-562 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 35, Coverage: 8, minDepth: 5 [pilon] Confirmed 332 of 562 bases (59.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5717_length_562_cov_3.108844:1-562 [pilon] Processing NODE_7677_length_434_cov_0.958466:1-434 [pilon] NODE_716_length_1690_cov_33.225621:1-1690 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 1320, Coverage: 75, minDepth: 19 [pilon] Confirmed 1606 of 1690 bases (95.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_716_length_1690_cov_33.225621:1-1690 [pilon] Processing NODE_5287_length_593_cov_35.849576:1-593 [pilon] NODE_10768_length_294_cov_33.445087:1-294 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 113, Coverage: 4, minDepth: 5 [pilon] Confirmed 125 of 294 bases (42.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10768_length_294_cov_33.445087:1-294 [pilon] Processing NODE_1935_length_1102_cov_1.765545:1-1102 [pilon] NODE_545_length_1863_cov_22.639495:1-1863 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 969, Coverage: 40, minDepth: 10 [pilon] Confirmed 1642 of 1863 bases (88.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_545_length_1863_cov_22.639495:1-1863 [pilon] Processing NODE_7196_length_460_cov_4.513274:1-460 [pilon] NODE_13113_length_243_cov_21.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13113_length_243_cov_21.852459:1-243 [pilon] Processing NODE_4726_length_641_cov_16.476923:1-641 [pilon] NODE_14320_length_243_cov_11.696721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14320_length_243_cov_11.696721:1-243 [pilon] Processing NODE_1628_length_1207_cov_20.483425:1-1207 [pilon] NODE_414_length_2027_cov_35.351522:1-2027 log: [pilon] frags shovill.bam: coverage 92 [pilon] Total Reads: 1667, Coverage: 92, minDepth: 23 [pilon] Confirmed 1769 of 2027 bases (87.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_414_length_2027_cov_35.351522:1-2027 [pilon] Processing NODE_1149_length_1418_cov_10.424056:1-1418 [pilon] NODE_11230_length_274_cov_17.287582:1-274 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 71, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 274 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11230_length_274_cov_17.287582:1-274 [pilon] Processing NODE_6622_length_495_cov_54.545455:1-495 [pilon] NODE_3203_length_832_cov_22.230661:1-832 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 518, Coverage: 60, minDepth: 15 [pilon] Confirmed 717 of 832 bases (86.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3203_length_832_cov_22.230661:1-832 [pilon] Processing NODE_1657_length_1198_cov_16.859796:1-1198 [pilon] NODE_11576_length_261_cov_18.635714:1-261 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 68, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11576_length_261_cov_18.635714:1-261 [pilon] Processing NODE_4005_length_715_cov_10.904040:1-715 [pilon] NODE_11452_length_265_cov_6.034722:1-265 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 22, Coverage: 3, minDepth: 5 [pilon] Confirmed 86 of 265 bases (32.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11452_length_265_cov_6.034722:1-265 [pilon] Processing NODE_2282_length_1014_cov_40.473684:1-1014 [pilon] NODE_13586_length_243_cov_17.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13586_length_243_cov_17.590164:1-243 [pilon] Processing NODE_7838_length_425_cov_35.194079:1-425 [pilon] NODE_562_length_1846_cov_3.784928:1-1846 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 171, Coverage: 12, minDepth: 5 [pilon] Confirmed 1555 of 1846 bases (84.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_562_length_1846_cov_3.784928:1-1846 [pilon] Processing NODE_9598_length_342_cov_13.325792:1-342 [pilon] NODE_50_length_3591_cov_17.192219:1-3591 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 1520, Coverage: 43, minDepth: 11 [pilon] Confirmed 3131 of 3591 bases (87.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_50_length_3591_cov_17.192219:1-3591 [pilon] Processing NODE_14679_length_243_cov_8.737705:1-243 [pilon] NODE_5366_length_587_cov_2.894850:1-587 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 38, Coverage: 8, minDepth: 5 [pilon] Confirmed 396 of 587 bases (67.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5366_length_587_cov_2.894850:1-587 [pilon] Processing NODE_4861_length_629_cov_38.149606:1-629 [pilon] NODE_14930_length_243_cov_6.393443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14930_length_243_cov_6.393443:1-243 [pilon] Processing NODE_12350_length_243_cov_32.081967:1-243 [pilon] NODE_986_length_1505_cov_0.885838:1-1505 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 42, Coverage: 4, minDepth: 5 [pilon] Confirmed 333 of 1505 bases (22.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_986_length_1505_cov_0.885838:1-1505 [pilon] Processing NODE_10052_length_323_cov_22.801980:1-323 [pilon] NODE_5287_length_593_cov_35.849576:1-593 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 369, Coverage: 55, minDepth: 14 [pilon] Confirmed 508 of 593 bases (85.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5287_length_593_cov_35.849576:1-593 [pilon] Processing NODE_3201_length_832_cov_41.950774:1-832 [pilon] NODE_14009_length_243_cov_14.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14009_length_243_cov_14.139344:1-243 [pilon] Processing NODE_12171_length_243_cov_37.950820:1-243 [pilon] NODE_355_length_2119_cov_2.141141:1-2119 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 124, Coverage: 7, minDepth: 5 [pilon] Confirmed 1454 of 2119 bases (68.62%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_355_length_2119_cov_2.141141:1-2119 [pilon] Processing NODE_9353_length_351_cov_36.869565:1-351 [pilon] NODE_4726_length_641_cov_16.476923:1-641 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 215, Coverage: 21, minDepth: 5 [pilon] Confirmed 513 of 641 bases (80.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4726_length_641_cov_16.476923:1-641 [pilon] Processing NODE_9068_length_363_cov_18.747934:1-363 [pilon] NODE_12732_length_243_cov_25.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12732_length_243_cov_25.803279:1-243 [pilon] Processing NODE_3243_length_826_cov_1.924823:1-826 [pilon] NODE_7677_length_434_cov_0.958466:1-434 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 114 of 434 bases (26.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7677_length_434_cov_0.958466:1-434 [pilon] Processing NODE_14792_length_243_cov_7.778689:1-243 [pilon] NODE_11291_length_273_cov_7.026316:1-273 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 26, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11291_length_273_cov_7.026316:1-273 [pilon] Processing NODE_7241_length_458_cov_0.997033:1-458 [pilon] NODE_7196_length_460_cov_4.513274:1-460 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 37, Coverage: 10, minDepth: 5 [pilon] Confirmed 336 of 460 bases (73.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7196_length_460_cov_4.513274:1-460 [pilon] Processing NODE_4527_length_659_cov_8.451673:1-659 [pilon] NODE_1149_length_1418_cov_10.424056:1-1418 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 349, Coverage: 32, minDepth: 8 [pilon] Confirmed 913 of 1418 bases (64.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1149_length_1418_cov_10.424056:1-1418 [pilon] Processing NODE_10565_length_303_cov_7.912088:1-303 [pilon] NODE_1935_length_1102_cov_1.765545:1-1102 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 56, Coverage: 6, minDepth: 5 [pilon] Confirmed 675 of 1102 bases (61.25%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1935_length_1102_cov_1.765545:1-1102 [pilon] Processing NODE_3931_length_724_cov_0.723051:1-724 [pilon] NODE_1628_length_1207_cov_20.483425:1-1207 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 550, Coverage: 35, minDepth: 9 [pilon] Confirmed 1111 of 1207 bases (92.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1628_length_1207_cov_20.483425:1-1207 [pilon] Processing NODE_6365_length_513_cov_0.839286:1-513 [pilon] NODE_6622_length_495_cov_54.545455:1-495 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 456, Coverage: 74, minDepth: 19 [pilon] Confirmed 425 of 495 bases (85.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6622_length_495_cov_54.545455:1-495 [pilon] Processing NODE_3057_length_861_cov_29.255405:1-861 [pilon] NODE_2282_length_1014_cov_40.473684:1-1014 log: [pilon] frags shovill.bam: coverage 97 [pilon] Total Reads: 855, Coverage: 97, minDepth: 24 [pilon] Confirmed 828 of 1014 bases (81.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2282_length_1014_cov_40.473684:1-1014 [pilon] Processing NODE_5146_length_606_cov_15.612371:1-606 [pilon] NODE_4005_length_715_cov_10.904040:1-715 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 159, Coverage: 10, minDepth: 5 [pilon] Confirmed 525 of 715 bases (73.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4005_length_715_cov_10.904040:1-715 [pilon] Processing NODE_12855_length_243_cov_24.475410:1-243 [pilon] NODE_9598_length_342_cov_13.325792:1-342 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 74, Coverage: 9, minDepth: 5 [pilon] Confirmed 259 of 342 bases (75.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9598_length_342_cov_13.325792:1-342 [pilon] Processing NODE_3656_length_761_cov_29.387500:1-761 [pilon] NODE_14679_length_243_cov_8.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14679_length_243_cov_8.737705:1-243 [pilon] Processing NODE_6229_length_522_cov_27.521197:1-522 [pilon] NODE_7838_length_425_cov_35.194079:1-425 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 276, Coverage: 16, minDepth: 5 [pilon] Confirmed 189 of 425 bases (44.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7838_length_425_cov_35.194079:1-425 [pilon] Processing NODE_14758_length_243_cov_8.049180:1-243 [pilon] NODE_10052_length_323_cov_22.801980:1-323 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 93, Coverage: 4, minDepth: 5 [pilon] Confirmed 132 of 323 bases (40.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10052_length_323_cov_22.801980:1-323 [pilon] Processing NODE_3708_length_753_cov_19.329114:1-753 [pilon] NODE_12350_length_243_cov_32.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12350_length_243_cov_32.081967:1-243 [pilon] Processing NODE_3775_length_744_cov_2.399679:1-744 [pilon] NODE_4861_length_629_cov_38.149606:1-629 log: [pilon] frags shovill.bam: coverage 77 [pilon] Total Reads: 452, Coverage: 77, minDepth: 19 [pilon] Confirmed 487 of 629 bases (77.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4861_length_629_cov_38.149606:1-629 [pilon] Processing NODE_901_length_1560_cov_13.270327:1-1560 [pilon] NODE_3201_length_832_cov_41.950774:1-832 log: [pilon] frags shovill.bam: coverage 94 [pilon] Total Reads: 711, Coverage: 94, minDepth: 24 [pilon] Confirmed 660 of 832 bases (79.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3201_length_832_cov_41.950774:1-832 [pilon] Processing NODE_8020_length_417_cov_23.574324:1-417 [pilon] NODE_1657_length_1198_cov_16.859796:1-1198 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 420, Coverage: 28, minDepth: 7 [pilon] Confirmed 936 of 1198 bases (78.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1657_length_1198_cov_16.859796:1-1198 [pilon] Processing NODE_6816_length_482_cov_2.335180:1-482 [pilon] NODE_9068_length_363_cov_18.747934:1-363 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 97, Coverage: 7, minDepth: 5 [pilon] Confirmed 150 of 363 bases (41.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9068_length_363_cov_18.747934:1-363 [pilon] Processing NODE_1046_length_1470_cov_21.551520:1-1470 [pilon] NODE_14792_length_243_cov_7.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14792_length_243_cov_7.778689:1-243 [pilon] Processing NODE_2264_length_1018_cov_11.680045:1-1018 [pilon] NODE_12171_length_243_cov_37.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12171_length_243_cov_37.950820:1-243 [pilon] Processing NODE_12915_length_243_cov_23.909836:1-243 [pilon] NODE_9353_length_351_cov_36.869565:1-351 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 184, Coverage: 23, minDepth: 6 [pilon] Confirmed 263 of 351 bases (74.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9353_length_351_cov_36.869565:1-351 [pilon] Processing NODE_7814_length_426_cov_24.685246:1-426 [pilon] NODE_10565_length_303_cov_7.912088:1-303 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 303 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10565_length_303_cov_7.912088:1-303 [pilon] Processing NODE_1942_length_1100_cov_0.713994:1-1100 [pilon] NODE_5146_length_606_cov_15.612371:1-606 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 149, Coverage: 20, minDepth: 5 [pilon] Confirmed 435 of 606 bases (71.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5146_length_606_cov_15.612371:1-606 [pilon] Processing NODE_1556_length_1238_cov_29.616831:1-1238 [pilon] NODE_3243_length_826_cov_1.924823:1-826 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 42, Coverage: 6, minDepth: 5 [pilon] Confirmed 456 of 826 bases (55.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3243_length_826_cov_1.924823:1-826 [pilon] Processing NODE_11970_length_246_cov_31.360000:1-246 [pilon] NODE_7241_length_458_cov_0.997033:1-458 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 16 of 458 bases (3.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7241_length_458_cov_0.997033:1-458 [pilon] Processing NODE_14424_length_243_cov_10.877049:1-243 [pilon] NODE_6229_length_522_cov_27.521197:1-522 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 250, Coverage: 24, minDepth: 6 [pilon] Confirmed 312 of 522 bases (59.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6229_length_522_cov_27.521197:1-522 [pilon] Processing NODE_5977_length_543_cov_1.253555:1-543 [pilon] NODE_3656_length_761_cov_29.387500:1-761 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 470, Coverage: 41, minDepth: 10 [pilon] Confirmed 668 of 761 bases (87.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3656_length_761_cov_29.387500:1-761 [pilon] Processing NODE_5628_length_568_cov_27.512304:1-568 [pilon] NODE_14758_length_243_cov_8.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14758_length_243_cov_8.049180:1-243 [pilon] Processing NODE_5877_length_549_cov_19.233645:1-549 [pilon] NODE_4527_length_659_cov_8.451673:1-659 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 129, Coverage: 11, minDepth: 5 [pilon] Confirmed 369 of 659 bases (55.99%) [pilon] Corrected 0 snps; 1 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4527_length_659_cov_8.451673:1-659 [pilon] Processing NODE_11635_length_258_cov_21.737226:1-258 [pilon] NODE_3931_length_724_cov_0.723051:1-724 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 24, Coverage: 4, minDepth: 5 [pilon] Confirmed 286 of 724 bases (39.50%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3931_length_724_cov_0.723051:1-724 [pilon] Processing NODE_12080_length_244_cov_21.991870:1-244 [pilon] NODE_3775_length_744_cov_2.399679:1-744 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 45, Coverage: 8, minDepth: 5 [pilon] Confirmed 461 of 744 bases (61.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3775_length_744_cov_2.399679:1-744 [pilon] Processing NODE_8112_length_412_cov_49.460481:1-412 [pilon] NODE_3708_length_753_cov_19.329114:1-753 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 323, Coverage: 39, minDepth: 10 [pilon] Confirmed 700 of 753 bases (92.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3708_length_753_cov_19.329114:1-753 [pilon] Processing NODE_10640_length_300_cov_13.748603:1-300 [pilon] NODE_8020_length_417_cov_23.574324:1-417 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 150, Coverage: 26, minDepth: 7 [pilon] Confirmed 345 of 417 bases (82.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8020_length_417_cov_23.574324:1-417 [pilon] Processing NODE_6605_length_497_cov_4.313830:1-497 [pilon] NODE_901_length_1560_cov_13.270327:1-1560 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 526, Coverage: 37, minDepth: 9 [pilon] Confirmed 1209 of 1560 bases (77.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_901_length_1560_cov_13.270327:1-1560 [pilon] Processing NODE_11311_length_271_cov_7.593333:1-271 [pilon] NODE_1046_length_1470_cov_21.551520:1-1470 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 669, Coverage: 56, minDepth: 14 [pilon] Confirmed 1042 of 1470 bases (70.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1046_length_1470_cov_21.551520:1-1470 [pilon] Processing NODE_13066_length_243_cov_22.262295:1-243 [pilon] NODE_6365_length_513_cov_0.839286:1-513 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 513 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6365_length_513_cov_0.839286:1-513 [pilon] Processing NODE_9262_length_355_cov_16.089744:1-355 [pilon] NODE_12855_length_243_cov_24.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 65, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12855_length_243_cov_24.475410:1-243 [pilon] Processing NODE_4762_length_638_cov_30.967118:1-638 [pilon] NODE_2264_length_1018_cov_11.680045:1-1018 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 271, Coverage: 26, minDepth: 7 [pilon] Confirmed 760 of 1018 bases (74.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2264_length_1018_cov_11.680045:1-1018 [pilon] Processing NODE_2080_length_1065_cov_1.256356:1-1065 [pilon] NODE_3057_length_861_cov_29.255405:1-861 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 525, Coverage: 64, minDepth: 16 [pilon] Confirmed 775 of 861 bases (90.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3057_length_861_cov_29.255405:1-861 [pilon] Processing NODE_1257_length_1360_cov_17.206618:1-1360 [pilon] NODE_1942_length_1100_cov_0.713994:1-1100 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 27, Coverage: 3, minDepth: 5 [pilon] Confirmed 206 of 1100 bases (18.73%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1942_length_1100_cov_0.713994:1-1100 [pilon] Processing NODE_6273_length_519_cov_25.997487:1-519 [pilon] NODE_6816_length_482_cov_2.335180:1-482 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 305 of 482 bases (63.28%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6816_length_482_cov_2.335180:1-482 [pilon] Processing NODE_13064_length_243_cov_22.262295:1-243 [pilon] NODE_12915_length_243_cov_23.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12915_length_243_cov_23.909836:1-243 [pilon] Processing NODE_12541_length_243_cov_28.442623:1-243 [pilon] NODE_5977_length_543_cov_1.253555:1-543 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 25, Coverage: 4, minDepth: 5 [pilon] Confirmed 219 of 543 bases (40.33%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5977_length_543_cov_1.253555:1-543 [pilon] Processing NODE_4960_length_621_cov_70.520000:1-621 [pilon] NODE_5628_length_568_cov_27.512304:1-568 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 292, Coverage: 40, minDepth: 10 [pilon] Confirmed 420 of 568 bases (73.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5628_length_568_cov_27.512304:1-568 [pilon] Processing NODE_5240_length_597_cov_15.743697:1-597 [pilon] NODE_7814_length_426_cov_24.685246:1-426 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 185, Coverage: 22, minDepth: 6 [pilon] Confirmed 297 of 426 bases (69.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7814_length_426_cov_24.685246:1-426 [pilon] Processing NODE_6350_length_514_cov_0.893130:1-514 [pilon] NODE_10640_length_300_cov_13.748603:1-300 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 59, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10640_length_300_cov_13.748603:1-300 [pilon] Processing NODE_10324_length_312_cov_21.319372:1-312 [pilon] NODE_5877_length_549_cov_19.233645:1-549 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 184, Coverage: 34, minDepth: 9 [pilon] Confirmed 493 of 549 bases (89.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5877_length_549_cov_19.233645:1-549 [pilon] Processing NODE_10743_length_296_cov_14.531429:1-296 [pilon] NODE_8112_length_412_cov_49.460481:1-412 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 312, Coverage: 57, minDepth: 14 [pilon] Confirmed 327 of 412 bases (79.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8112_length_412_cov_49.460481:1-412 [pilon] Processing NODE_8342_length_403_cov_0.677305:1-403 [pilon] NODE_11311_length_271_cov_7.593333:1-271 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 271 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11311_length_271_cov_7.593333:1-271 [pilon] Processing NODE_4283_length_683_cov_19.928826:1-683 [pilon] NODE_1556_length_1238_cov_29.616831:1-1238 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 842, Coverage: 55, minDepth: 14 [pilon] Confirmed 870 of 1238 bases (70.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1556_length_1238_cov_29.616831:1-1238 [pilon] Processing NODE_6318_length_516_cov_13.430380:1-516 [pilon] NODE_13066_length_243_cov_22.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13066_length_243_cov_22.262295:1-243 [pilon] Processing NODE_9618_length_341_cov_29.740909:1-341 [pilon] NODE_14424_length_243_cov_10.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14424_length_243_cov_10.877049:1-243 [pilon] Processing NODE_9475_length_347_cov_15.716814:1-347 [pilon] NODE_11970_length_246_cov_31.360000:1-246 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 94, Coverage: 11, minDepth: 5 [pilon] Confirmed 210 of 246 bases (85.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11970_length_246_cov_31.360000:1-246 [pilon] Processing NODE_5929_length_546_cov_1.501176:1-546 [pilon] NODE_11635_length_258_cov_21.737226:1-258 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 54, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11635_length_258_cov_21.737226:1-258 [pilon] Processing NODE_4201_length_694_cov_1.237347:1-694 [pilon] NODE_6605_length_497_cov_4.313830:1-497 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 42, Coverage: 10, minDepth: 5 [pilon] Confirmed 396 of 497 bases (79.68%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6605_length_497_cov_4.313830:1-497 [pilon] Processing NODE_10873_length_289_cov_12.065476:1-289 [pilon] NODE_2080_length_1065_cov_1.256356:1-1065 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 373 of 1065 bases (35.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2080_length_1065_cov_1.256356:1-1065 [pilon] Processing NODE_7123_length_464_cov_48.556851:1-464 [pilon] NODE_12080_length_244_cov_21.991870:1-244 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 244 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12080_length_244_cov_21.991870:1-244 [pilon] Processing NODE_9072_length_363_cov_16.409091:1-363 [pilon] NODE_6273_length_519_cov_25.997487:1-519 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 286, Coverage: 33, minDepth: 8 [pilon] Confirmed 344 of 519 bases (66.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6273_length_519_cov_25.997487:1-519 [pilon] Processing NODE_5064_length_613_cov_37.087398:1-613 [pilon] NODE_1257_length_1360_cov_17.206618:1-1360 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 514, Coverage: 35, minDepth: 9 [pilon] Confirmed 1174 of 1360 bases (86.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1257_length_1360_cov_17.206618:1-1360 [pilon] Processing NODE_1519_length_1251_cov_21.137168:1-1251 [pilon] NODE_9262_length_355_cov_16.089744:1-355 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 83, Coverage: 13, minDepth: 5 [pilon] Confirmed 193 of 355 bases (54.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9262_length_355_cov_16.089744:1-355 [pilon] Processing NODE_14514_length_243_cov_10.188525:1-243 [pilon] NODE_4762_length_638_cov_30.967118:1-638 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 391, Coverage: 49, minDepth: 12 [pilon] Confirmed 411 of 638 bases (64.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4762_length_638_cov_30.967118:1-638 [pilon] Processing NODE_1760_length_1158_cov_6.474446:1-1158 [pilon] NODE_4960_length_621_cov_70.520000:1-621 log: [pilon] frags shovill.bam: coverage 120 [pilon] Total Reads: 770, Coverage: 120, minDepth: 30 [pilon] Confirmed 547 of 621 bases (88.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4960_length_621_cov_70.520000:1-621 [pilon] Processing NODE_13343_length_243_cov_19.893443:1-243 [pilon] NODE_8342_length_403_cov_0.677305:1-403 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 403 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8342_length_403_cov_0.677305:1-403 [pilon] Processing NODE_9990_length_326_cov_19.565854:1-326 [pilon] NODE_10324_length_312_cov_21.319372:1-312 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 88, Coverage: 5, minDepth: 5 [pilon] Confirmed 155 of 312 bases (49.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10324_length_312_cov_21.319372:1-312 [pilon] Processing NODE_10245_length_315_cov_15.036082:1-315 [pilon] NODE_10743_length_296_cov_14.531429:1-296 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 59, Coverage: 3, minDepth: 5 [pilon] Confirmed 21 of 296 bases (7.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10743_length_296_cov_14.531429:1-296 [pilon] Processing NODE_11275_length_273_cov_12.000000:1-273 [pilon] NODE_13064_length_243_cov_22.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13064_length_243_cov_22.262295:1-243 [pilon] Processing NODE_12338_length_243_cov_32.475410:1-243 [pilon] NODE_6350_length_514_cov_0.893130:1-514 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 0 of 514 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6350_length_514_cov_0.893130:1-514 [pilon] Processing NODE_5219_length_600_cov_10.874739:1-600 [pilon] NODE_12541_length_243_cov_28.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12541_length_243_cov_28.442623:1-243 [pilon] Processing NODE_7951_length_420_cov_17.548495:1-420 [pilon] NODE_4283_length_683_cov_19.928826:1-683 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 255, Coverage: 33, minDepth: 8 [pilon] Confirmed 509 of 683 bases (74.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4283_length_683_cov_19.928826:1-683 [pilon] Processing NODE_4100_length_705_cov_2.640411:1-705 [pilon] NODE_9618_length_341_cov_29.740909:1-341 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 150, Coverage: 25, minDepth: 6 [pilon] Confirmed 245 of 341 bases (71.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9618_length_341_cov_29.740909:1-341 [pilon] Processing NODE_5143_length_606_cov_19.981443:1-606 [pilon] NODE_6318_length_516_cov_13.430380:1-516 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 124, Coverage: 10, minDepth: 5 [pilon] Confirmed 312 of 516 bases (60.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6318_length_516_cov_13.430380:1-516 [pilon] Processing NODE_5361_length_587_cov_22.821888:1-587 [pilon] NODE_5240_length_597_cov_15.743697:1-597 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 167, Coverage: 26, minDepth: 7 [pilon] Confirmed 481 of 597 bases (80.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5240_length_597_cov_15.743697:1-597 [pilon] Processing NODE_6737_length_487_cov_55.163934:1-487 [pilon] NODE_7123_length_464_cov_48.556851:1-464 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 370, Coverage: 69, minDepth: 17 [pilon] Confirmed 389 of 464 bases (83.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7123_length_464_cov_48.556851:1-464 [pilon] Processing NODE_92_length_3075_cov_25.264726:1-3075 [pilon] NODE_5064_length_613_cov_37.087398:1-613 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 437, Coverage: 43, minDepth: 11 [pilon] Confirmed 552 of 613 bases (90.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5064_length_613_cov_37.087398:1-613 [pilon] Processing NODE_10629_length_300_cov_18.759777:1-300 [pilon] NODE_1519_length_1251_cov_21.137168:1-1251 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 577, Coverage: 39, minDepth: 10 [pilon] Confirmed 1026 of 1251 bases (82.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1519_length_1251_cov_21.137168:1-1251 [pilon] Processing NODE_6606_length_497_cov_3.188830:1-497 [pilon] NODE_4201_length_694_cov_1.237347:1-694 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 230 of 694 bases (33.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4201_length_694_cov_1.237347:1-694 [pilon] Processing NODE_6919_length_476_cov_23.504225:1-476 [pilon] NODE_10873_length_289_cov_12.065476:1-289 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 48, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 289 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10873_length_289_cov_12.065476:1-289 [pilon] Processing NODE_2071_length_1067_cov_20.595137:1-1067 [pilon] NODE_5929_length_546_cov_1.501176:1-546 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 18, Coverage: 4, minDepth: 5 [pilon] Confirmed 189 of 546 bases (34.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5929_length_546_cov_1.501176:1-546 [pilon] Processing NODE_11_length_5824_cov_12.004559:1-5824 [pilon] NODE_9072_length_363_cov_16.409091:1-363 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 84, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 363 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9072_length_363_cov_16.409091:1-363 [pilon] Processing NODE_3454_length_791_cov_16.989552:1-791 [pilon] NODE_9475_length_347_cov_15.716814:1-347 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 82, Coverage: 13, minDepth: 5 [pilon] Confirmed 251 of 347 bases (72.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9475_length_347_cov_15.716814:1-347 [pilon] Processing NODE_9332_length_353_cov_21.590517:1-353 [pilon] NODE_13343_length_243_cov_19.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13343_length_243_cov_19.893443:1-243 [pilon] Processing NODE_1739_length_1166_cov_20.347368:1-1166 [pilon] NODE_9990_length_326_cov_19.565854:1-326 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 100, Coverage: 9, minDepth: 5 [pilon] Confirmed 222 of 326 bases (68.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9990_length_326_cov_19.565854:1-326 [pilon] Processing NODE_1138_length_1423_cov_15.115975:1-1423 [pilon] NODE_11275_length_273_cov_12.000000:1-273 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 38, Coverage: 3, minDepth: 5 [pilon] Confirmed 63 of 273 bases (23.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11275_length_273_cov_12.000000:1-273 [pilon] Processing NODE_9451_length_348_cov_13.361233:1-348 [pilon] NODE_10245_length_315_cov_15.036082:1-315 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 73, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 315 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10245_length_315_cov_15.036082:1-315 [pilon] Processing NODE_10837_length_291_cov_11.005882:1-291 [pilon] NODE_5219_length_600_cov_10.874739:1-600 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 128, Coverage: 16, minDepth: 5 [pilon] Confirmed 426 of 600 bases (71.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5219_length_600_cov_10.874739:1-600 [pilon] Processing NODE_733_length_1677_cov_2.825835:1-1677 [pilon] NODE_5361_length_587_cov_22.821888:1-587 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 244, Coverage: 36, minDepth: 9 [pilon] Confirmed 507 of 587 bases (86.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5361_length_587_cov_22.821888:1-587 [pilon] Processing NODE_3731_length_750_cov_28.100159:1-750 [pilon] NODE_4100_length_705_cov_2.640411:1-705 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 43, Coverage: 8, minDepth: 5 [pilon] Confirmed 437 of 705 bases (61.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4100_length_705_cov_2.640411:1-705 [pilon] Processing NODE_13292_length_243_cov_20.286885:1-243 [pilon] NODE_5143_length_606_cov_19.981443:1-606 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 233, Coverage: 33, minDepth: 8 [pilon] Confirmed 477 of 606 bases (78.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5143_length_606_cov_19.981443:1-606 [pilon] Processing NODE_12523_length_243_cov_28.778689:1-243 [pilon] NODE_14514_length_243_cov_10.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14514_length_243_cov_10.188525:1-243 [pilon] Processing NODE_9912_length_330_cov_8.186603:1-330 [pilon] NODE_1760_length_1158_cov_6.474446:1-1158 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 157, Coverage: 13, minDepth: 5 [pilon] Confirmed 664 of 1158 bases (57.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1760_length_1158_cov_6.474446:1-1158 [pilon] Processing NODE_10956_length_285_cov_26.914634:1-285 [pilon] NODE_12338_length_243_cov_32.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12338_length_243_cov_32.475410:1-243 [pilon] Processing NODE_343_length_2135_cov_19.745780:1-2135 [pilon] NODE_7951_length_420_cov_17.548495:1-420 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 107, Coverage: 5, minDepth: 5 [pilon] Confirmed 177 of 420 bases (42.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7951_length_420_cov_17.548495:1-420 [pilon] Processing NODE_11388_length_267_cov_28.089041:1-267 [pilon] NODE_92_length_3075_cov_25.264726:1-3075 log: [pilon] frags shovill.bam: coverage 74 [pilon] Total Reads: 1877, Coverage: 74, minDepth: 19 [pilon] Confirmed 2650 of 3075 bases (86.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_92_length_3075_cov_25.264726:1-3075 [pilon] Processing NODE_6425_length_509_cov_0.837629:1-509 [pilon] NODE_6737_length_487_cov_55.163934:1-487 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 440, Coverage: 78, minDepth: 20 [pilon] Confirmed 406 of 487 bases (83.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6737_length_487_cov_55.163934:1-487 [pilon] Processing NODE_12163_length_243_cov_38.655738:1-243 [pilon] NODE_1739_length_1166_cov_20.347368:1-1166 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 549, Coverage: 35, minDepth: 9 [pilon] Confirmed 1047 of 1166 bases (89.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1739_length_1166_cov_20.347368:1-1166 [pilon] Processing NODE_14261_length_243_cov_12.147541:1-243 [pilon] NODE_10837_length_291_cov_11.005882:1-291 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 32, Coverage: 2, minDepth: 5 [pilon] Confirmed 36 of 291 bases (12.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10837_length_291_cov_11.005882:1-291 [pilon] Processing NODE_3361_length_803_cov_9.219941:1-803 [pilon] NODE_10629_length_300_cov_18.759777:1-300 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 83, Coverage: 6, minDepth: 5 [pilon] Confirmed 186 of 300 bases (62.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10629_length_300_cov_18.759777:1-300 [pilon] Processing NODE_11315_length_270_cov_33.295302:1-270 [pilon] NODE_6606_length_497_cov_3.188830:1-497 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 33, Coverage: 7, minDepth: 5 [pilon] Confirmed 327 of 497 bases (65.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6606_length_497_cov_3.188830:1-497 [pilon] Processing NODE_11753_length_255_cov_16.619403:1-255 [pilon] NODE_1138_length_1423_cov_15.115975:1-1423 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 499, Coverage: 38, minDepth: 10 [pilon] Confirmed 1191 of 1423 bases (83.70%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1138_length_1423_cov_15.115975:1-1423 [pilon] Processing NODE_3154_length_841_cov_32.319444:1-841 [pilon] NODE_733_length_1677_cov_2.825835:1-1677 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 105, Coverage: 8, minDepth: 5 [pilon] Confirmed 946 of 1677 bases (56.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_733_length_1677_cov_2.825835:1-1677 [pilon] Processing NODE_8576_length_390_cov_8.784387:1-390 [pilon] NODE_2071_length_1067_cov_20.595137:1-1067 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 543, Coverage: 47, minDepth: 12 [pilon] Confirmed 748 of 1067 bases (70.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2071_length_1067_cov_20.595137:1-1067 [pilon] Processing NODE_1992_length_1088_cov_35.562565:1-1088 [pilon] NODE_3454_length_791_cov_16.989552:1-791 log: [pilon] NODE_6919_length_476_cov_23.504225:1-476 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 179, Coverage: 26, minDepth: 7 [pilon] Confirmed 431 of 476 bases (90.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6919_length_476_cov_23.504225:1-476 [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 285, Coverage: 46, minDepth: 12 [pilon] Confirmed 639 of 791 bases (80.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3454_length_791_cov_16.989552:1-791 [pilon] Processing NODE_15141_length_196_cov_52.706667:1-196 [pilon] Processing NODE_183_length_2559_cov_4.336341:1-2559 [pilon] NODE_12523_length_243_cov_28.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12523_length_243_cov_28.778689:1-243 [pilon] Processing NODE_6474_length_505_cov_21.770833:1-505 [pilon] NODE_9912_length_330_cov_8.186603:1-330 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 199 of 330 bases (60.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9912_length_330_cov_8.186603:1-330 [pilon] Processing NODE_1926_length_1105_cov_2.685976:1-1105 [pilon] NODE_9332_length_353_cov_21.590517:1-353 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 111, Coverage: 15, minDepth: 5 [pilon] Confirmed 243 of 353 bases (68.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9332_length_353_cov_21.590517:1-353 [pilon] Processing NODE_7297_length_454_cov_14.069069:1-454 [pilon] NODE_343_length_2135_cov_19.745780:1-2135 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 965, Coverage: 39, minDepth: 10 [pilon] Confirmed 1729 of 2135 bases (80.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_343_length_2135_cov_19.745780:1-2135 [pilon] Processing NODE_848_length_1599_cov_27.535859:1-1599 [pilon] NODE_9451_length_348_cov_13.361233:1-348 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 66, Coverage: 10, minDepth: 5 [pilon] Confirmed 261 of 348 bases (75.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9451_length_348_cov_13.361233:1-348 [pilon] Processing NODE_4176_length_696_cov_21.215652:1-696 [pilon] NODE_13292_length_243_cov_20.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13292_length_243_cov_20.286885:1-243 [pilon] Processing NODE_6853_length_480_cov_20.147632:1-480 [pilon] NODE_10956_length_285_cov_26.914634:1-285 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 108, Coverage: 8, minDepth: 5 [pilon] Confirmed 155 of 285 bases (54.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10956_length_285_cov_26.914634:1-285 [pilon] Processing NODE_8041_length_416_cov_15.172881:1-416 [pilon] NODE_6425_length_509_cov_0.837629:1-509 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 118 of 509 bases (23.18%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6425_length_509_cov_0.837629:1-509 [pilon] Processing NODE_5128_length_608_cov_1.400411:1-608 [pilon] NODE_3731_length_750_cov_28.100159:1-750 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 421, Coverage: 46, minDepth: 12 [pilon] Confirmed 679 of 750 bases (90.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3731_length_750_cov_28.100159:1-750 [pilon] Processing NODE_4359_length_675_cov_4.074007:1-675 [pilon] NODE_11_length_5824_cov_12.004559:1-5824 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 1417, Coverage: 20, minDepth: 5 [pilon] Confirmed 4543 of 5824 bases (78.00%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11_length_5824_cov_12.004559:1-5824 [pilon] Processing NODE_11021_length_282_cov_28.658385:1-282 [pilon] NODE_12163_length_243_cov_38.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 78, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12163_length_243_cov_38.655738:1-243 [pilon] Processing NODE_167_length_2633_cov_19.638535:1-2633 [pilon] NODE_3361_length_803_cov_9.219941:1-803 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 341, Coverage: 38, minDepth: 10 [pilon] Confirmed 452 of 803 bases (56.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3361_length_803_cov_9.219941:1-803 [pilon] Processing NODE_11690_length_257_cov_5.433824:1-257 [pilon] NODE_14261_length_243_cov_12.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14261_length_243_cov_12.147541:1-243 [pilon] Processing NODE_9259_length_355_cov_19.722222:1-355 [pilon] NODE_3154_length_841_cov_32.319444:1-841 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 549, Coverage: 71, minDepth: 18 [pilon] Confirmed 729 of 841 bases (86.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3154_length_841_cov_32.319444:1-841 [pilon] Processing NODE_5462_length_580_cov_1.383442:1-580 [pilon] NODE_11388_length_267_cov_28.089041:1-267 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 106, Coverage: 8, minDepth: 5 [pilon] Confirmed 159 of 267 bases (59.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11388_length_267_cov_28.089041:1-267 [pilon] Processing NODE_12968_length_243_cov_23.278689:1-243 [pilon] NODE_8576_length_390_cov_8.784387:1-390 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 50, Coverage: 11, minDepth: 5 [pilon] Confirmed 268 of 390 bases (68.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8576_length_390_cov_8.784387:1-390 [pilon] Processing NODE_5010_length_617_cov_74.947581:1-617 [pilon] NODE_11315_length_270_cov_33.295302:1-270 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 102, Coverage: 4, minDepth: 5 [pilon] Confirmed 88 of 270 bases (32.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11315_length_270_cov_33.295302:1-270 [pilon] Processing NODE_4894_length_627_cov_2.861660:1-627 [pilon] NODE_1992_length_1088_cov_35.562565:1-1088 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 831, Coverage: 51, minDepth: 13 [pilon] Confirmed 991 of 1088 bases (91.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1992_length_1088_cov_35.562565:1-1088 [pilon] Processing NODE_1545_length_1242_cov_10.351472:1-1242 [pilon] NODE_6474_length_505_cov_21.770833:1-505 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 204, Coverage: 27, minDepth: 7 [pilon] Confirmed 327 of 505 bases (64.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6474_length_505_cov_21.770833:1-505 [pilon] Processing NODE_8092_length_414_cov_2.255973:1-414 [pilon] NODE_1926_length_1105_cov_2.685976:1-1105 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 66, Coverage: 8, minDepth: 5 [pilon] Confirmed 439 of 1105 bases (39.73%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1926_length_1105_cov_2.685976:1-1105 [pilon] Processing NODE_11699_length_256_cov_6.511111:1-256 [pilon] NODE_11753_length_255_cov_16.619403:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 50, Coverage: 4, minDepth: 5 [pilon] Confirmed 96 of 255 bases (37.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11753_length_255_cov_16.619403:1-255 [pilon] Processing NODE_5488_length_578_cov_36.183807:1-578 [pilon] NODE_8041_length_416_cov_15.172881:1-416 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 114, Coverage: 14, minDepth: 5 [pilon] Confirmed 381 of 416 bases (91.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8041_length_416_cov_15.172881:1-416 [pilon] Processing NODE_12514_length_243_cov_28.868852:1-243 [pilon] NODE_848_length_1599_cov_27.535859:1-1599 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 930, Coverage: 65, minDepth: 16 [pilon] Confirmed 1350 of 1599 bases (84.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_848_length_1599_cov_27.535859:1-1599 [pilon] Processing NODE_9759_length_336_cov_13.976744:1-336 [pilon] NODE_5128_length_608_cov_1.400411:1-608 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 148 of 608 bases (24.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5128_length_608_cov_1.400411:1-608 [pilon] Processing NODE_11949_length_247_cov_20.484127:1-247 [pilon] NODE_183_length_2559_cov_4.336341:1-2559 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 266, Coverage: 13, minDepth: 5 [pilon] Confirmed 2050 of 2559 bases (80.11%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_183_length_2559_cov_4.336341:1-2559 [pilon] Processing NODE_3765_length_745_cov_28.849359:1-745 [pilon] NODE_15141_length_196_cov_52.706667:1-196 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 86, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 196 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15141_length_196_cov_52.706667:1-196 [pilon] Processing NODE_6521_length_502_cov_1.874016:1-502 [pilon] NODE_7297_length_454_cov_14.069069:1-454 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 90, Coverage: 11, minDepth: 5 [pilon] Confirmed 313 of 454 bases (68.94%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7297_length_454_cov_14.069069:1-454 [pilon] Processing NODE_15262_length_124_cov_3.000000:1-124 [pilon] NODE_11690_length_257_cov_5.433824:1-257 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 257 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11690_length_257_cov_5.433824:1-257 [pilon] Processing NODE_7562_length_440_cov_24.830721:1-440 [pilon] NODE_5462_length_580_cov_1.383442:1-580 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 23, Coverage: 4, minDepth: 5 [pilon] Confirmed 188 of 580 bases (32.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5462_length_580_cov_1.383442:1-580 [pilon] Processing NODE_4285_length_683_cov_11.097865:1-683 [pilon] NODE_9259_length_355_cov_19.722222:1-355 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 135, Coverage: 11, minDepth: 5 [pilon] Confirmed 297 of 355 bases (83.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9259_length_355_cov_19.722222:1-355 [pilon] Processing NODE_12381_length_243_cov_31.434426:1-243 [pilon] NODE_167_length_2633_cov_19.638535:1-2633 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 1178, Coverage: 52, minDepth: 13 [pilon] Confirmed 2325 of 2633 bases (88.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_167_length_2633_cov_19.638535:1-2633 [pilon] Processing NODE_11167_length_276_cov_32.716129:1-276 [pilon] NODE_4176_length_696_cov_21.215652:1-696 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 269, Coverage: 29, minDepth: 7 [pilon] Confirmed 657 of 696 bases (94.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4176_length_696_cov_21.215652:1-696 [pilon] Processing NODE_8367_length_402_cov_6.950178:1-402 [pilon] NODE_6853_length_480_cov_20.147632:1-480 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 168, Coverage: 18, minDepth: 5 [pilon] Confirmed 361 of 480 bases (75.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6853_length_480_cov_20.147632:1-480 [pilon] Processing NODE_4421_length_669_cov_11.888686:1-669 [pilon] NODE_4359_length_675_cov_4.074007:1-675 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 65, Coverage: 11, minDepth: 5 [pilon] Confirmed 543 of 675 bases (80.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4359_length_675_cov_4.074007:1-675 [pilon] Processing NODE_13447_length_243_cov_18.860656:1-243 [pilon] NODE_11021_length_282_cov_28.658385:1-282 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 96, Coverage: 13, minDepth: 5 [pilon] Confirmed 229 of 282 bases (81.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11021_length_282_cov_28.658385:1-282 [pilon] Processing NODE_7793_length_428_cov_2.586319:1-428 [pilon] NODE_5010_length_617_cov_74.947581:1-617 log: [pilon] frags shovill.bam: coverage 122 [pilon] Total Reads: 837, Coverage: 122, minDepth: 31 [pilon] Confirmed 542 of 617 bases (87.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5010_length_617_cov_74.947581:1-617 [pilon] Processing NODE_3563_length_775_cov_21.405199:1-775 [pilon] NODE_11699_length_256_cov_6.511111:1-256 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 22, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 256 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11699_length_256_cov_6.511111:1-256 [pilon] NODE_12968_length_243_cov_23.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_5075_length_612_cov_15.615071:1-612 [pilon] Finished processing NODE_12968_length_243_cov_23.278689:1-243 [pilon] Processing NODE_12516_length_243_cov_28.819672:1-243 [pilon] NODE_1545_length_1242_cov_10.351472:1-1242 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 313, Coverage: 23, minDepth: 6 [pilon] Confirmed 1060 of 1242 bases (85.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1545_length_1242_cov_10.351472:1-1242 [pilon] Processing NODE_10682_length_299_cov_7.455056:1-299 [pilon] NODE_8092_length_414_cov_2.255973:1-414 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 21, Coverage: 5, minDepth: 5 [pilon] Confirmed 232 of 414 bases (56.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8092_length_414_cov_2.255973:1-414 [pilon] Processing NODE_1395_length_1298_cov_19.516568:1-1298 [pilon] NODE_12514_length_243_cov_28.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 79, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12514_length_243_cov_28.868852:1-243 [pilon] Processing NODE_710_length_1698_cov_29.161065:1-1698 [pilon] NODE_9759_length_336_cov_13.976744:1-336 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 62, Coverage: 7, minDepth: 5 [pilon] Confirmed 206 of 336 bases (61.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9759_length_336_cov_13.976744:1-336 [pilon] Processing NODE_10352_length_311_cov_23.142105:1-311 [pilon] NODE_4894_length_627_cov_2.861660:1-627 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 37, Coverage: 8, minDepth: 5 [pilon] Confirmed 440 of 627 bases (70.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4894_length_627_cov_2.861660:1-627 [pilon] Processing NODE_9818_length_333_cov_23.264151:1-333 [pilon] NODE_11949_length_247_cov_20.484127:1-247 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 53, Coverage: 4, minDepth: 5 [pilon] Confirmed 108 of 247 bases (43.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11949_length_247_cov_20.484127:1-247 [pilon] Processing NODE_5699_length_563_cov_42.151584:1-563 [pilon] NODE_7562_length_440_cov_24.830721:1-440 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 197, Coverage: 22, minDepth: 6 [pilon] Confirmed 313 of 440 bases (71.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7562_length_440_cov_24.830721:1-440 [pilon] Processing NODE_3812_length_739_cov_15.915858:1-739 [pilon] NODE_5488_length_578_cov_36.183807:1-578 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 366, Coverage: 64, minDepth: 16 [pilon] Confirmed 454 of 578 bases (78.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5488_length_578_cov_36.183807:1-578 [pilon] Processing NODE_6982_length_473_cov_0.823864:1-473 [pilon] NODE_12381_length_243_cov_31.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12381_length_243_cov_31.434426:1-243 [pilon] Processing NODE_1617_length_1212_cov_1.749771:1-1212 [pilon] NODE_4285_length_683_cov_11.097865:1-683 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 162, Coverage: 19, minDepth: 5 [pilon] Confirmed 654 of 683 bases (95.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4285_length_683_cov_11.097865:1-683 [pilon] Processing NODE_4501_length_662_cov_1.624769:1-662 [pilon] NODE_11167_length_276_cov_32.716129:1-276 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 108, Coverage: 12, minDepth: 5 [pilon] Confirmed 191 of 276 bases (69.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11167_length_276_cov_32.716129:1-276 [pilon] Processing NODE_8179_length_409_cov_14.440972:1-409 [pilon] NODE_3765_length_745_cov_28.849359:1-745 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 473, Coverage: 36, minDepth: 9 [pilon] Confirmed 509 of 745 bases (68.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3765_length_745_cov_28.849359:1-745 [pilon] Processing NODE_5524_length_575_cov_37.372247:1-575 [pilon] NODE_15262_length_124_cov_3.000000:1-124 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 124 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15262_length_124_cov_3.000000:1-124 [pilon] Processing NODE_2648_length_938_cov_7.493268:1-938 [pilon] NODE_3563_length_775_cov_21.405199:1-775 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 336, Coverage: 14, minDepth: 5 [pilon] Confirmed 560 of 775 bases (72.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3563_length_775_cov_21.405199:1-775 [pilon] Processing NODE_7579_length_438_cov_39.504732:1-438 [pilon] NODE_10682_length_299_cov_7.455056:1-299 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 33, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 299 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10682_length_299_cov_7.455056:1-299 [pilon] Processing NODE_1023_length_1484_cov_9.287601:1-1484 [pilon] NODE_6521_length_502_cov_1.874016:1-502 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 22, Coverage: 5, minDepth: 5 [pilon] Confirmed 334 of 502 bases (66.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6521_length_502_cov_1.874016:1-502 [pilon] Processing NODE_9258_length_355_cov_20.350427:1-355 [pilon] NODE_5075_length_612_cov_15.615071:1-612 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 155, Coverage: 20, minDepth: 5 [pilon] Confirmed 492 of 612 bases (80.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5075_length_612_cov_15.615071:1-612 [pilon] Processing NODE_8628_length_387_cov_14.203008:1-387 [pilon] NODE_13447_length_243_cov_18.860656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13447_length_243_cov_18.860656:1-243 [pilon] Processing NODE_7148_length_462_cov_32.551320:1-462 [pilon] NODE_1395_length_1298_cov_19.516568:1-1298 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 567, Coverage: 40, minDepth: 10 [pilon] Confirmed 993 of 1298 bases (76.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1395_length_1298_cov_19.516568:1-1298 [pilon] Processing NODE_4959_length_622_cov_1.055888:1-622 [pilon] NODE_10352_length_311_cov_23.142105:1-311 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 92, Coverage: 18, minDepth: 5 [pilon] Confirmed 260 of 311 bases (83.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10352_length_311_cov_23.142105:1-311 [pilon] Processing NODE_1210_length_1388_cov_1.310182:1-1388 [pilon] NODE_8367_length_402_cov_6.950178:1-402 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 55, Coverage: 2, minDepth: 5 [pilon] Confirmed 110 of 402 bases (27.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8367_length_402_cov_6.950178:1-402 [pilon] Processing NODE_13032_length_243_cov_22.622951:1-243 [pilon] NODE_7793_length_428_cov_2.586319:1-428 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 24, Coverage: 7, minDepth: 5 [pilon] Confirmed 303 of 428 bases (70.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7793_length_428_cov_2.586319:1-428 [pilon] Processing NODE_3447_length_792_cov_2.219076:1-792 [pilon] NODE_4421_length_669_cov_11.888686:1-669 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 162, Coverage: 24, minDepth: 6 [pilon] Confirmed 424 of 669 bases (63.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4421_length_669_cov_11.888686:1-669 [pilon] Processing NODE_11144_length_278_cov_21.828025:1-278 [pilon] NODE_710_length_1698_cov_29.161065:1-1698 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 1097, Coverage: 71, minDepth: 18 [pilon] Confirmed 1540 of 1698 bases (90.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_710_length_1698_cov_29.161065:1-1698 [pilon] Processing NODE_9112_length_360_cov_57.514644:1-360 [pilon] NODE_5699_length_563_cov_42.151584:1-563 log: [pilon] frags shovill.bam: coverage 62 [pilon] Total Reads: 426, Coverage: 62, minDepth: 16 [pilon] Confirmed 486 of 563 bases (86.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5699_length_563_cov_42.151584:1-563 [pilon] Processing NODE_927_length_1542_cov_13.971147:1-1542 [pilon] NODE_12516_length_243_cov_28.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 89, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12516_length_243_cov_28.819672:1-243 [pilon] Processing NODE_7203_length_460_cov_0.592920:1-460 [pilon] NODE_8179_length_409_cov_14.440972:1-409 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 91, Coverage: 7, minDepth: 5 [pilon] Confirmed 278 of 409 bases (67.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8179_length_409_cov_14.440972:1-409 [pilon] Processing NODE_2926_length_887_cov_29.204961:1-887 [pilon] NODE_4501_length_662_cov_1.624769:1-662 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 35, Coverage: 6, minDepth: 5 [pilon] Confirmed 398 of 662 bases (60.12%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4501_length_662_cov_1.624769:1-662 [pilon] Processing NODE_8086_length_414_cov_14.754266:1-414 [pilon] NODE_3812_length_739_cov_15.915858:1-739 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 296, Coverage: 33, minDepth: 8 [pilon] Confirmed 687 of 739 bases (92.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3812_length_739_cov_15.915858:1-739 [pilon] Processing NODE_4526_length_659_cov_11.570632:1-659 [pilon] NODE_9818_length_333_cov_23.264151:1-333 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 110, Coverage: 5, minDepth: 5 [pilon] Confirmed 141 of 333 bases (42.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9818_length_333_cov_23.264151:1-333 [pilon] Processing NODE_13688_length_243_cov_16.516393:1-243 [pilon] NODE_1617_length_1212_cov_1.749771:1-1212 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 66, Coverage: 7, minDepth: 5 [pilon] Confirmed 651 of 1212 bases (53.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1617_length_1212_cov_1.749771:1-1212 [pilon] Processing NODE_7393_length_449_cov_0.618902:1-449 [pilon] NODE_6982_length_473_cov_0.823864:1-473 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 473 bases (27.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6982_length_473_cov_0.823864:1-473 [pilon] Processing NODE_7490_length_444_cov_0.448916:1-444 [pilon] NODE_7579_length_438_cov_39.504732:1-438 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 300, Coverage: 45, minDepth: 11 [pilon] Confirmed 403 of 438 bases (92.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7579_length_438_cov_39.504732:1-438 [pilon] Processing NODE_11739_length_255_cov_20.208955:1-255 [pilon] NODE_1023_length_1484_cov_9.287601:1-1484 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 389, Coverage: 23, minDepth: 6 [pilon] Confirmed 1053 of 1484 bases (70.96%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1023_length_1484_cov_9.287601:1-1484 [pilon] Processing NODE_448_length_1974_cov_1.509984:1-1974 [pilon] NODE_8628_length_387_cov_14.203008:1-387 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 88, Coverage: 16, minDepth: 5 [pilon] Confirmed 308 of 387 bases (79.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8628_length_387_cov_14.203008:1-387 [pilon] Processing NODE_14114_length_243_cov_13.385246:1-243 [pilon] NODE_13032_length_243_cov_22.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13032_length_243_cov_22.622951:1-243 [pilon] Processing NODE_4897_length_626_cov_30.566337:1-626 [pilon] NODE_9258_length_355_cov_20.350427:1-355 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 96, Coverage: 14, minDepth: 5 [pilon] Confirmed 294 of 355 bases (82.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9258_length_355_cov_20.350427:1-355 [pilon] Processing NODE_7505_length_443_cov_1.819876:1-443 [pilon] NODE_2648_length_938_cov_7.493268:1-938 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 170, Coverage: 19, minDepth: 5 [pilon] Confirmed 563 of 938 bases (60.02%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2648_length_938_cov_7.493268:1-938 [pilon] Processing NODE_144_length_2760_cov_19.953013:1-2760 [pilon] NODE_5524_length_575_cov_37.372247:1-575 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 413, Coverage: 60, minDepth: 15 [pilon] Confirmed 515 of 575 bases (89.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5524_length_575_cov_37.372247:1-575 [pilon] Processing NODE_14825_length_243_cov_7.459016:1-243 [pilon] NODE_9112_length_360_cov_57.514644:1-360 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 289, Coverage: 49, minDepth: 12 [pilon] Confirmed 320 of 360 bases (88.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9112_length_360_cov_57.514644:1-360 [pilon] Processing NODE_6833_length_481_cov_15.913889:1-481 [pilon] NODE_8086_length_414_cov_14.754266:1-414 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 102, Coverage: 12, minDepth: 5 [pilon] Confirmed 340 of 414 bases (82.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8086_length_414_cov_14.754266:1-414 [pilon] Processing NODE_620_length_1782_cov_23.656231:1-1782 [pilon] NODE_1210_length_1388_cov_1.310182:1-1388 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 54, Coverage: 5, minDepth: 5 [pilon] Confirmed 613 of 1388 bases (44.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1210_length_1388_cov_1.310182:1-1388 [pilon] Processing NODE_1351_length_1319_cov_14.333890:1-1319 [pilon] NODE_2926_length_887_cov_29.204961:1-887 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 551, Coverage: 55, minDepth: 14 [pilon] Confirmed 667 of 887 bases (75.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2926_length_887_cov_29.204961:1-887 [pilon] Processing NODE_14141_length_243_cov_13.204918:1-243 [pilon] NODE_4959_length_622_cov_1.055888:1-622 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 97 of 622 bases (15.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4959_length_622_cov_1.055888:1-622 [pilon] Processing NODE_7990_length_419_cov_1.016779:1-419 [pilon] NODE_11144_length_278_cov_21.828025:1-278 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 73, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 278 bases (46.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11144_length_278_cov_21.828025:1-278 [pilon] Processing NODE_13331_length_243_cov_19.967213:1-243 [pilon] NODE_7148_length_462_cov_32.551320:1-462 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 278, Coverage: 37, minDepth: 9 [pilon] Confirmed 415 of 462 bases (89.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7148_length_462_cov_32.551320:1-462 [pilon] Processing NODE_12040_length_246_cov_8.072000:1-246 [pilon] NODE_3447_length_792_cov_2.219076:1-792 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 47, Coverage: 7, minDepth: 5 [pilon] Confirmed 523 of 792 bases (66.04%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3447_length_792_cov_2.219076:1-792 [pilon] Processing NODE_14783_length_243_cov_7.877049:1-243 [pilon] NODE_11739_length_255_cov_20.208955:1-255 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11739_length_255_cov_20.208955:1-255 [pilon] Processing NODE_11196_length_276_cov_14.154839:1-276 [pilon] NODE_7203_length_460_cov_0.592920:1-460 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 9, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 460 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7203_length_460_cov_0.592920:1-460 [pilon] Processing NODE_6406_length_510_cov_12.691517:1-510 [pilon] NODE_448_length_1974_cov_1.509984:1-1974 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 92, Coverage: 6, minDepth: 5 [pilon] Confirmed 1113 of 1974 bases (56.38%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_448_length_1974_cov_1.509984:1-1974 [pilon] Processing NODE_3335_length_808_cov_1.901019:1-808 [pilon] NODE_4526_length_659_cov_11.570632:1-659 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 185, Coverage: 24, minDepth: 6 [pilon] Confirmed 568 of 659 bases (86.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4526_length_659_cov_11.570632:1-659 [pilon] Processing NODE_4708_length_643_cov_0.605364:1-643 [pilon] NODE_927_length_1542_cov_13.971147:1-1542 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 552, Coverage: 43, minDepth: 11 [pilon] Confirmed 995 of 1542 bases (64.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_927_length_1542_cov_13.971147:1-1542 [pilon] Processing NODE_13897_length_243_cov_14.934426:1-243 [pilon] NODE_14114_length_243_cov_13.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14114_length_243_cov_13.385246:1-243 [pilon] Processing NODE_6027_length_538_cov_19.177458:1-538 [pilon] NODE_13688_length_243_cov_16.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13688_length_243_cov_16.516393:1-243 [pilon] Processing NODE_5300_length_593_cov_0.584746:1-593 [pilon] NODE_7393_length_449_cov_0.618902:1-449 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 58 of 449 bases (12.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7393_length_449_cov_0.618902:1-449 [pilon] Processing NODE_2303_length_1010_cov_9.800900:1-1010 [pilon] NODE_7505_length_443_cov_1.819876:1-443 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 57 of 443 bases (12.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7505_length_443_cov_1.819876:1-443 [pilon] Processing NODE_12228_length_243_cov_35.409836:1-243 [pilon] NODE_4897_length_626_cov_30.566337:1-626 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 382, Coverage: 45, minDepth: 11 [pilon] Confirmed 512 of 626 bases (81.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4897_length_626_cov_30.566337:1-626 [pilon] Processing NODE_11570_length_261_cov_23.278571:1-261 [pilon] NODE_7490_length_444_cov_0.448916:1-444 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 54 of 444 bases (12.16%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7490_length_444_cov_0.448916:1-444 [pilon] Processing NODE_8033_length_417_cov_5.905405:1-417 [pilon] NODE_6833_length_481_cov_15.913889:1-481 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 113, Coverage: 16, minDepth: 5 [pilon] Confirmed 285 of 481 bases (59.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6833_length_481_cov_15.913889:1-481 [pilon] Processing NODE_1571_length_1230_cov_3.458070:1-1230 [pilon] NODE_14825_length_243_cov_7.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14825_length_243_cov_7.459016:1-243 [pilon] Processing NODE_10979_length_285_cov_15.896341:1-285 [pilon] NODE_620_length_1782_cov_23.656231:1-1782 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 1110, Coverage: 67, minDepth: 17 [pilon] Confirmed 1266 of 1782 bases (71.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_620_length_1782_cov_23.656231:1-1782 [pilon] Processing NODE_2472_length_972_cov_17.981199:1-972 [pilon] NODE_13331_length_243_cov_19.967213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13331_length_243_cov_19.967213:1-243 [pilon] Processing NODE_13281_length_243_cov_20.352459:1-243 [pilon] NODE_14141_length_243_cov_13.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14141_length_243_cov_13.204918:1-243 [pilon] Processing NODE_1910_length_1110_cov_9.422649:1-1110 [pilon] NODE_11196_length_276_cov_14.154839:1-276 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 44, Coverage: 3, minDepth: 5 [pilon] Confirmed 99 of 276 bases (35.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11196_length_276_cov_14.154839:1-276 [pilon] Processing NODE_12252_length_243_cov_34.606557:1-243 [pilon] NODE_144_length_2760_cov_19.953013:1-2760 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 1377, Coverage: 40, minDepth: 10 [pilon] Confirmed 2338 of 2760 bases (84.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_144_length_2760_cov_19.953013:1-2760 [pilon] Processing NODE_1192_length_1401_cov_15.375000:1-1401 [pilon] NODE_7990_length_419_cov_1.016779:1-419 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 27 of 419 bases (6.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7990_length_419_cov_1.016779:1-419 [pilon] Processing NODE_4900_length_626_cov_20.439604:1-626 [pilon] NODE_6406_length_510_cov_12.691517:1-510 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 110, Coverage: 18, minDepth: 5 [pilon] Confirmed 372 of 510 bases (72.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6406_length_510_cov_12.691517:1-510 [pilon] Processing NODE_2122_length_1053_cov_16.752146:1-1053 [pilon] NODE_3335_length_808_cov_1.901019:1-808 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 34, Coverage: 5, minDepth: 5 [pilon] Confirmed 404 of 808 bases (50.00%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3335_length_808_cov_1.901019:1-808 [pilon] Processing NODE_13709_length_243_cov_16.344262:1-243 [pilon] NODE_12040_length_246_cov_8.072000:1-246 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12040_length_246_cov_8.072000:1-246 [pilon] Processing NODE_1528_length_1249_cov_3.004433:1-1249 [pilon] NODE_14783_length_243_cov_7.877049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14783_length_243_cov_7.877049:1-243 [pilon] Processing NODE_5903_length_548_cov_0.793911:1-548 [pilon] NODE_1351_length_1319_cov_14.333890:1-1319 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 385, Coverage: 30, minDepth: 8 [pilon] Confirmed 1067 of 1319 bases (80.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1351_length_1319_cov_14.333890:1-1319 [pilon] Processing NODE_469_length_1948_cov_2.909141:1-1948 [pilon] NODE_5300_length_593_cov_0.584746:1-593 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 53 of 593 bases (8.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5300_length_593_cov_0.584746:1-593 [pilon] Processing NODE_9656_length_339_cov_21.564220:1-339 [pilon] NODE_12228_length_243_cov_35.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12228_length_243_cov_35.409836:1-243 [pilon] Processing NODE_11337_length_270_cov_17.805369:1-270 [pilon] NODE_10979_length_285_cov_15.896341:1-285 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 59, Coverage: 3, minDepth: 5 [pilon] Confirmed 125 of 285 bases (43.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10979_length_285_cov_15.896341:1-285 [pilon] Processing NODE_5023_length_617_cov_4.578629:1-617 [pilon] NODE_1571_length_1230_cov_3.458070:1-1230 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 110, Coverage: 12, minDepth: 5 [pilon] Confirmed 949 of 1230 bases (77.15%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1571_length_1230_cov_3.458070:1-1230 [pilon] Processing NODE_12115_length_243_cov_44.983607:1-243 [pilon] NODE_13897_length_243_cov_14.934426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13897_length_243_cov_14.934426:1-243 [pilon] Processing NODE_10183_length_318_cov_14.274112:1-318 [pilon] NODE_4708_length_643_cov_0.605364:1-643 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 52 of 643 bases (8.09%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4708_length_643_cov_0.605364:1-643 [pilon] Processing NODE_4014_length_714_cov_15.079258:1-714 [pilon] NODE_13281_length_243_cov_20.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13281_length_243_cov_20.352459:1-243 [pilon] Processing NODE_14315_length_243_cov_11.729508:1-243 [pilon] NODE_2472_length_972_cov_17.981199:1-972 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 376, Coverage: 29, minDepth: 7 [pilon] Confirmed 734 of 972 bases (75.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2472_length_972_cov_17.981199:1-972 [pilon] Processing NODE_8233_length_407_cov_9.555944:1-407 [pilon] NODE_6027_length_538_cov_19.177458:1-538 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 194, Coverage: 13, minDepth: 5 [pilon] Confirmed 391 of 538 bases (72.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6027_length_538_cov_19.177458:1-538 [pilon] Processing NODE_1920_length_1107_cov_1.265720:1-1107 [pilon] NODE_2303_length_1010_cov_9.800900:1-1010 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 184, Coverage: 14, minDepth: 5 [pilon] Confirmed 716 of 1010 bases (70.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2303_length_1010_cov_9.800900:1-1010 [pilon] Processing NODE_1540_length_1244_cov_12.484417:1-1244 [pilon] NODE_12252_length_243_cov_34.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 94, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12252_length_243_cov_34.606557:1-243 [pilon] Processing NODE_12861_length_243_cov_24.385246:1-243 [pilon] NODE_8033_length_417_cov_5.905405:1-417 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 45, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 417 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8033_length_417_cov_5.905405:1-417 [pilon] Processing NODE_3685_length_757_cov_1.407233:1-757 [pilon] NODE_11570_length_261_cov_23.278571:1-261 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 77, Coverage: 9, minDepth: 5 [pilon] Confirmed 217 of 261 bases (83.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11570_length_261_cov_23.278571:1-261 [pilon] Processing NODE_11873_length_250_cov_7.147287:1-250 [pilon] NODE_1192_length_1401_cov_15.375000:1-1401 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 493, Coverage: 38, minDepth: 10 [pilon] Confirmed 1213 of 1401 bases (86.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1192_length_1401_cov_15.375000:1-1401 [pilon] Processing NODE_11434_length_266_cov_23.744828:1-266 [pilon] NODE_1910_length_1110_cov_9.422649:1-1110 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 227, Coverage: 22, minDepth: 6 [pilon] Confirmed 802 of 1110 bases (72.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1910_length_1110_cov_9.422649:1-1110 [pilon] Processing NODE_6924_length_476_cov_8.180282:1-476 [pilon] NODE_2122_length_1053_cov_16.752146:1-1053 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 362, Coverage: 28, minDepth: 7 [pilon] Confirmed 921 of 1053 bases (87.46%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2122_length_1053_cov_16.752146:1-1053 [pilon] Processing NODE_14004_length_243_cov_14.163934:1-243 [pilon] NODE_5903_length_548_cov_0.793911:1-548 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 111 of 548 bases (20.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5903_length_548_cov_0.793911:1-548 [pilon] Processing NODE_14907_length_243_cov_6.606557:1-243 [pilon] NODE_13709_length_243_cov_16.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13709_length_243_cov_16.344262:1-243 [pilon] Processing NODE_10095_length_321_cov_20.765000:1-321 [pilon] NODE_12115_length_243_cov_44.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 91, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12115_length_243_cov_44.983607:1-243 [pilon] Processing NODE_11276_length_273_cov_11.967105:1-273 [pilon] NODE_11337_length_270_cov_17.805369:1-270 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 44, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 270 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11337_length_270_cov_17.805369:1-270 [pilon] Processing NODE_3816_length_738_cov_46.724473:1-738 [pilon] NODE_9656_length_339_cov_21.564220:1-339 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 106, Coverage: 16, minDepth: 5 [pilon] Confirmed 262 of 339 bases (77.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9656_length_339_cov_21.564220:1-339 [pilon] Processing NODE_1437_length_1286_cov_1.151931:1-1286 [pilon] NODE_5023_length_617_cov_4.578629:1-617 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 60, Coverage: 12, minDepth: 5 [pilon] Confirmed 508 of 617 bases (82.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5023_length_617_cov_4.578629:1-617 [pilon] Processing NODE_5823_length_554_cov_2.501155:1-554 [pilon] NODE_10183_length_318_cov_14.274112:1-318 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 70, Coverage: 2, minDepth: 5 [pilon] Confirmed 43 of 318 bases (13.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10183_length_318_cov_14.274112:1-318 [pilon] Processing NODE_4040_length_711_cov_18.108475:1-711 [pilon] NODE_4900_length_626_cov_20.439604:1-626 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 240, Coverage: 27, minDepth: 7 [pilon] Confirmed 584 of 626 bases (93.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4900_length_626_cov_20.439604:1-626 [pilon] Processing NODE_6194_length_524_cov_50.647643:1-524 [pilon] NODE_14315_length_243_cov_11.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14315_length_243_cov_11.729508:1-243 [pilon] Processing NODE_2172_length_1040_cov_41.737758:1-1040 [pilon] NODE_8233_length_407_cov_9.555944:1-407 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 86, Coverage: 4, minDepth: 5 [pilon] Confirmed 182 of 407 bases (44.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8233_length_407_cov_9.555944:1-407 [pilon] Processing NODE_740_length_1672_cov_26.618311:1-1672 [pilon] NODE_1528_length_1249_cov_3.004433:1-1249 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 79, Coverage: 8, minDepth: 5 [pilon] Confirmed 765 of 1249 bases (61.25%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1528_length_1249_cov_3.004433:1-1249 [pilon] Processing NODE_6939_length_475_cov_10.819209:1-475 [pilon] NODE_469_length_1948_cov_2.909141:1-1948 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 174, Coverage: 11, minDepth: 5 [pilon] Confirmed 1639 of 1948 bases (84.14%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_469_length_1948_cov_2.909141:1-1948 [pilon] Processing NODE_7363_length_450_cov_15.738602:1-450 [pilon] NODE_4014_length_714_cov_15.079258:1-714 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 189, Coverage: 22, minDepth: 6 [pilon] Confirmed 519 of 714 bases (72.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4014_length_714_cov_15.079258:1-714 [pilon] Processing NODE_12672_length_243_cov_26.565574:1-243 [pilon] NODE_12861_length_243_cov_24.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 59, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12861_length_243_cov_24.385246:1-243 [pilon] Processing NODE_10201_length_317_cov_23.204082:1-317 [pilon] NODE_11434_length_266_cov_23.744828:1-266 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 65, Coverage: 4, minDepth: 5 [pilon] Confirmed 72 of 266 bases (27.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11434_length_266_cov_23.744828:1-266 [pilon] Processing NODE_9153_length_360_cov_9.012552:1-360 [pilon] NODE_6924_length_476_cov_8.180282:1-476 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 63, Coverage: 7, minDepth: 5 [pilon] Confirmed 291 of 476 bases (61.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6924_length_476_cov_8.180282:1-476 [pilon] Processing NODE_14845_length_243_cov_7.237705:1-243 [pilon] NODE_1920_length_1107_cov_1.265720:1-1107 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 38, Coverage: 4, minDepth: 5 [pilon] Confirmed 387 of 1107 bases (34.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1920_length_1107_cov_1.265720:1-1107 [pilon] Processing NODE_2887_length_895_cov_15.082687:1-895 [pilon] NODE_3685_length_757_cov_1.407233:1-757 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 26, Coverage: 4, minDepth: 5 [pilon] Confirmed 239 of 757 bases (31.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3685_length_757_cov_1.407233:1-757 [pilon] Processing NODE_4733_length_641_cov_0.788462:1-641 [pilon] NODE_1540_length_1244_cov_12.484417:1-1244 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 349, Coverage: 23, minDepth: 6 [pilon] Confirmed 1085 of 1244 bases (87.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1540_length_1244_cov_12.484417:1-1244 [pilon] Processing NODE_13762_length_243_cov_15.950820:1-243 [pilon] NODE_11873_length_250_cov_7.147287:1-250 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 21, Coverage: 3, minDepth: 5 [pilon] Confirmed 42 of 250 bases (16.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11873_length_250_cov_7.147287:1-250 [pilon] Processing NODE_15068_length_237_cov_26.775862:1-237 [pilon] NODE_14907_length_243_cov_6.606557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14907_length_243_cov_6.606557:1-243 [pilon] Processing NODE_10026_length_324_cov_22.172414:1-324 [pilon] NODE_14004_length_243_cov_14.163934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14004_length_243_cov_14.163934:1-243 [pilon] Processing NODE_7803_length_427_cov_16.506536:1-427 [pilon] NODE_5823_length_554_cov_2.501155:1-554 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 429 of 554 bases (77.44%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5823_length_554_cov_2.501155:1-554 [pilon] Processing NODE_2367_length_998_cov_17.794755:1-998 [pilon] NODE_11276_length_273_cov_11.967105:1-273 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11276_length_273_cov_11.967105:1-273 [pilon] Processing NODE_15050_length_240_cov_42.067227:1-240 [pilon] NODE_3816_length_738_cov_46.724473:1-738 log: [pilon] frags shovill.bam: coverage 97 [pilon] Total Reads: 667, Coverage: 97, minDepth: 24 [pilon] Confirmed 627 of 738 bases (84.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3816_length_738_cov_46.724473:1-738 [pilon] Processing NODE_10609_length_300_cov_26.692737:1-300 [pilon] NODE_4040_length_711_cov_18.108475:1-711 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 249, Coverage: 29, minDepth: 7 [pilon] Confirmed 600 of 711 bases (84.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4040_length_711_cov_18.108475:1-711 [pilon] Processing NODE_8665_length_384_cov_16.193916:1-384 [pilon] NODE_10095_length_321_cov_20.765000:1-321 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 94, Coverage: 11, minDepth: 5 [pilon] Confirmed 211 of 321 bases (65.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10095_length_321_cov_20.765000:1-321 [pilon] Processing NODE_12945_length_243_cov_23.467213:1-243 [pilon] NODE_740_length_1672_cov_26.618311:1-1672 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 1001, Coverage: 50, minDepth: 13 [pilon] Confirmed 1469 of 1672 bases (87.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_740_length_1672_cov_26.618311:1-1672 [pilon] Processing NODE_2049_length_1072_cov_20.855941:1-1072 [pilon] NODE_2172_length_1040_cov_41.737758:1-1040 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 876, Coverage: 85, minDepth: 21 [pilon] Confirmed 935 of 1040 bases (89.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2172_length_1040_cov_41.737758:1-1040 [pilon] Processing NODE_10990_length_285_cov_8.945122:1-285 [pilon] NODE_6939_length_475_cov_10.819209:1-475 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 98, Coverage: 13, minDepth: 5 [pilon] Confirmed 398 of 475 bases (83.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6939_length_475_cov_10.819209:1-475 [pilon] Processing NODE_7832_length_426_cov_0.921311:1-426 [pilon] NODE_12672_length_243_cov_26.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12672_length_243_cov_26.565574:1-243 [pilon] Processing NODE_691_length_1709_cov_24.529597:1-1709 [pilon] NODE_6194_length_524_cov_50.647643:1-524 log: [pilon] frags shovill.bam: coverage 73 [pilon] Total Reads: 458, Coverage: 73, minDepth: 18 [pilon] Confirmed 448 of 524 bases (85.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6194_length_524_cov_50.647643:1-524 [pilon] Processing NODE_2460_length_975_cov_22.543326:1-975 [pilon] NODE_10201_length_317_cov_23.204082:1-317 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 81, Coverage: 6, minDepth: 5 [pilon] Confirmed 152 of 317 bases (47.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10201_length_317_cov_23.204082:1-317 [pilon] Processing NODE_1828_length_1135_cov_14.869822:1-1135 [pilon] NODE_7363_length_450_cov_15.738602:1-450 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 117, Coverage: 16, minDepth: 5 [pilon] Confirmed 364 of 450 bases (80.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7363_length_450_cov_15.738602:1-450 [pilon] Processing NODE_1755_length_1159_cov_2.101156:1-1159 [pilon] NODE_1437_length_1286_cov_1.151931:1-1286 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 47, Coverage: 5, minDepth: 5 [pilon] Confirmed 547 of 1286 bases (42.53%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1437_length_1286_cov_1.151931:1-1286 [pilon] Processing NODE_7676_length_434_cov_9.575080:1-434 [pilon] NODE_9153_length_360_cov_9.012552:1-360 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 58, Coverage: 2, minDepth: 5 [pilon] Confirmed 74 of 360 bases (20.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9153_length_360_cov_9.012552:1-360 [pilon] Processing NODE_14291_length_243_cov_11.918033:1-243 [pilon] NODE_13762_length_243_cov_15.950820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13762_length_243_cov_15.950820:1-243 [pilon] Processing NODE_5603_length_570_cov_21.129176:1-570 [pilon] NODE_14845_length_243_cov_7.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14845_length_243_cov_7.237705:1-243 [pilon] Processing NODE_3516_length_781_cov_9.856061:1-781 [pilon] NODE_2887_length_895_cov_15.082687:1-895 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 277, Coverage: 40, minDepth: 10 [pilon] Confirmed 583 of 895 bases (65.14%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2887_length_895_cov_15.082687:1-895 [pilon] Processing NODE_10841_length_291_cov_9.435294:1-291 [pilon] NODE_10026_length_324_cov_22.172414:1-324 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 88, Coverage: 3, minDepth: 5 [pilon] Confirmed 87 of 324 bases (26.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10026_length_324_cov_22.172414:1-324 [pilon] Processing NODE_7100_length_465_cov_12.584302:1-465 [pilon] NODE_7803_length_427_cov_16.506536:1-427 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 115, Coverage: 18, minDepth: 5 [pilon] Confirmed 321 of 427 bases (75.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7803_length_427_cov_16.506536:1-427 [pilon] Processing NODE_8840_length_375_cov_14.716535:1-375 [pilon] NODE_15068_length_237_cov_26.775862:1-237 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 63, Coverage: 5, minDepth: 5 [pilon] Confirmed 129 of 237 bases (54.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15068_length_237_cov_26.775862:1-237 [pilon] Processing NODE_13024_length_243_cov_22.688525:1-243 [pilon] NODE_4733_length_641_cov_0.788462:1-641 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 116 of 641 bases (18.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4733_length_641_cov_0.788462:1-641 [pilon] Processing NODE_8696_length_382_cov_27.524904:1-382 [pilon] NODE_10609_length_300_cov_26.692737:1-300 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 94, Coverage: 7, minDepth: 5 [pilon] Confirmed 178 of 300 bases (59.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10609_length_300_cov_26.692737:1-300 [pilon] Processing NODE_1746_length_1162_cov_5.542747:1-1162 [pilon] NODE_15050_length_240_cov_42.067227:1-240 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 104, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 240 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15050_length_240_cov_42.067227:1-240 [pilon] Processing NODE_6246_length_521_cov_20.297500:1-521 [pilon] NODE_2367_length_998_cov_17.794755:1-998 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 366, Coverage: 39, minDepth: 10 [pilon] Confirmed 857 of 998 bases (85.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2367_length_998_cov_17.794755:1-998 [pilon] Processing NODE_1153_length_1416_cov_11.500386:1-1416 [pilon] NODE_8665_length_384_cov_16.193916:1-384 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 91, Coverage: 9, minDepth: 5 [pilon] Confirmed 235 of 384 bases (61.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8665_length_384_cov_16.193916:1-384 [pilon] Processing NODE_1215_length_1384_cov_16.099762:1-1384 [pilon] NODE_2049_length_1072_cov_20.855941:1-1072 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 476, Coverage: 45, minDepth: 11 [pilon] Confirmed 903 of 1072 bases (84.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2049_length_1072_cov_20.855941:1-1072 [pilon] Processing NODE_13976_length_243_cov_14.278689:1-243 [pilon] NODE_12945_length_243_cov_23.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12945_length_243_cov_23.467213:1-243 [pilon] Processing NODE_2317_length_1007_cov_1.954853:1-1007 [pilon] NODE_7832_length_426_cov_0.921311:1-426 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 4, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 426 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7832_length_426_cov_0.921311:1-426 [pilon] Processing NODE_7224_length_459_cov_2.100592:1-459 [pilon] NODE_7676_length_434_cov_9.575080:1-434 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 90, Coverage: 13, minDepth: 5 [pilon] Confirmed 378 of 434 bases (87.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7676_length_434_cov_9.575080:1-434 [pilon] Processing NODE_14684_length_243_cov_8.713115:1-243 [pilon] NODE_1828_length_1135_cov_14.869822:1-1135 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 323, Coverage: 35, minDepth: 9 [pilon] Confirmed 964 of 1135 bases (84.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1828_length_1135_cov_14.869822:1-1135 [pilon] Processing NODE_13806_length_243_cov_15.581967:1-243 [pilon] NODE_10990_length_285_cov_8.945122:1-285 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 38, Coverage: 5, minDepth: 5 [pilon] Confirmed 134 of 285 bases (47.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10990_length_285_cov_8.945122:1-285 [pilon] Processing NODE_5326_length_590_cov_53.034115:1-590 [pilon] NODE_1755_length_1159_cov_2.101156:1-1159 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 63, Coverage: 7, minDepth: 5 [pilon] Confirmed 738 of 1159 bases (63.68%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1755_length_1159_cov_2.101156:1-1159 [pilon] Processing NODE_6723_length_489_cov_1.540761:1-489 [pilon] NODE_5603_length_570_cov_21.129176:1-570 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 232, Coverage: 22, minDepth: 6 [pilon] Confirmed 530 of 570 bases (92.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5603_length_570_cov_21.129176:1-570 [pilon] Processing NODE_5731_length_560_cov_51.266515:1-560 [pilon] NODE_14291_length_243_cov_11.918033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14291_length_243_cov_11.918033:1-243 [pilon] Processing NODE_4289_length_683_cov_1.379004:1-683 [pilon] NODE_691_length_1709_cov_24.529597:1-1709 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 954, Coverage: 57, minDepth: 14 [pilon] Confirmed 1314 of 1709 bases (76.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_691_length_1709_cov_24.529597:1-1709 [pilon] Processing NODE_4214_length_692_cov_12.856392:1-692 [pilon] NODE_10841_length_291_cov_9.435294:1-291 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 39, Coverage: 3, minDepth: 5 [pilon] Confirmed 76 of 291 bases (26.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10841_length_291_cov_9.435294:1-291 [pilon] Processing NODE_5943_length_545_cov_9.372642:1-545 [pilon] NODE_2460_length_975_cov_22.543326:1-975 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 527, Coverage: 52, minDepth: 13 [pilon] Confirmed 530 of 975 bases (54.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2460_length_975_cov_22.543326:1-975 [pilon] Processing NODE_855_length_1594_cov_8.447386:1-1594 [pilon] NODE_3516_length_781_cov_9.856061:1-781 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 179, Coverage: 19, minDepth: 5 [pilon] Confirmed 615 of 781 bases (78.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3516_length_781_cov_9.856061:1-781 [pilon] Processing NODE_12614_length_243_cov_27.426230:1-243 [pilon] NODE_6246_length_521_cov_20.297500:1-521 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 188, Coverage: 29, minDepth: 7 [pilon] Confirmed 441 of 521 bases (84.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6246_length_521_cov_20.297500:1-521 [pilon] Processing NODE_2954_length_881_cov_13.011842:1-881 [pilon] NODE_1215_length_1384_cov_16.099762:1-1384 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 524, Coverage: 34, minDepth: 9 [pilon] Confirmed 1328 of 1384 bases (95.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1215_length_1384_cov_16.099762:1-1384 [pilon] Processing NODE_8296_length_405_cov_5.602113:1-405 [pilon] NODE_7100_length_465_cov_12.584302:1-465 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 100, Coverage: 9, minDepth: 5 [pilon] Confirmed 252 of 465 bases (54.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7100_length_465_cov_12.584302:1-465 [pilon] Processing NODE_4547_length_657_cov_20.460821:1-657 [pilon] NODE_13024_length_243_cov_22.688525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13024_length_243_cov_22.688525:1-243 [pilon] Processing NODE_8131_length_411_cov_26.503448:1-411 [pilon] NODE_1746_length_1162_cov_5.542747:1-1162 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 205, Coverage: 15, minDepth: 5 [pilon] Confirmed 566 of 1162 bases (48.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1746_length_1162_cov_5.542747:1-1162 [pilon] Processing NODE_26_length_4704_cov_20.249618:1-4704 [pilon] NODE_8840_length_375_cov_14.716535:1-375 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 100, Coverage: 6, minDepth: 5 [pilon] Confirmed 191 of 375 bases (50.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8840_length_375_cov_14.716535:1-375 [pilon] Processing NODE_13934_length_243_cov_14.655738:1-243 [pilon] NODE_8696_length_382_cov_27.524904:1-382 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 157, Coverage: 24, minDepth: 6 [pilon] Confirmed 325 of 382 bases (85.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8696_length_382_cov_27.524904:1-382 [pilon] Processing NODE_13700_length_243_cov_16.418033:1-243 [pilon] NODE_13976_length_243_cov_14.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13976_length_243_cov_14.278689:1-243 [pilon] Processing NODE_12480_length_243_cov_29.450820:1-243 [pilon] NODE_2317_length_1007_cov_1.954853:1-1007 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 56, Coverage: 7, minDepth: 5 [pilon] Confirmed 691 of 1007 bases (68.62%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2317_length_1007_cov_1.954853:1-1007 [pilon] Processing NODE_7307_length_453_cov_28.620482:1-453 [pilon] NODE_1153_length_1416_cov_11.500386:1-1416 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 367, Coverage: 27, minDepth: 7 [pilon] Confirmed 1154 of 1416 bases (81.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1153_length_1416_cov_11.500386:1-1416 [pilon] Processing NODE_7921_length_422_cov_11.149502:1-422 [pilon] NODE_7224_length_459_cov_2.100592:1-459 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 15, Coverage: 4, minDepth: 5 [pilon] Confirmed 197 of 459 bases (42.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7224_length_459_cov_2.100592:1-459 [pilon] Processing NODE_14359_length_243_cov_11.377049:1-243 [pilon] NODE_14684_length_243_cov_8.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14684_length_243_cov_8.713115:1-243 [pilon] Processing NODE_11052_length_282_cov_6.894410:1-282 [pilon] NODE_5731_length_560_cov_51.266515:1-560 log: [pilon] frags shovill.bam: coverage 82 [pilon] Total Reads: 506, Coverage: 82, minDepth: 21 [pilon] Confirmed 442 of 560 bases (78.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5731_length_560_cov_51.266515:1-560 [pilon] Processing NODE_13009_length_243_cov_22.844262:1-243 [pilon] NODE_6723_length_489_cov_1.540761:1-489 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 213 of 489 bases (43.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6723_length_489_cov_1.540761:1-489 [pilon] Processing NODE_1864_length_1124_cov_29.927218:1-1124 [pilon] NODE_4289_length_683_cov_1.379004:1-683 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 29, Coverage: 6, minDepth: 5 [pilon] Confirmed 434 of 683 bases (63.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4289_length_683_cov_1.379004:1-683 [pilon] Processing NODE_3325_length_811_cov_5.747826:1-811 [pilon] NODE_5943_length_545_cov_9.372642:1-545 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 128, Coverage: 11, minDepth: 5 [pilon] Confirmed 293 of 545 bases (53.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5943_length_545_cov_9.372642:1-545 [pilon] Processing NODE_4408_length_671_cov_0.800000:1-671 [pilon] NODE_13806_length_243_cov_15.581967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13806_length_243_cov_15.581967:1-243 [pilon] Processing NODE_11681_length_258_cov_2.197080:1-258 [pilon] NODE_12614_length_243_cov_27.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12614_length_243_cov_27.426230:1-243 [pilon] Processing NODE_10096_length_321_cov_20.095000:1-321 [pilon] NODE_2954_length_881_cov_13.011842:1-881 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 258, Coverage: 27, minDepth: 7 [pilon] Confirmed 748 of 881 bases (84.90%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2954_length_881_cov_13.011842:1-881 [pilon] Processing NODE_1487_length_1267_cov_4.005236:1-1267 [pilon] NODE_5326_length_590_cov_53.034115:1-590 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 533, Coverage: 80, minDepth: 20 [pilon] Confirmed 531 of 590 bases (90.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5326_length_590_cov_53.034115:1-590 [pilon] Processing NODE_73_length_3271_cov_9.746667:1-3271 [pilon] NODE_4214_length_692_cov_12.856392:1-692 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 187, Coverage: 20, minDepth: 5 [pilon] Confirmed 498 of 692 bases (71.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4214_length_692_cov_12.856392:1-692 [pilon] Processing NODE_6628_length_495_cov_17.844920:1-495 [pilon] NODE_12480_length_243_cov_29.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12480_length_243_cov_29.450820:1-243 [pilon] Processing NODE_3356_length_804_cov_28.894583:1-804 [pilon] NODE_855_length_1594_cov_8.447386:1-1594 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 356, Coverage: 20, minDepth: 5 [pilon] Confirmed 1173 of 1594 bases (73.59%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_855_length_1594_cov_8.447386:1-1594 [pilon] Processing NODE_10131_length_321_cov_3.635000:1-321 [pilon] NODE_7307_length_453_cov_28.620482:1-453 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 226, Coverage: 32, minDepth: 8 [pilon] Confirmed 357 of 453 bases (78.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7307_length_453_cov_28.620482:1-453 [pilon] Processing NODE_1280_length_1350_cov_13.634662:1-1350 [pilon] NODE_8296_length_405_cov_5.602113:1-405 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 44, Coverage: 3, minDepth: 5 [pilon] Confirmed 123 of 405 bases (30.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8296_length_405_cov_5.602113:1-405 [pilon] Processing NODE_4813_length_633_cov_25.882812:1-633 [pilon] NODE_11052_length_282_cov_6.894410:1-282 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 282 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11052_length_282_cov_6.894410:1-282 [pilon] Processing NODE_6858_length_480_cov_15.353760:1-480 [pilon] NODE_3325_length_811_cov_5.747826:1-811 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 92, Coverage: 13, minDepth: 5 [pilon] Confirmed 624 of 811 bases (76.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3325_length_811_cov_5.747826:1-811 [pilon] Processing NODE_14074_length_243_cov_13.655738:1-243 [pilon] NODE_13009_length_243_cov_22.844262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13009_length_243_cov_22.844262:1-243 [pilon] Processing NODE_8642_length_386_cov_12.984906:1-386 [pilon] NODE_13700_length_243_cov_16.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_13934_length_243_cov_14.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13934_length_243_cov_14.655738:1-243 [pilon] Finished processing NODE_13700_length_243_cov_16.418033:1-243 [pilon] Processing NODE_7491_length_443_cov_73.055901:1-443 [pilon] Processing NODE_1484_length_1269_cov_7.831882:1-1269 [pilon] NODE_4547_length_657_cov_20.460821:1-657 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 286, Coverage: 49, minDepth: 12 [pilon] Confirmed 483 of 657 bases (73.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4547_length_657_cov_20.460821:1-657 [pilon] Processing NODE_7262_length_456_cov_22.510448:1-456 [pilon] NODE_8131_length_411_cov_26.503448:1-411 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 175, Coverage: 24, minDepth: 6 [pilon] Confirmed 296 of 411 bases (72.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8131_length_411_cov_26.503448:1-411 [pilon] Processing NODE_14179_length_243_cov_12.778689:1-243 [pilon] NODE_14359_length_243_cov_11.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14359_length_243_cov_11.377049:1-243 [pilon] Processing NODE_5296_length_593_cov_1.811441:1-593 [pilon] NODE_1864_length_1124_cov_29.927218:1-1124 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 739, Coverage: 67, minDepth: 17 [pilon] Confirmed 779 of 1124 bases (69.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1864_length_1124_cov_29.927218:1-1124 [pilon] Processing NODE_11325_length_270_cov_23.657718:1-270 [pilon] NODE_7921_length_422_cov_11.149502:1-422 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 104, Coverage: 10, minDepth: 5 [pilon] Confirmed 321 of 422 bases (76.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7921_length_422_cov_11.149502:1-422 [pilon] Processing NODE_3660_length_760_cov_10.205008:1-760 [pilon] NODE_4408_length_671_cov_0.800000:1-671 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 204 of 671 bases (30.40%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4408_length_671_cov_0.800000:1-671 [pilon] Processing NODE_2379_length_995_cov_0.948513:1-995 [pilon] NODE_26_length_4704_cov_20.249618:1-4704 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 2229, Coverage: 53, minDepth: 13 [pilon] Confirmed 3475 of 4704 bases (73.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_26_length_4704_cov_20.249618:1-4704 [pilon] Processing NODE_5421_length_582_cov_30.429501:1-582 [pilon] NODE_10096_length_321_cov_20.095000:1-321 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 89, Coverage: 2, minDepth: 5 [pilon] Confirmed 104 of 321 bases (32.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10096_length_321_cov_20.095000:1-321 [pilon] Processing NODE_7738_length_430_cov_29.165049:1-430 [pilon] NODE_1487_length_1267_cov_4.005236:1-1267 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 106, Coverage: 11, minDepth: 5 [pilon] Confirmed 1060 of 1267 bases (83.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1487_length_1267_cov_4.005236:1-1267 [pilon] Processing NODE_7916_length_422_cov_20.415282:1-422 [pilon] NODE_6628_length_495_cov_17.844920:1-495 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 143, Coverage: 14, minDepth: 5 [pilon] Confirmed 329 of 495 bases (66.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6628_length_495_cov_17.844920:1-495 [pilon] Processing NODE_14725_length_243_cov_8.377049:1-243 [pilon] NODE_3356_length_804_cov_28.894583:1-804 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 448, Coverage: 37, minDepth: 9 [pilon] Confirmed 639 of 804 bases (79.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3356_length_804_cov_28.894583:1-804 [pilon] Processing NODE_8833_length_375_cov_18.551181:1-375 [pilon] NODE_11681_length_258_cov_2.197080:1-258 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 258 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11681_length_258_cov_2.197080:1-258 [pilon] Processing NODE_12431_length_243_cov_30.311475:1-243 [pilon] NODE_1280_length_1350_cov_13.634662:1-1350 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 502, Coverage: 40, minDepth: 10 [pilon] Confirmed 1155 of 1350 bases (85.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1280_length_1350_cov_13.634662:1-1350 [pilon] Processing NODE_3501_length_783_cov_18.009063:1-783 [pilon] NODE_6858_length_480_cov_15.353760:1-480 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 117, Coverage: 20, minDepth: 5 [pilon] Confirmed 344 of 480 bases (71.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6858_length_480_cov_15.353760:1-480 [pilon] Processing NODE_14680_length_243_cov_8.737705:1-243 [pilon] NODE_8642_length_386_cov_12.984906:1-386 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 76, Coverage: 13, minDepth: 5 [pilon] Confirmed 298 of 386 bases (77.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8642_length_386_cov_12.984906:1-386 [pilon] Processing NODE_1890_length_1116_cov_17.222111:1-1116 [pilon] NODE_10131_length_321_cov_3.635000:1-321 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 27, Coverage: 4, minDepth: 5 [pilon] Confirmed 129 of 321 bases (40.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10131_length_321_cov_3.635000:1-321 [pilon] Processing NODE_9444_length_348_cov_18.374449:1-348 [pilon] NODE_14074_length_243_cov_13.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14074_length_243_cov_13.655738:1-243 [pilon] Processing NODE_7577_length_439_cov_2.707547:1-439 [pilon] NODE_73_length_3271_cov_9.746667:1-3271 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 755, Coverage: 29, minDepth: 7 [pilon] Confirmed 2639 of 3271 bases (80.68%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_73_length_3271_cov_9.746667:1-3271 [pilon] Processing NODE_11876_length_250_cov_5.511628:1-250 [pilon] NODE_11325_length_270_cov_23.657718:1-270 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 62, Coverage: 7, minDepth: 5 [pilon] Confirmed 209 of 270 bases (77.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11325_length_270_cov_23.657718:1-270 [pilon] Processing NODE_2779_length_913_cov_1.325758:1-913 [pilon] NODE_5421_length_582_cov_30.429501:1-582 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 346, Coverage: 45, minDepth: 11 [pilon] Confirmed 417 of 582 bases (71.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5421_length_582_cov_30.429501:1-582 [pilon] Processing NODE_7298_length_454_cov_13.072072:1-454 [pilon] NODE_4813_length_633_cov_25.882812:1-633 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 339, Coverage: 30, minDepth: 8 [pilon] Confirmed 425 of 633 bases (67.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4813_length_633_cov_25.882812:1-633 [pilon] Processing NODE_401_length_2046_cov_19.798961:1-2046 [pilon] NODE_2379_length_995_cov_0.948513:1-995 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 28, Coverage: 4, minDepth: 5 [pilon] Confirmed 273 of 995 bases (27.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2379_length_995_cov_0.948513:1-995 [pilon] Processing NODE_5623_length_569_cov_1.732143:1-569 [pilon] NODE_3660_length_760_cov_10.205008:1-760 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 172, Coverage: 19, minDepth: 5 [pilon] Confirmed 523 of 760 bases (68.82%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3660_length_760_cov_10.205008:1-760 [pilon] Processing NODE_3994_length_715_cov_41.360269:1-715 [pilon] NODE_7738_length_430_cov_29.165049:1-430 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 198, Coverage: 31, minDepth: 8 [pilon] Confirmed 336 of 430 bases (78.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7738_length_430_cov_29.165049:1-430 [pilon] Processing NODE_8549_length_391_cov_21.988889:1-391 [pilon] NODE_7916_length_422_cov_20.415282:1-422 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 149, Coverage: 9, minDepth: 5 [pilon] Confirmed 225 of 422 bases (53.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7916_length_422_cov_20.415282:1-422 [pilon] Processing NODE_12244_length_243_cov_34.893443:1-243 [pilon] NODE_7262_length_456_cov_22.510448:1-456 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 161, Coverage: 30, minDepth: 8 [pilon] Confirmed 356 of 456 bases (78.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7262_length_456_cov_22.510448:1-456 [pilon] Processing NODE_1_length_9825_cov_16.330688:1-9825 [pilon] NODE_1484_length_1269_cov_7.831882:1-1269 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 199, Coverage: 20, minDepth: 5 [pilon] Confirmed 956 of 1269 bases (75.33%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1484_length_1269_cov_7.831882:1-1269 [pilon] Processing NODE_2013_length_1083_cov_24.715177:1-1083 [pilon] NODE_7491_length_443_cov_73.055901:1-443 log: [pilon] frags shovill.bam: coverage 89 [pilon] Total Reads: 528, Coverage: 89, minDepth: 22 [pilon] Confirmed 392 of 443 bases (88.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7491_length_443_cov_73.055901:1-443 [pilon] Processing NODE_15015_length_243_cov_5.254098:1-243 [pilon] NODE_8833_length_375_cov_18.551181:1-375 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 122, Coverage: 12, minDepth: 5 [pilon] Confirmed 225 of 375 bases (60.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8833_length_375_cov_18.551181:1-375 [pilon] Processing NODE_10082_length_321_cov_36.605000:1-321 [pilon] NODE_5296_length_593_cov_1.811441:1-593 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 342 of 593 bases (57.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5296_length_593_cov_1.811441:1-593 [pilon] Processing NODE_15248_length_128_cov_28.428571:1-128 [pilon] NODE_14179_length_243_cov_12.778689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14179_length_243_cov_12.778689:1-243 [pilon] Processing NODE_1242_length_1369_cov_22.947917:1-1369 [pilon] NODE_3501_length_783_cov_18.009063:1-783 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 280, Coverage: 35, minDepth: 9 [pilon] Confirmed 632 of 783 bases (80.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3501_length_783_cov_18.009063:1-783 [pilon] Processing NODE_11810_length_252_cov_21.572519:1-252 [pilon] NODE_14725_length_243_cov_8.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14725_length_243_cov_8.377049:1-243 [pilon] Processing NODE_8445_length_397_cov_12.721014:1-397 [pilon] NODE_14680_length_243_cov_8.737705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14680_length_243_cov_8.737705:1-243 [pilon] Processing NODE_950_length_1527_cov_31.970128:1-1527 [pilon] NODE_7577_length_439_cov_2.707547:1-439 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 217 of 439 bases (49.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7577_length_439_cov_2.707547:1-439 [pilon] Processing NODE_3327_length_811_cov_1.566667:1-811 [pilon] NODE_2779_length_913_cov_1.325758:1-913 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 43, Coverage: 6, minDepth: 5 [pilon] Confirmed 499 of 913 bases (54.65%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2779_length_913_cov_1.325758:1-913 [pilon] Processing NODE_3040_length_866_cov_17.099329:1-866 [pilon] NODE_12431_length_243_cov_30.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12431_length_243_cov_30.311475:1-243 [pilon] Processing NODE_4876_length_629_cov_1.419291:1-629 [pilon] NODE_1890_length_1116_cov_17.222111:1-1116 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 372, Coverage: 34, minDepth: 9 [pilon] Confirmed 886 of 1116 bases (79.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1890_length_1116_cov_17.222111:1-1116 [pilon] Processing NODE_13290_length_243_cov_20.295082:1-243 [pilon] NODE_7298_length_454_cov_13.072072:1-454 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 95, Coverage: 14, minDepth: 5 [pilon] Confirmed 346 of 454 bases (76.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7298_length_454_cov_13.072072:1-454 [pilon] Processing NODE_13511_length_243_cov_18.303279:1-243 [pilon] NODE_3994_length_715_cov_41.360269:1-715 log: [pilon] frags shovill.bam: coverage 89 [pilon] Total Reads: 557, Coverage: 89, minDepth: 22 [pilon] Confirmed 555 of 715 bases (77.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3994_length_715_cov_41.360269:1-715 [pilon] Processing NODE_8748_length_380_cov_22.698842:1-380 [pilon] NODE_5623_length_569_cov_1.732143:1-569 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 36, Coverage: 6, minDepth: 5 [pilon] Confirmed 289 of 569 bases (50.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5623_length_569_cov_1.732143:1-569 [pilon] Processing NODE_13288_length_243_cov_20.303279:1-243 [pilon] NODE_8549_length_391_cov_21.988889:1-391 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 141, Coverage: 23, minDepth: 6 [pilon] Confirmed 356 of 391 bases (91.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8549_length_391_cov_21.988889:1-391 [pilon] Processing NODE_12280_length_243_cov_33.655738:1-243 [pilon] NODE_12244_length_243_cov_34.893443:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 106, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12244_length_243_cov_34.893443:1-243 [pilon] Processing NODE_7943_length_420_cov_22.642140:1-420 [pilon] NODE_9444_length_348_cov_18.374449:1-348 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 107, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 348 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9444_length_348_cov_18.374449:1-348 [pilon] Processing NODE_5917_length_546_cov_22.400000:1-546 [pilon] NODE_10082_length_321_cov_36.605000:1-321 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 176, Coverage: 25, minDepth: 6 [pilon] Confirmed 300 of 321 bases (93.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10082_length_321_cov_36.605000:1-321 [pilon] Processing NODE_12931_length_243_cov_23.639344:1-243 [pilon] NODE_11876_length_250_cov_5.511628:1-250 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 250 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11876_length_250_cov_5.511628:1-250 [pilon] Processing NODE_8728_length_381_cov_12.780769:1-381 [pilon] NODE_11810_length_252_cov_21.572519:1-252 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 63, Coverage: 6, minDepth: 5 [pilon] Confirmed 173 of 252 bases (68.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11810_length_252_cov_21.572519:1-252 [pilon] Processing NODE_8267_length_405_cov_31.292254:1-405 [pilon] NODE_401_length_2046_cov_19.798961:1-2046 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 927, Coverage: 42, minDepth: 11 [pilon] Confirmed 1825 of 2046 bases (89.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_401_length_2046_cov_19.798961:1-2046 [pilon] Processing NODE_8580_length_389_cov_37.738806:1-389 [pilon] NODE_15015_length_243_cov_5.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15015_length_243_cov_5.254098:1-243 [pilon] Processing NODE_12019_length_246_cov_12.912000:1-246 [pilon] NODE_15248_length_128_cov_28.428571:1-128 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 128 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15248_length_128_cov_28.428571:1-128 [pilon] Processing NODE_7227_length_459_cov_1.230769:1-459 [pilon] NODE_3327_length_811_cov_1.566667:1-811 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 27, Coverage: 4, minDepth: 5 [pilon] Confirmed 242 of 811 bases (29.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3327_length_811_cov_1.566667:1-811 [pilon] Processing NODE_9309_length_354_cov_12.111588:1-354 [pilon] NODE_2013_length_1083_cov_24.715177:1-1083 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 683, Coverage: 54, minDepth: 14 [pilon] Confirmed 682 of 1083 bases (62.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2013_length_1083_cov_24.715177:1-1083 [pilon] Processing NODE_5137_length_607_cov_1.781893:1-607 [pilon] NODE_3040_length_866_cov_17.099329:1-866 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 307, Coverage: 35, minDepth: 9 [pilon] Confirmed 720 of 866 bases (83.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3040_length_866_cov_17.099329:1-866 [pilon] Processing NODE_2143_length_1048_cov_1.078749:1-1048 [pilon] NODE_13290_length_243_cov_20.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13290_length_243_cov_20.295082:1-243 [pilon] Processing NODE_8738_length_380_cov_66.305019:1-380 [pilon] NODE_950_length_1527_cov_31.970128:1-1527 log: [pilon] frags shovill.bam: coverage 82 [pilon] Total Reads: 1051, Coverage: 82, minDepth: 21 [pilon] Confirmed 1202 of 1527 bases (78.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_950_length_1527_cov_31.970128:1-1527 [pilon] Processing NODE_13157_length_243_cov_21.467213:1-243 [pilon] NODE_1242_length_1369_cov_22.947917:1-1369 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 657, Coverage: 35, minDepth: 9 [pilon] Confirmed 1201 of 1369 bases (87.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1242_length_1369_cov_22.947917:1-1369 [pilon] Processing NODE_11917_length_249_cov_12.914062:1-249 [pilon] NODE_13511_length_243_cov_18.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13511_length_243_cov_18.303279:1-243 [pilon] NODE_12280_length_243_cov_33.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 86, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_4780_length_637_cov_1.205426:1-637 [pilon] Finished processing NODE_12280_length_243_cov_33.655738:1-243 [pilon] Processing NODE_360_length_2108_cov_20.659789:1-2108 [pilon] NODE_8748_length_380_cov_22.698842:1-380 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 179, Coverage: 33, minDepth: 8 [pilon] Confirmed 323 of 380 bases (85.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8748_length_380_cov_22.698842:1-380 [pilon] Processing NODE_12392_length_243_cov_31.221311:1-243 [pilon] NODE_8445_length_397_cov_12.721014:1-397 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 89, Coverage: 7, minDepth: 5 [pilon] Confirmed 227 of 397 bases (57.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8445_length_397_cov_12.721014:1-397 [pilon] Processing NODE_3536_length_779_cov_10.089666:1-779 [pilon] NODE_13288_length_243_cov_20.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13288_length_243_cov_20.303279:1-243 [pilon] Processing NODE_12589_length_243_cov_27.672131:1-243 [pilon] NODE_4876_length_629_cov_1.419291:1-629 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 27, Coverage: 6, minDepth: 5 [pilon] Confirmed 373 of 629 bases (59.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4876_length_629_cov_1.419291:1-629 [pilon] Processing NODE_12697_length_243_cov_26.278689:1-243 [pilon] NODE_7943_length_420_cov_22.642140:1-420 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 137, Coverage: 22, minDepth: 6 [pilon] Confirmed 293 of 420 bases (69.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7943_length_420_cov_22.642140:1-420 [pilon] Processing NODE_2535_length_960_cov_1.356377:1-960 [pilon] NODE_12931_length_243_cov_23.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12931_length_243_cov_23.639344:1-243 [pilon] Processing NODE_2906_length_891_cov_24.193506:1-891 [pilon] NODE_8267_length_405_cov_31.292254:1-405 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 200, Coverage: 8, minDepth: 5 [pilon] Confirmed 163 of 405 bases (40.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8267_length_405_cov_31.292254:1-405 [pilon] Processing NODE_11849_length_252_cov_8.045802:1-252 [pilon] NODE_1_length_9825_cov_16.330688:1-9825 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 3631, Coverage: 48, minDepth: 12 [pilon] Confirmed 8792 of 9825 bases (89.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1_length_9825_cov_16.330688:1-9825 [pilon] Processing NODE_6772_length_485_cov_2.527473:1-485 [pilon] NODE_5917_length_546_cov_22.400000:1-546 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 227, Coverage: 29, minDepth: 7 [pilon] Confirmed 477 of 546 bases (87.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5917_length_546_cov_22.400000:1-546 [pilon] Processing NODE_13866_length_243_cov_15.155738:1-243 [pilon] NODE_9309_length_354_cov_12.111588:1-354 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 59, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 354 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9309_length_354_cov_12.111588:1-354 [pilon] Processing NODE_7892_length_423_cov_17.258278:1-423 [pilon] NODE_8728_length_381_cov_12.780769:1-381 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 81, Coverage: 7, minDepth: 5 [pilon] Confirmed 216 of 381 bases (56.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8728_length_381_cov_12.780769:1-381 [pilon] Processing NODE_6293_length_518_cov_28.100756:1-518 [pilon] NODE_2143_length_1048_cov_1.078749:1-1048 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 48, Coverage: 5, minDepth: 5 [pilon] Confirmed 500 of 1048 bases (47.71%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2143_length_1048_cov_1.078749:1-1048 [pilon] Processing NODE_209_length_2473_cov_2.183673:1-2473 [pilon] NODE_8738_length_380_cov_66.305019:1-380 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 406, Coverage: 63, minDepth: 16 [pilon] Confirmed 330 of 380 bases (86.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8738_length_380_cov_66.305019:1-380 [pilon] Processing NODE_12743_length_243_cov_25.655738:1-243 [pilon] NODE_13157_length_243_cov_21.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13157_length_243_cov_21.467213:1-243 [pilon] Processing NODE_2871_length_899_cov_1.295630:1-899 [pilon] NODE_4780_length_637_cov_1.205426:1-637 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 119 of 637 bases (18.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4780_length_637_cov_1.205426:1-637 [pilon] Processing NODE_4860_length_630_cov_0.980354:1-630 [pilon] NODE_12019_length_246_cov_12.912000:1-246 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 35, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12019_length_246_cov_12.912000:1-246 [pilon] Processing NODE_13393_length_243_cov_19.352459:1-243 [pilon] NODE_7227_length_459_cov_1.230769:1-459 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 459 bases (28.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7227_length_459_cov_1.230769:1-459 [pilon] Processing NODE_11105_length_279_cov_22.120253:1-279 [pilon] NODE_12392_length_243_cov_31.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12392_length_243_cov_31.221311:1-243 [pilon] Processing NODE_6398_length_510_cov_19.267352:1-510 [pilon] NODE_360_length_2108_cov_20.659789:1-2108 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 1131, Coverage: 65, minDepth: 16 [pilon] Confirmed 1886 of 2108 bases (89.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_360_length_2108_cov_20.659789:1-2108 [pilon] Processing NODE_14504_length_243_cov_10.270492:1-243 [pilon] NODE_8580_length_389_cov_37.738806:1-389 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 279, Coverage: 41, minDepth: 10 [pilon] Confirmed 338 of 389 bases (86.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8580_length_389_cov_37.738806:1-389 [pilon] Processing NODE_12279_length_243_cov_33.663934:1-243 [pilon] NODE_5137_length_607_cov_1.781893:1-607 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 32, Coverage: 7, minDepth: 5 [pilon] Confirmed 380 of 607 bases (62.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5137_length_607_cov_1.781893:1-607 [pilon] Processing NODE_6497_length_504_cov_8.436031:1-504 [pilon] NODE_12589_length_243_cov_27.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12589_length_243_cov_27.672131:1-243 [pilon] Processing NODE_12877_length_243_cov_24.245902:1-243 [pilon] NODE_2535_length_960_cov_1.356377:1-960 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 32, Coverage: 4, minDepth: 5 [pilon] Confirmed 266 of 960 bases (27.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2535_length_960_cov_1.356377:1-960 [pilon] Processing NODE_11853_length_252_cov_6.465649:1-252 [pilon] NODE_11849_length_252_cov_8.045802:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11849_length_252_cov_8.045802:1-252 [pilon] Processing NODE_6305_length_518_cov_0.375315:1-518 [pilon] NODE_2906_length_891_cov_24.193506:1-891 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 473, Coverage: 46, minDepth: 12 [pilon] Confirmed 611 of 891 bases (68.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2906_length_891_cov_24.193506:1-891 [pilon] Processing NODE_6882_length_479_cov_2.684358:1-479 [pilon] NODE_11917_length_249_cov_12.914062:1-249 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11917_length_249_cov_12.914062:1-249 [pilon] Processing NODE_10890_length_288_cov_24.287425:1-288 [pilon] NODE_3536_length_779_cov_10.089666:1-779 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 161, Coverage: 21, minDepth: 5 [pilon] Confirmed 528 of 779 bases (67.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3536_length_779_cov_10.089666:1-779 [pilon] Processing NODE_9154_length_359_cov_63.428571:1-359 [pilon] NODE_12697_length_243_cov_26.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 34, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12697_length_243_cov_26.278689:1-243 [pilon] Processing NODE_8336_length_403_cov_1.251773:1-403 [pilon] NODE_7892_length_423_cov_17.258278:1-423 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 104, Coverage: 13, minDepth: 5 [pilon] Confirmed 290 of 423 bases (68.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7892_length_423_cov_17.258278:1-423 [pilon] Processing NODE_6631_length_495_cov_15.946524:1-495 [pilon] NODE_12743_length_243_cov_25.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 47, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12743_length_243_cov_25.655738:1-243 [pilon] Processing NODE_14659_length_243_cov_8.959016:1-243 [pilon] NODE_2871_length_899_cov_1.295630:1-899 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 34, Coverage: 5, minDepth: 5 [pilon] Confirmed 543 of 899 bases (60.40%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2871_length_899_cov_1.295630:1-899 [pilon] Processing NODE_6557_length_500_cov_3.153034:1-500 [pilon] NODE_6772_length_485_cov_2.527473:1-485 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 274 of 485 bases (56.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6772_length_485_cov_2.527473:1-485 [pilon] Processing NODE_9694_length_339_cov_5.821101:1-339 [pilon] NODE_209_length_2473_cov_2.183673:1-2473 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 170, Coverage: 9, minDepth: 5 [pilon] Confirmed 1964 of 2473 bases (79.42%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_209_length_2473_cov_2.183673:1-2473 [pilon] Processing NODE_13168_length_243_cov_21.368852:1-243 [pilon] NODE_4860_length_630_cov_0.980354:1-630 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 176 of 630 bases (27.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4860_length_630_cov_0.980354:1-630 [pilon] Processing NODE_7480_length_444_cov_15.448916:1-444 [pilon] NODE_6398_length_510_cov_19.267352:1-510 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 182, Coverage: 31, minDepth: 8 [pilon] Confirmed 425 of 510 bases (83.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6398_length_510_cov_19.267352:1-510 [pilon] Processing NODE_12407_length_243_cov_30.803279:1-243 [pilon] NODE_14504_length_243_cov_10.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14504_length_243_cov_10.270492:1-243 [pilon] Processing NODE_194_length_2532_cov_3.437578:1-2532 [pilon] NODE_13866_length_243_cov_15.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13866_length_243_cov_15.155738:1-243 [pilon] Processing NODE_7366_length_450_cov_13.683891:1-450 [pilon] NODE_11853_length_252_cov_6.465649:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11853_length_252_cov_6.465649:1-252 [pilon] Processing NODE_5379_length_586_cov_1.554839:1-586 [pilon] NODE_12877_length_243_cov_24.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12877_length_243_cov_24.245902:1-243 [pilon] Processing NODE_5438_length_581_cov_22.704348:1-581 [pilon] NODE_6305_length_518_cov_0.375315:1-518 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 518 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_6882_length_479_cov_2.684358:1-479 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 25, Coverage: 5, minDepth: 5 [pilon] Confirmed 217 of 479 bases (45.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6882_length_479_cov_2.684358:1-479 [pilon] Finished processing NODE_6305_length_518_cov_0.375315:1-518 [pilon] Processing NODE_10536_length_303_cov_20.719780:1-303 [pilon] Processing NODE_2744_length_919_cov_29.209273:1-919 [pilon] NODE_6293_length_518_cov_28.100756:1-518 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 298, Coverage: 20, minDepth: 5 [pilon] Confirmed 319 of 518 bases (61.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6293_length_518_cov_28.100756:1-518 [pilon] Processing NODE_12648_length_243_cov_26.885246:1-243 [pilon] NODE_13393_length_243_cov_19.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13393_length_243_cov_19.352459:1-243 [pilon] Processing NODE_3079_length_858_cov_1.675712:1-858 [pilon] NODE_11105_length_279_cov_22.120253:1-279 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 81, Coverage: 7, minDepth: 5 [pilon] Confirmed 192 of 279 bases (68.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11105_length_279_cov_22.120253:1-279 [pilon] Processing NODE_1616_length_1212_cov_1.915674:1-1212 [pilon] NODE_6497_length_504_cov_8.436031:1-504 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 76, Coverage: 4, minDepth: 5 [pilon] Confirmed 137 of 504 bases (27.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6497_length_504_cov_8.436031:1-504 [pilon] Processing NODE_15126_length_206_cov_5.317647:1-206 [pilon] NODE_12279_length_243_cov_33.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12279_length_243_cov_33.663934:1-243 [pilon] Processing NODE_4367_length_674_cov_15.566004:1-674 [pilon] NODE_6631_length_495_cov_15.946524:1-495 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 119, Coverage: 13, minDepth: 5 [pilon] Confirmed 379 of 495 bases (76.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6631_length_495_cov_15.946524:1-495 [pilon] Processing NODE_1518_length_1251_cov_30.153097:1-1251 [pilon] NODE_14659_length_243_cov_8.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14659_length_243_cov_8.959016:1-243 [pilon] Processing NODE_2637_length_940_cov_16.791209:1-940 [pilon] NODE_13168_length_243_cov_21.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13168_length_243_cov_21.368852:1-243 [pilon] Processing NODE_6491_length_504_cov_12.443864:1-504 [pilon] NODE_6557_length_500_cov_3.153034:1-500 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 34, Coverage: 9, minDepth: 5 [pilon] Confirmed 369 of 500 bases (73.80%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6557_length_500_cov_3.153034:1-500 [pilon] Processing NODE_12403_length_243_cov_30.827869:1-243 [pilon] NODE_8336_length_403_cov_1.251773:1-403 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 224 of 403 bases (55.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8336_length_403_cov_1.251773:1-403 [pilon] NODE_7480_length_444_cov_15.448916:1-444 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 118, Coverage: 21, minDepth: 5 [pilon] Confirmed 346 of 444 bases (77.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7480_length_444_cov_15.448916:1-444 [pilon] Processing NODE_2899_length_893_cov_1.032383:1-893 [pilon] Processing NODE_14920_length_243_cov_6.500000:1-243 [pilon] NODE_12407_length_243_cov_30.803279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 90, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12407_length_243_cov_30.803279:1-243 [pilon] Processing NODE_7193_length_460_cov_12.525074:1-460 [pilon] NODE_10890_length_288_cov_24.287425:1-288 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 79, Coverage: 9, minDepth: 5 [pilon] Confirmed 209 of 288 bases (72.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10890_length_288_cov_24.287425:1-288 [pilon] Processing NODE_11212_length_276_cov_6.658065:1-276 [pilon] NODE_9154_length_359_cov_63.428571:1-359 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 345, Coverage: 55, minDepth: 14 [pilon] Confirmed 317 of 359 bases (88.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9154_length_359_cov_63.428571:1-359 [pilon] Processing NODE_1520_length_1251_cov_20.435398:1-1251 [pilon] NODE_5379_length_586_cov_1.554839:1-586 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 27, Coverage: 5, minDepth: 5 [pilon] Confirmed 334 of 586 bases (57.00%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5379_length_586_cov_1.554839:1-586 [pilon] Processing NODE_3022_length_869_cov_10.552139:1-869 [pilon] NODE_194_length_2532_cov_3.437578:1-2532 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 216, Coverage: 11, minDepth: 5 [pilon] Confirmed 2083 of 2532 bases (82.27%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_194_length_2532_cov_3.437578:1-2532 [pilon] Processing NODE_12166_length_243_cov_38.336066:1-243 [pilon] NODE_9694_length_339_cov_5.821101:1-339 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 29, Coverage: 3, minDepth: 5 [pilon] Confirmed 115 of 339 bases (33.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9694_length_339_cov_5.821101:1-339 [pilon] Processing NODE_9497_length_345_cov_32.424107:1-345 [pilon] NODE_5438_length_581_cov_22.704348:1-581 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 243, Coverage: 36, minDepth: 9 [pilon] Confirmed 400 of 581 bases (68.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5438_length_581_cov_22.704348:1-581 [pilon] Processing NODE_2792_length_910_cov_31.510773:1-910 [pilon] NODE_2744_length_919_cov_29.209273:1-919 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 604, Coverage: 42, minDepth: 11 [pilon] Confirmed 630 of 919 bases (68.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2744_length_919_cov_29.209273:1-919 [pilon] Processing NODE_13388_length_243_cov_19.467213:1-243 [pilon] NODE_10536_length_303_cov_20.719780:1-303 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 66, Coverage: 6, minDepth: 5 [pilon] Confirmed 168 of 303 bases (55.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10536_length_303_cov_20.719780:1-303 [pilon] Processing NODE_8574_length_390_cov_10.011152:1-390 [pilon] NODE_7366_length_450_cov_13.683891:1-450 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 108, Coverage: 16, minDepth: 5 [pilon] Confirmed 279 of 450 bases (62.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7366_length_450_cov_13.683891:1-450 [pilon] Processing NODE_14250_length_243_cov_12.254098:1-243 [pilon] NODE_1518_length_1251_cov_30.153097:1-1251 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 859, Coverage: 48, minDepth: 12 [pilon] Confirmed 1136 of 1251 bases (90.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1518_length_1251_cov_30.153097:1-1251 [pilon] Processing NODE_6666_length_492_cov_28.431267:1-492 [pilon] NODE_12648_length_243_cov_26.885246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12648_length_243_cov_26.885246:1-243 [pilon] Processing NODE_13194_length_243_cov_21.139344:1-243 [pilon] NODE_2637_length_940_cov_16.791209:1-940 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 315, Coverage: 32, minDepth: 8 [pilon] Confirmed 794 of 940 bases (84.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2637_length_940_cov_16.791209:1-940 [pilon] Processing NODE_3119_length_848_cov_12.590096:1-848 [pilon] NODE_3079_length_858_cov_1.675712:1-858 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 33, Coverage: 5, minDepth: 5 [pilon] Confirmed 520 of 858 bases (60.61%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3079_length_858_cov_1.675712:1-858 [pilon] Processing NODE_10794_length_294_cov_7.069364:1-294 [pilon] NODE_12403_length_243_cov_30.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12403_length_243_cov_30.827869:1-243 [pilon] Processing NODE_2512_length_964_cov_35.365362:1-964 [pilon] NODE_6491_length_504_cov_12.443864:1-504 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 123, Coverage: 24, minDepth: 6 [pilon] Confirmed 398 of 504 bases (78.97%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6491_length_504_cov_12.443864:1-504 [pilon] Processing NODE_12907_length_243_cov_24.032787:1-243 [pilon] NODE_1616_length_1212_cov_1.915674:1-1212 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 948 of 1212 bases (78.22%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1616_length_1212_cov_1.915674:1-1212 [pilon] NODE_15126_length_206_cov_5.317647:1-206 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 2, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 206 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_12336_length_243_cov_32.483607:1-243 [pilon] Finished processing NODE_15126_length_206_cov_5.317647:1-206 [pilon] Processing NODE_6484_length_504_cov_25.953003:1-504 [pilon] NODE_14920_length_243_cov_6.500000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14920_length_243_cov_6.500000:1-243 [pilon] Processing NODE_11029_length_282_cov_18.720497:1-282 [pilon] NODE_7193_length_460_cov_12.525074:1-460 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 74, Coverage: 10, minDepth: 5 [pilon] Confirmed 269 of 460 bases (58.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7193_length_460_cov_12.525074:1-460 [pilon] Processing NODE_6208_length_524_cov_0.913151:1-524 [pilon] NODE_4367_length_674_cov_15.566004:1-674 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 237, Coverage: 23, minDepth: 6 [pilon] Confirmed 424 of 674 bases (62.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4367_length_674_cov_15.566004:1-674 [pilon] Processing NODE_2016_length_1082_cov_28.983351:1-1082 [pilon] NODE_3022_length_869_cov_10.552139:1-869 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 198, Coverage: 18, minDepth: 5 [pilon] Confirmed 724 of 869 bases (83.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3022_length_869_cov_10.552139:1-869 [pilon] Processing NODE_9463_length_348_cov_7.599119:1-348 [pilon] NODE_13388_length_243_cov_19.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13388_length_243_cov_19.467213:1-243 [pilon] Processing NODE_12375_length_243_cov_31.508197:1-243 [pilon] NODE_8574_length_390_cov_10.011152:1-390 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 72, Coverage: 5, minDepth: 5 [pilon] Confirmed 183 of 390 bases (46.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8574_length_390_cov_10.011152:1-390 [pilon] Processing NODE_3682_length_757_cov_19.454403:1-757 [pilon] NODE_2792_length_910_cov_31.510773:1-910 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 580, Coverage: 67, minDepth: 17 [pilon] Confirmed 700 of 910 bases (76.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2792_length_910_cov_31.510773:1-910 [pilon] Processing NODE_12723_length_243_cov_25.926230:1-243 [pilon] NODE_12166_length_243_cov_38.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 82, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12166_length_243_cov_38.336066:1-243 [pilon] Processing NODE_1362_length_1313_cov_3.380872:1-1313 [pilon] NODE_2899_length_893_cov_1.032383:1-893 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 30, Coverage: 4, minDepth: 5 [pilon] Confirmed 344 of 893 bases (38.52%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2899_length_893_cov_1.032383:1-893 [pilon] Processing NODE_12991_length_243_cov_23.024590:1-243 [pilon] NODE_6666_length_492_cov_28.431267:1-492 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 245, Coverage: 44, minDepth: 11 [pilon] Confirmed 371 of 492 bases (75.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6666_length_492_cov_28.431267:1-492 [pilon] Processing NODE_10522_length_303_cov_30.516484:1-303 [pilon] NODE_1520_length_1251_cov_20.435398:1-1251 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 554, Coverage: 48, minDepth: 12 [pilon] Confirmed 919 of 1251 bases (73.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1520_length_1251_cov_20.435398:1-1251 [pilon] Processing NODE_11670_length_258_cov_9.240876:1-258 [pilon] NODE_9497_length_345_cov_32.424107:1-345 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 104, Coverage: 6, minDepth: 5 [pilon] Confirmed 149 of 345 bases (43.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9497_length_345_cov_32.424107:1-345 [pilon] Processing NODE_3676_length_758_cov_21.095761:1-758 [pilon] NODE_11212_length_276_cov_6.658065:1-276 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11212_length_276_cov_6.658065:1-276 [pilon] Processing NODE_6136_length_529_cov_15.443627:1-529 [pilon] NODE_3119_length_848_cov_12.590096:1-848 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 190, Coverage: 23, minDepth: 6 [pilon] Confirmed 593 of 848 bases (69.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3119_length_848_cov_12.590096:1-848 [pilon] Processing NODE_14967_length_243_cov_5.909836:1-243 [pilon] NODE_14250_length_243_cov_12.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14250_length_243_cov_12.254098:1-243 [pilon] Processing NODE_14628_length_243_cov_9.221311:1-243 [pilon] NODE_11029_length_282_cov_18.720497:1-282 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 60, Coverage: 4, minDepth: 5 [pilon] Confirmed 126 of 282 bases (44.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11029_length_282_cov_18.720497:1-282 [pilon] Processing NODE_3634_length_763_cov_28.928349:1-763 [pilon] NODE_2512_length_964_cov_35.365362:1-964 log: [pilon] frags shovill.bam: coverage 79 [pilon] Total Reads: 716, Coverage: 79, minDepth: 20 [pilon] Confirmed 690 of 964 bases (71.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2512_length_964_cov_35.365362:1-964 [pilon] Processing NODE_2229_length_1026_cov_1.809945:1-1026 [pilon] NODE_13194_length_243_cov_21.139344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13194_length_243_cov_21.139344:1-243 [pilon] Processing NODE_1444_length_1283_cov_3.402754:1-1283 [pilon] NODE_12375_length_243_cov_31.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12375_length_243_cov_31.508197:1-243 [pilon] Processing NODE_11385_length_267_cov_36.082192:1-267 [pilon] NODE_3682_length_757_cov_19.454403:1-757 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 312, Coverage: 40, minDepth: 10 [pilon] Confirmed 593 of 757 bases (78.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3682_length_757_cov_19.454403:1-757 [pilon] Processing NODE_1213_length_1385_cov_8.645570:1-1385 [pilon] NODE_12723_length_243_cov_25.926230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12723_length_243_cov_25.926230:1-243 [pilon] Processing NODE_11387_length_267_cov_30.609589:1-267 [pilon] NODE_10794_length_294_cov_7.069364:1-294 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 32, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 294 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10794_length_294_cov_7.069364:1-294 [pilon] Processing NODE_6107_length_531_cov_19.063415:1-531 [pilon] NODE_12907_length_243_cov_24.032787:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 43, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12907_length_243_cov_24.032787:1-243 [pilon] NODE_12336_length_243_cov_32.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_9414_length_349_cov_56.074561:1-349 [pilon] Finished processing NODE_12336_length_243_cov_32.483607:1-243 [pilon] Processing NODE_637_length_1765_cov_18.224453:1-1765 [pilon] NODE_11670_length_258_cov_9.240876:1-258 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 31, Coverage: 8, minDepth: 5 [pilon] Confirmed 214 of 258 bases (82.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11670_length_258_cov_9.240876:1-258 [pilon] NODE_10522_length_303_cov_30.516484:1-303 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 119, Coverage: 7, minDepth: 5 [pilon] Confirmed 166 of 303 bases (54.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10522_length_303_cov_30.516484:1-303 [pilon] Processing NODE_2094_length_1061_cov_19.006383:1-1061 [pilon] Processing NODE_11986_length_246_cov_24.384000:1-246 [pilon] NODE_6484_length_504_cov_25.953003:1-504 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 233, Coverage: 27, minDepth: 7 [pilon] Confirmed 343 of 504 bases (68.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6484_length_504_cov_25.953003:1-504 [pilon] Processing NODE_11737_length_255_cov_20.626866:1-255 [pilon] NODE_1362_length_1313_cov_3.380872:1-1313 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 107, Coverage: 11, minDepth: 5 [pilon] Confirmed 1166 of 1313 bases (88.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1362_length_1313_cov_3.380872:1-1313 [pilon] Processing NODE_11832_length_252_cov_12.824427:1-252 [pilon] NODE_6208_length_524_cov_0.913151:1-524 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 524 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6208_length_524_cov_0.913151:1-524 [pilon] Processing NODE_2900_length_892_cov_21.836576:1-892 [pilon] NODE_2016_length_1082_cov_28.983351:1-1082 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 651, Coverage: 70, minDepth: 18 [pilon] Confirmed 806 of 1082 bases (74.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2016_length_1082_cov_28.983351:1-1082 [pilon] Processing NODE_10579_length_302_cov_17.966851:1-302 [pilon] NODE_9463_length_348_cov_7.599119:1-348 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 348 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9463_length_348_cov_7.599119:1-348 [pilon] Processing NODE_11408_length_267_cov_16.349315:1-267 [pilon] NODE_6136_length_529_cov_15.443627:1-529 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 154, Coverage: 18, minDepth: 5 [pilon] Confirmed 378 of 529 bases (71.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6136_length_529_cov_15.443627:1-529 [pilon] Processing NODE_3972_length_718_cov_2.184255:1-718 [pilon] NODE_14967_length_243_cov_5.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14967_length_243_cov_5.909836:1-243 [pilon] Processing NODE_13038_length_243_cov_22.549180:1-243 [pilon] NODE_12991_length_243_cov_23.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12991_length_243_cov_23.024590:1-243 [pilon] Processing NODE_7559_length_440_cov_32.231975:1-440 [pilon] NODE_11385_length_267_cov_36.082192:1-267 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 102, Coverage: 10, minDepth: 5 [pilon] Confirmed 201 of 267 bases (75.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11385_length_267_cov_36.082192:1-267 [pilon] Processing NODE_8219_length_407_cov_74.241259:1-407 [pilon] NODE_3676_length_758_cov_21.095761:1-758 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 310, Coverage: 47, minDepth: 12 [pilon] Confirmed 529 of 758 bases (69.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3676_length_758_cov_21.095761:1-758 [pilon] Processing NODE_2039_length_1076_cov_14.513089:1-1076 [pilon] NODE_3634_length_763_cov_28.928349:1-763 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 453, Coverage: 51, minDepth: 13 [pilon] Confirmed 628 of 763 bases (82.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3634_length_763_cov_28.928349:1-763 [pilon] Processing NODE_3528_length_779_cov_45.196049:1-779 [pilon] NODE_6107_length_531_cov_19.063415:1-531 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 193, Coverage: 26, minDepth: 7 [pilon] Confirmed 382 of 531 bases (71.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6107_length_531_cov_19.063415:1-531 [pilon] Processing NODE_15232_length_140_cov_16.368421:1-140 [pilon] NODE_11387_length_267_cov_30.609589:1-267 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 101, Coverage: 10, minDepth: 5 [pilon] Confirmed 218 of 267 bases (81.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11387_length_267_cov_30.609589:1-267 [pilon] Processing NODE_10910_length_288_cov_16.401198:1-288 [pilon] NODE_1213_length_1385_cov_8.645570:1-1385 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 259, Coverage: 24, minDepth: 6 [pilon] Confirmed 1100 of 1385 bases (79.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1213_length_1385_cov_8.645570:1-1385 [pilon] Processing NODE_13670_length_243_cov_16.786885:1-243 [pilon] NODE_14628_length_243_cov_9.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14628_length_243_cov_9.221311:1-243 [pilon] Processing NODE_12147_length_243_cov_39.426230:1-243 [pilon] NODE_2229_length_1026_cov_1.809945:1-1026 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 54, Coverage: 7, minDepth: 5 [pilon] Confirmed 521 of 1026 bases (50.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2229_length_1026_cov_1.809945:1-1026 [pilon] Processing NODE_8622_length_387_cov_18.278195:1-387 [pilon] NODE_1444_length_1283_cov_3.402754:1-1283 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 118, Coverage: 11, minDepth: 5 [pilon] Confirmed 1087 of 1283 bases (84.72%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1444_length_1283_cov_3.402754:1-1283 [pilon] Processing NODE_1603_length_1216_cov_22.825571:1-1216 [pilon] NODE_9414_length_349_cov_56.074561:1-349 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 307, Coverage: 40, minDepth: 10 [pilon] Confirmed 313 of 349 bases (89.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9414_length_349_cov_56.074561:1-349 [pilon] Processing NODE_12641_length_243_cov_26.959016:1-243 [pilon] NODE_11986_length_246_cov_24.384000:1-246 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 72, Coverage: 5, minDepth: 5 [pilon] Confirmed 135 of 246 bases (54.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11986_length_246_cov_24.384000:1-246 [pilon] Processing NODE_7482_length_444_cov_12.631579:1-444 [pilon] NODE_2094_length_1061_cov_19.006383:1-1061 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 411, Coverage: 29, minDepth: 7 [pilon] Confirmed 875 of 1061 bases (82.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2094_length_1061_cov_19.006383:1-1061 [pilon] Processing NODE_6404_length_510_cov_13.084833:1-510 [pilon] NODE_2900_length_892_cov_21.836576:1-892 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 398, Coverage: 41, minDepth: 10 [pilon] Confirmed 652 of 892 bases (73.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2900_length_892_cov_21.836576:1-892 [pilon] Processing NODE_4131_length_701_cov_2.253448:1-701 [pilon] NODE_11832_length_252_cov_12.824427:1-252 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 35, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11832_length_252_cov_12.824427:1-252 [pilon] Processing NODE_6101_length_532_cov_2.338200:1-532 [pilon] NODE_13038_length_243_cov_22.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13038_length_243_cov_22.549180:1-243 [pilon] Processing NODE_13432_length_243_cov_18.983607:1-243 [pilon] NODE_3972_length_718_cov_2.184255:1-718 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 39, Coverage: 7, minDepth: 5 [pilon] Confirmed 584 of 718 bases (81.34%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3972_length_718_cov_2.184255:1-718 [pilon] Processing NODE_6173_length_527_cov_0.522167:1-527 [pilon] NODE_11737_length_255_cov_20.626866:1-255 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 54, Coverage: 5, minDepth: 5 [pilon] Confirmed 131 of 255 bases (51.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11737_length_255_cov_20.626866:1-255 [pilon] Processing NODE_4163_length_697_cov_24.427083:1-697 [pilon] NODE_637_length_1765_cov_18.224453:1-1765 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 702, Coverage: 35, minDepth: 9 [pilon] Confirmed 1401 of 1765 bases (79.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_637_length_1765_cov_18.224453:1-1765 [pilon] Processing NODE_12946_length_243_cov_23.459016:1-243 [pilon] NODE_10579_length_302_cov_17.966851:1-302 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 67, Coverage: 6, minDepth: 5 [pilon] Confirmed 220 of 302 bases (72.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10579_length_302_cov_17.966851:1-302 [pilon] Processing NODE_11494_length_264_cov_8.916084:1-264 [pilon] NODE_11408_length_267_cov_16.349315:1-267 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 46, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11408_length_267_cov_16.349315:1-267 [pilon] Processing NODE_14372_length_243_cov_11.270492:1-243 [pilon] NODE_8219_length_407_cov_74.241259:1-407 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 482, Coverage: 80, minDepth: 20 [pilon] Confirmed 358 of 407 bases (87.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8219_length_407_cov_74.241259:1-407 [pilon] Processing NODE_5269_length_595_cov_2.086498:1-595 [pilon] NODE_15232_length_140_cov_16.368421:1-140 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 140 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15232_length_140_cov_16.368421:1-140 [pilon] Processing NODE_12796_length_243_cov_25.057377:1-243 [pilon] NODE_13670_length_243_cov_16.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13670_length_243_cov_16.786885:1-243 [pilon] Processing NODE_1742_length_1163_cov_24.049904:1-1163 [pilon] NODE_10910_length_288_cov_16.401198:1-288 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 41, Coverage: 2, minDepth: 5 [pilon] Confirmed 59 of 288 bases (20.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10910_length_288_cov_16.401198:1-288 [pilon] Processing NODE_9660_length_339_cov_19.403670:1-339 [pilon] NODE_12641_length_243_cov_26.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12641_length_243_cov_26.959016:1-243 [pilon] Processing NODE_6435_length_507_cov_31.243523:1-507 [pilon] NODE_7559_length_440_cov_32.231975:1-440 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 234, Coverage: 28, minDepth: 7 [pilon] Confirmed 371 of 440 bases (84.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7559_length_440_cov_32.231975:1-440 [pilon] Processing NODE_1948_length_1098_cov_22.364381:1-1098 [pilon] NODE_7482_length_444_cov_12.631579:1-444 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 97, Coverage: 8, minDepth: 5 [pilon] Confirmed 271 of 444 bases (61.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7482_length_444_cov_12.631579:1-444 [pilon] Processing NODE_362_length_2107_cov_19.937563:1-2107 [pilon] NODE_6404_length_510_cov_13.084833:1-510 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 106, Coverage: 12, minDepth: 5 [pilon] Confirmed 327 of 510 bases (64.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6404_length_510_cov_13.084833:1-510 [pilon] Processing NODE_4120_length_703_cov_2.221649:1-703 [pilon] NODE_4131_length_701_cov_2.253448:1-701 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 48, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 701 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4131_length_701_cov_2.253448:1-701 [pilon] Processing NODE_4969_length_621_cov_2.202000:1-621 [pilon] NODE_12147_length_243_cov_39.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12147_length_243_cov_39.426230:1-243 [pilon] Processing NODE_2314_length_1007_cov_22.266366:1-1007 [pilon] NODE_6101_length_532_cov_2.338200:1-532 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 30, Coverage: 6, minDepth: 5 [pilon] Confirmed 323 of 532 bases (60.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6101_length_532_cov_2.338200:1-532 [pilon] Processing NODE_9491_length_346_cov_8.457778:1-346 [pilon] NODE_2039_length_1076_cov_14.513089:1-1076 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 360, Coverage: 25, minDepth: 6 [pilon] Confirmed 1013 of 1076 bases (94.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2039_length_1076_cov_14.513089:1-1076 [pilon] Processing NODE_15265_length_123_cov_1.000000:1-123 [pilon] NODE_13432_length_243_cov_18.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 44, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13432_length_243_cov_18.983607:1-243 [pilon] Processing NODE_6181_length_526_cov_0.945679:1-526 [pilon] NODE_3528_length_779_cov_45.196049:1-779 log: [pilon] frags shovill.bam: coverage 99 [pilon] Total Reads: 686, Coverage: 99, minDepth: 25 [pilon] Confirmed 672 of 779 bases (86.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3528_length_779_cov_45.196049:1-779 [pilon] Processing NODE_4449_length_666_cov_12.231193:1-666 [pilon] NODE_8622_length_387_cov_18.278195:1-387 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 128, Coverage: 17, minDepth: 5 [pilon] Confirmed 343 of 387 bases (88.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8622_length_387_cov_18.278195:1-387 [pilon] Processing NODE_6029_length_538_cov_10.326139:1-538 [pilon] NODE_6173_length_527_cov_0.522167:1-527 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 6, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 527 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6173_length_527_cov_0.522167:1-527 [pilon] Processing NODE_6992_length_472_cov_0.529915:1-472 [pilon] NODE_1603_length_1216_cov_22.825571:1-1216 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 655, Coverage: 51, minDepth: 13 [pilon] Confirmed 1048 of 1216 bases (86.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1603_length_1216_cov_22.825571:1-1216 [pilon] Processing NODE_3664_length_759_cov_70.109718:1-759 [pilon] NODE_5269_length_595_cov_2.086498:1-595 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 26, Coverage: 6, minDepth: 5 [pilon] Confirmed 295 of 595 bases (49.58%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5269_length_595_cov_2.086498:1-595 [pilon] Processing NODE_12776_length_243_cov_25.295082:1-243 [pilon] NODE_12796_length_243_cov_25.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12796_length_243_cov_25.057377:1-243 [pilon] Processing NODE_4745_length_639_cov_32.710425:1-639 [pilon] NODE_9660_length_339_cov_19.403670:1-339 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 104, Coverage: 2, minDepth: 5 [pilon] Confirmed 99 of 339 bases (29.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9660_length_339_cov_19.403670:1-339 [pilon] Processing NODE_4506_length_661_cov_7.218519:1-661 [pilon] NODE_4163_length_697_cov_24.427083:1-697 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 344, Coverage: 40, minDepth: 10 [pilon] Confirmed 599 of 697 bases (85.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4163_length_697_cov_24.427083:1-697 [pilon] Processing NODE_12881_length_243_cov_24.229508:1-243 [pilon] NODE_1742_length_1163_cov_24.049904:1-1163 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 619, Coverage: 57, minDepth: 14 [pilon] Confirmed 1030 of 1163 bases (88.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1742_length_1163_cov_24.049904:1-1163 [pilon] Processing NODE_8950_length_369_cov_11.282258:1-369 [pilon] NODE_6435_length_507_cov_31.243523:1-507 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 280, Coverage: 49, minDepth: 12 [pilon] Confirmed 410 of 507 bases (80.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6435_length_507_cov_31.243523:1-507 [pilon] Processing NODE_6634_length_495_cov_3.208556:1-495 [pilon] NODE_11494_length_264_cov_8.916084:1-264 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11494_length_264_cov_8.916084:1-264 [pilon] Processing NODE_10173_length_318_cov_19.431472:1-318 [pilon] NODE_12946_length_243_cov_23.459016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12946_length_243_cov_23.459016:1-243 [pilon] Processing NODE_13309_length_243_cov_20.188525:1-243 [pilon] NODE_362_length_2107_cov_19.937563:1-2107 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 813, Coverage: 30, minDepth: 8 [pilon] Confirmed 1474 of 2107 bases (69.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_362_length_2107_cov_19.937563:1-2107 [pilon] Processing NODE_5735_length_560_cov_24.681093:1-560 [pilon] NODE_14372_length_243_cov_11.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14372_length_243_cov_11.270492:1-243 [pilon] Processing NODE_1580_length_1227_cov_2.821881:1-1227 [pilon] NODE_4120_length_703_cov_2.221649:1-703 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 42, Coverage: 8, minDepth: 5 [pilon] Confirmed 539 of 703 bases (76.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4120_length_703_cov_2.221649:1-703 [pilon] Processing NODE_9021_length_365_cov_70.176230:1-365 [pilon] NODE_9491_length_346_cov_8.457778:1-346 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 72, Coverage: 7, minDepth: 5 [pilon] Confirmed 194 of 346 bases (56.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9491_length_346_cov_8.457778:1-346 [pilon] Processing NODE_13360_length_243_cov_19.754098:1-243 [pilon] NODE_4969_length_621_cov_2.202000:1-621 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 40, Coverage: 8, minDepth: 5 [pilon] Confirmed 385 of 621 bases (62.00%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4969_length_621_cov_2.202000:1-621 [pilon] Processing NODE_9890_length_330_cov_21.650718:1-330 [pilon] NODE_6181_length_526_cov_0.945679:1-526 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 105 of 526 bases (19.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6181_length_526_cov_0.945679:1-526 [pilon] Processing NODE_490_length_1917_cov_3.371938:1-1917 [pilon] NODE_1948_length_1098_cov_22.364381:1-1098 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 509, Coverage: 46, minDepth: 12 [pilon] Confirmed 756 of 1098 bases (68.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1948_length_1098_cov_22.364381:1-1098 [pilon] Processing NODE_13911_length_243_cov_14.811475:1-243 [pilon] NODE_6992_length_472_cov_0.529915:1-472 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 8, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 472 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6992_length_472_cov_0.529915:1-472 [pilon] Processing NODE_3652_length_761_cov_46.362500:1-761 [pilon] NODE_2314_length_1007_cov_22.266366:1-1007 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 470, Coverage: 34, minDepth: 9 [pilon] Confirmed 933 of 1007 bases (92.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2314_length_1007_cov_22.266366:1-1007 [pilon] Processing NODE_1454_length_1279_cov_17.471503:1-1279 [pilon] NODE_12776_length_243_cov_25.295082:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12776_length_243_cov_25.295082:1-243 [pilon] Processing NODE_9814_length_333_cov_24.627358:1-333 [pilon] NODE_15265_length_123_cov_1.000000:1-123 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 123 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15265_length_123_cov_1.000000:1-123 [pilon] Processing NODE_10791_length_294_cov_8.774566:1-294 [pilon] NODE_4745_length_639_cov_32.710425:1-639 log: [pilon] frags shovill.bam: coverage 64 [pilon] Total Reads: 405, Coverage: 64, minDepth: 16 [pilon] Confirmed 551 of 639 bases (86.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4745_length_639_cov_32.710425:1-639 [pilon] Processing NODE_4009_length_715_cov_0.818182:1-715 [pilon] NODE_4506_length_661_cov_7.218519:1-661 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 111, Coverage: 12, minDepth: 5 [pilon] Confirmed 530 of 661 bases (80.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4506_length_661_cov_7.218519:1-661 [pilon] Processing NODE_7061_length_467_cov_31.554913:1-467 [pilon] NODE_4449_length_666_cov_12.231193:1-666 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 134, Coverage: 22, minDepth: 6 [pilon] Confirmed 482 of 666 bases (72.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4449_length_666_cov_12.231193:1-666 [pilon] Processing NODE_12985_length_243_cov_23.106557:1-243 [pilon] NODE_6634_length_495_cov_3.208556:1-495 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 37, Coverage: 9, minDepth: 5 [pilon] Confirmed 419 of 495 bases (84.65%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6634_length_495_cov_3.208556:1-495 [pilon] Processing NODE_9229_length_357_cov_9.313559:1-357 [pilon] NODE_8950_length_369_cov_11.282258:1-369 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 49, Coverage: 7, minDepth: 5 [pilon] Confirmed 175 of 369 bases (47.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8950_length_369_cov_11.282258:1-369 [pilon] Processing NODE_12561_length_243_cov_28.122951:1-243 [pilon] NODE_3664_length_759_cov_70.109718:1-759 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 856, Coverage: 18, minDepth: 5 [pilon] Confirmed 541 of 759 bases (71.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3664_length_759_cov_70.109718:1-759 [pilon] Processing NODE_3117_length_848_cov_24.755158:1-848 [pilon] NODE_6029_length_538_cov_10.326139:1-538 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 109, Coverage: 7, minDepth: 5 [pilon] Confirmed 249 of 538 bases (46.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6029_length_538_cov_10.326139:1-538 [pilon] Processing NODE_4997_length_619_cov_0.863454:1-619 [pilon] NODE_5735_length_560_cov_24.681093:1-560 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 263, Coverage: 43, minDepth: 11 [pilon] Confirmed 439 of 560 bases (78.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5735_length_560_cov_24.681093:1-560 [pilon] Processing NODE_8677_length_384_cov_10.961977:1-384 [pilon] NODE_13360_length_243_cov_19.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13360_length_243_cov_19.754098:1-243 [pilon] Processing NODE_14023_length_243_cov_14.024590:1-243 [pilon] NODE_9021_length_365_cov_70.176230:1-365 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 400, Coverage: 66, minDepth: 17 [pilon] Confirmed 314 of 365 bases (86.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9021_length_365_cov_70.176230:1-365 [pilon] Processing NODE_3901_length_728_cov_2.032949:1-728 [pilon] NODE_9890_length_330_cov_21.650718:1-330 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 113, Coverage: 15, minDepth: 5 [pilon] Confirmed 269 of 330 bases (81.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9890_length_330_cov_21.650718:1-330 [pilon] Processing NODE_11331_length_270_cov_20.644295:1-270 [pilon] NODE_12881_length_243_cov_24.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12881_length_243_cov_24.229508:1-243 [pilon] Processing NODE_9775_length_336_cov_5.237209:1-336 [pilon] NODE_13309_length_243_cov_20.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 56, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13309_length_243_cov_20.188525:1-243 [pilon] Processing NODE_8405_length_399_cov_20.733813:1-399 [pilon] NODE_10173_length_318_cov_19.431472:1-318 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 72, Coverage: 3, minDepth: 5 [pilon] Confirmed 127 of 318 bases (39.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10173_length_318_cov_19.431472:1-318 [pilon] Processing NODE_766_length_1646_cov_19.795410:1-1646 [pilon] NODE_490_length_1917_cov_3.371938:1-1917 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 158, Coverage: 11, minDepth: 5 [pilon] Confirmed 1690 of 1917 bases (88.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_490_length_1917_cov_3.371938:1-1917 [pilon] Processing NODE_6342_length_514_cov_19.221374:1-514 [pilon] NODE_1580_length_1227_cov_2.821881:1-1227 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 89, Coverage: 9, minDepth: 5 [pilon] Confirmed 1061 of 1227 bases (86.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1580_length_1227_cov_2.821881:1-1227 [pilon] Processing NODE_3944_length_722_cov_1.464226:1-722 [pilon] NODE_3652_length_761_cov_46.362500:1-761 log: [pilon] frags shovill.bam: coverage 100 [pilon] Total Reads: 753, Coverage: 100, minDepth: 25 [pilon] Confirmed 596 of 761 bases (78.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3652_length_761_cov_46.362500:1-761 [pilon] Processing NODE_814_length_1620_cov_3.589059:1-1620 [pilon] NODE_9814_length_333_cov_24.627358:1-333 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 103, Coverage: 13, minDepth: 5 [pilon] Confirmed 244 of 333 bases (73.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9814_length_333_cov_24.627358:1-333 [pilon] Processing NODE_9800_length_334_cov_12.032864:1-334 [pilon] NODE_4009_length_715_cov_0.818182:1-715 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 139 of 715 bases (19.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4009_length_715_cov_0.818182:1-715 [pilon] Processing NODE_14739_length_243_cov_8.221311:1-243 [pilon] NODE_7061_length_467_cov_31.554913:1-467 log: [pilon] frags shovill.bam: coverage 61 [pilon] Total Reads: 340, Coverage: 61, minDepth: 15 [pilon] Confirmed 382 of 467 bases (81.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7061_length_467_cov_31.554913:1-467 [pilon] Processing NODE_11973_length_246_cov_30.736000:1-246 [pilon] NODE_9229_length_357_cov_9.313559:1-357 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 46, Coverage: 6, minDepth: 5 [pilon] Confirmed 214 of 357 bases (59.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9229_length_357_cov_9.313559:1-357 [pilon] Processing NODE_7923_length_422_cov_1.710963:1-422 [pilon] NODE_13911_length_243_cov_14.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13911_length_243_cov_14.811475:1-243 [pilon] NODE_10791_length_294_cov_8.774566:1-294 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 22, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 294 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_12975_length_243_cov_23.221311:1-243 [pilon] Finished processing NODE_10791_length_294_cov_8.774566:1-294 [pilon] Processing NODE_10866_length_289_cov_25.767857:1-289 [pilon] NODE_8677_length_384_cov_10.961977:1-384 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 61, Coverage: 6, minDepth: 5 [pilon] Confirmed 146 of 384 bases (38.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8677_length_384_cov_10.961977:1-384 [pilon] Processing NODE_1610_length_1213_cov_5.154762:1-1213 [pilon] NODE_12561_length_243_cov_28.122951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12561_length_243_cov_28.122951:1-243 [pilon] Processing NODE_657_length_1740_cov_19.904880:1-1740 [pilon] NODE_3901_length_728_cov_2.032949:1-728 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 30, Coverage: 5, minDepth: 5 [pilon] Confirmed 295 of 728 bases (40.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3901_length_728_cov_2.032949:1-728 [pilon] Processing NODE_4908_length_625_cov_37.736111:1-625 [pilon] NODE_1454_length_1279_cov_17.471503:1-1279 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 557, Coverage: 44, minDepth: 11 [pilon] Confirmed 1062 of 1279 bases (83.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1454_length_1279_cov_17.471503:1-1279 [pilon] Processing NODE_13834_length_243_cov_15.377049:1-243 [pilon] NODE_11331_length_270_cov_20.644295:1-270 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 60, Coverage: 4, minDepth: 5 [pilon] Confirmed 126 of 270 bases (46.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11331_length_270_cov_20.644295:1-270 [pilon] Processing NODE_6517_length_502_cov_19.023622:1-502 [pilon] NODE_14023_length_243_cov_14.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14023_length_243_cov_14.024590:1-243 [pilon] Processing NODE_5569_length_573_cov_4.422566:1-573 [pilon] NODE_3117_length_848_cov_24.755158:1-848 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 416, Coverage: 44, minDepth: 11 [pilon] Confirmed 798 of 848 bases (94.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3117_length_848_cov_24.755158:1-848 [pilon] Processing NODE_400_length_2046_cov_22.179221:1-2046 [pilon] NODE_12985_length_243_cov_23.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12985_length_243_cov_23.106557:1-243 [pilon] Processing NODE_1600_length_1218_cov_2.858706:1-1218 [pilon] NODE_6342_length_514_cov_19.221374:1-514 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 187, Coverage: 20, minDepth: 5 [pilon] Confirmed 480 of 514 bases (93.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6342_length_514_cov_19.221374:1-514 [pilon] Processing NODE_5537_length_575_cov_1.162996:1-575 [pilon] NODE_4997_length_619_cov_0.863454:1-619 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 142 of 619 bases (22.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4997_length_619_cov_0.863454:1-619 [pilon] Processing NODE_2044_length_1074_cov_11.684155:1-1074 [pilon] NODE_814_length_1620_cov_3.589059:1-1620 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 152, Coverage: 12, minDepth: 5 [pilon] Confirmed 1332 of 1620 bases (82.22%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_814_length_1620_cov_3.589059:1-1620 [pilon] Processing NODE_4651_length_648_cov_4.960152:1-648 [pilon] NODE_14739_length_243_cov_8.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14739_length_243_cov_8.221311:1-243 [pilon] Processing NODE_11372_length_269_cov_5.614865:1-269 [pilon] NODE_9800_length_334_cov_12.032864:1-334 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 52, Coverage: 10, minDepth: 5 [pilon] Confirmed 231 of 334 bases (69.16%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9800_length_334_cov_12.032864:1-334 [pilon] Processing NODE_2409_length_989_cov_14.527650:1-989 [pilon] NODE_766_length_1646_cov_19.795410:1-1646 log: [pilon] frags shovill.bam: coverage 72 [pilon] Total Reads: 958, Coverage: 72, minDepth: 18 [pilon] Confirmed 1338 of 1646 bases (81.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_766_length_1646_cov_19.795410:1-1646 [pilon] Processing NODE_7004_length_471_cov_12.857143:1-471 [pilon] NODE_8405_length_399_cov_20.733813:1-399 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 133, Coverage: 19, minDepth: 5 [pilon] Confirmed 350 of 399 bases (87.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8405_length_399_cov_20.733813:1-399 [pilon] Processing NODE_10377_length_309_cov_28.457447:1-309 [pilon] NODE_11973_length_246_cov_30.736000:1-246 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 90, Coverage: 8, minDepth: 5 [pilon] Confirmed 177 of 246 bases (71.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11973_length_246_cov_30.736000:1-246 [pilon] Processing NODE_14922_length_243_cov_6.483607:1-243 [pilon] NODE_9775_length_336_cov_5.237209:1-336 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 30, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 336 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9775_length_336_cov_5.237209:1-336 [pilon] Processing NODE_912_length_1549_cov_7.652661:1-1549 [pilon] NODE_7923_length_422_cov_1.710963:1-422 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 202 of 422 bases (47.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7923_length_422_cov_1.710963:1-422 [pilon] Processing NODE_7628_length_436_cov_7.288889:1-436 [pilon] NODE_3944_length_722_cov_1.464226:1-722 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 25, Coverage: 5, minDepth: 5 [pilon] Confirmed 315 of 722 bases (43.63%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3944_length_722_cov_1.464226:1-722 [pilon] Processing NODE_12139_length_243_cov_40.475410:1-243 [pilon] NODE_4908_length_625_cov_37.736111:1-625 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 518, Coverage: 50, minDepth: 13 [pilon] Confirmed 457 of 625 bases (73.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4908_length_625_cov_37.736111:1-625 [pilon] Processing NODE_4825_length_632_cov_24.270059:1-632 [pilon] NODE_1610_length_1213_cov_5.154762:1-1213 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 161, Coverage: 14, minDepth: 5 [pilon] Confirmed 1023 of 1213 bases (84.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1610_length_1213_cov_5.154762:1-1213 [pilon] Processing NODE_12557_length_243_cov_28.172131:1-243 [pilon] NODE_6517_length_502_cov_19.023622:1-502 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 170, Coverage: 15, minDepth: 5 [pilon] Confirmed 383 of 502 bases (76.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6517_length_502_cov_19.023622:1-502 [pilon] Processing NODE_7615_length_437_cov_0.639241:1-437 [pilon] NODE_5537_length_575_cov_1.162996:1-575 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 36 of 575 bases (6.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5537_length_575_cov_1.162996:1-575 [pilon] NODE_10866_length_289_cov_25.767857:1-289 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 94, Coverage: 12, minDepth: 5 [pilon] Confirmed 236 of 289 bases (81.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10866_length_289_cov_25.767857:1-289 [pilon] Processing NODE_3289_length_817_cov_2.840517:1-817 [pilon] NODE_12975_length_243_cov_23.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12975_length_243_cov_23.221311:1-243 [pilon] Processing NODE_11254_length_273_cov_21.342105:1-273 [pilon] NODE_400_length_2046_cov_22.179221:1-2046 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 921, Coverage: 32, minDepth: 8 [pilon] Confirmed 1755 of 2046 bases (85.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_400_length_2046_cov_22.179221:1-2046 [pilon] Processing NODE_13995_length_243_cov_14.221311:1-243 [pilon] NODE_13834_length_243_cov_15.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13834_length_243_cov_15.377049:1-243 [pilon] Processing NODE_8070_length_414_cov_40.621160:1-414 [pilon] NODE_4651_length_648_cov_4.960152:1-648 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 76, Coverage: 15, minDepth: 5 [pilon] Confirmed 577 of 648 bases (89.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4651_length_648_cov_4.960152:1-648 [pilon] Processing NODE_1384_length_1303_cov_29.025381:1-1303 [pilon] NODE_11372_length_269_cov_5.614865:1-269 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 269 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11372_length_269_cov_5.614865:1-269 [pilon] Processing NODE_14193_length_243_cov_12.663934:1-243 [pilon] NODE_657_length_1740_cov_19.904880:1-1740 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 728, Coverage: 47, minDepth: 12 [pilon] Confirmed 1494 of 1740 bases (85.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_657_length_1740_cov_19.904880:1-1740 [pilon] Processing NODE_11719_length_255_cov_26.671642:1-255 [pilon] NODE_2409_length_989_cov_14.527650:1-989 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 297, Coverage: 27, minDepth: 7 [pilon] Confirmed 774 of 989 bases (78.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2409_length_989_cov_14.527650:1-989 [pilon] Processing NODE_14379_length_243_cov_11.229508:1-243 [pilon] NODE_7004_length_471_cov_12.857143:1-471 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 104, Coverage: 14, minDepth: 5 [pilon] Confirmed 368 of 471 bases (78.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7004_length_471_cov_12.857143:1-471 [pilon] Processing NODE_14078_length_243_cov_13.639344:1-243 [pilon] NODE_5569_length_573_cov_4.422566:1-573 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 40, Coverage: 9, minDepth: 5 [pilon] Confirmed 319 of 573 bases (55.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5569_length_573_cov_4.422566:1-573 [pilon] Processing NODE_1239_length_1370_cov_4.364291:1-1370 [pilon] NODE_1600_length_1218_cov_2.858706:1-1218 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 81, Coverage: 8, minDepth: 5 [pilon] Confirmed 905 of 1218 bases (74.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1600_length_1218_cov_2.858706:1-1218 [pilon] Processing NODE_14885_length_243_cov_6.852459:1-243 [pilon] NODE_2044_length_1074_cov_11.684155:1-1074 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 270, Coverage: 25, minDepth: 6 [pilon] Confirmed 895 of 1074 bases (83.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2044_length_1074_cov_11.684155:1-1074 [pilon] Processing NODE_4032_length_712_cov_4.362098:1-712 [pilon] NODE_14922_length_243_cov_6.483607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14922_length_243_cov_6.483607:1-243 [pilon] Processing NODE_8981_length_367_cov_27.199187:1-367 [pilon] NODE_7628_length_436_cov_7.288889:1-436 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 56, Coverage: 6, minDepth: 5 [pilon] Confirmed 263 of 436 bases (60.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7628_length_436_cov_7.288889:1-436 [pilon] Processing NODE_2995_length_874_cov_2.030544:1-874 [pilon] NODE_4825_length_632_cov_24.270059:1-632 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 286, Coverage: 37, minDepth: 9 [pilon] Confirmed 532 of 632 bases (84.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4825_length_632_cov_24.270059:1-632 [pilon] Processing NODE_13629_length_243_cov_17.213115:1-243 [pilon] NODE_12557_length_243_cov_28.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12557_length_243_cov_28.172131:1-243 [pilon] Processing NODE_13744_length_243_cov_16.098361:1-243 [pilon] NODE_10377_length_309_cov_28.457447:1-309 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 91, Coverage: 7, minDepth: 5 [pilon] Confirmed 193 of 309 bases (62.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10377_length_309_cov_28.457447:1-309 [pilon] Processing NODE_2029_length_1079_cov_1.189979:1-1079 [pilon] NODE_912_length_1549_cov_7.652661:1-1549 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 263, Coverage: 19, minDepth: 5 [pilon] Confirmed 1097 of 1549 bases (70.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_912_length_1549_cov_7.652661:1-1549 [pilon] Processing NODE_8722_length_381_cov_16.457692:1-381 [pilon] NODE_12139_length_243_cov_40.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12139_length_243_cov_40.475410:1-243 [pilon] Processing NODE_8047_length_416_cov_0.816949:1-416 [pilon] NODE_7615_length_437_cov_0.639241:1-437 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 5, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 437 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7615_length_437_cov_0.639241:1-437 [pilon] Processing NODE_9355_length_351_cov_31.408696:1-351 [pilon] NODE_3289_length_817_cov_2.840517:1-817 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 53, Coverage: 8, minDepth: 5 [pilon] Confirmed 528 of 817 bases (64.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3289_length_817_cov_2.840517:1-817 [pilon] Processing NODE_15247_length_128_cov_34.857143:1-128 [pilon] NODE_1384_length_1303_cov_29.025381:1-1303 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 790, Coverage: 46, minDepth: 12 [pilon] Confirmed 1073 of 1303 bases (82.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1384_length_1303_cov_29.025381:1-1303 [pilon] Processing NODE_4280_length_683_cov_56.387900:1-683 [pilon] NODE_14078_length_243_cov_13.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14078_length_243_cov_13.639344:1-243 [pilon] Processing NODE_13031_length_243_cov_22.631148:1-243 [pilon] NODE_8070_length_414_cov_40.621160:1-414 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 287, Coverage: 57, minDepth: 14 [pilon] Confirmed 371 of 414 bases (89.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8070_length_414_cov_40.621160:1-414 [pilon] Processing NODE_2558_length_955_cov_19.990408:1-955 [pilon] NODE_14193_length_243_cov_12.663934:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14193_length_243_cov_12.663934:1-243 [pilon] Processing NODE_13708_length_243_cov_16.352459:1-243 [pilon] NODE_14379_length_243_cov_11.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14379_length_243_cov_11.229508:1-243 [pilon] Processing NODE_6430_length_508_cov_3.540052:1-508 [pilon] NODE_13995_length_243_cov_14.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13995_length_243_cov_14.221311:1-243 [pilon] Processing NODE_1763_length_1157_cov_30.654440:1-1157 [pilon] NODE_11254_length_273_cov_21.342105:1-273 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 61, Coverage: 5, minDepth: 5 [pilon] Confirmed 133 of 273 bases (48.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11254_length_273_cov_21.342105:1-273 [pilon] Processing NODE_10392_length_309_cov_16.792553:1-309 [pilon] NODE_11719_length_255_cov_26.671642:1-255 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 82, Coverage: 11, minDepth: 5 [pilon] Confirmed 211 of 255 bases (82.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11719_length_255_cov_26.671642:1-255 [pilon] Processing NODE_4767_length_638_cov_12.040619:1-638 [pilon] NODE_14885_length_243_cov_6.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14885_length_243_cov_6.852459:1-243 [pilon] Processing NODE_1902_length_1112_cov_16.564077:1-1112 [pilon] NODE_13629_length_243_cov_17.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13629_length_243_cov_17.213115:1-243 [pilon] Processing NODE_6575_length_498_cov_26.716180:1-498 [pilon] NODE_8981_length_367_cov_27.199187:1-367 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 156, Coverage: 3, minDepth: 5 [pilon] Confirmed 126 of 367 bases (34.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8981_length_367_cov_27.199187:1-367 [pilon] Processing NODE_14485_length_243_cov_10.368852:1-243 [pilon] NODE_4032_length_712_cov_4.362098:1-712 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 61, Coverage: 11, minDepth: 5 [pilon] Confirmed 436 of 712 bases (61.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4032_length_712_cov_4.362098:1-712 [pilon] Processing NODE_14890_length_243_cov_6.786885:1-243 [pilon] NODE_1239_length_1370_cov_4.364291:1-1370 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 128, Coverage: 12, minDepth: 5 [pilon] Confirmed 1066 of 1370 bases (77.81%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1239_length_1370_cov_4.364291:1-1370 [pilon] Processing NODE_13793_length_243_cov_15.754098:1-243 [pilon] NODE_13744_length_243_cov_16.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13744_length_243_cov_16.098361:1-243 [pilon] Processing NODE_3846_length_735_cov_1.084691:1-735 [pilon] NODE_2995_length_874_cov_2.030544:1-874 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 42, Coverage: 6, minDepth: 5 [pilon] Confirmed 340 of 874 bases (38.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2995_length_874_cov_2.030544:1-874 [pilon] Processing NODE_14098_length_243_cov_13.467213:1-243 [pilon] NODE_2029_length_1079_cov_1.189979:1-1079 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 41, Coverage: 5, minDepth: 5 [pilon] Confirmed 387 of 1079 bases (35.87%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2029_length_1079_cov_1.189979:1-1079 [pilon] Processing NODE_11495_length_264_cov_8.846154:1-264 [pilon] NODE_8047_length_416_cov_0.816949:1-416 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 8, Coverage: 3, minDepth: 5 [pilon] Confirmed 90 of 416 bases (21.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8047_length_416_cov_0.816949:1-416 [pilon] Processing NODE_7116_length_465_cov_4.857558:1-465 [pilon] NODE_9355_length_351_cov_31.408696:1-351 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 178, Coverage: 5, minDepth: 5 [pilon] Confirmed 142 of 351 bases (40.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9355_length_351_cov_31.408696:1-351 [pilon] Processing NODE_13372_length_243_cov_19.622951:1-243 [pilon] NODE_8722_length_381_cov_16.457692:1-381 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 96, Coverage: 14, minDepth: 5 [pilon] Confirmed 283 of 381 bases (74.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8722_length_381_cov_16.457692:1-381 [pilon] Processing NODE_1002_length_1492_cov_2.420131:1-1492 [pilon] NODE_15247_length_128_cov_34.857143:1-128 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 128 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15247_length_128_cov_34.857143:1-128 [pilon] Processing NODE_5673_length_565_cov_7.925676:1-565 [pilon] NODE_4280_length_683_cov_56.387900:1-683 log: [pilon] frags shovill.bam: coverage 97 [pilon] Total Reads: 680, Coverage: 97, minDepth: 24 [pilon] Confirmed 609 of 683 bases (89.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4280_length_683_cov_56.387900:1-683 [pilon] Processing NODE_11601_length_260_cov_17.546763:1-260 [pilon] NODE_13031_length_243_cov_22.631148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 58, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13031_length_243_cov_22.631148:1-243 [pilon] Processing NODE_3916_length_726_cov_1.406612:1-726 [pilon] NODE_2558_length_955_cov_19.990408:1-955 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 403, Coverage: 40, minDepth: 10 [pilon] Confirmed 840 of 955 bases (87.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2558_length_955_cov_19.990408:1-955 [pilon] Processing NODE_7887_length_423_cov_23.294702:1-423 [pilon] NODE_1763_length_1157_cov_30.654440:1-1157 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 749, Coverage: 67, minDepth: 17 [pilon] Confirmed 1074 of 1157 bases (92.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1763_length_1157_cov_30.654440:1-1157 [pilon] Processing NODE_3409_length_797_cov_15.408284:1-797 [pilon] NODE_13708_length_243_cov_16.352459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13708_length_243_cov_16.352459:1-243 [pilon] Processing NODE_12554_length_243_cov_28.213115:1-243 [pilon] NODE_6430_length_508_cov_3.540052:1-508 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 52, Coverage: 6, minDepth: 5 [pilon] Confirmed 317 of 508 bases (62.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6430_length_508_cov_3.540052:1-508 [pilon] Processing NODE_4546_length_657_cov_26.546642:1-657 [pilon] NODE_10392_length_309_cov_16.792553:1-309 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 54, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 309 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10392_length_309_cov_16.792553:1-309 [pilon] Processing NODE_4888_length_627_cov_27.545455:1-627 [pilon] NODE_4767_length_638_cov_12.040619:1-638 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 153, Coverage: 23, minDepth: 6 [pilon] Confirmed 416 of 638 bases (65.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4767_length_638_cov_12.040619:1-638 [pilon] Processing NODE_286_length_2270_cov_14.872499:1-2270 [pilon] NODE_14485_length_243_cov_10.368852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14485_length_243_cov_10.368852:1-243 [pilon] Processing NODE_14398_length_243_cov_11.081967:1-243 [pilon] NODE_1902_length_1112_cov_16.564077:1-1112 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 467, Coverage: 46, minDepth: 12 [pilon] Confirmed 807 of 1112 bases (72.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1902_length_1112_cov_16.564077:1-1112 [pilon] Processing NODE_2668_length_934_cov_43.937269:1-934 [pilon] NODE_3846_length_735_cov_1.084691:1-735 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 24, Coverage: 4, minDepth: 5 [pilon] Confirmed 240 of 735 bases (32.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3846_length_735_cov_1.084691:1-735 [pilon] Processing NODE_1700_length_1179_cov_21.557656:1-1179 [pilon] NODE_14890_length_243_cov_6.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14890_length_243_cov_6.786885:1-243 [pilon] Processing NODE_9260_length_355_cov_17.346154:1-355 [pilon] NODE_14098_length_243_cov_13.467213:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14098_length_243_cov_13.467213:1-243 [pilon] Processing NODE_10077_length_322_cov_13.358209:1-322 [pilon] NODE_6575_length_498_cov_26.716180:1-498 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 216, Coverage: 37, minDepth: 9 [pilon] Confirmed 438 of 498 bases (87.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6575_length_498_cov_26.716180:1-498 [pilon] Processing NODE_1724_length_1172_cov_2.562322:1-1172 [pilon] NODE_7116_length_465_cov_4.857558:1-465 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 38, Coverage: 10, minDepth: 5 [pilon] Confirmed 336 of 465 bases (72.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7116_length_465_cov_4.857558:1-465 [pilon] Processing NODE_2295_length_1012_cov_10.810325:1-1012 [pilon] NODE_13372_length_243_cov_19.622951:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13372_length_243_cov_19.622951:1-243 [pilon] Processing NODE_1955_length_1096_cov_21.495385:1-1096 [pilon] NODE_13793_length_243_cov_15.754098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13793_length_243_cov_15.754098:1-243 [pilon] Processing NODE_12132_length_243_cov_41.516393:1-243 [pilon] NODE_11601_length_260_cov_17.546763:1-260 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 53, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 260 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11601_length_260_cov_17.546763:1-260 [pilon] Processing NODE_13922_length_243_cov_14.721311:1-243 [pilon] NODE_11495_length_264_cov_8.846154:1-264 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11495_length_264_cov_8.846154:1-264 [pilon] Processing NODE_8743_length_380_cov_36.509653:1-380 [pilon] NODE_3409_length_797_cov_15.408284:1-797 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 263, Coverage: 28, minDepth: 7 [pilon] Confirmed 666 of 797 bases (83.56%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3409_length_797_cov_15.408284:1-797 [pilon] Processing NODE_5103_length_610_cov_13.801636:1-610 [pilon] NODE_5673_length_565_cov_7.925676:1-565 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 93, Coverage: 8, minDepth: 5 [pilon] Confirmed 424 of 565 bases (75.04%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5673_length_565_cov_7.925676:1-565 [pilon] Processing NODE_3326_length_811_cov_2.653623:1-811 [pilon] NODE_1002_length_1492_cov_2.420131:1-1492 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 87, Coverage: 7, minDepth: 5 [pilon] Confirmed 942 of 1492 bases (63.14%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1002_length_1492_cov_2.420131:1-1492 [pilon] Processing NODE_5555_length_574_cov_1.066225:1-574 [pilon] NODE_286_length_2270_cov_14.872499:1-2270 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 731, Coverage: 39, minDepth: 10 [pilon] Confirmed 1866 of 2270 bases (82.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_286_length_2270_cov_14.872499:1-2270 [pilon] Processing NODE_8944_length_369_cov_13.963710:1-369 [pilon] NODE_7887_length_423_cov_23.294702:1-423 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 119, Coverage: 14, minDepth: 5 [pilon] Confirmed 262 of 423 bases (61.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7887_length_423_cov_23.294702:1-423 [pilon] Processing NODE_5289_length_593_cov_26.794492:1-593 [pilon] NODE_3916_length_726_cov_1.406612:1-726 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 329 of 726 bases (45.32%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3916_length_726_cov_1.406612:1-726 [pilon] Processing NODE_2218_length_1029_cov_22.005507:1-1029 [pilon] NODE_14398_length_243_cov_11.081967:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14398_length_243_cov_11.081967:1-243 [pilon] Processing NODE_7644_length_435_cov_31.646497:1-435 [pilon] NODE_10077_length_322_cov_13.358209:1-322 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 74, Coverage: 10, minDepth: 5 [pilon] Confirmed 276 of 322 bases (85.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10077_length_322_cov_13.358209:1-322 [pilon] Processing NODE_11257_length_273_cov_19.361842:1-273 [pilon] NODE_2668_length_934_cov_43.937269:1-934 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 906, Coverage: 59, minDepth: 15 [pilon] Confirmed 765 of 934 bases (81.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2668_length_934_cov_43.937269:1-934 [pilon] Processing NODE_484_length_1925_cov_23.029933:1-1925 [pilon] NODE_1700_length_1179_cov_21.557656:1-1179 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 559, Coverage: 38, minDepth: 10 [pilon] Confirmed 1054 of 1179 bases (89.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1700_length_1179_cov_21.557656:1-1179 [pilon] Processing NODE_5646_length_567_cov_26.015695:1-567 [pilon] NODE_4546_length_657_cov_26.546642:1-657 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 324, Coverage: 47, minDepth: 12 [pilon] Confirmed 449 of 657 bases (68.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4546_length_657_cov_26.546642:1-657 [pilon] Processing NODE_10138_length_320_cov_30.582915:1-320 [pilon] NODE_12554_length_243_cov_28.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12554_length_243_cov_28.213115:1-243 [pilon] Processing NODE_8081_length_414_cov_16.955631:1-414 [pilon] NODE_2295_length_1012_cov_10.810325:1-1012 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 220, Coverage: 26, minDepth: 7 [pilon] Confirmed 760 of 1012 bases (75.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2295_length_1012_cov_10.810325:1-1012 [pilon] Processing NODE_6249_length_521_cov_7.112500:1-521 [pilon] NODE_4888_length_627_cov_27.545455:1-627 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 318, Coverage: 38, minDepth: 10 [pilon] Confirmed 567 of 627 bases (90.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4888_length_627_cov_27.545455:1-627 [pilon] Processing NODE_2541_length_958_cov_49.393070:1-958 [pilon] NODE_13922_length_243_cov_14.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13922_length_243_cov_14.721311:1-243 [pilon] Processing NODE_13109_length_243_cov_21.868852:1-243 [pilon] NODE_5103_length_610_cov_13.801636:1-610 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 202, Coverage: 28, minDepth: 7 [pilon] Confirmed 393 of 610 bases (64.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5103_length_610_cov_13.801636:1-610 [pilon] Processing NODE_6731_length_488_cov_12.678474:1-488 [pilon] NODE_1724_length_1172_cov_2.562322:1-1172 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 71, Coverage: 8, minDepth: 5 [pilon] Confirmed 896 of 1172 bases (76.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1724_length_1172_cov_2.562322:1-1172 [pilon] Processing NODE_3297_length_815_cov_21.345821:1-815 [pilon] NODE_9260_length_355_cov_17.346154:1-355 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 86, Coverage: 2, minDepth: 5 [pilon] Confirmed 102 of 355 bases (28.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9260_length_355_cov_17.346154:1-355 [pilon] Processing NODE_11431_length_267_cov_5.732877:1-267 [pilon] NODE_12132_length_243_cov_41.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 72, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12132_length_243_cov_41.516393:1-243 [pilon] Processing NODE_15217_length_150_cov_9.620690:1-150 [pilon] NODE_5289_length_593_cov_26.794492:1-593 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 337, Coverage: 40, minDepth: 10 [pilon] Confirmed 514 of 593 bases (86.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5289_length_593_cov_26.794492:1-593 [pilon] Processing NODE_10602_length_300_cov_36.726257:1-300 [pilon] NODE_8944_length_369_cov_13.963710:1-369 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 61, Coverage: 2, minDepth: 5 [pilon] Confirmed 129 of 369 bases (34.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8944_length_369_cov_13.963710:1-369 [pilon] Processing NODE_8215_length_408_cov_1.149826:1-408 [pilon] NODE_5555_length_574_cov_1.066225:1-574 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 115 of 574 bases (20.03%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5555_length_574_cov_1.066225:1-574 [pilon] Processing NODE_7986_length_419_cov_1.607383:1-419 [pilon] NODE_1955_length_1096_cov_21.495385:1-1096 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 615, Coverage: 63, minDepth: 16 [pilon] Confirmed 592 of 1096 bases (54.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1955_length_1096_cov_21.495385:1-1096 [pilon] Processing NODE_7796_length_428_cov_0.745928:1-428 [pilon] NODE_11257_length_273_cov_19.361842:1-273 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 57, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 273 bases (47.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11257_length_273_cov_19.361842:1-273 [pilon] Processing NODE_8819_length_375_cov_53.877953:1-375 [pilon] NODE_8743_length_380_cov_36.509653:1-380 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 194, Coverage: 22, minDepth: 6 [pilon] Confirmed 274 of 380 bases (72.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8743_length_380_cov_36.509653:1-380 [pilon] Processing NODE_1891_length_1116_cov_1.359799:1-1116 [pilon] NODE_7644_length_435_cov_31.646497:1-435 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 193, Coverage: 23, minDepth: 6 [pilon] Confirmed 320 of 435 bases (73.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7644_length_435_cov_31.646497:1-435 [pilon] Processing NODE_14595_length_243_cov_9.442623:1-243 [pilon] NODE_5646_length_567_cov_26.015695:1-567 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 298, Coverage: 16, minDepth: 5 [pilon] Confirmed 370 of 567 bases (65.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5646_length_567_cov_26.015695:1-567 [pilon] Processing NODE_1272_length_1352_cov_26.177092:1-1352 [pilon] NODE_3326_length_811_cov_2.653623:1-811 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 50, Coverage: 8, minDepth: 5 [pilon] Confirmed 593 of 811 bases (73.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3326_length_811_cov_2.653623:1-811 [pilon] Processing NODE_9280_length_354_cov_25.678112:1-354 [pilon] NODE_6249_length_521_cov_7.112500:1-521 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 73, Coverage: 17, minDepth: 5 [pilon] Confirmed 450 of 521 bases (86.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6249_length_521_cov_7.112500:1-521 [pilon] Processing NODE_2845_length_903_cov_14.565217:1-903 [pilon] NODE_2218_length_1029_cov_22.005507:1-1029 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 447, Coverage: 40, minDepth: 10 [pilon] Confirmed 818 of 1029 bases (79.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2218_length_1029_cov_22.005507:1-1029 [pilon] Processing NODE_14513_length_243_cov_10.213115:1-243 [pilon] NODE_8081_length_414_cov_16.955631:1-414 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 129, Coverage: 13, minDepth: 5 [pilon] Confirmed 313 of 414 bases (75.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8081_length_414_cov_16.955631:1-414 [pilon] Processing NODE_5089_length_611_cov_9.297959:1-611 [pilon] NODE_2541_length_958_cov_49.393070:1-958 log: [pilon] frags shovill.bam: coverage 110 [pilon] Total Reads: 914, Coverage: 110, minDepth: 28 [pilon] Confirmed 800 of 958 bases (83.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2541_length_958_cov_49.393070:1-958 [pilon] Processing NODE_5245_length_597_cov_3.172269:1-597 [pilon] NODE_484_length_1925_cov_23.029933:1-1925 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 1023, Coverage: 49, minDepth: 12 [pilon] Confirmed 1599 of 1925 bases (83.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_484_length_1925_cov_23.029933:1-1925 [pilon] Processing NODE_14308_length_243_cov_11.786885:1-243 [pilon] NODE_13109_length_243_cov_21.868852:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 62, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13109_length_243_cov_21.868852:1-243 [pilon] Processing NODE_11503_length_264_cov_6.083916:1-264 [pilon] NODE_10138_length_320_cov_30.582915:1-320 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 130, Coverage: 9, minDepth: 5 [pilon] Confirmed 158 of 320 bases (49.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10138_length_320_cov_30.582915:1-320 [pilon] Processing NODE_9966_length_327_cov_18.796117:1-327 [pilon] NODE_11431_length_267_cov_5.732877:1-267 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11431_length_267_cov_5.732877:1-267 [pilon] Processing NODE_10308_length_312_cov_34.298429:1-312 [pilon] NODE_8215_length_408_cov_1.149826:1-408 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 53 of 408 bases (12.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8215_length_408_cov_1.149826:1-408 [pilon] Processing NODE_9623_length_341_cov_5.572727:1-341 [pilon] NODE_6731_length_488_cov_12.678474:1-488 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 167, Coverage: 21, minDepth: 5 [pilon] Confirmed 345 of 488 bases (70.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6731_length_488_cov_12.678474:1-488 [pilon] Processing NODE_5809_length_555_cov_0.797235:1-555 [pilon] NODE_8819_length_375_cov_53.877953:1-375 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 312, Coverage: 59, minDepth: 15 [pilon] Confirmed 314 of 375 bases (83.73%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8819_length_375_cov_53.877953:1-375 [pilon] Processing NODE_1111_length_1436_cov_9.514829:1-1436 [pilon] NODE_15217_length_150_cov_9.620690:1-150 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 150 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15217_length_150_cov_9.620690:1-150 [pilon] Processing NODE_10185_length_318_cov_13.954315:1-318 [pilon] NODE_9280_length_354_cov_25.678112:1-354 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 136, Coverage: 2, minDepth: 5 [pilon] Confirmed 105 of 354 bases (29.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9280_length_354_cov_25.678112:1-354 [pilon] Processing NODE_12601_length_243_cov_27.565574:1-243 [pilon] NODE_1891_length_1116_cov_1.359799:1-1116 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 45, Coverage: 5, minDepth: 5 [pilon] Confirmed 475 of 1116 bases (42.56%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1891_length_1116_cov_1.359799:1-1116 [pilon] Processing NODE_7589_length_438_cov_20.719243:1-438 [pilon] NODE_3297_length_815_cov_21.345821:1-815 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 358, Coverage: 42, minDepth: 11 [pilon] Confirmed 584 of 815 bases (71.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3297_length_815_cov_21.345821:1-815 [pilon] Processing NODE_6302_length_518_cov_1.173804:1-518 [pilon] NODE_14595_length_243_cov_9.442623:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14595_length_243_cov_9.442623:1-243 [pilon] Processing NODE_14991_length_243_cov_5.549180:1-243 [pilon] NODE_1272_length_1352_cov_26.177092:1-1352 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 787, Coverage: 50, minDepth: 13 [pilon] Confirmed 1173 of 1352 bases (86.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1272_length_1352_cov_26.177092:1-1352 [pilon] Processing NODE_10731_length_297_cov_7.698864:1-297 [pilon] NODE_10602_length_300_cov_36.726257:1-300 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 152, Coverage: 15, minDepth: 5 [pilon] Confirmed 250 of 300 bases (83.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10602_length_300_cov_36.726257:1-300 [pilon] Processing NODE_635_length_1767_cov_13.838396:1-1767 [pilon] NODE_7986_length_419_cov_1.607383:1-419 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 9, Coverage: 2, minDepth: 5 [pilon] Confirmed 68 of 419 bases (16.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7986_length_419_cov_1.607383:1-419 [pilon] Processing NODE_11947_length_247_cov_27.095238:1-247 [pilon] NODE_14308_length_243_cov_11.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 19, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14308_length_243_cov_11.786885:1-243 [pilon] Processing NODE_12870_length_243_cov_24.311475:1-243 [pilon] NODE_5245_length_597_cov_3.172269:1-597 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 41, Coverage: 9, minDepth: 5 [pilon] Confirmed 438 of 597 bases (73.37%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5245_length_597_cov_3.172269:1-597 [pilon] Processing NODE_13691_length_243_cov_16.475410:1-243 [pilon] NODE_2845_length_903_cov_14.565217:1-903 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 264, Coverage: 13, minDepth: 5 [pilon] Confirmed 646 of 903 bases (71.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2845_length_903_cov_14.565217:1-903 [pilon] Processing NODE_1766_length_1157_cov_4.001931:1-1157 [pilon] NODE_5089_length_611_cov_9.297959:1-611 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 104, Coverage: 8, minDepth: 5 [pilon] Confirmed 454 of 611 bases (74.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5089_length_611_cov_9.297959:1-611 [pilon] NODE_7796_length_428_cov_0.745928:1-428 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 34 of 428 bases (7.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7796_length_428_cov_0.745928:1-428 [pilon] Processing NODE_10656_length_300_cov_7.027933:1-300 [pilon] Processing NODE_14871_length_243_cov_6.983607:1-243 [pilon] NODE_11503_length_264_cov_6.083916:1-264 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11503_length_264_cov_6.083916:1-264 [pilon] Processing NODE_3523_length_780_cov_21.614568:1-780 [pilon] NODE_10308_length_312_cov_34.298429:1-312 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 134, Coverage: 5, minDepth: 5 [pilon] Confirmed 156 of 312 bases (50.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10308_length_312_cov_34.298429:1-312 [pilon] Processing NODE_5107_length_609_cov_40.069672:1-609 [pilon] NODE_14513_length_243_cov_10.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14513_length_243_cov_10.213115:1-243 [pilon] Processing NODE_2443_length_979_cov_44.684149:1-979 [pilon] NODE_9623_length_341_cov_5.572727:1-341 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 58, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 341 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9623_length_341_cov_5.572727:1-341 [pilon] Processing NODE_11822_length_252_cov_16.625954:1-252 [pilon] NODE_1111_length_1436_cov_9.514829:1-1436 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 373, Coverage: 28, minDepth: 7 [pilon] Confirmed 1222 of 1436 bases (85.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1111_length_1436_cov_9.514829:1-1436 [pilon] Processing NODE_14899_length_243_cov_6.721311:1-243 [pilon] NODE_12601_length_243_cov_27.565574:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12601_length_243_cov_27.565574:1-243 [pilon] Processing NODE_6617_length_496_cov_8.554667:1-496 [pilon] NODE_9966_length_327_cov_18.796117:1-327 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 79, Coverage: 7, minDepth: 5 [pilon] Confirmed 194 of 327 bases (59.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9966_length_327_cov_18.796117:1-327 [pilon] Processing NODE_4184_length_695_cov_26.433798:1-695 [pilon] NODE_7589_length_438_cov_20.719243:1-438 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 160, Coverage: 20, minDepth: 5 [pilon] Confirmed 328 of 438 bases (74.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7589_length_438_cov_20.719243:1-438 [pilon] Processing NODE_4634_length_649_cov_5.541667:1-649 [pilon] NODE_10731_length_297_cov_7.698864:1-297 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10731_length_297_cov_7.698864:1-297 [pilon] Processing NODE_3896_length_729_cov_1.547697:1-729 [pilon] NODE_14991_length_243_cov_5.549180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14991_length_243_cov_5.549180:1-243 [pilon] Processing NODE_466_length_1954_cov_2.146754:1-1954 [pilon] NODE_12870_length_243_cov_24.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12870_length_243_cov_24.311475:1-243 [pilon] Processing NODE_8087_length_414_cov_13.713311:1-414 [pilon] NODE_1766_length_1157_cov_4.001931:1-1157 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 102, Coverage: 11, minDepth: 5 [pilon] Confirmed 875 of 1157 bases (75.63%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1766_length_1157_cov_4.001931:1-1157 [pilon] Processing NODE_14130_length_243_cov_13.286885:1-243 [pilon] NODE_5809_length_555_cov_0.797235:1-555 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 11, Coverage: 2, minDepth: 5 [pilon] Confirmed 45 of 555 bases (8.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5809_length_555_cov_0.797235:1-555 [pilon] Processing NODE_14995_length_243_cov_5.475410:1-243 [pilon] NODE_10656_length_300_cov_7.027933:1-300 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 300 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10656_length_300_cov_7.027933:1-300 [pilon] NODE_13691_length_243_cov_16.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13691_length_243_cov_16.475410:1-243 [pilon] Processing NODE_5580_length_572_cov_17.667406:1-572 [pilon] NODE_10185_length_318_cov_13.954315:1-318 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 57, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 318 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10185_length_318_cov_13.954315:1-318 [pilon] Processing NODE_10724_length_297_cov_11.329545:1-297 [pilon] NODE_6302_length_518_cov_1.173804:1-518 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 183 of 518 bases (35.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6302_length_518_cov_1.173804:1-518 [pilon] Processing NODE_1581_length_1225_cov_42.170290:1-1225 [pilon] NODE_11947_length_247_cov_27.095238:1-247 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 73, Coverage: 7, minDepth: 5 [pilon] Confirmed 177 of 247 bases (71.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11947_length_247_cov_27.095238:1-247 [pilon] Processing NODE_11734_length_255_cov_21.544776:1-255 [pilon] NODE_5107_length_609_cov_40.069672:1-609 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 502, Coverage: 32, minDepth: 8 [pilon] Confirmed 379 of 609 bases (62.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5107_length_609_cov_40.069672:1-609 [pilon] Processing NODE_8700_length_382_cov_20.088123:1-382 [pilon] NODE_3523_length_780_cov_21.614568:1-780 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 329, Coverage: 39, minDepth: 10 [pilon] Confirmed 665 of 780 bases (85.26%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3523_length_780_cov_21.614568:1-780 [pilon] Processing NODE_9076_length_363_cov_14.780992:1-363 [pilon] NODE_635_length_1767_cov_13.838396:1-1767 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 562, Coverage: 36, minDepth: 9 [pilon] Confirmed 1451 of 1767 bases (82.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_635_length_1767_cov_13.838396:1-1767 [pilon] Processing NODE_10213_length_316_cov_25.676923:1-316 [pilon] NODE_11822_length_252_cov_16.625954:1-252 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 49, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11822_length_252_cov_16.625954:1-252 [pilon] Processing NODE_13013_length_243_cov_22.770492:1-243 [pilon] NODE_14899_length_243_cov_6.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14899_length_243_cov_6.721311:1-243 [pilon] Processing NODE_10467_length_306_cov_11.864865:1-306 [pilon] NODE_14871_length_243_cov_6.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14871_length_243_cov_6.983607:1-243 [pilon] Processing NODE_9537_length_345_cov_10.718750:1-345 [pilon] NODE_6617_length_496_cov_8.554667:1-496 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 79, Coverage: 12, minDepth: 5 [pilon] Confirmed 281 of 496 bases (56.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6617_length_496_cov_8.554667:1-496 [pilon] Processing NODE_7104_length_465_cov_12.159884:1-465 [pilon] NODE_4634_length_649_cov_5.541667:1-649 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 69, Coverage: 12, minDepth: 5 [pilon] Confirmed 530 of 649 bases (81.66%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4634_length_649_cov_5.541667:1-649 [pilon] Processing NODE_11760_length_255_cov_13.858209:1-255 [pilon] NODE_3896_length_729_cov_1.547697:1-729 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 34, Coverage: 6, minDepth: 5 [pilon] Confirmed 463 of 729 bases (63.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3896_length_729_cov_1.547697:1-729 [pilon] Processing NODE_2_length_9632_cov_18.016928:1-9632 [pilon] NODE_2443_length_979_cov_44.684149:1-979 log: [pilon] frags shovill.bam: coverage 94 [pilon] Total Reads: 837, Coverage: 94, minDepth: 24 [pilon] Confirmed 857 of 979 bases (87.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2443_length_979_cov_44.684149:1-979 [pilon] Processing NODE_11898_length_249_cov_19.445312:1-249 [pilon] NODE_8087_length_414_cov_13.713311:1-414 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 96, Coverage: 6, minDepth: 5 [pilon] Confirmed 245 of 414 bases (59.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8087_length_414_cov_13.713311:1-414 [pilon] Processing NODE_10411_length_308_cov_23.561497:1-308 [pilon] NODE_466_length_1954_cov_2.146754:1-1954 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 110, Coverage: 7, minDepth: 5 [pilon] Confirmed 984 of 1954 bases (50.36%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_466_length_1954_cov_2.146754:1-1954 [pilon] Processing NODE_10770_length_294_cov_21.878613:1-294 [pilon] NODE_5580_length_572_cov_17.667406:1-572 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 174, Coverage: 29, minDepth: 7 [pilon] Confirmed 390 of 572 bases (68.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5580_length_572_cov_17.667406:1-572 [pilon] Processing NODE_11333_length_270_cov_18.818792:1-270 [pilon] NODE_4184_length_695_cov_26.433798:1-695 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 358, Coverage: 48, minDepth: 12 [pilon] Confirmed 501 of 695 bases (72.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4184_length_695_cov_26.433798:1-695 [pilon] Processing NODE_6932_length_475_cov_56.957627:1-475 [pilon] NODE_14130_length_243_cov_13.286885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14130_length_243_cov_13.286885:1-243 [pilon] Processing NODE_14281_length_243_cov_12.000000:1-243 [pilon] NODE_11734_length_255_cov_21.544776:1-255 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 62, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11734_length_255_cov_21.544776:1-255 [pilon] Processing NODE_4566_length_656_cov_12.351402:1-656 [pilon] NODE_8700_length_382_cov_20.088123:1-382 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 117, Coverage: 9, minDepth: 5 [pilon] Confirmed 218 of 382 bases (57.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8700_length_382_cov_20.088123:1-382 [pilon] Processing NODE_6874_length_479_cov_26.312849:1-479 [pilon] NODE_14995_length_243_cov_5.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14995_length_243_cov_5.475410:1-243 [pilon] Processing NODE_11326_length_270_cov_22.429530:1-270 [pilon] NODE_13013_length_243_cov_22.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13013_length_243_cov_22.770492:1-243 [pilon] Processing NODE_1434_length_1286_cov_13.108155:1-1286 [pilon] NODE_10467_length_306_cov_11.864865:1-306 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 39, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 306 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10467_length_306_cov_11.864865:1-306 [pilon] Processing NODE_11394_length_267_cov_22.184932:1-267 [pilon] NODE_10724_length_297_cov_11.329545:1-297 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 48, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10724_length_297_cov_11.329545:1-297 [pilon] Processing NODE_2468_length_974_cov_1.376319:1-974 [pilon] NODE_9537_length_345_cov_10.718750:1-345 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 62, Coverage: 7, minDepth: 5 [pilon] Confirmed 225 of 345 bases (65.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9537_length_345_cov_10.718750:1-345 [pilon] Processing NODE_9835_length_333_cov_12.943396:1-333 [pilon] NODE_11760_length_255_cov_13.858209:1-255 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 38, Coverage: 3, minDepth: 5 [pilon] Confirmed 36 of 255 bases (14.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11760_length_255_cov_13.858209:1-255 [pilon] Processing NODE_6611_length_496_cov_44.538667:1-496 [pilon] NODE_7104_length_465_cov_12.159884:1-465 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 102, Coverage: 4, minDepth: 5 [pilon] Confirmed 174 of 465 bases (37.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7104_length_465_cov_12.159884:1-465 [pilon] Processing NODE_4117_length_703_cov_17.814433:1-703 [pilon] NODE_9076_length_363_cov_14.780992:1-363 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 71, Coverage: 8, minDepth: 5 [pilon] Confirmed 267 of 363 bases (73.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9076_length_363_cov_14.780992:1-363 [pilon] Processing NODE_13674_length_243_cov_16.770492:1-243 [pilon] NODE_10213_length_316_cov_25.676923:1-316 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 101, Coverage: 2, minDepth: 5 [pilon] Confirmed 63 of 316 bases (19.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10213_length_316_cov_25.676923:1-316 [pilon] Processing NODE_3313_length_813_cov_2.476879:1-813 [pilon] NODE_1581_length_1225_cov_42.170290:1-1225 log: [pilon] frags shovill.bam: coverage 78 [pilon] Total Reads: 1146, Coverage: 78, minDepth: 20 [pilon] Confirmed 1045 of 1225 bases (85.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1581_length_1225_cov_42.170290:1-1225 [pilon] Processing NODE_8156_length_411_cov_1.537931:1-411 [pilon] NODE_10411_length_308_cov_23.561497:1-308 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 96, Coverage: 4, minDepth: 5 [pilon] Confirmed 136 of 308 bases (44.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10411_length_308_cov_23.561497:1-308 [pilon] Processing NODE_7929_length_421_cov_31.356667:1-421 [pilon] NODE_10770_length_294_cov_21.878613:1-294 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 82, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 294 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10770_length_294_cov_21.878613:1-294 [pilon] Processing NODE_13979_length_243_cov_14.278689:1-243 [pilon] NODE_11333_length_270_cov_18.818792:1-270 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 62, Coverage: 5, minDepth: 5 [pilon] Confirmed 159 of 270 bases (58.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11333_length_270_cov_18.818792:1-270 [pilon] Processing NODE_11764_length_255_cov_12.164179:1-255 [pilon] NODE_2_length_9632_cov_18.016928:1-9632 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 3946, Coverage: 52, minDepth: 13 [pilon] Confirmed 9083 of 9632 bases (94.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2_length_9632_cov_18.016928:1-9632 [pilon] Processing NODE_8096_length_414_cov_0.938567:1-414 [pilon] NODE_11898_length_249_cov_19.445312:1-249 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 51, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11898_length_249_cov_19.445312:1-249 [pilon] Processing NODE_12526_length_243_cov_28.729508:1-243 [pilon] NODE_6874_length_479_cov_26.312849:1-479 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 232, Coverage: 39, minDepth: 10 [pilon] Confirmed 411 of 479 bases (85.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6874_length_479_cov_26.312849:1-479 [pilon] Processing NODE_13997_length_243_cov_14.213115:1-243 [pilon] NODE_6932_length_475_cov_56.957627:1-475 log: [pilon] frags shovill.bam: coverage 85 [pilon] Total Reads: 442, Coverage: 85, minDepth: 21 [pilon] Confirmed 373 of 475 bases (78.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6932_length_475_cov_56.957627:1-475 [pilon] Processing NODE_8893_length_372_cov_19.438247:1-372 [pilon] NODE_4566_length_656_cov_12.351402:1-656 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 174, Coverage: 24, minDepth: 6 [pilon] Confirmed 553 of 656 bases (84.30%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4566_length_656_cov_12.351402:1-656 [pilon] Processing NODE_14468_length_243_cov_10.516393:1-243 [pilon] NODE_1434_length_1286_cov_13.108155:1-1286 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 411, Coverage: 27, minDepth: 7 [pilon] Confirmed 833 of 1286 bases (64.77%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1434_length_1286_cov_13.108155:1-1286 [pilon] Processing NODE_12476_length_243_cov_29.516393:1-243 [pilon] NODE_4117_length_703_cov_17.814433:1-703 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 267, Coverage: 22, minDepth: 6 [pilon] Confirmed 594 of 703 bases (84.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4117_length_703_cov_17.814433:1-703 [pilon] Processing NODE_14647_length_243_cov_9.049180:1-243 [pilon] NODE_6611_length_496_cov_44.538667:1-496 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 408, Coverage: 66, minDepth: 17 [pilon] Confirmed 418 of 496 bases (84.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6611_length_496_cov_44.538667:1-496 [pilon] Processing NODE_6280_length_519_cov_15.884422:1-519 [pilon] NODE_13674_length_243_cov_16.770492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13674_length_243_cov_16.770492:1-243 [pilon] NODE_2468_length_974_cov_1.376319:1-974 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 28, Coverage: 3, minDepth: 5 [pilon] Confirmed 271 of 974 bases (27.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2468_length_974_cov_1.376319:1-974 [pilon] Processing NODE_14349_length_243_cov_11.475410:1-243 [pilon] Processing NODE_8154_length_411_cov_3.582759:1-411 [pilon] NODE_14281_length_243_cov_12.000000:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14281_length_243_cov_12.000000:1-243 [pilon] Processing NODE_2782_length_912_cov_1.534766:1-912 [pilon] NODE_7929_length_421_cov_31.356667:1-421 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 224, Coverage: 31, minDepth: 8 [pilon] Confirmed 357 of 421 bases (84.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7929_length_421_cov_31.356667:1-421 [pilon] Processing NODE_11569_length_261_cov_24.114286:1-261 [pilon] NODE_11326_length_270_cov_22.429530:1-270 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 64, Coverage: 4, minDepth: 5 [pilon] Confirmed 84 of 270 bases (31.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11326_length_270_cov_22.429530:1-270 [pilon] Processing NODE_8892_length_372_cov_19.752988:1-372 [pilon] NODE_13979_length_243_cov_14.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13979_length_243_cov_14.278689:1-243 [pilon] Processing NODE_15223_length_144_cov_6.652174:1-144 [pilon] NODE_11764_length_255_cov_12.164179:1-255 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 36, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 255 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11764_length_255_cov_12.164179:1-255 [pilon] Processing NODE_6108_length_531_cov_18.800000:1-531 [pilon] NODE_11394_length_267_cov_22.184932:1-267 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 71, Coverage: 9, minDepth: 5 [pilon] Confirmed 219 of 267 bases (82.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11394_length_267_cov_22.184932:1-267 [pilon] Processing NODE_11826_length_252_cov_15.007634:1-252 [pilon] NODE_9835_length_333_cov_12.943396:1-333 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 68, Coverage: 6, minDepth: 5 [pilon] Confirmed 181 of 333 bases (54.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9835_length_333_cov_12.943396:1-333 [pilon] Processing NODE_731_length_1684_cov_21.715931:1-1684 [pilon] NODE_8096_length_414_cov_0.938567:1-414 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 12, Coverage: 3, minDepth: 5 [pilon] Confirmed 72 of 414 bases (17.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8096_length_414_cov_0.938567:1-414 [pilon] Processing NODE_2243_length_1022_cov_2.834628:1-1022 [pilon] NODE_3313_length_813_cov_2.476879:1-813 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 63, Coverage: 10, minDepth: 5 [pilon] Confirmed 600 of 813 bases (73.80%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3313_length_813_cov_2.476879:1-813 [pilon] Processing NODE_630_length_1771_cov_22.966061:1-1771 [pilon] NODE_12526_length_243_cov_28.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 63, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12526_length_243_cov_28.729508:1-243 [pilon] Processing NODE_1403_length_1297_cov_14.063776:1-1297 [pilon] NODE_8156_length_411_cov_1.537931:1-411 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 18, Coverage: 6, minDepth: 5 [pilon] Confirmed 269 of 411 bases (65.45%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8156_length_411_cov_1.537931:1-411 [pilon] Processing NODE_176_length_2578_cov_39.774115:1-2578 [pilon] NODE_14468_length_243_cov_10.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14468_length_243_cov_10.516393:1-243 [pilon] Processing NODE_4812_length_633_cov_39.015625:1-633 [pilon] NODE_8893_length_372_cov_19.438247:1-372 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 106, Coverage: 15, minDepth: 5 [pilon] Confirmed 254 of 372 bases (68.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8893_length_372_cov_19.438247:1-372 [pilon] Processing NODE_12126_length_243_cov_42.377049:1-243 [pilon] NODE_13997_length_243_cov_14.213115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13997_length_243_cov_14.213115:1-243 [pilon] Processing NODE_5370_length_587_cov_1.135193:1-587 [pilon] NODE_12476_length_243_cov_29.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 52, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12476_length_243_cov_29.516393:1-243 [pilon] Processing NODE_6498_length_504_cov_7.934726:1-504 [pilon] NODE_14647_length_243_cov_9.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 4, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14647_length_243_cov_9.049180:1-243 [pilon] Processing NODE_6914_length_477_cov_2.536517:1-477 [pilon] NODE_11569_length_261_cov_24.114286:1-261 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 73, Coverage: 10, minDepth: 5 [pilon] Confirmed 198 of 261 bases (75.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11569_length_261_cov_24.114286:1-261 [pilon] Processing NODE_8808_length_377_cov_9.933594:1-377 [pilon] NODE_15223_length_144_cov_6.652174:1-144 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 144 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15223_length_144_cov_6.652174:1-144 [pilon] Processing NODE_10684_length_299_cov_2.539326:1-299 [pilon] NODE_8154_length_411_cov_3.582759:1-411 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 22, Coverage: 6, minDepth: 5 [pilon] Confirmed 297 of 411 bases (72.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8154_length_411_cov_3.582759:1-411 [pilon] Processing NODE_12500_length_243_cov_29.114754:1-243 [pilon] NODE_6108_length_531_cov_18.800000:1-531 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 177, Coverage: 26, minDepth: 7 [pilon] Confirmed 479 of 531 bases (90.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6108_length_531_cov_18.800000:1-531 [pilon] Processing NODE_10284_length_314_cov_20.740933:1-314 [pilon] NODE_8892_length_372_cov_19.752988:1-372 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 102, Coverage: 19, minDepth: 5 [pilon] Confirmed 300 of 372 bases (80.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8892_length_372_cov_19.752988:1-372 [pilon] Processing NODE_11804_length_252_cov_27.732824:1-252 [pilon] NODE_2243_length_1022_cov_2.834628:1-1022 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 71, Coverage: 9, minDepth: 5 [pilon] Confirmed 701 of 1022 bases (68.59%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2243_length_1022_cov_2.834628:1-1022 [pilon] Processing NODE_5937_length_545_cov_23.115566:1-545 [pilon] NODE_11826_length_252_cov_15.007634:1-252 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 43, Coverage: 3, minDepth: 5 [pilon] Confirmed 57 of 252 bases (22.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11826_length_252_cov_15.007634:1-252 [pilon] Processing NODE_12026_length_246_cov_11.352000:1-246 [pilon] NODE_2782_length_912_cov_1.534766:1-912 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 49, Coverage: 7, minDepth: 5 [pilon] Confirmed 620 of 912 bases (67.98%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2782_length_912_cov_1.534766:1-912 [pilon] Processing NODE_11538_length_262_cov_26.234043:1-262 [pilon] NODE_6280_length_519_cov_15.884422:1-519 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 142, Coverage: 22, minDepth: 6 [pilon] Confirmed 400 of 519 bases (77.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6280_length_519_cov_15.884422:1-519 [pilon] Processing NODE_15196_length_161_cov_5.275000:1-161 [pilon] NODE_1403_length_1297_cov_14.063776:1-1297 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 432, Coverage: 26, minDepth: 7 [pilon] Confirmed 935 of 1297 bases (72.09%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1403_length_1297_cov_14.063776:1-1297 [pilon] Processing NODE_13848_length_243_cov_15.303279:1-243 [pilon] NODE_6498_length_504_cov_7.934726:1-504 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 99, Coverage: 10, minDepth: 5 [pilon] Confirmed 383 of 504 bases (75.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6498_length_504_cov_7.934726:1-504 [pilon] Processing NODE_12032_length_246_cov_10.360000:1-246 [pilon] NODE_5370_length_587_cov_1.135193:1-587 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 587 bases (22.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5370_length_587_cov_1.135193:1-587 [pilon] Processing NODE_2124_length_1052_cov_36.515575:1-1052 [pilon] NODE_14349_length_243_cov_11.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14349_length_243_cov_11.475410:1-243 [pilon] Processing NODE_4404_length_671_cov_9.400000:1-671 [pilon] NODE_12126_length_243_cov_42.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 71, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12126_length_243_cov_42.377049:1-243 [pilon] Processing NODE_10433_length_307_cov_10.870968:1-307 [pilon] NODE_4812_length_633_cov_39.015625:1-633 log: [pilon] frags shovill.bam: coverage 65 [pilon] Total Reads: 458, Coverage: 65, minDepth: 16 [pilon] Confirmed 593 of 633 bases (93.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4812_length_633_cov_39.015625:1-633 [pilon] Processing NODE_14116_length_243_cov_13.377049:1-243 [pilon] NODE_6914_length_477_cov_2.536517:1-477 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 24, Coverage: 7, minDepth: 5 [pilon] Confirmed 302 of 477 bases (63.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6914_length_477_cov_2.536517:1-477 [pilon] Processing NODE_9638_length_339_cov_68.660550:1-339 [pilon] NODE_731_length_1684_cov_21.715931:1-1684 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 812, Coverage: 50, minDepth: 13 [pilon] Confirmed 1569 of 1684 bases (93.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_731_length_1684_cov_21.715931:1-1684 [pilon] Processing NODE_11491_length_264_cov_13.300699:1-264 [pilon] NODE_8808_length_377_cov_9.933594:1-377 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 56, Coverage: 4, minDepth: 5 [pilon] Confirmed 158 of 377 bases (41.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8808_length_377_cov_9.933594:1-377 [pilon] Processing NODE_8256_length_406_cov_9.389474:1-406 [pilon] NODE_10684_length_299_cov_2.539326:1-299 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 299 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10684_length_299_cov_2.539326:1-299 [pilon] Processing NODE_11211_length_276_cov_7.070968:1-276 [pilon] NODE_12500_length_243_cov_29.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12500_length_243_cov_29.114754:1-243 [pilon] Processing NODE_9971_length_327_cov_14.645631:1-327 [pilon] NODE_10284_length_314_cov_20.740933:1-314 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 89, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 314 bases (41.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10284_length_314_cov_20.740933:1-314 [pilon] Processing NODE_6652_length_493_cov_35.516129:1-493 [pilon] NODE_630_length_1771_cov_22.966061:1-1771 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 919, Coverage: 39, minDepth: 10 [pilon] Confirmed 1676 of 1771 bases (94.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_630_length_1771_cov_22.966061:1-1771 [pilon] Processing NODE_3786_length_742_cov_19.536232:1-742 [pilon] NODE_176_length_2578_cov_39.774115:1-2578 log: [pilon] frags shovill.bam: coverage 67 [pilon] Total Reads: 2397, Coverage: 67, minDepth: 17 [pilon] Confirmed 2360 of 2578 bases (91.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_176_length_2578_cov_39.774115:1-2578 [pilon] Processing NODE_5067_length_613_cov_19.778455:1-613 [pilon] NODE_11804_length_252_cov_27.732824:1-252 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 74, Coverage: 6, minDepth: 5 [pilon] Confirmed 175 of 252 bases (69.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11804_length_252_cov_27.732824:1-252 [pilon] Processing NODE_6226_length_522_cov_32.364090:1-522 [pilon] NODE_13848_length_243_cov_15.303279:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13848_length_243_cov_15.303279:1-243 [pilon] NODE_12026_length_246_cov_11.352000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 32, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12026_length_246_cov_11.352000:1-246 [pilon] Processing NODE_13665_length_243_cov_16.827869:1-243 [pilon] Processing NODE_11423_length_267_cov_9.431507:1-267 [pilon] NODE_5937_length_545_cov_23.115566:1-545 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 252, Coverage: 27, minDepth: 7 [pilon] Confirmed 504 of 545 bases (92.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5937_length_545_cov_23.115566:1-545 [pilon] Processing NODE_3833_length_736_cov_27.806504:1-736 [pilon] NODE_15196_length_161_cov_5.275000:1-161 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 161 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15196_length_161_cov_5.275000:1-161 [pilon] Processing NODE_13534_length_243_cov_18.040984:1-243 [pilon] NODE_12032_length_246_cov_10.360000:1-246 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 27, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12032_length_246_cov_10.360000:1-246 [pilon] Processing NODE_2813_length_907_cov_2.685751:1-907 [pilon] NODE_2124_length_1052_cov_36.515575:1-1052 log: [pilon] frags shovill.bam: coverage 89 [pilon] Total Reads: 957, Coverage: 89, minDepth: 22 [pilon] Confirmed 869 of 1052 bases (82.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2124_length_1052_cov_36.515575:1-1052 [pilon] Processing NODE_3780_length_743_cov_14.538585:1-743 [pilon] NODE_14116_length_243_cov_13.377049:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14116_length_243_cov_13.377049:1-243 [pilon] Processing NODE_12214_length_243_cov_36.155738:1-243 [pilon] NODE_9638_length_339_cov_68.660550:1-339 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 340, Coverage: 56, minDepth: 14 [pilon] Confirmed 306 of 339 bases (90.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9638_length_339_cov_68.660550:1-339 [pilon] Processing NODE_2675_length_933_cov_2.184729:1-933 [pilon] NODE_11538_length_262_cov_26.234043:1-262 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 83, Coverage: 11, minDepth: 5 [pilon] Confirmed 218 of 262 bases (83.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11538_length_262_cov_26.234043:1-262 [pilon] Processing NODE_12345_length_243_cov_32.262295:1-243 [pilon] NODE_8256_length_406_cov_9.389474:1-406 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 62, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 406 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8256_length_406_cov_9.389474:1-406 [pilon] Processing NODE_6934_length_475_cov_29.234463:1-475 [pilon] NODE_11211_length_276_cov_7.070968:1-276 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 28, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 276 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11211_length_276_cov_7.070968:1-276 [pilon] Processing NODE_15184_length_167_cov_8.478261:1-167 [pilon] NODE_9971_length_327_cov_14.645631:1-327 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 69, Coverage: 2, minDepth: 5 [pilon] Confirmed 94 of 327 bases (28.75%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9971_length_327_cov_14.645631:1-327 [pilon] Processing NODE_2360_length_999_cov_2.839408:1-999 [pilon] NODE_6652_length_493_cov_35.516129:1-493 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 288, Coverage: 59, minDepth: 15 [pilon] Confirmed 413 of 493 bases (83.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6652_length_493_cov_35.516129:1-493 [pilon] Processing NODE_12770_length_243_cov_25.360656:1-243 [pilon] NODE_10433_length_307_cov_10.870968:1-307 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 51, Coverage: 9, minDepth: 5 [pilon] Confirmed 245 of 307 bases (79.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10433_length_307_cov_10.870968:1-307 [pilon] Processing NODE_4794_length_635_cov_2.535019:1-635 [pilon] NODE_4404_length_671_cov_9.400000:1-671 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 129, Coverage: 20, minDepth: 5 [pilon] Confirmed 589 of 671 bases (87.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4404_length_671_cov_9.400000:1-671 [pilon] Processing NODE_9991_length_326_cov_18.278049:1-326 [pilon] NODE_11491_length_264_cov_13.300699:1-264 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 264 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11491_length_264_cov_13.300699:1-264 [pilon] Processing NODE_11573_length_261_cov_22.350000:1-261 [pilon] NODE_2813_length_907_cov_2.685751:1-907 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 76, Coverage: 10, minDepth: 5 [pilon] Confirmed 716 of 907 bases (78.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2813_length_907_cov_2.685751:1-907 [pilon] Processing NODE_14677_length_243_cov_8.762295:1-243 [pilon] NODE_13665_length_243_cov_16.827869:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13665_length_243_cov_16.827869:1-243 [pilon] Processing NODE_3305_length_814_cov_20.174603:1-814 [pilon] NODE_3833_length_736_cov_27.806504:1-736 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 387, Coverage: 37, minDepth: 9 [pilon] Confirmed 581 of 736 bases (78.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3833_length_736_cov_27.806504:1-736 [pilon] Processing NODE_15234_length_139_cov_40.611111:1-139 [pilon] NODE_13534_length_243_cov_18.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13534_length_243_cov_18.040984:1-243 [pilon] Processing NODE_9886_length_330_cov_24.971292:1-330 [pilon] NODE_3786_length_742_cov_19.536232:1-742 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 303, Coverage: 45, minDepth: 11 [pilon] Confirmed 579 of 742 bases (78.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3786_length_742_cov_19.536232:1-742 [pilon] Processing NODE_8621_length_387_cov_20.868421:1-387 [pilon] NODE_3780_length_743_cov_14.538585:1-743 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 255, Coverage: 26, minDepth: 7 [pilon] Confirmed 646 of 743 bases (86.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3780_length_743_cov_14.538585:1-743 [pilon] Processing NODE_12113_length_243_cov_45.393443:1-243 [pilon] NODE_2675_length_933_cov_2.184729:1-933 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 50, Coverage: 7, minDepth: 5 [pilon] Confirmed 578 of 933 bases (61.95%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2675_length_933_cov_2.184729:1-933 [pilon] Processing NODE_3867_length_732_cov_13.808511:1-732 [pilon] NODE_6226_length_522_cov_32.364090:1-522 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 293, Coverage: 43, minDepth: 11 [pilon] Confirmed 442 of 522 bases (84.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6226_length_522_cov_32.364090:1-522 [pilon] Processing NODE_12956_length_243_cov_23.385246:1-243 [pilon] NODE_5067_length_613_cov_19.778455:1-613 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 232, Coverage: 28, minDepth: 7 [pilon] Confirmed 464 of 613 bases (75.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5067_length_613_cov_19.778455:1-613 [pilon] Processing NODE_5489_length_578_cov_27.253829:1-578 [pilon] NODE_11423_length_267_cov_9.431507:1-267 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 267 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11423_length_267_cov_9.431507:1-267 [pilon] Processing NODE_15067_length_237_cov_27.155172:1-237 [pilon] NODE_12214_length_243_cov_36.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 68, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12214_length_243_cov_36.155738:1-243 [pilon] Processing NODE_8446_length_397_cov_11.920290:1-397 [pilon] NODE_15184_length_167_cov_8.478261:1-167 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 167 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15184_length_167_cov_8.478261:1-167 [pilon] Processing NODE_3702_length_754_cov_11.159558:1-754 [pilon] NODE_12770_length_243_cov_25.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 64, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12770_length_243_cov_25.360656:1-243 [pilon] Processing NODE_2337_length_1003_cov_12.130385:1-1003 [pilon] NODE_2360_length_999_cov_2.839408:1-999 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 75, Coverage: 9, minDepth: 5 [pilon] Confirmed 812 of 999 bases (81.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2360_length_999_cov_2.839408:1-999 [pilon] Processing NODE_8128_length_411_cov_35.789655:1-411 [pilon] NODE_12345_length_243_cov_32.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 85, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12345_length_243_cov_32.262295:1-243 [pilon] Processing NODE_10917_length_288_cov_13.724551:1-288 [pilon] NODE_6934_length_475_cov_29.234463:1-475 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 268, Coverage: 28, minDepth: 7 [pilon] Confirmed 322 of 475 bases (67.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6934_length_475_cov_29.234463:1-475 [pilon] Processing NODE_3746_length_748_cov_6.172249:1-748 [pilon] NODE_4794_length_635_cov_2.535019:1-635 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 39, Coverage: 8, minDepth: 5 [pilon] Confirmed 457 of 635 bases (71.97%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4794_length_635_cov_2.535019:1-635 [pilon] Processing NODE_8458_length_396_cov_16.818182:1-396 [pilon] NODE_15234_length_139_cov_40.611111:1-139 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 7, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 139 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15234_length_139_cov_40.611111:1-139 [pilon] Processing NODE_5224_length_599_cov_10.215481:1-599 [pilon] NODE_14677_length_243_cov_8.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14677_length_243_cov_8.762295:1-243 [pilon] Processing NODE_6998_length_471_cov_28.480000:1-471 [pilon] NODE_11573_length_261_cov_22.350000:1-261 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 66, Coverage: 6, minDepth: 5 [pilon] Confirmed 187 of 261 bases (71.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11573_length_261_cov_22.350000:1-261 [pilon] Processing NODE_9333_length_353_cov_20.400862:1-353 [pilon] NODE_3305_length_814_cov_20.174603:1-814 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 299, Coverage: 38, minDepth: 10 [pilon] Confirmed 693 of 814 bases (85.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3305_length_814_cov_20.174603:1-814 [pilon] Processing NODE_1336_length_1327_cov_19.399668:1-1327 [pilon] NODE_9991_length_326_cov_18.278049:1-326 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 93, Coverage: 18, minDepth: 5 [pilon] Confirmed 296 of 326 bases (90.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9991_length_326_cov_18.278049:1-326 [pilon] Processing NODE_8403_length_399_cov_22.870504:1-399 [pilon] NODE_12113_length_243_cov_45.393443:1-243 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 108, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12113_length_243_cov_45.393443:1-243 [pilon] Processing NODE_6329_length_515_cov_10.639594:1-515 [pilon] NODE_3867_length_732_cov_13.808511:1-732 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 204, Coverage: 34, minDepth: 9 [pilon] Confirmed 525 of 732 bases (71.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3867_length_732_cov_13.808511:1-732 [pilon] Processing NODE_7765_length_429_cov_13.782468:1-429 [pilon] NODE_3702_length_754_cov_11.159558:1-754 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 171, Coverage: 7, minDepth: 5 [pilon] Confirmed 474 of 754 bases (62.86%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3702_length_754_cov_11.159558:1-754 [pilon] Processing NODE_7632_length_436_cov_1.076190:1-436 [pilon] NODE_2337_length_1003_cov_12.130385:1-1003 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 256, Coverage: 22, minDepth: 6 [pilon] Confirmed 717 of 1003 bases (71.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2337_length_1003_cov_12.130385:1-1003 [pilon] Processing NODE_12323_length_243_cov_32.655738:1-243 [pilon] NODE_3746_length_748_cov_6.172249:1-748 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 111, Coverage: 5, minDepth: 5 [pilon] Confirmed 260 of 748 bases (34.76%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3746_length_748_cov_6.172249:1-748 [pilon] Processing NODE_7845_length_425_cov_11.434211:1-425 [pilon] NODE_9886_length_330_cov_24.971292:1-330 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 111, Coverage: 4, minDepth: 5 [pilon] Confirmed 137 of 330 bases (41.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9886_length_330_cov_24.971292:1-330 [pilon] Processing NODE_7700_length_432_cov_20.315113:1-432 [pilon] NODE_8128_length_411_cov_35.789655:1-411 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 262, Coverage: 14, minDepth: 5 [pilon] Confirmed 194 of 411 bases (47.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8128_length_411_cov_35.789655:1-411 [pilon] Processing NODE_15052_length_240_cov_19.277311:1-240 [pilon] NODE_15067_length_237_cov_27.155172:1-237 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 66, Coverage: 3, minDepth: 5 [pilon] Confirmed 85 of 237 bases (35.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15067_length_237_cov_27.155172:1-237 [pilon] Processing NODE_7955_length_420_cov_14.561873:1-420 [pilon] NODE_8621_length_387_cov_20.868421:1-387 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 116, Coverage: 15, minDepth: 5 [pilon] Confirmed 254 of 387 bases (65.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8621_length_387_cov_20.868421:1-387 [pilon] Processing NODE_1105_length_1438_cov_14.474563:1-1438 [pilon] NODE_12956_length_243_cov_23.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12956_length_243_cov_23.385246:1-243 [pilon] Processing NODE_3350_length_805_cov_62.719298:1-805 [pilon] NODE_10917_length_288_cov_13.724551:1-288 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 50, Coverage: 2, minDepth: 5 [pilon] Confirmed 62 of 288 bases (21.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10917_length_288_cov_13.724551:1-288 [pilon] Processing NODE_10540_length_303_cov_19.010989:1-303 [pilon] NODE_8458_length_396_cov_16.818182:1-396 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 103, Coverage: 23, minDepth: 6 [pilon] Confirmed 315 of 396 bases (79.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8458_length_396_cov_16.818182:1-396 [pilon] Processing NODE_3946_length_721_cov_20.825000:1-721 [pilon] NODE_6998_length_471_cov_28.480000:1-471 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 240, Coverage: 29, minDepth: 7 [pilon] Confirmed 304 of 471 bases (64.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6998_length_471_cov_28.480000:1-471 [pilon] Processing NODE_870_length_1583_cov_2.577975:1-1583 [pilon] NODE_8446_length_397_cov_11.920290:1-397 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 85, Coverage: 9, minDepth: 5 [pilon] Confirmed 222 of 397 bases (55.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8446_length_397_cov_11.920290:1-397 [pilon] NODE_5489_length_578_cov_27.253829:1-578 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 302, Coverage: 36, minDepth: 9 [pilon] Confirmed 306 of 578 bases (52.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5489_length_578_cov_27.253829:1-578 [pilon] Processing NODE_13054_length_243_cov_22.360656:1-243 [pilon] Processing NODE_5798_length_555_cov_16.900922:1-555 [pilon] NODE_9333_length_353_cov_20.400862:1-353 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 120, Coverage: 12, minDepth: 5 [pilon] Confirmed 314 of 353 bases (88.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9333_length_353_cov_20.400862:1-353 [pilon] Processing NODE_6904_length_477_cov_18.213483:1-477 [pilon] NODE_5224_length_599_cov_10.215481:1-599 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 110, Coverage: 22, minDepth: 6 [pilon] Confirmed 365 of 599 bases (60.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5224_length_599_cov_10.215481:1-599 [pilon] Processing NODE_8841_length_375_cov_14.641732:1-375 [pilon] NODE_6329_length_515_cov_10.639594:1-515 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 117, Coverage: 11, minDepth: 5 [pilon] Confirmed 337 of 515 bases (65.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6329_length_515_cov_10.639594:1-515 [pilon] Processing NODE_12060_length_245_cov_21.266129:1-245 [pilon] NODE_7765_length_429_cov_13.782468:1-429 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 100, Coverage: 15, minDepth: 5 [pilon] Confirmed 320 of 429 bases (74.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7765_length_429_cov_13.782468:1-429 [pilon] Processing NODE_1546_length_1242_cov_0.855486:1-1242 [pilon] NODE_1336_length_1327_cov_19.399668:1-1327 log: [pilon] frags shovill.bam: coverage 55 [pilon] Total Reads: 638, Coverage: 55, minDepth: 14 [pilon] Confirmed 972 of 1327 bases (73.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1336_length_1327_cov_19.399668:1-1327 [pilon] Processing NODE_546_length_1861_cov_5.450575:1-1861 [pilon] NODE_7632_length_436_cov_1.076190:1-436 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 2 of 436 bases (0.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7632_length_436_cov_1.076190:1-436 [pilon] NODE_12323_length_243_cov_32.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 67, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12323_length_243_cov_32.655738:1-243 [pilon] Processing NODE_12587_length_243_cov_27.680328:1-243 [pilon] NODE_8403_length_399_cov_22.870504:1-399 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 150, Coverage: 16, minDepth: 5 [pilon] Confirmed 343 of 399 bases (85.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8403_length_399_cov_22.870504:1-399 [pilon] Processing NODE_8824_length_375_cov_27.929134:1-375 [pilon] NODE_7700_length_432_cov_20.315113:1-432 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 132, Coverage: 26, minDepth: 7 [pilon] Confirmed 323 of 432 bases (74.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7700_length_432_cov_20.315113:1-432 [pilon] Processing NODE_4460_length_665_cov_8.367647:1-665 [pilon] NODE_7845_length_425_cov_11.434211:1-425 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 62, Coverage: 2, minDepth: 5 [pilon] Confirmed 66 of 425 bases (15.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7845_length_425_cov_11.434211:1-425 [pilon] Processing NODE_8260_length_406_cov_1.687719:1-406 [pilon] NODE_870_length_1583_cov_2.577975:1-1583 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 103, Coverage: 8, minDepth: 5 [pilon] Confirmed 1103 of 1583 bases (69.68%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_3946_length_721_cov_20.825000:1-721 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 264, Coverage: 28, minDepth: 7 [pilon] Confirmed 576 of 721 bases (79.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3946_length_721_cov_20.825000:1-721 [pilon] Finished processing NODE_870_length_1583_cov_2.577975:1-1583 [pilon] Processing NODE_14592_length_243_cov_9.450820:1-243 [pilon] Processing NODE_1543_length_1243_cov_4.217469:1-1243 [pilon] NODE_3350_length_805_cov_62.719298:1-805 log: [pilon] frags shovill.bam: coverage 127 [pilon] Total Reads: 970, Coverage: 127, minDepth: 32 [pilon] Confirmed 727 of 805 bases (90.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3350_length_805_cov_62.719298:1-805 [pilon] Processing NODE_264_length_2301_cov_11.114220:1-2301 [pilon] NODE_6904_length_477_cov_18.213483:1-477 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 161, Coverage: 7, minDepth: 5 [pilon] Confirmed 270 of 477 bases (56.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6904_length_477_cov_18.213483:1-477 [pilon] Processing NODE_1250_length_1366_cov_22.224096:1-1366 [pilon] NODE_5798_length_555_cov_16.900922:1-555 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 171, Coverage: 31, minDepth: 8 [pilon] Confirmed 475 of 555 bases (85.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5798_length_555_cov_16.900922:1-555 [pilon] Processing NODE_11786_length_253_cov_22.113636:1-253 [pilon] NODE_15052_length_240_cov_19.277311:1-240 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 50, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 240 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15052_length_240_cov_19.277311:1-240 [pilon] Processing NODE_8813_length_376_cov_24.996078:1-376 [pilon] NODE_8841_length_375_cov_14.641732:1-375 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 74, Coverage: 4, minDepth: 5 [pilon] Confirmed 151 of 375 bases (40.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8841_length_375_cov_14.641732:1-375 [pilon] Processing NODE_384_length_2065_cov_24.959362:1-2065 [pilon] NODE_7955_length_420_cov_14.561873:1-420 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 114, Coverage: 7, minDepth: 5 [pilon] Confirmed 271 of 420 bases (64.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7955_length_420_cov_14.561873:1-420 [pilon] Processing NODE_12305_length_243_cov_33.049180:1-243 [pilon] NODE_1105_length_1438_cov_14.474563:1-1438 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 463, Coverage: 31, minDepth: 8 [pilon] Confirmed 1208 of 1438 bases (84.01%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1105_length_1438_cov_14.474563:1-1438 [pilon] Processing NODE_13302_length_243_cov_20.221311:1-243 [pilon] NODE_12060_length_245_cov_21.266129:1-245 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 60, Coverage: 4, minDepth: 5 [pilon] Confirmed 128 of 245 bases (52.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12060_length_245_cov_21.266129:1-245 [pilon] Processing NODE_12415_length_243_cov_30.647541:1-243 [pilon] NODE_1546_length_1242_cov_0.855486:1-1242 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 31, Coverage: 3, minDepth: 5 [pilon] Confirmed 261 of 1242 bases (21.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1546_length_1242_cov_0.855486:1-1242 [pilon] NODE_10540_length_303_cov_19.010989:1-303 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 65, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 303 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10540_length_303_cov_19.010989:1-303 [pilon] Processing NODE_9943_length_328_cov_5.212560:1-328 [pilon] NODE_546_length_1861_cov_5.450575:1-1861 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 297, Coverage: 14, minDepth: 5 [pilon] Confirmed 1549 of 1861 bases (83.23%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_546_length_1861_cov_5.450575:1-1861 [pilon] Processing NODE_14569_length_243_cov_9.762295:1-243 [pilon] NODE_13054_length_243_cov_22.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13054_length_243_cov_22.360656:1-243 [pilon] Processing NODE_11449_length_265_cov_9.430556:1-265 [pilon] NODE_8260_length_406_cov_1.687719:1-406 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 253 of 406 bases (62.32%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8260_length_406_cov_1.687719:1-406 [pilon] Processing NODE_14799_length_243_cov_7.721311:1-243 [pilon] NODE_12587_length_243_cov_27.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12587_length_243_cov_27.680328:1-243 [pilon] Processing NODE_10810_length_292_cov_15.824561:1-292 [pilon] NODE_4460_length_665_cov_8.367647:1-665 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 123, Coverage: 12, minDepth: 5 [pilon] Confirmed 455 of 665 bases (68.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4460_length_665_cov_8.367647:1-665 [pilon] Processing NODE_1471_length_1274_cov_19.231570:1-1274 [pilon] NODE_14592_length_243_cov_9.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14592_length_243_cov_9.450820:1-243 [pilon] Processing NODE_5171_length_603_cov_52.390041:1-603 [pilon] NODE_1543_length_1243_cov_4.217469:1-1243 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 125, Coverage: 13, minDepth: 5 [pilon] Confirmed 1042 of 1243 bases (83.83%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1543_length_1243_cov_4.217469:1-1243 [pilon] Processing NODE_14010_length_243_cov_14.131148:1-243 [pilon] NODE_264_length_2301_cov_11.114220:1-2301 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 602, Coverage: 26, minDepth: 7 [pilon] Confirmed 1621 of 2301 bases (70.45%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_264_length_2301_cov_11.114220:1-2301 [pilon] Processing NODE_11123_length_279_cov_12.436709:1-279 [pilon] NODE_8824_length_375_cov_27.929134:1-375 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 166, Coverage: 19, minDepth: 5 [pilon] Confirmed 343 of 375 bases (91.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8824_length_375_cov_27.929134:1-375 [pilon] Processing NODE_6359_length_513_cov_5.464286:1-513 [pilon] NODE_11786_length_253_cov_22.113636:1-253 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 63, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 253 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11786_length_253_cov_22.113636:1-253 [pilon] Processing NODE_2943_length_883_cov_1.955381:1-883 [pilon] NODE_1250_length_1366_cov_22.224096:1-1366 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 666, Coverage: 49, minDepth: 12 [pilon] Confirmed 658 of 1366 bases (48.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1250_length_1366_cov_22.224096:1-1366 [pilon] Processing NODE_3548_length_777_cov_24.028963:1-777 [pilon] NODE_8813_length_376_cov_24.996078:1-376 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 145, Coverage: 20, minDepth: 5 [pilon] Confirmed 337 of 376 bases (89.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8813_length_376_cov_24.996078:1-376 [pilon] Processing NODE_622_length_1781_cov_17.081325:1-1781 [pilon] NODE_12305_length_243_cov_33.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 53, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12305_length_243_cov_33.049180:1-243 [pilon] Processing NODE_13135_length_243_cov_21.647541:1-243 [pilon] NODE_9943_length_328_cov_5.212560:1-328 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 28, Coverage: 6, minDepth: 5 [pilon] Confirmed 209 of 328 bases (63.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9943_length_328_cov_5.212560:1-328 [pilon] Processing NODE_597_length_1813_cov_15.415485:1-1813 [pilon] NODE_12415_length_243_cov_30.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12415_length_243_cov_30.647541:1-243 [pilon] Processing NODE_6174_length_527_cov_0.401478:1-527 [pilon] NODE_14569_length_243_cov_9.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14569_length_243_cov_9.762295:1-243 [pilon] Processing NODE_5745_length_560_cov_2.849658:1-560 [pilon] NODE_14799_length_243_cov_7.721311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 3, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14799_length_243_cov_7.721311:1-243 [pilon] Processing NODE_11184_length_276_cov_19.541935:1-276 [pilon] NODE_10810_length_292_cov_15.824561:1-292 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 54, Coverage: 10, minDepth: 5 [pilon] Confirmed 237 of 292 bases (81.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10810_length_292_cov_15.824561:1-292 [pilon] Processing NODE_471_length_1947_cov_14.664294:1-1947 [pilon] NODE_11449_length_265_cov_9.430556:1-265 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 33, Coverage: 8, minDepth: 5 [pilon] Confirmed 204 of 265 bases (76.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11449_length_265_cov_9.430556:1-265 [pilon] Processing NODE_4281_length_683_cov_22.804270:1-683 [pilon] NODE_13302_length_243_cov_20.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13302_length_243_cov_20.221311:1-243 [pilon] Processing NODE_11340_length_270_cov_16.744966:1-270 [pilon] NODE_384_length_2065_cov_24.959362:1-2065 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 1415, Coverage: 75, minDepth: 19 [pilon] Confirmed 1695 of 2065 bases (82.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_384_length_2065_cov_24.959362:1-2065 [pilon] Processing NODE_697_length_1706_cov_20.143849:1-1706 [pilon] NODE_1471_length_1274_cov_19.231570:1-1274 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 535, Coverage: 40, minDepth: 10 [pilon] Confirmed 1095 of 1274 bases (85.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1471_length_1274_cov_19.231570:1-1274 [pilon] Processing NODE_1043_length_1471_cov_22.137778:1-1471 [pilon] NODE_14010_length_243_cov_14.131148:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14010_length_243_cov_14.131148:1-243 [pilon] Processing NODE_1624_length_1209_cov_20.974265:1-1209 [pilon] NODE_11123_length_279_cov_12.436709:1-279 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 55, Coverage: 3, minDepth: 5 [pilon] Confirmed 53 of 279 bases (19.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11123_length_279_cov_12.436709:1-279 [pilon] Processing NODE_6175_length_526_cov_14.809877:1-526 [pilon] NODE_5171_length_603_cov_52.390041:1-603 log: [pilon] frags shovill.bam: coverage 107 [pilon] Total Reads: 604, Coverage: 107, minDepth: 27 [pilon] Confirmed 524 of 603 bases (86.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5171_length_603_cov_52.390041:1-603 [pilon] Processing NODE_2244_length_1022_cov_1.241953:1-1022 [pilon] NODE_3548_length_777_cov_24.028963:1-777 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 372, Coverage: 43, minDepth: 11 [pilon] Confirmed 626 of 777 bases (80.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3548_length_777_cov_24.028963:1-777 [pilon] Processing NODE_8563_length_390_cov_14.799257:1-390 [pilon] NODE_622_length_1781_cov_17.081325:1-1781 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 651, Coverage: 39, minDepth: 10 [pilon] Confirmed 1210 of 1781 bases (67.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_622_length_1781_cov_17.081325:1-1781 [pilon] Processing NODE_2130_length_1051_cov_29.349462:1-1051 [pilon] NODE_13135_length_243_cov_21.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 66, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13135_length_243_cov_21.647541:1-243 [pilon] Processing NODE_3165_length_839_cov_2.314763:1-839 [pilon] NODE_6359_length_513_cov_5.464286:1-513 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 62, Coverage: 11, minDepth: 5 [pilon] Confirmed 350 of 513 bases (68.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6359_length_513_cov_5.464286:1-513 [pilon] Processing NODE_2955_length_881_cov_12.893421:1-881 [pilon] NODE_597_length_1813_cov_15.415485:1-1813 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 641, Coverage: 34, minDepth: 9 [pilon] Confirmed 1617 of 1813 bases (89.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_597_length_1813_cov_15.415485:1-1813 [pilon] Processing NODE_14813_length_243_cov_7.590164:1-243 [pilon] NODE_6174_length_527_cov_0.401478:1-527 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 10, Coverage: 2, minDepth: 5 [pilon] Confirmed 34 of 527 bases (6.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6174_length_527_cov_0.401478:1-527 [pilon] Processing NODE_7352_length_450_cov_23.987842:1-450 [pilon] NODE_5745_length_560_cov_2.849658:1-560 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 35, Coverage: 8, minDepth: 5 [pilon] Confirmed 413 of 560 bases (73.75%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5745_length_560_cov_2.849658:1-560 [pilon] Processing NODE_1644_length_1202_cov_2.295097:1-1202 [pilon] NODE_2943_length_883_cov_1.955381:1-883 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 43, Coverage: 6, minDepth: 5 [pilon] Confirmed 570 of 883 bases (64.55%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2943_length_883_cov_1.955381:1-883 [pilon] Processing NODE_303_length_2238_cov_11.794521:1-2238 [pilon] NODE_11184_length_276_cov_19.541935:1-276 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 71, Coverage: 5, minDepth: 5 [pilon] Confirmed 136 of 276 bases (49.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11184_length_276_cov_19.541935:1-276 [pilon] Processing NODE_559_length_1848_cov_16.565142:1-1848 [pilon] NODE_471_length_1947_cov_14.664294:1-1947 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 755, Coverage: 41, minDepth: 10 [pilon] Confirmed 1783 of 1947 bases (91.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_471_length_1947_cov_14.664294:1-1947 [pilon] Processing NODE_13610_length_243_cov_17.385246:1-243 [pilon] NODE_4281_length_683_cov_22.804270:1-683 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 341, Coverage: 32, minDepth: 8 [pilon] Confirmed 429 of 683 bases (62.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4281_length_683_cov_22.804270:1-683 [pilon] Processing NODE_14998_length_243_cov_5.418033:1-243 [pilon] NODE_697_length_1706_cov_20.143849:1-1706 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 684, Coverage: 47, minDepth: 12 [pilon] Confirmed 1217 of 1706 bases (71.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_697_length_1706_cov_20.143849:1-1706 [pilon] Processing NODE_13268_length_243_cov_20.434426:1-243 [pilon] NODE_1043_length_1471_cov_22.137778:1-1471 log: [pilon] frags shovill.bam: coverage 51 [pilon] Total Reads: 703, Coverage: 51, minDepth: 13 [pilon] Confirmed 1025 of 1471 bases (69.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] NODE_6175_length_526_cov_14.809877:1-526 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 148, Coverage: 21, minDepth: 5 [pilon] Confirmed 508 of 526 bases (96.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6175_length_526_cov_14.809877:1-526 [pilon] Finished processing NODE_1043_length_1471_cov_22.137778:1-1471 [pilon] Processing NODE_2650_length_938_cov_1.385557:1-938 [pilon] Processing NODE_8436_length_398_cov_9.772563:1-398 [pilon] NODE_1624_length_1209_cov_20.974265:1-1209 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 584, Coverage: 37, minDepth: 9 [pilon] Confirmed 1071 of 1209 bases (88.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1624_length_1209_cov_20.974265:1-1209 [pilon] Processing NODE_4105_length_704_cov_16.859348:1-704 [pilon] NODE_2244_length_1022_cov_1.241953:1-1022 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 45, Coverage: 5, minDepth: 5 [pilon] Confirmed 615 of 1022 bases (60.18%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2244_length_1022_cov_1.241953:1-1022 [pilon] Processing NODE_3747_length_748_cov_3.223285:1-748 [pilon] NODE_8563_length_390_cov_14.799257:1-390 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 106, Coverage: 14, minDepth: 5 [pilon] Confirmed 266 of 390 bases (68.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8563_length_390_cov_14.799257:1-390 [pilon] Processing NODE_15168_length_179_cov_2.551724:1-179 [pilon] NODE_11340_length_270_cov_16.744966:1-270 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 56, Coverage: 6, minDepth: 5 [pilon] Confirmed 139 of 270 bases (51.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11340_length_270_cov_16.744966:1-270 [pilon] Processing NODE_12920_length_243_cov_23.852459:1-243 [pilon] NODE_14813_length_243_cov_7.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14813_length_243_cov_7.590164:1-243 [pilon] Processing NODE_13351_length_243_cov_19.836066:1-243 [pilon] NODE_3165_length_839_cov_2.314763:1-839 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 45, Coverage: 7, minDepth: 5 [pilon] Confirmed 634 of 839 bases (75.57%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3165_length_839_cov_2.314763:1-839 [pilon] Processing NODE_8614_length_387_cov_23.718045:1-387 [pilon] NODE_2130_length_1051_cov_29.349462:1-1051 log: [pilon] frags shovill.bam: coverage 63 [pilon] Total Reads: 650, Coverage: 63, minDepth: 16 [pilon] Confirmed 839 of 1051 bases (79.83%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2130_length_1051_cov_29.349462:1-1051 [pilon] Processing NODE_7108_length_465_cov_11.546512:1-465 [pilon] NODE_7352_length_450_cov_23.987842:1-450 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 164, Coverage: 23, minDepth: 6 [pilon] Confirmed 344 of 450 bases (76.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7352_length_450_cov_23.987842:1-450 [pilon] Processing NODE_3975_length_717_cov_23.337248:1-717 [pilon] NODE_2955_length_881_cov_12.893421:1-881 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 283, Coverage: 29, minDepth: 7 [pilon] Confirmed 705 of 881 bases (80.02%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2955_length_881_cov_12.893421:1-881 [pilon] Processing NODE_3518_length_781_cov_2.728788:1-781 [pilon] NODE_1644_length_1202_cov_2.295097:1-1202 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 62, Coverage: 6, minDepth: 5 [pilon] Confirmed 574 of 1202 bases (47.75%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1644_length_1202_cov_2.295097:1-1202 [pilon] Processing NODE_9092_length_362_cov_12.780083:1-362 [pilon] NODE_14998_length_243_cov_5.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14998_length_243_cov_5.418033:1-243 [pilon] Processing NODE_15070_length_237_cov_12.758621:1-237 [pilon] NODE_559_length_1848_cov_16.565142:1-1848 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 707, Coverage: 38, minDepth: 10 [pilon] Confirmed 1419 of 1848 bases (76.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_559_length_1848_cov_16.565142:1-1848 [pilon] Processing NODE_2540_length_958_cov_50.602151:1-958 [pilon] NODE_303_length_2238_cov_11.794521:1-2238 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 602, Coverage: 31, minDepth: 8 [pilon] Confirmed 1943 of 2238 bases (86.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_303_length_2238_cov_11.794521:1-2238 [pilon] Processing NODE_14248_length_243_cov_12.262295:1-243 [pilon] NODE_13268_length_243_cov_20.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13268_length_243_cov_20.434426:1-243 [pilon] Processing NODE_8469_length_395_cov_70.281022:1-395 [pilon] NODE_13610_length_243_cov_17.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13610_length_243_cov_17.385246:1-243 [pilon] Processing NODE_3974_length_717_cov_30.073826:1-717 [pilon] NODE_8436_length_398_cov_9.772563:1-398 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 61, Coverage: 10, minDepth: 5 [pilon] Confirmed 259 of 398 bases (65.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8436_length_398_cov_9.772563:1-398 [pilon] Processing NODE_1561_length_1233_cov_20.647482:1-1233 [pilon] NODE_2650_length_938_cov_1.385557:1-938 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 38, Coverage: 5, minDepth: 5 [pilon] Confirmed 543 of 938 bases (57.89%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2650_length_938_cov_1.385557:1-938 [pilon] Processing NODE_8655_length_384_cov_25.505703:1-384 [pilon] NODE_4105_length_704_cov_16.859348:1-704 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 213, Coverage: 28, minDepth: 7 [pilon] Confirmed 544 of 704 bases (77.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4105_length_704_cov_16.859348:1-704 [pilon] Processing NODE_9147_length_360_cov_11.476987:1-360 [pilon] NODE_3747_length_748_cov_3.223285:1-748 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 60, Coverage: 10, minDepth: 5 [pilon] Confirmed 543 of 748 bases (72.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3747_length_748_cov_3.223285:1-748 [pilon] Processing NODE_12068_length_245_cov_9.846774:1-245 [pilon] NODE_15168_length_179_cov_2.551724:1-179 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 8, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 179 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15168_length_179_cov_2.551724:1-179 [pilon] NODE_13351_length_243_cov_19.836066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 48, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13351_length_243_cov_19.836066:1-243 [pilon] Processing NODE_11001_length_285_cov_1.292683:1-285 [pilon] NODE_7108_length_465_cov_11.546512:1-465 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 93, Coverage: 8, minDepth: 5 [pilon] Confirmed 264 of 465 bases (56.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7108_length_465_cov_11.546512:1-465 [pilon] NODE_3975_length_717_cov_23.337248:1-717 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 365, Coverage: 37, minDepth: 9 [pilon] Confirmed 469 of 717 bases (65.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3975_length_717_cov_23.337248:1-717 [pilon] Processing NODE_12679_length_243_cov_26.426230:1-243 [pilon] NODE_3518_length_781_cov_2.728788:1-781 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 57, Coverage: 9, minDepth: 5 [pilon] Confirmed 695 of 781 bases (88.99%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3518_length_781_cov_2.728788:1-781 [pilon] Processing NODE_11116_length_279_cov_15.962025:1-279 [pilon] NODE_9092_length_362_cov_12.780083:1-362 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 48, Coverage: 3, minDepth: 5 [pilon] Confirmed 119 of 362 bases (32.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9092_length_362_cov_12.780083:1-362 [pilon] Processing NODE_10567_length_303_cov_6.818681:1-303 [pilon] NODE_12920_length_243_cov_23.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12920_length_243_cov_23.852459:1-243 [pilon] NODE_15070_length_237_cov_12.758621:1-237 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 32, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 237 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15070_length_237_cov_12.758621:1-237 [pilon] Processing NODE_81_length_3164_cov_32.062110:1-3164 [pilon] NODE_8614_length_387_cov_23.718045:1-387 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 144, Coverage: 12, minDepth: 5 [pilon] Confirmed 224 of 387 bases (57.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8614_length_387_cov_23.718045:1-387 [pilon] Processing NODE_13436_length_243_cov_18.959016:1-243 [pilon] NODE_14248_length_243_cov_12.262295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14248_length_243_cov_12.262295:1-243 [pilon] Processing NODE_9403_length_350_cov_21.240175:1-350 [pilon] NODE_3974_length_717_cov_30.073826:1-717 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 427, Coverage: 41, minDepth: 10 [pilon] Confirmed 573 of 717 bases (79.92%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3974_length_717_cov_30.073826:1-717 [pilon] NODE_2540_length_958_cov_50.602151:1-958 log: [pilon] frags shovill.bam: coverage 108 [pilon] Total Reads: 947, Coverage: 108, minDepth: 27 [pilon] Confirmed 834 of 958 bases (87.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2540_length_958_cov_50.602151:1-958 [pilon] Processing NODE_2115_length_1055_cov_27.062099:1-1055 [pilon] NODE_8469_length_395_cov_70.281022:1-395 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 424, Coverage: 75, minDepth: 19 [pilon] Confirmed 345 of 395 bases (87.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8469_length_395_cov_70.281022:1-395 [pilon] Processing NODE_1306_length_1338_cov_22.792112:1-1338 [pilon] NODE_8655_length_384_cov_25.505703:1-384 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 142, Coverage: 22, minDepth: 6 [pilon] Confirmed 304 of 384 bases (79.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8655_length_384_cov_25.505703:1-384 [pilon] Processing NODE_7967_length_420_cov_1.327759:1-420 [pilon] NODE_1561_length_1233_cov_20.647482:1-1233 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 521, Coverage: 39, minDepth: 10 [pilon] Confirmed 1152 of 1233 bases (93.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1561_length_1233_cov_20.647482:1-1233 [pilon] Processing NODE_4352_length_676_cov_2.369369:1-676 [pilon] NODE_12068_length_245_cov_9.846774:1-245 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 34, Coverage: 3, minDepth: 5 [pilon] Confirmed 27 of 245 bases (11.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12068_length_245_cov_9.846774:1-245 [pilon] Processing NODE_15122_length_207_cov_73.523256:1-207 [pilon] NODE_9147_length_360_cov_11.476987:1-360 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 68, Coverage: 4, minDepth: 5 [pilon] Confirmed 146 of 360 bases (40.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9147_length_360_cov_11.476987:1-360 [pilon] Processing NODE_15195_length_161_cov_43.750000:1-161 [pilon] NODE_11001_length_285_cov_1.292683:1-285 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 285 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11001_length_285_cov_1.292683:1-285 [pilon] Processing NODE_11234_length_274_cov_12.444444:1-274 [pilon] NODE_11116_length_279_cov_15.962025:1-279 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 45, Coverage: 2, minDepth: 5 [pilon] Confirmed 29 of 279 bases (10.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11116_length_279_cov_15.962025:1-279 [pilon] Processing NODE_1814_length_1143_cov_23.095890:1-1143 [pilon] NODE_12679_length_243_cov_26.426230:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 45, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12679_length_243_cov_26.426230:1-243 [pilon] Processing NODE_4054_length_710_cov_17.774194:1-710 [pilon] NODE_10567_length_303_cov_6.818681:1-303 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 33, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 303 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10567_length_303_cov_6.818681:1-303 [pilon] Processing NODE_11848_length_252_cov_8.061069:1-252 [pilon] NODE_13436_length_243_cov_18.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13436_length_243_cov_18.959016:1-243 [pilon] NODE_9403_length_350_cov_21.240175:1-350 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 127, Coverage: 2, minDepth: 5 [pilon] Confirmed 106 of 350 bases (30.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9403_length_350_cov_21.240175:1-350 [pilon] Processing NODE_13916_length_243_cov_14.786885:1-243 [pilon] NODE_7967_length_420_cov_1.327759:1-420 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 12, Coverage: 4, minDepth: 5 [pilon] Confirmed 142 of 420 bases (33.81%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7967_length_420_cov_1.327759:1-420 [pilon] Processing NODE_6080_length_533_cov_43.242718:1-533 [pilon] NODE_1306_length_1338_cov_22.792112:1-1338 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 647, Coverage: 38, minDepth: 10 [pilon] Confirmed 1230 of 1338 bases (91.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1306_length_1338_cov_22.792112:1-1338 [pilon] Processing NODE_6871_length_479_cov_50.513966:1-479 [pilon] NODE_81_length_3164_cov_32.062110:1-3164 log: [pilon] frags shovill.bam: coverage 90 [pilon] Total Reads: 2371, Coverage: 90, minDepth: 23 [pilon] Confirmed 2440 of 3164 bases (77.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_81_length_3164_cov_32.062110:1-3164 [pilon] Processing NODE_12986_length_243_cov_23.098361:1-243 [pilon] NODE_2115_length_1055_cov_27.062099:1-1055 log: [pilon] frags shovill.bam: coverage 57 [pilon] Total Reads: 607, Coverage: 57, minDepth: 14 [pilon] Confirmed 864 of 1055 bases (81.90%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2115_length_1055_cov_27.062099:1-1055 [pilon] Processing NODE_6757_length_486_cov_2.002740:1-486 [pilon] NODE_4352_length_676_cov_2.369369:1-676 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 36, Coverage: 7, minDepth: 5 [pilon] Confirmed 498 of 676 bases (73.67%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4352_length_676_cov_2.369369:1-676 [pilon] Processing NODE_4077_length_708_cov_8.620102:1-708 [pilon] NODE_15195_length_161_cov_43.750000:1-161 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 161 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15195_length_161_cov_43.750000:1-161 [pilon] Processing NODE_14807_length_243_cov_7.672131:1-243 [pilon] NODE_15122_length_207_cov_73.523256:1-207 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 145, Coverage: 8, minDepth: 5 [pilon] Confirmed 151 of 207 bases (72.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15122_length_207_cov_73.523256:1-207 [pilon] Processing NODE_2630_length_941_cov_15.224390:1-941 [pilon] NODE_11234_length_274_cov_12.444444:1-274 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 43, Coverage: 3, minDepth: 5 [pilon] Confirmed 84 of 274 bases (30.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11234_length_274_cov_12.444444:1-274 [pilon] Processing NODE_11689_length_257_cov_5.860294:1-257 [pilon] NODE_1814_length_1143_cov_23.095890:1-1143 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 528, Coverage: 37, minDepth: 9 [pilon] Confirmed 890 of 1143 bases (77.87%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1814_length_1143_cov_23.095890:1-1143 [pilon] Processing NODE_13355_length_243_cov_19.811475:1-243 [pilon] NODE_4054_length_710_cov_17.774194:1-710 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 227, Coverage: 31, minDepth: 8 [pilon] Confirmed 548 of 710 bases (77.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4054_length_710_cov_17.774194:1-710 [pilon] Processing NODE_3681_length_757_cov_22.338050:1-757 [pilon] NODE_11848_length_252_cov_8.061069:1-252 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 252 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11848_length_252_cov_8.061069:1-252 [pilon] Processing NODE_15205_length_157_cov_12.611111:1-157 [pilon] NODE_13916_length_243_cov_14.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 22, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13916_length_243_cov_14.786885:1-243 [pilon] Processing NODE_1481_length_1270_cov_22.943429:1-1270 [pilon] NODE_6080_length_533_cov_43.242718:1-533 log: [pilon] NODE_6871_length_479_cov_50.513966:1-479 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 397, Coverage: 69, minDepth: 17 [pilon] Confirmed 417 of 479 bases (87.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6871_length_479_cov_50.513966:1-479 [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 427, Coverage: 71, minDepth: 18 [pilon] Confirmed 373 of 533 bases (69.98%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_7969_length_419_cov_65.140940:1-419 [pilon] Finished processing NODE_6080_length_533_cov_43.242718:1-533 [pilon] Processing NODE_12271_length_243_cov_34.016393:1-243 [pilon] NODE_6757_length_486_cov_2.002740:1-486 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 23, Coverage: 5, minDepth: 5 [pilon] Confirmed 221 of 486 bases (45.47%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6757_length_486_cov_2.002740:1-486 [pilon] Processing NODE_7554_length_441_cov_1.109375:1-441 [pilon] NODE_12986_length_243_cov_23.098361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 54, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12986_length_243_cov_23.098361:1-243 [pilon] NODE_4077_length_708_cov_8.620102:1-708 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 123, Coverage: 3, minDepth: 5 [pilon] Confirmed 268 of 708 bases (37.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4077_length_708_cov_8.620102:1-708 [pilon] Processing NODE_5390_length_585_cov_2.187500:1-585 [pilon] NODE_14807_length_243_cov_7.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14807_length_243_cov_7.672131:1-243 [pilon] Processing NODE_6316_length_516_cov_24.010127:1-516 [pilon] NODE_2630_length_941_cov_15.224390:1-941 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 344, Coverage: 28, minDepth: 7 [pilon] Confirmed 769 of 941 bases (81.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2630_length_941_cov_15.224390:1-941 [pilon] Processing NODE_752_length_1667_cov_1.478655:1-1667 [pilon] NODE_11689_length_257_cov_5.860294:1-257 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 257 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11689_length_257_cov_5.860294:1-257 [pilon] Processing NODE_792_length_1629_cov_23.314324:1-1629 [pilon] NODE_13355_length_243_cov_19.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13355_length_243_cov_19.811475:1-243 [pilon] NODE_15205_length_157_cov_12.611111:1-157 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 157 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15205_length_157_cov_12.611111:1-157 [pilon] Processing NODE_14473_length_243_cov_10.475410:1-243 [pilon] NODE_3681_length_757_cov_22.338050:1-757 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 375, Coverage: 41, minDepth: 10 [pilon] Confirmed 545 of 757 bases (71.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3681_length_757_cov_22.338050:1-757 [pilon] Processing NODE_8271_length_405_cov_24.721831:1-405 [pilon] NODE_1481_length_1270_cov_22.943429:1-1270 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 608, Coverage: 53, minDepth: 13 [pilon] Confirmed 1182 of 1270 bases (93.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1481_length_1270_cov_22.943429:1-1270 [pilon] Processing NODE_7212_length_459_cov_22.523669:1-459 [pilon] NODE_7969_length_419_cov_65.140940:1-419 log: [pilon] frags shovill.bam: coverage 76 [pilon] Total Reads: 424, Coverage: 76, minDepth: 19 [pilon] Confirmed 369 of 419 bases (88.07%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7969_length_419_cov_65.140940:1-419 [pilon] Processing NODE_14843_length_243_cov_7.278689:1-243 [pilon] NODE_7554_length_441_cov_1.109375:1-441 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 38 of 441 bases (8.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7554_length_441_cov_1.109375:1-441 [pilon] Processing NODE_14671_length_243_cov_8.819672:1-243 [pilon] NODE_5390_length_585_cov_2.187500:1-585 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 226 of 585 bases (38.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5390_length_585_cov_2.187500:1-585 [pilon] Processing NODE_4521_length_660_cov_1.133581:1-660 [pilon] NODE_6316_length_516_cov_24.010127:1-516 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 212, Coverage: 29, minDepth: 7 [pilon] Confirmed 348 of 516 bases (67.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6316_length_516_cov_24.010127:1-516 [pilon] Processing NODE_4174_length_696_cov_22.735652:1-696 [pilon] NODE_12271_length_243_cov_34.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 57, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12271_length_243_cov_34.016393:1-243 [pilon] Processing NODE_11023_length_282_cov_25.583851:1-282 [pilon] NODE_752_length_1667_cov_1.478655:1-1667 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 64, Coverage: 5, minDepth: 5 [pilon] Confirmed 706 of 1667 bases (42.35%) [pilon] Corrected 4 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_752_length_1667_cov_1.478655:1-1667 [pilon] Processing NODE_8989_length_367_cov_15.073171:1-367 [pilon] NODE_792_length_1629_cov_23.314324:1-1629 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 932, Coverage: 36, minDepth: 9 [pilon] Confirmed 1489 of 1629 bases (91.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_792_length_1629_cov_23.314324:1-1629 [pilon] Processing NODE_6891_length_478_cov_2.162465:1-478 [pilon] NODE_14473_length_243_cov_10.475410:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 2, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14473_length_243_cov_10.475410:1-243 [pilon] Processing NODE_8224_length_407_cov_23.087413:1-407 [pilon] NODE_8271_length_405_cov_24.721831:1-405 log: [pilon] frags shovill.bam: coverage 20 [pilon] Total Reads: 162, Coverage: 20, minDepth: 5 [pilon] Confirmed 289 of 405 bases (71.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8271_length_405_cov_24.721831:1-405 [pilon] Processing NODE_10303_length_313_cov_5.895833:1-313 [pilon] NODE_14671_length_243_cov_8.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 25, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14671_length_243_cov_8.819672:1-243 [pilon] Processing NODE_1007_length_1491_cov_0.941606:1-1491 [pilon] NODE_14843_length_243_cov_7.278689:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14843_length_243_cov_7.278689:1-243 [pilon] Processing NODE_2222_length_1028_cov_44.898567:1-1028 [pilon] NODE_4521_length_660_cov_1.133581:1-660 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 254 of 660 bases (38.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4521_length_660_cov_1.133581:1-660 [pilon] Processing NODE_9674_length_339_cov_13.880734:1-339 [pilon] NODE_7212_length_459_cov_22.523669:1-459 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 203, Coverage: 12, minDepth: 5 [pilon] Confirmed 279 of 459 bases (60.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7212_length_459_cov_22.523669:1-459 [pilon] Processing NODE_8027_length_417_cov_17.679054:1-417 [pilon] NODE_11023_length_282_cov_25.583851:1-282 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 71, Coverage: 7, minDepth: 5 [pilon] Confirmed 188 of 282 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11023_length_282_cov_25.583851:1-282 [pilon] Processing NODE_4309_length_680_cov_11.833631:1-680 [pilon] NODE_8989_length_367_cov_15.073171:1-367 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 71, Coverage: 8, minDepth: 5 [pilon] Confirmed 242 of 367 bases (65.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8989_length_367_cov_15.073171:1-367 [pilon] Processing NODE_12530_length_243_cov_28.639344:1-243 [pilon] NODE_6891_length_478_cov_2.162465:1-478 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 17, Coverage: 4, minDepth: 5 [pilon] Confirmed 233 of 478 bases (48.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6891_length_478_cov_2.162465:1-478 [pilon] NODE_4174_length_696_cov_22.735652:1-696 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 349, Coverage: 38, minDepth: 10 [pilon] Confirmed 631 of 696 bases (90.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4174_length_696_cov_22.735652:1-696 [pilon] Processing NODE_4827_length_632_cov_11.704501:1-632 [pilon] NODE_8224_length_407_cov_23.087413:1-407 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 152, Coverage: 14, minDepth: 5 [pilon] Confirmed 255 of 407 bases (62.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8224_length_407_cov_23.087413:1-407 [pilon] Processing NODE_10961_length_285_cov_22.115854:1-285 [pilon] NODE_10303_length_313_cov_5.895833:1-313 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 48, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 313 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10303_length_313_cov_5.895833:1-313 [pilon] Processing NODE_14202_length_243_cov_12.590164:1-243 [pilon] NODE_9674_length_339_cov_13.880734:1-339 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 50, Coverage: 2, minDepth: 5 [pilon] Confirmed 106 of 339 bases (31.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9674_length_339_cov_13.880734:1-339 [pilon] Processing NODE_182_length_2560_cov_27.303403:1-2560 [pilon] NODE_2222_length_1028_cov_44.898567:1-1028 log: [pilon] frags shovill.bam: coverage 107 [pilon] Total Reads: 922, Coverage: 107, minDepth: 27 [pilon] Confirmed 824 of 1028 bases (80.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2222_length_1028_cov_44.898567:1-1028 [pilon] Processing NODE_13774_length_243_cov_15.852459:1-243 [pilon] NODE_1007_length_1491_cov_0.941606:1-1491 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 51, Coverage: 4, minDepth: 5 [pilon] Confirmed 569 of 1491 bases (38.16%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1007_length_1491_cov_0.941606:1-1491 [pilon] Processing NODE_12898_length_243_cov_24.090164:1-243 [pilon] NODE_8027_length_417_cov_17.679054:1-417 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 123, Coverage: 8, minDepth: 5 [pilon] Confirmed 234 of 417 bases (56.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8027_length_417_cov_17.679054:1-417 [pilon] Processing NODE_14943_length_243_cov_6.229508:1-243 [pilon] NODE_4309_length_680_cov_11.833631:1-680 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 146, Coverage: 24, minDepth: 6 [pilon] Confirmed 523 of 680 bases (76.91%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4309_length_680_cov_11.833631:1-680 [pilon] Processing NODE_7629_length_436_cov_6.292063:1-436 [pilon] NODE_12530_length_243_cov_28.639344:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12530_length_243_cov_28.639344:1-243 [pilon] Processing NODE_651_length_1745_cov_3.248153:1-1745 [pilon] NODE_4827_length_632_cov_11.704501:1-632 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 141, Coverage: 13, minDepth: 5 [pilon] Confirmed 513 of 632 bases (81.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4827_length_632_cov_11.704501:1-632 [pilon] Processing NODE_12021_length_246_cov_12.632000:1-246 [pilon] NODE_10961_length_285_cov_22.115854:1-285 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 71, Coverage: 5, minDepth: 5 [pilon] Confirmed 141 of 285 bases (49.47%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10961_length_285_cov_22.115854:1-285 [pilon] Processing NODE_12334_length_243_cov_32.516393:1-243 [pilon] NODE_14202_length_243_cov_12.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14202_length_243_cov_12.590164:1-243 [pilon] Processing NODE_9891_length_330_cov_21.511962:1-330 [pilon] NODE_13774_length_243_cov_15.852459:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13774_length_243_cov_15.852459:1-243 [pilon] Processing NODE_8520_length_393_cov_12.591912:1-393 [pilon] NODE_12898_length_243_cov_24.090164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 70, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12898_length_243_cov_24.090164:1-243 [pilon] Processing NODE_6826_length_481_cov_38.116667:1-481 [pilon] NODE_182_length_2560_cov_27.303403:1-2560 log: [pilon] frags shovill.bam: coverage 56 [pilon] Total Reads: 1653, Coverage: 56, minDepth: 14 [pilon] Confirmed 2370 of 2560 bases (92.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_182_length_2560_cov_27.303403:1-2560 [pilon] Processing NODE_14405_length_243_cov_11.049180:1-243 [pilon] NODE_14943_length_243_cov_6.229508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14943_length_243_cov_6.229508:1-243 [pilon] Processing NODE_2342_length_1002_cov_13.465380:1-1002 [pilon] NODE_7629_length_436_cov_6.292063:1-436 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 35, Coverage: 10, minDepth: 5 [pilon] Confirmed 318 of 436 bases (72.94%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7629_length_436_cov_6.292063:1-436 [pilon] Processing NODE_14271_length_243_cov_12.057377:1-243 [pilon] NODE_651_length_1745_cov_3.248153:1-1745 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 125, Coverage: 9, minDepth: 5 [pilon] Confirmed 1320 of 1745 bases (75.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_651_length_1745_cov_3.248153:1-1745 [pilon] Processing NODE_470_length_1948_cov_1.886700:1-1948 [pilon] NODE_12021_length_246_cov_12.632000:1-246 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 37, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12021_length_246_cov_12.632000:1-246 [pilon] Processing NODE_9625_length_340_cov_39.223744:1-340 [pilon] NODE_12334_length_243_cov_32.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 61, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12334_length_243_cov_32.516393:1-243 [pilon] Processing NODE_14228_length_243_cov_12.360656:1-243 [pilon] NODE_9891_length_330_cov_21.511962:1-330 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 81, Coverage: 9, minDepth: 5 [pilon] Confirmed 216 of 330 bases (65.45%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9891_length_330_cov_21.511962:1-330 [pilon] Processing NODE_7743_length_430_cov_2.262136:1-430 [pilon] NODE_8520_length_393_cov_12.591912:1-393 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 94, Coverage: 12, minDepth: 5 [pilon] Confirmed 293 of 393 bases (74.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8520_length_393_cov_12.591912:1-393 [pilon] Processing NODE_9265_length_355_cov_12.128205:1-355 [pilon] NODE_6826_length_481_cov_38.116667:1-481 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 377, Coverage: 47, minDepth: 12 [pilon] Confirmed 349 of 481 bases (72.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6826_length_481_cov_38.116667:1-481 [pilon] Processing NODE_13069_length_243_cov_22.245902:1-243 [pilon] NODE_14405_length_243_cov_11.049180:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14405_length_243_cov_11.049180:1-243 [pilon] Processing NODE_1939_length_1101_cov_18.867347:1-1101 [pilon] NODE_9625_length_340_cov_39.223744:1-340 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 205, Coverage: 31, minDepth: 8 [pilon] Confirmed 308 of 340 bases (90.59%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9625_length_340_cov_39.223744:1-340 [pilon] Processing NODE_5994_length_541_cov_28.371429:1-541 [pilon] NODE_14271_length_243_cov_12.057377:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14271_length_243_cov_12.057377:1-243 [pilon] Processing NODE_10906_length_288_cov_17.736527:1-288 [pilon] NODE_470_length_1948_cov_1.886700:1-1948 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 105, Coverage: 7, minDepth: 5 [pilon] Confirmed 1398 of 1948 bases (71.77%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_470_length_1948_cov_1.886700:1-1948 [pilon] Processing NODE_14277_length_243_cov_12.024590:1-243 [pilon] NODE_2342_length_1002_cov_13.465380:1-1002 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 270, Coverage: 28, minDepth: 7 [pilon] Confirmed 815 of 1002 bases (81.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2342_length_1002_cov_13.465380:1-1002 [pilon] Processing NODE_934_length_1538_cov_17.852505:1-1538 [pilon] NODE_14228_length_243_cov_12.360656:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14228_length_243_cov_12.360656:1-243 [pilon] Processing NODE_8104_length_413_cov_30.472603:1-413 [pilon] NODE_7743_length_430_cov_2.262136:1-430 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 27, Coverage: 3, minDepth: 5 [pilon] Confirmed 145 of 430 bases (33.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7743_length_430_cov_2.262136:1-430 [pilon] Processing NODE_11058_length_281_cov_8.750000:1-281 [pilon] NODE_9265_length_355_cov_12.128205:1-355 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 67, Coverage: 13, minDepth: 5 [pilon] Confirmed 300 of 355 bases (84.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9265_length_355_cov_12.128205:1-355 [pilon] Processing NODE_11611_length_259_cov_14.826087:1-259 [pilon] NODE_1939_length_1101_cov_18.867347:1-1101 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 475, Coverage: 32, minDepth: 8 [pilon] Confirmed 940 of 1101 bases (85.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1939_length_1101_cov_18.867347:1-1101 [pilon] Processing NODE_6530_length_501_cov_21.536842:1-501 [pilon] NODE_13069_length_243_cov_22.245902:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13069_length_243_cov_22.245902:1-243 [pilon] Processing NODE_10252_length_315_cov_12.154639:1-315 [pilon] NODE_5994_length_541_cov_28.371429:1-541 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 288, Coverage: 42, minDepth: 11 [pilon] Confirmed 441 of 541 bases (81.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5994_length_541_cov_28.371429:1-541 [pilon] Processing NODE_11666_length_258_cov_9.970803:1-258 [pilon] NODE_14277_length_243_cov_12.024590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 15, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14277_length_243_cov_12.024590:1-243 [pilon] Processing NODE_2436_length_981_cov_2.020930:1-981 [pilon] NODE_10906_length_288_cov_17.736527:1-288 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 69, Coverage: 5, minDepth: 5 [pilon] Confirmed 147 of 288 bases (51.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10906_length_288_cov_17.736527:1-288 [pilon] NODE_934_length_1538_cov_17.852505:1-1538 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 543, Coverage: 27, minDepth: 7 [pilon] Confirmed 1283 of 1538 bases (83.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_934_length_1538_cov_17.852505:1-1538 [pilon] Processing NODE_6202_length_524_cov_13.330025:1-524 [pilon] NODE_11058_length_281_cov_8.750000:1-281 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 281 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11058_length_281_cov_8.750000:1-281 [pilon] Processing NODE_3162_length_839_cov_12.267409:1-839 [pilon] NODE_8104_length_413_cov_30.472603:1-413 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 211, Coverage: 41, minDepth: 10 [pilon] Confirmed 356 of 413 bases (86.20%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8104_length_413_cov_30.472603:1-413 [pilon] Processing NODE_6046_length_536_cov_15.828916:1-536 [pilon] NODE_11611_length_259_cov_14.826087:1-259 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 42, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 259 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11611_length_259_cov_14.826087:1-259 [pilon] Processing NODE_14601_length_243_cov_9.385246:1-243 [pilon] NODE_6530_length_501_cov_21.536842:1-501 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 228, Coverage: 24, minDepth: 6 [pilon] Confirmed 261 of 501 bases (52.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6530_length_501_cov_21.536842:1-501 [pilon] Processing NODE_3161_length_839_cov_56.227019:1-839 [pilon] NODE_11666_length_258_cov_9.970803:1-258 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 118 of 258 bases (45.74%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11666_length_258_cov_9.970803:1-258 [pilon] Processing NODE_11752_length_255_cov_17.171642:1-255 [pilon] NODE_10252_length_315_cov_12.154639:1-315 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 57, Coverage: 7, minDepth: 5 [pilon] Confirmed 203 of 315 bases (64.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10252_length_315_cov_12.154639:1-315 [pilon] Processing NODE_7994_length_418_cov_64.976431:1-418 [pilon] NODE_2436_length_981_cov_2.020930:1-981 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 45, Coverage: 6, minDepth: 5 [pilon] Confirmed 359 of 981 bases (36.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2436_length_981_cov_2.020930:1-981 [pilon] Processing NODE_4155_length_698_cov_7.459272:1-698 [pilon] NODE_6202_length_524_cov_13.330025:1-524 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 124, Coverage: 14, minDepth: 5 [pilon] Confirmed 319 of 524 bases (60.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6202_length_524_cov_13.330025:1-524 [pilon] Processing NODE_8177_length_409_cov_26.871528:1-409 [pilon] NODE_3162_length_839_cov_12.267409:1-839 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 213, Coverage: 23, minDepth: 6 [pilon] Confirmed 652 of 839 bases (77.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3162_length_839_cov_12.267409:1-839 [pilon] Processing NODE_8193_length_408_cov_42.763066:1-408 [pilon] NODE_14601_length_243_cov_9.385246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14601_length_243_cov_9.385246:1-243 [pilon] Processing NODE_6785_length_484_cov_2.523416:1-484 [pilon] NODE_6046_length_536_cov_15.828916:1-536 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 146, Coverage: 17, minDepth: 5 [pilon] Confirmed 358 of 536 bases (66.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6046_length_536_cov_15.828916:1-536 [pilon] Processing NODE_2364_length_998_cov_45.214367:1-998 [pilon] NODE_3161_length_839_cov_56.227019:1-839 log: [pilon] frags shovill.bam: coverage 126 [pilon] Total Reads: 905, Coverage: 126, minDepth: 32 [pilon] Confirmed 704 of 839 bases (83.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3161_length_839_cov_56.227019:1-839 [pilon] Processing NODE_6935_length_475_cov_22.014124:1-475 [pilon] NODE_11752_length_255_cov_17.171642:1-255 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 50, Coverage: 4, minDepth: 5 [pilon] Confirmed 88 of 255 bases (34.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11752_length_255_cov_17.171642:1-255 [pilon] Processing NODE_8987_length_367_cov_16.394309:1-367 [pilon] NODE_7994_length_418_cov_64.976431:1-418 log: [pilon] frags shovill.bam: coverage 82 [pilon] Total Reads: 452, Coverage: 82, minDepth: 21 [pilon] Confirmed 368 of 418 bases (88.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7994_length_418_cov_64.976431:1-418 [pilon] Processing NODE_1077_length_1454_cov_1.711178:1-1454 [pilon] NODE_4155_length_698_cov_7.459272:1-698 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 111, Coverage: 14, minDepth: 5 [pilon] Confirmed 505 of 698 bases (72.35%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4155_length_698_cov_7.459272:1-698 [pilon] Processing NODE_8657_length_384_cov_23.387833:1-384 [pilon] NODE_8193_length_408_cov_42.763066:1-408 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 293, Coverage: 54, minDepth: 14 [pilon] Confirmed 365 of 408 bases (89.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8193_length_408_cov_42.763066:1-408 [pilon] Processing NODE_7889_length_423_cov_20.430464:1-423 [pilon] NODE_8177_length_409_cov_26.871528:1-409 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 168, Coverage: 27, minDepth: 7 [pilon] Confirmed 317 of 409 bases (77.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8177_length_409_cov_26.871528:1-409 [pilon] Processing NODE_2416_length_987_cov_31.394919:1-987 [pilon] NODE_6785_length_484_cov_2.523416:1-484 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 27, Coverage: 7, minDepth: 5 [pilon] Confirmed 289 of 484 bases (59.71%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6785_length_484_cov_2.523416:1-484 [pilon] Processing NODE_6165_length_527_cov_21.187192:1-527 [pilon] NODE_2364_length_998_cov_45.214367:1-998 log: [pilon] frags shovill.bam: coverage 96 [pilon] Total Reads: 930, Coverage: 96, minDepth: 24 [pilon] Confirmed 722 of 998 bases (72.34%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2364_length_998_cov_45.214367:1-998 [pilon] Processing NODE_7190_length_460_cov_18.079646:1-460 [pilon] NODE_8987_length_367_cov_16.394309:1-367 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 94, Coverage: 11, minDepth: 5 [pilon] Confirmed 284 of 367 bases (77.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8987_length_367_cov_16.394309:1-367 [pilon] Processing NODE_7904_length_423_cov_1.321192:1-423 [pilon] NODE_6935_length_475_cov_22.014124:1-475 log: [pilon] frags shovill.bam: coverage 21 [pilon] Total Reads: 191, Coverage: 21, minDepth: 5 [pilon] Confirmed 284 of 475 bases (59.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6935_length_475_cov_22.014124:1-475 [pilon] Processing NODE_13699_length_243_cov_16.418033:1-243 [pilon] NODE_1077_length_1454_cov_1.711178:1-1454 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 66, Coverage: 6, minDepth: 5 [pilon] Confirmed 634 of 1454 bases (43.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1077_length_1454_cov_1.711178:1-1454 [pilon] Processing NODE_3037_length_866_cov_36.943624:1-866 [pilon] NODE_8657_length_384_cov_23.387833:1-384 log: [pilon] frags shovill.bam: coverage 18 [pilon] Total Reads: 142, Coverage: 18, minDepth: 5 [pilon] Confirmed 244 of 384 bases (63.54%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8657_length_384_cov_23.387833:1-384 [pilon] Processing NODE_15226_length_142_cov_22.476190:1-142 [pilon] NODE_7889_length_423_cov_20.430464:1-423 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 144, Coverage: 28, minDepth: 7 [pilon] Confirmed 329 of 423 bases (77.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7889_length_423_cov_20.430464:1-423 [pilon] Processing NODE_13226_length_243_cov_20.885246:1-243 [pilon] NODE_2416_length_987_cov_31.394919:1-987 log: [pilon] frags shovill.bam: coverage 66 [pilon] Total Reads: 634, Coverage: 66, minDepth: 17 [pilon] Confirmed 717 of 987 bases (72.64%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2416_length_987_cov_31.394919:1-987 [pilon] Processing NODE_779_length_1636_cov_2.281188:1-1636 [pilon] NODE_6165_length_527_cov_21.187192:1-527 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 248, Coverage: 24, minDepth: 6 [pilon] Confirmed 297 of 527 bases (56.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6165_length_527_cov_21.187192:1-527 [pilon] Processing NODE_983_length_1507_cov_12.523810:1-1507 [pilon] NODE_13699_length_243_cov_16.418033:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13699_length_243_cov_16.418033:1-243 [pilon] NODE_7904_length_423_cov_1.321192:1-423 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 110 of 423 bases (26.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_10152_length_319_cov_19.686869:1-319 [pilon] Finished processing NODE_7904_length_423_cov_1.321192:1-423 [pilon] Processing NODE_14937_length_243_cov_6.319672:1-243 [pilon] NODE_7190_length_460_cov_18.079646:1-460 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 159, Coverage: 22, minDepth: 6 [pilon] Confirmed 424 of 460 bases (92.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7190_length_460_cov_18.079646:1-460 [pilon] Processing NODE_2840_length_903_cov_34.116368:1-903 [pilon] NODE_3037_length_866_cov_36.943624:1-866 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 653, Coverage: 84, minDepth: 21 [pilon] Confirmed 706 of 866 bases (81.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3037_length_866_cov_36.943624:1-866 [pilon] Processing NODE_7233_length_458_cov_31.994065:1-458 [pilon] NODE_13226_length_243_cov_20.885246:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13226_length_243_cov_20.885246:1-243 [pilon] Processing NODE_3455_length_791_cov_11.710448:1-791 [pilon] NODE_15226_length_142_cov_22.476190:1-142 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 5, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 142 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15226_length_142_cov_22.476190:1-142 [pilon] Processing NODE_6209_length_524_cov_0.595533:1-524 [pilon] NODE_779_length_1636_cov_2.281188:1-1636 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 89, Coverage: 7, minDepth: 5 [pilon] Confirmed 1137 of 1636 bases (69.50%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_779_length_1636_cov_2.281188:1-1636 [pilon] Processing NODE_13504_length_243_cov_18.336066:1-243 [pilon] NODE_983_length_1507_cov_12.523810:1-1507 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 445, Coverage: 26, minDepth: 7 [pilon] Confirmed 1017 of 1507 bases (67.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_983_length_1507_cov_12.523810:1-1507 [pilon] Processing NODE_6572_length_498_cov_40.978780:1-498 [pilon] NODE_14937_length_243_cov_6.319672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14937_length_243_cov_6.319672:1-243 [pilon] Processing NODE_11610_length_259_cov_30.913043:1-259 [pilon] NODE_10152_length_319_cov_19.686869:1-319 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 86, Coverage: 3, minDepth: 5 [pilon] Confirmed 115 of 319 bases (36.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10152_length_319_cov_19.686869:1-319 [pilon] Processing NODE_14880_length_243_cov_6.909836:1-243 [pilon] NODE_2840_length_903_cov_34.116368:1-903 log: [pilon] frags shovill.bam: coverage 75 [pilon] Total Reads: 595, Coverage: 75, minDepth: 19 [pilon] Confirmed 747 of 903 bases (82.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2840_length_903_cov_34.116368:1-903 [pilon] Processing NODE_706_length_1701_cov_2.570886:1-1701 [pilon] NODE_7233_length_458_cov_31.994065:1-458 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 221, Coverage: 33, minDepth: 8 [pilon] Confirmed 322 of 458 bases (70.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7233_length_458_cov_31.994065:1-458 [pilon] Processing NODE_8322_length_403_cov_24.716312:1-403 [pilon] NODE_6209_length_524_cov_0.595533:1-524 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 524 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6209_length_524_cov_0.595533:1-524 [pilon] Processing NODE_10400_length_309_cov_11.585106:1-309 [pilon] NODE_3455_length_791_cov_11.710448:1-791 log: [pilon] frags shovill.bam: coverage 12 [pilon] Total Reads: 185, Coverage: 12, minDepth: 5 [pilon] Confirmed 508 of 791 bases (64.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3455_length_791_cov_11.710448:1-791 [pilon] Processing NODE_4344_length_676_cov_26.410811:1-676 [pilon] NODE_13504_length_243_cov_18.336066:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 14, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13504_length_243_cov_18.336066:1-243 [pilon] Processing NODE_13374_length_243_cov_19.598361:1-243 [pilon] NODE_6572_length_498_cov_40.978780:1-498 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 366, Coverage: 34, minDepth: 9 [pilon] Confirmed 303 of 498 bases (60.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6572_length_498_cov_40.978780:1-498 [pilon] Processing NODE_12707_length_243_cov_26.114754:1-243 [pilon] NODE_11610_length_259_cov_30.913043:1-259 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 79, Coverage: 6, minDepth: 5 [pilon] Confirmed 149 of 259 bases (57.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11610_length_259_cov_30.913043:1-259 [pilon] Processing NODE_10087_length_321_cov_25.660000:1-321 [pilon] NODE_706_length_1701_cov_2.570886:1-1701 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 108, Coverage: 8, minDepth: 5 [pilon] Confirmed 1046 of 1701 bases (61.49%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_706_length_1701_cov_2.570886:1-1701 [pilon] Processing NODE_2345_length_1001_cov_23.137500:1-1001 [pilon] NODE_14880_length_243_cov_6.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14880_length_243_cov_6.909836:1-243 [pilon] Processing NODE_1125_length_1427_cov_19.274119:1-1427 [pilon] NODE_8322_length_403_cov_24.716312:1-403 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 159, Coverage: 19, minDepth: 5 [pilon] Confirmed 303 of 403 bases (75.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8322_length_403_cov_24.716312:1-403 [pilon] Processing NODE_11378_length_268_cov_9.857143:1-268 [pilon] NODE_10400_length_309_cov_11.585106:1-309 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 41, Coverage: 4, minDepth: 5 [pilon] Confirmed 133 of 309 bases (43.04%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10400_length_309_cov_11.585106:1-309 [pilon] Processing NODE_8295_length_405_cov_6.179577:1-405 [pilon] NODE_4344_length_676_cov_26.410811:1-676 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 323, Coverage: 41, minDepth: 10 [pilon] Confirmed 639 of 676 bases (94.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4344_length_676_cov_26.410811:1-676 [pilon] Processing NODE_10773_length_294_cov_20.473988:1-294 [pilon] NODE_13374_length_243_cov_19.598361:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 41, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13374_length_243_cov_19.598361:1-243 [pilon] Processing NODE_13926_length_243_cov_14.713115:1-243 [pilon] NODE_12707_length_243_cov_26.114754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 55, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12707_length_243_cov_26.114754:1-243 [pilon] Processing NODE_12869_length_243_cov_24.311475:1-243 [pilon] NODE_10087_length_321_cov_25.660000:1-321 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 82, Coverage: 4, minDepth: 5 [pilon] Confirmed 132 of 321 bases (41.12%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10087_length_321_cov_25.660000:1-321 [pilon] Processing NODE_12001_length_246_cov_18.152000:1-246 [pilon] NODE_1125_length_1427_cov_19.274119:1-1427 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 609, Coverage: 35, minDepth: 9 [pilon] Confirmed 1144 of 1427 bases (80.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1125_length_1427_cov_19.274119:1-1427 [pilon] Processing NODE_6545_length_500_cov_68.686016:1-500 [pilon] NODE_2345_length_1001_cov_23.137500:1-1001 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 470, Coverage: 53, minDepth: 13 [pilon] Confirmed 848 of 1001 bases (84.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2345_length_1001_cov_23.137500:1-1001 [pilon] Processing NODE_3432_length_794_cov_4.988113:1-794 [pilon] NODE_11378_length_268_cov_9.857143:1-268 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 268 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11378_length_268_cov_9.857143:1-268 [pilon] Processing NODE_5129_length_608_cov_0.710472:1-608 [pilon] NODE_8295_length_405_cov_6.179577:1-405 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 38, Coverage: 3, minDepth: 5 [pilon] Confirmed 129 of 405 bases (31.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8295_length_405_cov_6.179577:1-405 [pilon] Processing NODE_14091_length_243_cov_13.524590:1-243 [pilon] NODE_10773_length_294_cov_20.473988:1-294 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 62, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 294 bases (44.22%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10773_length_294_cov_20.473988:1-294 [pilon] Processing NODE_4264_length_686_cov_5.097345:1-686 [pilon] NODE_13926_length_243_cov_14.713115:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13926_length_243_cov_14.713115:1-243 [pilon] Processing NODE_10578_length_302_cov_18.176796:1-302 [pilon] NODE_12869_length_243_cov_24.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 40, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12869_length_243_cov_24.311475:1-243 [pilon] Processing NODE_6048_length_536_cov_4.026506:1-536 [pilon] NODE_12001_length_246_cov_18.152000:1-246 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 54, Coverage: 5, minDepth: 5 [pilon] Confirmed 130 of 246 bases (52.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12001_length_246_cov_18.152000:1-246 [pilon] Processing NODE_14263_length_243_cov_12.106557:1-243 [pilon] NODE_6545_length_500_cov_68.686016:1-500 log: [pilon] frags shovill.bam: coverage 102 [pilon] Total Reads: 600, Coverage: 102, minDepth: 26 [pilon] Confirmed 432 of 500 bases (86.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6545_length_500_cov_68.686016:1-500 [pilon] Processing NODE_5008_length_618_cov_1.050302:1-618 [pilon] NODE_3432_length_794_cov_4.988113:1-794 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 107, Coverage: 9, minDepth: 5 [pilon] Confirmed 583 of 794 bases (73.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3432_length_794_cov_4.988113:1-794 [pilon] Processing NODE_668_length_1730_cov_23.631448:1-1730 [pilon] NODE_5129_length_608_cov_0.710472:1-608 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 18, Coverage: 3, minDepth: 5 [pilon] Confirmed 132 of 608 bases (21.71%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5129_length_608_cov_0.710472:1-608 [pilon] Processing NODE_4850_length_631_cov_1.733333:1-631 [pilon] NODE_14091_length_243_cov_13.524590:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14091_length_243_cov_13.524590:1-243 [pilon] Processing NODE_2872_length_899_cov_1.028278:1-899 [pilon] NODE_10578_length_302_cov_18.176796:1-302 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 57, Coverage: 6, minDepth: 5 [pilon] Confirmed 173 of 302 bases (57.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10578_length_302_cov_18.176796:1-302 [pilon] Processing NODE_8054_length_415_cov_17.591837:1-415 [pilon] NODE_4264_length_686_cov_5.097345:1-686 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 76, Coverage: 14, minDepth: 5 [pilon] Confirmed 550 of 686 bases (80.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4264_length_686_cov_5.097345:1-686 [pilon] Processing NODE_1062_length_1459_cov_16.345291:1-1459 [pilon] NODE_6048_length_536_cov_4.026506:1-536 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 48, Coverage: 10, minDepth: 5 [pilon] Confirmed 358 of 536 bases (66.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6048_length_536_cov_4.026506:1-536 [pilon] Processing NODE_7069_length_467_cov_2.537572:1-467 [pilon] NODE_14263_length_243_cov_12.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14263_length_243_cov_12.106557:1-243 [pilon] Processing NODE_2170_length_1041_cov_2.513043:1-1041 [pilon] NODE_5008_length_618_cov_1.050302:1-618 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 119 of 618 bases (19.26%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5008_length_618_cov_1.050302:1-618 [pilon] Processing NODE_8031_length_417_cov_10.861486:1-417 [pilon] NODE_668_length_1730_cov_23.631448:1-1730 log: [pilon] frags shovill.bam: coverage 41 [pilon] Total Reads: 943, Coverage: 41, minDepth: 10 [pilon] Confirmed 1446 of 1730 bases (83.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_668_length_1730_cov_23.631448:1-1730 [pilon] Processing NODE_9123_length_360_cov_22.389121:1-360 [pilon] NODE_4850_length_631_cov_1.733333:1-631 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 20, Coverage: 4, minDepth: 5 [pilon] Confirmed 215 of 631 bases (34.07%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4850_length_631_cov_1.733333:1-631 [pilon] Processing NODE_4560_length_657_cov_1.259328:1-657 [pilon] NODE_2872_length_899_cov_1.028278:1-899 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 22, Coverage: 3, minDepth: 5 [pilon] Confirmed 188 of 899 bases (20.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2872_length_899_cov_1.028278:1-899 [pilon] Processing NODE_2879_length_897_cov_1.368557:1-897 [pilon] NODE_7069_length_467_cov_2.537572:1-467 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 30, Coverage: 8, minDepth: 5 [pilon] Confirmed 350 of 467 bases (74.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7069_length_467_cov_2.537572:1-467 [pilon] Processing NODE_12582_length_243_cov_27.729508:1-243 [pilon] NODE_8054_length_415_cov_17.591837:1-415 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 110, Coverage: 16, minDepth: 5 [pilon] Confirmed 304 of 415 bases (73.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8054_length_415_cov_17.591837:1-415 [pilon] Processing NODE_984_length_1507_cov_3.275613:1-1507 [pilon] NODE_1062_length_1459_cov_16.345291:1-1459 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 482, Coverage: 33, minDepth: 8 [pilon] Confirmed 1237 of 1459 bases (84.78%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1062_length_1459_cov_16.345291:1-1459 [pilon] Processing NODE_15119_length_212_cov_3.450549:1-212 [pilon] NODE_8031_length_417_cov_10.861486:1-417 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 80, Coverage: 8, minDepth: 5 [pilon] Confirmed 285 of 417 bases (68.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8031_length_417_cov_10.861486:1-417 [pilon] Processing NODE_363_length_2106_cov_31.396474:1-2106 [pilon] NODE_2170_length_1041_cov_2.513043:1-1041 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 61, Coverage: 7, minDepth: 5 [pilon] Confirmed 766 of 1041 bases (73.58%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2170_length_1041_cov_2.513043:1-1041 [pilon] Processing NODE_4016_length_714_cov_5.057336:1-714 [pilon] NODE_9123_length_360_cov_22.389121:1-360 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 116, Coverage: 14, minDepth: 5 [pilon] Confirmed 238 of 360 bases (66.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9123_length_360_cov_22.389121:1-360 [pilon] Processing NODE_15267_length_122_cov_124.000000:1-122 [pilon] NODE_4560_length_657_cov_1.259328:1-657 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 24, Coverage: 4, minDepth: 5 [pilon] Confirmed 309 of 657 bases (47.03%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4560_length_657_cov_1.259328:1-657 [pilon] Processing NODE_15245_length_129_cov_1.000000:1-129 [pilon] NODE_12582_length_243_cov_27.729508:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12582_length_243_cov_27.729508:1-243 [pilon] Processing NODE_12511_length_243_cov_28.901639:1-243 [pilon] NODE_2879_length_897_cov_1.368557:1-897 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 35, Coverage: 5, minDepth: 5 [pilon] Confirmed 359 of 897 bases (40.02%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2879_length_897_cov_1.368557:1-897 [pilon] Processing NODE_1502_length_1258_cov_1.085312:1-1258 [pilon] NODE_15119_length_212_cov_3.450549:1-212 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 9, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 212 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15119_length_212_cov_3.450549:1-212 [pilon] Processing NODE_13868_length_243_cov_15.155738:1-243 [pilon] NODE_984_length_1507_cov_3.275613:1-1507 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 121, Coverage: 10, minDepth: 5 [pilon] Confirmed 1168 of 1507 bases (77.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_984_length_1507_cov_3.275613:1-1507 [pilon] Processing NODE_11138_length_279_cov_5.158228:1-279 [pilon] NODE_4016_length_714_cov_5.057336:1-714 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 62, Coverage: 11, minDepth: 5 [pilon] Confirmed 510 of 714 bases (71.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4016_length_714_cov_5.057336:1-714 [pilon] Processing NODE_14850_length_243_cov_7.180328:1-243 [pilon] NODE_363_length_2106_cov_31.396474:1-2106 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 1490, Coverage: 53, minDepth: 13 [pilon] Confirmed 1856 of 2106 bases (88.13%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_363_length_2106_cov_31.396474:1-2106 [pilon] Processing NODE_4778_length_637_cov_1.779070:1-637 [pilon] NODE_15267_length_122_cov_124.000000:1-122 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 122 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15267_length_122_cov_124.000000:1-122 [pilon] Processing NODE_1720_length_1173_cov_39.631179:1-1173 [pilon] NODE_12511_length_243_cov_28.901639:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12511_length_243_cov_28.901639:1-243 [pilon] Processing NODE_14986_length_243_cov_5.614754:1-243 [pilon] NODE_15245_length_129_cov_1.000000:1-129 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 0, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 129 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15245_length_129_cov_1.000000:1-129 [pilon] Processing NODE_9997_length_326_cov_6.970732:1-326 [pilon] NODE_1502_length_1258_cov_1.085312:1-1258 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 47, Coverage: 5, minDepth: 5 [pilon] Confirmed 694 of 1258 bases (55.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1502_length_1258_cov_1.085312:1-1258 [pilon] Processing NODE_1696_length_1181_cov_23.045283:1-1181 [pilon] NODE_4778_length_637_cov_1.779070:1-637 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 26, Coverage: 5, minDepth: 5 [pilon] Confirmed 334 of 637 bases (52.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4778_length_637_cov_1.779070:1-637 [pilon] Processing NODE_11931_length_249_cov_6.351562:1-249 [pilon] NODE_14850_length_243_cov_7.180328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 12, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14850_length_243_cov_7.180328:1-243 [pilon] Processing NODE_8941_length_369_cov_17.455645:1-369 [pilon] NODE_11138_length_279_cov_5.158228:1-279 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 15, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 279 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11138_length_279_cov_5.158228:1-279 [pilon] NODE_13868_length_243_cov_15.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Processing NODE_11589_length_261_cov_12.714286:1-261 [pilon] Finished processing NODE_13868_length_243_cov_15.155738:1-243 [pilon] Processing NODE_9695_length_338_cov_50.138249:1-338 [pilon] NODE_14986_length_243_cov_5.614754:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14986_length_243_cov_5.614754:1-243 [pilon] Processing NODE_10318_length_312_cov_24.921466:1-312 [pilon] NODE_9997_length_326_cov_6.970732:1-326 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 31, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 326 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9997_length_326_cov_6.970732:1-326 [pilon] Processing NODE_830_length_1611_cov_2.648993:1-1611 [pilon] NODE_1720_length_1173_cov_39.631179:1-1173 log: [pilon] frags shovill.bam: coverage 84 [pilon] Total Reads: 933, Coverage: 84, minDepth: 21 [pilon] Confirmed 1013 of 1173 bases (86.36%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1720_length_1173_cov_39.631179:1-1173 [pilon] Processing NODE_8109_length_413_cov_2.945205:1-413 [pilon] NODE_11931_length_249_cov_6.351562:1-249 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 249 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11931_length_249_cov_6.351562:1-249 [pilon] Processing NODE_13608_length_243_cov_17.409836:1-243 [pilon] NODE_8941_length_369_cov_17.455645:1-369 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 101, Coverage: 7, minDepth: 5 [pilon] Confirmed 199 of 369 bases (53.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8941_length_369_cov_17.455645:1-369 [pilon] Processing NODE_9981_length_327_cov_7.893204:1-327 [pilon] NODE_11589_length_261_cov_12.714286:1-261 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 44, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 261 bases (49.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11589_length_261_cov_12.714286:1-261 [pilon] Processing NODE_13117_length_243_cov_21.819672:1-243 [pilon] NODE_1696_length_1181_cov_23.045283:1-1181 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 561, Coverage: 42, minDepth: 11 [pilon] Confirmed 1030 of 1181 bases (87.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1696_length_1181_cov_23.045283:1-1181 [pilon] Processing NODE_2060_length_1069_cov_55.856540:1-1069 [pilon] NODE_9695_length_338_cov_50.138249:1-338 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 237, Coverage: 32, minDepth: 8 [pilon] Confirmed 304 of 338 bases (89.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9695_length_338_cov_50.138249:1-338 [pilon] Processing NODE_6868_length_480_cov_2.523677:1-480 [pilon] NODE_10318_length_312_cov_24.921466:1-312 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 115, Coverage: 10, minDepth: 5 [pilon] Confirmed 243 of 312 bases (77.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10318_length_312_cov_24.921466:1-312 [pilon] Processing NODE_11598_length_261_cov_5.021429:1-261 [pilon] NODE_8109_length_413_cov_2.945205:1-413 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 180 of 413 bases (43.58%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8109_length_413_cov_2.945205:1-413 [pilon] Processing NODE_5159_length_605_cov_10.766529:1-605 [pilon] NODE_830_length_1611_cov_2.648993:1-1611 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 115, Coverage: 9, minDepth: 5 [pilon] Confirmed 1451 of 1611 bases (90.07%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_830_length_1611_cov_2.648993:1-1611 [pilon] Processing NODE_9602_length_342_cov_11.411765:1-342 [pilon] NODE_13608_length_243_cov_17.409836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13608_length_243_cov_17.409836:1-243 [pilon] Processing NODE_3237_length_827_cov_11.664306:1-827 [pilon] NODE_9981_length_327_cov_7.893204:1-327 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 34, Coverage: 5, minDepth: 5 [pilon] Confirmed 180 of 327 bases (55.05%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9981_length_327_cov_7.893204:1-327 [pilon] Processing NODE_4013_length_714_cov_17.669477:1-714 [pilon] NODE_13117_length_243_cov_21.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13117_length_243_cov_21.819672:1-243 [pilon] Processing NODE_34_length_4437_cov_3.192771:1-4437 [pilon] NODE_2060_length_1069_cov_55.856540:1-1069 log: [pilon] frags shovill.bam: coverage 129 [pilon] Total Reads: 1193, Coverage: 129, minDepth: 32 [pilon] Confirmed 901 of 1069 bases (84.28%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2060_length_1069_cov_55.856540:1-1069 [pilon] Processing NODE_5241_length_597_cov_14.661765:1-597 [pilon] NODE_6868_length_480_cov_2.523677:1-480 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 22, Coverage: 6, minDepth: 5 [pilon] Confirmed 307 of 480 bases (63.96%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6868_length_480_cov_2.523677:1-480 [pilon] Processing NODE_1374_length_1309_cov_1.377946:1-1309 [pilon] NODE_11598_length_261_cov_5.021429:1-261 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 18, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 261 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11598_length_261_cov_5.021429:1-261 [pilon] Processing NODE_2719_length_925_cov_26.427861:1-925 [pilon] NODE_9602_length_342_cov_11.411765:1-342 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 51, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 342 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9602_length_342_cov_11.411765:1-342 [pilon] Processing NODE_11026_length_282_cov_20.571429:1-282 [pilon] NODE_5159_length_605_cov_10.766529:1-605 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 120, Coverage: 23, minDepth: 6 [pilon] Confirmed 498 of 605 bases (82.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5159_length_605_cov_10.766529:1-605 [pilon] Processing NODE_1026_length_1482_cov_16.453343:1-1482 [pilon] NODE_4013_length_714_cov_17.669477:1-714 log: [pilon] frags shovill.bam: coverage 36 [pilon] Total Reads: 226, Coverage: 36, minDepth: 9 [pilon] Confirmed 576 of 714 bases (80.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4013_length_714_cov_17.669477:1-714 [pilon] Processing NODE_1917_length_1107_cov_13.693712:1-1107 [pilon] NODE_3237_length_827_cov_11.664306:1-827 log: [pilon] frags shovill.bam: coverage 24 [pilon] Total Reads: 219, Coverage: 24, minDepth: 6 [pilon] Confirmed 707 of 827 bases (85.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3237_length_827_cov_11.664306:1-827 [pilon] Processing NODE_961_length_1518_cov_28.201861:1-1518 [pilon] NODE_5241_length_597_cov_14.661765:1-597 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 161, Coverage: 26, minDepth: 7 [pilon] Confirmed 492 of 597 bases (82.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5241_length_597_cov_14.661765:1-597 [pilon] Processing NODE_13894_length_243_cov_14.959016:1-243 [pilon] NODE_1374_length_1309_cov_1.377946:1-1309 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 68, Coverage: 7, minDepth: 5 [pilon] Confirmed 792 of 1309 bases (60.50%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1374_length_1309_cov_1.377946:1-1309 [pilon] Processing NODE_2202_length_1033_cov_8.756579:1-1033 [pilon] NODE_34_length_4437_cov_3.192771:1-4437 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 376, Coverage: 11, minDepth: 5 [pilon] Confirmed 3678 of 4437 bases (82.89%) [pilon] Corrected 10 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_34_length_4437_cov_3.192771:1-4437 [pilon] Processing NODE_5755_length_559_cov_17.013699:1-559 [pilon] NODE_2719_length_925_cov_26.427861:1-925 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 502, Coverage: 59, minDepth: 15 [pilon] Confirmed 769 of 925 bases (83.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2719_length_925_cov_26.427861:1-925 [pilon] Processing NODE_11475_length_264_cov_18.000000:1-264 [pilon] NODE_11026_length_282_cov_20.571429:1-282 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 55, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 282 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11026_length_282_cov_20.571429:1-282 [pilon] Processing NODE_12980_length_243_cov_23.155738:1-243 [pilon] NODE_1917_length_1107_cov_13.693712:1-1107 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 410, Coverage: 44, minDepth: 11 [pilon] Confirmed 945 of 1107 bases (85.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1917_length_1107_cov_13.693712:1-1107 [pilon] Processing NODE_8261_length_406_cov_1.098246:1-406 [pilon] NODE_961_length_1518_cov_28.201861:1-1518 log: [pilon] frags shovill.bam: coverage 69 [pilon] Total Reads: 860, Coverage: 69, minDepth: 17 [pilon] Confirmed 1233 of 1518 bases (81.23%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_961_length_1518_cov_28.201861:1-1518 [pilon] Processing NODE_12048_length_246_cov_5.264000:1-246 [pilon] NODE_1026_length_1482_cov_16.453343:1-1482 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 677, Coverage: 50, minDepth: 13 [pilon] Confirmed 1425 of 1482 bases (96.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1026_length_1482_cov_16.453343:1-1482 [pilon] Processing NODE_869_length_1583_cov_8.370041:1-1583 [pilon] NODE_13894_length_243_cov_14.959016:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13894_length_243_cov_14.959016:1-243 [pilon] Processing NODE_1565_length_1232_cov_16.137714:1-1232 [pilon] NODE_5755_length_559_cov_17.013699:1-559 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 179, Coverage: 22, minDepth: 6 [pilon] Confirmed 421 of 559 bases (75.31%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5755_length_559_cov_17.013699:1-559 [pilon] Processing NODE_7567_length_440_cov_2.965517:1-440 [pilon] NODE_2202_length_1033_cov_8.756579:1-1033 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 188, Coverage: 23, minDepth: 6 [pilon] Confirmed 952 of 1033 bases (92.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2202_length_1033_cov_8.756579:1-1033 [pilon] Processing NODE_10339_length_312_cov_13.649215:1-312 [pilon] NODE_11475_length_264_cov_18.000000:1-264 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 48, Coverage: 7, minDepth: 5 [pilon] Confirmed 195 of 264 bases (73.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11475_length_264_cov_18.000000:1-264 [pilon] Processing NODE_10367_length_310_cov_13.883598:1-310 [pilon] NODE_8261_length_406_cov_1.098246:1-406 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 9, Coverage: 3, minDepth: 5 [pilon] Confirmed 76 of 406 bases (18.72%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8261_length_406_cov_1.098246:1-406 [pilon] Processing NODE_10130_length_321_cov_5.635000:1-321 [pilon] NODE_12048_length_246_cov_5.264000:1-246 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 246 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12048_length_246_cov_5.264000:1-246 [pilon] Processing NODE_1050_length_1468_cov_1.260579:1-1468 [pilon] NODE_12980_length_243_cov_23.155738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 60, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12980_length_243_cov_23.155738:1-243 [pilon] Processing NODE_2935_length_884_cov_28.486239:1-884 [pilon] NODE_869_length_1583_cov_8.370041:1-1583 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 330, Coverage: 19, minDepth: 5 [pilon] Confirmed 1348 of 1583 bases (85.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_869_length_1583_cov_8.370041:1-1583 [pilon] Processing NODE_7957_length_420_cov_12.662207:1-420 [pilon] NODE_1565_length_1232_cov_16.137714:1-1232 log: [pilon] frags shovill.bam: coverage 37 [pilon] Total Reads: 465, Coverage: 37, minDepth: 9 [pilon] Confirmed 1028 of 1232 bases (83.44%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1565_length_1232_cov_16.137714:1-1232 [pilon] Processing NODE_13473_length_243_cov_18.655738:1-243 [pilon] NODE_7567_length_440_cov_2.965517:1-440 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 440 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7567_length_440_cov_2.965517:1-440 [pilon] Processing NODE_1040_length_1473_cov_25.276627:1-1473 [pilon] NODE_10367_length_310_cov_13.883598:1-310 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 49, Coverage: 4, minDepth: 5 [pilon] Confirmed 130 of 310 bases (41.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10367_length_310_cov_13.883598:1-310 [pilon] Processing NODE_8539_length_392_cov_14.804428:1-392 [pilon] NODE_10339_length_312_cov_13.649215:1-312 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 44, Coverage: 3, minDepth: 5 [pilon] Confirmed 91 of 312 bases (29.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10339_length_312_cov_13.649215:1-312 [pilon] Processing NODE_7942_length_420_cov_28.655518:1-420 [pilon] NODE_1050_length_1468_cov_1.260579:1-1468 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 64, Coverage: 5, minDepth: 5 [pilon] Confirmed 969 of 1468 bases (66.01%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1050_length_1468_cov_1.260579:1-1468 [pilon] Processing NODE_9969_length_327_cov_15.936893:1-327 [pilon] NODE_10130_length_321_cov_5.635000:1-321 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 27, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 321 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10130_length_321_cov_5.635000:1-321 [pilon] Processing NODE_9077_length_363_cov_14.322314:1-363 [pilon] NODE_2935_length_884_cov_28.486239:1-884 log: [pilon] frags shovill.bam: coverage 53 [pilon] Total Reads: 502, Coverage: 53, minDepth: 13 [pilon] Confirmed 809 of 884 bases (91.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2935_length_884_cov_28.486239:1-884 [pilon] Processing NODE_9358_length_351_cov_29.673913:1-351 [pilon] NODE_7957_length_420_cov_12.662207:1-420 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 87, Coverage: 11, minDepth: 5 [pilon] Confirmed 299 of 420 bases (71.19%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7957_length_420_cov_12.662207:1-420 [pilon] Processing NODE_14984_length_243_cov_5.647541:1-243 [pilon] NODE_13473_length_243_cov_18.655738:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13473_length_243_cov_18.655738:1-243 [pilon] Processing NODE_9397_length_350_cov_41.528384:1-350 [pilon] NODE_8539_length_392_cov_14.804428:1-392 log: [pilon] frags shovill.bam: coverage 15 [pilon] Total Reads: 98, Coverage: 15, minDepth: 5 [pilon] Confirmed 313 of 392 bases (79.85%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8539_length_392_cov_14.804428:1-392 [pilon] Processing NODE_9036_length_364_cov_48.255144:1-364 [pilon] NODE_1040_length_1473_cov_25.276627:1-1473 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 862, Coverage: 46, minDepth: 12 [pilon] Confirmed 1318 of 1473 bases (89.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1040_length_1473_cov_25.276627:1-1473 [pilon] Processing NODE_1150_length_1418_cov_1.178874:1-1418 [pilon] NODE_7942_length_420_cov_28.655518:1-420 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 187, Coverage: 30, minDepth: 8 [pilon] Confirmed 296 of 420 bases (70.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7942_length_420_cov_28.655518:1-420 [pilon] Processing NODE_5910_length_547_cov_5.441315:1-547 [pilon] NODE_9969_length_327_cov_15.936893:1-327 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 47, Coverage: 2, minDepth: 5 [pilon] Confirmed 76 of 327 bases (23.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9969_length_327_cov_15.936893:1-327 [pilon] Processing NODE_14607_length_243_cov_9.344262:1-243 [pilon] NODE_9077_length_363_cov_14.322314:1-363 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 83, Coverage: 13, minDepth: 5 [pilon] Confirmed 281 of 363 bases (77.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9077_length_363_cov_14.322314:1-363 [pilon] Processing NODE_13696_length_243_cov_16.434426:1-243 [pilon] NODE_9358_length_351_cov_29.673913:1-351 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 148, Coverage: 13, minDepth: 5 [pilon] Confirmed 249 of 351 bases (70.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9358_length_351_cov_29.673913:1-351 [pilon] Processing NODE_2511_length_965_cov_11.170616:1-965 [pilon] NODE_14984_length_243_cov_5.647541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14984_length_243_cov_5.647541:1-243 [pilon] Processing NODE_4682_length_645_cov_3.074427:1-645 [pilon] NODE_9397_length_350_cov_41.528384:1-350 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 194, Coverage: 7, minDepth: 5 [pilon] Confirmed 150 of 350 bases (42.86%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9397_length_350_cov_41.528384:1-350 [pilon] Processing NODE_13741_length_243_cov_16.106557:1-243 [pilon] NODE_9036_length_364_cov_48.255144:1-364 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 264, Coverage: 60, minDepth: 15 [pilon] Confirmed 322 of 364 bases (88.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9036_length_364_cov_48.255144:1-364 [pilon] Processing NODE_4516_length_660_cov_14.782931:1-660 [pilon] NODE_1150_length_1418_cov_1.178874:1-1418 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 40, Coverage: 4, minDepth: 5 [pilon] Confirmed 453 of 1418 bases (31.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1150_length_1418_cov_1.178874:1-1418 [pilon] Processing NODE_999_length_1495_cov_18.762737:1-1495 [pilon] NODE_5910_length_547_cov_5.441315:1-547 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 65, Coverage: 8, minDepth: 5 [pilon] Confirmed 317 of 547 bases (57.95%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5910_length_547_cov_5.441315:1-547 [pilon] Processing NODE_11437_length_266_cov_15.434483:1-266 [pilon] NODE_14607_length_243_cov_9.344262:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 27, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14607_length_243_cov_9.344262:1-243 [pilon] Processing NODE_13082_length_243_cov_22.106557:1-243 [pilon] NODE_13696_length_243_cov_16.434426:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 23, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13696_length_243_cov_16.434426:1-243 [pilon] Processing NODE_2051_length_1071_cov_24.371579:1-1071 [pilon] NODE_2511_length_965_cov_11.170616:1-965 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 213, Coverage: 29, minDepth: 7 [pilon] Confirmed 814 of 965 bases (84.35%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2511_length_965_cov_11.170616:1-965 [pilon] Processing NODE_9568_length_342_cov_32.506787:1-342 [pilon] NODE_4682_length_645_cov_3.074427:1-645 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 54, Coverage: 10, minDepth: 5 [pilon] Confirmed 485 of 645 bases (75.19%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4682_length_645_cov_3.074427:1-645 [pilon] Processing NODE_3758_length_746_cov_18.753600:1-746 [pilon] NODE_13741_length_243_cov_16.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 21, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13741_length_243_cov_16.106557:1-243 [pilon] Processing NODE_2606_length_945_cov_1.405340:1-945 [pilon] NODE_4516_length_660_cov_14.782931:1-660 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 211, Coverage: 31, minDepth: 8 [pilon] Confirmed 535 of 660 bases (81.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4516_length_660_cov_14.782931:1-660 [pilon] Processing NODE_4836_length_632_cov_1.168297:1-632 [pilon] NODE_999_length_1495_cov_18.762737:1-1495 log: [pilon] frags shovill.bam: coverage 48 [pilon] Total Reads: 679, Coverage: 48, minDepth: 12 [pilon] Confirmed 1365 of 1495 bases (91.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_999_length_1495_cov_18.762737:1-1495 [pilon] Processing NODE_3579_length_772_cov_31.250384:1-772 [pilon] NODE_11437_length_266_cov_15.434483:1-266 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 51, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 266 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11437_length_266_cov_15.434483:1-266 [pilon] Processing NODE_14095_length_243_cov_13.491803:1-243 [pilon] NODE_13082_length_243_cov_22.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13082_length_243_cov_22.106557:1-243 [pilon] Processing NODE_13566_length_243_cov_17.762295:1-243 [pilon] NODE_2051_length_1071_cov_24.371579:1-1071 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 496, Coverage: 49, minDepth: 12 [pilon] Confirmed 929 of 1071 bases (86.74%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2051_length_1071_cov_24.371579:1-1071 [pilon] Processing NODE_6236_length_522_cov_10.817955:1-522 [pilon] NODE_9568_length_342_cov_32.506787:1-342 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 81, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 342 bases (38.01%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9568_length_342_cov_32.506787:1-342 [pilon] Processing NODE_11955_length_247_cov_10.492063:1-247 [pilon] NODE_3758_length_746_cov_18.753600:1-746 log: [pilon] frags shovill.bam: coverage 38 [pilon] Total Reads: 314, Coverage: 38, minDepth: 10 [pilon] Confirmed 542 of 746 bases (72.65%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3758_length_746_cov_18.753600:1-746 [pilon] Processing NODE_1996_length_1088_cov_1.315408:1-1088 [pilon] NODE_4836_length_632_cov_1.168297:1-632 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 22, Coverage: 4, minDepth: 5 [pilon] Confirmed 198 of 632 bases (31.33%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4836_length_632_cov_1.168297:1-632 [pilon] NODE_2606_length_945_cov_1.405340:1-945 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 40, Coverage: 6, minDepth: 5 [pilon] Confirmed 561 of 945 bases (59.37%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2606_length_945_cov_1.405340:1-945 [pilon] Processing NODE_94_length_3065_cov_20.205842:1-3065 [pilon] Processing NODE_14394_length_243_cov_11.106557:1-243 [pilon] NODE_14095_length_243_cov_13.491803:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14095_length_243_cov_13.491803:1-243 [pilon] Processing NODE_8125_length_412_cov_1.144330:1-412 [pilon] NODE_13566_length_243_cov_17.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13566_length_243_cov_17.762295:1-243 [pilon] Processing NODE_719_length_1689_cov_13.121811:1-1689 [pilon] NODE_3579_length_772_cov_31.250384:1-772 log: [pilon] frags shovill.bam: coverage 47 [pilon] Total Reads: 473, Coverage: 47, minDepth: 12 [pilon] Confirmed 609 of 772 bases (78.89%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3579_length_772_cov_31.250384:1-772 [pilon] Processing NODE_402_length_2045_cov_1.426195:1-2045 [pilon] NODE_6236_length_522_cov_10.817955:1-522 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 94, Coverage: 14, minDepth: 5 [pilon] Confirmed 339 of 522 bases (64.94%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6236_length_522_cov_10.817955:1-522 [pilon] Processing NODE_14944_length_243_cov_6.221311:1-243 [pilon] NODE_11955_length_247_cov_10.492063:1-247 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 31, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 247 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11955_length_247_cov_10.492063:1-247 [pilon] Processing NODE_2346_length_1001_cov_22.434091:1-1001 [pilon] NODE_1996_length_1088_cov_1.315408:1-1088 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 41, Coverage: 5, minDepth: 5 [pilon] Confirmed 512 of 1088 bases (47.06%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1996_length_1088_cov_1.315408:1-1088 [pilon] Processing NODE_2731_length_922_cov_25.421973:1-922 [pilon] NODE_14394_length_243_cov_11.106557:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 17, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14394_length_243_cov_11.106557:1-243 [pilon] Processing NODE_3695_length_755_cov_13.264984:1-755 [pilon] NODE_94_length_3065_cov_20.205842:1-3065 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 1577, Coverage: 40, minDepth: 10 [pilon] Confirmed 2290 of 3065 bases (74.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_94_length_3065_cov_20.205842:1-3065 [pilon] Processing NODE_4446_length_666_cov_17.060550:1-666 [pilon] NODE_8125_length_412_cov_1.144330:1-412 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 7, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 412 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8125_length_412_cov_1.144330:1-412 [pilon] Processing NODE_7530_length_442_cov_0.912773:1-442 [pilon] NODE_402_length_2045_cov_1.426195:1-2045 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 93, Coverage: 6, minDepth: 5 [pilon] Confirmed 1159 of 2045 bases (56.67%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_402_length_2045_cov_1.426195:1-2045 [pilon] Processing NODE_1029_length_1481_cov_27.687500:1-1481 [pilon] NODE_719_length_1689_cov_13.121811:1-1689 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 548, Coverage: 31, minDepth: 8 [pilon] Confirmed 1581 of 1689 bases (93.61%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_719_length_1689_cov_13.121811:1-1689 [pilon] Processing NODE_10351_length_311_cov_28.989474:1-311 [pilon] NODE_14944_length_243_cov_6.221311:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 16, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14944_length_243_cov_6.221311:1-243 [pilon] Processing NODE_8478_length_395_cov_24.145985:1-395 [pilon] NODE_2346_length_1001_cov_22.434091:1-1001 log: [pilon] frags shovill.bam: coverage 43 [pilon] Total Reads: 471, Coverage: 43, minDepth: 11 [pilon] Confirmed 940 of 1001 bases (93.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2346_length_1001_cov_22.434091:1-1001 [pilon] Processing NODE_6171_length_527_cov_0.990148:1-527 [pilon] NODE_2731_length_922_cov_25.421973:1-922 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 478, Coverage: 58, minDepth: 15 [pilon] Confirmed 732 of 922 bases (79.39%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2731_length_922_cov_25.421973:1-922 [pilon] Processing NODE_1832_length_1134_cov_15.560711:1-1134 [pilon] NODE_3695_length_755_cov_13.264984:1-755 log: [pilon] frags shovill.bam: coverage 30 [pilon] Total Reads: 183, Coverage: 30, minDepth: 8 [pilon] Confirmed 622 of 755 bases (82.38%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3695_length_755_cov_13.264984:1-755 [pilon] Processing NODE_14342_length_243_cov_11.516393:1-243 [pilon] NODE_4446_length_666_cov_17.060550:1-666 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 200, Coverage: 25, minDepth: 6 [pilon] Confirmed 494 of 666 bases (74.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4446_length_666_cov_17.060550:1-666 [pilon] Processing NODE_7784_length_428_cov_35.429967:1-428 [pilon] NODE_7530_length_442_cov_0.912773:1-442 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 12, Coverage: 2, minDepth: 5 [pilon] Confirmed 66 of 442 bases (14.93%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7530_length_442_cov_0.912773:1-442 [pilon] Processing NODE_11518_length_263_cov_16.739437:1-263 [pilon] NODE_10351_length_311_cov_28.989474:1-311 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 111, Coverage: 19, minDepth: 5 [pilon] Confirmed 281 of 311 bases (90.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10351_length_311_cov_28.989474:1-311 [pilon] Processing NODE_967_length_1515_cov_1.674319:1-1515 [pilon] NODE_1029_length_1481_cov_27.687500:1-1481 log: [pilon] frags shovill.bam: coverage 52 [pilon] Total Reads: 923, Coverage: 52, minDepth: 13 [pilon] Confirmed 1138 of 1481 bases (76.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1029_length_1481_cov_27.687500:1-1481 [pilon] Processing NODE_8379_length_401_cov_30.139286:1-401 [pilon] NODE_8478_length_395_cov_24.145985:1-395 log: [pilon] frags shovill.bam: coverage 26 [pilon] Total Reads: 155, Coverage: 26, minDepth: 7 [pilon] Confirmed 318 of 395 bases (80.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8478_length_395_cov_24.145985:1-395 [pilon] Processing NODE_12299_length_243_cov_33.172131:1-243 [pilon] NODE_14342_length_243_cov_11.516393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14342_length_243_cov_11.516393:1-243 [pilon] Processing NODE_4518_length_660_cov_9.894249:1-660 [pilon] NODE_6171_length_527_cov_0.990148:1-527 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 146 of 527 bases (27.70%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6171_length_527_cov_0.990148:1-527 [pilon] Processing NODE_5197_length_602_cov_8.149688:1-602 [pilon] NODE_1832_length_1134_cov_15.560711:1-1134 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 426, Coverage: 35, minDepth: 9 [pilon] Confirmed 1082 of 1134 bases (95.41%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1832_length_1134_cov_15.560711:1-1134 [pilon] Processing NODE_8851_length_374_cov_36.130435:1-374 [pilon] NODE_7784_length_428_cov_35.429967:1-428 log: [pilon] frags shovill.bam: coverage 39 [pilon] Total Reads: 247, Coverage: 39, minDepth: 10 [pilon] Confirmed 395 of 428 bases (92.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7784_length_428_cov_35.429967:1-428 [pilon] Processing NODE_6197_length_524_cov_21.220844:1-524 [pilon] NODE_967_length_1515_cov_1.674319:1-1515 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 72, Coverage: 6, minDepth: 5 [pilon] Confirmed 879 of 1515 bases (58.02%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_967_length_1515_cov_1.674319:1-1515 [pilon] Processing NODE_12833_length_243_cov_24.762295:1-243 [pilon] NODE_11518_length_263_cov_16.739437:1-263 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 55, Coverage: 7, minDepth: 5 [pilon] Confirmed 188 of 263 bases (71.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11518_length_263_cov_16.739437:1-263 [pilon] Processing NODE_629_length_1772_cov_19.472441:1-1772 [pilon] NODE_8379_length_401_cov_30.139286:1-401 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 194, Coverage: 29, minDepth: 7 [pilon] Confirmed 351 of 401 bases (87.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8379_length_401_cov_30.139286:1-401 [pilon] Processing NODE_9301_length_354_cov_15.107296:1-354 [pilon] NODE_12299_length_243_cov_33.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12299_length_243_cov_33.172131:1-243 [pilon] Processing NODE_5172_length_603_cov_49.076763:1-603 [pilon] NODE_4518_length_660_cov_9.894249:1-660 log: [pilon] frags shovill.bam: coverage 13 [pilon] Total Reads: 129, Coverage: 13, minDepth: 5 [pilon] Confirmed 484 of 660 bases (73.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4518_length_660_cov_9.894249:1-660 [pilon] Processing NODE_6948_length_474_cov_22.263456:1-474 [pilon] NODE_5197_length_602_cov_8.149688:1-602 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 93, Coverage: 11, minDepth: 5 [pilon] Confirmed 326 of 602 bases (54.15%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5197_length_602_cov_8.149688:1-602 [pilon] Processing NODE_5585_length_571_cov_32.035556:1-571 [pilon] NODE_8851_length_374_cov_36.130435:1-374 log: [pilon] frags shovill.bam: coverage 23 [pilon] Total Reads: 197, Coverage: 23, minDepth: 6 [pilon] Confirmed 246 of 374 bases (65.78%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8851_length_374_cov_36.130435:1-374 [pilon] Processing NODE_3429_length_794_cov_26.658247:1-794 [pilon] NODE_12833_length_243_cov_24.762295:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 38, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12833_length_243_cov_24.762295:1-243 [pilon] Processing NODE_8439_length_397_cov_24.594203:1-397 [pilon] NODE_6197_length_524_cov_21.220844:1-524 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 207, Coverage: 33, minDepth: 8 [pilon] Confirmed 484 of 524 bases (92.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6197_length_524_cov_21.220844:1-524 [pilon] NODE_629_length_1772_cov_19.472441:1-1772 log: [pilon] frags shovill.bam: coverage 42 [pilon] Total Reads: 824, Coverage: 42, minDepth: 11 [pilon] Confirmed 1636 of 1772 bases (92.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_629_length_1772_cov_19.472441:1-1772 [pilon] Processing NODE_11238_length_274_cov_7.555556:1-274 [pilon] NODE_9301_length_354_cov_15.107296:1-354 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 74, Coverage: 5, minDepth: 5 [pilon] Confirmed 146 of 354 bases (41.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9301_length_354_cov_15.107296:1-354 [pilon] Processing NODE_11282_length_273_cov_10.769737:1-273 [pilon] NODE_5172_length_603_cov_49.076763:1-603 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 605, Coverage: 44, minDepth: 11 [pilon] Confirmed 372 of 603 bases (61.69%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5172_length_603_cov_49.076763:1-603 [pilon] Processing NODE_6347_length_514_cov_2.198473:1-514 [pilon] NODE_6948_length_474_cov_22.263456:1-474 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 155, Coverage: 17, minDepth: 5 [pilon] Confirmed 295 of 474 bases (62.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6948_length_474_cov_22.263456:1-474 [pilon] Processing NODE_13375_length_243_cov_19.590164:1-243 [pilon] NODE_5585_length_571_cov_32.035556:1-571 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 311, Coverage: 45, minDepth: 11 [pilon] Confirmed 507 of 571 bases (88.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5585_length_571_cov_32.035556:1-571 [pilon] Processing NODE_12389_length_243_cov_31.311475:1-243 [pilon] NODE_3429_length_794_cov_26.658247:1-794 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 391, Coverage: 49, minDepth: 12 [pilon] Confirmed 503 of 794 bases (63.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3429_length_794_cov_26.658247:1-794 [pilon] Processing NODE_8094_length_414_cov_2.098976:1-414 [pilon] NODE_8439_length_397_cov_24.594203:1-397 log: [pilon] frags shovill.bam: coverage 25 [pilon] Total Reads: 162, Coverage: 25, minDepth: 6 [pilon] Confirmed 360 of 397 bases (90.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8439_length_397_cov_24.594203:1-397 [pilon] Processing NODE_6593_length_498_cov_0.517241:1-498 [pilon] NODE_11238_length_274_cov_7.555556:1-274 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 274 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11238_length_274_cov_7.555556:1-274 [pilon] Processing NODE_7678_length_434_cov_0.597444:1-434 [pilon] NODE_11282_length_273_cov_10.769737:1-273 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 42, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 273 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11282_length_273_cov_10.769737:1-273 [pilon] Processing NODE_12055_length_245_cov_24.701613:1-245 [pilon] NODE_6347_length_514_cov_2.198473:1-514 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 16, Coverage: 4, minDepth: 5 [pilon] Confirmed 232 of 514 bases (45.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6347_length_514_cov_2.198473:1-514 [pilon] Processing NODE_4302_length_681_cov_2.985714:1-681 [pilon] NODE_12389_length_243_cov_31.311475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 76, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12389_length_243_cov_31.311475:1-243 [pilon] Processing NODE_14324_length_243_cov_11.680328:1-243 [pilon] NODE_13375_length_243_cov_19.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 46, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13375_length_243_cov_19.590164:1-243 [pilon] Processing NODE_3157_length_841_cov_13.108333:1-841 [pilon] NODE_8094_length_414_cov_2.098976:1-414 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 24, Coverage: 5, minDepth: 5 [pilon] Confirmed 249 of 414 bases (60.14%) [pilon] Corrected 2 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8094_length_414_cov_2.098976:1-414 [pilon] Processing NODE_7071_length_467_cov_1.736994:1-467 [pilon] NODE_6593_length_498_cov_0.517241:1-498 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 8, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 498 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6593_length_498_cov_0.517241:1-498 [pilon] Processing NODE_8035_length_417_cov_0.868243:1-417 [pilon] NODE_7678_length_434_cov_0.597444:1-434 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 7, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 434 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7678_length_434_cov_0.597444:1-434 [pilon] Processing NODE_7310_length_453_cov_2.984940:1-453 [pilon] NODE_12055_length_245_cov_24.701613:1-245 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 73, Coverage: 7, minDepth: 5 [pilon] Confirmed 176 of 245 bases (71.84%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12055_length_245_cov_24.701613:1-245 [pilon] Processing NODE_10092_length_321_cov_22.835000:1-321 [pilon] NODE_8035_length_417_cov_0.868243:1-417 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 5, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 417 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8035_length_417_cov_0.868243:1-417 [pilon] Processing NODE_8890_length_372_cov_22.470120:1-372 [pilon] NODE_14324_length_243_cov_11.680328:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 35, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14324_length_243_cov_11.680328:1-243 [pilon] Processing NODE_7205_length_459_cov_66.721893:1-459 [pilon] NODE_4302_length_681_cov_2.985714:1-681 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 46, Coverage: 8, minDepth: 5 [pilon] Confirmed 458 of 681 bases (67.25%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4302_length_681_cov_2.985714:1-681 [pilon] Processing NODE_14742_length_243_cov_8.172131:1-243 [pilon] NODE_3157_length_841_cov_13.108333:1-841 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 211, Coverage: 32, minDepth: 8 [pilon] Confirmed 635 of 841 bases (75.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3157_length_841_cov_13.108333:1-841 [pilon] Processing NODE_8330_length_403_cov_2.787234:1-403 [pilon] NODE_7071_length_467_cov_1.736994:1-467 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 24, Coverage: 6, minDepth: 5 [pilon] Confirmed 304 of 467 bases (65.10%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7071_length_467_cov_1.736994:1-467 [pilon] Processing NODE_10729_length_297_cov_9.676136:1-297 [pilon] NODE_7310_length_453_cov_2.984940:1-453 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 31, Coverage: 7, minDepth: 5 [pilon] Confirmed 302 of 453 bases (66.67%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7310_length_453_cov_2.984940:1-453 [pilon] Processing NODE_1516_length_1252_cov_6.591512:1-1252 [pilon] NODE_10092_length_321_cov_22.835000:1-321 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 95, Coverage: 11, minDepth: 5 [pilon] Confirmed 240 of 321 bases (74.77%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10092_length_321_cov_22.835000:1-321 [pilon] Processing NODE_5752_length_559_cov_23.755708:1-559 [pilon] NODE_14742_length_243_cov_8.172131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 18, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14742_length_243_cov_8.172131:1-243 [pilon] NODE_8330_length_403_cov_2.787234:1-403 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 20, Coverage: 6, minDepth: 5 [pilon] Confirmed 272 of 403 bases (67.49%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8330_length_403_cov_2.787234:1-403 [pilon] Processing NODE_1547_length_1241_cov_33.745536:1-1241 [pilon] NODE_7205_length_459_cov_66.721893:1-459 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 498, Coverage: 80, minDepth: 20 [pilon] Confirmed 393 of 459 bases (85.62%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7205_length_459_cov_66.721893:1-459 [pilon] Processing NODE_3570_length_774_cov_15.442573:1-774 [pilon] NODE_8890_length_372_cov_22.470120:1-372 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 121, Coverage: 19, minDepth: 5 [pilon] Confirmed 322 of 372 bases (86.56%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8890_length_372_cov_22.470120:1-372 [pilon] Processing NODE_15020_length_243_cov_5.196721:1-243 [pilon] NODE_1516_length_1252_cov_6.591512:1-1252 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 179, Coverage: 10, minDepth: 5 [pilon] Confirmed 620 of 1252 bases (49.52%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1516_length_1252_cov_6.591512:1-1252 [pilon] Processing NODE_8883_length_372_cov_33.127490:1-372 [pilon] NODE_10729_length_297_cov_9.676136:1-297 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 37, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 297 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10729_length_297_cov_9.676136:1-297 [pilon] Processing NODE_13011_length_243_cov_22.786885:1-243 [pilon] NODE_5752_length_559_cov_23.755708:1-559 log: [pilon] frags shovill.bam: coverage 33 [pilon] Total Reads: 257, Coverage: 33, minDepth: 8 [pilon] Confirmed 350 of 559 bases (62.61%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5752_length_559_cov_23.755708:1-559 [pilon] Processing NODE_6610_length_497_cov_1.539894:1-497 [pilon] NODE_1547_length_1241_cov_33.745536:1-1241 log: [pilon] frags shovill.bam: coverage 68 [pilon] Total Reads: 892, Coverage: 68, minDepth: 17 [pilon] Confirmed 1081 of 1241 bases (87.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1547_length_1241_cov_33.745536:1-1241 [pilon] Processing NODE_8280_length_405_cov_19.274648:1-405 [pilon] NODE_15020_length_243_cov_5.196721:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 13, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15020_length_243_cov_5.196721:1-243 [pilon] Processing NODE_12977_length_243_cov_23.204918:1-243 [pilon] NODE_3570_length_774_cov_15.442573:1-774 log: [pilon] frags shovill.bam: coverage 28 [pilon] Total Reads: 233, Coverage: 28, minDepth: 7 [pilon] Confirmed 565 of 774 bases (73.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3570_length_774_cov_15.442573:1-774 [pilon] Processing NODE_12761_length_243_cov_25.450820:1-243 [pilon] NODE_13011_length_243_cov_22.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13011_length_243_cov_22.786885:1-243 [pilon] Processing NODE_11169_length_276_cov_30.348387:1-276 [pilon] NODE_8883_length_372_cov_33.127490:1-372 log: [pilon] frags shovill.bam: coverage 22 [pilon] Total Reads: 180, Coverage: 22, minDepth: 6 [pilon] Confirmed 274 of 372 bases (73.66%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8883_length_372_cov_33.127490:1-372 [pilon] Processing NODE_10251_length_315_cov_12.463918:1-315 [pilon] NODE_6610_length_497_cov_1.539894:1-497 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 18, Coverage: 5, minDepth: 5 [pilon] Confirmed 249 of 497 bases (50.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6610_length_497_cov_1.539894:1-497 [pilon] Processing NODE_2809_length_908_cov_5.956798:1-908 [pilon] NODE_12977_length_243_cov_23.204918:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 39, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12977_length_243_cov_23.204918:1-243 [pilon] Processing NODE_12754_length_243_cov_25.508197:1-243 [pilon] NODE_12761_length_243_cov_25.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12761_length_243_cov_25.450820:1-243 [pilon] Processing NODE_5419_length_582_cov_33.245119:1-582 [pilon] NODE_8280_length_405_cov_19.274648:1-405 log: [pilon] frags shovill.bam: coverage 19 [pilon] Total Reads: 116, Coverage: 19, minDepth: 5 [pilon] Confirmed 353 of 405 bases (87.16%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8280_length_405_cov_19.274648:1-405 [pilon] Processing NODE_6613_length_496_cov_32.168000:1-496 [pilon] NODE_10251_length_315_cov_12.463918:1-315 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 64, Coverage: 8, minDepth: 5 [pilon] Confirmed 206 of 315 bases (65.40%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10251_length_315_cov_12.463918:1-315 [pilon] Processing NODE_107_length_2943_cov_2.239901:1-2943 [pilon] NODE_11169_length_276_cov_30.348387:1-276 log: [pilon] frags shovill.bam: coverage 9 [pilon] Total Reads: 94, Coverage: 9, minDepth: 5 [pilon] Confirmed 194 of 276 bases (70.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11169_length_276_cov_30.348387:1-276 [pilon] Processing NODE_7985_length_419_cov_2.288591:1-419 [pilon] NODE_2809_length_908_cov_5.956798:1-908 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 151, Coverage: 11, minDepth: 5 [pilon] Confirmed 629 of 908 bases (69.27%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2809_length_908_cov_5.956798:1-908 [pilon] Processing NODE_9170_length_359_cov_7.802521:1-359 [pilon] NODE_12754_length_243_cov_25.508197:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 50, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12754_length_243_cov_25.508197:1-243 [pilon] Processing NODE_2112_length_1056_cov_1.022460:1-1056 [pilon] NODE_6613_length_496_cov_32.168000:1-496 log: [pilon] frags shovill.bam: coverage 60 [pilon] Total Reads: 297, Coverage: 60, minDepth: 15 [pilon] Confirmed 378 of 496 bases (76.21%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6613_length_496_cov_32.168000:1-496 [pilon] NODE_5419_length_582_cov_33.245119:1-582 log: [pilon] frags shovill.bam: coverage 34 [pilon] Total Reads: 433, Coverage: 34, minDepth: 9 [pilon] Confirmed 344 of 582 bases (59.11%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5419_length_582_cov_33.245119:1-582 [pilon] Processing NODE_13119_length_243_cov_21.811475:1-243 [pilon] NODE_7985_length_419_cov_2.288591:1-419 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 35, Coverage: 7, minDepth: 5 [pilon] Confirmed 291 of 419 bases (69.45%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7985_length_419_cov_2.288591:1-419 [pilon] Processing NODE_14560_length_243_cov_9.819672:1-243 [pilon] NODE_107_length_2943_cov_2.239901:1-2943 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 190, Coverage: 8, minDepth: 5 [pilon] Confirmed 2480 of 2943 bases (84.27%) [pilon] Corrected 6 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_107_length_2943_cov_2.239901:1-2943 [pilon] Processing NODE_10784_length_294_cov_15.208092:1-294 [pilon] NODE_9170_length_359_cov_7.802521:1-359 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 49, Coverage: 5, minDepth: 5 [pilon] Confirmed 186 of 359 bases (51.81%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9170_length_359_cov_7.802521:1-359 [pilon] Processing NODE_14249_length_243_cov_12.254098:1-243 [pilon] NODE_2112_length_1056_cov_1.022460:1-1056 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 40, Coverage: 5, minDepth: 5 [pilon] Confirmed 530 of 1056 bases (50.19%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2112_length_1056_cov_1.022460:1-1056 [pilon] Processing NODE_13728_length_243_cov_16.188525:1-243 [pilon] NODE_13119_length_243_cov_21.811475:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 30, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13119_length_243_cov_21.811475:1-243 [pilon] Processing NODE_7078_length_466_cov_25.086957:1-466 [pilon] NODE_10784_length_294_cov_15.208092:1-294 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 55, Coverage: 8, minDepth: 5 [pilon] Confirmed 222 of 294 bases (75.51%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10784_length_294_cov_15.208092:1-294 [pilon] Processing NODE_2053_length_1071_cov_21.823158:1-1071 [pilon] NODE_14560_length_243_cov_9.819672:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 31, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14560_length_243_cov_9.819672:1-243 [pilon] Processing NODE_1563_length_1232_cov_34.836184:1-1232 [pilon] NODE_14249_length_243_cov_12.254098:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 6, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14249_length_243_cov_12.254098:1-243 [pilon] Processing NODE_14507_length_243_cov_10.270492:1-243 [pilon] NODE_13728_length_243_cov_16.188525:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 49, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13728_length_243_cov_16.188525:1-243 [pilon] Processing NODE_9978_length_327_cov_10.660194:1-327 [pilon] NODE_7078_length_466_cov_25.086957:1-466 log: [pilon] frags shovill.bam: coverage 27 [pilon] Total Reads: 207, Coverage: 27, minDepth: 7 [pilon] Confirmed 315 of 466 bases (67.60%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7078_length_466_cov_25.086957:1-466 [pilon] Processing NODE_1505_length_1255_cov_24.216049:1-1255 [pilon] NODE_2053_length_1071_cov_21.823158:1-1071 log: [pilon] frags shovill.bam: coverage 32 [pilon] Total Reads: 496, Coverage: 32, minDepth: 8 [pilon] Confirmed 813 of 1071 bases (75.91%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2053_length_1071_cov_21.823158:1-1071 [pilon] Processing NODE_11151_length_277_cov_22.269231:1-277 [pilon] NODE_1563_length_1232_cov_34.836184:1-1232 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 997, Coverage: 45, minDepth: 11 [pilon] Confirmed 1103 of 1232 bases (89.53%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1563_length_1232_cov_34.836184:1-1232 [pilon] Processing NODE_5762_length_559_cov_0.942922:1-559 [pilon] NODE_9978_length_327_cov_10.660194:1-327 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 27, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 327 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9978_length_327_cov_10.660194:1-327 [pilon] Processing NODE_2699_length_929_cov_3.516089:1-929 [pilon] NODE_14507_length_243_cov_10.270492:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 29, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14507_length_243_cov_10.270492:1-243 [pilon] Processing NODE_8455_length_396_cov_20.047273:1-396 [pilon] NODE_11151_length_277_cov_22.269231:1-277 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 77, Coverage: 8, minDepth: 5 [pilon] Confirmed 174 of 277 bases (62.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11151_length_277_cov_22.269231:1-277 [pilon] Processing NODE_3755_length_747_cov_5.765176:1-747 [pilon] NODE_1505_length_1255_cov_24.216049:1-1255 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 651, Coverage: 50, minDepth: 13 [pilon] Confirmed 1037 of 1255 bases (82.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1505_length_1255_cov_24.216049:1-1255 [pilon] Processing NODE_3772_length_744_cov_26.215088:1-744 [pilon] NODE_5762_length_559_cov_0.942922:1-559 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 11, Coverage: 3, minDepth: 5 [pilon] Confirmed 103 of 559 bases (18.43%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5762_length_559_cov_0.942922:1-559 [pilon] Processing NODE_1208_length_1389_cov_27.404574:1-1389 [pilon] NODE_2699_length_929_cov_3.516089:1-929 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 81, Coverage: 5, minDepth: 5 [pilon] Confirmed 358 of 929 bases (38.54%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2699_length_929_cov_3.516089:1-929 [pilon] Processing NODE_2847_length_902_cov_33.051216:1-902 [pilon] NODE_8455_length_396_cov_20.047273:1-396 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 133, Coverage: 11, minDepth: 5 [pilon] Confirmed 249 of 396 bases (62.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8455_length_396_cov_20.047273:1-396 [pilon] Processing NODE_8372_length_402_cov_1.519573:1-402 [pilon] NODE_3755_length_747_cov_5.765176:1-747 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 97, Coverage: 17, minDepth: 5 [pilon] Confirmed 510 of 747 bases (68.27%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3755_length_747_cov_5.765176:1-747 [pilon] Processing NODE_6850_length_480_cov_30.593315:1-480 [pilon] NODE_3772_length_744_cov_26.215088:1-744 log: [pilon] frags shovill.bam: coverage 58 [pilon] Total Reads: 457, Coverage: 58, minDepth: 15 [pilon] Confirmed 642 of 744 bases (86.29%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3772_length_744_cov_26.215088:1-744 [pilon] Processing NODE_8450_length_396_cov_38.469091:1-396 [pilon] NODE_2847_length_902_cov_33.051216:1-902 log: [pilon] frags shovill.bam: coverage 59 [pilon] Total Reads: 609, Coverage: 59, minDepth: 15 [pilon] Confirmed 815 of 902 bases (90.35%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2847_length_902_cov_33.051216:1-902 [pilon] Processing NODE_9612_length_341_cov_56.104545:1-341 [pilon] NODE_1208_length_1389_cov_27.404574:1-1389 log: [pilon] frags shovill.bam: coverage 70 [pilon] Total Reads: 879, Coverage: 70, minDepth: 18 [pilon] Confirmed 980 of 1389 bases (70.55%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1208_length_1389_cov_27.404574:1-1389 [pilon] Processing NODE_14103_length_243_cov_13.450820:1-243 [pilon] NODE_8372_length_402_cov_1.519573:1-402 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 128 of 402 bases (31.84%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8372_length_402_cov_1.519573:1-402 [pilon] Processing NODE_6761_length_485_cov_39.755495:1-485 [pilon] NODE_6850_length_480_cov_30.593315:1-480 log: [pilon] frags shovill.bam: coverage 46 [pilon] Total Reads: 263, Coverage: 46, minDepth: 12 [pilon] Confirmed 397 of 480 bases (82.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6850_length_480_cov_30.593315:1-480 [pilon] Processing NODE_1275_length_1352_cov_15.151097:1-1352 [pilon] NODE_8450_length_396_cov_38.469091:1-396 log: [pilon] frags shovill.bam: coverage 35 [pilon] Total Reads: 223, Coverage: 35, minDepth: 9 [pilon] Confirmed 337 of 396 bases (85.10%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8450_length_396_cov_38.469091:1-396 [pilon] Processing NODE_3175_length_836_cov_12.406993:1-836 [pilon] NODE_9612_length_341_cov_56.104545:1-341 log: [pilon] frags shovill.bam: coverage 40 [pilon] Total Reads: 280, Coverage: 40, minDepth: 10 [pilon] Confirmed 296 of 341 bases (86.80%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9612_length_341_cov_56.104545:1-341 [pilon] Processing NODE_7014_length_470_cov_65.183381:1-470 [pilon] NODE_14103_length_243_cov_13.450820:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14103_length_243_cov_13.450820:1-243 [pilon] Processing NODE_7127_length_464_cov_17.717201:1-464 [pilon] NODE_6761_length_485_cov_39.755495:1-485 log: [pilon] frags shovill.bam: coverage 54 [pilon] Total Reads: 338, Coverage: 54, minDepth: 14 [pilon] Confirmed 434 of 485 bases (89.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6761_length_485_cov_39.755495:1-485 [pilon] Processing NODE_1080_length_1452_cov_27.450789:1-1452 [pilon] NODE_1275_length_1352_cov_15.151097:1-1352 log: [pilon] frags shovill.bam: coverage 31 [pilon] Total Reads: 461, Coverage: 31, minDepth: 8 [pilon] Confirmed 506 of 1352 bases (37.43%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1275_length_1352_cov_15.151097:1-1352 [pilon] Processing NODE_8595_length_389_cov_8.608209:1-389 [pilon] NODE_3175_length_836_cov_12.406993:1-836 log: [pilon] frags shovill.bam: coverage 29 [pilon] Total Reads: 193, Coverage: 29, minDepth: 7 [pilon] Confirmed 684 of 836 bases (81.82%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3175_length_836_cov_12.406993:1-836 [pilon] Processing NODE_6803_length_483_cov_2.624309:1-483 [pilon] NODE_7127_length_464_cov_17.717201:1-464 log: [pilon] frags shovill.bam: coverage 17 [pilon] Total Reads: 149, Coverage: 17, minDepth: 5 [pilon] Confirmed 362 of 464 bases (78.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7127_length_464_cov_17.717201:1-464 [pilon] Processing NODE_9693_length_339_cov_6.100917:1-339 [pilon] NODE_7014_length_470_cov_65.183381:1-470 log: [pilon] frags shovill.bam: coverage 81 [pilon] Total Reads: 513, Coverage: 81, minDepth: 20 [pilon] Confirmed 415 of 470 bases (88.30%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7014_length_470_cov_65.183381:1-470 [pilon] Processing NODE_11621_length_258_cov_30.102190:1-258 [pilon] NODE_1080_length_1452_cov_27.450789:1-1452 log: [pilon] frags shovill.bam: coverage 71 [pilon] Total Reads: 861, Coverage: 71, minDepth: 18 [pilon] Confirmed 1297 of 1452 bases (89.33%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1080_length_1452_cov_27.450789:1-1452 [pilon] Processing NODE_11638_length_258_cov_20.620438:1-258 [pilon] NODE_8595_length_389_cov_8.608209:1-389 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 54, Coverage: 2, minDepth: 5 [pilon] Confirmed 54 of 389 bases (13.88%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_8595_length_389_cov_8.608209:1-389 [pilon] Processing NODE_14744_length_243_cov_8.147541:1-243 [pilon] NODE_6803_length_483_cov_2.624309:1-483 log: [pilon] frags shovill.bam: coverage 7 [pilon] Total Reads: 26, Coverage: 7, minDepth: 5 [pilon] Confirmed 291 of 483 bases (60.25%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6803_length_483_cov_2.624309:1-483 [pilon] Processing NODE_12521_length_243_cov_28.786885:1-243 [pilon] NODE_11621_length_258_cov_30.102190:1-258 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 92, Coverage: 6, minDepth: 5 [pilon] Confirmed 150 of 258 bases (58.14%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11621_length_258_cov_30.102190:1-258 [pilon] Processing NODE_15181_length_170_cov_24.469388:1-170 [pilon] NODE_9693_length_339_cov_6.100917:1-339 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 42, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 339 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9693_length_339_cov_6.100917:1-339 [pilon] Processing NODE_7292_length_455_cov_0.664671:1-455 [pilon] NODE_11638_length_258_cov_20.620438:1-258 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 56, Coverage: 6, minDepth: 5 [pilon] Confirmed 169 of 258 bases (65.50%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11638_length_258_cov_20.620438:1-258 [pilon] Processing NODE_7687_length_433_cov_1.493590:1-433 [pilon] NODE_14744_length_243_cov_8.147541:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14744_length_243_cov_8.147541:1-243 [pilon] Processing NODE_2302_length_1011_cov_1.696629:1-1011 [pilon] NODE_12521_length_243_cov_28.786885:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 69, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12521_length_243_cov_28.786885:1-243 [pilon] Processing NODE_14530_length_243_cov_10.016393:1-243 [pilon] NODE_15181_length_170_cov_24.469388:1-170 log: [pilon] frags shovill.bam: coverage 1 [pilon] Total Reads: 21, Coverage: 1, minDepth: 5 [pilon] Confirmed 0 of 170 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15181_length_170_cov_24.469388:1-170 [pilon] Processing NODE_13368_length_243_cov_19.672131:1-243 [pilon] NODE_7292_length_455_cov_0.664671:1-455 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 455 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7292_length_455_cov_0.664671:1-455 [pilon] Processing NODE_14767_length_243_cov_7.983607:1-243 [pilon] NODE_7687_length_433_cov_1.493590:1-433 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 10, Coverage: 3, minDepth: 5 [pilon] Confirmed 103 of 433 bases (23.79%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7687_length_433_cov_1.493590:1-433 [pilon] Processing NODE_6693_length_491_cov_1.897297:1-491 [pilon] NODE_2302_length_1011_cov_1.696629:1-1011 log: [pilon] frags shovill.bam: coverage 6 [pilon] Total Reads: 51, Coverage: 6, minDepth: 5 [pilon] Confirmed 634 of 1011 bases (62.71%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2302_length_1011_cov_1.696629:1-1011 [pilon] Processing NODE_3540_length_778_cov_35.127854:1-778 [pilon] NODE_14530_length_243_cov_10.016393:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 28, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14530_length_243_cov_10.016393:1-243 [pilon] NODE_13368_length_243_cov_19.672131:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 32, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13368_length_243_cov_19.672131:1-243 [pilon] Processing NODE_5718_length_562_cov_1.839002:1-562 [pilon] NODE_14767_length_243_cov_7.983607:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 10, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14767_length_243_cov_7.983607:1-243 [pilon] Processing NODE_11456_length_264_cov_28.391608:1-264 [pilon] NODE_6693_length_491_cov_1.897297:1-491 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 20, Coverage: 5, minDepth: 5 [pilon] Confirmed 283 of 491 bases (57.64%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6693_length_491_cov_1.897297:1-491 [pilon] Processing NODE_5764_length_558_cov_54.546911:1-558 [pilon] NODE_3540_length_778_cov_35.127854:1-778 log: [pilon] frags shovill.bam: coverage 45 [pilon] Total Reads: 584, Coverage: 45, minDepth: 11 [pilon] Confirmed 744 of 778 bases (95.63%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_3540_length_778_cov_35.127854:1-778 [pilon] Processing NODE_7661_length_435_cov_0.538217:1-435 [pilon] NODE_5718_length_562_cov_1.839002:1-562 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 19, Coverage: 4, minDepth: 5 [pilon] Confirmed 214 of 562 bases (38.08%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5718_length_562_cov_1.839002:1-562 [pilon] Processing NODE_10683_length_299_cov_6.117978:1-299 [pilon] NODE_11456_length_264_cov_28.391608:1-264 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 80, Coverage: 8, minDepth: 5 [pilon] Confirmed 196 of 264 bases (74.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11456_length_264_cov_28.391608:1-264 [pilon] Processing NODE_13000_length_243_cov_22.909836:1-243 [pilon] NODE_7661_length_435_cov_0.538217:1-435 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 6, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 435 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_7661_length_435_cov_0.538217:1-435 [pilon] Processing NODE_9492_length_345_cov_66.897321:1-345 [pilon] NODE_5764_length_558_cov_54.546911:1-558 log: [pilon] frags shovill.bam: coverage 80 [pilon] Total Reads: 523, Coverage: 80, minDepth: 20 [pilon] Confirmed 488 of 558 bases (87.46%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5764_length_558_cov_54.546911:1-558 [pilon] Processing NODE_4926_length_624_cov_12.642147:1-624 [pilon] NODE_10683_length_299_cov_6.117978:1-299 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 20, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 299 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_10683_length_299_cov_6.117978:1-299 [pilon] Processing NODE_4707_length_643_cov_0.808429:1-643 [pilon] NODE_13000_length_243_cov_22.909836:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 26, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_13000_length_243_cov_22.909836:1-243 [pilon] Processing NODE_14462_length_243_cov_10.590164:1-243 [pilon] NODE_4926_length_624_cov_12.642147:1-624 log: [pilon] frags shovill.bam: coverage 16 [pilon] Total Reads: 153, Coverage: 16, minDepth: 5 [pilon] Confirmed 363 of 624 bases (58.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4926_length_624_cov_12.642147:1-624 [pilon] Processing NODE_9745_length_336_cov_20.102326:1-336 [pilon] NODE_9492_length_345_cov_66.897321:1-345 log: [pilon] frags shovill.bam: coverage 50 [pilon] Total Reads: 352, Coverage: 50, minDepth: 13 [pilon] Confirmed 307 of 345 bases (88.99%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9492_length_345_cov_66.897321:1-345 [pilon] NODE_4707_length_643_cov_0.808429:1-643 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 16, Coverage: 3, minDepth: 5 [pilon] Confirmed 200 of 643 bases (31.10%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_4707_length_643_cov_0.808429:1-643 [pilon] Processing NODE_5889_length_549_cov_1.018692:1-549 [pilon] NODE_14462_length_243_cov_10.590164:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 33, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_14462_length_243_cov_10.590164:1-243 [pilon] Processing NODE_15036_length_243_cov_5.040984:1-243 [pilon] NODE_9745_length_336_cov_20.102326:1-336 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 113, Coverage: 14, minDepth: 5 [pilon] Confirmed 257 of 336 bases (76.49%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9745_length_336_cov_20.102326:1-336 [pilon] Processing NODE_6763_length_485_cov_32.329670:1-485 [pilon] NODE_5889_length_549_cov_1.018692:1-549 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 15, Coverage: 3, minDepth: 5 [pilon] Confirmed 168 of 549 bases (30.60%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5889_length_549_cov_1.018692:1-549 [pilon] Processing NODE_9020_length_366_cov_2.200000:1-366 [pilon] NODE_15036_length_243_cov_5.040984:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 24, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_15036_length_243_cov_5.040984:1-243 [pilon] Processing NODE_9852_length_332_cov_25.142180:1-332 [pilon] NODE_6763_length_485_cov_32.329670:1-485 log: [pilon] frags shovill.bam: coverage 49 [pilon] Total Reads: 285, Coverage: 49, minDepth: 12 [pilon] Confirmed 401 of 485 bases (82.68%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6763_length_485_cov_32.329670:1-485 [pilon] Processing NODE_6662_length_493_cov_1.290323:1-493 [pilon] NODE_9020_length_366_cov_2.200000:1-366 log: [pilon] frags shovill.bam: coverage 2 [pilon] Total Reads: 24, Coverage: 2, minDepth: 5 [pilon] Confirmed 0 of 366 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9020_length_366_cov_2.200000:1-366 [pilon] Processing NODE_5544_length_574_cov_4.313466:1-574 [pilon] NODE_6662_length_493_cov_1.290323:1-493 log: [pilon] frags shovill.bam: coverage 3 [pilon] Total Reads: 13, Coverage: 3, minDepth: 5 [pilon] Confirmed 130 of 493 bases (26.37%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6662_length_493_cov_1.290323:1-493 [pilon] Processing NODE_6376_length_512_cov_3.621483:1-512 [pilon] NODE_9852_length_332_cov_25.142180:1-332 log: [pilon] frags shovill.bam: coverage 14 [pilon] Total Reads: 110, Coverage: 14, minDepth: 5 [pilon] Confirmed 283 of 332 bases (85.24%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9852_length_332_cov_25.142180:1-332 [pilon] Processing NODE_12150_length_243_cov_39.237705:1-243 [pilon] NODE_5544_length_574_cov_4.313466:1-574 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 50, Coverage: 11, minDepth: 5 [pilon] Confirmed 466 of 574 bases (81.18%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_5544_length_574_cov_4.313466:1-574 [pilon] Processing NODE_11626_length_258_cov_24.795620:1-258 [pilon] NODE_6376_length_512_cov_3.621483:1-512 log: [pilon] frags shovill.bam: coverage 8 [pilon] Total Reads: 42, Coverage: 8, minDepth: 5 [pilon] Confirmed 379 of 512 bases (74.02%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_6376_length_512_cov_3.621483:1-512 [pilon] Processing NODE_598_length_1812_cov_2.626257:1-1812 [pilon] NODE_12150_length_243_cov_39.237705:1-243 log: [pilon] frags shovill.bam: coverage 0 [pilon] Total Reads: 36, Coverage: 0, minDepth: 5 [pilon] Confirmed 0 of 243 bases (0.00%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_12150_length_243_cov_39.237705:1-243 [pilon] Processing NODE_9733_length_336_cov_30.460465:1-336 [pilon] NODE_11626_length_258_cov_24.795620:1-258 log: [pilon] frags shovill.bam: coverage 10 [pilon] Total Reads: 73, Coverage: 10, minDepth: 5 [pilon] Confirmed 192 of 258 bases (74.42%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_11626_length_258_cov_24.795620:1-258 [pilon] Processing NODE_1387_length_1302_cov_1.002540:1-1302 [pilon] NODE_9733_length_336_cov_30.460465:1-336 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 130, Coverage: 4, minDepth: 5 [pilon] Confirmed 136 of 336 bases (40.48%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_9733_length_336_cov_30.460465:1-336 [pilon] Processing NODE_2109_length_1057_cov_1.628205:1-1057 [pilon] NODE_598_length_1812_cov_2.626257:1-1812 log: [pilon] frags shovill.bam: coverage 11 [pilon] Total Reads: 153, Coverage: 11, minDepth: 5 [pilon] Confirmed 1609 of 1812 bases (88.80%) [pilon] Corrected 5 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_598_length_1812_cov_2.626257:1-1812 [pilon] NODE_1387_length_1302_cov_1.002540:1-1302 log: [pilon] frags shovill.bam: coverage 4 [pilon] Total Reads: 48, Coverage: 4, minDepth: 5 [pilon] Confirmed 522 of 1302 bases (40.09%) [pilon] Corrected 3 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_1387_length_1302_cov_1.002540:1-1302 [pilon] NODE_2109_length_1057_cov_1.628205:1-1057 log: [pilon] frags shovill.bam: coverage 5 [pilon] Total Reads: 44, Coverage: 5, minDepth: 5 [pilon] Confirmed 512 of 1057 bases (48.44%) [pilon] Corrected 1 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2109_length_1057_cov_1.628205:1-1057 [pilon] Processing NODE_2401_length_990_cov_20.658228:1-990 [pilon] NODE_2401_length_990_cov_20.658228:1-990 log: [pilon] frags shovill.bam: coverage 44 [pilon] Total Reads: 431, Coverage: 44, minDepth: 11 [pilon] Confirmed 764 of 990 bases (77.17%) [pilon] Corrected 0 snps; 0 ambiguous bases; corrected 0 small insertions totaling 0 bases, 0 small deletions totaling 0 bases [pilon] Finished processing NODE_2401_length_990_cov_20.658228:1-990 [pilon] Writing NODE_1_length_9825_cov_16.330688:1-9825 changes to pilon.changes [pilon] Writing updated NODE_1_length_9825_cov_16.330688_pilon to pilon.fasta [pilon] Writing NODE_2_length_9632_cov_18.016928:1-9632 changes to pilon.changes [pilon] Writing updated NODE_2_length_9632_cov_18.016928_pilon to pilon.fasta [pilon] Writing NODE_3_length_8724_cov_25.126119:1-8724 changes to pilon.changes [pilon] Writing updated NODE_3_length_8724_cov_25.126119_pilon to pilon.fasta [pilon] Writing NODE_4_length_7509_cov_17.981998:1-7509 changes to pilon.changes [pilon] Writing updated NODE_4_length_7509_cov_17.981998_pilon to pilon.fasta [pilon] Writing NODE_5_length_7330_cov_21.827160:1-7330 changes to pilon.changes [pilon] Writing updated NODE_5_length_7330_cov_21.827160_pilon to pilon.fasta [pilon] Writing NODE_6_length_6713_cov_43.613471:1-6713 changes to pilon.changes [pilon] Writing updated NODE_6_length_6713_cov_43.613471_pilon to pilon.fasta [pilon] Writing NODE_7_length_6286_cov_26.557664:1-6286 changes to pilon.changes [pilon] Writing updated NODE_7_length_6286_cov_26.557664_pilon to pilon.fasta [pilon] Writing NODE_8_length_6135_cov_27.538244:1-6135 changes to pilon.changes [pilon] Writing updated NODE_8_length_6135_cov_27.538244_pilon to pilon.fasta [pilon] Writing NODE_9_length_5980_cov_3.299198:1-5980 changes to pilon.changes [pilon] Writing updated NODE_9_length_5980_cov_3.299198_pilon to pilon.fasta [pilon] Writing NODE_10_length_5871_cov_16.655304:1-5871 changes to pilon.changes [pilon] Writing updated NODE_10_length_5871_cov_16.655304_pilon to pilon.fasta [pilon] Writing NODE_11_length_5824_cov_12.004559:1-5824 changes to pilon.changes [pilon] Writing updated NODE_11_length_5824_cov_12.004559_pilon to pilon.fasta [pilon] Writing NODE_12_length_5818_cov_14.427769:1-5818 changes to pilon.changes [pilon] Writing updated NODE_12_length_5818_cov_14.427769_pilon to pilon.fasta [pilon] Writing NODE_13_length_5578_cov_17.287704:1-5578 changes to pilon.changes [pilon] Writing updated NODE_13_length_5578_cov_17.287704_pilon to pilon.fasta [pilon] Writing NODE_14_length_5470_cov_5.433913:1-5470 changes to pilon.changes [pilon] Writing updated NODE_14_length_5470_cov_5.433913_pilon to pilon.fasta [pilon] Writing NODE_15_length_5382_cov_27.628208:1-5382 changes to pilon.changes [pilon] Writing updated NODE_15_length_5382_cov_27.628208_pilon to pilon.fasta [pilon] Writing NODE_16_length_5332_cov_19.982921:1-5332 changes to pilon.changes [pilon] Writing updated NODE_16_length_5332_cov_19.982921_pilon to pilon.fasta [pilon] Writing NODE_17_length_5332_cov_17.927269:1-5332 changes to pilon.changes [pilon] Writing updated NODE_17_length_5332_cov_17.927269_pilon to pilon.fasta [pilon] Writing NODE_18_length_5299_cov_2.793936:1-5299 changes to pilon.changes [pilon] Writing updated NODE_18_length_5299_cov_2.793936_pilon to pilon.fasta [pilon] Writing NODE_19_length_5200_cov_10.977161:1-5200 changes to pilon.changes [pilon] Writing updated NODE_19_length_5200_cov_10.977161_pilon to pilon.fasta [pilon] Writing NODE_20_length_5170_cov_4.064567:1-5170 changes to pilon.changes [pilon] Writing updated NODE_20_length_5170_cov_4.064567_pilon to pilon.fasta [pilon] Writing NODE_21_length_5022_cov_32.476433:1-5022 changes to pilon.changes [pilon] Writing updated NODE_21_length_5022_cov_32.476433_pilon to pilon.fasta [pilon] Writing NODE_22_length_4902_cov_12.849613:1-4902 changes to pilon.changes [pilon] Writing updated NODE_22_length_4902_cov_12.849613_pilon to pilon.fasta [pilon] Writing NODE_23_length_4817_cov_14.551107:1-4817 changes to pilon.changes [pilon] Writing updated NODE_23_length_4817_cov_14.551107_pilon to pilon.fasta [pilon] Writing NODE_24_length_4809_cov_23.779437:1-4809 changes to pilon.changes [pilon] Writing updated NODE_24_length_4809_cov_23.779437_pilon to pilon.fasta [pilon] Writing NODE_25_length_4752_cov_27.004103:1-4752 changes to pilon.changes [pilon] Writing updated NODE_25_length_4752_cov_27.004103_pilon to pilon.fasta [pilon] Writing NODE_26_length_4704_cov_20.249618:1-4704 changes to pilon.changes [pilon] Writing updated NODE_26_length_4704_cov_20.249618_pilon to pilon.fasta [pilon] Writing NODE_27_length_4699_cov_22.063565:1-4699 changes to pilon.changes [pilon] Writing updated NODE_27_length_4699_cov_22.063565_pilon to pilon.fasta [pilon] Writing NODE_28_length_4683_cov_15.093161:1-4683 changes to pilon.changes [pilon] Writing updated NODE_28_length_4683_cov_15.093161_pilon to pilon.fasta [pilon] Writing NODE_29_length_4665_cov_18.992958:1-4665 changes to pilon.changes [pilon] Writing updated NODE_29_length_4665_cov_18.992958_pilon to pilon.fasta [pilon] Writing NODE_30_length_4619_cov_17.853490:1-4619 changes to pilon.changes [pilon] Writing updated NODE_30_length_4619_cov_17.853490_pilon to pilon.fasta [pilon] Writing NODE_31_length_4494_cov_18.971873:1-4494 changes to pilon.changes [pilon] Writing updated NODE_31_length_4494_cov_18.971873_pilon to pilon.fasta [pilon] Writing NODE_32_length_4487_cov_22.098030:1-4487 changes to pilon.changes [pilon] Writing updated NODE_32_length_4487_cov_22.098030_pilon to pilon.fasta [pilon] Writing NODE_33_length_4440_cov_8.994212:1-4440 changes to pilon.changes [pilon] Writing updated NODE_33_length_4440_cov_8.994212_pilon to pilon.fasta [pilon] Writing NODE_34_length_4437_cov_3.192771:1-4437 changes to pilon.changes [pilon] Writing updated NODE_34_length_4437_cov_3.192771_pilon to pilon.fasta [pilon] Writing NODE_35_length_4353_cov_33.435255:1-4353 changes to pilon.changes [pilon] Writing updated NODE_35_length_4353_cov_33.435255_pilon to pilon.fasta [pilon] Writing NODE_36_length_4172_cov_20.277462:1-4172 changes to pilon.changes [pilon] Writing updated NODE_36_length_4172_cov_20.277462_pilon to pilon.fasta [pilon] Writing NODE_37_length_4126_cov_22.054432:1-4126 changes to pilon.changes [pilon] Writing updated NODE_37_length_4126_cov_22.054432_pilon to pilon.fasta [pilon] Writing NODE_38_length_4067_cov_5.687532:1-4067 changes to pilon.changes [pilon] Writing updated NODE_38_length_4067_cov_5.687532_pilon to pilon.fasta [pilon] Writing NODE_39_length_4037_cov_7.535495:1-4037 changes to pilon.changes [pilon] Writing updated NODE_39_length_4037_cov_7.535495_pilon to pilon.fasta [pilon] Writing NODE_40_length_3957_cov_27.478884:1-3957 changes to pilon.changes [pilon] Writing updated NODE_40_length_3957_cov_27.478884_pilon to pilon.fasta [pilon] Writing NODE_41_length_3942_cov_21.728605:1-3942 changes to pilon.changes [pilon] Writing updated NODE_41_length_3942_cov_21.728605_pilon to pilon.fasta [pilon] Writing NODE_42_length_3864_cov_21.510019:1-3864 changes to pilon.changes [pilon] Writing updated NODE_42_length_3864_cov_21.510019_pilon to pilon.fasta [pilon] Writing NODE_43_length_3814_cov_21.321690:1-3814 changes to pilon.changes [pilon] Writing updated NODE_43_length_3814_cov_21.321690_pilon to pilon.fasta [pilon] Writing NODE_44_length_3808_cov_11.535666:1-3808 changes to pilon.changes [pilon] Writing updated NODE_44_length_3808_cov_11.535666_pilon to pilon.fasta [pilon] Writing NODE_45_length_3798_cov_15.249932:1-3798 changes to pilon.changes [pilon] Writing updated NODE_45_length_3798_cov_15.249932_pilon to pilon.fasta [pilon] Writing NODE_46_length_3797_cov_15.596028:1-3797 changes to pilon.changes [pilon] Writing updated NODE_46_length_3797_cov_15.596028_pilon to pilon.fasta [pilon] Writing NODE_47_length_3731_cov_15.499723:1-3731 changes to pilon.changes [pilon] Writing updated NODE_47_length_3731_cov_15.499723_pilon to pilon.fasta [pilon] Writing NODE_48_length_3615_cov_1.363194:1-3615 changes to pilon.changes [pilon] Writing updated NODE_48_length_3615_cov_1.363194_pilon to pilon.fasta [pilon] Writing NODE_49_length_3593_cov_35.938364:1-3593 changes to pilon.changes [pilon] Writing updated NODE_49_length_3593_cov_35.938364_pilon to pilon.fasta [pilon] Writing NODE_50_length_3591_cov_17.192219:1-3591 changes to pilon.changes [pilon] Writing updated NODE_50_length_3591_cov_17.192219_pilon to pilon.fasta [pilon] Writing NODE_51_length_3585_cov_28.879619:1-3585 changes to pilon.changes [pilon] Writing updated NODE_51_length_3585_cov_28.879619_pilon to pilon.fasta [pilon] Writing NODE_52_length_3565_cov_9.647793:1-3565 changes to pilon.changes [pilon] Writing updated NODE_52_length_3565_cov_9.647793_pilon to pilon.fasta [pilon] Writing NODE_53_length_3562_cov_13.454810:1-3562 changes to pilon.changes [pilon] Writing updated NODE_53_length_3562_cov_13.454810_pilon to pilon.fasta [pilon] Writing NODE_54_length_3552_cov_21.366074:1-3552 changes to pilon.changes [pilon] Writing updated NODE_54_length_3552_cov_21.366074_pilon to pilon.fasta [pilon] Writing NODE_55_length_3546_cov_11.927591:1-3546 changes to pilon.changes [pilon] Writing updated NODE_55_length_3546_cov_11.927591_pilon to pilon.fasta [pilon] Writing NODE_56_length_3537_cov_28.460187:1-3537 changes to pilon.changes [pilon] Writing updated NODE_56_length_3537_cov_28.460187_pilon to pilon.fasta [pilon] Writing NODE_57_length_3495_cov_23.456728:1-3495 changes to pilon.changes [pilon] Writing updated NODE_57_length_3495_cov_23.456728_pilon to pilon.fasta [pilon] Writing NODE_58_length_3471_cov_2.893731:1-3471 changes to pilon.changes [pilon] Writing updated NODE_58_length_3471_cov_2.893731_pilon to pilon.fasta [pilon] Writing NODE_59_length_3455_cov_17.742352:1-3455 changes to pilon.changes [pilon] Writing updated NODE_59_length_3455_cov_17.742352_pilon to pilon.fasta [pilon] Writing NODE_60_length_3436_cov_34.035294:1-3436 changes to pilon.changes [pilon] Writing updated NODE_60_length_3436_cov_34.035294_pilon to pilon.fasta [pilon] Writing NODE_61_length_3398_cov_12.118401:1-3398 changes to pilon.changes [pilon] Writing updated NODE_61_length_3398_cov_12.118401_pilon to pilon.fasta [pilon] Writing NODE_62_length_3391_cov_18.534251:1-3391 changes to pilon.changes [pilon] Writing updated NODE_62_length_3391_cov_18.534251_pilon to pilon.fasta [pilon] Writing NODE_63_length_3388_cov_17.286807:1-3388 changes to pilon.changes [pilon] Writing updated NODE_63_length_3388_cov_17.286807_pilon to pilon.fasta [pilon] Writing NODE_64_length_3383_cov_10.114960:1-3383 changes to pilon.changes [pilon] Writing updated NODE_64_length_3383_cov_10.114960_pilon to pilon.fasta [pilon] Writing NODE_65_length_3359_cov_2.941939:1-3359 changes to pilon.changes [pilon] Writing updated NODE_65_length_3359_cov_2.941939_pilon to pilon.fasta [pilon] Writing NODE_66_length_3335_cov_19.546982:1-3335 changes to pilon.changes [pilon] Writing updated NODE_66_length_3335_cov_19.546982_pilon to pilon.fasta [pilon] Writing NODE_67_length_3334_cov_2.187675:1-3334 changes to pilon.changes [pilon] Writing updated NODE_67_length_3334_cov_2.187675_pilon to pilon.fasta [pilon] Writing NODE_68_length_3325_cov_15.450999:1-3325 changes to pilon.changes [pilon] Writing updated NODE_68_length_3325_cov_15.450999_pilon to pilon.fasta [pilon] Writing NODE_69_length_3317_cov_21.759074:1-3317 changes to pilon.changes [pilon] Writing updated NODE_69_length_3317_cov_21.759074_pilon to pilon.fasta [pilon] Writing NODE_70_length_3293_cov_1.966583:1-3293 changes to pilon.changes [pilon] Writing updated NODE_70_length_3293_cov_1.966583_pilon to pilon.fasta [pilon] Writing NODE_71_length_3290_cov_3.015778:1-3290 changes to pilon.changes [pilon] Writing updated NODE_71_length_3290_cov_3.015778_pilon to pilon.fasta [pilon] Writing NODE_72_length_3288_cov_18.425639:1-3288 changes to pilon.changes [pilon] Writing updated NODE_72_length_3288_cov_18.425639_pilon to pilon.fasta [pilon] Writing NODE_73_length_3271_cov_9.746667:1-3271 changes to pilon.changes [pilon] Writing updated NODE_73_length_3271_cov_9.746667_pilon to pilon.fasta [pilon] Writing NODE_74_length_3257_cov_3.824936:1-3257 changes to pilon.changes [pilon] Writing updated NODE_74_length_3257_cov_3.824936_pilon to pilon.fasta [pilon] Writing NODE_75_length_3253_cov_2.180396:1-3253 changes to pilon.changes [pilon] Writing updated NODE_75_length_3253_cov_2.180396_pilon to pilon.fasta [pilon] Writing NODE_76_length_3249_cov_1.394182:1-3249 changes to pilon.changes [pilon] Writing updated NODE_76_length_3249_cov_1.394182_pilon to pilon.fasta [pilon] Writing NODE_77_length_3246_cov_11.819840:1-3246 changes to pilon.changes [pilon] Writing updated NODE_77_length_3246_cov_11.819840_pilon to pilon.fasta [pilon] Writing NODE_78_length_3195_cov_26.173064:1-3195 changes to pilon.changes [pilon] Writing updated NODE_78_length_3195_cov_26.173064_pilon to pilon.fasta [pilon] Writing NODE_79_length_3177_cov_2.158704:1-3177 changes to pilon.changes [pilon] Writing updated NODE_79_length_3177_cov_2.158704_pilon to pilon.fasta [pilon] Writing NODE_80_length_3176_cov_31.522422:1-3176 changes to pilon.changes [pilon] Writing updated NODE_80_length_3176_cov_31.522422_pilon to pilon.fasta [pilon] Writing NODE_81_length_3164_cov_32.062110:1-3164 changes to pilon.changes [pilon] Writing updated NODE_81_length_3164_cov_32.062110_pilon to pilon.fasta [pilon] Writing NODE_82_length_3160_cov_20.669299:1-3160 changes to pilon.changes [pilon] Writing updated NODE_82_length_3160_cov_20.669299_pilon to pilon.fasta [pilon] Writing NODE_83_length_3154_cov_4.627432:1-3154 changes to pilon.changes [pilon] Writing updated NODE_83_length_3154_cov_4.627432_pilon to pilon.fasta [pilon] Writing NODE_84_length_3142_cov_16.734856:1-3142 changes to pilon.changes [pilon] Writing updated NODE_84_length_3142_cov_16.734856_pilon to pilon.fasta [pilon] Writing NODE_85_length_3132_cov_22.957821:1-3132 changes to pilon.changes [pilon] Writing updated NODE_85_length_3132_cov_22.957821_pilon to pilon.fasta [pilon] Writing NODE_86_length_3126_cov_2.255907:1-3126 changes to pilon.changes [pilon] Writing updated NODE_86_length_3126_cov_2.255907_pilon to pilon.fasta [pilon] Writing NODE_87_length_3114_cov_17.936184:1-3114 changes to pilon.changes [pilon] Writing updated NODE_87_length_3114_cov_17.936184_pilon to pilon.fasta [pilon] Writing NODE_88_length_3109_cov_9.926037:1-3109 changes to pilon.changes [pilon] Writing updated NODE_88_length_3109_cov_9.926037_pilon to pilon.fasta [pilon] Writing NODE_89_length_3099_cov_25.088650:1-3099 changes to pilon.changes [pilon] Writing updated NODE_89_length_3099_cov_25.088650_pilon to pilon.fasta [pilon] Writing NODE_90_length_3099_cov_22.781061:1-3099 changes to pilon.changes [pilon] Writing updated NODE_90_length_3099_cov_22.781061_pilon to pilon.fasta [pilon] Writing NODE_91_length_3086_cov_23.203710:1-3086 changes to pilon.changes [pilon] Writing updated NODE_91_length_3086_cov_23.203710_pilon to pilon.fasta [pilon] Writing NODE_92_length_3075_cov_25.264726:1-3075 changes to pilon.changes [pilon] Writing updated NODE_92_length_3075_cov_25.264726_pilon to pilon.fasta [pilon] Writing NODE_93_length_3068_cov_2.089243:1-3068 changes to pilon.changes [pilon] Writing updated NODE_93_length_3068_cov_2.089243_pilon to pilon.fasta [pilon] Writing NODE_94_length_3065_cov_20.205842:1-3065 changes to pilon.changes [pilon] Writing updated NODE_94_length_3065_cov_20.205842_pilon to pilon.fasta [pilon] Writing NODE_95_length_3051_cov_17.206826:1-3051 changes to pilon.changes [pilon] Writing updated NODE_95_length_3051_cov_17.206826_pilon to pilon.fasta [pilon] Writing NODE_96_length_3046_cov_3.953162:1-3046 changes to pilon.changes [pilon] Writing updated NODE_96_length_3046_cov_3.953162_pilon to pilon.fasta [pilon] Writing NODE_97_length_3034_cov_19.731205:1-3034 changes to pilon.changes [pilon] Writing updated NODE_97_length_3034_cov_19.731205_pilon to pilon.fasta [pilon] Writing NODE_98_length_3009_cov_19.201870:1-3009 changes to pilon.changes [pilon] Writing updated NODE_98_length_3009_cov_19.201870_pilon to pilon.fasta [pilon] Writing NODE_99_length_3008_cov_11.984413:1-3008 changes to pilon.changes [pilon] Writing updated NODE_99_length_3008_cov_11.984413_pilon to pilon.fasta [pilon] Writing NODE_100_length_3005_cov_19.912275:1-3005 changes to pilon.changes [pilon] Writing updated NODE_100_length_3005_cov_19.912275_pilon to pilon.fasta [pilon] Writing NODE_101_length_2985_cov_18.137919:1-2985 changes to pilon.changes [pilon] Writing updated NODE_101_length_2985_cov_18.137919_pilon to pilon.fasta [pilon] Writing NODE_102_length_2984_cov_14.011876:1-2984 changes to pilon.changes [pilon] Writing updated NODE_102_length_2984_cov_14.011876_pilon to pilon.fasta [pilon] Writing NODE_103_length_2980_cov_17.089542:1-2980 changes to pilon.changes [pilon] Writing updated NODE_103_length_2980_cov_17.089542_pilon to pilon.fasta [pilon] Writing NODE_104_length_2978_cov_21.169058:1-2978 changes to pilon.changes [pilon] Writing updated NODE_104_length_2978_cov_21.169058_pilon to pilon.fasta [pilon] Writing NODE_105_length_2965_cov_24.296062:1-2965 changes to pilon.changes [pilon] Writing updated NODE_105_length_2965_cov_24.296062_pilon to pilon.fasta [pilon] Writing NODE_106_length_2949_cov_32.185290:1-2949 changes to pilon.changes [pilon] Writing updated NODE_106_length_2949_cov_32.185290_pilon to pilon.fasta [pilon] Writing NODE_107_length_2943_cov_2.239901:1-2943 changes to pilon.changes [pilon] Writing updated NODE_107_length_2943_cov_2.239901_pilon to pilon.fasta [pilon] Writing NODE_108_length_2939_cov_13.002129:1-2939 changes to pilon.changes [pilon] Writing updated NODE_108_length_2939_cov_13.002129_pilon to pilon.fasta [pilon] Writing NODE_109_length_2933_cov_11.557610:1-2933 changes to pilon.changes [pilon] Writing updated NODE_109_length_2933_cov_11.557610_pilon to pilon.fasta [pilon] Writing NODE_110_length_2932_cov_16.357168:1-2932 changes to pilon.changes [pilon] Writing updated NODE_110_length_2932_cov_16.357168_pilon to pilon.fasta [pilon] Writing NODE_111_length_2926_cov_2.028520:1-2926 changes to pilon.changes [pilon] Writing updated NODE_111_length_2926_cov_2.028520_pilon to pilon.fasta [pilon] Writing NODE_112_length_2921_cov_2.535357:1-2921 changes to pilon.changes [pilon] Writing updated NODE_112_length_2921_cov_2.535357_pilon to pilon.fasta [pilon] Writing NODE_113_length_2916_cov_39.312343:1-2916 changes to pilon.changes [pilon] Writing updated NODE_113_length_2916_cov_39.312343_pilon to pilon.fasta [pilon] Writing NODE_114_length_2905_cov_23.203305:1-2905 changes to pilon.changes [pilon] Writing updated NODE_114_length_2905_cov_23.203305_pilon to pilon.fasta [pilon] Writing NODE_115_length_2905_cov_19.911279:1-2905 changes to pilon.changes [pilon] Writing updated NODE_115_length_2905_cov_19.911279_pilon to pilon.fasta [pilon] Writing NODE_116_length_2905_cov_16.899066:1-2905 changes to pilon.changes [pilon] Writing updated NODE_116_length_2905_cov_16.899066_pilon to pilon.fasta [pilon] Writing NODE_117_length_2895_cov_3.478010:1-2895 changes to pilon.changes [pilon] Writing updated NODE_117_length_2895_cov_3.478010_pilon to pilon.fasta [pilon] Writing NODE_118_length_2894_cov_3.036423:1-2894 changes to pilon.changes [pilon] Writing updated NODE_118_length_2894_cov_3.036423_pilon to pilon.fasta [pilon] Writing NODE_119_length_2889_cov_16.993136:1-2889 changes to pilon.changes [pilon] Writing updated NODE_119_length_2889_cov_16.993136_pilon to pilon.fasta [pilon] Writing NODE_120_length_2887_cov_16.683297:1-2887 changes to pilon.changes [pilon] Writing updated NODE_120_length_2887_cov_16.683297_pilon to pilon.fasta [pilon] Writing NODE_121_length_2881_cov_22.232971:1-2881 changes to pilon.changes [pilon] Writing updated NODE_121_length_2881_cov_22.232971_pilon to pilon.fasta [pilon] Writing NODE_122_length_2874_cov_2.451144:1-2874 changes to pilon.changes [pilon] Writing updated NODE_122_length_2874_cov_2.451144_pilon to pilon.fasta [pilon] Writing NODE_123_length_2864_cov_23.246810:1-2864 changes to pilon.changes [pilon] Writing updated NODE_123_length_2864_cov_23.246810_pilon to pilon.fasta [pilon] Writing NODE_124_length_2858_cov_40.941542:1-2858 changes to pilon.changes [pilon] Writing updated NODE_124_length_2858_cov_40.941542_pilon to pilon.fasta [pilon] Writing NODE_125_length_2852_cov_10.360674:1-2852 changes to pilon.changes [pilon] Writing updated NODE_125_length_2852_cov_10.360674_pilon to pilon.fasta [pilon] Writing NODE_126_length_2847_cov_23.228540:1-2847 changes to pilon.changes [pilon] Writing updated NODE_126_length_2847_cov_23.228540_pilon to pilon.fasta [pilon] Writing NODE_127_length_2841_cov_16.661397:1-2841 changes to pilon.changes [pilon] Writing updated NODE_127_length_2841_cov_16.661397_pilon to pilon.fasta [pilon] Writing NODE_128_length_2835_cov_3.148489:1-2835 changes to pilon.changes [pilon] Writing updated NODE_128_length_2835_cov_3.148489_pilon to pilon.fasta [pilon] Writing NODE_129_length_2824_cov_25.714391:1-2824 changes to pilon.changes [pilon] Writing updated NODE_129_length_2824_cov_25.714391_pilon to pilon.fasta [pilon] Writing NODE_130_length_2815_cov_19.983667:1-2815 changes to pilon.changes [pilon] Writing updated NODE_130_length_2815_cov_19.983667_pilon to pilon.fasta [pilon] Writing NODE_131_length_2811_cov_1.649442:1-2811 changes to pilon.changes [pilon] Writing updated NODE_131_length_2811_cov_1.649442_pilon to pilon.fasta [pilon] Writing NODE_132_length_2809_cov_10.642485:1-2809 changes to pilon.changes [pilon] Writing updated NODE_132_length_2809_cov_10.642485_pilon to pilon.fasta [pilon] Writing NODE_133_length_2807_cov_18.207744:1-2807 changes to pilon.changes [pilon] Writing updated NODE_133_length_2807_cov_18.207744_pilon to pilon.fasta [pilon] Writing NODE_134_length_2806_cov_8.497579:1-2806 changes to pilon.changes [pilon] Writing updated NODE_134_length_2806_cov_8.497579_pilon to pilon.fasta [pilon] Writing NODE_135_length_2804_cov_14.558330:1-2804 changes to pilon.changes [pilon] Writing updated NODE_135_length_2804_cov_14.558330_pilon to pilon.fasta [pilon] Writing NODE_136_length_2798_cov_15.769145:1-2798 changes to pilon.changes [pilon] Writing updated NODE_136_length_2798_cov_15.769145_pilon to pilon.fasta [pilon] Writing NODE_137_length_2789_cov_28.247751:1-2789 changes to pilon.changes [pilon] Writing updated NODE_137_length_2789_cov_28.247751_pilon to pilon.fasta [pilon] Writing NODE_138_length_2788_cov_2.385077:1-2788 changes to pilon.changes [pilon] Writing updated NODE_138_length_2788_cov_2.385077_pilon to pilon.fasta [pilon] Writing NODE_139_length_2786_cov_12.425516:1-2786 changes to pilon.changes [pilon] Writing updated NODE_139_length_2786_cov_12.425516_pilon to pilon.fasta [pilon] Writing NODE_140_length_2780_cov_15.466341:1-2780 changes to pilon.changes [pilon] Writing updated NODE_140_length_2780_cov_15.466341_pilon to pilon.fasta [pilon] Writing NODE_141_length_2777_cov_19.844503:1-2777 changes to pilon.changes [pilon] Writing updated NODE_141_length_2777_cov_19.844503_pilon to pilon.fasta [pilon] Writing NODE_142_length_2772_cov_16.791399:1-2772 changes to pilon.changes [pilon] Writing updated NODE_142_length_2772_cov_16.791399_pilon to pilon.fasta [pilon] Writing NODE_143_length_2771_cov_27.444906:1-2771 changes to pilon.changes [pilon] Writing updated NODE_143_length_2771_cov_27.444906_pilon to pilon.fasta [pilon] Writing NODE_144_length_2760_cov_19.953013:1-2760 changes to pilon.changes [pilon] Writing updated NODE_144_length_2760_cov_19.953013_pilon to pilon.fasta [pilon] Writing NODE_145_length_2758_cov_23.789154:1-2758 changes to pilon.changes [pilon] Writing updated NODE_145_length_2758_cov_23.789154_pilon to pilon.fasta [pilon] Writing NODE_146_length_2746_cov_2.645333:1-2746 changes to pilon.changes [pilon] Writing updated NODE_146_length_2746_cov_2.645333_pilon to pilon.fasta [pilon] Writing NODE_147_length_2730_cov_13.704101:1-2730 changes to pilon.changes [pilon] Writing updated NODE_147_length_2730_cov_13.704101_pilon to pilon.fasta [pilon] Writing NODE_148_length_2730_cov_10.183595:1-2730 changes to pilon.changes [pilon] Writing updated NODE_148_length_2730_cov_10.183595_pilon to pilon.fasta [pilon] Writing NODE_149_length_2729_cov_21.815567:1-2729 changes to pilon.changes [pilon] Writing updated NODE_149_length_2729_cov_21.815567_pilon to pilon.fasta [pilon] Writing NODE_150_length_2727_cov_28.625863:1-2727 changes to pilon.changes [pilon] Writing updated NODE_150_length_2727_cov_28.625863_pilon to pilon.fasta [pilon] Writing NODE_151_length_2719_cov_2.652040:1-2719 changes to pilon.changes [pilon] Writing updated NODE_151_length_2719_cov_2.652040_pilon to pilon.fasta [pilon] Writing NODE_152_length_2710_cov_3.896485:1-2710 changes to pilon.changes [pilon] Writing updated NODE_152_length_2710_cov_3.896485_pilon to pilon.fasta [pilon] Writing NODE_153_length_2702_cov_20.320031:1-2702 changes to pilon.changes [pilon] Writing updated NODE_153_length_2702_cov_20.320031_pilon to pilon.fasta [pilon] Writing NODE_154_length_2702_cov_10.435878:1-2702 changes to pilon.changes [pilon] Writing updated NODE_154_length_2702_cov_10.435878_pilon to pilon.fasta [pilon] Writing NODE_155_length_2700_cov_2.160140:1-2700 changes to pilon.changes [pilon] Writing updated NODE_155_length_2700_cov_2.160140_pilon to pilon.fasta [pilon] Writing NODE_156_length_2699_cov_13.503103:1-2699 changes to pilon.changes [pilon] Writing updated NODE_156_length_2699_cov_13.503103_pilon to pilon.fasta [pilon] Writing NODE_157_length_2699_cov_2.934445:1-2699 changes to pilon.changes [pilon] Writing updated NODE_157_length_2699_cov_2.934445_pilon to pilon.fasta [pilon] Writing NODE_158_length_2693_cov_21.666796:1-2693 changes to pilon.changes [pilon] Writing updated NODE_158_length_2693_cov_21.666796_pilon to pilon.fasta [pilon] Writing NODE_159_length_2689_cov_4.562695:1-2689 changes to pilon.changes [pilon] Writing updated NODE_159_length_2689_cov_4.562695_pilon to pilon.fasta [pilon] Writing NODE_160_length_2687_cov_23.586126:1-2687 changes to pilon.changes [pilon] Writing updated NODE_160_length_2687_cov_23.586126_pilon to pilon.fasta [pilon] Writing NODE_161_length_2685_cov_25.488690:1-2685 changes to pilon.changes [pilon] Writing updated NODE_161_length_2685_cov_25.488690_pilon to pilon.fasta [pilon] Writing NODE_162_length_2681_cov_16.390625:1-2681 changes to pilon.changes [pilon] Writing updated NODE_162_length_2681_cov_16.390625_pilon to pilon.fasta [pilon] Writing NODE_163_length_2672_cov_2.508428:1-2672 changes to pilon.changes [pilon] Writing updated NODE_163_length_2672_cov_2.508428_pilon to pilon.fasta [pilon] Writing NODE_164_length_2669_cov_11.443878:1-2669 changes to pilon.changes [pilon] Writing updated NODE_164_length_2669_cov_11.443878_pilon to pilon.fasta [pilon] Writing NODE_165_length_2650_cov_20.319494:1-2650 changes to pilon.changes [pilon] Writing updated NODE_165_length_2650_cov_20.319494_pilon to pilon.fasta [pilon] Writing NODE_166_length_2643_cov_16.902062:1-2643 changes to pilon.changes [pilon] Writing updated NODE_166_length_2643_cov_16.902062_pilon to pilon.fasta [pilon] Writing NODE_167_length_2633_cov_19.638535:1-2633 changes to pilon.changes [pilon] Writing updated NODE_167_length_2633_cov_19.638535_pilon to pilon.fasta [pilon] Writing NODE_168_length_2632_cov_29.219833:1-2632 changes to pilon.changes [pilon] Writing updated NODE_168_length_2632_cov_29.219833_pilon to pilon.fasta [pilon] Writing NODE_169_length_2609_cov_3.611334:1-2609 changes to pilon.changes [pilon] Writing updated NODE_169_length_2609_cov_3.611334_pilon to pilon.fasta [pilon] Writing NODE_170_length_2595_cov_13.356508:1-2595 changes to pilon.changes [pilon] Writing updated NODE_170_length_2595_cov_13.356508_pilon to pilon.fasta [pilon] Writing NODE_171_length_2591_cov_24.780162:1-2591 changes to pilon.changes [pilon] Writing updated NODE_171_length_2591_cov_24.780162_pilon to pilon.fasta [pilon] Writing NODE_172_length_2590_cov_2.557311:1-2590 changes to pilon.changes [pilon] Writing updated NODE_172_length_2590_cov_2.557311_pilon to pilon.fasta [pilon] Writing NODE_173_length_2588_cov_30.985407:1-2588 changes to pilon.changes [pilon] Writing updated NODE_173_length_2588_cov_30.985407_pilon to pilon.fasta [pilon] Writing NODE_174_length_2588_cov_17.717065:1-2588 changes to pilon.changes [pilon] Writing updated NODE_174_length_2588_cov_17.717065_pilon to pilon.fasta [pilon] Writing NODE_175_length_2582_cov_16.608289:1-2582 changes to pilon.changes [pilon] Writing updated NODE_175_length_2582_cov_16.608289_pilon to pilon.fasta [pilon] Writing NODE_176_length_2578_cov_39.774115:1-2578 changes to pilon.changes [pilon] Writing updated NODE_176_length_2578_cov_39.774115_pilon to pilon.fasta [pilon] Writing NODE_177_length_2573_cov_13.535481:1-2573 changes to pilon.changes [pilon] Writing updated NODE_177_length_2573_cov_13.535481_pilon to pilon.fasta [pilon] Writing NODE_178_length_2572_cov_2.940024:1-2572 changes to pilon.changes [pilon] Writing updated NODE_178_length_2572_cov_2.940024_pilon to pilon.fasta [pilon] Writing NODE_179_length_2566_cov_18.208998:1-2566 changes to pilon.changes [pilon] Writing updated NODE_179_length_2566_cov_18.208998_pilon to pilon.fasta [pilon] Writing NODE_180_length_2562_cov_6.788202:1-2562 changes to pilon.changes [pilon] Writing updated NODE_180_length_2562_cov_6.788202_pilon to pilon.fasta [pilon] Writing NODE_181_length_2561_cov_31.781148:1-2561 changes to pilon.changes [pilon] Writing updated NODE_181_length_2561_cov_31.781148_pilon to pilon.fasta [pilon] Writing NODE_182_length_2560_cov_27.303403:1-2560 changes to pilon.changes [pilon] Writing updated NODE_182_length_2560_cov_27.303403_pilon to pilon.fasta [pilon] Writing NODE_183_length_2559_cov_4.336341:1-2559 changes to pilon.changes [pilon] Writing updated NODE_183_length_2559_cov_4.336341_pilon to pilon.fasta [pilon] Writing NODE_184_length_2557_cov_21.404351:1-2557 changes to pilon.changes [pilon] Writing updated NODE_184_length_2557_cov_21.404351_pilon to pilon.fasta [pilon] Writing NODE_185_length_2557_cov_16.428571:1-2557 changes to pilon.changes [pilon] Writing updated NODE_185_length_2557_cov_16.428571_pilon to pilon.fasta [pilon] Writing NODE_186_length_2556_cov_10.400821:1-2556 changes to pilon.changes [pilon] Writing updated NODE_186_length_2556_cov_10.400821_pilon to pilon.fasta [pilon] Writing NODE_187_length_2555_cov_2.036976:1-2555 changes to pilon.changes [pilon] Writing updated NODE_187_length_2555_cov_2.036976_pilon to pilon.fasta [pilon] Writing NODE_188_length_2547_cov_13.906430:1-2547 changes to pilon.changes [pilon] Writing updated NODE_188_length_2547_cov_13.906430_pilon to pilon.fasta [pilon] Writing NODE_189_length_2546_cov_12.903918:1-2546 changes to pilon.changes [pilon] Writing updated NODE_189_length_2546_cov_12.903918_pilon to pilon.fasta [pilon] Writing NODE_190_length_2541_cov_29.038430:1-2541 changes to pilon.changes [pilon] Writing updated NODE_190_length_2541_cov_29.038430_pilon to pilon.fasta [pilon] Writing NODE_191_length_2537_cov_25.151904:1-2537 changes to pilon.changes [pilon] Writing updated NODE_191_length_2537_cov_25.151904_pilon to pilon.fasta [pilon] Writing NODE_192_length_2533_cov_16.427861:1-2533 changes to pilon.changes [pilon] Writing updated NODE_192_length_2533_cov_16.427861_pilon to pilon.fasta [pilon] Writing NODE_193_length_2532_cov_24.176690:1-2532 changes to pilon.changes [pilon] Writing updated NODE_193_length_2532_cov_24.176690_pilon to pilon.fasta [pilon] Writing NODE_194_length_2532_cov_3.437578:1-2532 changes to pilon.changes [pilon] Writing updated NODE_194_length_2532_cov_3.437578_pilon to pilon.fasta [pilon] Writing NODE_195_length_2527_cov_2.384456:1-2527 changes to pilon.changes [pilon] Writing updated NODE_195_length_2527_cov_2.384456_pilon to pilon.fasta [pilon] Writing NODE_196_length_2522_cov_15.932528:1-2522 changes to pilon.changes [pilon] Writing updated NODE_196_length_2522_cov_15.932528_pilon to pilon.fasta [pilon] Writing NODE_197_length_2516_cov_32.091858:1-2516 changes to pilon.changes [pilon] Writing updated NODE_197_length_2516_cov_32.091858_pilon to pilon.fasta [pilon] Writing NODE_198_length_2509_cov_12.711055:1-2509 changes to pilon.changes [pilon] Writing updated NODE_198_length_2509_cov_12.711055_pilon to pilon.fasta [pilon] Writing NODE_199_length_2503_cov_21.462217:1-2503 changes to pilon.changes [pilon] Writing updated NODE_199_length_2503_cov_21.462217_pilon to pilon.fasta [pilon] Writing NODE_200_length_2498_cov_7.501472:1-2498 changes to pilon.changes [pilon] Writing updated NODE_200_length_2498_cov_7.501472_pilon to pilon.fasta [pilon] Writing NODE_201_length_2496_cov_11.999579:1-2496 changes to pilon.changes [pilon] Writing updated NODE_201_length_2496_cov_11.999579_pilon to pilon.fasta [pilon] Writing NODE_202_length_2492_cov_19.819907:1-2492 changes to pilon.changes [pilon] Writing updated NODE_202_length_2492_cov_19.819907_pilon to pilon.fasta [pilon] Writing NODE_203_length_2492_cov_2.502320:1-2492 changes to pilon.changes [pilon] Writing updated NODE_203_length_2492_cov_2.502320_pilon to pilon.fasta [pilon] Writing NODE_204_length_2483_cov_23.551651:1-2483 changes to pilon.changes [pilon] Writing updated NODE_204_length_2483_cov_23.551651_pilon to pilon.fasta [pilon] Writing NODE_205_length_2481_cov_11.781356:1-2481 changes to pilon.changes [pilon] Writing updated NODE_205_length_2481_cov_11.781356_pilon to pilon.fasta [pilon] Writing NODE_206_length_2480_cov_21.866469:1-2480 changes to pilon.changes [pilon] Writing updated NODE_206_length_2480_cov_21.866469_pilon to pilon.fasta [pilon] Writing NODE_207_length_2475_cov_2.161003:1-2475 changes to pilon.changes [pilon] Writing updated NODE_207_length_2475_cov_2.161003_pilon to pilon.fasta [pilon] Writing NODE_208_length_2473_cov_14.991922:1-2473 changes to pilon.changes [pilon] Writing updated NODE_208_length_2473_cov_14.991922_pilon to pilon.fasta [pilon] Writing NODE_209_length_2473_cov_2.183673:1-2473 changes to pilon.changes [pilon] Writing updated NODE_209_length_2473_cov_2.183673_pilon to pilon.fasta [pilon] Writing NODE_210_length_2471_cov_21.806809:1-2471 changes to pilon.changes [pilon] Writing updated NODE_210_length_2471_cov_21.806809_pilon to pilon.fasta [pilon] Writing NODE_211_length_2469_cov_12.739779:1-2469 changes to pilon.changes [pilon] Writing updated NODE_211_length_2469_cov_12.739779_pilon to pilon.fasta [pilon] Writing NODE_212_length_2468_cov_32.813379:1-2468 changes to pilon.changes [pilon] Writing updated NODE_212_length_2468_cov_32.813379_pilon to pilon.fasta [pilon] Writing NODE_213_length_2462_cov_19.754806:1-2462 changes to pilon.changes [pilon] Writing updated NODE_213_length_2462_cov_19.754806_pilon to pilon.fasta [pilon] Writing NODE_214_length_2460_cov_11.129115:1-2460 changes to pilon.changes [pilon] Writing updated NODE_214_length_2460_cov_11.129115_pilon to pilon.fasta [pilon] Writing NODE_215_length_2458_cov_9.344031:1-2458 changes to pilon.changes [pilon] Writing updated NODE_215_length_2458_cov_9.344031_pilon to pilon.fasta [pilon] Writing NODE_216_length_2449_cov_30.600086:1-2449 changes to pilon.changes [pilon] Writing updated NODE_216_length_2449_cov_30.600086_pilon to pilon.fasta [pilon] Writing NODE_217_length_2438_cov_25.635304:1-2438 changes to pilon.changes [pilon] Writing updated NODE_217_length_2438_cov_25.635304_pilon to pilon.fasta [pilon] Writing NODE_218_length_2437_cov_8.039292:1-2437 changes to pilon.changes [pilon] Writing updated NODE_218_length_2437_cov_8.039292_pilon to pilon.fasta [pilon] Writing NODE_219_length_2434_cov_1.327281:1-2434 changes to pilon.changes [pilon] Writing updated NODE_219_length_2434_cov_1.327281_pilon to pilon.fasta [pilon] Writing NODE_220_length_2433_cov_28.573097:1-2433 changes to pilon.changes [pilon] Writing updated NODE_220_length_2433_cov_28.573097_pilon to pilon.fasta [pilon] Writing NODE_221_length_2431_cov_15.611688:1-2431 changes to pilon.changes [pilon] Writing updated NODE_221_length_2431_cov_15.611688_pilon to pilon.fasta [pilon] Writing NODE_222_length_2427_cov_29.304857:1-2427 changes to pilon.changes [pilon] Writing updated NODE_222_length_2427_cov_29.304857_pilon to pilon.fasta [pilon] Writing NODE_223_length_2426_cov_1.926247:1-2426 changes to pilon.changes [pilon] Writing updated NODE_223_length_2426_cov_1.926247_pilon to pilon.fasta [pilon] Writing NODE_224_length_2417_cov_4.661585:1-2417 changes to pilon.changes [pilon] Writing updated NODE_224_length_2417_cov_4.661585_pilon to pilon.fasta [pilon] Writing NODE_225_length_2414_cov_26.068905:1-2414 changes to pilon.changes [pilon] Writing updated NODE_225_length_2414_cov_26.068905_pilon to pilon.fasta [pilon] Writing NODE_226_length_2414_cov_15.551679:1-2414 changes to pilon.changes [pilon] Writing updated NODE_226_length_2414_cov_15.551679_pilon to pilon.fasta [pilon] Writing NODE_227_length_2414_cov_13.072394:1-2414 changes to pilon.changes [pilon] Writing updated NODE_227_length_2414_cov_13.072394_pilon to pilon.fasta [pilon] Writing NODE_228_length_2412_cov_16.491925:1-2412 changes to pilon.changes [pilon] Writing updated NODE_228_length_2412_cov_16.491925_pilon to pilon.fasta [pilon] Writing NODE_229_length_2409_cov_19.367133:1-2409 changes to pilon.changes [pilon] Writing updated NODE_229_length_2409_cov_19.367133_pilon to pilon.fasta [pilon] Writing NODE_230_length_2408_cov_1.828596:1-2408 changes to pilon.changes [pilon] Writing updated NODE_230_length_2408_cov_1.828596_pilon to pilon.fasta [pilon] Writing NODE_231_length_2407_cov_21.346457:1-2407 changes to pilon.changes [pilon] Writing updated NODE_231_length_2407_cov_21.346457_pilon to pilon.fasta [pilon] Writing NODE_232_length_2407_cov_10.857830:1-2407 changes to pilon.changes [pilon] Writing updated NODE_232_length_2407_cov_10.857830_pilon to pilon.fasta [pilon] Writing NODE_233_length_2405_cov_26.254816:1-2405 changes to pilon.changes [pilon] Writing updated NODE_233_length_2405_cov_26.254816_pilon to pilon.fasta [pilon] Writing NODE_234_length_2398_cov_4.203338:1-2398 changes to pilon.changes [pilon] Writing updated NODE_234_length_2398_cov_4.203338_pilon to pilon.fasta [pilon] Writing NODE_235_length_2397_cov_21.743849:1-2397 changes to pilon.changes [pilon] Writing updated NODE_235_length_2397_cov_21.743849_pilon to pilon.fasta [pilon] Writing NODE_236_length_2392_cov_37.832232:1-2392 changes to pilon.changes [pilon] Writing updated NODE_236_length_2392_cov_37.832232_pilon to pilon.fasta [pilon] Writing NODE_237_length_2390_cov_12.184222:1-2390 changes to pilon.changes [pilon] Writing updated NODE_237_length_2390_cov_12.184222_pilon to pilon.fasta [pilon] Writing NODE_238_length_2390_cov_8.895108:1-2390 changes to pilon.changes [pilon] Writing updated NODE_238_length_2390_cov_8.895108_pilon to pilon.fasta [pilon] Writing NODE_239_length_2380_cov_14.370518:1-2380 changes to pilon.changes [pilon] Writing updated NODE_239_length_2380_cov_14.370518_pilon to pilon.fasta [pilon] Writing NODE_240_length_2377_cov_3.861702:1-2377 changes to pilon.changes [pilon] Writing updated NODE_240_length_2377_cov_3.861702_pilon to pilon.fasta [pilon] Writing NODE_241_length_2374_cov_13.274301:1-2374 changes to pilon.changes [pilon] Writing updated NODE_241_length_2374_cov_13.274301_pilon to pilon.fasta [pilon] Writing NODE_242_length_2372_cov_2.565082:1-2372 changes to pilon.changes [pilon] Writing updated NODE_242_length_2372_cov_2.565082_pilon to pilon.fasta [pilon] Writing NODE_243_length_2365_cov_17.463458:1-2365 changes to pilon.changes [pilon] Writing updated NODE_243_length_2365_cov_17.463458_pilon to pilon.fasta [pilon] Writing NODE_244_length_2358_cov_35.762181:1-2358 changes to pilon.changes [pilon] Writing updated NODE_244_length_2358_cov_35.762181_pilon to pilon.fasta [pilon] Writing NODE_245_length_2357_cov_23.882826:1-2357 changes to pilon.changes [pilon] Writing updated NODE_245_length_2357_cov_23.882826_pilon to pilon.fasta [pilon] Writing NODE_246_length_2351_cov_8.471300:1-2351 changes to pilon.changes [pilon] Writing updated NODE_246_length_2351_cov_8.471300_pilon to pilon.fasta [pilon] Writing NODE_247_length_2350_cov_22.052490:1-2350 changes to pilon.changes [pilon] Writing updated NODE_247_length_2350_cov_22.052490_pilon to pilon.fasta [pilon] Writing NODE_248_length_2347_cov_20.100180:1-2347 changes to pilon.changes [pilon] Writing updated NODE_248_length_2347_cov_20.100180_pilon to pilon.fasta [pilon] Writing NODE_249_length_2345_cov_26.506745:1-2345 changes to pilon.changes [pilon] Writing updated NODE_249_length_2345_cov_26.506745_pilon to pilon.fasta [pilon] Writing NODE_250_length_2340_cov_25.841370:1-2340 changes to pilon.changes [pilon] Writing updated NODE_250_length_2340_cov_25.841370_pilon to pilon.fasta [pilon] Writing NODE_251_length_2336_cov_3.077652:1-2336 changes to pilon.changes [pilon] Writing updated NODE_251_length_2336_cov_3.077652_pilon to pilon.fasta [pilon] Writing NODE_252_length_2333_cov_27.566908:1-2333 changes to pilon.changes [pilon] Writing updated NODE_252_length_2333_cov_27.566908_pilon to pilon.fasta [pilon] Writing NODE_253_length_2327_cov_2.927471:1-2327 changes to pilon.changes [pilon] Writing updated NODE_253_length_2327_cov_2.927471_pilon to pilon.fasta [pilon] Writing NODE_254_length_2324_cov_21.735815:1-2324 changes to pilon.changes [pilon] Writing updated NODE_254_length_2324_cov_21.735815_pilon to pilon.fasta [pilon] Writing NODE_255_length_2321_cov_25.955000:1-2321 changes to pilon.changes [pilon] Writing updated NODE_255_length_2321_cov_25.955000_pilon to pilon.fasta [pilon] Writing NODE_256_length_2315_cov_19.724248:1-2315 changes to pilon.changes [pilon] Writing updated NODE_256_length_2315_cov_19.724248_pilon to pilon.fasta [pilon] Writing NODE_257_length_2313_cov_18.074361:1-2313 changes to pilon.changes [pilon] Writing updated NODE_257_length_2313_cov_18.074361_pilon to pilon.fasta [pilon] Writing NODE_258_length_2310_cov_21.137506:1-2310 changes to pilon.changes [pilon] Writing updated NODE_258_length_2310_cov_21.137506_pilon to pilon.fasta [pilon] Writing NODE_259_length_2309_cov_3.734918:1-2309 changes to pilon.changes [pilon] Writing updated NODE_259_length_2309_cov_3.734918_pilon to pilon.fasta [pilon] Writing NODE_260_length_2307_cov_12.562672:1-2307 changes to pilon.changes [pilon] Writing updated NODE_260_length_2307_cov_12.562672_pilon to pilon.fasta [pilon] Writing NODE_261_length_2305_cov_2.149267:1-2305 changes to pilon.changes [pilon] Writing updated NODE_261_length_2305_cov_2.149267_pilon to pilon.fasta [pilon] Writing NODE_262_length_2304_cov_22.749885:1-2304 changes to pilon.changes [pilon] Writing updated NODE_262_length_2304_cov_22.749885_pilon to pilon.fasta [pilon] Writing NODE_263_length_2303_cov_19.561870:1-2303 changes to pilon.changes [pilon] Writing updated NODE_263_length_2303_cov_19.561870_pilon to pilon.fasta [pilon] Writing NODE_264_length_2301_cov_11.114220:1-2301 changes to pilon.changes [pilon] Writing updated NODE_264_length_2301_cov_11.114220_pilon to pilon.fasta [pilon] Writing NODE_265_length_2299_cov_33.646465:1-2299 changes to pilon.changes [pilon] Writing updated NODE_265_length_2299_cov_33.646465_pilon to pilon.fasta [pilon] Writing NODE_266_length_2298_cov_17.119890:1-2298 changes to pilon.changes [pilon] Writing updated NODE_266_length_2298_cov_17.119890_pilon to pilon.fasta [pilon] Writing NODE_267_length_2297_cov_17.295496:1-2297 changes to pilon.changes [pilon] Writing updated NODE_267_length_2297_cov_17.295496_pilon to pilon.fasta [pilon] Writing NODE_268_length_2296_cov_21.114023:1-2296 changes to pilon.changes [pilon] Writing updated NODE_268_length_2296_cov_21.114023_pilon to pilon.fasta [pilon] Writing NODE_269_length_2296_cov_17.445977:1-2296 changes to pilon.changes [pilon] Writing updated NODE_269_length_2296_cov_17.445977_pilon to pilon.fasta [pilon] Writing NODE_270_length_2295_cov_2.260350:1-2295 changes to pilon.changes [pilon] Writing updated NODE_270_length_2295_cov_2.260350_pilon to pilon.fasta [pilon] Writing NODE_271_length_2294_cov_28.031753:1-2294 changes to pilon.changes [pilon] Writing updated NODE_271_length_2294_cov_28.031753_pilon to pilon.fasta [pilon] Writing NODE_272_length_2292_cov_12.960387:1-2292 changes to pilon.changes [pilon] Writing updated NODE_272_length_2292_cov_12.960387_pilon to pilon.fasta [pilon] Writing NODE_273_length_2291_cov_31.603226:1-2291 changes to pilon.changes [pilon] Writing updated NODE_273_length_2291_cov_31.603226_pilon to pilon.fasta [pilon] Writing NODE_274_length_2291_cov_1.837327:1-2291 changes to pilon.changes [pilon] Writing updated NODE_274_length_2291_cov_1.837327_pilon to pilon.fasta [pilon] Writing NODE_275_length_2290_cov_10.723375:1-2290 changes to pilon.changes [pilon] Writing updated NODE_275_length_2290_cov_10.723375_pilon to pilon.fasta [pilon] Writing NODE_276_length_2289_cov_2.783210:1-2289 changes to pilon.changes [pilon] Writing updated NODE_276_length_2289_cov_2.783210_pilon to pilon.fasta [pilon] Writing NODE_277_length_2288_cov_18.475773:1-2288 changes to pilon.changes [pilon] Writing updated NODE_277_length_2288_cov_18.475773_pilon to pilon.fasta [pilon] Writing NODE_278_length_2287_cov_16.821791:1-2287 changes to pilon.changes [pilon] Writing updated NODE_278_length_2287_cov_16.821791_pilon to pilon.fasta [pilon] Writing NODE_279_length_2285_cov_16.660351:1-2285 changes to pilon.changes [pilon] Writing updated NODE_279_length_2285_cov_16.660351_pilon to pilon.fasta [pilon] Writing NODE_280_length_2278_cov_18.790913:1-2278 changes to pilon.changes [pilon] Writing updated NODE_280_length_2278_cov_18.790913_pilon to pilon.fasta [pilon] Writing NODE_281_length_2277_cov_12.262987:1-2277 changes to pilon.changes [pilon] Writing updated NODE_281_length_2277_cov_12.262987_pilon to pilon.fasta [pilon] Writing NODE_282_length_2273_cov_38.801580:1-2273 changes to pilon.changes [pilon] Writing updated NODE_282_length_2273_cov_38.801580_pilon to pilon.fasta [pilon] Writing NODE_283_length_2272_cov_18.746629:1-2272 changes to pilon.changes [pilon] Writing updated NODE_283_length_2272_cov_18.746629_pilon to pilon.fasta [pilon] Writing NODE_284_length_2272_cov_1.907020:1-2272 changes to pilon.changes [pilon] Writing updated NODE_284_length_2272_cov_1.907020_pilon to pilon.fasta [pilon] Writing NODE_285_length_2271_cov_16.931628:1-2271 changes to pilon.changes [pilon] Writing updated NODE_285_length_2271_cov_16.931628_pilon to pilon.fasta [pilon] Writing NODE_286_length_2270_cov_14.872499:1-2270 changes to pilon.changes [pilon] Writing updated NODE_286_length_2270_cov_14.872499_pilon to pilon.fasta [pilon] Writing NODE_287_length_2269_cov_31.664804:1-2269 changes to pilon.changes [pilon] Writing updated NODE_287_length_2269_cov_31.664804_pilon to pilon.fasta [pilon] Writing NODE_288_length_2268_cov_11.795994:1-2268 changes to pilon.changes [pilon] Writing updated NODE_288_length_2268_cov_11.795994_pilon to pilon.fasta [pilon] Writing NODE_289_length_2267_cov_2.401678:1-2267 changes to pilon.changes [pilon] Writing updated NODE_289_length_2267_cov_2.401678_pilon to pilon.fasta [pilon] Writing NODE_290_length_2254_cov_21.884669:1-2254 changes to pilon.changes [pilon] Writing updated NODE_290_length_2254_cov_21.884669_pilon to pilon.fasta [pilon] Writing NODE_291_length_2254_cov_16.993436:1-2254 changes to pilon.changes [pilon] Writing updated NODE_291_length_2254_cov_16.993436_pilon to pilon.fasta [pilon] Writing NODE_292_length_2254_cov_2.046414:1-2254 changes to pilon.changes [pilon] Writing updated NODE_292_length_2254_cov_2.046414_pilon to pilon.fasta [pilon] Writing NODE_293_length_2250_cov_27.383279:1-2250 changes to pilon.changes [pilon] Writing updated NODE_293_length_2250_cov_27.383279_pilon to pilon.fasta [pilon] Writing NODE_294_length_2250_cov_19.184124:1-2250 changes to pilon.changes [pilon] Writing updated NODE_294_length_2250_cov_19.184124_pilon to pilon.fasta [pilon] Writing NODE_295_length_2245_cov_24.419962:1-2245 changes to pilon.changes [pilon] Writing updated NODE_295_length_2245_cov_24.419962_pilon to pilon.fasta [pilon] Writing NODE_296_length_2245_cov_2.052260:1-2245 changes to pilon.changes [pilon] Writing updated NODE_296_length_2245_cov_2.052260_pilon to pilon.fasta [pilon] Writing NODE_297_length_2244_cov_2.933585:1-2244 changes to pilon.changes [pilon] Writing updated NODE_297_length_2244_cov_2.933585_pilon to pilon.fasta [pilon] Writing NODE_298_length_2243_cov_44.390198:1-2243 changes to pilon.changes [pilon] Writing updated NODE_298_length_2243_cov_44.390198_pilon to pilon.fasta [pilon] Writing NODE_299_length_2241_cov_19.910377:1-2241 changes to pilon.changes [pilon] Writing updated NODE_299_length_2241_cov_19.910377_pilon to pilon.fasta [pilon] Writing NODE_300_length_2239_cov_19.581209:1-2239 changes to pilon.changes [pilon] Writing updated NODE_300_length_2239_cov_19.581209_pilon to pilon.fasta [pilon] Writing NODE_301_length_2238_cov_25.998111:1-2238 changes to pilon.changes [pilon] Writing updated NODE_301_length_2238_cov_25.998111_pilon to pilon.fasta [pilon] Writing NODE_302_length_2238_cov_22.620217:1-2238 changes to pilon.changes [pilon] Writing updated NODE_302_length_2238_cov_22.620217_pilon to pilon.fasta [pilon] Writing NODE_303_length_2238_cov_11.794521:1-2238 changes to pilon.changes [pilon] Writing updated NODE_303_length_2238_cov_11.794521_pilon to pilon.fasta [pilon] Writing NODE_304_length_2236_cov_1.414657:1-2236 changes to pilon.changes [pilon] Writing updated NODE_304_length_2236_cov_1.414657_pilon to pilon.fasta [pilon] Writing NODE_305_length_2235_cov_9.442289:1-2235 changes to pilon.changes [pilon] Writing updated NODE_305_length_2235_cov_9.442289_pilon to pilon.fasta [pilon] Writing NODE_306_length_2234_cov_2.259347:1-2234 changes to pilon.changes [pilon] Writing updated NODE_306_length_2234_cov_2.259347_pilon to pilon.fasta [pilon] Writing NODE_307_length_2233_cov_12.235795:1-2233 changes to pilon.changes [pilon] Writing updated NODE_307_length_2233_cov_12.235795_pilon to pilon.fasta [pilon] Writing NODE_308_length_2230_cov_24.521574:1-2230 changes to pilon.changes [pilon] Writing updated NODE_308_length_2230_cov_24.521574_pilon to pilon.fasta [pilon] Writing NODE_309_length_2227_cov_13.584520:1-2227 changes to pilon.changes [pilon] Writing updated NODE_309_length_2227_cov_13.584520_pilon to pilon.fasta [pilon] Writing NODE_310_length_2221_cov_15.293333:1-2221 changes to pilon.changes [pilon] Writing updated NODE_310_length_2221_cov_15.293333_pilon to pilon.fasta [pilon] Writing NODE_311_length_2218_cov_27.407248:1-2218 changes to pilon.changes [pilon] Writing updated NODE_311_length_2218_cov_27.407248_pilon to pilon.fasta [pilon] Writing NODE_312_length_2216_cov_12.433890:1-2216 changes to pilon.changes [pilon] Writing updated NODE_312_length_2216_cov_12.433890_pilon to pilon.fasta [pilon] Writing NODE_313_length_2215_cov_17.454632:1-2215 changes to pilon.changes [pilon] Writing updated NODE_313_length_2215_cov_17.454632_pilon to pilon.fasta [pilon] Writing NODE_314_length_2210_cov_33.163236:1-2210 changes to pilon.changes [pilon] Writing updated NODE_314_length_2210_cov_33.163236_pilon to pilon.fasta [pilon] Writing NODE_315_length_2206_cov_10.420624:1-2206 changes to pilon.changes [pilon] Writing updated NODE_315_length_2206_cov_10.420624_pilon to pilon.fasta [pilon] Writing NODE_316_length_2204_cov_2.891983:1-2204 changes to pilon.changes [pilon] Writing updated NODE_316_length_2204_cov_2.891983_pilon to pilon.fasta [pilon] Writing NODE_317_length_2203_cov_8.176753:1-2203 changes to pilon.changes [pilon] Writing updated NODE_317_length_2203_cov_8.176753_pilon to pilon.fasta [pilon] Writing NODE_318_length_2202_cov_2.386353:1-2202 changes to pilon.changes [pilon] Writing updated NODE_318_length_2202_cov_2.386353_pilon to pilon.fasta [pilon] Writing NODE_319_length_2200_cov_18.899471:1-2200 changes to pilon.changes [pilon] Writing updated NODE_319_length_2200_cov_18.899471_pilon to pilon.fasta [pilon] Writing NODE_320_length_2197_cov_1.812139:1-2197 changes to pilon.changes [pilon] Writing updated NODE_320_length_2197_cov_1.812139_pilon to pilon.fasta [pilon] Writing NODE_321_length_2187_cov_11.133107:1-2187 changes to pilon.changes [pilon] Writing updated NODE_321_length_2187_cov_11.133107_pilon to pilon.fasta [pilon] Writing NODE_322_length_2187_cov_1.195063:1-2187 changes to pilon.changes [pilon] Writing updated NODE_322_length_2187_cov_1.195063_pilon to pilon.fasta [pilon] Writing NODE_323_length_2185_cov_29.578973:1-2185 changes to pilon.changes [pilon] Writing updated NODE_323_length_2185_cov_29.578973_pilon to pilon.fasta [pilon] Writing NODE_324_length_2184_cov_20.730974:1-2184 changes to pilon.changes [pilon] Writing updated NODE_324_length_2184_cov_20.730974_pilon to pilon.fasta [pilon] Writing NODE_325_length_2177_cov_1.982490:1-2177 changes to pilon.changes [pilon] Writing updated NODE_325_length_2177_cov_1.982490_pilon to pilon.fasta [pilon] Writing NODE_326_length_2173_cov_22.433723:1-2173 changes to pilon.changes [pilon] Writing updated NODE_326_length_2173_cov_22.433723_pilon to pilon.fasta [pilon] Writing NODE_327_length_2171_cov_2.153171:1-2171 changes to pilon.changes [pilon] Writing updated NODE_327_length_2171_cov_2.153171_pilon to pilon.fasta [pilon] Writing NODE_328_length_2170_cov_21.729136:1-2170 changes to pilon.changes [pilon] Writing updated NODE_328_length_2170_cov_21.729136_pilon to pilon.fasta [pilon] Writing NODE_329_length_2168_cov_12.519297:1-2168 changes to pilon.changes [pilon] Writing updated NODE_329_length_2168_cov_12.519297_pilon to pilon.fasta [pilon] Writing NODE_330_length_2156_cov_31.485995:1-2156 changes to pilon.changes [pilon] Writing updated NODE_330_length_2156_cov_31.485995_pilon to pilon.fasta [pilon] Writing NODE_331_length_2156_cov_3.606880:1-2156 changes to pilon.changes [pilon] Writing updated NODE_331_length_2156_cov_3.606880_pilon to pilon.fasta [pilon] Writing NODE_332_length_2151_cov_33.338916:1-2151 changes to pilon.changes [pilon] Writing updated NODE_332_length_2151_cov_33.338916_pilon to pilon.fasta [pilon] Writing NODE_333_length_2151_cov_23.319212:1-2151 changes to pilon.changes [pilon] Writing updated NODE_333_length_2151_cov_23.319212_pilon to pilon.fasta [pilon] Writing NODE_334_length_2151_cov_1.993596:1-2151 changes to pilon.changes [pilon] Writing updated NODE_334_length_2151_cov_1.993596_pilon to pilon.fasta [pilon] Writing NODE_335_length_2146_cov_15.365432:1-2146 changes to pilon.changes [pilon] Writing updated NODE_335_length_2146_cov_15.365432_pilon to pilon.fasta [pilon] Writing NODE_336_length_2143_cov_25.504451:1-2143 changes to pilon.changes [pilon] Writing updated NODE_336_length_2143_cov_25.504451_pilon to pilon.fasta [pilon] Writing NODE_337_length_2142_cov_15.164275:1-2142 changes to pilon.changes [pilon] Writing updated NODE_337_length_2142_cov_15.164275_pilon to pilon.fasta [pilon] Writing NODE_338_length_2142_cov_2.984661:1-2142 changes to pilon.changes [pilon] Writing updated NODE_338_length_2142_cov_2.984661_pilon to pilon.fasta [pilon] Writing NODE_339_length_2138_cov_4.883490:1-2138 changes to pilon.changes [pilon] Writing updated NODE_339_length_2138_cov_4.883490_pilon to pilon.fasta [pilon] Writing NODE_340_length_2137_cov_35.948909:1-2137 changes to pilon.changes [pilon] Writing updated NODE_340_length_2137_cov_35.948909_pilon to pilon.fasta [pilon] Writing NODE_341_length_2135_cov_29.541708:1-2135 changes to pilon.changes [pilon] Writing updated NODE_341_length_2135_cov_29.541708_pilon to pilon.fasta [pilon] Writing NODE_342_length_2135_cov_19.872393:1-2135 changes to pilon.changes [pilon] Writing updated NODE_342_length_2135_cov_19.872393_pilon to pilon.fasta [pilon] Writing NODE_343_length_2135_cov_19.745780:1-2135 changes to pilon.changes [pilon] Writing updated NODE_343_length_2135_cov_19.745780_pilon to pilon.fasta [pilon] Writing NODE_344_length_2132_cov_19.515167:1-2132 changes to pilon.changes [pilon] Writing updated NODE_344_length_2132_cov_19.515167_pilon to pilon.fasta [pilon] Writing NODE_345_length_2132_cov_16.866733:1-2132 changes to pilon.changes [pilon] Writing updated NODE_345_length_2132_cov_16.866733_pilon to pilon.fasta [pilon] Writing NODE_346_length_2130_cov_15.836735:1-2130 changes to pilon.changes [pilon] Writing updated NODE_346_length_2130_cov_15.836735_pilon to pilon.fasta [pilon] Writing NODE_347_length_2129_cov_13.608068:1-2129 changes to pilon.changes [pilon] Writing updated NODE_347_length_2129_cov_13.608068_pilon to pilon.fasta [pilon] Writing NODE_348_length_2128_cov_16.395117:1-2128 changes to pilon.changes [pilon] Writing updated NODE_348_length_2128_cov_16.395117_pilon to pilon.fasta [pilon] Writing NODE_349_length_2127_cov_16.463609:1-2127 changes to pilon.changes [pilon] Writing updated NODE_349_length_2127_cov_16.463609_pilon to pilon.fasta [pilon] Writing NODE_350_length_2127_cov_3.560818:1-2127 changes to pilon.changes [pilon] Writing updated NODE_350_length_2127_cov_3.560818_pilon to pilon.fasta [pilon] Writing NODE_351_length_2124_cov_35.551672:1-2124 changes to pilon.changes [pilon] Writing updated NODE_351_length_2124_cov_35.551672_pilon to pilon.fasta [pilon] Writing NODE_352_length_2119_cov_26.080581:1-2119 changes to pilon.changes [pilon] Writing updated NODE_352_length_2119_cov_26.080581_pilon to pilon.fasta [pilon] Writing NODE_353_length_2119_cov_6.140641:1-2119 changes to pilon.changes [pilon] Writing updated NODE_353_length_2119_cov_6.140641_pilon to pilon.fasta [pilon] Writing NODE_354_length_2119_cov_5.273273:1-2119 changes to pilon.changes [pilon] Writing updated NODE_354_length_2119_cov_5.273273_pilon to pilon.fasta [pilon] Writing NODE_355_length_2119_cov_2.141141:1-2119 changes to pilon.changes [pilon] Writing updated NODE_355_length_2119_cov_2.141141_pilon to pilon.fasta [pilon] Writing NODE_356_length_2118_cov_8.535804:1-2118 changes to pilon.changes [pilon] Writing updated NODE_356_length_2118_cov_8.535804_pilon to pilon.fasta [pilon] Writing NODE_357_length_2117_cov_17.620240:1-2117 changes to pilon.changes [pilon] Writing updated NODE_357_length_2117_cov_17.620240_pilon to pilon.fasta [pilon] Writing NODE_358_length_2115_cov_21.604814:1-2115 changes to pilon.changes [pilon] Writing updated NODE_358_length_2115_cov_21.604814_pilon to pilon.fasta [pilon] Writing NODE_359_length_2111_cov_9.506030:1-2111 changes to pilon.changes [pilon] Writing updated NODE_359_length_2111_cov_9.506030_pilon to pilon.fasta [pilon] Writing NODE_360_length_2108_cov_20.659789:1-2108 changes to pilon.changes [pilon] Writing updated NODE_360_length_2108_cov_20.659789_pilon to pilon.fasta [pilon] Writing NODE_361_length_2108_cov_2.399094:1-2108 changes to pilon.changes [pilon] Writing updated NODE_361_length_2108_cov_2.399094_pilon to pilon.fasta [pilon] Writing NODE_362_length_2107_cov_19.937563:1-2107 changes to pilon.changes [pilon] Writing updated NODE_362_length_2107_cov_19.937563_pilon to pilon.fasta [pilon] Writing NODE_363_length_2106_cov_31.396474:1-2106 changes to pilon.changes [pilon] Writing updated NODE_363_length_2106_cov_31.396474_pilon to pilon.fasta [pilon] Writing NODE_364_length_2106_cov_28.681612:1-2106 changes to pilon.changes [pilon] Writing updated NODE_364_length_2106_cov_28.681612_pilon to pilon.fasta [pilon] Writing NODE_365_length_2104_cov_1.073626:1-2104 changes to pilon.changes [pilon] Writing updated NODE_365_length_2104_cov_1.073626_pilon to pilon.fasta [pilon] Writing NODE_366_length_2103_cov_4.849142:1-2103 changes to pilon.changes [pilon] Writing updated NODE_366_length_2103_cov_4.849142_pilon to pilon.fasta [pilon] Writing NODE_367_length_2098_cov_2.708144:1-2098 changes to pilon.changes [pilon] Writing updated NODE_367_length_2098_cov_2.708144_pilon to pilon.fasta [pilon] Writing NODE_368_length_2098_cov_1.960040:1-2098 changes to pilon.changes [pilon] Writing updated NODE_368_length_2098_cov_1.960040_pilon to pilon.fasta [pilon] Writing NODE_369_length_2096_cov_23.930633:1-2096 changes to pilon.changes [pilon] Writing updated NODE_369_length_2096_cov_23.930633_pilon to pilon.fasta [pilon] Writing NODE_370_length_2095_cov_24.631206:1-2095 changes to pilon.changes [pilon] Writing updated NODE_370_length_2095_cov_24.631206_pilon to pilon.fasta [pilon] Writing NODE_371_length_2095_cov_4.531915:1-2095 changes to pilon.changes [pilon] Writing updated NODE_371_length_2095_cov_4.531915_pilon to pilon.fasta [pilon] Writing NODE_372_length_2090_cov_15.797867:1-2090 changes to pilon.changes [pilon] Writing updated NODE_372_length_2090_cov_15.797867_pilon to pilon.fasta [pilon] Writing NODE_373_length_2090_cov_13.621127:1-2090 changes to pilon.changes [pilon] Writing updated NODE_373_length_2090_cov_13.621127_pilon to pilon.fasta [pilon] Writing NODE_374_length_2089_cov_2.665650:1-2089 changes to pilon.changes [pilon] Writing updated NODE_374_length_2089_cov_2.665650_pilon to pilon.fasta [pilon] Writing NODE_375_length_2087_cov_2.901322:1-2087 changes to pilon.changes [pilon] Writing updated NODE_375_length_2087_cov_2.901322_pilon to pilon.fasta [pilon] Writing NODE_376_length_2086_cov_23.770992:1-2086 changes to pilon.changes [pilon] Writing updated NODE_376_length_2086_cov_23.770992_pilon to pilon.fasta [pilon] Writing NODE_377_length_2086_cov_14.275827:1-2086 changes to pilon.changes [pilon] Writing updated NODE_377_length_2086_cov_14.275827_pilon to pilon.fasta [pilon] Writing NODE_378_length_2080_cov_23.568657:1-2080 changes to pilon.changes [pilon] Writing updated NODE_378_length_2080_cov_23.568657_pilon to pilon.fasta [pilon] Writing NODE_379_length_2078_cov_7.897292:1-2078 changes to pilon.changes [pilon] Writing updated NODE_379_length_2078_cov_7.897292_pilon to pilon.fasta [pilon] Writing NODE_380_length_2076_cov_32.193862:1-2076 changes to pilon.changes [pilon] Writing updated NODE_380_length_2076_cov_32.193862_pilon to pilon.fasta [pilon] Writing NODE_381_length_2072_cov_23.517683:1-2072 changes to pilon.changes [pilon] Writing updated NODE_381_length_2072_cov_23.517683_pilon to pilon.fasta [pilon] Writing NODE_382_length_2071_cov_3.298462:1-2071 changes to pilon.changes [pilon] Writing updated NODE_382_length_2071_cov_3.298462_pilon to pilon.fasta [pilon] Writing NODE_383_length_2066_cov_18.536761:1-2066 changes to pilon.changes [pilon] Writing updated NODE_383_length_2066_cov_18.536761_pilon to pilon.fasta [pilon] Writing NODE_384_length_2065_cov_24.959362:1-2065 changes to pilon.changes [pilon] Writing updated NODE_384_length_2065_cov_24.959362_pilon to pilon.fasta [pilon] Writing NODE_385_length_2065_cov_9.805041:1-2065 changes to pilon.changes [pilon] Writing updated NODE_385_length_2065_cov_9.805041_pilon to pilon.fasta [pilon] Writing NODE_386_length_2064_cov_29.700978:1-2064 changes to pilon.changes [pilon] Writing updated NODE_386_length_2064_cov_29.700978_pilon to pilon.fasta [pilon] Writing NODE_387_length_2063_cov_14.794542:1-2063 changes to pilon.changes [pilon] Writing updated NODE_387_length_2063_cov_14.794542_pilon to pilon.fasta [pilon] Writing NODE_388_length_2062_cov_27.501803:1-2062 changes to pilon.changes [pilon] Writing updated NODE_388_length_2062_cov_27.501803_pilon to pilon.fasta [pilon] Writing NODE_389_length_2062_cov_1.777950:1-2062 changes to pilon.changes [pilon] Writing updated NODE_389_length_2062_cov_1.777950_pilon to pilon.fasta [pilon] Writing NODE_390_length_2062_cov_1.743946:1-2062 changes to pilon.changes [pilon] Writing updated NODE_390_length_2062_cov_1.743946_pilon to pilon.fasta [pilon] Writing NODE_391_length_2061_cov_22.628866:1-2061 changes to pilon.changes [pilon] Writing updated NODE_391_length_2061_cov_22.628866_pilon to pilon.fasta [pilon] Writing NODE_392_length_2061_cov_2.015979:1-2061 changes to pilon.changes [pilon] Writing updated NODE_392_length_2061_cov_2.015979_pilon to pilon.fasta [pilon] Writing NODE_393_length_2061_cov_1.969072:1-2061 changes to pilon.changes [pilon] Writing updated NODE_393_length_2061_cov_1.969072_pilon to pilon.fasta [pilon] Writing NODE_394_length_2058_cov_7.701084:1-2058 changes to pilon.changes [pilon] Writing updated NODE_394_length_2058_cov_7.701084_pilon to pilon.fasta [pilon] Writing NODE_395_length_2055_cov_29.282834:1-2055 changes to pilon.changes [pilon] Writing updated NODE_395_length_2055_cov_29.282834_pilon to pilon.fasta [pilon] Writing NODE_396_length_2055_cov_2.105481:1-2055 changes to pilon.changes [pilon] Writing updated NODE_396_length_2055_cov_2.105481_pilon to pilon.fasta [pilon] Writing NODE_397_length_2052_cov_6.319006:1-2052 changes to pilon.changes [pilon] Writing updated NODE_397_length_2052_cov_6.319006_pilon to pilon.fasta [pilon] Writing NODE_398_length_2051_cov_6.570466:1-2051 changes to pilon.changes [pilon] Writing updated NODE_398_length_2051_cov_6.570466_pilon to pilon.fasta [pilon] Writing NODE_399_length_2048_cov_10.601972:1-2048 changes to pilon.changes [pilon] Writing updated NODE_399_length_2048_cov_10.601972_pilon to pilon.fasta [pilon] Writing NODE_400_length_2046_cov_22.179221:1-2046 changes to pilon.changes [pilon] Writing updated NODE_400_length_2046_cov_22.179221_pilon to pilon.fasta [pilon] Writing NODE_401_length_2046_cov_19.798961:1-2046 changes to pilon.changes [pilon] Writing updated NODE_401_length_2046_cov_19.798961_pilon to pilon.fasta [pilon] Writing NODE_402_length_2045_cov_1.426195:1-2045 changes to pilon.changes [pilon] Writing updated NODE_402_length_2045_cov_1.426195_pilon to pilon.fasta [pilon] Writing NODE_403_length_2044_cov_12.096204:1-2044 changes to pilon.changes [pilon] Writing updated NODE_403_length_2044_cov_12.096204_pilon to pilon.fasta [pilon] Writing NODE_404_length_2043_cov_2.442248:1-2043 changes to pilon.changes [pilon] Writing updated NODE_404_length_2043_cov_2.442248_pilon to pilon.fasta [pilon] Writing NODE_405_length_2042_cov_12.970328:1-2042 changes to pilon.changes [pilon] Writing updated NODE_405_length_2042_cov_12.970328_pilon to pilon.fasta [pilon] Writing NODE_406_length_2040_cov_20.593538:1-2040 changes to pilon.changes [pilon] Writing updated NODE_406_length_2040_cov_20.593538_pilon to pilon.fasta [pilon] Writing NODE_407_length_2040_cov_9.911933:1-2040 changes to pilon.changes [pilon] Writing updated NODE_407_length_2040_cov_9.911933_pilon to pilon.fasta [pilon] Writing NODE_408_length_2039_cov_25.826382:1-2039 changes to pilon.changes [pilon] Writing updated NODE_408_length_2039_cov_25.826382_pilon to pilon.fasta [pilon] Writing NODE_409_length_2037_cov_13.287056:1-2037 changes to pilon.changes [pilon] Writing updated NODE_409_length_2037_cov_13.287056_pilon to pilon.fasta [pilon] Writing NODE_410_length_2034_cov_2.726085:1-2034 changes to pilon.changes [pilon] Writing updated NODE_410_length_2034_cov_2.726085_pilon to pilon.fasta [pilon] Writing NODE_411_length_2032_cov_12.623757:1-2032 changes to pilon.changes [pilon] Writing updated NODE_411_length_2032_cov_12.623757_pilon to pilon.fasta [pilon] Writing NODE_412_length_2029_cov_27.388889:1-2029 changes to pilon.changes [pilon] Writing updated NODE_412_length_2029_cov_27.388889_pilon to pilon.fasta [pilon] Writing NODE_413_length_2029_cov_18.002621:1-2029 changes to pilon.changes [pilon] Writing updated NODE_413_length_2029_cov_18.002621_pilon to pilon.fasta [pilon] Writing NODE_414_length_2027_cov_35.351522:1-2027 changes to pilon.changes [pilon] Writing updated NODE_414_length_2027_cov_35.351522_pilon to pilon.fasta [pilon] Writing NODE_415_length_2025_cov_2.190651:1-2025 changes to pilon.changes [pilon] Writing updated NODE_415_length_2025_cov_2.190651_pilon to pilon.fasta [pilon] Writing NODE_416_length_2021_cov_18.702632:1-2021 changes to pilon.changes [pilon] Writing updated NODE_416_length_2021_cov_18.702632_pilon to pilon.fasta [pilon] Writing NODE_417_length_2018_cov_13.830785:1-2018 changes to pilon.changes [pilon] Writing updated NODE_417_length_2018_cov_13.830785_pilon to pilon.fasta [pilon] Writing NODE_418_length_2017_cov_18.152954:1-2017 changes to pilon.changes [pilon] Writing updated NODE_418_length_2017_cov_18.152954_pilon to pilon.fasta [pilon] Writing NODE_419_length_2016_cov_21.865435:1-2016 changes to pilon.changes [pilon] Writing updated NODE_419_length_2016_cov_21.865435_pilon to pilon.fasta [pilon] Writing NODE_420_length_2011_cov_24.347090:1-2011 changes to pilon.changes [pilon] Writing updated NODE_420_length_2011_cov_24.347090_pilon to pilon.fasta [pilon] Writing NODE_421_length_2010_cov_1.926416:1-2010 changes to pilon.changes [pilon] Writing updated NODE_421_length_2010_cov_1.926416_pilon to pilon.fasta [pilon] Writing NODE_422_length_2008_cov_14.489666:1-2008 changes to pilon.changes [pilon] Writing updated NODE_422_length_2008_cov_14.489666_pilon to pilon.fasta [pilon] Writing NODE_423_length_2004_cov_12.635157:1-2004 changes to pilon.changes [pilon] Writing updated NODE_423_length_2004_cov_12.635157_pilon to pilon.fasta [pilon] Writing NODE_424_length_2004_cov_2.726500:1-2004 changes to pilon.changes [pilon] Writing updated NODE_424_length_2004_cov_2.726500_pilon to pilon.fasta [pilon] Writing NODE_425_length_2003_cov_18.702976:1-2003 changes to pilon.changes [pilon] Writing updated NODE_425_length_2003_cov_18.702976_pilon to pilon.fasta [pilon] Writing NODE_426_length_1999_cov_30.881789:1-1999 changes to pilon.changes [pilon] Writing updated NODE_426_length_1999_cov_30.881789_pilon to pilon.fasta [pilon] Writing NODE_427_length_1996_cov_25.110400:1-1996 changes to pilon.changes [pilon] Writing updated NODE_427_length_1996_cov_25.110400_pilon to pilon.fasta [pilon] Writing NODE_428_length_1996_cov_18.405867:1-1996 changes to pilon.changes [pilon] Writing updated NODE_428_length_1996_cov_18.405867_pilon to pilon.fasta [pilon] Writing NODE_429_length_1995_cov_20.640342:1-1995 changes to pilon.changes [pilon] Writing updated NODE_429_length_1995_cov_20.640342_pilon to pilon.fasta [pilon] Writing NODE_430_length_1995_cov_15.535752:1-1995 changes to pilon.changes [pilon] Writing updated NODE_430_length_1995_cov_15.535752_pilon to pilon.fasta [pilon] Writing NODE_431_length_1994_cov_15.738922:1-1994 changes to pilon.changes [pilon] Writing updated NODE_431_length_1994_cov_15.738922_pilon to pilon.fasta [pilon] Writing NODE_432_length_1994_cov_2.075280:1-1994 changes to pilon.changes [pilon] Writing updated NODE_432_length_1994_cov_2.075280_pilon to pilon.fasta [pilon] Writing NODE_433_length_1993_cov_1.446581:1-1993 changes to pilon.changes [pilon] Writing updated NODE_433_length_1993_cov_1.446581_pilon to pilon.fasta [pilon] Writing NODE_434_length_1991_cov_4.037968:1-1991 changes to pilon.changes [pilon] Writing updated NODE_434_length_1991_cov_4.037968_pilon to pilon.fasta [pilon] Writing NODE_435_length_1987_cov_18.294212:1-1987 changes to pilon.changes [pilon] Writing updated NODE_435_length_1987_cov_18.294212_pilon to pilon.fasta [pilon] Writing NODE_436_length_1986_cov_2.698660:1-1986 changes to pilon.changes [pilon] Writing updated NODE_436_length_1986_cov_2.698660_pilon to pilon.fasta [pilon] Writing NODE_437_length_1985_cov_3.260193:1-1985 changes to pilon.changes [pilon] Writing updated NODE_437_length_1985_cov_3.260193_pilon to pilon.fasta [pilon] Writing NODE_438_length_1984_cov_23.570585:1-1984 changes to pilon.changes [pilon] Writing updated NODE_438_length_1984_cov_23.570585_pilon to pilon.fasta [pilon] Writing NODE_439_length_1983_cov_3.356069:1-1983 changes to pilon.changes [pilon] Writing updated NODE_439_length_1983_cov_3.356069_pilon to pilon.fasta [pilon] Writing NODE_440_length_1979_cov_24.081270:1-1979 changes to pilon.changes [pilon] Writing updated NODE_440_length_1979_cov_24.081270_pilon to pilon.fasta [pilon] Writing NODE_441_length_1978_cov_17.020463:1-1978 changes to pilon.changes [pilon] Writing updated NODE_441_length_1978_cov_17.020463_pilon to pilon.fasta [pilon] Writing NODE_442_length_1977_cov_26.636853:1-1977 changes to pilon.changes [pilon] Writing updated NODE_442_length_1977_cov_26.636853_pilon to pilon.fasta [pilon] Writing NODE_443_length_1977_cov_26.233836:1-1977 changes to pilon.changes [pilon] Writing updated NODE_443_length_1977_cov_26.233836_pilon to pilon.fasta [pilon] Writing NODE_444_length_1976_cov_2.988679:1-1976 changes to pilon.changes [pilon] Writing updated NODE_444_length_1976_cov_2.988679_pilon to pilon.fasta [pilon] Writing NODE_445_length_1976_cov_1.833423:1-1976 changes to pilon.changes [pilon] Writing updated NODE_445_length_1976_cov_1.833423_pilon to pilon.fasta [pilon] Writing NODE_446_length_1974_cov_7.869941:1-1974 changes to pilon.changes [pilon] Writing updated NODE_446_length_1974_cov_7.869941_pilon to pilon.fasta [pilon] Writing NODE_447_length_1974_cov_1.789530:1-1974 changes to pilon.changes [pilon] Writing updated NODE_447_length_1974_cov_1.789530_pilon to pilon.fasta [pilon] Writing NODE_448_length_1974_cov_1.509984:1-1974 changes to pilon.changes [pilon] Writing updated NODE_448_length_1974_cov_1.509984_pilon to pilon.fasta [pilon] Writing NODE_449_length_1973_cov_21.169006:1-1973 changes to pilon.changes [pilon] Writing updated NODE_449_length_1973_cov_21.169006_pilon to pilon.fasta [pilon] Writing NODE_450_length_1972_cov_16.837385:1-1972 changes to pilon.changes [pilon] Writing updated NODE_450_length_1972_cov_16.837385_pilon to pilon.fasta [pilon] Writing NODE_451_length_1970_cov_10.633315:1-1970 changes to pilon.changes [pilon] Writing updated NODE_451_length_1970_cov_10.633315_pilon to pilon.fasta [pilon] Writing NODE_452_length_1969_cov_9.143398:1-1969 changes to pilon.changes [pilon] Writing updated NODE_452_length_1969_cov_9.143398_pilon to pilon.fasta [pilon] Writing NODE_453_length_1969_cov_2.490801:1-1969 changes to pilon.changes [pilon] Writing updated NODE_453_length_1969_cov_2.490801_pilon to pilon.fasta [pilon] Writing NODE_454_length_1968_cov_12.106659:1-1968 changes to pilon.changes [pilon] Writing updated NODE_454_length_1968_cov_12.106659_pilon to pilon.fasta [pilon] Writing NODE_455_length_1968_cov_4.048186:1-1968 changes to pilon.changes [pilon] Writing updated NODE_455_length_1968_cov_4.048186_pilon to pilon.fasta [pilon] Writing NODE_456_length_1967_cov_24.815818:1-1967 changes to pilon.changes [pilon] Writing updated NODE_456_length_1967_cov_24.815818_pilon to pilon.fasta [pilon] Writing NODE_457_length_1967_cov_3.331528:1-1967 changes to pilon.changes [pilon] Writing updated NODE_457_length_1967_cov_3.331528_pilon to pilon.fasta [pilon] Writing NODE_458_length_1966_cov_1.794038:1-1966 changes to pilon.changes [pilon] Writing updated NODE_458_length_1966_cov_1.794038_pilon to pilon.fasta [pilon] Writing NODE_459_length_1965_cov_13.133406:1-1965 changes to pilon.changes [pilon] Writing updated NODE_459_length_1965_cov_13.133406_pilon to pilon.fasta [pilon] Writing NODE_460_length_1965_cov_5.255965:1-1965 changes to pilon.changes [pilon] Writing updated NODE_460_length_1965_cov_5.255965_pilon to pilon.fasta [pilon] Writing NODE_461_length_1962_cov_25.190657:1-1962 changes to pilon.changes [pilon] Writing updated NODE_461_length_1962_cov_25.190657_pilon to pilon.fasta [pilon] Writing NODE_462_length_1962_cov_1.919609:1-1962 changes to pilon.changes [pilon] Writing updated NODE_462_length_1962_cov_1.919609_pilon to pilon.fasta [pilon] Writing NODE_463_length_1959_cov_2.647987:1-1959 changes to pilon.changes [pilon] Writing updated NODE_463_length_1959_cov_2.647987_pilon to pilon.fasta [pilon] Writing NODE_464_length_1954_cov_25.711402:1-1954 changes to pilon.changes [pilon] Writing updated NODE_464_length_1954_cov_25.711402_pilon to pilon.fasta [pilon] Writing NODE_465_length_1954_cov_2.886525:1-1954 changes to pilon.changes [pilon] Writing updated NODE_465_length_1954_cov_2.886525_pilon to pilon.fasta [pilon] Writing NODE_466_length_1954_cov_2.146754:1-1954 changes to pilon.changes [pilon] Writing updated NODE_466_length_1954_cov_2.146754_pilon to pilon.fasta [pilon] Writing NODE_467_length_1951_cov_17.010929:1-1951 changes to pilon.changes [pilon] Writing updated NODE_467_length_1951_cov_17.010929_pilon to pilon.fasta [pilon] Writing NODE_468_length_1949_cov_20.439825:1-1949 changes to pilon.changes [pilon] Writing updated NODE_468_length_1949_cov_20.439825_pilon to pilon.fasta [pilon] Writing NODE_469_length_1948_cov_2.909141:1-1948 changes to pilon.changes [pilon] Writing updated NODE_469_length_1948_cov_2.909141_pilon to pilon.fasta [pilon] Writing NODE_470_length_1948_cov_1.886700:1-1948 changes to pilon.changes [pilon] Writing updated NODE_470_length_1948_cov_1.886700_pilon to pilon.fasta [pilon] Writing NODE_471_length_1947_cov_14.664294:1-1947 changes to pilon.changes [pilon] Writing updated NODE_471_length_1947_cov_14.664294_pilon to pilon.fasta [pilon] Writing NODE_472_length_1947_cov_1.131982:1-1947 changes to pilon.changes [pilon] Writing updated NODE_472_length_1947_cov_1.131982_pilon to pilon.fasta [pilon] Writing NODE_473_length_1946_cov_23.375342:1-1946 changes to pilon.changes [pilon] Writing updated NODE_473_length_1946_cov_23.375342_pilon to pilon.fasta [pilon] Writing NODE_474_length_1943_cov_7.843578:1-1943 changes to pilon.changes [pilon] Writing updated NODE_474_length_1943_cov_7.843578_pilon to pilon.fasta [pilon] Writing NODE_475_length_1941_cov_23.794505:1-1941 changes to pilon.changes [pilon] Writing updated NODE_475_length_1941_cov_23.794505_pilon to pilon.fasta [pilon] Writing NODE_476_length_1941_cov_22.507692:1-1941 changes to pilon.changes [pilon] Writing updated NODE_476_length_1941_cov_22.507692_pilon to pilon.fasta [pilon] Writing NODE_477_length_1939_cov_17.620462:1-1939 changes to pilon.changes [pilon] Writing updated NODE_477_length_1939_cov_17.620462_pilon to pilon.fasta [pilon] Writing NODE_478_length_1936_cov_34.634160:1-1936 changes to pilon.changes [pilon] Writing updated NODE_478_length_1936_cov_34.634160_pilon to pilon.fasta [pilon] Writing NODE_479_length_1931_cov_17.665193:1-1931 changes to pilon.changes [pilon] Writing updated NODE_479_length_1931_cov_17.665193_pilon to pilon.fasta [pilon] Writing NODE_480_length_1930_cov_29.556108:1-1930 changes to pilon.changes [pilon] Writing updated NODE_480_length_1930_cov_29.556108_pilon to pilon.fasta [pilon] Writing NODE_481_length_1929_cov_3.586836:1-1929 changes to pilon.changes [pilon] Writing updated NODE_481_length_1929_cov_3.586836_pilon to pilon.fasta [pilon] Writing NODE_482_length_1926_cov_39.070360:1-1926 changes to pilon.changes [pilon] Writing updated NODE_482_length_1926_cov_39.070360_pilon to pilon.fasta [pilon] Writing NODE_483_length_1926_cov_16.606094:1-1926 changes to pilon.changes [pilon] Writing updated NODE_483_length_1926_cov_16.606094_pilon to pilon.fasta [pilon] Writing NODE_484_length_1925_cov_23.029933:1-1925 changes to pilon.changes [pilon] Writing updated NODE_484_length_1925_cov_23.029933_pilon to pilon.fasta [pilon] Writing NODE_485_length_1924_cov_3.612313:1-1924 changes to pilon.changes [pilon] Writing updated NODE_485_length_1924_cov_3.612313_pilon to pilon.fasta [pilon] Writing NODE_486_length_1923_cov_24.327414:1-1923 changes to pilon.changes [pilon] Writing updated NODE_486_length_1923_cov_24.327414_pilon to pilon.fasta [pilon] Writing NODE_487_length_1923_cov_5.966704:1-1923 changes to pilon.changes [pilon] Writing updated NODE_487_length_1923_cov_5.966704_pilon to pilon.fasta [pilon] Writing NODE_488_length_1919_cov_21.617353:1-1919 changes to pilon.changes [pilon] Writing updated NODE_488_length_1919_cov_21.617353_pilon to pilon.fasta [pilon] Writing NODE_489_length_1919_cov_2.720245:1-1919 changes to pilon.changes [pilon] Writing updated NODE_489_length_1919_cov_2.720245_pilon to pilon.fasta [pilon] Writing NODE_490_length_1917_cov_3.371938:1-1917 changes to pilon.changes [pilon] Writing updated NODE_490_length_1917_cov_3.371938_pilon to pilon.fasta [pilon] Writing NODE_491_length_1916_cov_29.046240:1-1916 changes to pilon.changes [pilon] Writing updated NODE_491_length_1916_cov_29.046240_pilon to pilon.fasta [pilon] Writing NODE_492_length_1916_cov_2.867409:1-1916 changes to pilon.changes [pilon] Writing updated NODE_492_length_1916_cov_2.867409_pilon to pilon.fasta [pilon] Writing NODE_493_length_1916_cov_2.577716:1-1916 changes to pilon.changes [pilon] Writing updated NODE_493_length_1916_cov_2.577716_pilon to pilon.fasta [pilon] Writing NODE_494_length_1914_cov_8.951478:1-1914 changes to pilon.changes [pilon] Writing updated NODE_494_length_1914_cov_8.951478_pilon to pilon.fasta [pilon] Writing NODE_495_length_1913_cov_1.911830:1-1913 changes to pilon.changes [pilon] Writing updated NODE_495_length_1913_cov_1.911830_pilon to pilon.fasta [pilon] Writing NODE_496_length_1912_cov_38.805137:1-1912 changes to pilon.changes [pilon] Writing updated NODE_496_length_1912_cov_38.805137_pilon to pilon.fasta [pilon] Writing NODE_497_length_1912_cov_21.874930:1-1912 changes to pilon.changes [pilon] Writing updated NODE_497_length_1912_cov_21.874930_pilon to pilon.fasta [pilon] Writing NODE_498_length_1912_cov_8.212172:1-1912 changes to pilon.changes [pilon] Writing updated NODE_498_length_1912_cov_8.212172_pilon to pilon.fasta [pilon] Writing NODE_499_length_1911_cov_24.149721:1-1911 changes to pilon.changes [pilon] Writing updated NODE_499_length_1911_cov_24.149721_pilon to pilon.fasta [pilon] Writing NODE_500_length_1911_cov_20.091620:1-1911 changes to pilon.changes [pilon] Writing updated NODE_500_length_1911_cov_20.091620_pilon to pilon.fasta [pilon] Writing NODE_501_length_1911_cov_19.365922:1-1911 changes to pilon.changes [pilon] Writing updated NODE_501_length_1911_cov_19.365922_pilon to pilon.fasta [pilon] Writing NODE_502_length_1911_cov_17.250838:1-1911 changes to pilon.changes [pilon] Writing updated NODE_502_length_1911_cov_17.250838_pilon to pilon.fasta [pilon] Writing NODE_503_length_1911_cov_3.513408:1-1911 changes to pilon.changes [pilon] Writing updated NODE_503_length_1911_cov_3.513408_pilon to pilon.fasta [pilon] Writing NODE_504_length_1909_cov_29.802013:1-1909 changes to pilon.changes [pilon] Writing updated NODE_504_length_1909_cov_29.802013_pilon to pilon.fasta [pilon] Writing NODE_505_length_1909_cov_4.178971:1-1909 changes to pilon.changes [pilon] Writing updated NODE_505_length_1909_cov_4.178971_pilon to pilon.fasta [pilon] Writing NODE_506_length_1909_cov_2.560403:1-1909 changes to pilon.changes [pilon] Writing updated NODE_506_length_1909_cov_2.560403_pilon to pilon.fasta [pilon] Writing NODE_507_length_1908_cov_24.574706:1-1908 changes to pilon.changes [pilon] Writing updated NODE_507_length_1908_cov_24.574706_pilon to pilon.fasta [pilon] Writing NODE_508_length_1908_cov_3.453833:1-1908 changes to pilon.changes [pilon] Writing updated NODE_508_length_1908_cov_3.453833_pilon to pilon.fasta [pilon] Writing NODE_509_length_1908_cov_1.691662:1-1908 changes to pilon.changes [pilon] Writing updated NODE_509_length_1908_cov_1.691662_pilon to pilon.fasta [pilon] Writing NODE_510_length_1907_cov_2.678611:1-1907 changes to pilon.changes [pilon] Writing updated NODE_510_length_1907_cov_2.678611_pilon to pilon.fasta [pilon] Writing NODE_511_length_1906_cov_10.235294:1-1906 changes to pilon.changes [pilon] Writing updated NODE_511_length_1906_cov_10.235294_pilon to pilon.fasta [pilon] Writing NODE_512_length_1904_cov_19.890073:1-1904 changes to pilon.changes [pilon] Writing updated NODE_512_length_1904_cov_19.890073_pilon to pilon.fasta [pilon] Writing NODE_513_length_1904_cov_1.782389:1-1904 changes to pilon.changes [pilon] Writing updated NODE_513_length_1904_cov_1.782389_pilon to pilon.fasta [pilon] Writing NODE_514_length_1903_cov_16.508418:1-1903 changes to pilon.changes [pilon] Writing updated NODE_514_length_1903_cov_16.508418_pilon to pilon.fasta [pilon] Writing NODE_515_length_1903_cov_1.273288:1-1903 changes to pilon.changes [pilon] Writing updated NODE_515_length_1903_cov_1.273288_pilon to pilon.fasta [pilon] Writing NODE_516_length_1902_cov_17.918024:1-1902 changes to pilon.changes [pilon] Writing updated NODE_516_length_1902_cov_17.918024_pilon to pilon.fasta [pilon] Writing NODE_517_length_1902_cov_3.553060:1-1902 changes to pilon.changes [pilon] Writing updated NODE_517_length_1902_cov_3.553060_pilon to pilon.fasta [pilon] Writing NODE_518_length_1901_cov_29.393258:1-1901 changes to pilon.changes [pilon] Writing updated NODE_518_length_1901_cov_29.393258_pilon to pilon.fasta [pilon] Writing NODE_519_length_1901_cov_10.502247:1-1901 changes to pilon.changes [pilon] Writing updated NODE_519_length_1901_cov_10.502247_pilon to pilon.fasta [pilon] Writing NODE_520_length_1898_cov_15.275183:1-1898 changes to pilon.changes [pilon] Writing updated NODE_520_length_1898_cov_15.275183_pilon to pilon.fasta [pilon] Writing NODE_521_length_1896_cov_11.465352:1-1896 changes to pilon.changes [pilon] Writing updated NODE_521_length_1896_cov_11.465352_pilon to pilon.fasta [pilon] Writing NODE_522_length_1895_cov_14.264938:1-1895 changes to pilon.changes [pilon] Writing updated NODE_522_length_1895_cov_14.264938_pilon to pilon.fasta [pilon] Writing NODE_523_length_1894_cov_24.354766:1-1894 changes to pilon.changes [pilon] Writing updated NODE_523_length_1894_cov_24.354766_pilon to pilon.fasta [pilon] Writing NODE_524_length_1894_cov_2.232375:1-1894 changes to pilon.changes [pilon] Writing updated NODE_524_length_1894_cov_2.232375_pilon to pilon.fasta [pilon] Writing NODE_525_length_1892_cov_8.766234:1-1892 changes to pilon.changes [pilon] Writing updated NODE_525_length_1892_cov_8.766234_pilon to pilon.fasta [pilon] Writing NODE_526_length_1891_cov_15.740678:1-1891 changes to pilon.changes [pilon] Writing updated NODE_526_length_1891_cov_15.740678_pilon to pilon.fasta [pilon] Writing NODE_527_length_1889_cov_21.788462:1-1889 changes to pilon.changes [pilon] Writing updated NODE_527_length_1889_cov_21.788462_pilon to pilon.fasta [pilon] Writing NODE_528_length_1888_cov_2.374080:1-1888 changes to pilon.changes [pilon] Writing updated NODE_528_length_1888_cov_2.374080_pilon to pilon.fasta [pilon] Writing NODE_529_length_1882_cov_12.812606:1-1882 changes to pilon.changes [pilon] Writing updated NODE_529_length_1882_cov_12.812606_pilon to pilon.fasta [pilon] Writing NODE_530_length_1881_cov_27.670455:1-1881 changes to pilon.changes [pilon] Writing updated NODE_530_length_1881_cov_27.670455_pilon to pilon.fasta [pilon] Writing NODE_531_length_1880_cov_28.404207:1-1880 changes to pilon.changes [pilon] Writing updated NODE_531_length_1880_cov_28.404207_pilon to pilon.fasta [pilon] Writing NODE_532_length_1878_cov_3.451907:1-1878 changes to pilon.changes [pilon] Writing updated NODE_532_length_1878_cov_3.451907_pilon to pilon.fasta [pilon] Writing NODE_533_length_1877_cov_19.484624:1-1877 changes to pilon.changes [pilon] Writing updated NODE_533_length_1877_cov_19.484624_pilon to pilon.fasta [pilon] Writing NODE_534_length_1876_cov_16.720228:1-1876 changes to pilon.changes [pilon] Writing updated NODE_534_length_1876_cov_16.720228_pilon to pilon.fasta [pilon] Writing NODE_535_length_1875_cov_18.848917:1-1875 changes to pilon.changes [pilon] Writing updated NODE_535_length_1875_cov_18.848917_pilon to pilon.fasta [pilon] Writing NODE_536_length_1875_cov_16.790194:1-1875 changes to pilon.changes [pilon] Writing updated NODE_536_length_1875_cov_16.790194_pilon to pilon.fasta [pilon] Writing NODE_537_length_1873_cov_2.656393:1-1873 changes to pilon.changes [pilon] Writing updated NODE_537_length_1873_cov_2.656393_pilon to pilon.fasta [pilon] Writing NODE_538_length_1871_cov_12.072000:1-1871 changes to pilon.changes [pilon] Writing updated NODE_538_length_1871_cov_12.072000_pilon to pilon.fasta [pilon] Writing NODE_539_length_1867_cov_5.018328:1-1867 changes to pilon.changes [pilon] Writing updated NODE_539_length_1867_cov_5.018328_pilon to pilon.fasta [pilon] Writing NODE_540_length_1867_cov_3.034364:1-1867 changes to pilon.changes [pilon] Writing updated NODE_540_length_1867_cov_3.034364_pilon to pilon.fasta [pilon] Writing NODE_541_length_1865_cov_30.339450:1-1865 changes to pilon.changes [pilon] Writing updated NODE_541_length_1865_cov_30.339450_pilon to pilon.fasta [pilon] Writing NODE_542_length_1865_cov_2.801032:1-1865 changes to pilon.changes [pilon] Writing updated NODE_542_length_1865_cov_2.801032_pilon to pilon.fasta [pilon] Writing NODE_543_length_1864_cov_15.536431:1-1864 changes to pilon.changes [pilon] Writing updated NODE_543_length_1864_cov_15.536431_pilon to pilon.fasta [pilon] Writing NODE_544_length_1864_cov_14.820425:1-1864 changes to pilon.changes [pilon] Writing updated NODE_544_length_1864_cov_14.820425_pilon to pilon.fasta [pilon] Writing NODE_545_length_1863_cov_22.639495:1-1863 changes to pilon.changes [pilon] Writing updated NODE_545_length_1863_cov_22.639495_pilon to pilon.fasta [pilon] Writing NODE_546_length_1861_cov_5.450575:1-1861 changes to pilon.changes [pilon] Writing updated NODE_546_length_1861_cov_5.450575_pilon to pilon.fasta [pilon] Writing NODE_547_length_1859_cov_12.736479:1-1859 changes to pilon.changes [pilon] Writing updated NODE_547_length_1859_cov_12.736479_pilon to pilon.fasta [pilon] Writing NODE_548_length_1858_cov_12.617156:1-1858 changes to pilon.changes [pilon] Writing updated NODE_548_length_1858_cov_12.617156_pilon to pilon.fasta [pilon] Writing NODE_549_length_1858_cov_12.271157:1-1858 changes to pilon.changes [pilon] Writing updated NODE_549_length_1858_cov_12.271157_pilon to pilon.fasta [pilon] Writing NODE_550_length_1858_cov_2.918250:1-1858 changes to pilon.changes [pilon] Writing updated NODE_550_length_1858_cov_2.918250_pilon to pilon.fasta [pilon] Writing NODE_551_length_1857_cov_11.892281:1-1857 changes to pilon.changes [pilon] Writing updated NODE_551_length_1857_cov_11.892281_pilon to pilon.fasta [pilon] Writing NODE_552_length_1857_cov_9.271313:1-1857 changes to pilon.changes [pilon] Writing updated NODE_552_length_1857_cov_9.271313_pilon to pilon.fasta [pilon] Writing NODE_553_length_1856_cov_15.911239:1-1856 changes to pilon.changes [pilon] Writing updated NODE_553_length_1856_cov_15.911239_pilon to pilon.fasta [pilon] Writing NODE_554_length_1856_cov_13.341210:1-1856 changes to pilon.changes [pilon] Writing updated NODE_554_length_1856_cov_13.341210_pilon to pilon.fasta [pilon] Writing NODE_555_length_1855_cov_15.597463:1-1855 changes to pilon.changes [pilon] Writing updated NODE_555_length_1855_cov_15.597463_pilon to pilon.fasta [pilon] Writing NODE_556_length_1851_cov_21.448555:1-1851 changes to pilon.changes [pilon] Writing updated NODE_556_length_1851_cov_21.448555_pilon to pilon.fasta [pilon] Writing NODE_557_length_1850_cov_19.337189:1-1850 changes to pilon.changes [pilon] Writing updated NODE_557_length_1850_cov_19.337189_pilon to pilon.fasta [pilon] Writing NODE_558_length_1849_cov_18.937500:1-1849 changes to pilon.changes [pilon] Writing updated NODE_558_length_1849_cov_18.937500_pilon to pilon.fasta [pilon] Writing NODE_559_length_1848_cov_16.565142:1-1848 changes to pilon.changes [pilon] Writing updated NODE_559_length_1848_cov_16.565142_pilon to pilon.fasta [pilon] Writing NODE_560_length_1847_cov_20.950174:1-1847 changes to pilon.changes [pilon] Writing updated NODE_560_length_1847_cov_20.950174_pilon to pilon.fasta [pilon] Writing NODE_561_length_1846_cov_18.302609:1-1846 changes to pilon.changes [pilon] Writing updated NODE_561_length_1846_cov_18.302609_pilon to pilon.fasta [pilon] Writing NODE_562_length_1846_cov_3.784928:1-1846 changes to pilon.changes [pilon] Writing updated NODE_562_length_1846_cov_3.784928_pilon to pilon.fasta [pilon] Writing NODE_563_length_1846_cov_1.961159:1-1846 changes to pilon.changes [pilon] Writing updated NODE_563_length_1846_cov_1.961159_pilon to pilon.fasta [pilon] Writing NODE_564_length_1845_cov_3.053364:1-1845 changes to pilon.changes [pilon] Writing updated NODE_564_length_1845_cov_3.053364_pilon to pilon.fasta [pilon] Writing NODE_565_length_1845_cov_2.734339:1-1845 changes to pilon.changes [pilon] Writing updated NODE_565_length_1845_cov_2.734339_pilon to pilon.fasta [pilon] Writing NODE_566_length_1841_cov_3.172093:1-1841 changes to pilon.changes [pilon] Writing updated NODE_566_length_1841_cov_3.172093_pilon to pilon.fasta [pilon] Writing NODE_567_length_1838_cov_13.386139:1-1838 changes to pilon.changes [pilon] Writing updated NODE_567_length_1838_cov_13.386139_pilon to pilon.fasta [pilon] Writing NODE_568_length_1837_cov_18.043124:1-1837 changes to pilon.changes [pilon] Writing updated NODE_568_length_1837_cov_18.043124_pilon to pilon.fasta [pilon] Writing NODE_569_length_1836_cov_18.441399:1-1836 changes to pilon.changes [pilon] Writing updated NODE_569_length_1836_cov_18.441399_pilon to pilon.fasta [pilon] Writing NODE_570_length_1834_cov_21.723876:1-1834 changes to pilon.changes [pilon] Writing updated NODE_570_length_1834_cov_21.723876_pilon to pilon.fasta [pilon] Writing NODE_571_length_1834_cov_17.013427:1-1834 changes to pilon.changes [pilon] Writing updated NODE_571_length_1834_cov_17.013427_pilon to pilon.fasta [pilon] Writing NODE_572_length_1834_cov_2.455925:1-1834 changes to pilon.changes [pilon] Writing updated NODE_572_length_1834_cov_2.455925_pilon to pilon.fasta [pilon] Writing NODE_573_length_1834_cov_1.593695:1-1834 changes to pilon.changes [pilon] Writing updated NODE_573_length_1834_cov_1.593695_pilon to pilon.fasta [pilon] Writing NODE_574_length_1833_cov_3.242991:1-1833 changes to pilon.changes [pilon] Writing updated NODE_574_length_1833_cov_3.242991_pilon to pilon.fasta [pilon] Writing NODE_575_length_1832_cov_1.923437:1-1832 changes to pilon.changes [pilon] Writing updated NODE_575_length_1832_cov_1.923437_pilon to pilon.fasta [pilon] Writing NODE_576_length_1830_cov_27.787595:1-1830 changes to pilon.changes [pilon] Writing updated NODE_576_length_1830_cov_27.787595_pilon to pilon.fasta [pilon] Writing NODE_577_length_1829_cov_22.427986:1-1829 changes to pilon.changes [pilon] Writing updated NODE_577_length_1829_cov_22.427986_pilon to pilon.fasta [pilon] Writing NODE_578_length_1829_cov_2.971311:1-1829 changes to pilon.changes [pilon] Writing updated NODE_578_length_1829_cov_2.971311_pilon to pilon.fasta [pilon] Writing NODE_579_length_1829_cov_2.723653:1-1829 changes to pilon.changes [pilon] Writing updated NODE_579_length_1829_cov_2.723653_pilon to pilon.fasta [pilon] Writing NODE_580_length_1828_cov_36.054482:1-1828 changes to pilon.changes [pilon] Writing updated NODE_580_length_1828_cov_36.054482_pilon to pilon.fasta [pilon] Writing NODE_581_length_1828_cov_22.224370:1-1828 changes to pilon.changes [pilon] Writing updated NODE_581_length_1828_cov_22.224370_pilon to pilon.fasta [pilon] Writing NODE_582_length_1828_cov_13.943175:1-1828 changes to pilon.changes [pilon] Writing updated NODE_582_length_1828_cov_13.943175_pilon to pilon.fasta [pilon] Writing NODE_583_length_1826_cov_14.873314:1-1826 changes to pilon.changes [pilon] Writing updated NODE_583_length_1826_cov_14.873314_pilon to pilon.fasta [pilon] Writing NODE_584_length_1825_cov_12.698357:1-1825 changes to pilon.changes [pilon] Writing updated NODE_584_length_1825_cov_12.698357_pilon to pilon.fasta [pilon] Writing NODE_585_length_1824_cov_36.702290:1-1824 changes to pilon.changes [pilon] Writing updated NODE_585_length_1824_cov_36.702290_pilon to pilon.fasta [pilon] Writing NODE_586_length_1824_cov_1.574868:1-1824 changes to pilon.changes [pilon] Writing updated NODE_586_length_1824_cov_1.574868_pilon to pilon.fasta [pilon] Writing NODE_587_length_1823_cov_1.106933:1-1823 changes to pilon.changes [pilon] Writing updated NODE_587_length_1823_cov_1.106933_pilon to pilon.fasta [pilon] Writing NODE_588_length_1822_cov_2.723692:1-1822 changes to pilon.changes [pilon] Writing updated NODE_588_length_1822_cov_2.723692_pilon to pilon.fasta [pilon] Writing NODE_589_length_1822_cov_1.279248:1-1822 changes to pilon.changes [pilon] Writing updated NODE_589_length_1822_cov_1.279248_pilon to pilon.fasta [pilon] Writing NODE_590_length_1821_cov_3.430588:1-1821 changes to pilon.changes [pilon] Writing updated NODE_590_length_1821_cov_3.430588_pilon to pilon.fasta [pilon] Writing NODE_591_length_1820_cov_5.423779:1-1820 changes to pilon.changes [pilon] Writing updated NODE_591_length_1820_cov_5.423779_pilon to pilon.fasta [pilon] Writing NODE_592_length_1820_cov_2.605062:1-1820 changes to pilon.changes [pilon] Writing updated NODE_592_length_1820_cov_2.605062_pilon to pilon.fasta [pilon] Writing NODE_593_length_1819_cov_5.106007:1-1819 changes to pilon.changes [pilon] Writing updated NODE_593_length_1819_cov_5.106007_pilon to pilon.fasta [pilon] Writing NODE_594_length_1819_cov_1.742049:1-1819 changes to pilon.changes [pilon] Writing updated NODE_594_length_1819_cov_1.742049_pilon to pilon.fasta [pilon] Writing NODE_595_length_1816_cov_39.231268:1-1816 changes to pilon.changes [pilon] Writing updated NODE_595_length_1816_cov_39.231268_pilon to pilon.fasta [pilon] Writing NODE_596_length_1814_cov_11.843473:1-1814 changes to pilon.changes [pilon] Writing updated NODE_596_length_1814_cov_11.843473_pilon to pilon.fasta [pilon] Writing NODE_597_length_1813_cov_15.415485:1-1813 changes to pilon.changes [pilon] Writing updated NODE_597_length_1813_cov_15.415485_pilon to pilon.fasta [pilon] Writing NODE_598_length_1812_cov_2.626257:1-1812 changes to pilon.changes [pilon] Writing updated NODE_598_length_1812_cov_2.626257_pilon to pilon.fasta [pilon] Writing NODE_599_length_1811_cov_27.150296:1-1811 changes to pilon.changes [pilon] Writing updated NODE_599_length_1811_cov_27.150296_pilon to pilon.fasta [pilon] Writing NODE_600_length_1811_cov_14.694083:1-1811 changes to pilon.changes [pilon] Writing updated NODE_600_length_1811_cov_14.694083_pilon to pilon.fasta [pilon] Writing NODE_601_length_1810_cov_2.047957:1-1810 changes to pilon.changes [pilon] Writing updated NODE_601_length_1810_cov_2.047957_pilon to pilon.fasta [pilon] Writing NODE_602_length_1808_cov_10.705394:1-1808 changes to pilon.changes [pilon] Writing updated NODE_602_length_1808_cov_10.705394_pilon to pilon.fasta [pilon] Writing NODE_603_length_1807_cov_2.157177:1-1807 changes to pilon.changes [pilon] Writing updated NODE_603_length_1807_cov_2.157177_pilon to pilon.fasta [pilon] Writing NODE_604_length_1806_cov_35.874777:1-1806 changes to pilon.changes [pilon] Writing updated NODE_604_length_1806_cov_35.874777_pilon to pilon.fasta [pilon] Writing NODE_605_length_1806_cov_2.604748:1-1806 changes to pilon.changes [pilon] Writing updated NODE_605_length_1806_cov_2.604748_pilon to pilon.fasta [pilon] Writing NODE_606_length_1802_cov_22.356336:1-1802 changes to pilon.changes [pilon] Writing updated NODE_606_length_1802_cov_22.356336_pilon to pilon.fasta [pilon] Writing NODE_607_length_1802_cov_15.437835:1-1802 changes to pilon.changes [pilon] Writing updated NODE_607_length_1802_cov_15.437835_pilon to pilon.fasta [pilon] Writing NODE_608_length_1798_cov_2.979726:1-1798 changes to pilon.changes [pilon] Writing updated NODE_608_length_1798_cov_2.979726_pilon to pilon.fasta [pilon] Writing NODE_609_length_1798_cov_1.286225:1-1798 changes to pilon.changes [pilon] Writing updated NODE_609_length_1798_cov_1.286225_pilon to pilon.fasta [pilon] Writing NODE_610_length_1793_cov_12.355861:1-1793 changes to pilon.changes [pilon] Writing updated NODE_610_length_1793_cov_12.355861_pilon to pilon.fasta [pilon] Writing NODE_611_length_1793_cov_1.612440:1-1793 changes to pilon.changes [pilon] Writing updated NODE_611_length_1793_cov_1.612440_pilon to pilon.fasta [pilon] Writing NODE_612_length_1791_cov_25.680240:1-1791 changes to pilon.changes [pilon] Writing updated NODE_612_length_1791_cov_25.680240_pilon to pilon.fasta [pilon] Writing NODE_613_length_1790_cov_3.245656:1-1790 changes to pilon.changes [pilon] Writing updated NODE_613_length_1790_cov_3.245656_pilon to pilon.fasta [pilon] Writing NODE_614_length_1788_cov_27.293341:1-1788 changes to pilon.changes [pilon] Writing updated NODE_614_length_1788_cov_27.293341_pilon to pilon.fasta [pilon] Writing NODE_615_length_1788_cov_16.359928:1-1788 changes to pilon.changes [pilon] Writing updated NODE_615_length_1788_cov_16.359928_pilon to pilon.fasta [pilon] Writing NODE_616_length_1788_cov_12.145171:1-1788 changes to pilon.changes [pilon] Writing updated NODE_616_length_1788_cov_12.145171_pilon to pilon.fasta [pilon] Writing NODE_617_length_1787_cov_22.389556:1-1787 changes to pilon.changes [pilon] Writing updated NODE_617_length_1787_cov_22.389556_pilon to pilon.fasta [pilon] Writing NODE_618_length_1787_cov_19.458583:1-1787 changes to pilon.changes [pilon] Writing updated NODE_618_length_1787_cov_19.458583_pilon to pilon.fasta [pilon] Writing NODE_619_length_1783_cov_12.300241:1-1783 changes to pilon.changes [pilon] Writing updated NODE_619_length_1783_cov_12.300241_pilon to pilon.fasta [pilon] Writing NODE_620_length_1782_cov_23.656231:1-1782 changes to pilon.changes [pilon] Writing updated NODE_620_length_1782_cov_23.656231_pilon to pilon.fasta [pilon] Writing NODE_621_length_1781_cov_24.528313:1-1781 changes to pilon.changes [pilon] Writing updated NODE_621_length_1781_cov_24.528313_pilon to pilon.fasta [pilon] Writing NODE_622_length_1781_cov_17.081325:1-1781 changes to pilon.changes [pilon] Writing updated NODE_622_length_1781_cov_17.081325_pilon to pilon.fasta [pilon] Writing NODE_623_length_1781_cov_2.064458:1-1781 changes to pilon.changes [pilon] Writing updated NODE_623_length_1781_cov_2.064458_pilon to pilon.fasta [pilon] Writing NODE_624_length_1778_cov_11.070006:1-1778 changes to pilon.changes [pilon] Writing updated NODE_624_length_1778_cov_11.070006_pilon to pilon.fasta [pilon] Writing NODE_625_length_1777_cov_26.458333:1-1777 changes to pilon.changes [pilon] Writing updated NODE_625_length_1777_cov_26.458333_pilon to pilon.fasta [pilon] Writing NODE_626_length_1777_cov_20.739734:1-1777 changes to pilon.changes [pilon] Writing updated NODE_626_length_1777_cov_20.739734_pilon to pilon.fasta [pilon] Writing NODE_627_length_1777_cov_2.212560:1-1777 changes to pilon.changes [pilon] Writing updated NODE_627_length_1777_cov_2.212560_pilon to pilon.fasta [pilon] Writing NODE_628_length_1773_cov_4.040557:1-1773 changes to pilon.changes [pilon] Writing updated NODE_628_length_1773_cov_4.040557_pilon to pilon.fasta [pilon] Writing NODE_629_length_1772_cov_19.472441:1-1772 changes to pilon.changes [pilon] Writing updated NODE_629_length_1772_cov_19.472441_pilon to pilon.fasta [pilon] Writing NODE_630_length_1771_cov_22.966061:1-1771 changes to pilon.changes [pilon] Writing updated NODE_630_length_1771_cov_22.966061_pilon to pilon.fasta [pilon] Writing NODE_631_length_1771_cov_2.429091:1-1771 changes to pilon.changes [pilon] Writing updated NODE_631_length_1771_cov_2.429091_pilon to pilon.fasta [pilon] Writing NODE_632_length_1770_cov_14.775622:1-1770 changes to pilon.changes [pilon] Writing updated NODE_632_length_1770_cov_14.775622_pilon to pilon.fasta [pilon] Writing NODE_633_length_1769_cov_16.250607:1-1769 changes to pilon.changes [pilon] Writing updated NODE_633_length_1769_cov_16.250607_pilon to pilon.fasta [pilon] Writing NODE_634_length_1769_cov_7.901699:1-1769 changes to pilon.changes [pilon] Writing updated NODE_634_length_1769_cov_7.901699_pilon to pilon.fasta [pilon] Writing NODE_635_length_1767_cov_13.838396:1-1767 changes to pilon.changes [pilon] Writing updated NODE_635_length_1767_cov_13.838396_pilon to pilon.fasta [pilon] Writing NODE_636_length_1765_cov_18.261557:1-1765 changes to pilon.changes [pilon] Writing updated NODE_636_length_1765_cov_18.261557_pilon to pilon.fasta [pilon] Writing NODE_637_length_1765_cov_18.224453:1-1765 changes to pilon.changes [pilon] Writing updated NODE_637_length_1765_cov_18.224453_pilon to pilon.fasta [pilon] Writing NODE_638_length_1765_cov_4.381995:1-1765 changes to pilon.changes [pilon] Writing updated NODE_638_length_1765_cov_4.381995_pilon to pilon.fasta [pilon] Writing NODE_639_length_1764_cov_16.656726:1-1764 changes to pilon.changes [pilon] Writing updated NODE_639_length_1764_cov_16.656726_pilon to pilon.fasta [pilon] Writing NODE_640_length_1762_cov_1.925046:1-1762 changes to pilon.changes [pilon] Writing updated NODE_640_length_1762_cov_1.925046_pilon to pilon.fasta [pilon] Writing NODE_641_length_1760_cov_4.115314:1-1760 changes to pilon.changes [pilon] Writing updated NODE_641_length_1760_cov_4.115314_pilon to pilon.fasta [pilon] Writing NODE_642_length_1758_cov_12.075748:1-1758 changes to pilon.changes [pilon] Writing updated NODE_642_length_1758_cov_12.075748_pilon to pilon.fasta [pilon] Writing NODE_643_length_1757_cov_19.544621:1-1757 changes to pilon.changes [pilon] Writing updated NODE_643_length_1757_cov_19.544621_pilon to pilon.fasta [pilon] Writing NODE_644_length_1754_cov_1.664421:1-1754 changes to pilon.changes [pilon] Writing updated NODE_644_length_1754_cov_1.664421_pilon to pilon.fasta [pilon] Writing NODE_645_length_1752_cov_20.051502:1-1752 changes to pilon.changes [pilon] Writing updated NODE_645_length_1752_cov_20.051502_pilon to pilon.fasta [pilon] Writing NODE_646_length_1752_cov_18.807480:1-1752 changes to pilon.changes [pilon] Writing updated NODE_646_length_1752_cov_18.807480_pilon to pilon.fasta [pilon] Writing NODE_647_length_1752_cov_10.493562:1-1752 changes to pilon.changes [pilon] Writing updated NODE_647_length_1752_cov_10.493562_pilon to pilon.fasta [pilon] Writing NODE_648_length_1749_cov_31.025799:1-1749 changes to pilon.changes [pilon] Writing updated NODE_648_length_1749_cov_31.025799_pilon to pilon.fasta [pilon] Writing NODE_649_length_1749_cov_5.258600:1-1749 changes to pilon.changes [pilon] Writing updated NODE_649_length_1749_cov_5.258600_pilon to pilon.fasta [pilon] Writing NODE_650_length_1746_cov_11.975385:1-1746 changes to pilon.changes [pilon] Writing updated NODE_650_length_1746_cov_11.975385_pilon to pilon.fasta [pilon] Writing NODE_651_length_1745_cov_3.248153:1-1745 changes to pilon.changes [pilon] Writing updated NODE_651_length_1745_cov_3.248153_pilon to pilon.fasta [pilon] Writing NODE_652_length_1744_cov_24.895872:1-1744 changes to pilon.changes [pilon] Writing updated NODE_652_length_1744_cov_24.895872_pilon to pilon.fasta [pilon] Writing NODE_653_length_1743_cov_11.672010:1-1743 changes to pilon.changes [pilon] Writing updated NODE_653_length_1743_cov_11.672010_pilon to pilon.fasta [pilon] Writing NODE_654_length_1743_cov_1.513564:1-1743 changes to pilon.changes [pilon] Writing updated NODE_654_length_1743_cov_1.513564_pilon to pilon.fasta [pilon] Writing NODE_655_length_1742_cov_18.269587:1-1742 changes to pilon.changes [pilon] Writing updated NODE_655_length_1742_cov_18.269587_pilon to pilon.fasta [pilon] Writing NODE_656_length_1741_cov_24.046914:1-1741 changes to pilon.changes [pilon] Writing updated NODE_656_length_1741_cov_24.046914_pilon to pilon.fasta [pilon] Writing NODE_657_length_1740_cov_19.904880:1-1740 changes to pilon.changes [pilon] Writing updated NODE_657_length_1740_cov_19.904880_pilon to pilon.fasta [pilon] Writing NODE_658_length_1740_cov_4.126004:1-1740 changes to pilon.changes [pilon] Writing updated NODE_658_length_1740_cov_4.126004_pilon to pilon.fasta [pilon] Writing NODE_659_length_1739_cov_24.737948:1-1739 changes to pilon.changes [pilon] Writing updated NODE_659_length_1739_cov_24.737948_pilon to pilon.fasta [pilon] Writing NODE_660_length_1738_cov_2.512059:1-1738 changes to pilon.changes [pilon] Writing updated NODE_660_length_1738_cov_2.512059_pilon to pilon.fasta [pilon] Writing NODE_661_length_1736_cov_16.328793:1-1736 changes to pilon.changes [pilon] Writing updated NODE_661_length_1736_cov_16.328793_pilon to pilon.fasta [pilon] Writing NODE_662_length_1736_cov_2.338080:1-1736 changes to pilon.changes [pilon] Writing updated NODE_662_length_1736_cov_2.338080_pilon to pilon.fasta [pilon] Writing NODE_663_length_1734_cov_22.393056:1-1734 changes to pilon.changes [pilon] Writing updated NODE_663_length_1734_cov_22.393056_pilon to pilon.fasta [pilon] Writing NODE_664_length_1733_cov_36.583747:1-1733 changes to pilon.changes [pilon] Writing updated NODE_664_length_1733_cov_36.583747_pilon to pilon.fasta [pilon] Writing NODE_665_length_1733_cov_35.655707:1-1733 changes to pilon.changes [pilon] Writing updated NODE_665_length_1733_cov_35.655707_pilon to pilon.fasta [pilon] Writing NODE_666_length_1731_cov_41.323602:1-1731 changes to pilon.changes [pilon] Writing updated NODE_666_length_1731_cov_41.323602_pilon to pilon.fasta [pilon] Writing NODE_667_length_1731_cov_13.938509:1-1731 changes to pilon.changes [pilon] Writing updated NODE_667_length_1731_cov_13.938509_pilon to pilon.fasta [pilon] Writing NODE_668_length_1730_cov_23.631448:1-1730 changes to pilon.changes [pilon] Writing updated NODE_668_length_1730_cov_23.631448_pilon to pilon.fasta [pilon] Writing NODE_669_length_1729_cov_20.634328:1-1729 changes to pilon.changes [pilon] Writing updated NODE_669_length_1729_cov_20.634328_pilon to pilon.fasta [pilon] Writing NODE_670_length_1729_cov_2.188433:1-1729 changes to pilon.changes [pilon] Writing updated NODE_670_length_1729_cov_2.188433_pilon to pilon.fasta [pilon] Writing NODE_671_length_1727_cov_17.063512:1-1727 changes to pilon.changes [pilon] Writing updated NODE_671_length_1727_cov_17.063512_pilon to pilon.fasta [pilon] Writing NODE_672_length_1726_cov_33.123364:1-1726 changes to pilon.changes [pilon] Writing updated NODE_672_length_1726_cov_33.123364_pilon to pilon.fasta [pilon] Writing NODE_673_length_1725_cov_27.379676:1-1725 changes to pilon.changes [pilon] Writing updated NODE_673_length_1725_cov_27.379676_pilon to pilon.fasta [pilon] Writing NODE_674_length_1725_cov_17.681421:1-1725 changes to pilon.changes [pilon] Writing updated NODE_674_length_1725_cov_17.681421_pilon to pilon.fasta [pilon] Writing NODE_675_length_1723_cov_22.230337:1-1723 changes to pilon.changes [pilon] Writing updated NODE_675_length_1723_cov_22.230337_pilon to pilon.fasta [pilon] Writing NODE_676_length_1723_cov_4.028090:1-1723 changes to pilon.changes [pilon] Writing updated NODE_676_length_1723_cov_4.028090_pilon to pilon.fasta [pilon] Writing NODE_677_length_1722_cov_2.745784:1-1722 changes to pilon.changes [pilon] Writing updated NODE_677_length_1722_cov_2.745784_pilon to pilon.fasta [pilon] Writing NODE_678_length_1720_cov_19.862414:1-1720 changes to pilon.changes [pilon] Writing updated NODE_678_length_1720_cov_19.862414_pilon to pilon.fasta [pilon] Writing NODE_679_length_1720_cov_15.195747:1-1720 changes to pilon.changes [pilon] Writing updated NODE_679_length_1720_cov_15.195747_pilon to pilon.fasta [pilon] Writing NODE_680_length_1719_cov_26.948686:1-1719 changes to pilon.changes [pilon] Writing updated NODE_680_length_1719_cov_26.948686_pilon to pilon.fasta [pilon] Writing NODE_681_length_1719_cov_12.461202:1-1719 changes to pilon.changes [pilon] Writing updated NODE_681_length_1719_cov_12.461202_pilon to pilon.fasta [pilon] Writing NODE_682_length_1719_cov_12.197747:1-1719 changes to pilon.changes [pilon] Writing updated NODE_682_length_1719_cov_12.197747_pilon to pilon.fasta [pilon] Writing NODE_683_length_1718_cov_9.568566:1-1718 changes to pilon.changes [pilon] Writing updated NODE_683_length_1718_cov_9.568566_pilon to pilon.fasta [pilon] Writing NODE_684_length_1718_cov_2.198497:1-1718 changes to pilon.changes [pilon] Writing updated NODE_684_length_1718_cov_2.198497_pilon to pilon.fasta [pilon] Writing NODE_685_length_1716_cov_14.388088:1-1716 changes to pilon.changes [pilon] Writing updated NODE_685_length_1716_cov_14.388088_pilon to pilon.fasta [pilon] Writing NODE_686_length_1714_cov_2.669178:1-1714 changes to pilon.changes [pilon] Writing updated NODE_686_length_1714_cov_2.669178_pilon to pilon.fasta [pilon] Writing NODE_687_length_1713_cov_13.758794:1-1713 changes to pilon.changes [pilon] Writing updated NODE_687_length_1713_cov_13.758794_pilon to pilon.fasta [pilon] Writing NODE_688_length_1711_cov_19.593711:1-1711 changes to pilon.changes [pilon] Writing updated NODE_688_length_1711_cov_19.593711_pilon to pilon.fasta [pilon] Writing NODE_689_length_1711_cov_1.705031:1-1711 changes to pilon.changes [pilon] Writing updated NODE_689_length_1711_cov_1.705031_pilon to pilon.fasta [pilon] Writing NODE_690_length_1710_cov_18.876652:1-1710 changes to pilon.changes [pilon] Writing updated NODE_690_length_1710_cov_18.876652_pilon to pilon.fasta [pilon] Writing NODE_691_length_1709_cov_24.529597:1-1709 changes to pilon.changes [pilon] Writing updated NODE_691_length_1709_cov_24.529597_pilon to pilon.fasta [pilon] Writing NODE_692_length_1709_cov_2.154282:1-1709 changes to pilon.changes [pilon] Writing updated NODE_692_length_1709_cov_2.154282_pilon to pilon.fasta [pilon] Writing NODE_693_length_1709_cov_1.948992:1-1709 changes to pilon.changes [pilon] Writing updated NODE_693_length_1709_cov_1.948992_pilon to pilon.fasta [pilon] Writing NODE_694_length_1708_cov_22.580970:1-1708 changes to pilon.changes [pilon] Writing updated NODE_694_length_1708_cov_22.580970_pilon to pilon.fasta [pilon] Writing NODE_695_length_1706_cov_29.847950:1-1706 changes to pilon.changes [pilon] Writing updated NODE_695_length_1706_cov_29.847950_pilon to pilon.fasta [pilon] Writing NODE_696_length_1706_cov_22.578549:1-1706 changes to pilon.changes [pilon] Writing updated NODE_696_length_1706_cov_22.578549_pilon to pilon.fasta [pilon] Writing NODE_697_length_1706_cov_20.143849:1-1706 changes to pilon.changes [pilon] Writing updated NODE_697_length_1706_cov_20.143849_pilon to pilon.fasta [pilon] Writing NODE_698_length_1706_cov_1.511041:1-1706 changes to pilon.changes [pilon] Writing updated NODE_698_length_1706_cov_1.511041_pilon to pilon.fasta [pilon] Writing NODE_699_length_1705_cov_4.745581:1-1705 changes to pilon.changes [pilon] Writing updated NODE_699_length_1705_cov_4.745581_pilon to pilon.fasta [pilon] Writing NODE_700_length_1704_cov_1.828174:1-1704 changes to pilon.changes [pilon] Writing updated NODE_700_length_1704_cov_1.828174_pilon to pilon.fasta [pilon] Writing NODE_701_length_1703_cov_23.945638:1-1703 changes to pilon.changes [pilon] Writing updated NODE_701_length_1703_cov_23.945638_pilon to pilon.fasta [pilon] Writing NODE_702_length_1703_cov_10.187105:1-1703 changes to pilon.changes [pilon] Writing updated NODE_702_length_1703_cov_10.187105_pilon to pilon.fasta [pilon] Writing NODE_703_length_1702_cov_3.328273:1-1702 changes to pilon.changes [pilon] Writing updated NODE_703_length_1702_cov_3.328273_pilon to pilon.fasta [pilon] Writing NODE_704_length_1702_cov_2.702087:1-1702 changes to pilon.changes [pilon] Writing updated NODE_704_length_1702_cov_2.702087_pilon to pilon.fasta [pilon] Writing NODE_705_length_1701_cov_19.932911:1-1701 changes to pilon.changes [pilon] Writing updated NODE_705_length_1701_cov_19.932911_pilon to pilon.fasta [pilon] Writing NODE_706_length_1701_cov_2.570886:1-1701 changes to pilon.changes [pilon] Writing updated NODE_706_length_1701_cov_2.570886_pilon to pilon.fasta [pilon] Writing NODE_707_length_1699_cov_22.822560:1-1699 changes to pilon.changes [pilon] Writing updated NODE_707_length_1699_cov_22.822560_pilon to pilon.fasta [pilon] Writing NODE_708_length_1699_cov_15.169202:1-1699 changes to pilon.changes [pilon] Writing updated NODE_708_length_1699_cov_15.169202_pilon to pilon.fasta [pilon] Writing NODE_709_length_1699_cov_10.545627:1-1699 changes to pilon.changes [pilon] Writing updated NODE_709_length_1699_cov_10.545627_pilon to pilon.fasta [pilon] Writing NODE_710_length_1698_cov_29.161065:1-1698 changes to pilon.changes [pilon] Writing updated NODE_710_length_1698_cov_29.161065_pilon to pilon.fasta [pilon] Writing NODE_711_length_1695_cov_30.069886:1-1695 changes to pilon.changes [pilon] Writing updated NODE_711_length_1695_cov_30.069886_pilon to pilon.fasta [pilon] Writing NODE_712_length_1695_cov_24.520330:1-1695 changes to pilon.changes [pilon] Writing updated NODE_712_length_1695_cov_24.520330_pilon to pilon.fasta [pilon] Writing NODE_713_length_1695_cov_16.915502:1-1695 changes to pilon.changes [pilon] Writing updated NODE_713_length_1695_cov_16.915502_pilon to pilon.fasta [pilon] Writing NODE_714_length_1694_cov_10.537190:1-1694 changes to pilon.changes [pilon] Writing updated NODE_714_length_1694_cov_10.537190_pilon to pilon.fasta [pilon] Writing NODE_715_length_1691_cov_15.928025:1-1691 changes to pilon.changes [pilon] Writing updated NODE_715_length_1691_cov_15.928025_pilon to pilon.fasta [pilon] Writing NODE_716_length_1690_cov_33.225621:1-1690 changes to pilon.changes [pilon] Writing updated NODE_716_length_1690_cov_33.225621_pilon to pilon.fasta [pilon] Writing NODE_717_length_1690_cov_15.511791:1-1690 changes to pilon.changes [pilon] Writing updated NODE_717_length_1690_cov_15.511791_pilon to pilon.fasta [pilon] Writing NODE_718_length_1690_cov_2.801147:1-1690 changes to pilon.changes [pilon] Writing updated NODE_718_length_1690_cov_2.801147_pilon to pilon.fasta [pilon] Writing NODE_719_length_1689_cov_13.121811:1-1689 changes to pilon.changes [pilon] Writing updated NODE_719_length_1689_cov_13.121811_pilon to pilon.fasta [pilon] Writing NODE_720_length_1688_cov_1.809190:1-1688 changes to pilon.changes [pilon] Writing updated NODE_720_length_1688_cov_1.809190_pilon to pilon.fasta [pilon] Writing NODE_721_length_1687_cov_33.287356:1-1687 changes to pilon.changes [pilon] Writing updated NODE_721_length_1687_cov_33.287356_pilon to pilon.fasta [pilon] Writing NODE_722_length_1687_cov_22.678161:1-1687 changes to pilon.changes [pilon] Writing updated NODE_722_length_1687_cov_22.678161_pilon to pilon.fasta [pilon] Writing NODE_723_length_1687_cov_13.906769:1-1687 changes to pilon.changes [pilon] Writing updated NODE_723_length_1687_cov_13.906769_pilon to pilon.fasta [pilon] Writing NODE_724_length_1686_cov_23.033227:1-1686 changes to pilon.changes [pilon] Writing updated NODE_724_length_1686_cov_23.033227_pilon to pilon.fasta [pilon] Writing NODE_725_length_1686_cov_19.040256:1-1686 changes to pilon.changes [pilon] Writing updated NODE_725_length_1686_cov_19.040256_pilon to pilon.fasta [pilon] Writing NODE_726_length_1686_cov_3.282428:1-1686 changes to pilon.changes [pilon] Writing updated NODE_726_length_1686_cov_3.282428_pilon to pilon.fasta [pilon] Writing NODE_727_length_1686_cov_2.109904:1-1686 changes to pilon.changes [pilon] Writing updated NODE_727_length_1686_cov_2.109904_pilon to pilon.fasta [pilon] Writing NODE_728_length_1685_cov_23.729540:1-1685 changes to pilon.changes [pilon] Writing updated NODE_728_length_1685_cov_23.729540_pilon to pilon.fasta [pilon] Writing NODE_729_length_1685_cov_20.274936:1-1685 changes to pilon.changes [pilon] Writing updated NODE_729_length_1685_cov_20.274936_pilon to pilon.fasta [pilon] Writing NODE_730_length_1685_cov_11.605499:1-1685 changes to pilon.changes [pilon] Writing updated NODE_730_length_1685_cov_11.605499_pilon to pilon.fasta [pilon] Writing NODE_731_length_1684_cov_21.715931:1-1684 changes to pilon.changes [pilon] Writing updated NODE_731_length_1684_cov_21.715931_pilon to pilon.fasta [pilon] Writing NODE_732_length_1680_cov_2.756895:1-1680 changes to pilon.changes [pilon] Writing updated NODE_732_length_1680_cov_2.756895_pilon to pilon.fasta [pilon] Writing NODE_733_length_1677_cov_2.825835:1-1677 changes to pilon.changes [pilon] Writing updated NODE_733_length_1677_cov_2.825835_pilon to pilon.fasta [pilon] Writing NODE_734_length_1675_cov_12.714929:1-1675 changes to pilon.changes [pilon] Writing updated NODE_734_length_1675_cov_12.714929_pilon to pilon.fasta [pilon] Writing NODE_735_length_1675_cov_2.857786:1-1675 changes to pilon.changes [pilon] Writing updated NODE_735_length_1675_cov_2.857786_pilon to pilon.fasta [pilon] Writing NODE_736_length_1675_cov_2.003218:1-1675 changes to pilon.changes [pilon] Writing updated NODE_736_length_1675_cov_2.003218_pilon to pilon.fasta [pilon] Writing NODE_737_length_1673_cov_32.079253:1-1673 changes to pilon.changes [pilon] Writing updated NODE_737_length_1673_cov_32.079253_pilon to pilon.fasta [pilon] Writing NODE_738_length_1673_cov_17.554768:1-1673 changes to pilon.changes [pilon] Writing updated NODE_738_length_1673_cov_17.554768_pilon to pilon.fasta [pilon] Writing NODE_739_length_1672_cov_32.618956:1-1672 changes to pilon.changes [pilon] Writing updated NODE_739_length_1672_cov_32.618956_pilon to pilon.fasta [pilon] Writing NODE_740_length_1672_cov_26.618311:1-1672 changes to pilon.changes [pilon] Writing updated NODE_740_length_1672_cov_26.618311_pilon to pilon.fasta [pilon] Writing NODE_741_length_1672_cov_2.511928:1-1672 changes to pilon.changes [pilon] Writing updated NODE_741_length_1672_cov_2.511928_pilon to pilon.fasta [pilon] Writing NODE_742_length_1671_cov_17.543871:1-1671 changes to pilon.changes [pilon] Writing updated NODE_742_length_1671_cov_17.543871_pilon to pilon.fasta [pilon] Writing NODE_743_length_1671_cov_15.239355:1-1671 changes to pilon.changes [pilon] Writing updated NODE_743_length_1671_cov_15.239355_pilon to pilon.fasta [pilon] Writing NODE_744_length_1671_cov_2.585806:1-1671 changes to pilon.changes [pilon] Writing updated NODE_744_length_1671_cov_2.585806_pilon to pilon.fasta [pilon] Writing NODE_745_length_1671_cov_2.528387:1-1671 changes to pilon.changes [pilon] Writing updated NODE_745_length_1671_cov_2.528387_pilon to pilon.fasta [pilon] Writing NODE_746_length_1671_cov_1.616129:1-1671 changes to pilon.changes [pilon] Writing updated NODE_746_length_1671_cov_1.616129_pilon to pilon.fasta [pilon] Writing NODE_747_length_1670_cov_4.363460:1-1670 changes to pilon.changes [pilon] Writing updated NODE_747_length_1670_cov_4.363460_pilon to pilon.fasta [pilon] Writing NODE_748_length_1670_cov_2.001937:1-1670 changes to pilon.changes [pilon] Writing updated NODE_748_length_1670_cov_2.001937_pilon to pilon.fasta [pilon] Writing NODE_749_length_1669_cov_16.492894:1-1669 changes to pilon.changes [pilon] Writing updated NODE_749_length_1669_cov_16.492894_pilon to pilon.fasta [pilon] Writing NODE_750_length_1669_cov_12.555556:1-1669 changes to pilon.changes [pilon] Writing updated NODE_750_length_1669_cov_12.555556_pilon to pilon.fasta [pilon] Writing NODE_751_length_1668_cov_3.131222:1-1668 changes to pilon.changes [pilon] Writing updated NODE_751_length_1668_cov_3.131222_pilon to pilon.fasta [pilon] Writing NODE_752_length_1667_cov_1.478655:1-1667 changes to pilon.changes [pilon] Writing updated NODE_752_length_1667_cov_1.478655_pilon to pilon.fasta [pilon] Writing NODE_753_length_1666_cov_24.038188:1-1666 changes to pilon.changes [pilon] Writing updated NODE_753_length_1666_cov_24.038188_pilon to pilon.fasta [pilon] Writing NODE_754_length_1665_cov_15.117228:1-1665 changes to pilon.changes [pilon] Writing updated NODE_754_length_1665_cov_15.117228_pilon to pilon.fasta [pilon] Writing NODE_755_length_1664_cov_22.342191:1-1664 changes to pilon.changes [pilon] Writing updated NODE_755_length_1664_cov_22.342191_pilon to pilon.fasta [pilon] Writing NODE_756_length_1664_cov_2.615036:1-1664 changes to pilon.changes [pilon] Writing updated NODE_756_length_1664_cov_2.615036_pilon to pilon.fasta [pilon] Writing NODE_757_length_1663_cov_26.064851:1-1663 changes to pilon.changes [pilon] Writing updated NODE_757_length_1663_cov_26.064851_pilon to pilon.fasta [pilon] Writing NODE_758_length_1663_cov_2.055123:1-1663 changes to pilon.changes [pilon] Writing updated NODE_758_length_1663_cov_2.055123_pilon to pilon.fasta [pilon] Writing NODE_759_length_1662_cov_36.730694:1-1662 changes to pilon.changes [pilon] Writing updated NODE_759_length_1662_cov_36.730694_pilon to pilon.fasta [pilon] Writing NODE_760_length_1661_cov_23.073377:1-1661 changes to pilon.changes [pilon] Writing updated NODE_760_length_1661_cov_23.073377_pilon to pilon.fasta [pilon] Writing NODE_761_length_1659_cov_38.705462:1-1659 changes to pilon.changes [pilon] Writing updated NODE_761_length_1659_cov_38.705462_pilon to pilon.fasta [pilon] Writing NODE_762_length_1658_cov_9.854262:1-1658 changes to pilon.changes [pilon] Writing updated NODE_762_length_1658_cov_9.854262_pilon to pilon.fasta [pilon] Writing NODE_763_length_1652_cov_36.203788:1-1652 changes to pilon.changes [pilon] Writing updated NODE_763_length_1652_cov_36.203788_pilon to pilon.fasta [pilon] Writing NODE_764_length_1651_cov_19.264706:1-1651 changes to pilon.changes [pilon] Writing updated NODE_764_length_1651_cov_19.264706_pilon to pilon.fasta [pilon] Writing NODE_765_length_1650_cov_26.083061:1-1650 changes to pilon.changes [pilon] Writing updated NODE_765_length_1650_cov_26.083061_pilon to pilon.fasta [pilon] Writing NODE_766_length_1646_cov_19.795410:1-1646 changes to pilon.changes [pilon] Writing updated NODE_766_length_1646_cov_19.795410_pilon to pilon.fasta [pilon] Writing NODE_767_length_1644_cov_20.049245:1-1644 changes to pilon.changes [pilon] Writing updated NODE_767_length_1644_cov_20.049245_pilon to pilon.fasta [pilon] Writing NODE_768_length_1643_cov_19.911301:1-1643 changes to pilon.changes [pilon] Writing updated NODE_768_length_1643_cov_19.911301_pilon to pilon.fasta [pilon] Writing NODE_769_length_1643_cov_2.575558:1-1643 changes to pilon.changes [pilon] Writing updated NODE_769_length_1643_cov_2.575558_pilon to pilon.fasta [pilon] Writing NODE_770_length_1642_cov_15.886917:1-1642 changes to pilon.changes [pilon] Writing updated NODE_770_length_1642_cov_15.886917_pilon to pilon.fasta [pilon] Writing NODE_771_length_1642_cov_9.789612:1-1642 changes to pilon.changes [pilon] Writing updated NODE_771_length_1642_cov_9.789612_pilon to pilon.fasta [pilon] Writing NODE_772_length_1642_cov_4.140697:1-1642 changes to pilon.changes [pilon] Writing updated NODE_772_length_1642_cov_4.140697_pilon to pilon.fasta [pilon] Writing NODE_773_length_1642_cov_2.592373:1-1642 changes to pilon.changes [pilon] Writing updated NODE_773_length_1642_cov_2.592373_pilon to pilon.fasta [pilon] Writing NODE_774_length_1642_cov_2.249836:1-1642 changes to pilon.changes [pilon] Writing updated NODE_774_length_1642_cov_2.249836_pilon to pilon.fasta [pilon] Writing NODE_775_length_1642_cov_1.388560:1-1642 changes to pilon.changes [pilon] Writing updated NODE_775_length_1642_cov_1.388560_pilon to pilon.fasta [pilon] Writing NODE_776_length_1640_cov_22.020408:1-1640 changes to pilon.changes [pilon] Writing updated NODE_776_length_1640_cov_22.020408_pilon to pilon.fasta [pilon] Writing NODE_777_length_1638_cov_15.046144:1-1638 changes to pilon.changes [pilon] Writing updated NODE_777_length_1638_cov_15.046144_pilon to pilon.fasta [pilon] Writing NODE_778_length_1637_cov_2.116095:1-1637 changes to pilon.changes [pilon] Writing updated NODE_778_length_1637_cov_2.116095_pilon to pilon.fasta [pilon] Writing NODE_779_length_1636_cov_2.281188:1-1636 changes to pilon.changes [pilon] Writing updated NODE_779_length_1636_cov_2.281188_pilon to pilon.fasta [pilon] Writing NODE_780_length_1635_cov_41.115588:1-1635 changes to pilon.changes [pilon] Writing updated NODE_780_length_1635_cov_41.115588_pilon to pilon.fasta [pilon] Writing NODE_781_length_1635_cov_4.483487:1-1635 changes to pilon.changes [pilon] Writing updated NODE_781_length_1635_cov_4.483487_pilon to pilon.fasta [pilon] Writing NODE_782_length_1634_cov_21.113020:1-1634 changes to pilon.changes [pilon] Writing updated NODE_782_length_1634_cov_21.113020_pilon to pilon.fasta [pilon] Writing NODE_783_length_1632_cov_10.962277:1-1632 changes to pilon.changes [pilon] Writing updated NODE_783_length_1632_cov_10.962277_pilon to pilon.fasta [pilon] Writing NODE_784_length_1632_cov_2.893448:1-1632 changes to pilon.changes [pilon] Writing updated NODE_784_length_1632_cov_2.893448_pilon to pilon.fasta [pilon] Writing NODE_785_length_1632_cov_1.823296:1-1632 changes to pilon.changes [pilon] Writing updated NODE_785_length_1632_cov_1.823296_pilon to pilon.fasta [pilon] Writing NODE_786_length_1631_cov_14.746358:1-1631 changes to pilon.changes [pilon] Writing updated NODE_786_length_1631_cov_14.746358_pilon to pilon.fasta [pilon] Writing NODE_787_length_1631_cov_1.972185:1-1631 changes to pilon.changes [pilon] Writing updated NODE_787_length_1631_cov_1.972185_pilon to pilon.fasta [pilon] Writing NODE_788_length_1630_cov_29.630881:1-1630 changes to pilon.changes [pilon] Writing updated NODE_788_length_1630_cov_29.630881_pilon to pilon.fasta [pilon] Writing NODE_789_length_1630_cov_28.007952:1-1630 changes to pilon.changes [pilon] Writing updated NODE_789_length_1630_cov_28.007952_pilon to pilon.fasta [pilon] Writing NODE_790_length_1630_cov_11.119947:1-1630 changes to pilon.changes [pilon] Writing updated NODE_790_length_1630_cov_11.119947_pilon to pilon.fasta [pilon] Writing NODE_791_length_1630_cov_3.599735:1-1630 changes to pilon.changes [pilon] Writing updated NODE_791_length_1630_cov_3.599735_pilon to pilon.fasta [pilon] Writing NODE_792_length_1629_cov_23.314324:1-1629 changes to pilon.changes [pilon] Writing updated NODE_792_length_1629_cov_23.314324_pilon to pilon.fasta [pilon] Writing NODE_793_length_1629_cov_19.566976:1-1629 changes to pilon.changes [pilon] Writing updated NODE_793_length_1629_cov_19.566976_pilon to pilon.fasta [pilon] Writing NODE_794_length_1629_cov_15.671751:1-1629 changes to pilon.changes [pilon] Writing updated NODE_794_length_1629_cov_15.671751_pilon to pilon.fasta [pilon] Writing NODE_795_length_1629_cov_2.842838:1-1629 changes to pilon.changes [pilon] Writing updated NODE_795_length_1629_cov_2.842838_pilon to pilon.fasta [pilon] Writing NODE_796_length_1629_cov_1.968170:1-1629 changes to pilon.changes [pilon] Writing updated NODE_796_length_1629_cov_1.968170_pilon to pilon.fasta [pilon] Writing NODE_797_length_1627_cov_42.405710:1-1627 changes to pilon.changes [pilon] Writing updated NODE_797_length_1627_cov_42.405710_pilon to pilon.fasta [pilon] Writing NODE_798_length_1627_cov_18.073705:1-1627 changes to pilon.changes [pilon] Writing updated NODE_798_length_1627_cov_18.073705_pilon to pilon.fasta [pilon] Writing NODE_799_length_1626_cov_34.685050:1-1626 changes to pilon.changes [pilon] Writing updated NODE_799_length_1626_cov_34.685050_pilon to pilon.fasta [pilon] Writing NODE_800_length_1626_cov_5.761462:1-1626 changes to pilon.changes [pilon] Writing updated NODE_800_length_1626_cov_5.761462_pilon to pilon.fasta [pilon] Writing NODE_801_length_1626_cov_3.299003:1-1626 changes to pilon.changes [pilon] Writing updated NODE_801_length_1626_cov_3.299003_pilon to pilon.fasta [pilon] Writing NODE_802_length_1626_cov_2.181395:1-1626 changes to pilon.changes [pilon] Writing updated NODE_802_length_1626_cov_2.181395_pilon to pilon.fasta [pilon] Writing NODE_803_length_1625_cov_9.599734:1-1625 changes to pilon.changes [pilon] Writing updated NODE_803_length_1625_cov_9.599734_pilon to pilon.fasta [pilon] Writing NODE_804_length_1625_cov_1.716090:1-1625 changes to pilon.changes [pilon] Writing updated NODE_804_length_1625_cov_1.716090_pilon to pilon.fasta [pilon] Writing NODE_805_length_1624_cov_5.065868:1-1624 changes to pilon.changes [pilon] Writing updated NODE_805_length_1624_cov_5.065868_pilon to pilon.fasta [pilon] Writing NODE_806_length_1624_cov_4.955422:1-1624 changes to pilon.changes [pilon] Writing updated NODE_806_length_1624_cov_4.955422_pilon to pilon.fasta [pilon] Writing NODE_807_length_1624_cov_3.779108:1-1624 changes to pilon.changes [pilon] Writing updated NODE_807_length_1624_cov_3.779108_pilon to pilon.fasta [pilon] Writing NODE_808_length_1623_cov_2.406791:1-1623 changes to pilon.changes [pilon] Writing updated NODE_808_length_1623_cov_2.406791_pilon to pilon.fasta [pilon] Writing NODE_809_length_1622_cov_13.906063:1-1622 changes to pilon.changes [pilon] Writing updated NODE_809_length_1622_cov_13.906063_pilon to pilon.fasta [pilon] Writing NODE_810_length_1621_cov_56.018000:1-1621 changes to pilon.changes [pilon] Writing updated NODE_810_length_1621_cov_56.018000_pilon to pilon.fasta [pilon] Writing NODE_811_length_1621_cov_20.628000:1-1621 changes to pilon.changes [pilon] Writing updated NODE_811_length_1621_cov_20.628000_pilon to pilon.fasta [pilon] Writing NODE_812_length_1621_cov_1.974667:1-1621 changes to pilon.changes [pilon] Writing updated NODE_812_length_1621_cov_1.974667_pilon to pilon.fasta [pilon] Writing NODE_813_length_1620_cov_19.476318:1-1620 changes to pilon.changes [pilon] Writing updated NODE_813_length_1620_cov_19.476318_pilon to pilon.fasta [pilon] Writing NODE_814_length_1620_cov_3.589059:1-1620 changes to pilon.changes [pilon] Writing updated NODE_814_length_1620_cov_3.589059_pilon to pilon.fasta [pilon] Writing NODE_815_length_1620_cov_3.053369:1-1620 changes to pilon.changes [pilon] Writing updated NODE_815_length_1620_cov_3.053369_pilon to pilon.fasta [pilon] Writing NODE_816_length_1618_cov_16.150301:1-1618 changes to pilon.changes [pilon] Writing updated NODE_816_length_1618_cov_16.150301_pilon to pilon.fasta [pilon] Writing NODE_817_length_1616_cov_23.424749:1-1616 changes to pilon.changes [pilon] Writing updated NODE_817_length_1616_cov_23.424749_pilon to pilon.fasta [pilon] Writing NODE_818_length_1615_cov_8.313922:1-1615 changes to pilon.changes [pilon] Writing updated NODE_818_length_1615_cov_8.313922_pilon to pilon.fasta [pilon] Writing NODE_819_length_1614_cov_3.643001:1-1614 changes to pilon.changes [pilon] Writing updated NODE_819_length_1614_cov_3.643001_pilon to pilon.fasta [pilon] Writing NODE_820_length_1613_cov_25.926944:1-1613 changes to pilon.changes [pilon] Writing updated NODE_820_length_1613_cov_25.926944_pilon to pilon.fasta [pilon] Writing NODE_821_length_1613_cov_1.869973:1-1613 changes to pilon.changes [pilon] Writing updated NODE_821_length_1613_cov_1.869973_pilon to pilon.fasta [pilon] Writing NODE_822_length_1612_cov_23.477532:1-1612 changes to pilon.changes [pilon] Writing updated NODE_822_length_1612_cov_23.477532_pilon to pilon.fasta [pilon] Writing NODE_823_length_1612_cov_3.978538:1-1612 changes to pilon.changes [pilon] Writing updated NODE_823_length_1612_cov_3.978538_pilon to pilon.fasta [pilon] Writing NODE_824_length_1612_cov_2.112005:1-1612 changes to pilon.changes [pilon] Writing updated NODE_824_length_1612_cov_2.112005_pilon to pilon.fasta [pilon] Writing NODE_825_length_1612_cov_2.010731:1-1612 changes to pilon.changes [pilon] Writing updated NODE_825_length_1612_cov_2.010731_pilon to pilon.fasta [pilon] Writing NODE_826_length_1611_cov_39.850336:1-1611 changes to pilon.changes [pilon] Writing updated NODE_826_length_1611_cov_39.850336_pilon to pilon.fasta [pilon] Writing NODE_827_length_1611_cov_24.190604:1-1611 changes to pilon.changes [pilon] Writing updated NODE_827_length_1611_cov_24.190604_pilon to pilon.fasta [pilon] Writing NODE_828_length_1611_cov_3.671812:1-1611 changes to pilon.changes [pilon] Writing updated NODE_828_length_1611_cov_3.671812_pilon to pilon.fasta [pilon] Writing NODE_829_length_1611_cov_3.428859:1-1611 changes to pilon.changes [pilon] Writing updated NODE_829_length_1611_cov_3.428859_pilon to pilon.fasta [pilon] Writing NODE_830_length_1611_cov_2.648993:1-1611 changes to pilon.changes [pilon] Writing updated NODE_830_length_1611_cov_2.648993_pilon to pilon.fasta [pilon] Writing NODE_831_length_1610_cov_31.977166:1-1610 changes to pilon.changes [pilon] Writing updated NODE_831_length_1610_cov_31.977166_pilon to pilon.fasta [pilon] Writing NODE_832_length_1610_cov_18.599060:1-1610 changes to pilon.changes [pilon] Writing updated NODE_832_length_1610_cov_18.599060_pilon to pilon.fasta [pilon] Writing NODE_833_length_1610_cov_5.840833:1-1610 changes to pilon.changes [pilon] Writing updated NODE_833_length_1610_cov_5.840833_pilon to pilon.fasta [pilon] Writing NODE_834_length_1610_cov_3.986568:1-1610 changes to pilon.changes [pilon] Writing updated NODE_834_length_1610_cov_3.986568_pilon to pilon.fasta [pilon] Writing NODE_835_length_1608_cov_39.405514:1-1608 changes to pilon.changes [pilon] Writing updated NODE_835_length_1608_cov_39.405514_pilon to pilon.fasta [pilon] Writing NODE_836_length_1608_cov_27.455279:1-1608 changes to pilon.changes [pilon] Writing updated NODE_836_length_1608_cov_27.455279_pilon to pilon.fasta [pilon] Writing NODE_837_length_1608_cov_16.561533:1-1608 changes to pilon.changes [pilon] Writing updated NODE_837_length_1608_cov_16.561533_pilon to pilon.fasta [pilon] Writing NODE_838_length_1608_cov_12.316745:1-1608 changes to pilon.changes [pilon] Writing updated NODE_838_length_1608_cov_12.316745_pilon to pilon.fasta [pilon] Writing NODE_839_length_1606_cov_1.657239:1-1606 changes to pilon.changes [pilon] Writing updated NODE_839_length_1606_cov_1.657239_pilon to pilon.fasta [pilon] Writing NODE_840_length_1604_cov_27.667566:1-1604 changes to pilon.changes [pilon] Writing updated NODE_840_length_1604_cov_27.667566_pilon to pilon.fasta [pilon] Writing NODE_841_length_1603_cov_32.439271:1-1603 changes to pilon.changes [pilon] Writing updated NODE_841_length_1603_cov_32.439271_pilon to pilon.fasta [pilon] Writing NODE_842_length_1603_cov_15.781377:1-1603 changes to pilon.changes [pilon] Writing updated NODE_842_length_1603_cov_15.781377_pilon to pilon.fasta [pilon] Writing NODE_843_length_1603_cov_11.848178:1-1603 changes to pilon.changes [pilon] Writing updated NODE_843_length_1603_cov_11.848178_pilon to pilon.fasta [pilon] Writing NODE_844_length_1602_cov_2.686023:1-1602 changes to pilon.changes [pilon] Writing updated NODE_844_length_1602_cov_2.686023_pilon to pilon.fasta [pilon] Writing NODE_845_length_1601_cov_2.407432:1-1601 changes to pilon.changes [pilon] Writing updated NODE_845_length_1601_cov_2.407432_pilon to pilon.fasta [pilon] Writing NODE_846_length_1601_cov_2.127703:1-1601 changes to pilon.changes [pilon] Writing updated NODE_846_length_1601_cov_2.127703_pilon to pilon.fasta [pilon] Writing NODE_847_length_1600_cov_2.358350:1-1600 changes to pilon.changes [pilon] Writing updated NODE_847_length_1600_cov_2.358350_pilon to pilon.fasta [pilon] Writing NODE_848_length_1599_cov_27.535859:1-1599 changes to pilon.changes [pilon] Writing updated NODE_848_length_1599_cov_27.535859_pilon to pilon.fasta [pilon] Writing NODE_849_length_1598_cov_35.360190:1-1598 changes to pilon.changes [pilon] Writing updated NODE_849_length_1598_cov_35.360190_pilon to pilon.fasta [pilon] Writing NODE_850_length_1597_cov_27.157182:1-1597 changes to pilon.changes [pilon] Writing updated NODE_850_length_1597_cov_27.157182_pilon to pilon.fasta [pilon] Writing NODE_851_length_1597_cov_3.043360:1-1597 changes to pilon.changes [pilon] Writing updated NODE_851_length_1597_cov_3.043360_pilon to pilon.fasta [pilon] Writing NODE_852_length_1594_cov_28.918534:1-1594 changes to pilon.changes [pilon] Writing updated NODE_852_length_1594_cov_28.918534_pilon to pilon.fasta [pilon] Writing NODE_853_length_1594_cov_22.742023:1-1594 changes to pilon.changes [pilon] Writing updated NODE_853_length_1594_cov_22.742023_pilon to pilon.fasta [pilon] Writing NODE_854_length_1594_cov_15.853360:1-1594 changes to pilon.changes [pilon] Writing updated NODE_854_length_1594_cov_15.853360_pilon to pilon.fasta [pilon] Writing NODE_855_length_1594_cov_8.447386:1-1594 changes to pilon.changes [pilon] Writing updated NODE_855_length_1594_cov_8.447386_pilon to pilon.fasta [pilon] Writing NODE_856_length_1594_cov_7.152749:1-1594 changes to pilon.changes [pilon] Writing updated NODE_856_length_1594_cov_7.152749_pilon to pilon.fasta [pilon] Writing NODE_857_length_1593_cov_2.269022:1-1593 changes to pilon.changes [pilon] Writing updated NODE_857_length_1593_cov_2.269022_pilon to pilon.fasta [pilon] Writing NODE_858_length_1589_cov_58.848093:1-1589 changes to pilon.changes [pilon] Writing updated NODE_858_length_1589_cov_58.848093_pilon to pilon.fasta [pilon] Writing NODE_859_length_1589_cov_28.920300:1-1589 changes to pilon.changes [pilon] Writing updated NODE_859_length_1589_cov_28.920300_pilon to pilon.fasta [pilon] Writing NODE_860_length_1588_cov_12.516701:1-1588 changes to pilon.changes [pilon] Writing updated NODE_860_length_1588_cov_12.516701_pilon to pilon.fasta [pilon] Writing NODE_861_length_1588_cov_2.184731:1-1588 changes to pilon.changes [pilon] Writing updated NODE_861_length_1588_cov_2.184731_pilon to pilon.fasta [pilon] Writing NODE_862_length_1587_cov_30.674625:1-1587 changes to pilon.changes [pilon] Writing updated NODE_862_length_1587_cov_30.674625_pilon to pilon.fasta [pilon] Writing NODE_863_length_1586_cov_21.606826:1-1586 changes to pilon.changes [pilon] Writing updated NODE_863_length_1586_cov_21.606826_pilon to pilon.fasta [pilon] Writing NODE_864_length_1586_cov_17.154949:1-1586 changes to pilon.changes [pilon] Writing updated NODE_864_length_1586_cov_17.154949_pilon to pilon.fasta [pilon] Writing NODE_865_length_1586_cov_5.334471:1-1586 changes to pilon.changes [pilon] Writing updated NODE_865_length_1586_cov_5.334471_pilon to pilon.fasta [pilon] Writing NODE_866_length_1585_cov_27.694672:1-1585 changes to pilon.changes [pilon] Writing updated NODE_866_length_1585_cov_27.694672_pilon to pilon.fasta [pilon] Writing NODE_867_length_1584_cov_2.922761:1-1584 changes to pilon.changes [pilon] Writing updated NODE_867_length_1584_cov_2.922761_pilon to pilon.fasta [pilon] Writing NODE_868_length_1583_cov_24.293434:1-1583 changes to pilon.changes [pilon] Writing updated NODE_868_length_1583_cov_24.293434_pilon to pilon.fasta [pilon] Writing NODE_869_length_1583_cov_8.370041:1-1583 changes to pilon.changes [pilon] Writing updated NODE_869_length_1583_cov_8.370041_pilon to pilon.fasta [pilon] Writing NODE_870_length_1583_cov_2.577975:1-1583 changes to pilon.changes [pilon] Writing updated NODE_870_length_1583_cov_2.577975_pilon to pilon.fasta [pilon] Writing NODE_871_length_1582_cov_2.072553:1-1582 changes to pilon.changes [pilon] Writing updated NODE_871_length_1582_cov_2.072553_pilon to pilon.fasta [pilon] Writing NODE_872_length_1581_cov_25.136986:1-1581 changes to pilon.changes [pilon] Writing updated NODE_872_length_1581_cov_25.136986_pilon to pilon.fasta [pilon] Writing NODE_873_length_1580_cov_18.647019:1-1580 changes to pilon.changes [pilon] Writing updated NODE_873_length_1580_cov_18.647019_pilon to pilon.fasta [pilon] Writing NODE_874_length_1580_cov_16.738177:1-1580 changes to pilon.changes [pilon] Writing updated NODE_874_length_1580_cov_16.738177_pilon to pilon.fasta [pilon] Writing NODE_875_length_1579_cov_2.202332:1-1579 changes to pilon.changes [pilon] Writing updated NODE_875_length_1579_cov_2.202332_pilon to pilon.fasta [pilon] Writing NODE_876_length_1578_cov_18.879890:1-1578 changes to pilon.changes [pilon] Writing updated NODE_876_length_1578_cov_18.879890_pilon to pilon.fasta [pilon] Writing NODE_877_length_1578_cov_12.807138:1-1578 changes to pilon.changes [pilon] Writing updated NODE_877_length_1578_cov_12.807138_pilon to pilon.fasta [pilon] Writing NODE_878_length_1578_cov_11.372684:1-1578 changes to pilon.changes [pilon] Writing updated NODE_878_length_1578_cov_11.372684_pilon to pilon.fasta [pilon] Writing NODE_879_length_1575_cov_28.340440:1-1575 changes to pilon.changes [pilon] Writing updated NODE_879_length_1575_cov_28.340440_pilon to pilon.fasta [pilon] Writing NODE_880_length_1575_cov_22.387208:1-1575 changes to pilon.changes [pilon] Writing updated NODE_880_length_1575_cov_22.387208_pilon to pilon.fasta [pilon] Writing NODE_881_length_1575_cov_15.211829:1-1575 changes to pilon.changes [pilon] Writing updated NODE_881_length_1575_cov_15.211829_pilon to pilon.fasta [pilon] Writing NODE_882_length_1575_cov_3.136864:1-1575 changes to pilon.changes [pilon] Writing updated NODE_882_length_1575_cov_3.136864_pilon to pilon.fasta [pilon] Writing NODE_883_length_1573_cov_29.494490:1-1573 changes to pilon.changes [pilon] Writing updated NODE_883_length_1573_cov_29.494490_pilon to pilon.fasta [pilon] Writing NODE_884_length_1570_cov_9.394755:1-1570 changes to pilon.changes [pilon] Writing updated NODE_884_length_1570_cov_9.394755_pilon to pilon.fasta [pilon] Writing NODE_885_length_1570_cov_6.926846:1-1570 changes to pilon.changes [pilon] Writing updated NODE_885_length_1570_cov_6.926846_pilon to pilon.fasta [pilon] Writing NODE_886_length_1569_cov_15.989641:1-1569 changes to pilon.changes [pilon] Writing updated NODE_886_length_1569_cov_15.989641_pilon to pilon.fasta [pilon] Writing NODE_887_length_1569_cov_11.531077:1-1569 changes to pilon.changes [pilon] Writing updated NODE_887_length_1569_cov_11.531077_pilon to pilon.fasta [pilon] Writing NODE_888_length_1569_cov_10.138122:1-1569 changes to pilon.changes [pilon] Writing updated NODE_888_length_1569_cov_10.138122_pilon to pilon.fasta [pilon] Writing NODE_889_length_1569_cov_1.681630:1-1569 changes to pilon.changes [pilon] Writing updated NODE_889_length_1569_cov_1.681630_pilon to pilon.fasta [pilon] Writing NODE_890_length_1568_cov_31.639254:1-1568 changes to pilon.changes [pilon] Writing updated NODE_890_length_1568_cov_31.639254_pilon to pilon.fasta [pilon] Writing NODE_891_length_1567_cov_24.383126:1-1567 changes to pilon.changes [pilon] Writing updated NODE_891_length_1567_cov_24.383126_pilon to pilon.fasta [pilon] Writing NODE_892_length_1564_cov_25.633403:1-1564 changes to pilon.changes [pilon] Writing updated NODE_892_length_1564_cov_25.633403_pilon to pilon.fasta [pilon] Writing NODE_893_length_1564_cov_20.727651:1-1564 changes to pilon.changes [pilon] Writing updated NODE_893_length_1564_cov_20.727651_pilon to pilon.fasta [pilon] Writing NODE_894_length_1564_cov_20.532225:1-1564 changes to pilon.changes [pilon] Writing updated NODE_894_length_1564_cov_20.532225_pilon to pilon.fasta [pilon] Writing NODE_895_length_1564_cov_19.243243:1-1564 changes to pilon.changes [pilon] Writing updated NODE_895_length_1564_cov_19.243243_pilon to pilon.fasta [pilon] Writing NODE_896_length_1564_cov_1.956341:1-1564 changes to pilon.changes [pilon] Writing updated NODE_896_length_1564_cov_1.956341_pilon to pilon.fasta [pilon] Writing NODE_897_length_1563_cov_4.649098:1-1563 changes to pilon.changes [pilon] Writing updated NODE_897_length_1563_cov_4.649098_pilon to pilon.fasta [pilon] Writing NODE_898_length_1562_cov_23.925052:1-1562 changes to pilon.changes [pilon] Writing updated NODE_898_length_1562_cov_23.925052_pilon to pilon.fasta [pilon] Writing NODE_899_length_1561_cov_19.210417:1-1561 changes to pilon.changes [pilon] Writing updated NODE_899_length_1561_cov_19.210417_pilon to pilon.fasta [pilon] Writing NODE_900_length_1560_cov_17.057679:1-1560 changes to pilon.changes [pilon] Writing updated NODE_900_length_1560_cov_17.057679_pilon to pilon.fasta [pilon] Writing NODE_901_length_1560_cov_13.270327:1-1560 changes to pilon.changes [pilon] Writing updated NODE_901_length_1560_cov_13.270327_pilon to pilon.fasta [pilon] Writing NODE_902_length_1555_cov_27.465830:1-1555 changes to pilon.changes [pilon] Writing updated NODE_902_length_1555_cov_27.465830_pilon to pilon.fasta [pilon] Writing NODE_903_length_1555_cov_23.447001:1-1555 changes to pilon.changes [pilon] Writing updated NODE_903_length_1555_cov_23.447001_pilon to pilon.fasta [pilon] Writing NODE_904_length_1554_cov_5.335659:1-1554 changes to pilon.changes [pilon] Writing updated NODE_904_length_1554_cov_5.335659_pilon to pilon.fasta [pilon] Writing NODE_905_length_1553_cov_7.826117:1-1553 changes to pilon.changes [pilon] Writing updated NODE_905_length_1553_cov_7.826117_pilon to pilon.fasta [pilon] Writing NODE_906_length_1552_cov_13.136268:1-1552 changes to pilon.changes [pilon] Writing updated NODE_906_length_1552_cov_13.136268_pilon to pilon.fasta [pilon] Writing NODE_907_length_1552_cov_2.574423:1-1552 changes to pilon.changes [pilon] Writing updated NODE_907_length_1552_cov_2.574423_pilon to pilon.fasta [pilon] Writing NODE_908_length_1551_cov_13.099301:1-1551 changes to pilon.changes [pilon] Writing updated NODE_908_length_1551_cov_13.099301_pilon to pilon.fasta [pilon] Writing NODE_909_length_1550_cov_46.367390:1-1550 changes to pilon.changes [pilon] Writing updated NODE_909_length_1550_cov_46.367390_pilon to pilon.fasta [pilon] Writing NODE_910_length_1550_cov_20.430371:1-1550 changes to pilon.changes [pilon] Writing updated NODE_910_length_1550_cov_20.430371_pilon to pilon.fasta [pilon] Writing NODE_911_length_1549_cov_13.331232:1-1549 changes to pilon.changes [pilon] Writing updated NODE_911_length_1549_cov_13.331232_pilon to pilon.fasta [pilon] Writing NODE_912_length_1549_cov_7.652661:1-1549 changes to pilon.changes [pilon] Writing updated NODE_912_length_1549_cov_7.652661_pilon to pilon.fasta [pilon] Writing NODE_913_length_1548_cov_22.002803:1-1548 changes to pilon.changes [pilon] Writing updated NODE_913_length_1548_cov_22.002803_pilon to pilon.fasta [pilon] Writing NODE_914_length_1548_cov_14.461808:1-1548 changes to pilon.changes [pilon] Writing updated NODE_914_length_1548_cov_14.461808_pilon to pilon.fasta [pilon] Writing NODE_915_length_1547_cov_23.330996:1-1547 changes to pilon.changes [pilon] Writing updated NODE_915_length_1547_cov_23.330996_pilon to pilon.fasta [pilon] Writing NODE_916_length_1547_cov_2.754558:1-1547 changes to pilon.changes [pilon] Writing updated NODE_916_length_1547_cov_2.754558_pilon to pilon.fasta [pilon] Writing NODE_917_length_1546_cov_22.197895:1-1546 changes to pilon.changes [pilon] Writing updated NODE_917_length_1546_cov_22.197895_pilon to pilon.fasta [pilon] Writing NODE_918_length_1545_cov_3.862360:1-1545 changes to pilon.changes [pilon] Writing updated NODE_918_length_1545_cov_3.862360_pilon to pilon.fasta [pilon] Writing NODE_919_length_1545_cov_3.846208:1-1545 changes to pilon.changes [pilon] Writing updated NODE_919_length_1545_cov_3.846208_pilon to pilon.fasta [pilon] Writing NODE_920_length_1545_cov_3.057584:1-1545 changes to pilon.changes [pilon] Writing updated NODE_920_length_1545_cov_3.057584_pilon to pilon.fasta [pilon] Writing NODE_921_length_1544_cov_24.203092:1-1544 changes to pilon.changes [pilon] Writing updated NODE_921_length_1544_cov_24.203092_pilon to pilon.fasta [pilon] Writing NODE_922_length_1544_cov_16.208011:1-1544 changes to pilon.changes [pilon] Writing updated NODE_922_length_1544_cov_16.208011_pilon to pilon.fasta [pilon] Writing NODE_923_length_1543_cov_39.791842:1-1543 changes to pilon.changes [pilon] Writing updated NODE_923_length_1543_cov_39.791842_pilon to pilon.fasta [pilon] Writing NODE_924_length_1543_cov_6.238397:1-1543 changes to pilon.changes [pilon] Writing updated NODE_924_length_1543_cov_6.238397_pilon to pilon.fasta [pilon] Writing NODE_925_length_1543_cov_4.144866:1-1543 changes to pilon.changes [pilon] Writing updated NODE_925_length_1543_cov_4.144866_pilon to pilon.fasta [pilon] Writing NODE_926_length_1542_cov_21.565799:1-1542 changes to pilon.changes [pilon] Writing updated NODE_926_length_1542_cov_21.565799_pilon to pilon.fasta [pilon] Writing NODE_927_length_1542_cov_13.971147:1-1542 changes to pilon.changes [pilon] Writing updated NODE_927_length_1542_cov_13.971147_pilon to pilon.fasta [pilon] Writing NODE_928_length_1542_cov_2.384236:1-1542 changes to pilon.changes [pilon] Writing updated NODE_928_length_1542_cov_2.384236_pilon to pilon.fasta [pilon] Writing NODE_929_length_1541_cov_43.703521:1-1541 changes to pilon.changes [pilon] Writing updated NODE_929_length_1541_cov_43.703521_pilon to pilon.fasta [pilon] Writing NODE_930_length_1541_cov_16.499296:1-1541 changes to pilon.changes [pilon] Writing updated NODE_930_length_1541_cov_16.499296_pilon to pilon.fasta [pilon] Writing NODE_931_length_1540_cov_18.535588:1-1540 changes to pilon.changes [pilon] Writing updated NODE_931_length_1540_cov_18.535588_pilon to pilon.fasta [pilon] Writing NODE_932_length_1539_cov_41.311707:1-1539 changes to pilon.changes [pilon] Writing updated NODE_932_length_1539_cov_41.311707_pilon to pilon.fasta [pilon] Writing NODE_933_length_1539_cov_16.755994:1-1539 changes to pilon.changes [pilon] Writing updated NODE_933_length_1539_cov_16.755994_pilon to pilon.fasta [pilon] Writing NODE_934_length_1538_cov_17.852505:1-1538 changes to pilon.changes [pilon] Writing updated NODE_934_length_1538_cov_17.852505_pilon to pilon.fasta [pilon] Writing NODE_935_length_1537_cov_19.110169:1-1537 changes to pilon.changes [pilon] Writing updated NODE_935_length_1537_cov_19.110169_pilon to pilon.fasta [pilon] Writing NODE_936_length_1537_cov_17.875000:1-1537 changes to pilon.changes [pilon] Writing updated NODE_936_length_1537_cov_17.875000_pilon to pilon.fasta [pilon] Writing NODE_937_length_1537_cov_12.387006:1-1537 changes to pilon.changes [pilon] Writing updated NODE_937_length_1537_cov_12.387006_pilon to pilon.fasta [pilon] Writing NODE_938_length_1536_cov_8.859364:1-1536 changes to pilon.changes [pilon] Writing updated NODE_938_length_1536_cov_8.859364_pilon to pilon.fasta [pilon] Writing NODE_939_length_1535_cov_22.969590:1-1535 changes to pilon.changes [pilon] Writing updated NODE_939_length_1535_cov_22.969590_pilon to pilon.fasta [pilon] Writing NODE_940_length_1535_cov_3.505658:1-1535 changes to pilon.changes [pilon] Writing updated NODE_940_length_1535_cov_3.505658_pilon to pilon.fasta [pilon] Writing NODE_941_length_1534_cov_2.207360:1-1534 changes to pilon.changes [pilon] Writing updated NODE_941_length_1534_cov_2.207360_pilon to pilon.fasta [pilon] Writing NODE_942_length_1533_cov_45.223796:1-1533 changes to pilon.changes [pilon] Writing updated NODE_942_length_1533_cov_45.223796_pilon to pilon.fasta [pilon] Writing NODE_943_length_1533_cov_24.207507:1-1533 changes to pilon.changes [pilon] Writing updated NODE_943_length_1533_cov_24.207507_pilon to pilon.fasta [pilon] Writing NODE_944_length_1533_cov_12.982295:1-1533 changes to pilon.changes [pilon] Writing updated NODE_944_length_1533_cov_12.982295_pilon to pilon.fasta [pilon] Writing NODE_945_length_1532_cov_11.194897:1-1532 changes to pilon.changes [pilon] Writing updated NODE_945_length_1532_cov_11.194897_pilon to pilon.fasta [pilon] Writing NODE_946_length_1531_cov_26.238298:1-1531 changes to pilon.changes [pilon] Writing updated NODE_946_length_1531_cov_26.238298_pilon to pilon.fasta [pilon] Writing NODE_947_length_1531_cov_20.127660:1-1531 changes to pilon.changes [pilon] Writing updated NODE_947_length_1531_cov_20.127660_pilon to pilon.fasta [pilon] Writing NODE_948_length_1528_cov_29.526652:1-1528 changes to pilon.changes [pilon] Writing updated NODE_948_length_1528_cov_29.526652_pilon to pilon.fasta [pilon] Writing NODE_949_length_1528_cov_17.950249:1-1528 changes to pilon.changes [pilon] Writing updated NODE_949_length_1528_cov_17.950249_pilon to pilon.fasta [pilon] Writing NODE_950_length_1527_cov_31.970128:1-1527 changes to pilon.changes [pilon] Writing updated NODE_950_length_1527_cov_31.970128_pilon to pilon.fasta [pilon] Writing NODE_951_length_1527_cov_23.800142:1-1527 changes to pilon.changes [pilon] Writing updated NODE_951_length_1527_cov_23.800142_pilon to pilon.fasta [pilon] Writing NODE_952_length_1527_cov_13.939545:1-1527 changes to pilon.changes [pilon] Writing updated NODE_952_length_1527_cov_13.939545_pilon to pilon.fasta [pilon] Writing NODE_953_length_1526_cov_31.797865:1-1526 changes to pilon.changes [pilon] Writing updated NODE_953_length_1526_cov_31.797865_pilon to pilon.fasta [pilon] Writing NODE_954_length_1526_cov_8.772242:1-1526 changes to pilon.changes [pilon] Writing updated NODE_954_length_1526_cov_8.772242_pilon to pilon.fasta [pilon] Writing NODE_955_length_1524_cov_21.408411:1-1524 changes to pilon.changes [pilon] Writing updated NODE_955_length_1524_cov_21.408411_pilon to pilon.fasta [pilon] Writing NODE_956_length_1524_cov_16.923735:1-1524 changes to pilon.changes [pilon] Writing updated NODE_956_length_1524_cov_16.923735_pilon to pilon.fasta [pilon] Writing NODE_957_length_1522_cov_21.349036:1-1522 changes to pilon.changes [pilon] Writing updated NODE_957_length_1522_cov_21.349036_pilon to pilon.fasta [pilon] Writing NODE_958_length_1521_cov_1.430714:1-1521 changes to pilon.changes [pilon] Writing updated NODE_958_length_1521_cov_1.430714_pilon to pilon.fasta [pilon] Writing NODE_959_length_1520_cov_2.720515:1-1520 changes to pilon.changes [pilon] Writing updated NODE_959_length_1520_cov_2.720515_pilon to pilon.fasta [pilon] Writing NODE_960_length_1519_cov_1.987124:1-1519 changes to pilon.changes [pilon] Writing updated NODE_960_length_1519_cov_1.987124_pilon to pilon.fasta [pilon] Writing NODE_961_length_1518_cov_28.201861:1-1518 changes to pilon.changes [pilon] Writing updated NODE_961_length_1518_cov_28.201861_pilon to pilon.fasta [pilon] Writing NODE_962_length_1517_cov_29.771490:1-1517 changes to pilon.changes [pilon] Writing updated NODE_962_length_1517_cov_29.771490_pilon to pilon.fasta [pilon] Writing NODE_963_length_1517_cov_18.126074:1-1517 changes to pilon.changes [pilon] Writing updated NODE_963_length_1517_cov_18.126074_pilon to pilon.fasta [pilon] Writing NODE_964_length_1516_cov_28.189247:1-1516 changes to pilon.changes [pilon] Writing updated NODE_964_length_1516_cov_28.189247_pilon to pilon.fasta [pilon] Writing NODE_965_length_1516_cov_3.031541:1-1516 changes to pilon.changes [pilon] Writing updated NODE_965_length_1516_cov_3.031541_pilon to pilon.fasta [pilon] Writing NODE_966_length_1515_cov_4.102582:1-1515 changes to pilon.changes [pilon] Writing updated NODE_966_length_1515_cov_4.102582_pilon to pilon.fasta [pilon] Writing NODE_967_length_1515_cov_1.674319:1-1515 changes to pilon.changes [pilon] Writing updated NODE_967_length_1515_cov_1.674319_pilon to pilon.fasta [pilon] Writing NODE_968_length_1514_cov_21.521177:1-1514 changes to pilon.changes [pilon] Writing updated NODE_968_length_1514_cov_21.521177_pilon to pilon.fasta [pilon] Writing NODE_969_length_1514_cov_21.242642:1-1514 changes to pilon.changes [pilon] Writing updated NODE_969_length_1514_cov_21.242642_pilon to pilon.fasta [pilon] Writing NODE_970_length_1514_cov_1.780330:1-1514 changes to pilon.changes [pilon] Writing updated NODE_970_length_1514_cov_1.780330_pilon to pilon.fasta [pilon] Writing NODE_971_length_1513_cov_57.696121:1-1513 changes to pilon.changes [pilon] Writing updated NODE_971_length_1513_cov_57.696121_pilon to pilon.fasta [pilon] Writing NODE_972_length_1512_cov_23.028037:1-1512 changes to pilon.changes [pilon] Writing updated NODE_972_length_1512_cov_23.028037_pilon to pilon.fasta [pilon] Writing NODE_973_length_1512_cov_16.711718:1-1512 changes to pilon.changes [pilon] Writing updated NODE_973_length_1512_cov_16.711718_pilon to pilon.fasta [pilon] Writing NODE_974_length_1511_cov_15.873381:1-1511 changes to pilon.changes [pilon] Writing updated NODE_974_length_1511_cov_15.873381_pilon to pilon.fasta [pilon] Writing NODE_975_length_1511_cov_12.332374:1-1511 changes to pilon.changes [pilon] Writing updated NODE_975_length_1511_cov_12.332374_pilon to pilon.fasta [pilon] Writing NODE_976_length_1511_cov_3.257554:1-1511 changes to pilon.changes [pilon] Writing updated NODE_976_length_1511_cov_3.257554_pilon to pilon.fasta [pilon] Writing NODE_977_length_1511_cov_2.558273:1-1511 changes to pilon.changes [pilon] Writing updated NODE_977_length_1511_cov_2.558273_pilon to pilon.fasta [pilon] Writing NODE_978_length_1511_cov_1.616547:1-1511 changes to pilon.changes [pilon] Writing updated NODE_978_length_1511_cov_1.616547_pilon to pilon.fasta [pilon] Writing NODE_979_length_1510_cov_3.975522:1-1510 changes to pilon.changes [pilon] Writing updated NODE_979_length_1510_cov_3.975522_pilon to pilon.fasta [pilon] Writing NODE_980_length_1509_cov_1.510086:1-1509 changes to pilon.changes [pilon] Writing updated NODE_980_length_1509_cov_1.510086_pilon to pilon.fasta [pilon] Writing NODE_981_length_1508_cov_13.724585:1-1508 changes to pilon.changes [pilon] Writing updated NODE_981_length_1508_cov_13.724585_pilon to pilon.fasta [pilon] Writing NODE_982_length_1508_cov_1.972603:1-1508 changes to pilon.changes [pilon] Writing updated NODE_982_length_1508_cov_1.972603_pilon to pilon.fasta [pilon] Writing NODE_983_length_1507_cov_12.523810:1-1507 changes to pilon.changes [pilon] Writing updated NODE_983_length_1507_cov_12.523810_pilon to pilon.fasta [pilon] Writing NODE_984_length_1507_cov_3.275613:1-1507 changes to pilon.changes [pilon] Writing updated NODE_984_length_1507_cov_3.275613_pilon to pilon.fasta [pilon] Writing NODE_985_length_1505_cov_17.910405:1-1505 changes to pilon.changes [pilon] Writing updated NODE_985_length_1505_cov_17.910405_pilon to pilon.fasta [pilon] Writing NODE_986_length_1505_cov_0.885838:1-1505 changes to pilon.changes [pilon] Writing updated NODE_986_length_1505_cov_0.885838_pilon to pilon.fasta [pilon] Writing NODE_987_length_1504_cov_10.920463:1-1504 changes to pilon.changes [pilon] Writing updated NODE_987_length_1504_cov_10.920463_pilon to pilon.fasta [pilon] Writing NODE_988_length_1504_cov_4.458424:1-1504 changes to pilon.changes [pilon] Writing updated NODE_988_length_1504_cov_4.458424_pilon to pilon.fasta [pilon] Writing NODE_989_length_1504_cov_1.725958:1-1504 changes to pilon.changes [pilon] Writing updated NODE_989_length_1504_cov_1.725958_pilon to pilon.fasta [pilon] Writing NODE_990_length_1503_cov_4.354559:1-1503 changes to pilon.changes [pilon] Writing updated NODE_990_length_1503_cov_4.354559_pilon to pilon.fasta [pilon] Writing NODE_991_length_1503_cov_1.924023:1-1503 changes to pilon.changes [pilon] Writing updated NODE_991_length_1503_cov_1.924023_pilon to pilon.fasta [pilon] Writing NODE_992_length_1500_cov_25.879623:1-1500 changes to pilon.changes [pilon] Writing updated NODE_992_length_1500_cov_25.879623_pilon to pilon.fasta [pilon] Writing NODE_993_length_1499_cov_22.760522:1-1499 changes to pilon.changes [pilon] Writing updated NODE_993_length_1499_cov_22.760522_pilon to pilon.fasta [pilon] Writing NODE_994_length_1499_cov_21.420900:1-1499 changes to pilon.changes [pilon] Writing updated NODE_994_length_1499_cov_21.420900_pilon to pilon.fasta [pilon] Writing NODE_995_length_1496_cov_22.752000:1-1496 changes to pilon.changes [pilon] Writing updated NODE_995_length_1496_cov_22.752000_pilon to pilon.fasta [pilon] Writing NODE_996_length_1496_cov_18.808727:1-1496 changes to pilon.changes [pilon] Writing updated NODE_996_length_1496_cov_18.808727_pilon to pilon.fasta [pilon] Writing NODE_997_length_1496_cov_13.787636:1-1496 changes to pilon.changes [pilon] Writing updated NODE_997_length_1496_cov_13.787636_pilon to pilon.fasta [pilon] Writing NODE_998_length_1496_cov_3.173818:1-1496 changes to pilon.changes [pilon] Writing updated NODE_998_length_1496_cov_3.173818_pilon to pilon.fasta [pilon] Writing NODE_999_length_1495_cov_18.762737:1-1495 changes to pilon.changes [pilon] Writing updated NODE_999_length_1495_cov_18.762737_pilon to pilon.fasta [pilon] Writing NODE_1000_length_1494_cov_16.683176:1-1494 changes to pilon.changes [pilon] Writing updated NODE_1000_length_1494_cov_16.683176_pilon to pilon.fasta [pilon] Writing NODE_1001_length_1494_cov_12.132556:1-1494 changes to pilon.changes [pilon] Writing updated NODE_1001_length_1494_cov_12.132556_pilon to pilon.fasta [pilon] Writing NODE_1002_length_1492_cov_2.420131:1-1492 changes to pilon.changes [pilon] Writing updated NODE_1002_length_1492_cov_2.420131_pilon to pilon.fasta [pilon] Writing NODE_1003_length_1491_cov_18.708029:1-1491 changes to pilon.changes [pilon] Writing updated NODE_1003_length_1491_cov_18.708029_pilon to pilon.fasta [pilon] Writing NODE_1004_length_1491_cov_12.904380:1-1491 changes to pilon.changes [pilon] Writing updated NODE_1004_length_1491_cov_12.904380_pilon to pilon.fasta [pilon] Writing NODE_1005_length_1491_cov_3.470073:1-1491 changes to pilon.changes [pilon] Writing updated NODE_1005_length_1491_cov_3.470073_pilon to pilon.fasta [pilon] Writing NODE_1006_length_1491_cov_2.536496:1-1491 changes to pilon.changes [pilon] Writing updated NODE_1006_length_1491_cov_2.536496_pilon to pilon.fasta [pilon] Writing NODE_1007_length_1491_cov_0.941606:1-1491 changes to pilon.changes [pilon] Writing updated NODE_1007_length_1491_cov_0.941606_pilon to pilon.fasta [pilon] Writing NODE_1008_length_1490_cov_27.914536:1-1490 changes to pilon.changes [pilon] Writing updated NODE_1008_length_1490_cov_27.914536_pilon to pilon.fasta [pilon] Writing NODE_1009_length_1490_cov_3.824690:1-1490 changes to pilon.changes [pilon] Writing updated NODE_1009_length_1490_cov_3.824690_pilon to pilon.fasta [pilon] Writing NODE_1010_length_1490_cov_1.539080:1-1490 changes to pilon.changes [pilon] Writing updated NODE_1010_length_1490_cov_1.539080_pilon to pilon.fasta [pilon] Writing NODE_1011_length_1489_cov_15.762427:1-1489 changes to pilon.changes [pilon] Writing updated NODE_1011_length_1489_cov_15.762427_pilon to pilon.fasta [pilon] Writing NODE_1012_length_1489_cov_3.772661:1-1489 changes to pilon.changes [pilon] Writing updated NODE_1012_length_1489_cov_3.772661_pilon to pilon.fasta [pilon] Writing NODE_1013_length_1489_cov_2.701023:1-1489 changes to pilon.changes [pilon] Writing updated NODE_1013_length_1489_cov_2.701023_pilon to pilon.fasta [pilon] Writing NODE_1014_length_1488_cov_21.150695:1-1488 changes to pilon.changes [pilon] Writing updated NODE_1014_length_1488_cov_21.150695_pilon to pilon.fasta [pilon] Writing NODE_1015_length_1487_cov_40.479502:1-1487 changes to pilon.changes [pilon] Writing updated NODE_1015_length_1487_cov_40.479502_pilon to pilon.fasta [pilon] Writing NODE_1016_length_1487_cov_23.760615:1-1487 changes to pilon.changes [pilon] Writing updated NODE_1016_length_1487_cov_23.760615_pilon to pilon.fasta [pilon] Writing NODE_1017_length_1487_cov_17.221083:1-1487 changes to pilon.changes [pilon] Writing updated NODE_1017_length_1487_cov_17.221083_pilon to pilon.fasta [pilon] Writing NODE_1018_length_1487_cov_1.435578:1-1487 changes to pilon.changes [pilon] Writing updated NODE_1018_length_1487_cov_1.435578_pilon to pilon.fasta [pilon] Writing NODE_1019_length_1486_cov_27.120879:1-1486 changes to pilon.changes [pilon] Writing updated NODE_1019_length_1486_cov_27.120879_pilon to pilon.fasta [pilon] Writing NODE_1020_length_1485_cov_15.201613:1-1485 changes to pilon.changes [pilon] Writing updated NODE_1020_length_1485_cov_15.201613_pilon to pilon.fasta [pilon] Writing NODE_1021_length_1485_cov_7.766129:1-1485 changes to pilon.changes [pilon] Writing updated NODE_1021_length_1485_cov_7.766129_pilon to pilon.fasta [pilon] Writing NODE_1022_length_1485_cov_1.997067:1-1485 changes to pilon.changes [pilon] Writing updated NODE_1022_length_1485_cov_1.997067_pilon to pilon.fasta [pilon] Writing NODE_1023_length_1484_cov_9.287601:1-1484 changes to pilon.changes [pilon] Writing updated NODE_1023_length_1484_cov_9.287601_pilon to pilon.fasta [pilon] Writing NODE_1024_length_1483_cov_23.698972:1-1483 changes to pilon.changes [pilon] Writing updated NODE_1024_length_1483_cov_23.698972_pilon to pilon.fasta [pilon] Writing NODE_1025_length_1482_cov_17.448935:1-1482 changes to pilon.changes [pilon] Writing updated NODE_1025_length_1482_cov_17.448935_pilon to pilon.fasta [pilon] Writing NODE_1026_length_1482_cov_16.453343:1-1482 changes to pilon.changes [pilon] Writing updated NODE_1026_length_1482_cov_16.453343_pilon to pilon.fasta [pilon] Writing NODE_1027_length_1482_cov_3.183688:1-1482 changes to pilon.changes [pilon] Writing updated NODE_1027_length_1482_cov_3.183688_pilon to pilon.fasta [pilon] Writing NODE_1028_length_1482_cov_2.625276:1-1482 changes to pilon.changes [pilon] Writing updated NODE_1028_length_1482_cov_2.625276_pilon to pilon.fasta [pilon] Writing NODE_1029_length_1481_cov_27.687500:1-1481 changes to pilon.changes [pilon] Writing updated NODE_1029_length_1481_cov_27.687500_pilon to pilon.fasta [pilon] Writing NODE_1030_length_1481_cov_2.222059:1-1481 changes to pilon.changes [pilon] Writing updated NODE_1030_length_1481_cov_2.222059_pilon to pilon.fasta [pilon] Writing NODE_1031_length_1479_cov_20.027982:1-1479 changes to pilon.changes [pilon] Writing updated NODE_1031_length_1479_cov_20.027982_pilon to pilon.fasta [pilon] Writing NODE_1032_length_1479_cov_2.670839:1-1479 changes to pilon.changes [pilon] Writing updated NODE_1032_length_1479_cov_2.670839_pilon to pilon.fasta [pilon] Writing NODE_1033_length_1478_cov_2.239499:1-1478 changes to pilon.changes [pilon] Writing updated NODE_1033_length_1478_cov_2.239499_pilon to pilon.fasta [pilon] Writing NODE_1034_length_1477_cov_32.189528:1-1477 changes to pilon.changes [pilon] Writing updated NODE_1034_length_1477_cov_32.189528_pilon to pilon.fasta [pilon] Writing NODE_1035_length_1477_cov_20.870944:1-1477 changes to pilon.changes [pilon] Writing updated NODE_1035_length_1477_cov_20.870944_pilon to pilon.fasta [pilon] Writing NODE_1036_length_1475_cov_15.328656:1-1475 changes to pilon.changes [pilon] Writing updated NODE_1036_length_1475_cov_15.328656_pilon to pilon.fasta [pilon] Writing NODE_1037_length_1475_cov_15.142541:1-1475 changes to pilon.changes [pilon] Writing updated NODE_1037_length_1475_cov_15.142541_pilon to pilon.fasta [pilon] Writing NODE_1038_length_1474_cov_30.397635:1-1474 changes to pilon.changes [pilon] Writing updated NODE_1038_length_1474_cov_30.397635_pilon to pilon.fasta [pilon] Writing NODE_1039_length_1474_cov_17.087953:1-1474 changes to pilon.changes [pilon] Writing updated NODE_1039_length_1474_cov_17.087953_pilon to pilon.fasta [pilon] Writing NODE_1040_length_1473_cov_25.276627:1-1473 changes to pilon.changes [pilon] Writing updated NODE_1040_length_1473_cov_25.276627_pilon to pilon.fasta [pilon] Writing NODE_1041_length_1473_cov_16.115385:1-1473 changes to pilon.changes [pilon] Writing updated NODE_1041_length_1473_cov_16.115385_pilon to pilon.fasta [pilon] Writing NODE_1042_length_1473_cov_13.505178:1-1473 changes to pilon.changes [pilon] Writing updated NODE_1042_length_1473_cov_13.505178_pilon to pilon.fasta [pilon] Writing NODE_1043_length_1471_cov_22.137778:1-1471 changes to pilon.changes [pilon] Writing updated NODE_1043_length_1471_cov_22.137778_pilon to pilon.fasta [pilon] Writing NODE_1044_length_1471_cov_13.909630:1-1471 changes to pilon.changes [pilon] Writing updated NODE_1044_length_1471_cov_13.909630_pilon to pilon.fasta [pilon] Writing NODE_1045_length_1471_cov_2.241481:1-1471 changes to pilon.changes [pilon] Writing updated NODE_1045_length_1471_cov_2.241481_pilon to pilon.fasta [pilon] Writing NODE_1046_length_1470_cov_21.551520:1-1470 changes to pilon.changes [pilon] Writing updated NODE_1046_length_1470_cov_21.551520_pilon to pilon.fasta [pilon] Writing NODE_1047_length_1470_cov_14.280208:1-1470 changes to pilon.changes [pilon] Writing updated NODE_1047_length_1470_cov_14.280208_pilon to pilon.fasta [pilon] Writing NODE_1048_length_1470_cov_4.517420:1-1470 changes to pilon.changes [pilon] Writing updated NODE_1048_length_1470_cov_4.517420_pilon to pilon.fasta [pilon] Writing NODE_1049_length_1468_cov_23.115071:1-1468 changes to pilon.changes [pilon] Writing updated NODE_1049_length_1468_cov_23.115071_pilon to pilon.fasta [pilon] Writing NODE_1050_length_1468_cov_1.260579:1-1468 changes to pilon.changes [pilon] Writing updated NODE_1050_length_1468_cov_1.260579_pilon to pilon.fasta [pilon] Writing NODE_1051_length_1467_cov_35.064636:1-1467 changes to pilon.changes [pilon] Writing updated NODE_1051_length_1467_cov_35.064636_pilon to pilon.fasta [pilon] Writing NODE_1052_length_1466_cov_29.589591:1-1466 changes to pilon.changes [pilon] Writing updated NODE_1052_length_1466_cov_29.589591_pilon to pilon.fasta [pilon] Writing NODE_1053_length_1465_cov_33.021577:1-1465 changes to pilon.changes [pilon] Writing updated NODE_1053_length_1465_cov_33.021577_pilon to pilon.fasta [pilon] Writing NODE_1054_length_1463_cov_17.199702:1-1463 changes to pilon.changes [pilon] Writing updated NODE_1054_length_1463_cov_17.199702_pilon to pilon.fasta [pilon] Writing NODE_1055_length_1463_cov_15.744411:1-1463 changes to pilon.changes [pilon] Writing updated NODE_1055_length_1463_cov_15.744411_pilon to pilon.fasta [pilon] Writing NODE_1056_length_1462_cov_25.595824:1-1462 changes to pilon.changes [pilon] Writing updated NODE_1056_length_1462_cov_25.595824_pilon to pilon.fasta [pilon] Writing NODE_1057_length_1462_cov_17.407159:1-1462 changes to pilon.changes [pilon] Writing updated NODE_1057_length_1462_cov_17.407159_pilon to pilon.fasta [pilon] Writing NODE_1058_length_1461_cov_29.570896:1-1461 changes to pilon.changes [pilon] Writing updated NODE_1058_length_1461_cov_29.570896_pilon to pilon.fasta [pilon] Writing NODE_1059_length_1461_cov_25.423134:1-1461 changes to pilon.changes [pilon] Writing updated NODE_1059_length_1461_cov_25.423134_pilon to pilon.fasta [pilon] Writing NODE_1060_length_1460_cov_10.180732:1-1460 changes to pilon.changes [pilon] Writing updated NODE_1060_length_1460_cov_10.180732_pilon to pilon.fasta [pilon] Writing NODE_1061_length_1460_cov_8.843167:1-1460 changes to pilon.changes [pilon] Writing updated NODE_1061_length_1460_cov_8.843167_pilon to pilon.fasta [pilon] Writing NODE_1062_length_1459_cov_16.345291:1-1459 changes to pilon.changes [pilon] Writing updated NODE_1062_length_1459_cov_16.345291_pilon to pilon.fasta [pilon] Writing NODE_1063_length_1459_cov_9.576981:1-1459 changes to pilon.changes [pilon] Writing updated NODE_1063_length_1459_cov_9.576981_pilon to pilon.fasta [pilon] Writing NODE_1064_length_1459_cov_4.857250:1-1459 changes to pilon.changes [pilon] Writing updated NODE_1064_length_1459_cov_4.857250_pilon to pilon.fasta [pilon] Writing NODE_1065_length_1458_cov_37.643979:1-1458 changes to pilon.changes [pilon] Writing updated NODE_1065_length_1458_cov_37.643979_pilon to pilon.fasta [pilon] Writing NODE_1066_length_1457_cov_26.265719:1-1457 changes to pilon.changes [pilon] Writing updated NODE_1066_length_1457_cov_26.265719_pilon to pilon.fasta [pilon] Writing NODE_1067_length_1456_cov_29.372285:1-1456 changes to pilon.changes [pilon] Writing updated NODE_1067_length_1456_cov_29.372285_pilon to pilon.fasta [pilon] Writing NODE_1068_length_1456_cov_22.659176:1-1456 changes to pilon.changes [pilon] Writing updated NODE_1068_length_1456_cov_22.659176_pilon to pilon.fasta [pilon] Writing NODE_1069_length_1456_cov_17.871161:1-1456 changes to pilon.changes [pilon] Writing updated NODE_1069_length_1456_cov_17.871161_pilon to pilon.fasta [pilon] Writing NODE_1070_length_1456_cov_1.483895:1-1456 changes to pilon.changes [pilon] Writing updated NODE_1070_length_1456_cov_1.483895_pilon to pilon.fasta [pilon] Writing NODE_1071_length_1455_cov_17.686657:1-1455 changes to pilon.changes [pilon] Writing updated NODE_1071_length_1455_cov_17.686657_pilon to pilon.fasta [pilon] Writing NODE_1072_length_1455_cov_14.086957:1-1455 changes to pilon.changes [pilon] Writing updated NODE_1072_length_1455_cov_14.086957_pilon to pilon.fasta [pilon] Writing NODE_1073_length_1455_cov_10.698651:1-1455 changes to pilon.changes [pilon] Writing updated NODE_1073_length_1455_cov_10.698651_pilon to pilon.fasta [pilon] Writing NODE_1074_length_1454_cov_35.200300:1-1454 changes to pilon.changes [pilon] Writing updated NODE_1074_length_1454_cov_35.200300_pilon to pilon.fasta [pilon] Writing NODE_1075_length_1454_cov_17.307577:1-1454 changes to pilon.changes [pilon] Writing updated NODE_1075_length_1454_cov_17.307577_pilon to pilon.fasta [pilon] Writing NODE_1076_length_1454_cov_9.734434:1-1454 changes to pilon.changes [pilon] Writing updated NODE_1076_length_1454_cov_9.734434_pilon to pilon.fasta [pilon] Writing NODE_1077_length_1454_cov_1.711178:1-1454 changes to pilon.changes [pilon] Writing updated NODE_1077_length_1454_cov_1.711178_pilon to pilon.fasta [pilon] Writing NODE_1078_length_1453_cov_34.411411:1-1453 changes to pilon.changes [pilon] Writing updated NODE_1078_length_1453_cov_34.411411_pilon to pilon.fasta [pilon] Writing NODE_1079_length_1452_cov_34.174305:1-1452 changes to pilon.changes [pilon] Writing updated NODE_1079_length_1452_cov_34.174305_pilon to pilon.fasta [pilon] Writing NODE_1080_length_1452_cov_27.450789:1-1452 changes to pilon.changes [pilon] Writing updated NODE_1080_length_1452_cov_27.450789_pilon to pilon.fasta [pilon] Writing NODE_1081_length_1451_cov_30.878947:1-1451 changes to pilon.changes [pilon] Writing updated NODE_1081_length_1451_cov_30.878947_pilon to pilon.fasta [pilon] Writing NODE_1082_length_1450_cov_28.913469:1-1450 changes to pilon.changes [pilon] Writing updated NODE_1082_length_1450_cov_28.913469_pilon to pilon.fasta [pilon] Writing NODE_1083_length_1450_cov_12.570354:1-1450 changes to pilon.changes [pilon] Writing updated NODE_1083_length_1450_cov_12.570354_pilon to pilon.fasta [pilon] Writing NODE_1084_length_1450_cov_3.592175:1-1450 changes to pilon.changes [pilon] Writing updated NODE_1084_length_1450_cov_3.592175_pilon to pilon.fasta [pilon] Writing NODE_1085_length_1450_cov_2.560572:1-1450 changes to pilon.changes [pilon] Writing updated NODE_1085_length_1450_cov_2.560572_pilon to pilon.fasta [pilon] Writing NODE_1086_length_1448_cov_10.813866:1-1448 changes to pilon.changes [pilon] Writing updated NODE_1086_length_1448_cov_10.813866_pilon to pilon.fasta [pilon] Writing NODE_1087_length_1448_cov_1.212509:1-1448 changes to pilon.changes [pilon] Writing updated NODE_1087_length_1448_cov_1.212509_pilon to pilon.fasta [pilon] Writing NODE_1088_length_1447_cov_10.340875:1-1447 changes to pilon.changes [pilon] Writing updated NODE_1088_length_1447_cov_10.340875_pilon to pilon.fasta [pilon] Writing NODE_1089_length_1446_cov_42.261887:1-1446 changes to pilon.changes [pilon] Writing updated NODE_1089_length_1446_cov_42.261887_pilon to pilon.fasta [pilon] Writing NODE_1090_length_1446_cov_20.499623:1-1446 changes to pilon.changes [pilon] Writing updated NODE_1090_length_1446_cov_20.499623_pilon to pilon.fasta [pilon] Writing NODE_1091_length_1446_cov_7.888302:1-1446 changes to pilon.changes [pilon] Writing updated NODE_1091_length_1446_cov_7.888302_pilon to pilon.fasta [pilon] Writing NODE_1092_length_1444_cov_35.136054:1-1444 changes to pilon.changes [pilon] Writing updated NODE_1092_length_1444_cov_35.136054_pilon to pilon.fasta [pilon] Writing NODE_1093_length_1444_cov_23.495843:1-1444 changes to pilon.changes [pilon] Writing updated NODE_1093_length_1444_cov_23.495843_pilon to pilon.fasta [pilon] Writing NODE_1094_length_1443_cov_25.192133:1-1443 changes to pilon.changes [pilon] Writing updated NODE_1094_length_1443_cov_25.192133_pilon to pilon.fasta [pilon] Writing NODE_1095_length_1443_cov_13.866868:1-1443 changes to pilon.changes [pilon] Writing updated NODE_1095_length_1443_cov_13.866868_pilon to pilon.fasta [pilon] Writing NODE_1096_length_1443_cov_9.197428:1-1443 changes to pilon.changes [pilon] Writing updated NODE_1096_length_1443_cov_9.197428_pilon to pilon.fasta [pilon] Writing NODE_1097_length_1442_cov_24.376230:1-1442 changes to pilon.changes [pilon] Writing updated NODE_1097_length_1442_cov_24.376230_pilon to pilon.fasta [pilon] Writing NODE_1098_length_1442_cov_10.416351:1-1442 changes to pilon.changes [pilon] Writing updated NODE_1098_length_1442_cov_10.416351_pilon to pilon.fasta [pilon] Writing NODE_1099_length_1441_cov_18.608333:1-1441 changes to pilon.changes [pilon] Writing updated NODE_1099_length_1441_cov_18.608333_pilon to pilon.fasta [pilon] Writing NODE_1100_length_1440_cov_44.423048:1-1440 changes to pilon.changes [pilon] Writing updated NODE_1100_length_1440_cov_44.423048_pilon to pilon.fasta [pilon] Writing NODE_1101_length_1440_cov_34.269143:1-1440 changes to pilon.changes [pilon] Writing updated NODE_1101_length_1440_cov_34.269143_pilon to pilon.fasta [pilon] Writing NODE_1102_length_1440_cov_17.656558:1-1440 changes to pilon.changes [pilon] Writing updated NODE_1102_length_1440_cov_17.656558_pilon to pilon.fasta [pilon] Writing NODE_1103_length_1439_cov_23.557663:1-1439 changes to pilon.changes [pilon] Writing updated NODE_1103_length_1439_cov_23.557663_pilon to pilon.fasta [pilon] Writing NODE_1104_length_1439_cov_20.275417:1-1439 changes to pilon.changes [pilon] Writing updated NODE_1104_length_1439_cov_20.275417_pilon to pilon.fasta [pilon] Writing NODE_1105_length_1438_cov_14.474563:1-1438 changes to pilon.changes [pilon] Writing updated NODE_1105_length_1438_cov_14.474563_pilon to pilon.fasta [pilon] Writing NODE_1106_length_1438_cov_2.094153:1-1438 changes to pilon.changes [pilon] Writing updated NODE_1106_length_1438_cov_2.094153_pilon to pilon.fasta [pilon] Writing NODE_1107_length_1437_cov_20.102584:1-1437 changes to pilon.changes [pilon] Writing updated NODE_1107_length_1437_cov_20.102584_pilon to pilon.fasta [pilon] Writing NODE_1108_length_1437_cov_1.726444:1-1437 changes to pilon.changes [pilon] Writing updated NODE_1108_length_1437_cov_1.726444_pilon to pilon.fasta [pilon] Writing NODE_1109_length_1436_cov_22.487452:1-1436 changes to pilon.changes [pilon] Writing updated NODE_1109_length_1436_cov_22.487452_pilon to pilon.fasta [pilon] Writing NODE_1110_length_1436_cov_15.076806:1-1436 changes to pilon.changes [pilon] Writing updated NODE_1110_length_1436_cov_15.076806_pilon to pilon.fasta [pilon] Writing NODE_1111_length_1436_cov_9.514829:1-1436 changes to pilon.changes [pilon] Writing updated NODE_1111_length_1436_cov_9.514829_pilon to pilon.fasta [pilon] Writing NODE_1112_length_1436_cov_9.013688:1-1436 changes to pilon.changes [pilon] Writing updated NODE_1112_length_1436_cov_9.013688_pilon to pilon.fasta [pilon] Writing NODE_1113_length_1436_cov_8.315589:1-1436 changes to pilon.changes [pilon] Writing updated NODE_1113_length_1436_cov_8.315589_pilon to pilon.fasta [pilon] Writing NODE_1114_length_1435_cov_18.167428:1-1435 changes to pilon.changes [pilon] Writing updated NODE_1114_length_1435_cov_18.167428_pilon to pilon.fasta [pilon] Writing NODE_1115_length_1432_cov_20.984744:1-1432 changes to pilon.changes [pilon] Writing updated NODE_1115_length_1432_cov_20.984744_pilon to pilon.fasta [pilon] Writing NODE_1116_length_1432_cov_15.940503:1-1432 changes to pilon.changes [pilon] Writing updated NODE_1116_length_1432_cov_15.940503_pilon to pilon.fasta [pilon] Writing NODE_1117_length_1432_cov_3.008391:1-1432 changes to pilon.changes [pilon] Writing updated NODE_1117_length_1432_cov_3.008391_pilon to pilon.fasta [pilon] Writing NODE_1118_length_1431_cov_17.084733:1-1431 changes to pilon.changes [pilon] Writing updated NODE_1118_length_1431_cov_17.084733_pilon to pilon.fasta [pilon] Writing NODE_1119_length_1431_cov_1.175573:1-1431 changes to pilon.changes [pilon] Writing updated NODE_1119_length_1431_cov_1.175573_pilon to pilon.fasta [pilon] Writing NODE_1120_length_1430_cov_20.864782:1-1430 changes to pilon.changes [pilon] Writing updated NODE_1120_length_1430_cov_20.864782_pilon to pilon.fasta [pilon] Writing NODE_1121_length_1429_cov_3.686544:1-1429 changes to pilon.changes [pilon] Writing updated NODE_1121_length_1429_cov_3.686544_pilon to pilon.fasta [pilon] Writing NODE_1122_length_1428_cov_37.924254:1-1428 changes to pilon.changes [pilon] Writing updated NODE_1122_length_1428_cov_37.924254_pilon to pilon.fasta [pilon] Writing NODE_1123_length_1428_cov_34.377965:1-1428 changes to pilon.changes [pilon] Writing updated NODE_1123_length_1428_cov_34.377965_pilon to pilon.fasta [pilon] Writing NODE_1124_length_1428_cov_11.056618:1-1428 changes to pilon.changes [pilon] Writing updated NODE_1124_length_1428_cov_11.056618_pilon to pilon.fasta [pilon] Writing NODE_1125_length_1427_cov_19.274119:1-1427 changes to pilon.changes [pilon] Writing updated NODE_1125_length_1427_cov_19.274119_pilon to pilon.fasta [pilon] Writing NODE_1126_length_1427_cov_1.483155:1-1427 changes to pilon.changes [pilon] Writing updated NODE_1126_length_1427_cov_1.483155_pilon to pilon.fasta [pilon] Writing NODE_1127_length_1426_cov_18.590038:1-1426 changes to pilon.changes [pilon] Writing updated NODE_1127_length_1426_cov_18.590038_pilon to pilon.fasta [pilon] Writing NODE_1128_length_1426_cov_2.162452:1-1426 changes to pilon.changes [pilon] Writing updated NODE_1128_length_1426_cov_2.162452_pilon to pilon.fasta [pilon] Writing NODE_1129_length_1425_cov_27.993098:1-1425 changes to pilon.changes [pilon] Writing updated NODE_1129_length_1425_cov_27.993098_pilon to pilon.fasta [pilon] Writing NODE_1130_length_1425_cov_17.958589:1-1425 changes to pilon.changes [pilon] Writing updated NODE_1130_length_1425_cov_17.958589_pilon to pilon.fasta [pilon] Writing NODE_1131_length_1425_cov_10.419479:1-1425 changes to pilon.changes [pilon] Writing updated NODE_1131_length_1425_cov_10.419479_pilon to pilon.fasta [pilon] Writing NODE_1132_length_1425_cov_2.143405:1-1425 changes to pilon.changes [pilon] Writing updated NODE_1132_length_1425_cov_2.143405_pilon to pilon.fasta [pilon] Writing NODE_1133_length_1424_cov_17.948580:1-1424 changes to pilon.changes [pilon] Writing updated NODE_1133_length_1424_cov_17.948580_pilon to pilon.fasta [pilon] Writing NODE_1134_length_1424_cov_12.122026:1-1424 changes to pilon.changes [pilon] Writing updated NODE_1134_length_1424_cov_12.122026_pilon to pilon.fasta [pilon] Writing NODE_1135_length_1423_cov_35.870200:1-1423 changes to pilon.changes [pilon] Writing updated NODE_1135_length_1423_cov_35.870200_pilon to pilon.fasta [pilon] Writing NODE_1136_length_1423_cov_24.413978:1-1423 changes to pilon.changes [pilon] Writing updated NODE_1136_length_1423_cov_24.413978_pilon to pilon.fasta [pilon] Writing NODE_1137_length_1423_cov_23.403994:1-1423 changes to pilon.changes [pilon] Writing updated NODE_1137_length_1423_cov_23.403994_pilon to pilon.fasta [pilon] Writing NODE_1138_length_1423_cov_15.115975:1-1423 changes to pilon.changes [pilon] Writing updated NODE_1138_length_1423_cov_15.115975_pilon to pilon.fasta [pilon] Writing NODE_1139_length_1423_cov_13.656682:1-1423 changes to pilon.changes [pilon] Writing updated NODE_1139_length_1423_cov_13.656682_pilon to pilon.fasta [pilon] Writing NODE_1140_length_1423_cov_1.523041:1-1423 changes to pilon.changes [pilon] Writing updated NODE_1140_length_1423_cov_1.523041_pilon to pilon.fasta [pilon] Writing NODE_1141_length_1422_cov_29.647194:1-1422 changes to pilon.changes [pilon] Writing updated NODE_1141_length_1422_cov_29.647194_pilon to pilon.fasta [pilon] Writing NODE_1142_length_1422_cov_16.167563:1-1422 changes to pilon.changes [pilon] Writing updated NODE_1142_length_1422_cov_16.167563_pilon to pilon.fasta [pilon] Writing NODE_1143_length_1422_cov_13.245196:1-1422 changes to pilon.changes [pilon] Writing updated NODE_1143_length_1422_cov_13.245196_pilon to pilon.fasta [pilon] Writing NODE_1144_length_1422_cov_2.584166:1-1422 changes to pilon.changes [pilon] Writing updated NODE_1144_length_1422_cov_2.584166_pilon to pilon.fasta [pilon] Writing NODE_1145_length_1421_cov_14.807692:1-1421 changes to pilon.changes [pilon] Writing updated NODE_1145_length_1421_cov_14.807692_pilon to pilon.fasta [pilon] Writing NODE_1146_length_1420_cov_11.384911:1-1420 changes to pilon.changes [pilon] Writing updated NODE_1146_length_1420_cov_11.384911_pilon to pilon.fasta [pilon] Writing NODE_1147_length_1420_cov_1.910701:1-1420 changes to pilon.changes [pilon] Writing updated NODE_1147_length_1420_cov_1.910701_pilon to pilon.fasta [pilon] Writing NODE_1148_length_1418_cov_20.717810:1-1418 changes to pilon.changes [pilon] Writing updated NODE_1148_length_1418_cov_20.717810_pilon to pilon.fasta [pilon] Writing NODE_1149_length_1418_cov_10.424056:1-1418 changes to pilon.changes [pilon] Writing updated NODE_1149_length_1418_cov_10.424056_pilon to pilon.fasta [pilon] Writing NODE_1150_length_1418_cov_1.178874:1-1418 changes to pilon.changes [pilon] Writing updated NODE_1150_length_1418_cov_1.178874_pilon to pilon.fasta [pilon] Writing NODE_1151_length_1417_cov_24.013117:1-1417 changes to pilon.changes [pilon] Writing updated NODE_1151_length_1417_cov_24.013117_pilon to pilon.fasta [pilon] Writing NODE_1152_length_1416_cov_28.587645:1-1416 changes to pilon.changes [pilon] Writing updated NODE_1152_length_1416_cov_28.587645_pilon to pilon.fasta [pilon] Writing NODE_1153_length_1416_cov_11.500386:1-1416 changes to pilon.changes [pilon] Writing updated NODE_1153_length_1416_cov_11.500386_pilon to pilon.fasta [pilon] Writing NODE_1154_length_1415_cov_22.326893:1-1415 changes to pilon.changes [pilon] Writing updated NODE_1154_length_1415_cov_22.326893_pilon to pilon.fasta [pilon] Writing NODE_1155_length_1415_cov_14.080371:1-1415 changes to pilon.changes [pilon] Writing updated NODE_1155_length_1415_cov_14.080371_pilon to pilon.fasta [pilon] Writing NODE_1156_length_1415_cov_12.460587:1-1415 changes to pilon.changes [pilon] Writing updated NODE_1156_length_1415_cov_12.460587_pilon to pilon.fasta [pilon] Writing NODE_1157_length_1415_cov_1.666924:1-1415 changes to pilon.changes [pilon] Writing updated NODE_1157_length_1415_cov_1.666924_pilon to pilon.fasta [pilon] Writing NODE_1158_length_1414_cov_24.521268:1-1414 changes to pilon.changes [pilon] Writing updated NODE_1158_length_1414_cov_24.521268_pilon to pilon.fasta [pilon] Writing NODE_1159_length_1414_cov_17.335654:1-1414 changes to pilon.changes [pilon] Writing updated NODE_1159_length_1414_cov_17.335654_pilon to pilon.fasta [pilon] Writing NODE_1160_length_1414_cov_14.594741:1-1414 changes to pilon.changes [pilon] Writing updated NODE_1160_length_1414_cov_14.594741_pilon to pilon.fasta [pilon] Writing NODE_1161_length_1413_cov_1.606811:1-1413 changes to pilon.changes [pilon] Writing updated NODE_1161_length_1413_cov_1.606811_pilon to pilon.fasta [pilon] Writing NODE_1162_length_1412_cov_21.786987:1-1412 changes to pilon.changes [pilon] Writing updated NODE_1162_length_1412_cov_21.786987_pilon to pilon.fasta [pilon] Writing NODE_1163_length_1412_cov_3.219985:1-1412 changes to pilon.changes [pilon] Writing updated NODE_1163_length_1412_cov_3.219985_pilon to pilon.fasta [pilon] Writing NODE_1164_length_1412_cov_2.082107:1-1412 changes to pilon.changes [pilon] Writing updated NODE_1164_length_1412_cov_2.082107_pilon to pilon.fasta [pilon] Writing NODE_1165_length_1411_cov_19.924806:1-1411 changes to pilon.changes [pilon] Writing updated NODE_1165_length_1411_cov_19.924806_pilon to pilon.fasta [pilon] Writing NODE_1166_length_1411_cov_19.021705:1-1411 changes to pilon.changes [pilon] Writing updated NODE_1166_length_1411_cov_19.021705_pilon to pilon.fasta [pilon] Writing NODE_1167_length_1410_cov_23.579519:1-1410 changes to pilon.changes [pilon] Writing updated NODE_1167_length_1410_cov_23.579519_pilon to pilon.fasta [pilon] Writing NODE_1168_length_1410_cov_21.790535:1-1410 changes to pilon.changes [pilon] Writing updated NODE_1168_length_1410_cov_21.790535_pilon to pilon.fasta [pilon] Writing NODE_1169_length_1410_cov_19.251358:1-1410 changes to pilon.changes [pilon] Writing updated NODE_1169_length_1410_cov_19.251358_pilon to pilon.fasta [pilon] Writing NODE_1170_length_1409_cov_25.760093:1-1409 changes to pilon.changes [pilon] Writing updated NODE_1170_length_1409_cov_25.760093_pilon to pilon.fasta [pilon] Writing NODE_1171_length_1409_cov_17.191770:1-1409 changes to pilon.changes [pilon] Writing updated NODE_1171_length_1409_cov_17.191770_pilon to pilon.fasta [pilon] Writing NODE_1172_length_1409_cov_13.085404:1-1409 changes to pilon.changes [pilon] Writing updated NODE_1172_length_1409_cov_13.085404_pilon to pilon.fasta [pilon] Writing NODE_1173_length_1409_cov_2.249224:1-1409 changes to pilon.changes [pilon] Writing updated NODE_1173_length_1409_cov_2.249224_pilon to pilon.fasta [pilon] Writing NODE_1174_length_1408_cov_15.627040:1-1408 changes to pilon.changes [pilon] Writing updated NODE_1174_length_1408_cov_15.627040_pilon to pilon.fasta [pilon] Writing NODE_1175_length_1408_cov_15.536952:1-1408 changes to pilon.changes [pilon] Writing updated NODE_1175_length_1408_cov_15.536952_pilon to pilon.fasta [pilon] Writing NODE_1176_length_1407_cov_35.504666:1-1407 changes to pilon.changes [pilon] Writing updated NODE_1176_length_1407_cov_35.504666_pilon to pilon.fasta [pilon] Writing NODE_1177_length_1407_cov_26.031104:1-1407 changes to pilon.changes [pilon] Writing updated NODE_1177_length_1407_cov_26.031104_pilon to pilon.fasta [pilon] Writing NODE_1178_length_1407_cov_19.000778:1-1407 changes to pilon.changes [pilon] Writing updated NODE_1178_length_1407_cov_19.000778_pilon to pilon.fasta [pilon] Writing NODE_1179_length_1407_cov_14.640747:1-1407 changes to pilon.changes [pilon] Writing updated NODE_1179_length_1407_cov_14.640747_pilon to pilon.fasta [pilon] Writing NODE_1180_length_1407_cov_10.382582:1-1407 changes to pilon.changes [pilon] Writing updated NODE_1180_length_1407_cov_10.382582_pilon to pilon.fasta [pilon] Writing NODE_1181_length_1407_cov_3.315708:1-1407 changes to pilon.changes [pilon] Writing updated NODE_1181_length_1407_cov_3.315708_pilon to pilon.fasta [pilon] Writing NODE_1182_length_1406_cov_27.087938:1-1406 changes to pilon.changes [pilon] Writing updated NODE_1182_length_1406_cov_27.087938_pilon to pilon.fasta [pilon] Writing NODE_1183_length_1406_cov_19.235019:1-1406 changes to pilon.changes [pilon] Writing updated NODE_1183_length_1406_cov_19.235019_pilon to pilon.fasta [pilon] Writing NODE_1184_length_1406_cov_8.986770:1-1406 changes to pilon.changes [pilon] Writing updated NODE_1184_length_1406_cov_8.986770_pilon to pilon.fasta [pilon] Writing NODE_1185_length_1405_cov_29.504673:1-1405 changes to pilon.changes [pilon] Writing updated NODE_1185_length_1405_cov_29.504673_pilon to pilon.fasta [pilon] Writing NODE_1186_length_1403_cov_34.535101:1-1403 changes to pilon.changes [pilon] Writing updated NODE_1186_length_1403_cov_34.535101_pilon to pilon.fasta [pilon] Writing NODE_1187_length_1403_cov_6.152886:1-1403 changes to pilon.changes [pilon] Writing updated NODE_1187_length_1403_cov_6.152886_pilon to pilon.fasta [pilon] Writing NODE_1188_length_1403_cov_1.235569:1-1403 changes to pilon.changes [pilon] Writing updated NODE_1188_length_1403_cov_1.235569_pilon to pilon.fasta [pilon] Writing NODE_1189_length_1402_cov_4.219360:1-1402 changes to pilon.changes [pilon] Writing updated NODE_1189_length_1402_cov_4.219360_pilon to pilon.fasta [pilon] Writing NODE_1190_length_1402_cov_3.443404:1-1402 changes to pilon.changes [pilon] Writing updated NODE_1190_length_1402_cov_3.443404_pilon to pilon.fasta [pilon] Writing NODE_1191_length_1401_cov_17.550000:1-1401 changes to pilon.changes [pilon] Writing updated NODE_1191_length_1401_cov_17.550000_pilon to pilon.fasta [pilon] Writing NODE_1192_length_1401_cov_15.375000:1-1401 changes to pilon.changes [pilon] Writing updated NODE_1192_length_1401_cov_15.375000_pilon to pilon.fasta [pilon] Writing NODE_1193_length_1401_cov_10.249219:1-1401 changes to pilon.changes [pilon] Writing updated NODE_1193_length_1401_cov_10.249219_pilon to pilon.fasta [pilon] Writing NODE_1194_length_1401_cov_7.741406:1-1401 changes to pilon.changes [pilon] Writing updated NODE_1194_length_1401_cov_7.741406_pilon to pilon.fasta [pilon] Writing NODE_1195_length_1400_cov_13.493354:1-1400 changes to pilon.changes [pilon] Writing updated NODE_1195_length_1400_cov_13.493354_pilon to pilon.fasta [pilon] Writing NODE_1196_length_1400_cov_1.178264:1-1400 changes to pilon.changes [pilon] Writing updated NODE_1196_length_1400_cov_1.178264_pilon to pilon.fasta [pilon] Writing NODE_1197_length_1399_cov_18.615806:1-1399 changes to pilon.changes [pilon] Writing updated NODE_1197_length_1399_cov_18.615806_pilon to pilon.fasta [pilon] Writing NODE_1198_length_1399_cov_1.621283:1-1399 changes to pilon.changes [pilon] Writing updated NODE_1198_length_1399_cov_1.621283_pilon to pilon.fasta [pilon] Writing NODE_1199_length_1398_cov_42.302271:1-1398 changes to pilon.changes [pilon] Writing updated NODE_1199_length_1398_cov_42.302271_pilon to pilon.fasta [pilon] Writing NODE_1200_length_1398_cov_24.740016:1-1398 changes to pilon.changes [pilon] Writing updated NODE_1200_length_1398_cov_24.740016_pilon to pilon.fasta [pilon] Writing NODE_1201_length_1397_cov_16.555643:1-1397 changes to pilon.changes [pilon] Writing updated NODE_1201_length_1397_cov_16.555643_pilon to pilon.fasta [pilon] Writing NODE_1202_length_1397_cov_3.409875:1-1397 changes to pilon.changes [pilon] Writing updated NODE_1202_length_1397_cov_3.409875_pilon to pilon.fasta [pilon] Writing NODE_1203_length_1394_cov_33.979576:1-1394 changes to pilon.changes [pilon] Writing updated NODE_1203_length_1394_cov_33.979576_pilon to pilon.fasta [pilon] Writing NODE_1204_length_1393_cov_31.854560:1-1393 changes to pilon.changes [pilon] Writing updated NODE_1204_length_1393_cov_31.854560_pilon to pilon.fasta [pilon] Writing NODE_1205_length_1393_cov_9.579403:1-1393 changes to pilon.changes [pilon] Writing updated NODE_1205_length_1393_cov_9.579403_pilon to pilon.fasta [pilon] Writing NODE_1206_length_1393_cov_8.548742:1-1393 changes to pilon.changes [pilon] Writing updated NODE_1206_length_1393_cov_8.548742_pilon to pilon.fasta [pilon] Writing NODE_1207_length_1390_cov_21.151300:1-1390 changes to pilon.changes [pilon] Writing updated NODE_1207_length_1390_cov_21.151300_pilon to pilon.fasta [pilon] Writing NODE_1208_length_1389_cov_27.404574:1-1389 changes to pilon.changes [pilon] Writing updated NODE_1208_length_1389_cov_27.404574_pilon to pilon.fasta [pilon] Writing NODE_1209_length_1389_cov_21.611199:1-1389 changes to pilon.changes [pilon] Writing updated NODE_1209_length_1389_cov_21.611199_pilon to pilon.fasta [pilon] Writing NODE_1210_length_1388_cov_1.310182:1-1388 changes to pilon.changes [pilon] Writing updated NODE_1210_length_1388_cov_1.310182_pilon to pilon.fasta [pilon] Writing NODE_1211_length_1387_cov_30.145340:1-1387 changes to pilon.changes [pilon] Writing updated NODE_1211_length_1387_cov_30.145340_pilon to pilon.fasta [pilon] Writing NODE_1212_length_1385_cov_12.052215:1-1385 changes to pilon.changes [pilon] Writing updated NODE_1212_length_1385_cov_12.052215_pilon to pilon.fasta [pilon] Writing NODE_1213_length_1385_cov_8.645570:1-1385 changes to pilon.changes [pilon] Writing updated NODE_1213_length_1385_cov_8.645570_pilon to pilon.fasta [pilon] Writing NODE_1214_length_1384_cov_36.432304:1-1384 changes to pilon.changes [pilon] Writing updated NODE_1214_length_1384_cov_36.432304_pilon to pilon.fasta [pilon] Writing NODE_1215_length_1384_cov_16.099762:1-1384 changes to pilon.changes [pilon] Writing updated NODE_1215_length_1384_cov_16.099762_pilon to pilon.fasta [pilon] Writing NODE_1216_length_1384_cov_1.898654:1-1384 changes to pilon.changes [pilon] Writing updated NODE_1216_length_1384_cov_1.898654_pilon to pilon.fasta [pilon] Writing NODE_1217_length_1383_cov_20.179873:1-1383 changes to pilon.changes [pilon] Writing updated NODE_1217_length_1383_cov_20.179873_pilon to pilon.fasta [pilon] Writing NODE_1218_length_1381_cov_6.291270:1-1381 changes to pilon.changes [pilon] Writing updated NODE_1218_length_1381_cov_6.291270_pilon to pilon.fasta [pilon] Writing NODE_1219_length_1380_cov_20.325655:1-1380 changes to pilon.changes [pilon] Writing updated NODE_1219_length_1380_cov_20.325655_pilon to pilon.fasta [pilon] Writing NODE_1220_length_1380_cov_19.899921:1-1380 changes to pilon.changes [pilon] Writing updated NODE_1220_length_1380_cov_19.899921_pilon to pilon.fasta [pilon] Writing NODE_1221_length_1380_cov_18.859412:1-1380 changes to pilon.changes [pilon] Writing updated NODE_1221_length_1380_cov_18.859412_pilon to pilon.fasta [pilon] Writing NODE_1222_length_1379_cov_1.750397:1-1379 changes to pilon.changes [pilon] Writing updated NODE_1222_length_1379_cov_1.750397_pilon to pilon.fasta [pilon] Writing NODE_1223_length_1378_cov_32.102625:1-1378 changes to pilon.changes [pilon] Writing updated NODE_1223_length_1378_cov_32.102625_pilon to pilon.fasta [pilon] Writing NODE_1224_length_1378_cov_31.036595:1-1378 changes to pilon.changes [pilon] Writing updated NODE_1224_length_1378_cov_31.036595_pilon to pilon.fasta [pilon] Writing NODE_1225_length_1378_cov_13.968178:1-1378 changes to pilon.changes [pilon] Writing updated NODE_1225_length_1378_cov_13.968178_pilon to pilon.fasta [pilon] Writing NODE_1226_length_1378_cov_4.041368:1-1378 changes to pilon.changes [pilon] Writing updated NODE_1226_length_1378_cov_4.041368_pilon to pilon.fasta [pilon] Writing NODE_1227_length_1376_cov_5.491633:1-1376 changes to pilon.changes [pilon] Writing updated NODE_1227_length_1376_cov_5.491633_pilon to pilon.fasta [pilon] Writing NODE_1228_length_1375_cov_8.806220:1-1375 changes to pilon.changes [pilon] Writing updated NODE_1228_length_1375_cov_8.806220_pilon to pilon.fasta [pilon] Writing NODE_1229_length_1374_cov_10.553073:1-1374 changes to pilon.changes [pilon] Writing updated NODE_1229_length_1374_cov_10.553073_pilon to pilon.fasta [pilon] Writing NODE_1230_length_1373_cov_29.881789:1-1373 changes to pilon.changes [pilon] Writing updated NODE_1230_length_1373_cov_29.881789_pilon to pilon.fasta [pilon] Writing NODE_1231_length_1373_cov_17.801118:1-1373 changes to pilon.changes [pilon] Writing updated NODE_1231_length_1373_cov_17.801118_pilon to pilon.fasta [pilon] Writing NODE_1232_length_1373_cov_14.418530:1-1373 changes to pilon.changes [pilon] Writing updated NODE_1232_length_1373_cov_14.418530_pilon to pilon.fasta [pilon] Writing NODE_1233_length_1372_cov_12.067946:1-1372 changes to pilon.changes [pilon] Writing updated NODE_1233_length_1372_cov_12.067946_pilon to pilon.fasta [pilon] Writing NODE_1234_length_1372_cov_11.457234:1-1372 changes to pilon.changes [pilon] Writing updated NODE_1234_length_1372_cov_11.457234_pilon to pilon.fasta [pilon] Writing NODE_1235_length_1372_cov_2.860112:1-1372 changes to pilon.changes [pilon] Writing updated NODE_1235_length_1372_cov_2.860112_pilon to pilon.fasta [pilon] Writing NODE_1236_length_1372_cov_1.889688:1-1372 changes to pilon.changes [pilon] Writing updated NODE_1236_length_1372_cov_1.889688_pilon to pilon.fasta [pilon] Writing NODE_1237_length_1372_cov_1.777778:1-1372 changes to pilon.changes [pilon] Writing updated NODE_1237_length_1372_cov_1.777778_pilon to pilon.fasta [pilon] Writing NODE_1238_length_1370_cov_22.738991:1-1370 changes to pilon.changes [pilon] Writing updated NODE_1238_length_1370_cov_22.738991_pilon to pilon.fasta [pilon] Writing NODE_1239_length_1370_cov_4.364291:1-1370 changes to pilon.changes [pilon] Writing updated NODE_1239_length_1370_cov_4.364291_pilon to pilon.fasta [pilon] Writing NODE_1240_length_1370_cov_3.060849:1-1370 changes to pilon.changes [pilon] Writing updated NODE_1240_length_1370_cov_3.060849_pilon to pilon.fasta [pilon] Writing NODE_1241_length_1369_cov_26.016026:1-1369 changes to pilon.changes [pilon] Writing updated NODE_1241_length_1369_cov_26.016026_pilon to pilon.fasta [pilon] Writing NODE_1242_length_1369_cov_22.947917:1-1369 changes to pilon.changes [pilon] Writing updated NODE_1242_length_1369_cov_22.947917_pilon to pilon.fasta [pilon] Writing NODE_1243_length_1368_cov_36.619086:1-1368 changes to pilon.changes [pilon] Writing updated NODE_1243_length_1368_cov_36.619086_pilon to pilon.fasta [pilon] Writing NODE_1244_length_1368_cov_16.075381:1-1368 changes to pilon.changes [pilon] Writing updated NODE_1244_length_1368_cov_16.075381_pilon to pilon.fasta [pilon] Writing NODE_1245_length_1368_cov_6.553328:1-1368 changes to pilon.changes [pilon] Writing updated NODE_1245_length_1368_cov_6.553328_pilon to pilon.fasta [pilon] Writing NODE_1246_length_1367_cov_37.050562:1-1367 changes to pilon.changes [pilon] Writing updated NODE_1246_length_1367_cov_37.050562_pilon to pilon.fasta [pilon] Writing NODE_1247_length_1367_cov_25.476726:1-1367 changes to pilon.changes [pilon] Writing updated NODE_1247_length_1367_cov_25.476726_pilon to pilon.fasta [pilon] Writing NODE_1248_length_1367_cov_2.862761:1-1367 changes to pilon.changes [pilon] Writing updated NODE_1248_length_1367_cov_2.862761_pilon to pilon.fasta [pilon] Writing NODE_1249_length_1367_cov_1.491974:1-1367 changes to pilon.changes [pilon] Writing updated NODE_1249_length_1367_cov_1.491974_pilon to pilon.fasta [pilon] Writing NODE_1250_length_1366_cov_22.224096:1-1366 changes to pilon.changes [pilon] Writing updated NODE_1250_length_1366_cov_22.224096_pilon to pilon.fasta [pilon] Writing NODE_1251_length_1364_cov_13.033789:1-1364 changes to pilon.changes [pilon] Writing updated NODE_1251_length_1364_cov_13.033789_pilon to pilon.fasta [pilon] Writing NODE_1252_length_1364_cov_3.181818:1-1364 changes to pilon.changes [pilon] Writing updated NODE_1252_length_1364_cov_3.181818_pilon to pilon.fasta [pilon] Writing NODE_1253_length_1363_cov_19.435588:1-1363 changes to pilon.changes [pilon] Writing updated NODE_1253_length_1363_cov_19.435588_pilon to pilon.fasta [pilon] Writing NODE_1254_length_1363_cov_7.442834:1-1363 changes to pilon.changes [pilon] Writing updated NODE_1254_length_1363_cov_7.442834_pilon to pilon.fasta [pilon] Writing NODE_1255_length_1362_cov_10.897663:1-1362 changes to pilon.changes [pilon] Writing updated NODE_1255_length_1362_cov_10.897663_pilon to pilon.fasta [pilon] Writing NODE_1256_length_1360_cov_35.378531:1-1360 changes to pilon.changes [pilon] Writing updated NODE_1256_length_1360_cov_35.378531_pilon to pilon.fasta [pilon] Writing NODE_1257_length_1360_cov_17.206618:1-1360 changes to pilon.changes [pilon] Writing updated NODE_1257_length_1360_cov_17.206618_pilon to pilon.fasta [pilon] Writing NODE_1258_length_1359_cov_21.138126:1-1359 changes to pilon.changes [pilon] Writing updated NODE_1258_length_1359_cov_21.138126_pilon to pilon.fasta [pilon] Writing NODE_1259_length_1359_cov_18.506462:1-1359 changes to pilon.changes [pilon] Writing updated NODE_1259_length_1359_cov_18.506462_pilon to pilon.fasta [pilon] Writing NODE_1260_length_1359_cov_12.731826:1-1359 changes to pilon.changes [pilon] Writing updated NODE_1260_length_1359_cov_12.731826_pilon to pilon.fasta [pilon] Writing NODE_1261_length_1358_cov_3.337106:1-1358 changes to pilon.changes [pilon] Writing updated NODE_1261_length_1358_cov_3.337106_pilon to pilon.fasta [pilon] Writing NODE_1262_length_1357_cov_23.876214:1-1357 changes to pilon.changes [pilon] Writing updated NODE_1262_length_1357_cov_23.876214_pilon to pilon.fasta [pilon] Writing NODE_1263_length_1357_cov_23.701456:1-1357 changes to pilon.changes [pilon] Writing updated NODE_1263_length_1357_cov_23.701456_pilon to pilon.fasta [pilon] Writing NODE_1264_length_1357_cov_15.171521:1-1357 changes to pilon.changes [pilon] Writing updated NODE_1264_length_1357_cov_15.171521_pilon to pilon.fasta [pilon] Writing NODE_1265_length_1356_cov_17.018623:1-1356 changes to pilon.changes [pilon] Writing updated NODE_1265_length_1356_cov_17.018623_pilon to pilon.fasta [pilon] Writing NODE_1266_length_1356_cov_13.334413:1-1356 changes to pilon.changes [pilon] Writing updated NODE_1266_length_1356_cov_13.334413_pilon to pilon.fasta [pilon] Writing NODE_1267_length_1355_cov_47.867909:1-1355 changes to pilon.changes [pilon] Writing updated NODE_1267_length_1355_cov_47.867909_pilon to pilon.fasta [pilon] Writing NODE_1268_length_1355_cov_26.850891:1-1355 changes to pilon.changes [pilon] Writing updated NODE_1268_length_1355_cov_26.850891_pilon to pilon.fasta [pilon] Writing NODE_1269_length_1355_cov_2.355754:1-1355 changes to pilon.changes [pilon] Writing updated NODE_1269_length_1355_cov_2.355754_pilon to pilon.fasta [pilon] Writing NODE_1270_length_1354_cov_11.841849:1-1354 changes to pilon.changes [pilon] Writing updated NODE_1270_length_1354_cov_11.841849_pilon to pilon.fasta [pilon] Writing NODE_1271_length_1354_cov_1.478508:1-1354 changes to pilon.changes [pilon] Writing updated NODE_1271_length_1354_cov_1.478508_pilon to pilon.fasta [pilon] Writing NODE_1272_length_1352_cov_26.177092:1-1352 changes to pilon.changes [pilon] Writing updated NODE_1272_length_1352_cov_26.177092_pilon to pilon.fasta [pilon] Writing NODE_1273_length_1352_cov_24.478473:1-1352 changes to pilon.changes [pilon] Writing updated NODE_1273_length_1352_cov_24.478473_pilon to pilon.fasta [pilon] Writing NODE_1274_length_1352_cov_20.991877:1-1352 changes to pilon.changes [pilon] Writing updated NODE_1274_length_1352_cov_20.991877_pilon to pilon.fasta [pilon] Writing NODE_1275_length_1352_cov_15.151097:1-1352 changes to pilon.changes [pilon] Writing updated NODE_1275_length_1352_cov_15.151097_pilon to pilon.fasta [pilon] Writing NODE_1276_length_1352_cov_1.359870:1-1352 changes to pilon.changes [pilon] Writing updated NODE_1276_length_1352_cov_1.359870_pilon to pilon.fasta [pilon] Writing NODE_1277_length_1351_cov_13.576423:1-1351 changes to pilon.changes [pilon] Writing updated NODE_1277_length_1351_cov_13.576423_pilon to pilon.fasta [pilon] Writing NODE_1278_length_1351_cov_3.163415:1-1351 changes to pilon.changes [pilon] Writing updated NODE_1278_length_1351_cov_3.163415_pilon to pilon.fasta [pilon] Writing NODE_1279_length_1350_cov_20.428804:1-1350 changes to pilon.changes [pilon] Writing updated NODE_1279_length_1350_cov_20.428804_pilon to pilon.fasta [pilon] Writing NODE_1280_length_1350_cov_13.634662:1-1350 changes to pilon.changes [pilon] Writing updated NODE_1280_length_1350_cov_13.634662_pilon to pilon.fasta [pilon] Writing NODE_1281_length_1348_cov_11.723716:1-1348 changes to pilon.changes [pilon] Writing updated NODE_1281_length_1348_cov_11.723716_pilon to pilon.fasta [pilon] Writing NODE_1282_length_1348_cov_3.494703:1-1348 changes to pilon.changes [pilon] Writing updated NODE_1282_length_1348_cov_3.494703_pilon to pilon.fasta [pilon] Writing NODE_1283_length_1348_cov_1.194784:1-1348 changes to pilon.changes [pilon] Writing updated NODE_1283_length_1348_cov_1.194784_pilon to pilon.fasta [pilon] Writing NODE_1284_length_1347_cov_3.644372:1-1347 changes to pilon.changes [pilon] Writing updated NODE_1284_length_1347_cov_3.644372_pilon to pilon.fasta [pilon] Writing NODE_1285_length_1347_cov_2.453507:1-1347 changes to pilon.changes [pilon] Writing updated NODE_1285_length_1347_cov_2.453507_pilon to pilon.fasta [pilon] Writing NODE_1286_length_1346_cov_39.636735:1-1346 changes to pilon.changes [pilon] Writing updated NODE_1286_length_1346_cov_39.636735_pilon to pilon.fasta [pilon] Writing NODE_1287_length_1346_cov_7.021224:1-1346 changes to pilon.changes [pilon] Writing updated NODE_1287_length_1346_cov_7.021224_pilon to pilon.fasta [pilon] Writing NODE_1288_length_1345_cov_16.852124:1-1345 changes to pilon.changes [pilon] Writing updated NODE_1288_length_1345_cov_16.852124_pilon to pilon.fasta [pilon] Writing NODE_1289_length_1345_cov_16.355392:1-1345 changes to pilon.changes [pilon] Writing updated NODE_1289_length_1345_cov_16.355392_pilon to pilon.fasta [pilon] Writing NODE_1290_length_1345_cov_15.834150:1-1345 changes to pilon.changes [pilon] Writing updated NODE_1290_length_1345_cov_15.834150_pilon to pilon.fasta [pilon] Writing NODE_1291_length_1344_cov_13.142273:1-1344 changes to pilon.changes [pilon] Writing updated NODE_1291_length_1344_cov_13.142273_pilon to pilon.fasta [pilon] Writing NODE_1292_length_1344_cov_2.761243:1-1344 changes to pilon.changes [pilon] Writing updated NODE_1292_length_1344_cov_2.761243_pilon to pilon.fasta [pilon] Writing NODE_1293_length_1344_cov_1.952576:1-1344 changes to pilon.changes [pilon] Writing updated NODE_1293_length_1344_cov_1.952576_pilon to pilon.fasta [pilon] Writing NODE_1294_length_1343_cov_4.833879:1-1343 changes to pilon.changes [pilon] Writing updated NODE_1294_length_1343_cov_4.833879_pilon to pilon.fasta [pilon] Writing NODE_1295_length_1343_cov_3.021277:1-1343 changes to pilon.changes [pilon] Writing updated NODE_1295_length_1343_cov_3.021277_pilon to pilon.fasta [pilon] Writing NODE_1296_length_1342_cov_4.847666:1-1342 changes to pilon.changes [pilon] Writing updated NODE_1296_length_1342_cov_4.847666_pilon to pilon.fasta [pilon] Writing NODE_1297_length_1342_cov_1.731368:1-1342 changes to pilon.changes [pilon] Writing updated NODE_1297_length_1342_cov_1.731368_pilon to pilon.fasta [pilon] Writing NODE_1298_length_1341_cov_24.997541:1-1341 changes to pilon.changes [pilon] Writing updated NODE_1298_length_1341_cov_24.997541_pilon to pilon.fasta [pilon] Writing NODE_1299_length_1341_cov_18.363934:1-1341 changes to pilon.changes [pilon] Writing updated NODE_1299_length_1341_cov_18.363934_pilon to pilon.fasta [pilon] Writing NODE_1300_length_1341_cov_14.963115:1-1341 changes to pilon.changes [pilon] Writing updated NODE_1300_length_1341_cov_14.963115_pilon to pilon.fasta [pilon] Writing NODE_1301_length_1341_cov_12.021311:1-1341 changes to pilon.changes [pilon] Writing updated NODE_1301_length_1341_cov_12.021311_pilon to pilon.fasta [pilon] Writing NODE_1302_length_1341_cov_10.436885:1-1341 changes to pilon.changes [pilon] Writing updated NODE_1302_length_1341_cov_10.436885_pilon to pilon.fasta [pilon] Writing NODE_1303_length_1340_cov_44.550451:1-1340 changes to pilon.changes [pilon] Writing updated NODE_1303_length_1340_cov_44.550451_pilon to pilon.fasta [pilon] Writing NODE_1304_length_1340_cov_2.058244:1-1340 changes to pilon.changes [pilon] Writing updated NODE_1304_length_1340_cov_2.058244_pilon to pilon.fasta [pilon] Writing NODE_1305_length_1339_cov_3.284893:1-1339 changes to pilon.changes [pilon] Writing updated NODE_1305_length_1339_cov_3.284893_pilon to pilon.fasta [pilon] Writing NODE_1306_length_1338_cov_22.792112:1-1338 changes to pilon.changes [pilon] Writing updated NODE_1306_length_1338_cov_22.792112_pilon to pilon.fasta [pilon] Writing NODE_1307_length_1337_cov_14.006579:1-1337 changes to pilon.changes [pilon] Writing updated NODE_1307_length_1337_cov_14.006579_pilon to pilon.fasta [pilon] Writing NODE_1308_length_1337_cov_10.499178:1-1337 changes to pilon.changes [pilon] Writing updated NODE_1308_length_1337_cov_10.499178_pilon to pilon.fasta [pilon] Writing NODE_1309_length_1337_cov_4.679276:1-1337 changes to pilon.changes [pilon] Writing updated NODE_1309_length_1337_cov_4.679276_pilon to pilon.fasta [pilon] Writing NODE_1310_length_1336_cov_13.589300:1-1336 changes to pilon.changes [pilon] Writing updated NODE_1310_length_1336_cov_13.589300_pilon to pilon.fasta [pilon] Writing NODE_1311_length_1336_cov_2.540741:1-1336 changes to pilon.changes [pilon] Writing updated NODE_1311_length_1336_cov_2.540741_pilon to pilon.fasta [pilon] Writing NODE_1312_length_1335_cov_22.188633:1-1335 changes to pilon.changes [pilon] Writing updated NODE_1312_length_1335_cov_22.188633_pilon to pilon.fasta [pilon] Writing NODE_1313_length_1334_cov_14.089035:1-1334 changes to pilon.changes [pilon] Writing updated NODE_1313_length_1334_cov_14.089035_pilon to pilon.fasta [pilon] Writing NODE_1314_length_1334_cov_3.999176:1-1334 changes to pilon.changes [pilon] Writing updated NODE_1314_length_1334_cov_3.999176_pilon to pilon.fasta [pilon] Writing NODE_1315_length_1333_cov_27.200495:1-1333 changes to pilon.changes [pilon] Writing updated NODE_1315_length_1333_cov_27.200495_pilon to pilon.fasta [pilon] Writing NODE_1316_length_1333_cov_25.274752:1-1333 changes to pilon.changes [pilon] Writing updated NODE_1316_length_1333_cov_25.274752_pilon to pilon.fasta [pilon] Writing NODE_1317_length_1333_cov_2.816832:1-1333 changes to pilon.changes [pilon] Writing updated NODE_1317_length_1333_cov_2.816832_pilon to pilon.fasta [pilon] Writing NODE_1318_length_1333_cov_1.670792:1-1333 changes to pilon.changes [pilon] Writing updated NODE_1318_length_1333_cov_1.670792_pilon to pilon.fasta [pilon] Writing NODE_1319_length_1333_cov_1.574257:1-1333 changes to pilon.changes [pilon] Writing updated NODE_1319_length_1333_cov_1.574257_pilon to pilon.fasta [pilon] Writing NODE_1320_length_1333_cov_1.507426:1-1333 changes to pilon.changes [pilon] Writing updated NODE_1320_length_1333_cov_1.507426_pilon to pilon.fasta [pilon] Writing NODE_1321_length_1332_cov_13.908340:1-1332 changes to pilon.changes [pilon] Writing updated NODE_1321_length_1332_cov_13.908340_pilon to pilon.fasta [pilon] Writing NODE_1322_length_1332_cov_2.667217:1-1332 changes to pilon.changes [pilon] Writing updated NODE_1322_length_1332_cov_2.667217_pilon to pilon.fasta [pilon] Writing NODE_1323_length_1332_cov_2.658960:1-1332 changes to pilon.changes [pilon] Writing updated NODE_1323_length_1332_cov_2.658960_pilon to pilon.fasta [pilon] Writing NODE_1324_length_1332_cov_2.241949:1-1332 changes to pilon.changes [pilon] Writing updated NODE_1324_length_1332_cov_2.241949_pilon to pilon.fasta [pilon] Writing NODE_1325_length_1331_cov_37.225620:1-1331 changes to pilon.changes [pilon] Writing updated NODE_1325_length_1331_cov_37.225620_pilon to pilon.fasta [pilon] Writing NODE_1326_length_1331_cov_3.566942:1-1331 changes to pilon.changes [pilon] Writing updated NODE_1326_length_1331_cov_3.566942_pilon to pilon.fasta [pilon] Writing NODE_1327_length_1330_cov_7.022333:1-1330 changes to pilon.changes [pilon] Writing updated NODE_1327_length_1330_cov_7.022333_pilon to pilon.fasta [pilon] Writing NODE_1328_length_1329_cov_30.301325:1-1329 changes to pilon.changes [pilon] Writing updated NODE_1328_length_1329_cov_30.301325_pilon to pilon.fasta [pilon] Writing NODE_1329_length_1329_cov_17.485927:1-1329 changes to pilon.changes [pilon] Writing updated NODE_1329_length_1329_cov_17.485927_pilon to pilon.fasta [pilon] Writing NODE_1330_length_1329_cov_11.472682:1-1329 changes to pilon.changes [pilon] Writing updated NODE_1330_length_1329_cov_11.472682_pilon to pilon.fasta [pilon] Writing NODE_1331_length_1328_cov_24.437448:1-1328 changes to pilon.changes [pilon] Writing updated NODE_1331_length_1328_cov_24.437448_pilon to pilon.fasta [pilon] Writing NODE_1332_length_1328_cov_6.426678:1-1328 changes to pilon.changes [pilon] Writing updated NODE_1332_length_1328_cov_6.426678_pilon to pilon.fasta [pilon] Writing NODE_1333_length_1328_cov_0.954432:1-1328 changes to pilon.changes [pilon] Writing updated NODE_1333_length_1328_cov_0.954432_pilon to pilon.fasta [pilon] Writing NODE_1334_length_1327_cov_24.187396:1-1327 changes to pilon.changes [pilon] Writing updated NODE_1334_length_1327_cov_24.187396_pilon to pilon.fasta [pilon] Writing NODE_1335_length_1327_cov_21.642620:1-1327 changes to pilon.changes [pilon] Writing updated NODE_1335_length_1327_cov_21.642620_pilon to pilon.fasta [pilon] Writing NODE_1336_length_1327_cov_19.399668:1-1327 changes to pilon.changes [pilon] Writing updated NODE_1336_length_1327_cov_19.399668_pilon to pilon.fasta [pilon] Writing NODE_1337_length_1327_cov_18.545605:1-1327 changes to pilon.changes [pilon] Writing updated NODE_1337_length_1327_cov_18.545605_pilon to pilon.fasta [pilon] Writing NODE_1338_length_1327_cov_9.172471:1-1327 changes to pilon.changes [pilon] Writing updated NODE_1338_length_1327_cov_9.172471_pilon to pilon.fasta [pilon] Writing NODE_1339_length_1325_cov_33.758306:1-1325 changes to pilon.changes [pilon] Writing updated NODE_1339_length_1325_cov_33.758306_pilon to pilon.fasta [pilon] Writing NODE_1340_length_1325_cov_20.978405:1-1325 changes to pilon.changes [pilon] Writing updated NODE_1340_length_1325_cov_20.978405_pilon to pilon.fasta [pilon] Writing NODE_1341_length_1324_cov_41.421446:1-1324 changes to pilon.changes [pilon] Writing updated NODE_1341_length_1324_cov_41.421446_pilon to pilon.fasta [pilon] Writing NODE_1342_length_1324_cov_11.333333:1-1324 changes to pilon.changes [pilon] Writing updated NODE_1342_length_1324_cov_11.333333_pilon to pilon.fasta [pilon] Writing NODE_1343_length_1323_cov_15.075707:1-1323 changes to pilon.changes [pilon] Writing updated NODE_1343_length_1323_cov_15.075707_pilon to pilon.fasta [pilon] Writing NODE_1344_length_1323_cov_3.363561:1-1323 changes to pilon.changes [pilon] Writing updated NODE_1344_length_1323_cov_3.363561_pilon to pilon.fasta [pilon] Writing NODE_1345_length_1322_cov_28.330558:1-1322 changes to pilon.changes [pilon] Writing updated NODE_1345_length_1322_cov_28.330558_pilon to pilon.fasta [pilon] Writing NODE_1346_length_1322_cov_25.445462:1-1322 changes to pilon.changes [pilon] Writing updated NODE_1346_length_1322_cov_25.445462_pilon to pilon.fasta [pilon] Writing NODE_1347_length_1322_cov_22.618651:1-1322 changes to pilon.changes [pilon] Writing updated NODE_1347_length_1322_cov_22.618651_pilon to pilon.fasta [pilon] Writing NODE_1348_length_1321_cov_2.091667:1-1321 changes to pilon.changes [pilon] Writing updated NODE_1348_length_1321_cov_2.091667_pilon to pilon.fasta [pilon] Writing NODE_1349_length_1320_cov_13.269391:1-1320 changes to pilon.changes [pilon] Writing updated NODE_1349_length_1320_cov_13.269391_pilon to pilon.fasta [pilon] Writing NODE_1350_length_1319_cov_26.443239:1-1319 changes to pilon.changes [pilon] Writing updated NODE_1350_length_1319_cov_26.443239_pilon to pilon.fasta [pilon] Writing NODE_1351_length_1319_cov_14.333890:1-1319 changes to pilon.changes [pilon] Writing updated NODE_1351_length_1319_cov_14.333890_pilon to pilon.fasta [pilon] Writing NODE_1352_length_1318_cov_3.279031:1-1318 changes to pilon.changes [pilon] Writing updated NODE_1352_length_1318_cov_3.279031_pilon to pilon.fasta [pilon] Writing NODE_1353_length_1317_cov_38.780936:1-1317 changes to pilon.changes [pilon] Writing updated NODE_1353_length_1317_cov_38.780936_pilon to pilon.fasta [pilon] Writing NODE_1354_length_1317_cov_32.327759:1-1317 changes to pilon.changes [pilon] Writing updated NODE_1354_length_1317_cov_32.327759_pilon to pilon.fasta [pilon] Writing NODE_1355_length_1317_cov_24.282609:1-1317 changes to pilon.changes [pilon] Writing updated NODE_1355_length_1317_cov_24.282609_pilon to pilon.fasta [pilon] Writing NODE_1356_length_1316_cov_10.654393:1-1316 changes to pilon.changes [pilon] Writing updated NODE_1356_length_1316_cov_10.654393_pilon to pilon.fasta [pilon] Writing NODE_1357_length_1316_cov_2.500418:1-1316 changes to pilon.changes [pilon] Writing updated NODE_1357_length_1316_cov_2.500418_pilon to pilon.fasta [pilon] Writing NODE_1358_length_1316_cov_2.278661:1-1316 changes to pilon.changes [pilon] Writing updated NODE_1358_length_1316_cov_2.278661_pilon to pilon.fasta [pilon] Writing NODE_1359_length_1314_cov_21.559095:1-1314 changes to pilon.changes [pilon] Writing updated NODE_1359_length_1314_cov_21.559095_pilon to pilon.fasta [pilon] Writing NODE_1360_length_1313_cov_15.760067:1-1313 changes to pilon.changes [pilon] Writing updated NODE_1360_length_1313_cov_15.760067_pilon to pilon.fasta [pilon] Writing NODE_1361_length_1313_cov_15.274329:1-1313 changes to pilon.changes [pilon] Writing updated NODE_1361_length_1313_cov_15.274329_pilon to pilon.fasta [pilon] Writing NODE_1362_length_1313_cov_3.380872:1-1313 changes to pilon.changes [pilon] Writing updated NODE_1362_length_1313_cov_3.380872_pilon to pilon.fasta [pilon] Writing NODE_1363_length_1312_cov_15.183879:1-1312 changes to pilon.changes [pilon] Writing updated NODE_1363_length_1312_cov_15.183879_pilon to pilon.fasta [pilon] Writing NODE_1364_length_1311_cov_20.141176:1-1311 changes to pilon.changes [pilon] Writing updated NODE_1364_length_1311_cov_20.141176_pilon to pilon.fasta [pilon] Writing NODE_1365_length_1311_cov_16.090756:1-1311 changes to pilon.changes [pilon] Writing updated NODE_1365_length_1311_cov_16.090756_pilon to pilon.fasta [pilon] Writing NODE_1366_length_1311_cov_10.136975:1-1311 changes to pilon.changes [pilon] Writing updated NODE_1366_length_1311_cov_10.136975_pilon to pilon.fasta [pilon] Writing NODE_1367_length_1311_cov_5.063866:1-1311 changes to pilon.changes [pilon] Writing updated NODE_1367_length_1311_cov_5.063866_pilon to pilon.fasta [pilon] Writing NODE_1368_length_1311_cov_2.475630:1-1311 changes to pilon.changes [pilon] Writing updated NODE_1368_length_1311_cov_2.475630_pilon to pilon.fasta [pilon] Writing NODE_1369_length_1310_cov_29.030278:1-1310 changes to pilon.changes [pilon] Writing updated NODE_1369_length_1310_cov_29.030278_pilon to pilon.fasta [pilon] Writing NODE_1370_length_1310_cov_22.300252:1-1310 changes to pilon.changes [pilon] Writing updated NODE_1370_length_1310_cov_22.300252_pilon to pilon.fasta [pilon] Writing NODE_1371_length_1310_cov_2.024390:1-1310 changes to pilon.changes [pilon] Writing updated NODE_1371_length_1310_cov_2.024390_pilon to pilon.fasta [pilon] Writing NODE_1372_length_1309_cov_3.411616:1-1309 changes to pilon.changes [pilon] Writing updated NODE_1372_length_1309_cov_3.411616_pilon to pilon.fasta [pilon] Writing NODE_1373_length_1309_cov_2.989899:1-1309 changes to pilon.changes [pilon] Writing updated NODE_1373_length_1309_cov_2.989899_pilon to pilon.fasta [pilon] Writing NODE_1374_length_1309_cov_1.377946:1-1309 changes to pilon.changes [pilon] Writing updated NODE_1374_length_1309_cov_1.377946_pilon to pilon.fasta [pilon] Writing NODE_1375_length_1308_cov_1.978096:1-1308 changes to pilon.changes [pilon] Writing updated NODE_1375_length_1308_cov_1.978096_pilon to pilon.fasta [pilon] Writing NODE_1376_length_1307_cov_56.822934:1-1307 changes to pilon.changes [pilon] Writing updated NODE_1376_length_1307_cov_56.822934_pilon to pilon.fasta [pilon] Writing NODE_1377_length_1307_cov_19.155143:1-1307 changes to pilon.changes [pilon] Writing updated NODE_1377_length_1307_cov_19.155143_pilon to pilon.fasta [pilon] Writing NODE_1378_length_1307_cov_1.967116:1-1307 changes to pilon.changes [pilon] Writing updated NODE_1378_length_1307_cov_1.967116_pilon to pilon.fasta [pilon] Writing NODE_1379_length_1306_cov_22.426160:1-1306 changes to pilon.changes [pilon] Writing updated NODE_1379_length_1306_cov_22.426160_pilon to pilon.fasta [pilon] Writing NODE_1380_length_1304_cov_27.859679:1-1304 changes to pilon.changes [pilon] Writing updated NODE_1380_length_1304_cov_27.859679_pilon to pilon.fasta [pilon] Writing NODE_1381_length_1304_cov_17.807270:1-1304 changes to pilon.changes [pilon] Writing updated NODE_1381_length_1304_cov_17.807270_pilon to pilon.fasta [pilon] Writing NODE_1382_length_1304_cov_7.997464:1-1304 changes to pilon.changes [pilon] Writing updated NODE_1382_length_1304_cov_7.997464_pilon to pilon.fasta [pilon] Writing NODE_1383_length_1304_cov_3.291631:1-1304 changes to pilon.changes [pilon] Writing updated NODE_1383_length_1304_cov_3.291631_pilon to pilon.fasta [pilon] Writing NODE_1384_length_1303_cov_29.025381:1-1303 changes to pilon.changes [pilon] Writing updated NODE_1384_length_1303_cov_29.025381_pilon to pilon.fasta [pilon] Writing NODE_1385_length_1302_cov_21.991533:1-1302 changes to pilon.changes [pilon] Writing updated NODE_1385_length_1302_cov_21.991533_pilon to pilon.fasta [pilon] Writing NODE_1386_length_1302_cov_4.461473:1-1302 changes to pilon.changes [pilon] Writing updated NODE_1386_length_1302_cov_4.461473_pilon to pilon.fasta [pilon] Writing NODE_1387_length_1302_cov_1.002540:1-1302 changes to pilon.changes [pilon] Writing updated NODE_1387_length_1302_cov_1.002540_pilon to pilon.fasta [pilon] Writing NODE_1388_length_1300_cov_31.295165:1-1300 changes to pilon.changes [pilon] Writing updated NODE_1388_length_1300_cov_31.295165_pilon to pilon.fasta [pilon] Writing NODE_1389_length_1300_cov_26.424088:1-1300 changes to pilon.changes [pilon] Writing updated NODE_1389_length_1300_cov_26.424088_pilon to pilon.fasta [pilon] Writing NODE_1390_length_1300_cov_11.311281:1-1300 changes to pilon.changes [pilon] Writing updated NODE_1390_length_1300_cov_11.311281_pilon to pilon.fasta [pilon] Writing NODE_1391_length_1300_cov_7.889737:1-1300 changes to pilon.changes [pilon] Writing updated NODE_1391_length_1300_cov_7.889737_pilon to pilon.fasta [pilon] Writing NODE_1392_length_1299_cov_21.520374:1-1299 changes to pilon.changes [pilon] Writing updated NODE_1392_length_1299_cov_21.520374_pilon to pilon.fasta [pilon] Writing NODE_1393_length_1299_cov_1.904924:1-1299 changes to pilon.changes [pilon] Writing updated NODE_1393_length_1299_cov_1.904924_pilon to pilon.fasta [pilon] Writing NODE_1394_length_1298_cov_21.148683:1-1298 changes to pilon.changes [pilon] Writing updated NODE_1394_length_1298_cov_21.148683_pilon to pilon.fasta [pilon] Writing NODE_1395_length_1298_cov_19.516568:1-1298 changes to pilon.changes [pilon] Writing updated NODE_1395_length_1298_cov_19.516568_pilon to pilon.fasta [pilon] Writing NODE_1396_length_1298_cov_3.276126:1-1298 changes to pilon.changes [pilon] Writing updated NODE_1396_length_1298_cov_3.276126_pilon to pilon.fasta [pilon] Writing NODE_1397_length_1298_cov_2.498726:1-1298 changes to pilon.changes [pilon] Writing updated NODE_1397_length_1298_cov_2.498726_pilon to pilon.fasta [pilon] Writing NODE_1398_length_1297_cov_27.545068:1-1297 changes to pilon.changes [pilon] Writing updated NODE_1398_length_1297_cov_27.545068_pilon to pilon.fasta [pilon] Writing NODE_1399_length_1297_cov_27.477891:1-1297 changes to pilon.changes [pilon] Writing updated NODE_1399_length_1297_cov_27.477891_pilon to pilon.fasta [pilon] Writing NODE_1400_length_1297_cov_19.049320:1-1297 changes to pilon.changes [pilon] Writing updated NODE_1400_length_1297_cov_19.049320_pilon to pilon.fasta [pilon] Writing NODE_1401_length_1297_cov_18.723639:1-1297 changes to pilon.changes [pilon] Writing updated NODE_1401_length_1297_cov_18.723639_pilon to pilon.fasta [pilon] Writing NODE_1402_length_1297_cov_14.647959:1-1297 changes to pilon.changes [pilon] Writing updated NODE_1402_length_1297_cov_14.647959_pilon to pilon.fasta [pilon] Writing NODE_1403_length_1297_cov_14.063776:1-1297 changes to pilon.changes [pilon] Writing updated NODE_1403_length_1297_cov_14.063776_pilon to pilon.fasta [pilon] Writing NODE_1404_length_1297_cov_2.232993:1-1297 changes to pilon.changes [pilon] Writing updated NODE_1404_length_1297_cov_2.232993_pilon to pilon.fasta [pilon] Writing NODE_1405_length_1296_cov_20.257021:1-1296 changes to pilon.changes [pilon] Writing updated NODE_1405_length_1296_cov_20.257021_pilon to pilon.fasta [pilon] Writing NODE_1406_length_1296_cov_4.706383:1-1296 changes to pilon.changes [pilon] Writing updated NODE_1406_length_1296_cov_4.706383_pilon to pilon.fasta [pilon] Writing NODE_1407_length_1295_cov_25.216354:1-1295 changes to pilon.changes [pilon] Writing updated NODE_1407_length_1295_cov_25.216354_pilon to pilon.fasta [pilon] Writing NODE_1408_length_1295_cov_20.605622:1-1295 changes to pilon.changes [pilon] Writing updated NODE_1408_length_1295_cov_20.605622_pilon to pilon.fasta [pilon] Writing NODE_1409_length_1295_cov_17.569847:1-1295 changes to pilon.changes [pilon] Writing updated NODE_1409_length_1295_cov_17.569847_pilon to pilon.fasta [pilon] Writing NODE_1410_length_1295_cov_16.818569:1-1295 changes to pilon.changes [pilon] Writing updated NODE_1410_length_1295_cov_16.818569_pilon to pilon.fasta [pilon] Writing NODE_1411_length_1295_cov_13.962521:1-1295 changes to pilon.changes [pilon] Writing updated NODE_1411_length_1295_cov_13.962521_pilon to pilon.fasta [pilon] Writing NODE_1412_length_1295_cov_1.769165:1-1295 changes to pilon.changes [pilon] Writing updated NODE_1412_length_1295_cov_1.769165_pilon to pilon.fasta [pilon] Writing NODE_1413_length_1294_cov_17.503836:1-1294 changes to pilon.changes [pilon] Writing updated NODE_1413_length_1294_cov_17.503836_pilon to pilon.fasta [pilon] Writing NODE_1414_length_1293_cov_2.084471:1-1293 changes to pilon.changes [pilon] Writing updated NODE_1414_length_1293_cov_2.084471_pilon to pilon.fasta [pilon] Writing NODE_1415_length_1292_cov_27.161401:1-1292 changes to pilon.changes [pilon] Writing updated NODE_1415_length_1292_cov_27.161401_pilon to pilon.fasta [pilon] Writing NODE_1416_length_1292_cov_24.770282:1-1292 changes to pilon.changes [pilon] Writing updated NODE_1416_length_1292_cov_24.770282_pilon to pilon.fasta [pilon] Writing NODE_1417_length_1292_cov_21.009394:1-1292 changes to pilon.changes [pilon] Writing updated NODE_1417_length_1292_cov_21.009394_pilon to pilon.fasta [pilon] Writing NODE_1418_length_1292_cov_4.674637:1-1292 changes to pilon.changes [pilon] Writing updated NODE_1418_length_1292_cov_4.674637_pilon to pilon.fasta [pilon] Writing NODE_1419_length_1292_cov_2.049530:1-1292 changes to pilon.changes [pilon] Writing updated NODE_1419_length_1292_cov_2.049530_pilon to pilon.fasta [pilon] Writing NODE_1420_length_1291_cov_26.670085:1-1291 changes to pilon.changes [pilon] Writing updated NODE_1420_length_1291_cov_26.670085_pilon to pilon.fasta [pilon] Writing NODE_1421_length_1291_cov_26.269231:1-1291 changes to pilon.changes [pilon] Writing updated NODE_1421_length_1291_cov_26.269231_pilon to pilon.fasta [pilon] Writing NODE_1422_length_1291_cov_23.480342:1-1291 changes to pilon.changes [pilon] Writing updated NODE_1422_length_1291_cov_23.480342_pilon to pilon.fasta [pilon] Writing NODE_1423_length_1291_cov_18.576068:1-1291 changes to pilon.changes [pilon] Writing updated NODE_1423_length_1291_cov_18.576068_pilon to pilon.fasta [pilon] Writing NODE_1424_length_1291_cov_14.237607:1-1291 changes to pilon.changes [pilon] Writing updated NODE_1424_length_1291_cov_14.237607_pilon to pilon.fasta [pilon] Writing NODE_1425_length_1291_cov_2.900855:1-1291 changes to pilon.changes [pilon] Writing updated NODE_1425_length_1291_cov_2.900855_pilon to pilon.fasta [pilon] Writing NODE_1426_length_1291_cov_2.129915:1-1291 changes to pilon.changes [pilon] Writing updated NODE_1426_length_1291_cov_2.129915_pilon to pilon.fasta [pilon] Writing NODE_1427_length_1291_cov_1.888889:1-1291 changes to pilon.changes [pilon] Writing updated NODE_1427_length_1291_cov_1.888889_pilon to pilon.fasta [pilon] Writing NODE_1428_length_1290_cov_8.949530:1-1290 changes to pilon.changes [pilon] Writing updated NODE_1428_length_1290_cov_8.949530_pilon to pilon.fasta [pilon] Writing NODE_1429_length_1290_cov_2.230111:1-1290 changes to pilon.changes [pilon] Writing updated NODE_1429_length_1290_cov_2.230111_pilon to pilon.fasta [pilon] Writing NODE_1430_length_1289_cov_1.046233:1-1289 changes to pilon.changes [pilon] Writing updated NODE_1430_length_1289_cov_1.046233_pilon to pilon.fasta [pilon] Writing NODE_1431_length_1288_cov_2.616967:1-1288 changes to pilon.changes [pilon] Writing updated NODE_1431_length_1288_cov_2.616967_pilon to pilon.fasta [pilon] Writing NODE_1432_length_1287_cov_19.078045:1-1287 changes to pilon.changes [pilon] Writing updated NODE_1432_length_1287_cov_19.078045_pilon to pilon.fasta [pilon] Writing NODE_1433_length_1287_cov_16.237564:1-1287 changes to pilon.changes [pilon] Writing updated NODE_1433_length_1287_cov_16.237564_pilon to pilon.fasta [pilon] Writing NODE_1434_length_1286_cov_13.108155:1-1286 changes to pilon.changes [pilon] Writing updated NODE_1434_length_1286_cov_13.108155_pilon to pilon.fasta [pilon] Writing NODE_1435_length_1286_cov_9.277253:1-1286 changes to pilon.changes [pilon] Writing updated NODE_1435_length_1286_cov_9.277253_pilon to pilon.fasta [pilon] Writing NODE_1436_length_1286_cov_6.000858:1-1286 changes to pilon.changes [pilon] Writing updated NODE_1436_length_1286_cov_6.000858_pilon to pilon.fasta [pilon] Writing NODE_1437_length_1286_cov_1.151931:1-1286 changes to pilon.changes [pilon] Writing updated NODE_1437_length_1286_cov_1.151931_pilon to pilon.fasta [pilon] Writing NODE_1438_length_1285_cov_26.011168:1-1285 changes to pilon.changes [pilon] Writing updated NODE_1438_length_1285_cov_26.011168_pilon to pilon.fasta [pilon] Writing NODE_1439_length_1285_cov_15.238832:1-1285 changes to pilon.changes [pilon] Writing updated NODE_1439_length_1285_cov_15.238832_pilon to pilon.fasta [pilon] Writing NODE_1440_length_1285_cov_14.573024:1-1285 changes to pilon.changes [pilon] Writing updated NODE_1440_length_1285_cov_14.573024_pilon to pilon.fasta [pilon] Writing NODE_1441_length_1284_cov_32.703353:1-1284 changes to pilon.changes [pilon] Writing updated NODE_1441_length_1284_cov_32.703353_pilon to pilon.fasta [pilon] Writing NODE_1442_length_1284_cov_0.950989:1-1284 changes to pilon.changes [pilon] Writing updated NODE_1442_length_1284_cov_0.950989_pilon to pilon.fasta [pilon] Writing NODE_1443_length_1283_cov_21.267642:1-1283 changes to pilon.changes [pilon] Writing updated NODE_1443_length_1283_cov_21.267642_pilon to pilon.fasta [pilon] Writing NODE_1444_length_1283_cov_3.402754:1-1283 changes to pilon.changes [pilon] Writing updated NODE_1444_length_1283_cov_3.402754_pilon to pilon.fasta [pilon] Writing NODE_1445_length_1283_cov_2.430293:1-1283 changes to pilon.changes [pilon] Writing updated NODE_1445_length_1283_cov_2.430293_pilon to pilon.fasta [pilon] Writing NODE_1446_length_1282_cov_0.783807:1-1282 changes to pilon.changes [pilon] Writing updated NODE_1446_length_1282_cov_0.783807_pilon to pilon.fasta [pilon] Writing NODE_1447_length_1281_cov_17.152586:1-1281 changes to pilon.changes [pilon] Writing updated NODE_1447_length_1281_cov_17.152586_pilon to pilon.fasta [pilon] Writing NODE_1448_length_1281_cov_3.132759:1-1281 changes to pilon.changes [pilon] Writing updated NODE_1448_length_1281_cov_3.132759_pilon to pilon.fasta [pilon] Writing NODE_1449_length_1280_cov_20.987058:1-1280 changes to pilon.changes [pilon] Writing updated NODE_1449_length_1280_cov_20.987058_pilon to pilon.fasta [pilon] Writing NODE_1450_length_1280_cov_18.108714:1-1280 changes to pilon.changes [pilon] Writing updated NODE_1450_length_1280_cov_18.108714_pilon to pilon.fasta [pilon] Writing NODE_1451_length_1280_cov_9.163072:1-1280 changes to pilon.changes [pilon] Writing updated NODE_1451_length_1280_cov_9.163072_pilon to pilon.fasta [pilon] Writing NODE_1452_length_1280_cov_2.395168:1-1280 changes to pilon.changes [pilon] Writing updated NODE_1452_length_1280_cov_2.395168_pilon to pilon.fasta [pilon] Writing NODE_1453_length_1279_cov_20.580311:1-1279 changes to pilon.changes [pilon] Writing updated NODE_1453_length_1279_cov_20.580311_pilon to pilon.fasta [pilon] Writing NODE_1454_length_1279_cov_17.471503:1-1279 changes to pilon.changes [pilon] Writing updated NODE_1454_length_1279_cov_17.471503_pilon to pilon.fasta [pilon] Writing NODE_1455_length_1279_cov_14.195164:1-1279 changes to pilon.changes [pilon] Writing updated NODE_1455_length_1279_cov_14.195164_pilon to pilon.fasta [pilon] Writing NODE_1456_length_1279_cov_1.272021:1-1279 changes to pilon.changes [pilon] Writing updated NODE_1456_length_1279_cov_1.272021_pilon to pilon.fasta [pilon] Writing NODE_1457_length_1278_cov_20.452895:1-1278 changes to pilon.changes [pilon] Writing updated NODE_1457_length_1278_cov_20.452895_pilon to pilon.fasta [pilon] Writing NODE_1458_length_1278_cov_16.684529:1-1278 changes to pilon.changes [pilon] Writing updated NODE_1458_length_1278_cov_16.684529_pilon to pilon.fasta [pilon] Writing NODE_1459_length_1278_cov_14.737252:1-1278 changes to pilon.changes [pilon] Writing updated NODE_1459_length_1278_cov_14.737252_pilon to pilon.fasta [pilon] Writing NODE_1460_length_1278_cov_12.713915:1-1278 changes to pilon.changes [pilon] Writing updated NODE_1460_length_1278_cov_12.713915_pilon to pilon.fasta [pilon] Writing NODE_1461_length_1278_cov_4.057908:1-1278 changes to pilon.changes [pilon] Writing updated NODE_1461_length_1278_cov_4.057908_pilon to pilon.fasta [pilon] Writing NODE_1462_length_1277_cov_10.687716:1-1277 changes to pilon.changes [pilon] Writing updated NODE_1462_length_1277_cov_10.687716_pilon to pilon.fasta [pilon] Writing NODE_1463_length_1277_cov_8.230969:1-1277 changes to pilon.changes [pilon] Writing updated NODE_1463_length_1277_cov_8.230969_pilon to pilon.fasta [pilon] Writing NODE_1464_length_1276_cov_21.223377:1-1276 changes to pilon.changes [pilon] Writing updated NODE_1464_length_1276_cov_21.223377_pilon to pilon.fasta [pilon] Writing NODE_1465_length_1276_cov_2.560173:1-1276 changes to pilon.changes [pilon] Writing updated NODE_1465_length_1276_cov_2.560173_pilon to pilon.fasta [pilon] Writing NODE_1466_length_1276_cov_1.639827:1-1276 changes to pilon.changes [pilon] Writing updated NODE_1466_length_1276_cov_1.639827_pilon to pilon.fasta [pilon] Writing NODE_1467_length_1275_cov_25.346620:1-1275 changes to pilon.changes [pilon] Writing updated NODE_1467_length_1275_cov_25.346620_pilon to pilon.fasta [pilon] Writing NODE_1468_length_1275_cov_12.193241:1-1275 changes to pilon.changes [pilon] Writing updated NODE_1468_length_1275_cov_12.193241_pilon to pilon.fasta [pilon] Writing NODE_1469_length_1275_cov_11.216638:1-1275 changes to pilon.changes [pilon] Writing updated NODE_1469_length_1275_cov_11.216638_pilon to pilon.fasta [pilon] Writing NODE_1470_length_1274_cov_20.663487:1-1274 changes to pilon.changes [pilon] Writing updated NODE_1470_length_1274_cov_20.663487_pilon to pilon.fasta [pilon] Writing NODE_1471_length_1274_cov_19.231570:1-1274 changes to pilon.changes [pilon] Writing updated NODE_1471_length_1274_cov_19.231570_pilon to pilon.fasta [pilon] Writing NODE_1472_length_1274_cov_3.032090:1-1274 changes to pilon.changes [pilon] Writing updated NODE_1472_length_1274_cov_3.032090_pilon to pilon.fasta [pilon] Writing NODE_1473_length_1273_cov_18.132812:1-1273 changes to pilon.changes [pilon] Writing updated NODE_1473_length_1273_cov_18.132812_pilon to pilon.fasta [pilon] Writing NODE_1474_length_1273_cov_2.294271:1-1273 changes to pilon.changes [pilon] Writing updated NODE_1474_length_1273_cov_2.294271_pilon to pilon.fasta [pilon] Writing NODE_1475_length_1272_cov_41.282363:1-1272 changes to pilon.changes [pilon] Writing updated NODE_1475_length_1272_cov_41.282363_pilon to pilon.fasta [pilon] Writing NODE_1476_length_1272_cov_3.267593:1-1272 changes to pilon.changes [pilon] Writing updated NODE_1476_length_1272_cov_3.267593_pilon to pilon.fasta [pilon] Writing NODE_1477_length_1271_cov_12.527826:1-1271 changes to pilon.changes [pilon] Writing updated NODE_1477_length_1271_cov_12.527826_pilon to pilon.fasta [pilon] Writing NODE_1478_length_1271_cov_2.965217:1-1271 changes to pilon.changes [pilon] Writing updated NODE_1478_length_1271_cov_2.965217_pilon to pilon.fasta [pilon] Writing NODE_1479_length_1271_cov_2.338261:1-1271 changes to pilon.changes [pilon] Writing updated NODE_1479_length_1271_cov_2.338261_pilon to pilon.fasta [pilon] Writing NODE_1480_length_1270_cov_24.885988:1-1270 changes to pilon.changes [pilon] Writing updated NODE_1480_length_1270_cov_24.885988_pilon to pilon.fasta [pilon] Writing NODE_1481_length_1270_cov_22.943429:1-1270 changes to pilon.changes [pilon] Writing updated NODE_1481_length_1270_cov_22.943429_pilon to pilon.fasta [pilon] Writing NODE_1482_length_1270_cov_9.202785:1-1270 changes to pilon.changes [pilon] Writing updated NODE_1482_length_1270_cov_9.202785_pilon to pilon.fasta [pilon] Writing NODE_1483_length_1270_cov_1.798956:1-1270 changes to pilon.changes [pilon] Writing updated NODE_1483_length_1270_cov_1.798956_pilon to pilon.fasta [pilon] Writing NODE_1484_length_1269_cov_7.831882:1-1269 changes to pilon.changes [pilon] Writing updated NODE_1484_length_1269_cov_7.831882_pilon to pilon.fasta [pilon] Writing NODE_1485_length_1268_cov_3.373147:1-1268 changes to pilon.changes [pilon] Writing updated NODE_1485_length_1268_cov_3.373147_pilon to pilon.fasta [pilon] Writing NODE_1486_length_1268_cov_2.286835:1-1268 changes to pilon.changes [pilon] Writing updated NODE_1486_length_1268_cov_2.286835_pilon to pilon.fasta [pilon] Writing NODE_1487_length_1267_cov_4.005236:1-1267 changes to pilon.changes [pilon] Writing updated NODE_1487_length_1267_cov_4.005236_pilon to pilon.fasta [pilon] Writing NODE_1488_length_1267_cov_1.250436:1-1267 changes to pilon.changes [pilon] Writing updated NODE_1488_length_1267_cov_1.250436_pilon to pilon.fasta [pilon] Writing NODE_1489_length_1266_cov_2.175546:1-1266 changes to pilon.changes [pilon] Writing updated NODE_1489_length_1266_cov_2.175546_pilon to pilon.fasta [pilon] Writing NODE_1490_length_1265_cov_16.622378:1-1265 changes to pilon.changes [pilon] Writing updated NODE_1490_length_1265_cov_16.622378_pilon to pilon.fasta [pilon] Writing NODE_1491_length_1265_cov_10.116259:1-1265 changes to pilon.changes [pilon] Writing updated NODE_1491_length_1265_cov_10.116259_pilon to pilon.fasta [pilon] Writing NODE_1492_length_1263_cov_30.668126:1-1263 changes to pilon.changes [pilon] Writing updated NODE_1492_length_1263_cov_30.668126_pilon to pilon.fasta [pilon] Writing NODE_1493_length_1263_cov_7.321366:1-1263 changes to pilon.changes [pilon] Writing updated NODE_1493_length_1263_cov_7.321366_pilon to pilon.fasta [pilon] Writing NODE_1494_length_1259_cov_28.036028:1-1259 changes to pilon.changes [pilon] Writing updated NODE_1494_length_1259_cov_28.036028_pilon to pilon.fasta [pilon] Writing NODE_1495_length_1259_cov_22.955185:1-1259 changes to pilon.changes [pilon] Writing updated NODE_1495_length_1259_cov_22.955185_pilon to pilon.fasta [pilon] Writing NODE_1496_length_1259_cov_22.942004:1-1259 changes to pilon.changes [pilon] Writing updated NODE_1496_length_1259_cov_22.942004_pilon to pilon.fasta [pilon] Writing NODE_1497_length_1259_cov_17.141476:1-1259 changes to pilon.changes [pilon] Writing updated NODE_1497_length_1259_cov_17.141476_pilon to pilon.fasta [pilon] Writing NODE_1498_length_1259_cov_15.577329:1-1259 changes to pilon.changes [pilon] Writing updated NODE_1498_length_1259_cov_15.577329_pilon to pilon.fasta [pilon] Writing NODE_1499_length_1259_cov_2.731986:1-1259 changes to pilon.changes [pilon] Writing updated NODE_1499_length_1259_cov_2.731986_pilon to pilon.fasta [pilon] Writing NODE_1500_length_1258_cov_12.122252:1-1258 changes to pilon.changes [pilon] Writing updated NODE_1500_length_1258_cov_12.122252_pilon to pilon.fasta [pilon] Writing NODE_1501_length_1258_cov_2.265611:1-1258 changes to pilon.changes [pilon] Writing updated NODE_1501_length_1258_cov_2.265611_pilon to pilon.fasta [pilon] Writing NODE_1502_length_1258_cov_1.085312:1-1258 changes to pilon.changes [pilon] Writing updated NODE_1502_length_1258_cov_1.085312_pilon to pilon.fasta [pilon] Writing NODE_1503_length_1257_cov_30.147887:1-1257 changes to pilon.changes [pilon] Writing updated NODE_1503_length_1257_cov_30.147887_pilon to pilon.fasta [pilon] Writing NODE_1504_length_1257_cov_3.514965:1-1257 changes to pilon.changes [pilon] Writing updated NODE_1504_length_1257_cov_3.514965_pilon to pilon.fasta [pilon] Writing NODE_1505_length_1255_cov_24.216049:1-1255 changes to pilon.changes [pilon] Writing updated NODE_1505_length_1255_cov_24.216049_pilon to pilon.fasta [pilon] Writing NODE_1506_length_1255_cov_7.706349:1-1255 changes to pilon.changes [pilon] Writing updated NODE_1506_length_1255_cov_7.706349_pilon to pilon.fasta [pilon] Writing NODE_1507_length_1254_cov_42.440424:1-1254 changes to pilon.changes [pilon] Writing updated NODE_1507_length_1254_cov_42.440424_pilon to pilon.fasta [pilon] Writing NODE_1508_length_1254_cov_28.132392:1-1254 changes to pilon.changes [pilon] Writing updated NODE_1508_length_1254_cov_28.132392_pilon to pilon.fasta [pilon] Writing NODE_1509_length_1254_cov_2.321271:1-1254 changes to pilon.changes [pilon] Writing updated NODE_1509_length_1254_cov_2.321271_pilon to pilon.fasta [pilon] Writing NODE_1510_length_1253_cov_36.260601:1-1253 changes to pilon.changes [pilon] Writing updated NODE_1510_length_1253_cov_36.260601_pilon to pilon.fasta [pilon] Writing NODE_1511_length_1253_cov_19.794170:1-1253 changes to pilon.changes [pilon] Writing updated NODE_1511_length_1253_cov_19.794170_pilon to pilon.fasta [pilon] Writing NODE_1512_length_1252_cov_27.044209:1-1252 changes to pilon.changes [pilon] Writing updated NODE_1512_length_1252_cov_27.044209_pilon to pilon.fasta [pilon] Writing NODE_1513_length_1252_cov_21.503979:1-1252 changes to pilon.changes [pilon] Writing updated NODE_1513_length_1252_cov_21.503979_pilon to pilon.fasta [pilon] Writing NODE_1514_length_1252_cov_14.432361:1-1252 changes to pilon.changes [pilon] Writing updated NODE_1514_length_1252_cov_14.432361_pilon to pilon.fasta [pilon] Writing NODE_1515_length_1252_cov_12.898320:1-1252 changes to pilon.changes [pilon] Writing updated NODE_1515_length_1252_cov_12.898320_pilon to pilon.fasta [pilon] Writing NODE_1516_length_1252_cov_6.591512:1-1252 changes to pilon.changes [pilon] Writing updated NODE_1516_length_1252_cov_6.591512_pilon to pilon.fasta [pilon] Writing NODE_1517_length_1252_cov_1.392573:1-1252 changes to pilon.changes [pilon] Writing updated NODE_1517_length_1252_cov_1.392573_pilon to pilon.fasta [pilon] Writing NODE_1518_length_1251_cov_30.153097:1-1251 changes to pilon.changes [pilon] Writing updated NODE_1518_length_1251_cov_30.153097_pilon to pilon.fasta [pilon] Writing NODE_1519_length_1251_cov_21.137168:1-1251 changes to pilon.changes [pilon] Writing updated NODE_1519_length_1251_cov_21.137168_pilon to pilon.fasta [pilon] Writing NODE_1520_length_1251_cov_20.435398:1-1251 changes to pilon.changes [pilon] Writing updated NODE_1520_length_1251_cov_20.435398_pilon to pilon.fasta [pilon] Writing NODE_1521_length_1251_cov_2.169027:1-1251 changes to pilon.changes [pilon] Writing updated NODE_1521_length_1251_cov_2.169027_pilon to pilon.fasta [pilon] Writing NODE_1522_length_1250_cov_24.973428:1-1250 changes to pilon.changes [pilon] Writing updated NODE_1522_length_1250_cov_24.973428_pilon to pilon.fasta [pilon] Writing NODE_1523_length_1250_cov_21.604960:1-1250 changes to pilon.changes [pilon] Writing updated NODE_1523_length_1250_cov_21.604960_pilon to pilon.fasta [pilon] Writing NODE_1524_length_1250_cov_14.140833:1-1250 changes to pilon.changes [pilon] Writing updated NODE_1524_length_1250_cov_14.140833_pilon to pilon.fasta [pilon] Writing NODE_1525_length_1250_cov_2.385297:1-1250 changes to pilon.changes [pilon] Writing updated NODE_1525_length_1250_cov_2.385297_pilon to pilon.fasta [pilon] Writing NODE_1526_length_1250_cov_1.537644:1-1250 changes to pilon.changes [pilon] Writing updated NODE_1526_length_1250_cov_1.537644_pilon to pilon.fasta [pilon] Writing NODE_1527_length_1249_cov_13.789007:1-1249 changes to pilon.changes [pilon] Writing updated NODE_1527_length_1249_cov_13.789007_pilon to pilon.fasta [pilon] Writing NODE_1528_length_1249_cov_3.004433:1-1249 changes to pilon.changes [pilon] Writing updated NODE_1528_length_1249_cov_3.004433_pilon to pilon.fasta [pilon] Writing NODE_1529_length_1249_cov_2.105496:1-1249 changes to pilon.changes [pilon] Writing updated NODE_1529_length_1249_cov_2.105496_pilon to pilon.fasta [pilon] Writing NODE_1530_length_1249_cov_1.743794:1-1249 changes to pilon.changes [pilon] Writing updated NODE_1530_length_1249_cov_1.743794_pilon to pilon.fasta [pilon] Writing NODE_1531_length_1248_cov_52.409051:1-1248 changes to pilon.changes [pilon] Writing updated NODE_1531_length_1248_cov_52.409051_pilon to pilon.fasta [pilon] Writing NODE_1532_length_1248_cov_26.233363:1-1248 changes to pilon.changes [pilon] Writing updated NODE_1532_length_1248_cov_26.233363_pilon to pilon.fasta [pilon] Writing NODE_1533_length_1248_cov_8.529725:1-1248 changes to pilon.changes [pilon] Writing updated NODE_1533_length_1248_cov_8.529725_pilon to pilon.fasta [pilon] Writing NODE_1534_length_1247_cov_3.531972:1-1247 changes to pilon.changes [pilon] Writing updated NODE_1534_length_1247_cov_3.531972_pilon to pilon.fasta [pilon] Writing NODE_1535_length_1247_cov_3.004440:1-1247 changes to pilon.changes [pilon] Writing updated NODE_1535_length_1247_cov_3.004440_pilon to pilon.fasta [pilon] Writing NODE_1536_length_1247_cov_1.712256:1-1247 changes to pilon.changes [pilon] Writing updated NODE_1536_length_1247_cov_1.712256_pilon to pilon.fasta [pilon] Writing NODE_1537_length_1246_cov_32.941333:1-1246 changes to pilon.changes [pilon] Writing updated NODE_1537_length_1246_cov_32.941333_pilon to pilon.fasta [pilon] Writing NODE_1538_length_1246_cov_27.416000:1-1246 changes to pilon.changes [pilon] Writing updated NODE_1538_length_1246_cov_27.416000_pilon to pilon.fasta [pilon] Writing NODE_1539_length_1246_cov_26.665778:1-1246 changes to pilon.changes [pilon] Writing updated NODE_1539_length_1246_cov_26.665778_pilon to pilon.fasta [pilon] Writing NODE_1540_length_1244_cov_12.484417:1-1244 changes to pilon.changes [pilon] Writing updated NODE_1540_length_1244_cov_12.484417_pilon to pilon.fasta [pilon] Writing NODE_1541_length_1243_cov_24.587344:1-1243 changes to pilon.changes [pilon] Writing updated NODE_1541_length_1243_cov_24.587344_pilon to pilon.fasta [pilon] Writing NODE_1542_length_1243_cov_22.268271:1-1243 changes to pilon.changes [pilon] Writing updated NODE_1542_length_1243_cov_22.268271_pilon to pilon.fasta [pilon] Writing NODE_1543_length_1243_cov_4.217469:1-1243 changes to pilon.changes [pilon] Writing updated NODE_1543_length_1243_cov_4.217469_pilon to pilon.fasta [pilon] Writing NODE_1544_length_1243_cov_1.309269:1-1243 changes to pilon.changes [pilon] Writing updated NODE_1544_length_1243_cov_1.309269_pilon to pilon.fasta [pilon] Writing NODE_1545_length_1242_cov_10.351472:1-1242 changes to pilon.changes [pilon] Writing updated NODE_1545_length_1242_cov_10.351472_pilon to pilon.fasta [pilon] Writing NODE_1546_length_1242_cov_0.855486:1-1242 changes to pilon.changes [pilon] Writing updated NODE_1546_length_1242_cov_0.855486_pilon to pilon.fasta [pilon] Writing NODE_1547_length_1241_cov_33.745536:1-1241 changes to pilon.changes [pilon] Writing updated NODE_1547_length_1241_cov_33.745536_pilon to pilon.fasta [pilon] Writing NODE_1548_length_1241_cov_10.137500:1-1241 changes to pilon.changes [pilon] Writing updated NODE_1548_length_1241_cov_10.137500_pilon to pilon.fasta [pilon] Writing NODE_1549_length_1241_cov_1.876786:1-1241 changes to pilon.changes [pilon] Writing updated NODE_1549_length_1241_cov_1.876786_pilon to pilon.fasta [pilon] Writing NODE_1550_length_1240_cov_24.548704:1-1240 changes to pilon.changes [pilon] Writing updated NODE_1550_length_1240_cov_24.548704_pilon to pilon.fasta [pilon] Writing NODE_1551_length_1240_cov_2.699732:1-1240 changes to pilon.changes [pilon] Writing updated NODE_1551_length_1240_cov_2.699732_pilon to pilon.fasta [pilon] Writing NODE_1552_length_1239_cov_30.598390:1-1239 changes to pilon.changes [pilon] Writing updated NODE_1552_length_1239_cov_30.598390_pilon to pilon.fasta [pilon] Writing NODE_1553_length_1239_cov_19.438283:1-1239 changes to pilon.changes [pilon] Writing updated NODE_1553_length_1239_cov_19.438283_pilon to pilon.fasta [pilon] Writing NODE_1554_length_1239_cov_3.400716:1-1239 changes to pilon.changes [pilon] Writing updated NODE_1554_length_1239_cov_3.400716_pilon to pilon.fasta [pilon] Writing NODE_1555_length_1238_cov_33.483438:1-1238 changes to pilon.changes [pilon] Writing updated NODE_1555_length_1238_cov_33.483438_pilon to pilon.fasta [pilon] Writing NODE_1556_length_1238_cov_29.616831:1-1238 changes to pilon.changes [pilon] Writing updated NODE_1556_length_1238_cov_29.616831_pilon to pilon.fasta [pilon] Writing NODE_1557_length_1237_cov_2.766129:1-1237 changes to pilon.changes [pilon] Writing updated NODE_1557_length_1237_cov_2.766129_pilon to pilon.fasta [pilon] Writing NODE_1558_length_1236_cov_14.072646:1-1236 changes to pilon.changes [pilon] Writing updated NODE_1558_length_1236_cov_14.072646_pilon to pilon.fasta [pilon] Writing NODE_1559_length_1233_cov_25.262590:1-1233 changes to pilon.changes [pilon] Writing updated NODE_1559_length_1233_cov_25.262590_pilon to pilon.fasta [pilon] Writing NODE_1560_length_1233_cov_24.608813:1-1233 changes to pilon.changes [pilon] Writing updated NODE_1560_length_1233_cov_24.608813_pilon to pilon.fasta [pilon] Writing NODE_1561_length_1233_cov_20.647482:1-1233 changes to pilon.changes [pilon] Writing updated NODE_1561_length_1233_cov_20.647482_pilon to pilon.fasta [pilon] Writing NODE_1562_length_1233_cov_18.732014:1-1233 changes to pilon.changes [pilon] Writing updated NODE_1562_length_1233_cov_18.732014_pilon to pilon.fasta [pilon] Writing NODE_1563_length_1232_cov_34.836184:1-1232 changes to pilon.changes [pilon] Writing updated NODE_1563_length_1232_cov_34.836184_pilon to pilon.fasta [pilon] Writing NODE_1564_length_1232_cov_20.761476:1-1232 changes to pilon.changes [pilon] Writing updated NODE_1564_length_1232_cov_20.761476_pilon to pilon.fasta [pilon] Writing NODE_1565_length_1232_cov_16.137714:1-1232 changes to pilon.changes [pilon] Writing updated NODE_1565_length_1232_cov_16.137714_pilon to pilon.fasta [pilon] Writing NODE_1566_length_1232_cov_14.148515:1-1232 changes to pilon.changes [pilon] Writing updated NODE_1566_length_1232_cov_14.148515_pilon to pilon.fasta [pilon] Writing NODE_1567_length_1232_cov_12.395140:1-1232 changes to pilon.changes [pilon] Writing updated NODE_1567_length_1232_cov_12.395140_pilon to pilon.fasta [pilon] Writing NODE_1568_length_1231_cov_16.607207:1-1231 changes to pilon.changes [pilon] Writing updated NODE_1568_length_1231_cov_16.607207_pilon to pilon.fasta [pilon] Writing NODE_1569_length_1230_cov_37.708747:1-1230 changes to pilon.changes [pilon] Writing updated NODE_1569_length_1230_cov_37.708747_pilon to pilon.fasta [pilon] Writing NODE_1570_length_1230_cov_29.341749:1-1230 changes to pilon.changes [pilon] Writing updated NODE_1570_length_1230_cov_29.341749_pilon to pilon.fasta [pilon] Writing NODE_1571_length_1230_cov_3.458070:1-1230 changes to pilon.changes [pilon] Writing updated NODE_1571_length_1230_cov_3.458070_pilon to pilon.fasta [pilon] Writing NODE_1572_length_1229_cov_21.052347:1-1229 changes to pilon.changes [pilon] Writing updated NODE_1572_length_1229_cov_21.052347_pilon to pilon.fasta [pilon] Writing NODE_1573_length_1229_cov_8.765343:1-1229 changes to pilon.changes [pilon] Writing updated NODE_1573_length_1229_cov_8.765343_pilon to pilon.fasta [pilon] Writing NODE_1574_length_1228_cov_46.760614:1-1228 changes to pilon.changes [pilon] Writing updated NODE_1574_length_1228_cov_46.760614_pilon to pilon.fasta [pilon] Writing NODE_1575_length_1228_cov_23.735321:1-1228 changes to pilon.changes [pilon] Writing updated NODE_1575_length_1228_cov_23.735321_pilon to pilon.fasta [pilon] Writing NODE_1576_length_1228_cov_13.928636:1-1228 changes to pilon.changes [pilon] Writing updated NODE_1576_length_1228_cov_13.928636_pilon to pilon.fasta [pilon] Writing NODE_1577_length_1228_cov_8.923216:1-1228 changes to pilon.changes [pilon] Writing updated NODE_1577_length_1228_cov_8.923216_pilon to pilon.fasta [pilon] Writing NODE_1578_length_1228_cov_2.270099:1-1228 changes to pilon.changes [pilon] Writing updated NODE_1578_length_1228_cov_2.270099_pilon to pilon.fasta [pilon] Writing NODE_1579_length_1227_cov_14.357143:1-1227 changes to pilon.changes [pilon] Writing updated NODE_1579_length_1227_cov_14.357143_pilon to pilon.fasta [pilon] Writing NODE_1580_length_1227_cov_2.821881:1-1227 changes to pilon.changes [pilon] Writing updated NODE_1580_length_1227_cov_2.821881_pilon to pilon.fasta [pilon] Writing NODE_1581_length_1225_cov_42.170290:1-1225 changes to pilon.changes [pilon] Writing updated NODE_1581_length_1225_cov_42.170290_pilon to pilon.fasta [pilon] Writing NODE_1582_length_1225_cov_33.210145:1-1225 changes to pilon.changes [pilon] Writing updated NODE_1582_length_1225_cov_33.210145_pilon to pilon.fasta [pilon] Writing NODE_1583_length_1225_cov_29.239130:1-1225 changes to pilon.changes [pilon] Writing updated NODE_1583_length_1225_cov_29.239130_pilon to pilon.fasta [pilon] Writing NODE_1584_length_1225_cov_18.363225:1-1225 changes to pilon.changes [pilon] Writing updated NODE_1584_length_1225_cov_18.363225_pilon to pilon.fasta [pilon] Writing NODE_1585_length_1224_cov_20.945603:1-1224 changes to pilon.changes [pilon] Writing updated NODE_1585_length_1224_cov_20.945603_pilon to pilon.fasta [pilon] Writing NODE_1586_length_1224_cov_20.341795:1-1224 changes to pilon.changes [pilon] Writing updated NODE_1586_length_1224_cov_20.341795_pilon to pilon.fasta [pilon] Writing NODE_1587_length_1224_cov_15.073436:1-1224 changes to pilon.changes [pilon] Writing updated NODE_1587_length_1224_cov_15.073436_pilon to pilon.fasta [pilon] Writing NODE_1588_length_1224_cov_2.134180:1-1224 changes to pilon.changes [pilon] Writing updated NODE_1588_length_1224_cov_2.134180_pilon to pilon.fasta [pilon] Writing NODE_1589_length_1223_cov_29.856624:1-1223 changes to pilon.changes [pilon] Writing updated NODE_1589_length_1223_cov_29.856624_pilon to pilon.fasta [pilon] Writing NODE_1590_length_1222_cov_18.724796:1-1222 changes to pilon.changes [pilon] Writing updated NODE_1590_length_1222_cov_18.724796_pilon to pilon.fasta [pilon] Writing NODE_1591_length_1221_cov_39.890000:1-1221 changes to pilon.changes [pilon] Writing updated NODE_1591_length_1221_cov_39.890000_pilon to pilon.fasta [pilon] Writing NODE_1592_length_1221_cov_35.983636:1-1221 changes to pilon.changes [pilon] Writing updated NODE_1592_length_1221_cov_35.983636_pilon to pilon.fasta [pilon] Writing NODE_1593_length_1221_cov_10.008182:1-1221 changes to pilon.changes [pilon] Writing updated NODE_1593_length_1221_cov_10.008182_pilon to pilon.fasta [pilon] Writing NODE_1594_length_1221_cov_1.601818:1-1221 changes to pilon.changes [pilon] Writing updated NODE_1594_length_1221_cov_1.601818_pilon to pilon.fasta [pilon] Writing NODE_1595_length_1219_cov_2.538251:1-1219 changes to pilon.changes [pilon] Writing updated NODE_1595_length_1219_cov_2.538251_pilon to pilon.fasta [pilon] Writing NODE_1596_length_1219_cov_1.091985:1-1219 changes to pilon.changes [pilon] Writing updated NODE_1596_length_1219_cov_1.091985_pilon to pilon.fasta [pilon] Writing NODE_1597_length_1218_cov_45.597083:1-1218 changes to pilon.changes [pilon] Writing updated NODE_1597_length_1218_cov_45.597083_pilon to pilon.fasta [pilon] Writing NODE_1598_length_1218_cov_23.536919:1-1218 changes to pilon.changes [pilon] Writing updated NODE_1598_length_1218_cov_23.536919_pilon to pilon.fasta [pilon] Writing NODE_1599_length_1218_cov_17.463081:1-1218 changes to pilon.changes [pilon] Writing updated NODE_1599_length_1218_cov_17.463081_pilon to pilon.fasta [pilon] Writing NODE_1600_length_1218_cov_2.858706:1-1218 changes to pilon.changes [pilon] Writing updated NODE_1600_length_1218_cov_2.858706_pilon to pilon.fasta [pilon] Writing NODE_1601_length_1218_cov_2.489517:1-1218 changes to pilon.changes [pilon] Writing updated NODE_1601_length_1218_cov_2.489517_pilon to pilon.fasta [pilon] Writing NODE_1602_length_1216_cov_26.721461:1-1216 changes to pilon.changes [pilon] Writing updated NODE_1602_length_1216_cov_26.721461_pilon to pilon.fasta [pilon] Writing NODE_1603_length_1216_cov_22.825571:1-1216 changes to pilon.changes [pilon] Writing updated NODE_1603_length_1216_cov_22.825571_pilon to pilon.fasta [pilon] Writing NODE_1604_length_1215_cov_35.643510:1-1215 changes to pilon.changes [pilon] Writing updated NODE_1604_length_1215_cov_35.643510_pilon to pilon.fasta [pilon] Writing NODE_1605_length_1214_cov_15.450137:1-1214 changes to pilon.changes [pilon] Writing updated NODE_1605_length_1214_cov_15.450137_pilon to pilon.fasta [pilon] Writing NODE_1606_length_1214_cov_8.849039:1-1214 changes to pilon.changes [pilon] Writing updated NODE_1606_length_1214_cov_8.849039_pilon to pilon.fasta [pilon] Writing NODE_1607_length_1214_cov_1.946935:1-1214 changes to pilon.changes [pilon] Writing updated NODE_1607_length_1214_cov_1.946935_pilon to pilon.fasta [pilon] Writing NODE_1608_length_1213_cov_28.161172:1-1213 changes to pilon.changes [pilon] Writing updated NODE_1608_length_1213_cov_28.161172_pilon to pilon.fasta [pilon] Writing NODE_1609_length_1213_cov_18.075092:1-1213 changes to pilon.changes [pilon] Writing updated NODE_1609_length_1213_cov_18.075092_pilon to pilon.fasta [pilon] Writing NODE_1610_length_1213_cov_5.154762:1-1213 changes to pilon.changes [pilon] Writing updated NODE_1610_length_1213_cov_5.154762_pilon to pilon.fasta [pilon] Writing NODE_1611_length_1212_cov_28.555454:1-1212 changes to pilon.changes [pilon] Writing updated NODE_1611_length_1212_cov_28.555454_pilon to pilon.fasta [pilon] Writing NODE_1612_length_1212_cov_20.645280:1-1212 changes to pilon.changes [pilon] Writing updated NODE_1612_length_1212_cov_20.645280_pilon to pilon.fasta [pilon] Writing NODE_1613_length_1212_cov_20.554537:1-1212 changes to pilon.changes [pilon] Writing updated NODE_1613_length_1212_cov_20.554537_pilon to pilon.fasta [pilon] Writing NODE_1614_length_1212_cov_9.529789:1-1212 changes to pilon.changes [pilon] Writing updated NODE_1614_length_1212_cov_9.529789_pilon to pilon.fasta [pilon] Writing NODE_1615_length_1212_cov_3.660862:1-1212 changes to pilon.changes [pilon] Writing updated NODE_1615_length_1212_cov_3.660862_pilon to pilon.fasta [pilon] Writing NODE_1616_length_1212_cov_1.915674:1-1212 changes to pilon.changes [pilon] Writing updated NODE_1616_length_1212_cov_1.915674_pilon to pilon.fasta [pilon] Writing NODE_1617_length_1212_cov_1.749771:1-1212 changes to pilon.changes [pilon] Writing updated NODE_1617_length_1212_cov_1.749771_pilon to pilon.fasta [pilon] Writing NODE_1618_length_1211_cov_26.583486:1-1211 changes to pilon.changes [pilon] Writing updated NODE_1618_length_1211_cov_26.583486_pilon to pilon.fasta [pilon] Writing NODE_1619_length_1211_cov_6.855963:1-1211 changes to pilon.changes [pilon] Writing updated NODE_1619_length_1211_cov_6.855963_pilon to pilon.fasta [pilon] Writing NODE_1620_length_1210_cov_25.738292:1-1210 changes to pilon.changes [pilon] Writing updated NODE_1620_length_1210_cov_25.738292_pilon to pilon.fasta [pilon] Writing NODE_1621_length_1210_cov_23.774105:1-1210 changes to pilon.changes [pilon] Writing updated NODE_1621_length_1210_cov_23.774105_pilon to pilon.fasta [pilon] Writing NODE_1622_length_1210_cov_20.580349:1-1210 changes to pilon.changes [pilon] Writing updated NODE_1622_length_1210_cov_20.580349_pilon to pilon.fasta [pilon] Writing NODE_1623_length_1210_cov_3.049587:1-1210 changes to pilon.changes [pilon] Writing updated NODE_1623_length_1210_cov_3.049587_pilon to pilon.fasta [pilon] Writing NODE_1624_length_1209_cov_20.974265:1-1209 changes to pilon.changes [pilon] Writing updated NODE_1624_length_1209_cov_20.974265_pilon to pilon.fasta [pilon] Writing NODE_1625_length_1209_cov_2.104779:1-1209 changes to pilon.changes [pilon] Writing updated NODE_1625_length_1209_cov_2.104779_pilon to pilon.fasta [pilon] Writing NODE_1626_length_1209_cov_0.704044:1-1209 changes to pilon.changes [pilon] Writing updated NODE_1626_length_1209_cov_0.704044_pilon to pilon.fasta [pilon] Writing NODE_1627_length_1208_cov_16.298988:1-1208 changes to pilon.changes [pilon] Writing updated NODE_1627_length_1208_cov_16.298988_pilon to pilon.fasta [pilon] Writing NODE_1628_length_1207_cov_20.483425:1-1207 changes to pilon.changes [pilon] Writing updated NODE_1628_length_1207_cov_20.483425_pilon to pilon.fasta [pilon] Writing NODE_1629_length_1206_cov_27.983410:1-1206 changes to pilon.changes [pilon] Writing updated NODE_1629_length_1206_cov_27.983410_pilon to pilon.fasta [pilon] Writing NODE_1630_length_1206_cov_1.157604:1-1206 changes to pilon.changes [pilon] Writing updated NODE_1630_length_1206_cov_1.157604_pilon to pilon.fasta [pilon] Writing NODE_1631_length_1205_cov_28.175277:1-1205 changes to pilon.changes [pilon] Writing updated NODE_1631_length_1205_cov_28.175277_pilon to pilon.fasta [pilon] Writing NODE_1632_length_1205_cov_14.326568:1-1205 changes to pilon.changes [pilon] Writing updated NODE_1632_length_1205_cov_14.326568_pilon to pilon.fasta [pilon] Writing NODE_1633_length_1205_cov_6.863469:1-1205 changes to pilon.changes [pilon] Writing updated NODE_1633_length_1205_cov_6.863469_pilon to pilon.fasta [pilon] Writing NODE_1634_length_1205_cov_6.669742:1-1205 changes to pilon.changes [pilon] Writing updated NODE_1634_length_1205_cov_6.669742_pilon to pilon.fasta [pilon] Writing NODE_1635_length_1205_cov_1.041513:1-1205 changes to pilon.changes [pilon] Writing updated NODE_1635_length_1205_cov_1.041513_pilon to pilon.fasta [pilon] Writing NODE_1636_length_1204_cov_3.612188:1-1204 changes to pilon.changes [pilon] Writing updated NODE_1636_length_1204_cov_3.612188_pilon to pilon.fasta [pilon] Writing NODE_1637_length_1204_cov_3.466297:1-1204 changes to pilon.changes [pilon] Writing updated NODE_1637_length_1204_cov_3.466297_pilon to pilon.fasta [pilon] Writing NODE_1638_length_1204_cov_3.282548:1-1204 changes to pilon.changes [pilon] Writing updated NODE_1638_length_1204_cov_3.282548_pilon to pilon.fasta [pilon] Writing NODE_1639_length_1204_cov_2.268698:1-1204 changes to pilon.changes [pilon] Writing updated NODE_1639_length_1204_cov_2.268698_pilon to pilon.fasta [pilon] Writing NODE_1640_length_1203_cov_26.567468:1-1203 changes to pilon.changes [pilon] Writing updated NODE_1640_length_1203_cov_26.567468_pilon to pilon.fasta [pilon] Writing NODE_1641_length_1203_cov_22.224584:1-1203 changes to pilon.changes [pilon] Writing updated NODE_1641_length_1203_cov_22.224584_pilon to pilon.fasta [pilon] Writing NODE_1642_length_1203_cov_2.242144:1-1203 changes to pilon.changes [pilon] Writing updated NODE_1642_length_1203_cov_2.242144_pilon to pilon.fasta [pilon] Writing NODE_1643_length_1202_cov_2.876966:1-1202 changes to pilon.changes [pilon] Writing updated NODE_1643_length_1202_cov_2.876966_pilon to pilon.fasta [pilon] Writing NODE_1644_length_1202_cov_2.295097:1-1202 changes to pilon.changes [pilon] Writing updated NODE_1644_length_1202_cov_2.295097_pilon to pilon.fasta [pilon] Writing NODE_1645_length_1201_cov_12.885185:1-1201 changes to pilon.changes [pilon] Writing updated NODE_1645_length_1201_cov_12.885185_pilon to pilon.fasta [pilon] Writing NODE_1646_length_1201_cov_8.573148:1-1201 changes to pilon.changes [pilon] Writing updated NODE_1646_length_1201_cov_8.573148_pilon to pilon.fasta [pilon] Writing NODE_1647_length_1201_cov_5.894444:1-1201 changes to pilon.changes [pilon] Writing updated NODE_1647_length_1201_cov_5.894444_pilon to pilon.fasta [pilon] Writing NODE_1648_length_1200_cov_36.744208:1-1200 changes to pilon.changes [pilon] Writing updated NODE_1648_length_1200_cov_36.744208_pilon to pilon.fasta [pilon] Writing NODE_1649_length_1200_cov_25.695088:1-1200 changes to pilon.changes [pilon] Writing updated NODE_1649_length_1200_cov_25.695088_pilon to pilon.fasta [pilon] Writing NODE_1650_length_1200_cov_17.691381:1-1200 changes to pilon.changes [pilon] Writing updated NODE_1650_length_1200_cov_17.691381_pilon to pilon.fasta [pilon] Writing NODE_1651_length_1200_cov_8.567192:1-1200 changes to pilon.changes [pilon] Writing updated NODE_1651_length_1200_cov_8.567192_pilon to pilon.fasta [pilon] Writing NODE_1652_length_1200_cov_4.078777:1-1200 changes to pilon.changes [pilon] Writing updated NODE_1652_length_1200_cov_4.078777_pilon to pilon.fasta [pilon] Writing NODE_1653_length_1200_cov_1.832252:1-1200 changes to pilon.changes [pilon] Writing updated NODE_1653_length_1200_cov_1.832252_pilon to pilon.fasta [pilon] Writing NODE_1654_length_1199_cov_20.624304:1-1199 changes to pilon.changes [pilon] Writing updated NODE_1654_length_1199_cov_20.624304_pilon to pilon.fasta [pilon] Writing NODE_1655_length_1199_cov_6.688312:1-1199 changes to pilon.changes [pilon] Writing updated NODE_1655_length_1199_cov_6.688312_pilon to pilon.fasta [pilon] Writing NODE_1656_length_1198_cov_21.374188:1-1198 changes to pilon.changes [pilon] Writing updated NODE_1656_length_1198_cov_21.374188_pilon to pilon.fasta [pilon] Writing NODE_1657_length_1198_cov_16.859796:1-1198 changes to pilon.changes [pilon] Writing updated NODE_1657_length_1198_cov_16.859796_pilon to pilon.fasta [pilon] Writing NODE_1658_length_1197_cov_14.975836:1-1197 changes to pilon.changes [pilon] Writing updated NODE_1658_length_1197_cov_14.975836_pilon to pilon.fasta [pilon] Writing NODE_1659_length_1197_cov_6.118959:1-1197 changes to pilon.changes [pilon] Writing updated NODE_1659_length_1197_cov_6.118959_pilon to pilon.fasta [pilon] Writing NODE_1660_length_1197_cov_2.183086:1-1197 changes to pilon.changes [pilon] Writing updated NODE_1660_length_1197_cov_2.183086_pilon to pilon.fasta [pilon] Writing NODE_1661_length_1196_cov_10.862326:1-1196 changes to pilon.changes [pilon] Writing updated NODE_1661_length_1196_cov_10.862326_pilon to pilon.fasta [pilon] Writing NODE_1662_length_1196_cov_1.820465:1-1196 changes to pilon.changes [pilon] Writing updated NODE_1662_length_1196_cov_1.820465_pilon to pilon.fasta [pilon] Writing NODE_1663_length_1195_cov_36.107076:1-1195 changes to pilon.changes [pilon] Writing updated NODE_1663_length_1195_cov_36.107076_pilon to pilon.fasta [pilon] Writing NODE_1664_length_1195_cov_18.150838:1-1195 changes to pilon.changes [pilon] Writing updated NODE_1664_length_1195_cov_18.150838_pilon to pilon.fasta [pilon] Writing NODE_1665_length_1195_cov_18.026071:1-1195 changes to pilon.changes [pilon] Writing updated NODE_1665_length_1195_cov_18.026071_pilon to pilon.fasta [pilon] Writing NODE_1666_length_1195_cov_17.231844:1-1195 changes to pilon.changes [pilon] Writing updated NODE_1666_length_1195_cov_17.231844_pilon to pilon.fasta [pilon] Writing NODE_1667_length_1194_cov_14.492078:1-1194 changes to pilon.changes [pilon] Writing updated NODE_1667_length_1194_cov_14.492078_pilon to pilon.fasta [pilon] Writing NODE_1668_length_1193_cov_21.097948:1-1193 changes to pilon.changes [pilon] Writing updated NODE_1668_length_1193_cov_21.097948_pilon to pilon.fasta [pilon] Writing NODE_1669_length_1193_cov_2.937500:1-1193 changes to pilon.changes [pilon] Writing updated NODE_1669_length_1193_cov_2.937500_pilon to pilon.fasta [pilon] Writing NODE_1670_length_1193_cov_1.561567:1-1193 changes to pilon.changes [pilon] Writing updated NODE_1670_length_1193_cov_1.561567_pilon to pilon.fasta [pilon] Writing NODE_1671_length_1192_cov_8.540616:1-1192 changes to pilon.changes [pilon] Writing updated NODE_1671_length_1192_cov_8.540616_pilon to pilon.fasta [pilon] Writing NODE_1672_length_1191_cov_22.377570:1-1191 changes to pilon.changes [pilon] Writing updated NODE_1672_length_1191_cov_22.377570_pilon to pilon.fasta [pilon] Writing NODE_1673_length_1191_cov_21.374766:1-1191 changes to pilon.changes [pilon] Writing updated NODE_1673_length_1191_cov_21.374766_pilon to pilon.fasta [pilon] Writing NODE_1674_length_1191_cov_18.700935:1-1191 changes to pilon.changes [pilon] Writing updated NODE_1674_length_1191_cov_18.700935_pilon to pilon.fasta [pilon] Writing NODE_1675_length_1191_cov_16.706542:1-1191 changes to pilon.changes [pilon] Writing updated NODE_1675_length_1191_cov_16.706542_pilon to pilon.fasta [pilon] Writing NODE_1676_length_1190_cov_31.080449:1-1190 changes to pilon.changes [pilon] Writing updated NODE_1676_length_1190_cov_31.080449_pilon to pilon.fasta [pilon] Writing NODE_1677_length_1190_cov_12.650140:1-1190 changes to pilon.changes [pilon] Writing updated NODE_1677_length_1190_cov_12.650140_pilon to pilon.fasta [pilon] Writing NODE_1678_length_1190_cov_2.769878:1-1190 changes to pilon.changes [pilon] Writing updated NODE_1678_length_1190_cov_2.769878_pilon to pilon.fasta [pilon] Writing NODE_1679_length_1189_cov_27.430712:1-1189 changes to pilon.changes [pilon] Writing updated NODE_1679_length_1189_cov_27.430712_pilon to pilon.fasta [pilon] Writing NODE_1680_length_1189_cov_18.531835:1-1189 changes to pilon.changes [pilon] Writing updated NODE_1680_length_1189_cov_18.531835_pilon to pilon.fasta [pilon] Writing NODE_1681_length_1189_cov_17.691011:1-1189 changes to pilon.changes [pilon] Writing updated NODE_1681_length_1189_cov_17.691011_pilon to pilon.fasta [pilon] Writing NODE_1682_length_1189_cov_14.704120:1-1189 changes to pilon.changes [pilon] Writing updated NODE_1682_length_1189_cov_14.704120_pilon to pilon.fasta [pilon] Writing NODE_1683_length_1189_cov_8.014981:1-1189 changes to pilon.changes [pilon] Writing updated NODE_1683_length_1189_cov_8.014981_pilon to pilon.fasta [pilon] Writing NODE_1684_length_1187_cov_36.861163:1-1187 changes to pilon.changes [pilon] Writing updated NODE_1684_length_1187_cov_36.861163_pilon to pilon.fasta [pilon] Writing NODE_1685_length_1187_cov_26.717636:1-1187 changes to pilon.changes [pilon] Writing updated NODE_1685_length_1187_cov_26.717636_pilon to pilon.fasta [pilon] Writing NODE_1686_length_1187_cov_6.130394:1-1187 changes to pilon.changes [pilon] Writing updated NODE_1686_length_1187_cov_6.130394_pilon to pilon.fasta [pilon] Writing NODE_1687_length_1187_cov_2.838649:1-1187 changes to pilon.changes [pilon] Writing updated NODE_1687_length_1187_cov_2.838649_pilon to pilon.fasta [pilon] Writing NODE_1688_length_1186_cov_35.432864:1-1186 changes to pilon.changes [pilon] Writing updated NODE_1688_length_1186_cov_35.432864_pilon to pilon.fasta [pilon] Writing NODE_1689_length_1186_cov_32.224413:1-1186 changes to pilon.changes [pilon] Writing updated NODE_1689_length_1186_cov_32.224413_pilon to pilon.fasta [pilon] Writing NODE_1690_length_1185_cov_29.837406:1-1185 changes to pilon.changes [pilon] Writing updated NODE_1690_length_1185_cov_29.837406_pilon to pilon.fasta [pilon] Writing NODE_1691_length_1185_cov_24.116541:1-1185 changes to pilon.changes [pilon] Writing updated NODE_1691_length_1185_cov_24.116541_pilon to pilon.fasta [pilon] Writing NODE_1692_length_1185_cov_3.912594:1-1185 changes to pilon.changes [pilon] Writing updated NODE_1692_length_1185_cov_3.912594_pilon to pilon.fasta [pilon] Writing NODE_1693_length_1184_cov_22.500470:1-1184 changes to pilon.changes [pilon] Writing updated NODE_1693_length_1184_cov_22.500470_pilon to pilon.fasta [pilon] Writing NODE_1694_length_1184_cov_1.931326:1-1184 changes to pilon.changes [pilon] Writing updated NODE_1694_length_1184_cov_1.931326_pilon to pilon.fasta [pilon] Writing NODE_1695_length_1182_cov_15.573044:1-1182 changes to pilon.changes [pilon] Writing updated NODE_1695_length_1182_cov_15.573044_pilon to pilon.fasta [pilon] Writing NODE_1696_length_1181_cov_23.045283:1-1181 changes to pilon.changes [pilon] Writing updated NODE_1696_length_1181_cov_23.045283_pilon to pilon.fasta [pilon] Writing NODE_1697_length_1181_cov_2.200943:1-1181 changes to pilon.changes [pilon] Writing updated NODE_1697_length_1181_cov_2.200943_pilon to pilon.fasta [pilon] Writing NODE_1698_length_1180_cov_23.690274:1-1180 changes to pilon.changes [pilon] Writing updated NODE_1698_length_1180_cov_23.690274_pilon to pilon.fasta [pilon] Writing NODE_1699_length_1180_cov_14.237960:1-1180 changes to pilon.changes [pilon] Writing updated NODE_1699_length_1180_cov_14.237960_pilon to pilon.fasta [pilon] Writing NODE_1700_length_1179_cov_21.557656:1-1179 changes to pilon.changes [pilon] Writing updated NODE_1700_length_1179_cov_21.557656_pilon to pilon.fasta [pilon] Writing NODE_1701_length_1179_cov_15.692817:1-1179 changes to pilon.changes [pilon] Writing updated NODE_1701_length_1179_cov_15.692817_pilon to pilon.fasta [pilon] Writing NODE_1702_length_1179_cov_11.690926:1-1179 changes to pilon.changes [pilon] Writing updated NODE_1702_length_1179_cov_11.690926_pilon to pilon.fasta [pilon] Writing NODE_1703_length_1179_cov_2.734405:1-1179 changes to pilon.changes [pilon] Writing updated NODE_1703_length_1179_cov_2.734405_pilon to pilon.fasta [pilon] Writing NODE_1704_length_1179_cov_1.943289:1-1179 changes to pilon.changes [pilon] Writing updated NODE_1704_length_1179_cov_1.943289_pilon to pilon.fasta [pilon] Writing NODE_1705_length_1178_cov_22.210974:1-1178 changes to pilon.changes [pilon] Writing updated NODE_1705_length_1178_cov_22.210974_pilon to pilon.fasta [pilon] Writing NODE_1706_length_1178_cov_15.982971:1-1178 changes to pilon.changes [pilon] Writing updated NODE_1706_length_1178_cov_15.982971_pilon to pilon.fasta [pilon] Writing NODE_1707_length_1178_cov_2.750237:1-1178 changes to pilon.changes [pilon] Writing updated NODE_1707_length_1178_cov_2.750237_pilon to pilon.fasta [pilon] Writing NODE_1708_length_1178_cov_2.294229:1-1178 changes to pilon.changes [pilon] Writing updated NODE_1708_length_1178_cov_2.294229_pilon to pilon.fasta [pilon] Writing NODE_1709_length_1178_cov_1.922422:1-1178 changes to pilon.changes [pilon] Writing updated NODE_1709_length_1178_cov_1.922422_pilon to pilon.fasta [pilon] Writing NODE_1710_length_1178_cov_1.652791:1-1178 changes to pilon.changes [pilon] Writing updated NODE_1710_length_1178_cov_1.652791_pilon to pilon.fasta [pilon] Writing NODE_1711_length_1177_cov_22.296402:1-1177 changes to pilon.changes [pilon] Writing updated NODE_1711_length_1177_cov_22.296402_pilon to pilon.fasta [pilon] Writing NODE_1712_length_1177_cov_18.762311:1-1177 changes to pilon.changes [pilon] Writing updated NODE_1712_length_1177_cov_18.762311_pilon to pilon.fasta [pilon] Writing NODE_1713_length_1177_cov_17.333333:1-1177 changes to pilon.changes [pilon] Writing updated NODE_1713_length_1177_cov_17.333333_pilon to pilon.fasta [pilon] Writing NODE_1714_length_1176_cov_27.667299:1-1176 changes to pilon.changes [pilon] Writing updated NODE_1714_length_1176_cov_27.667299_pilon to pilon.fasta [pilon] Writing NODE_1715_length_1176_cov_2.304265:1-1176 changes to pilon.changes [pilon] Writing updated NODE_1715_length_1176_cov_2.304265_pilon to pilon.fasta [pilon] Writing NODE_1716_length_1175_cov_18.527514:1-1175 changes to pilon.changes [pilon] Writing updated NODE_1716_length_1175_cov_18.527514_pilon to pilon.fasta [pilon] Writing NODE_1717_length_1175_cov_7.634725:1-1175 changes to pilon.changes [pilon] Writing updated NODE_1717_length_1175_cov_7.634725_pilon to pilon.fasta [pilon] Writing NODE_1718_length_1174_cov_32.245964:1-1174 changes to pilon.changes [pilon] Writing updated NODE_1718_length_1174_cov_32.245964_pilon to pilon.fasta [pilon] Writing NODE_1719_length_1174_cov_17.713200:1-1174 changes to pilon.changes [pilon] Writing updated NODE_1719_length_1174_cov_17.713200_pilon to pilon.fasta [pilon] Writing NODE_1720_length_1173_cov_39.631179:1-1173 changes to pilon.changes [pilon] Writing updated NODE_1720_length_1173_cov_39.631179_pilon to pilon.fasta [pilon] Writing NODE_1721_length_1173_cov_1.827947:1-1173 changes to pilon.changes [pilon] Writing updated NODE_1721_length_1173_cov_1.827947_pilon to pilon.fasta [pilon] Writing NODE_1722_length_1172_cov_23.929591:1-1172 changes to pilon.changes [pilon] Writing updated NODE_1722_length_1172_cov_23.929591_pilon to pilon.fasta [pilon] Writing NODE_1723_length_1172_cov_17.700285:1-1172 changes to pilon.changes [pilon] Writing updated NODE_1723_length_1172_cov_17.700285_pilon to pilon.fasta [pilon] Writing NODE_1724_length_1172_cov_2.562322:1-1172 changes to pilon.changes [pilon] Writing updated NODE_1724_length_1172_cov_2.562322_pilon to pilon.fasta [pilon] Writing NODE_1725_length_1171_cov_20.661905:1-1171 changes to pilon.changes [pilon] Writing updated NODE_1725_length_1171_cov_20.661905_pilon to pilon.fasta [pilon] Writing NODE_1726_length_1171_cov_19.839048:1-1171 changes to pilon.changes [pilon] Writing updated NODE_1726_length_1171_cov_19.839048_pilon to pilon.fasta [pilon] Writing NODE_1727_length_1171_cov_3.029524:1-1171 changes to pilon.changes [pilon] Writing updated NODE_1727_length_1171_cov_3.029524_pilon to pilon.fasta [pilon] Writing NODE_1728_length_1171_cov_2.086667:1-1171 changes to pilon.changes [pilon] Writing updated NODE_1728_length_1171_cov_2.086667_pilon to pilon.fasta [pilon] Writing NODE_1729_length_1170_cov_26.571020:1-1170 changes to pilon.changes [pilon] Writing updated NODE_1729_length_1170_cov_26.571020_pilon to pilon.fasta [pilon] Writing NODE_1730_length_1170_cov_25.853194:1-1170 changes to pilon.changes [pilon] Writing updated NODE_1730_length_1170_cov_25.853194_pilon to pilon.fasta [pilon] Writing NODE_1731_length_1169_cov_9.497137:1-1169 changes to pilon.changes [pilon] Writing updated NODE_1731_length_1169_cov_9.497137_pilon to pilon.fasta [pilon] Writing NODE_1732_length_1169_cov_8.144084:1-1169 changes to pilon.changes [pilon] Writing updated NODE_1732_length_1169_cov_8.144084_pilon to pilon.fasta [pilon] Writing NODE_1733_length_1169_cov_2.956107:1-1169 changes to pilon.changes [pilon] Writing updated NODE_1733_length_1169_cov_2.956107_pilon to pilon.fasta [pilon] Writing NODE_1734_length_1169_cov_2.709924:1-1169 changes to pilon.changes [pilon] Writing updated NODE_1734_length_1169_cov_2.709924_pilon to pilon.fasta [pilon] Writing NODE_1735_length_1168_cov_19.513849:1-1168 changes to pilon.changes [pilon] Writing updated NODE_1735_length_1168_cov_19.513849_pilon to pilon.fasta [pilon] Writing NODE_1736_length_1167_cov_24.129063:1-1167 changes to pilon.changes [pilon] Writing updated NODE_1736_length_1167_cov_24.129063_pilon to pilon.fasta [pilon] Writing NODE_1737_length_1167_cov_2.779159:1-1167 changes to pilon.changes [pilon] Writing updated NODE_1737_length_1167_cov_2.779159_pilon to pilon.fasta [pilon] Writing NODE_1738_length_1167_cov_1.651052:1-1167 changes to pilon.changes [pilon] Writing updated NODE_1738_length_1167_cov_1.651052_pilon to pilon.fasta [pilon] Writing NODE_1739_length_1166_cov_20.347368:1-1166 changes to pilon.changes [pilon] Writing updated NODE_1739_length_1166_cov_20.347368_pilon to pilon.fasta [pilon] Writing NODE_1740_length_1164_cov_18.877277:1-1164 changes to pilon.changes [pilon] Writing updated NODE_1740_length_1164_cov_18.877277_pilon to pilon.fasta [pilon] Writing NODE_1741_length_1163_cov_31.895393:1-1163 changes to pilon.changes [pilon] Writing updated NODE_1741_length_1163_cov_31.895393_pilon to pilon.fasta [pilon] Writing NODE_1742_length_1163_cov_24.049904:1-1163 changes to pilon.changes [pilon] Writing updated NODE_1742_length_1163_cov_24.049904_pilon to pilon.fasta [pilon] Writing NODE_1743_length_1163_cov_15.144914:1-1163 changes to pilon.changes [pilon] Writing updated NODE_1743_length_1163_cov_15.144914_pilon to pilon.fasta [pilon] Writing NODE_1744_length_1163_cov_13.162188:1-1163 changes to pilon.changes [pilon] Writing updated NODE_1744_length_1163_cov_13.162188_pilon to pilon.fasta [pilon] Writing NODE_1745_length_1163_cov_3.373321:1-1163 changes to pilon.changes [pilon] Writing updated NODE_1745_length_1163_cov_3.373321_pilon to pilon.fasta [pilon] Writing NODE_1746_length_1162_cov_5.542747:1-1162 changes to pilon.changes [pilon] Writing updated NODE_1746_length_1162_cov_5.542747_pilon to pilon.fasta [pilon] Writing NODE_1747_length_1162_cov_2.176753:1-1162 changes to pilon.changes [pilon] Writing updated NODE_1747_length_1162_cov_2.176753_pilon to pilon.fasta [pilon] Writing NODE_1748_length_1160_cov_31.331088:1-1160 changes to pilon.changes [pilon] Writing updated NODE_1748_length_1160_cov_31.331088_pilon to pilon.fasta [pilon] Writing NODE_1749_length_1160_cov_22.734360:1-1160 changes to pilon.changes [pilon] Writing updated NODE_1749_length_1160_cov_22.734360_pilon to pilon.fasta [pilon] Writing NODE_1750_length_1160_cov_22.007700:1-1160 changes to pilon.changes [pilon] Writing updated NODE_1750_length_1160_cov_22.007700_pilon to pilon.fasta [pilon] Writing NODE_1751_length_1160_cov_3.539942:1-1160 changes to pilon.changes [pilon] Writing updated NODE_1751_length_1160_cov_3.539942_pilon to pilon.fasta [pilon] Writing NODE_1752_length_1160_cov_2.905679:1-1160 changes to pilon.changes [pilon] Writing updated NODE_1752_length_1160_cov_2.905679_pilon to pilon.fasta [pilon] Writing NODE_1753_length_1159_cov_13.820809:1-1159 changes to pilon.changes [pilon] Writing updated NODE_1753_length_1159_cov_13.820809_pilon to pilon.fasta [pilon] Writing NODE_1754_length_1159_cov_10.711946:1-1159 changes to pilon.changes [pilon] Writing updated NODE_1754_length_1159_cov_10.711946_pilon to pilon.fasta [pilon] Writing NODE_1755_length_1159_cov_2.101156:1-1159 changes to pilon.changes [pilon] Writing updated NODE_1755_length_1159_cov_2.101156_pilon to pilon.fasta [pilon] Writing NODE_1756_length_1158_cov_35.212150:1-1158 changes to pilon.changes [pilon] Writing updated NODE_1756_length_1158_cov_35.212150_pilon to pilon.fasta [pilon] Writing NODE_1757_length_1158_cov_19.464802:1-1158 changes to pilon.changes [pilon] Writing updated NODE_1757_length_1158_cov_19.464802_pilon to pilon.fasta [pilon] Writing NODE_1758_length_1158_cov_17.574735:1-1158 changes to pilon.changes [pilon] Writing updated NODE_1758_length_1158_cov_17.574735_pilon to pilon.fasta [pilon] Writing NODE_1759_length_1158_cov_6.791707:1-1158 changes to pilon.changes [pilon] Writing updated NODE_1759_length_1158_cov_6.791707_pilon to pilon.fasta [pilon] Writing NODE_1760_length_1158_cov_6.474446:1-1158 changes to pilon.changes [pilon] Writing updated NODE_1760_length_1158_cov_6.474446_pilon to pilon.fasta [pilon] Writing NODE_1761_length_1158_cov_2.027001:1-1158 changes to pilon.changes [pilon] Writing updated NODE_1761_length_1158_cov_2.027001_pilon to pilon.fasta [pilon] Writing NODE_1762_length_1157_cov_34.956564:1-1157 changes to pilon.changes [pilon] Writing updated NODE_1762_length_1157_cov_34.956564_pilon to pilon.fasta [pilon] Writing NODE_1763_length_1157_cov_30.654440:1-1157 changes to pilon.changes [pilon] Writing updated NODE_1763_length_1157_cov_30.654440_pilon to pilon.fasta [pilon] Writing NODE_1764_length_1157_cov_19.183398:1-1157 changes to pilon.changes [pilon] Writing updated NODE_1764_length_1157_cov_19.183398_pilon to pilon.fasta [pilon] Writing NODE_1765_length_1157_cov_4.578185:1-1157 changes to pilon.changes [pilon] Writing updated NODE_1765_length_1157_cov_4.578185_pilon to pilon.fasta [pilon] Writing NODE_1766_length_1157_cov_4.001931:1-1157 changes to pilon.changes [pilon] Writing updated NODE_1766_length_1157_cov_4.001931_pilon to pilon.fasta [pilon] Writing NODE_1767_length_1156_cov_13.199034:1-1156 changes to pilon.changes [pilon] Writing updated NODE_1767_length_1156_cov_13.199034_pilon to pilon.fasta [pilon] Writing NODE_1768_length_1156_cov_2.339130:1-1156 changes to pilon.changes [pilon] Writing updated NODE_1768_length_1156_cov_2.339130_pilon to pilon.fasta [pilon] Writing NODE_1769_length_1156_cov_1.185507:1-1156 changes to pilon.changes [pilon] Writing updated NODE_1769_length_1156_cov_1.185507_pilon to pilon.fasta [pilon] Writing NODE_1770_length_1155_cov_33.293037:1-1155 changes to pilon.changes [pilon] Writing updated NODE_1770_length_1155_cov_33.293037_pilon to pilon.fasta [pilon] Writing NODE_1771_length_1155_cov_23.086074:1-1155 changes to pilon.changes [pilon] Writing updated NODE_1771_length_1155_cov_23.086074_pilon to pilon.fasta [pilon] Writing NODE_1772_length_1155_cov_14.903288:1-1155 changes to pilon.changes [pilon] Writing updated NODE_1772_length_1155_cov_14.903288_pilon to pilon.fasta [pilon] Writing NODE_1773_length_1155_cov_6.581238:1-1155 changes to pilon.changes [pilon] Writing updated NODE_1773_length_1155_cov_6.581238_pilon to pilon.fasta [pilon] Writing NODE_1774_length_1154_cov_51.313650:1-1154 changes to pilon.changes [pilon] Writing updated NODE_1774_length_1154_cov_51.313650_pilon to pilon.fasta [pilon] Writing NODE_1775_length_1154_cov_49.160697:1-1154 changes to pilon.changes [pilon] Writing updated NODE_1775_length_1154_cov_49.160697_pilon to pilon.fasta [pilon] Writing NODE_1776_length_1154_cov_12.479187:1-1154 changes to pilon.changes [pilon] Writing updated NODE_1776_length_1154_cov_12.479187_pilon to pilon.fasta [pilon] Writing NODE_1777_length_1154_cov_11.997096:1-1154 changes to pilon.changes [pilon] Writing updated NODE_1777_length_1154_cov_11.997096_pilon to pilon.fasta [pilon] Writing NODE_1778_length_1154_cov_1.629235:1-1154 changes to pilon.changes [pilon] Writing updated NODE_1778_length_1154_cov_1.629235_pilon to pilon.fasta [pilon] Writing NODE_1779_length_1153_cov_34.413760:1-1153 changes to pilon.changes [pilon] Writing updated NODE_1779_length_1153_cov_34.413760_pilon to pilon.fasta [pilon] Writing NODE_1780_length_1153_cov_11.762597:1-1153 changes to pilon.changes [pilon] Writing updated NODE_1780_length_1153_cov_11.762597_pilon to pilon.fasta [pilon] Writing NODE_1781_length_1153_cov_11.556202:1-1153 changes to pilon.changes [pilon] Writing updated NODE_1781_length_1153_cov_11.556202_pilon to pilon.fasta [pilon] Writing NODE_1782_length_1153_cov_1.172481:1-1153 changes to pilon.changes [pilon] Writing updated NODE_1782_length_1153_cov_1.172481_pilon to pilon.fasta [pilon] Writing NODE_1783_length_1152_cov_17.016489:1-1152 changes to pilon.changes [pilon] Writing updated NODE_1783_length_1152_cov_17.016489_pilon to pilon.fasta [pilon] Writing NODE_1784_length_1152_cov_16.392823:1-1152 changes to pilon.changes [pilon] Writing updated NODE_1784_length_1152_cov_16.392823_pilon to pilon.fasta [pilon] Writing NODE_1785_length_1152_cov_3.040737:1-1152 changes to pilon.changes [pilon] Writing updated NODE_1785_length_1152_cov_3.040737_pilon to pilon.fasta [pilon] Writing NODE_1786_length_1151_cov_22.698058:1-1151 changes to pilon.changes [pilon] Writing updated NODE_1786_length_1151_cov_22.698058_pilon to pilon.fasta [pilon] Writing NODE_1787_length_1151_cov_20.908738:1-1151 changes to pilon.changes [pilon] Writing updated NODE_1787_length_1151_cov_20.908738_pilon to pilon.fasta [pilon] Writing NODE_1788_length_1150_cov_33.827988:1-1150 changes to pilon.changes [pilon] Writing updated NODE_1788_length_1150_cov_33.827988_pilon to pilon.fasta [pilon] Writing NODE_1789_length_1150_cov_28.561710:1-1150 changes to pilon.changes [pilon] Writing updated NODE_1789_length_1150_cov_28.561710_pilon to pilon.fasta [pilon] Writing NODE_1790_length_1150_cov_21.126336:1-1150 changes to pilon.changes [pilon] Writing updated NODE_1790_length_1150_cov_21.126336_pilon to pilon.fasta [pilon] Writing NODE_1791_length_1150_cov_0.913508:1-1150 changes to pilon.changes [pilon] Writing updated NODE_1791_length_1150_cov_0.913508_pilon to pilon.fasta [pilon] Writing NODE_1792_length_1149_cov_52.300584:1-1149 changes to pilon.changes [pilon] Writing updated NODE_1792_length_1149_cov_52.300584_pilon to pilon.fasta [pilon] Writing NODE_1793_length_1148_cov_16.812074:1-1148 changes to pilon.changes [pilon] Writing updated NODE_1793_length_1148_cov_16.812074_pilon to pilon.fasta [pilon] Writing NODE_1794_length_1148_cov_3.334956:1-1148 changes to pilon.changes [pilon] Writing updated NODE_1794_length_1148_cov_3.334956_pilon to pilon.fasta [pilon] Writing NODE_1795_length_1148_cov_2.642648:1-1148 changes to pilon.changes [pilon] Writing updated NODE_1795_length_1148_cov_2.642648_pilon to pilon.fasta [pilon] Writing NODE_1796_length_1148_cov_1.700097:1-1148 changes to pilon.changes [pilon] Writing updated NODE_1796_length_1148_cov_1.700097_pilon to pilon.fasta [pilon] Writing NODE_1797_length_1147_cov_27.473684:1-1147 changes to pilon.changes [pilon] Writing updated NODE_1797_length_1147_cov_27.473684_pilon to pilon.fasta [pilon] Writing NODE_1798_length_1147_cov_18.753411:1-1147 changes to pilon.changes [pilon] Writing updated NODE_1798_length_1147_cov_18.753411_pilon to pilon.fasta [pilon] Writing NODE_1799_length_1146_cov_33.501463:1-1146 changes to pilon.changes [pilon] Writing updated NODE_1799_length_1146_cov_33.501463_pilon to pilon.fasta [pilon] Writing NODE_1800_length_1146_cov_28.382439:1-1146 changes to pilon.changes [pilon] Writing updated NODE_1800_length_1146_cov_28.382439_pilon to pilon.fasta [pilon] Writing NODE_1801_length_1146_cov_24.231220:1-1146 changes to pilon.changes [pilon] Writing updated NODE_1801_length_1146_cov_24.231220_pilon to pilon.fasta [pilon] Writing NODE_1802_length_1146_cov_18.736585:1-1146 changes to pilon.changes [pilon] Writing updated NODE_1802_length_1146_cov_18.736585_pilon to pilon.fasta [pilon] Writing NODE_1803_length_1146_cov_15.955122:1-1146 changes to pilon.changes [pilon] Writing updated NODE_1803_length_1146_cov_15.955122_pilon to pilon.fasta [pilon] Writing NODE_1804_length_1146_cov_4.628293:1-1146 changes to pilon.changes [pilon] Writing updated NODE_1804_length_1146_cov_4.628293_pilon to pilon.fasta [pilon] Writing NODE_1805_length_1146_cov_2.867317:1-1146 changes to pilon.changes [pilon] Writing updated NODE_1805_length_1146_cov_2.867317_pilon to pilon.fasta [pilon] Writing NODE_1806_length_1145_cov_14.747070:1-1145 changes to pilon.changes [pilon] Writing updated NODE_1806_length_1145_cov_14.747070_pilon to pilon.fasta [pilon] Writing NODE_1807_length_1145_cov_4.465820:1-1145 changes to pilon.changes [pilon] Writing updated NODE_1807_length_1145_cov_4.465820_pilon to pilon.fasta [pilon] Writing NODE_1808_length_1144_cov_32.172043:1-1144 changes to pilon.changes [pilon] Writing updated NODE_1808_length_1144_cov_32.172043_pilon to pilon.fasta [pilon] Writing NODE_1809_length_1144_cov_31.307918:1-1144 changes to pilon.changes [pilon] Writing updated NODE_1809_length_1144_cov_31.307918_pilon to pilon.fasta [pilon] Writing NODE_1810_length_1144_cov_23.996090:1-1144 changes to pilon.changes [pilon] Writing updated NODE_1810_length_1144_cov_23.996090_pilon to pilon.fasta [pilon] Writing NODE_1811_length_1144_cov_15.229717:1-1144 changes to pilon.changes [pilon] Writing updated NODE_1811_length_1144_cov_15.229717_pilon to pilon.fasta [pilon] Writing NODE_1812_length_1144_cov_14.524927:1-1144 changes to pilon.changes [pilon] Writing updated NODE_1812_length_1144_cov_14.524927_pilon to pilon.fasta [pilon] Writing NODE_1813_length_1144_cov_2.362659:1-1144 changes to pilon.changes [pilon] Writing updated NODE_1813_length_1144_cov_2.362659_pilon to pilon.fasta [pilon] Writing NODE_1814_length_1143_cov_23.095890:1-1143 changes to pilon.changes [pilon] Writing updated NODE_1814_length_1143_cov_23.095890_pilon to pilon.fasta [pilon] Writing NODE_1815_length_1143_cov_2.404110:1-1143 changes to pilon.changes [pilon] Writing updated NODE_1815_length_1143_cov_2.404110_pilon to pilon.fasta [pilon] Writing NODE_1816_length_1142_cov_1.693438:1-1142 changes to pilon.changes [pilon] Writing updated NODE_1816_length_1142_cov_1.693438_pilon to pilon.fasta [pilon] Writing NODE_1817_length_1141_cov_16.300980:1-1141 changes to pilon.changes [pilon] Writing updated NODE_1817_length_1141_cov_16.300980_pilon to pilon.fasta [pilon] Writing NODE_1818_length_1141_cov_2.748039:1-1141 changes to pilon.changes [pilon] Writing updated NODE_1818_length_1141_cov_2.748039_pilon to pilon.fasta [pilon] Writing NODE_1819_length_1140_cov_15.239450:1-1140 changes to pilon.changes [pilon] Writing updated NODE_1819_length_1140_cov_15.239450_pilon to pilon.fasta [pilon] Writing NODE_1820_length_1139_cov_27.068762:1-1139 changes to pilon.changes [pilon] Writing updated NODE_1820_length_1139_cov_27.068762_pilon to pilon.fasta [pilon] Writing NODE_1821_length_1138_cov_39.862340:1-1138 changes to pilon.changes [pilon] Writing updated NODE_1821_length_1138_cov_39.862340_pilon to pilon.fasta [pilon] Writing NODE_1822_length_1138_cov_18.588004:1-1138 changes to pilon.changes [pilon] Writing updated NODE_1822_length_1138_cov_18.588004_pilon to pilon.fasta [pilon] Writing NODE_1823_length_1137_cov_28.084646:1-1137 changes to pilon.changes [pilon] Writing updated NODE_1823_length_1137_cov_28.084646_pilon to pilon.fasta [pilon] Writing NODE_1824_length_1137_cov_15.626969:1-1137 changes to pilon.changes [pilon] Writing updated NODE_1824_length_1137_cov_15.626969_pilon to pilon.fasta [pilon] Writing NODE_1825_length_1137_cov_3.534449:1-1137 changes to pilon.changes [pilon] Writing updated NODE_1825_length_1137_cov_3.534449_pilon to pilon.fasta [pilon] Writing NODE_1826_length_1136_cov_8.888670:1-1136 changes to pilon.changes [pilon] Writing updated NODE_1826_length_1136_cov_8.888670_pilon to pilon.fasta [pilon] Writing NODE_1827_length_1136_cov_3.154680:1-1136 changes to pilon.changes [pilon] Writing updated NODE_1827_length_1136_cov_3.154680_pilon to pilon.fasta [pilon] Writing NODE_1828_length_1135_cov_14.869822:1-1135 changes to pilon.changes [pilon] Writing updated NODE_1828_length_1135_cov_14.869822_pilon to pilon.fasta [pilon] Writing NODE_1829_length_1135_cov_12.351085:1-1135 changes to pilon.changes [pilon] Writing updated NODE_1829_length_1135_cov_12.351085_pilon to pilon.fasta [pilon] Writing NODE_1830_length_1135_cov_2.524655:1-1135 changes to pilon.changes [pilon] Writing updated NODE_1830_length_1135_cov_2.524655_pilon to pilon.fasta [pilon] Writing NODE_1831_length_1134_cov_39.017769:1-1134 changes to pilon.changes [pilon] Writing updated NODE_1831_length_1134_cov_39.017769_pilon to pilon.fasta [pilon] Writing NODE_1832_length_1134_cov_15.560711:1-1134 changes to pilon.changes [pilon] Writing updated NODE_1832_length_1134_cov_15.560711_pilon to pilon.fasta [pilon] Writing NODE_1833_length_1134_cov_1.973346:1-1134 changes to pilon.changes [pilon] Writing updated NODE_1833_length_1134_cov_1.973346_pilon to pilon.fasta [pilon] Writing NODE_1834_length_1133_cov_25.880435:1-1133 changes to pilon.changes [pilon] Writing updated NODE_1834_length_1133_cov_25.880435_pilon to pilon.fasta [pilon] Writing NODE_1835_length_1133_cov_20.865613:1-1133 changes to pilon.changes [pilon] Writing updated NODE_1835_length_1133_cov_20.865613_pilon to pilon.fasta [pilon] Writing NODE_1836_length_1133_cov_17.398221:1-1133 changes to pilon.changes [pilon] Writing updated NODE_1836_length_1133_cov_17.398221_pilon to pilon.fasta [pilon] Writing NODE_1837_length_1133_cov_2.783597:1-1133 changes to pilon.changes [pilon] Writing updated NODE_1837_length_1133_cov_2.783597_pilon to pilon.fasta [pilon] Writing NODE_1838_length_1133_cov_0.596838:1-1133 changes to pilon.changes [pilon] Writing updated NODE_1838_length_1133_cov_0.596838_pilon to pilon.fasta [pilon] Writing NODE_1839_length_1132_cov_42.265084:1-1132 changes to pilon.changes [pilon] Writing updated NODE_1839_length_1132_cov_42.265084_pilon to pilon.fasta [pilon] Writing NODE_1840_length_1132_cov_26.822948:1-1132 changes to pilon.changes [pilon] Writing updated NODE_1840_length_1132_cov_26.822948_pilon to pilon.fasta [pilon] Writing NODE_1841_length_1132_cov_21.156281:1-1132 changes to pilon.changes [pilon] Writing updated NODE_1841_length_1132_cov_21.156281_pilon to pilon.fasta [pilon] Writing NODE_1842_length_1132_cov_20.574679:1-1132 changes to pilon.changes [pilon] Writing updated NODE_1842_length_1132_cov_20.574679_pilon to pilon.fasta [pilon] Writing NODE_1843_length_1132_cov_10.526212:1-1132 changes to pilon.changes [pilon] Writing updated NODE_1843_length_1132_cov_10.526212_pilon to pilon.fasta [pilon] Writing NODE_1844_length_1131_cov_33.342574:1-1131 changes to pilon.changes [pilon] Writing updated NODE_1844_length_1131_cov_33.342574_pilon to pilon.fasta [pilon] Writing NODE_1845_length_1131_cov_23.016832:1-1131 changes to pilon.changes [pilon] Writing updated NODE_1845_length_1131_cov_23.016832_pilon to pilon.fasta [pilon] Writing NODE_1846_length_1130_cov_30.172448:1-1130 changes to pilon.changes [pilon] Writing updated NODE_1846_length_1130_cov_30.172448_pilon to pilon.fasta [pilon] Writing NODE_1847_length_1130_cov_10.910803:1-1130 changes to pilon.changes [pilon] Writing updated NODE_1847_length_1130_cov_10.910803_pilon to pilon.fasta [pilon] Writing NODE_1848_length_1130_cov_1.241824:1-1130 changes to pilon.changes [pilon] Writing updated NODE_1848_length_1130_cov_1.241824_pilon to pilon.fasta [pilon] Writing NODE_1849_length_1129_cov_24.522817:1-1129 changes to pilon.changes [pilon] Writing updated NODE_1849_length_1129_cov_24.522817_pilon to pilon.fasta [pilon] Writing NODE_1850_length_1129_cov_3.302579:1-1129 changes to pilon.changes [pilon] Writing updated NODE_1850_length_1129_cov_3.302579_pilon to pilon.fasta [pilon] Writing NODE_1851_length_1129_cov_1.731151:1-1129 changes to pilon.changes [pilon] Writing updated NODE_1851_length_1129_cov_1.731151_pilon to pilon.fasta [pilon] Writing NODE_1852_length_1128_cov_1.691162:1-1128 changes to pilon.changes [pilon] Writing updated NODE_1852_length_1128_cov_1.691162_pilon to pilon.fasta [pilon] Writing NODE_1853_length_1128_cov_1.638530:1-1128 changes to pilon.changes [pilon] Writing updated NODE_1853_length_1128_cov_1.638530_pilon to pilon.fasta [pilon] Writing NODE_1854_length_1127_cov_24.256461:1-1127 changes to pilon.changes [pilon] Writing updated NODE_1854_length_1127_cov_24.256461_pilon to pilon.fasta [pilon] Writing NODE_1855_length_1127_cov_1.487078:1-1127 changes to pilon.changes [pilon] Writing updated NODE_1855_length_1127_cov_1.487078_pilon to pilon.fasta [pilon] Writing NODE_1856_length_1126_cov_35.100498:1-1126 changes to pilon.changes [pilon] Writing updated NODE_1856_length_1126_cov_35.100498_pilon to pilon.fasta [pilon] Writing NODE_1857_length_1126_cov_21.551244:1-1126 changes to pilon.changes [pilon] Writing updated NODE_1857_length_1126_cov_21.551244_pilon to pilon.fasta [pilon] Writing NODE_1858_length_1126_cov_18.808955:1-1126 changes to pilon.changes [pilon] Writing updated NODE_1858_length_1126_cov_18.808955_pilon to pilon.fasta [pilon] Writing NODE_1859_length_1126_cov_4.083582:1-1126 changes to pilon.changes [pilon] Writing updated NODE_1859_length_1126_cov_4.083582_pilon to pilon.fasta [pilon] Writing NODE_1860_length_1126_cov_3.175124:1-1126 changes to pilon.changes [pilon] Writing updated NODE_1860_length_1126_cov_3.175124_pilon to pilon.fasta [pilon] Writing NODE_1861_length_1126_cov_2.677612:1-1126 changes to pilon.changes [pilon] Writing updated NODE_1861_length_1126_cov_2.677612_pilon to pilon.fasta [pilon] Writing NODE_1862_length_1125_cov_31.161355:1-1125 changes to pilon.changes [pilon] Writing updated NODE_1862_length_1125_cov_31.161355_pilon to pilon.fasta [pilon] Writing NODE_1863_length_1125_cov_18.010956:1-1125 changes to pilon.changes [pilon] Writing updated NODE_1863_length_1125_cov_18.010956_pilon to pilon.fasta [pilon] Writing NODE_1864_length_1124_cov_29.927218:1-1124 changes to pilon.changes [pilon] Writing updated NODE_1864_length_1124_cov_29.927218_pilon to pilon.fasta [pilon] Writing NODE_1865_length_1123_cov_31.029940:1-1123 changes to pilon.changes [pilon] Writing updated NODE_1865_length_1123_cov_31.029940_pilon to pilon.fasta [pilon] Writing NODE_1866_length_1123_cov_20.943114:1-1123 changes to pilon.changes [pilon] Writing updated NODE_1866_length_1123_cov_20.943114_pilon to pilon.fasta [pilon] Writing NODE_1867_length_1122_cov_29.639361:1-1122 changes to pilon.changes [pilon] Writing updated NODE_1867_length_1122_cov_29.639361_pilon to pilon.fasta [pilon] Writing NODE_1868_length_1122_cov_2.730270:1-1122 changes to pilon.changes [pilon] Writing updated NODE_1868_length_1122_cov_2.730270_pilon to pilon.fasta [pilon] Writing NODE_1869_length_1122_cov_2.328671:1-1122 changes to pilon.changes [pilon] Writing updated NODE_1869_length_1122_cov_2.328671_pilon to pilon.fasta [pilon] Writing NODE_1870_length_1122_cov_1.932068:1-1122 changes to pilon.changes [pilon] Writing updated NODE_1870_length_1122_cov_1.932068_pilon to pilon.fasta [pilon] Writing NODE_1871_length_1121_cov_33.496000:1-1121 changes to pilon.changes [pilon] Writing updated NODE_1871_length_1121_cov_33.496000_pilon to pilon.fasta [pilon] Writing NODE_1872_length_1121_cov_26.069000:1-1121 changes to pilon.changes [pilon] Writing updated NODE_1872_length_1121_cov_26.069000_pilon to pilon.fasta [pilon] Writing NODE_1873_length_1121_cov_23.150000:1-1121 changes to pilon.changes [pilon] Writing updated NODE_1873_length_1121_cov_23.150000_pilon to pilon.fasta [pilon] Writing NODE_1874_length_1121_cov_12.978000:1-1121 changes to pilon.changes [pilon] Writing updated NODE_1874_length_1121_cov_12.978000_pilon to pilon.fasta [pilon] Writing NODE_1875_length_1121_cov_11.689000:1-1121 changes to pilon.changes [pilon] Writing updated NODE_1875_length_1121_cov_11.689000_pilon to pilon.fasta [pilon] Writing NODE_1876_length_1121_cov_1.550000:1-1121 changes to pilon.changes [pilon] Writing updated NODE_1876_length_1121_cov_1.550000_pilon to pilon.fasta [pilon] Writing NODE_1877_length_1120_cov_23.280280:1-1120 changes to pilon.changes [pilon] Writing updated NODE_1877_length_1120_cov_23.280280_pilon to pilon.fasta [pilon] Writing NODE_1878_length_1120_cov_3.629630:1-1120 changes to pilon.changes [pilon] Writing updated NODE_1878_length_1120_cov_3.629630_pilon to pilon.fasta [pilon] Writing NODE_1879_length_1120_cov_0.882883:1-1120 changes to pilon.changes [pilon] Writing updated NODE_1879_length_1120_cov_0.882883_pilon to pilon.fasta [pilon] Writing NODE_1880_length_1118_cov_40.758275:1-1118 changes to pilon.changes [pilon] Writing updated NODE_1880_length_1118_cov_40.758275_pilon to pilon.fasta [pilon] Writing NODE_1881_length_1118_cov_39.083250:1-1118 changes to pilon.changes [pilon] Writing updated NODE_1881_length_1118_cov_39.083250_pilon to pilon.fasta [pilon] Writing NODE_1882_length_1118_cov_25.177533:1-1118 changes to pilon.changes [pilon] Writing updated NODE_1882_length_1118_cov_25.177533_pilon to pilon.fasta [pilon] Writing NODE_1883_length_1118_cov_9.908726:1-1118 changes to pilon.changes [pilon] Writing updated NODE_1883_length_1118_cov_9.908726_pilon to pilon.fasta [pilon] Writing NODE_1884_length_1117_cov_36.825301:1-1117 changes to pilon.changes [pilon] Writing updated NODE_1884_length_1117_cov_36.825301_pilon to pilon.fasta [pilon] Writing NODE_1885_length_1117_cov_31.342369:1-1117 changes to pilon.changes [pilon] Writing updated NODE_1885_length_1117_cov_31.342369_pilon to pilon.fasta [pilon] Writing NODE_1886_length_1117_cov_29.266064:1-1117 changes to pilon.changes [pilon] Writing updated NODE_1886_length_1117_cov_29.266064_pilon to pilon.fasta [pilon] Writing NODE_1887_length_1116_cov_42.001005:1-1116 changes to pilon.changes [pilon] Writing updated NODE_1887_length_1116_cov_42.001005_pilon to pilon.fasta [pilon] Writing NODE_1888_length_1116_cov_28.358794:1-1116 changes to pilon.changes [pilon] Writing updated NODE_1888_length_1116_cov_28.358794_pilon to pilon.fasta [pilon] Writing NODE_1889_length_1116_cov_26.081407:1-1116 changes to pilon.changes [pilon] Writing updated NODE_1889_length_1116_cov_26.081407_pilon to pilon.fasta [pilon] Writing NODE_1890_length_1116_cov_17.222111:1-1116 changes to pilon.changes [pilon] Writing updated NODE_1890_length_1116_cov_17.222111_pilon to pilon.fasta [pilon] Writing NODE_1891_length_1116_cov_1.359799:1-1116 changes to pilon.changes [pilon] Writing updated NODE_1891_length_1116_cov_1.359799_pilon to pilon.fasta [pilon] Writing NODE_1892_length_1115_cov_40.134809:1-1115 changes to pilon.changes [pilon] Writing updated NODE_1892_length_1115_cov_40.134809_pilon to pilon.fasta [pilon] Writing NODE_1893_length_1115_cov_1.882294:1-1115 changes to pilon.changes [pilon] Writing updated NODE_1893_length_1115_cov_1.882294_pilon to pilon.fasta [pilon] Writing NODE_1894_length_1114_cov_41.383686:1-1114 changes to pilon.changes [pilon] Writing updated NODE_1894_length_1114_cov_41.383686_pilon to pilon.fasta [pilon] Writing NODE_1895_length_1114_cov_29.911380:1-1114 changes to pilon.changes [pilon] Writing updated NODE_1895_length_1114_cov_29.911380_pilon to pilon.fasta [pilon] Writing NODE_1896_length_1114_cov_22.548842:1-1114 changes to pilon.changes [pilon] Writing updated NODE_1896_length_1114_cov_22.548842_pilon to pilon.fasta [pilon] Writing NODE_1897_length_1114_cov_13.763343:1-1114 changes to pilon.changes [pilon] Writing updated NODE_1897_length_1114_cov_13.763343_pilon to pilon.fasta [pilon] Writing NODE_1898_length_1113_cov_36.739919:1-1113 changes to pilon.changes [pilon] Writing updated NODE_1898_length_1113_cov_36.739919_pilon to pilon.fasta [pilon] Writing NODE_1899_length_1113_cov_20.434476:1-1113 changes to pilon.changes [pilon] Writing updated NODE_1899_length_1113_cov_20.434476_pilon to pilon.fasta [pilon] Writing NODE_1900_length_1112_cov_45.384460:1-1112 changes to pilon.changes [pilon] Writing updated NODE_1900_length_1112_cov_45.384460_pilon to pilon.fasta [pilon] Writing NODE_1901_length_1112_cov_43.221998:1-1112 changes to pilon.changes [pilon] Writing updated NODE_1901_length_1112_cov_43.221998_pilon to pilon.fasta [pilon] Writing NODE_1902_length_1112_cov_16.564077:1-1112 changes to pilon.changes [pilon] Writing updated NODE_1902_length_1112_cov_16.564077_pilon to pilon.fasta [pilon] Writing NODE_1903_length_1112_cov_12.381433:1-1112 changes to pilon.changes [pilon] Writing updated NODE_1903_length_1112_cov_12.381433_pilon to pilon.fasta [pilon] Writing NODE_1904_length_1112_cov_2.624622:1-1112 changes to pilon.changes [pilon] Writing updated NODE_1904_length_1112_cov_2.624622_pilon to pilon.fasta [pilon] Writing NODE_1905_length_1111_cov_16.701010:1-1111 changes to pilon.changes [pilon] Writing updated NODE_1905_length_1111_cov_16.701010_pilon to pilon.fasta [pilon] Writing NODE_1906_length_1111_cov_6.140404:1-1111 changes to pilon.changes [pilon] Writing updated NODE_1906_length_1111_cov_6.140404_pilon to pilon.fasta [pilon] Writing NODE_1907_length_1110_cov_47.367037:1-1110 changes to pilon.changes [pilon] Writing updated NODE_1907_length_1110_cov_47.367037_pilon to pilon.fasta [pilon] Writing NODE_1908_length_1110_cov_28.263903:1-1110 changes to pilon.changes [pilon] Writing updated NODE_1908_length_1110_cov_28.263903_pilon to pilon.fasta [pilon] Writing NODE_1909_length_1110_cov_14.081901:1-1110 changes to pilon.changes [pilon] Writing updated NODE_1909_length_1110_cov_14.081901_pilon to pilon.fasta [pilon] Writing NODE_1910_length_1110_cov_9.422649:1-1110 changes to pilon.changes [pilon] Writing updated NODE_1910_length_1110_cov_9.422649_pilon to pilon.fasta [pilon] Writing NODE_1911_length_1110_cov_8.350859:1-1110 changes to pilon.changes [pilon] Writing updated NODE_1911_length_1110_cov_8.350859_pilon to pilon.fasta [pilon] Writing NODE_1912_length_1109_cov_41.102227:1-1109 changes to pilon.changes [pilon] Writing updated NODE_1912_length_1109_cov_41.102227_pilon to pilon.fasta [pilon] Writing NODE_1913_length_1109_cov_15.961538:1-1109 changes to pilon.changes [pilon] Writing updated NODE_1913_length_1109_cov_15.961538_pilon to pilon.fasta [pilon] Writing NODE_1914_length_1109_cov_1.943320:1-1109 changes to pilon.changes [pilon] Writing updated NODE_1914_length_1109_cov_1.943320_pilon to pilon.fasta [pilon] Writing NODE_1915_length_1108_cov_1.705167:1-1108 changes to pilon.changes [pilon] Writing updated NODE_1915_length_1108_cov_1.705167_pilon to pilon.fasta [pilon] Writing NODE_1916_length_1107_cov_14.504057:1-1107 changes to pilon.changes [pilon] Writing updated NODE_1916_length_1107_cov_14.504057_pilon to pilon.fasta [pilon] Writing NODE_1917_length_1107_cov_13.693712:1-1107 changes to pilon.changes [pilon] Writing updated NODE_1917_length_1107_cov_13.693712_pilon to pilon.fasta [pilon] Writing NODE_1918_length_1107_cov_12.237323:1-1107 changes to pilon.changes [pilon] Writing updated NODE_1918_length_1107_cov_12.237323_pilon to pilon.fasta [pilon] Writing NODE_1919_length_1107_cov_11.576065:1-1107 changes to pilon.changes [pilon] Writing updated NODE_1919_length_1107_cov_11.576065_pilon to pilon.fasta [pilon] Writing NODE_1920_length_1107_cov_1.265720:1-1107 changes to pilon.changes [pilon] Writing updated NODE_1920_length_1107_cov_1.265720_pilon to pilon.fasta [pilon] Writing NODE_1921_length_1106_cov_35.724873:1-1106 changes to pilon.changes [pilon] Writing updated NODE_1921_length_1106_cov_35.724873_pilon to pilon.fasta [pilon] Writing NODE_1922_length_1106_cov_29.632487:1-1106 changes to pilon.changes [pilon] Writing updated NODE_1922_length_1106_cov_29.632487_pilon to pilon.fasta [pilon] Writing NODE_1923_length_1106_cov_18.587817:1-1106 changes to pilon.changes [pilon] Writing updated NODE_1923_length_1106_cov_18.587817_pilon to pilon.fasta [pilon] Writing NODE_1924_length_1106_cov_4.759391:1-1106 changes to pilon.changes [pilon] Writing updated NODE_1924_length_1106_cov_4.759391_pilon to pilon.fasta [pilon] Writing NODE_1925_length_1105_cov_26.859756:1-1105 changes to pilon.changes [pilon] Writing updated NODE_1925_length_1105_cov_26.859756_pilon to pilon.fasta [pilon] Writing NODE_1926_length_1105_cov_2.685976:1-1105 changes to pilon.changes [pilon] Writing updated NODE_1926_length_1105_cov_2.685976_pilon to pilon.fasta [pilon] Writing NODE_1927_length_1104_cov_27.935910:1-1104 changes to pilon.changes [pilon] Writing updated NODE_1927_length_1104_cov_27.935910_pilon to pilon.fasta [pilon] Writing NODE_1928_length_1104_cov_24.482197:1-1104 changes to pilon.changes [pilon] Writing updated NODE_1928_length_1104_cov_24.482197_pilon to pilon.fasta [pilon] Writing NODE_1929_length_1104_cov_1.584944:1-1104 changes to pilon.changes [pilon] Writing updated NODE_1929_length_1104_cov_1.584944_pilon to pilon.fasta [pilon] Writing NODE_1930_length_1103_cov_42.495927:1-1103 changes to pilon.changes [pilon] Writing updated NODE_1930_length_1103_cov_42.495927_pilon to pilon.fasta [pilon] Writing NODE_1931_length_1103_cov_23.278004:1-1103 changes to pilon.changes [pilon] Writing updated NODE_1931_length_1103_cov_23.278004_pilon to pilon.fasta [pilon] Writing NODE_1932_length_1103_cov_3.058045:1-1103 changes to pilon.changes [pilon] Writing updated NODE_1932_length_1103_cov_3.058045_pilon to pilon.fasta [pilon] Writing NODE_1933_length_1102_cov_30.997961:1-1102 changes to pilon.changes [pilon] Writing updated NODE_1933_length_1102_cov_30.997961_pilon to pilon.fasta [pilon] Writing NODE_1934_length_1102_cov_2.221203:1-1102 changes to pilon.changes [pilon] Writing updated NODE_1934_length_1102_cov_2.221203_pilon to pilon.fasta [pilon] Writing NODE_1935_length_1102_cov_1.765545:1-1102 changes to pilon.changes [pilon] Writing updated NODE_1935_length_1102_cov_1.765545_pilon to pilon.fasta [pilon] Writing NODE_1936_length_1102_cov_1.154944:1-1102 changes to pilon.changes [pilon] Writing updated NODE_1936_length_1102_cov_1.154944_pilon to pilon.fasta [pilon] Writing NODE_1937_length_1101_cov_43.197959:1-1101 changes to pilon.changes [pilon] Writing updated NODE_1937_length_1101_cov_43.197959_pilon to pilon.fasta [pilon] Writing NODE_1938_length_1101_cov_23.133673:1-1101 changes to pilon.changes [pilon] Writing updated NODE_1938_length_1101_cov_23.133673_pilon to pilon.fasta [pilon] Writing NODE_1939_length_1101_cov_18.867347:1-1101 changes to pilon.changes [pilon] Writing updated NODE_1939_length_1101_cov_18.867347_pilon to pilon.fasta [pilon] Writing NODE_1940_length_1101_cov_2.641837:1-1101 changes to pilon.changes [pilon] Writing updated NODE_1940_length_1101_cov_2.641837_pilon to pilon.fasta [pilon] Writing NODE_1941_length_1100_cov_8.596527:1-1100 changes to pilon.changes [pilon] Writing updated NODE_1941_length_1100_cov_8.596527_pilon to pilon.fasta [pilon] Writing NODE_1942_length_1100_cov_0.713994:1-1100 changes to pilon.changes [pilon] Writing updated NODE_1942_length_1100_cov_0.713994_pilon to pilon.fasta [pilon] Writing NODE_1943_length_1099_cov_24.443763:1-1099 changes to pilon.changes [pilon] Writing updated NODE_1943_length_1099_cov_24.443763_pilon to pilon.fasta [pilon] Writing NODE_1944_length_1099_cov_21.518405:1-1099 changes to pilon.changes [pilon] Writing updated NODE_1944_length_1099_cov_21.518405_pilon to pilon.fasta [pilon] Writing NODE_1945_length_1099_cov_2.384458:1-1099 changes to pilon.changes [pilon] Writing updated NODE_1945_length_1099_cov_2.384458_pilon to pilon.fasta [pilon] Writing NODE_1946_length_1099_cov_1.422290:1-1099 changes to pilon.changes [pilon] Writing updated NODE_1946_length_1099_cov_1.422290_pilon to pilon.fasta [pilon] Writing NODE_1947_length_1099_cov_1.204499:1-1099 changes to pilon.changes [pilon] Writing updated NODE_1947_length_1099_cov_1.204499_pilon to pilon.fasta [pilon] Writing NODE_1948_length_1098_cov_22.364381:1-1098 changes to pilon.changes [pilon] Writing updated NODE_1948_length_1098_cov_22.364381_pilon to pilon.fasta [pilon] Writing NODE_1949_length_1098_cov_18.953941:1-1098 changes to pilon.changes [pilon] Writing updated NODE_1949_length_1098_cov_18.953941_pilon to pilon.fasta [pilon] Writing NODE_1950_length_1098_cov_3.711361:1-1098 changes to pilon.changes [pilon] Writing updated NODE_1950_length_1098_cov_3.711361_pilon to pilon.fasta [pilon] Writing NODE_1951_length_1098_cov_1.516888:1-1098 changes to pilon.changes [pilon] Writing updated NODE_1951_length_1098_cov_1.516888_pilon to pilon.fasta [pilon] Writing NODE_1952_length_1097_cov_3.174180:1-1097 changes to pilon.changes [pilon] Writing updated NODE_1952_length_1097_cov_3.174180_pilon to pilon.fasta [pilon] Writing NODE_1953_length_1096_cov_26.383590:1-1096 changes to pilon.changes [pilon] Writing updated NODE_1953_length_1096_cov_26.383590_pilon to pilon.fasta [pilon] Writing NODE_1954_length_1096_cov_24.621538:1-1096 changes to pilon.changes [pilon] Writing updated NODE_1954_length_1096_cov_24.621538_pilon to pilon.fasta [pilon] Writing NODE_1955_length_1096_cov_21.495385:1-1096 changes to pilon.changes [pilon] Writing updated NODE_1955_length_1096_cov_21.495385_pilon to pilon.fasta [pilon] Writing NODE_1956_length_1096_cov_19.344615:1-1096 changes to pilon.changes [pilon] Writing updated NODE_1956_length_1096_cov_19.344615_pilon to pilon.fasta [pilon] Writing NODE_1957_length_1096_cov_3.350769:1-1096 changes to pilon.changes [pilon] Writing updated NODE_1957_length_1096_cov_3.350769_pilon to pilon.fasta [pilon] Writing NODE_1958_length_1096_cov_2.056410:1-1096 changes to pilon.changes [pilon] Writing updated NODE_1958_length_1096_cov_2.056410_pilon to pilon.fasta [pilon] Writing NODE_1959_length_1096_cov_1.543590:1-1096 changes to pilon.changes [pilon] Writing updated NODE_1959_length_1096_cov_1.543590_pilon to pilon.fasta [pilon] Writing NODE_1960_length_1095_cov_30.206366:1-1095 changes to pilon.changes [pilon] Writing updated NODE_1960_length_1095_cov_30.206366_pilon to pilon.fasta [pilon] Writing NODE_1961_length_1095_cov_27.591376:1-1095 changes to pilon.changes [pilon] Writing updated NODE_1961_length_1095_cov_27.591376_pilon to pilon.fasta [pilon] Writing NODE_1962_length_1095_cov_23.010267:1-1095 changes to pilon.changes [pilon] Writing updated NODE_1962_length_1095_cov_23.010267_pilon to pilon.fasta [pilon] Writing NODE_1963_length_1095_cov_2.680698:1-1095 changes to pilon.changes [pilon] Writing updated NODE_1963_length_1095_cov_2.680698_pilon to pilon.fasta [pilon] Writing NODE_1964_length_1095_cov_1.978439:1-1095 changes to pilon.changes [pilon] Writing updated NODE_1964_length_1095_cov_1.978439_pilon to pilon.fasta [pilon] Writing NODE_1965_length_1095_cov_1.329569:1-1095 changes to pilon.changes [pilon] Writing updated NODE_1965_length_1095_cov_1.329569_pilon to pilon.fasta [pilon] Writing NODE_1966_length_1094_cov_24.491264:1-1094 changes to pilon.changes [pilon] Writing updated NODE_1966_length_1094_cov_24.491264_pilon to pilon.fasta [pilon] Writing NODE_1967_length_1094_cov_19.441932:1-1094 changes to pilon.changes [pilon] Writing updated NODE_1967_length_1094_cov_19.441932_pilon to pilon.fasta [pilon] Writing NODE_1968_length_1094_cov_17.836588:1-1094 changes to pilon.changes [pilon] Writing updated NODE_1968_length_1094_cov_17.836588_pilon to pilon.fasta [pilon] Writing NODE_1969_length_1094_cov_16.924974:1-1094 changes to pilon.changes [pilon] Writing updated NODE_1969_length_1094_cov_16.924974_pilon to pilon.fasta [pilon] Writing NODE_1970_length_1094_cov_15.007194:1-1094 changes to pilon.changes [pilon] Writing updated NODE_1970_length_1094_cov_15.007194_pilon to pilon.fasta [pilon] Writing NODE_1971_length_1093_cov_31.199588:1-1093 changes to pilon.changes [pilon] Writing updated NODE_1971_length_1093_cov_31.199588_pilon to pilon.fasta [pilon] Writing NODE_1972_length_1093_cov_24.877572:1-1093 changes to pilon.changes [pilon] Writing updated NODE_1972_length_1093_cov_24.877572_pilon to pilon.fasta [pilon] Writing NODE_1973_length_1093_cov_19.209877:1-1093 changes to pilon.changes [pilon] Writing updated NODE_1973_length_1093_cov_19.209877_pilon to pilon.fasta [pilon] Writing NODE_1974_length_1093_cov_10.812757:1-1093 changes to pilon.changes [pilon] Writing updated NODE_1974_length_1093_cov_10.812757_pilon to pilon.fasta [pilon] Writing NODE_1975_length_1093_cov_1.910494:1-1093 changes to pilon.changes [pilon] Writing updated NODE_1975_length_1093_cov_1.910494_pilon to pilon.fasta [pilon] Writing NODE_1976_length_1092_cov_31.303811:1-1092 changes to pilon.changes [pilon] Writing updated NODE_1976_length_1092_cov_31.303811_pilon to pilon.fasta [pilon] Writing NODE_1977_length_1092_cov_30.497425:1-1092 changes to pilon.changes [pilon] Writing updated NODE_1977_length_1092_cov_30.497425_pilon to pilon.fasta [pilon] Writing NODE_1978_length_1092_cov_24.646756:1-1092 changes to pilon.changes [pilon] Writing updated NODE_1978_length_1092_cov_24.646756_pilon to pilon.fasta [pilon] Writing NODE_1979_length_1092_cov_14.506694:1-1092 changes to pilon.changes [pilon] Writing updated NODE_1979_length_1092_cov_14.506694_pilon to pilon.fasta [pilon] Writing NODE_1980_length_1092_cov_13.511843:1-1092 changes to pilon.changes [pilon] Writing updated NODE_1980_length_1092_cov_13.511843_pilon to pilon.fasta [pilon] Writing NODE_1981_length_1092_cov_5.492276:1-1092 changes to pilon.changes [pilon] Writing updated NODE_1981_length_1092_cov_5.492276_pilon to pilon.fasta [pilon] Writing NODE_1982_length_1092_cov_1.526262:1-1092 changes to pilon.changes [pilon] Writing updated NODE_1982_length_1092_cov_1.526262_pilon to pilon.fasta [pilon] Writing NODE_1983_length_1091_cov_5.151546:1-1091 changes to pilon.changes [pilon] Writing updated NODE_1983_length_1091_cov_5.151546_pilon to pilon.fasta [pilon] Writing NODE_1984_length_1091_cov_3.087629:1-1091 changes to pilon.changes [pilon] Writing updated NODE_1984_length_1091_cov_3.087629_pilon to pilon.fasta [pilon] Writing NODE_1985_length_1091_cov_2.252577:1-1091 changes to pilon.changes [pilon] Writing updated NODE_1985_length_1091_cov_2.252577_pilon to pilon.fasta [pilon] Writing NODE_1986_length_1090_cov_36.010320:1-1090 changes to pilon.changes [pilon] Writing updated NODE_1986_length_1090_cov_36.010320_pilon to pilon.fasta [pilon] Writing NODE_1987_length_1090_cov_23.134159:1-1090 changes to pilon.changes [pilon] Writing updated NODE_1987_length_1090_cov_23.134159_pilon to pilon.fasta [pilon] Writing NODE_1988_length_1090_cov_12.532508:1-1090 changes to pilon.changes [pilon] Writing updated NODE_1988_length_1090_cov_12.532508_pilon to pilon.fasta [pilon] Writing NODE_1989_length_1089_cov_12.209711:1-1089 changes to pilon.changes [pilon] Writing updated NODE_1989_length_1089_cov_12.209711_pilon to pilon.fasta [pilon] Writing NODE_1990_length_1089_cov_7.121901:1-1089 changes to pilon.changes [pilon] Writing updated NODE_1990_length_1089_cov_7.121901_pilon to pilon.fasta [pilon] Writing NODE_1991_length_1088_cov_36.895553:1-1088 changes to pilon.changes [pilon] Writing updated NODE_1991_length_1088_cov_36.895553_pilon to pilon.fasta [pilon] Writing NODE_1992_length_1088_cov_35.562565:1-1088 changes to pilon.changes [pilon] Writing updated NODE_1992_length_1088_cov_35.562565_pilon to pilon.fasta [pilon] Writing NODE_1993_length_1088_cov_26.555326:1-1088 changes to pilon.changes [pilon] Writing updated NODE_1993_length_1088_cov_26.555326_pilon to pilon.fasta [pilon] Writing NODE_1994_length_1088_cov_22.816960:1-1088 changes to pilon.changes [pilon] Writing updated NODE_1994_length_1088_cov_22.816960_pilon to pilon.fasta [pilon] Writing NODE_1995_length_1088_cov_7.247156:1-1088 changes to pilon.changes [pilon] Writing updated NODE_1995_length_1088_cov_7.247156_pilon to pilon.fasta [pilon] Writing NODE_1996_length_1088_cov_1.315408:1-1088 changes to pilon.changes [pilon] Writing updated NODE_1996_length_1088_cov_1.315408_pilon to pilon.fasta [pilon] Writing NODE_1997_length_1087_cov_31.621118:1-1087 changes to pilon.changes [pilon] Writing updated NODE_1997_length_1087_cov_31.621118_pilon to pilon.fasta [pilon] Writing NODE_1998_length_1087_cov_8.768116:1-1087 changes to pilon.changes [pilon] Writing updated NODE_1998_length_1087_cov_8.768116_pilon to pilon.fasta [pilon] Writing NODE_1999_length_1087_cov_5.019669:1-1087 changes to pilon.changes [pilon] Writing updated NODE_1999_length_1087_cov_5.019669_pilon to pilon.fasta [pilon] Writing NODE_2000_length_1087_cov_1.853002:1-1087 changes to pilon.changes [pilon] Writing updated NODE_2000_length_1087_cov_1.853002_pilon to pilon.fasta [pilon] Writing NODE_2001_length_1086_cov_29.139896:1-1086 changes to pilon.changes [pilon] Writing updated NODE_2001_length_1086_cov_29.139896_pilon to pilon.fasta [pilon] Writing NODE_2002_length_1086_cov_23.687047:1-1086 changes to pilon.changes [pilon] Writing updated NODE_2002_length_1086_cov_23.687047_pilon to pilon.fasta [pilon] Writing NODE_2003_length_1086_cov_11.506736:1-1086 changes to pilon.changes [pilon] Writing updated NODE_2003_length_1086_cov_11.506736_pilon to pilon.fasta [pilon] Writing NODE_2004_length_1085_cov_31.202282:1-1085 changes to pilon.changes [pilon] Writing updated NODE_2004_length_1085_cov_31.202282_pilon to pilon.fasta [pilon] Writing NODE_2005_length_1085_cov_27.278008:1-1085 changes to pilon.changes [pilon] Writing updated NODE_2005_length_1085_cov_27.278008_pilon to pilon.fasta [pilon] Writing NODE_2006_length_1085_cov_26.798755:1-1085 changes to pilon.changes [pilon] Writing updated NODE_2006_length_1085_cov_26.798755_pilon to pilon.fasta [pilon] Writing NODE_2007_length_1085_cov_21.813278:1-1085 changes to pilon.changes [pilon] Writing updated NODE_2007_length_1085_cov_21.813278_pilon to pilon.fasta [pilon] Writing NODE_2008_length_1085_cov_15.208506:1-1085 changes to pilon.changes [pilon] Writing updated NODE_2008_length_1085_cov_15.208506_pilon to pilon.fasta [pilon] Writing NODE_2009_length_1084_cov_33.442368:1-1084 changes to pilon.changes [pilon] Writing updated NODE_2009_length_1084_cov_33.442368_pilon to pilon.fasta [pilon] Writing NODE_2010_length_1084_cov_21.807892:1-1084 changes to pilon.changes [pilon] Writing updated NODE_2010_length_1084_cov_21.807892_pilon to pilon.fasta [pilon] Writing NODE_2011_length_1084_cov_1.477674:1-1084 changes to pilon.changes [pilon] Writing updated NODE_2011_length_1084_cov_1.477674_pilon to pilon.fasta [pilon] Writing NODE_2012_length_1083_cov_32.136175:1-1083 changes to pilon.changes [pilon] Writing updated NODE_2012_length_1083_cov_32.136175_pilon to pilon.fasta [pilon] Writing NODE_2013_length_1083_cov_24.715177:1-1083 changes to pilon.changes [pilon] Writing updated NODE_2013_length_1083_cov_24.715177_pilon to pilon.fasta [pilon] Writing NODE_2014_length_1083_cov_1.708940:1-1083 changes to pilon.changes [pilon] Writing updated NODE_2014_length_1083_cov_1.708940_pilon to pilon.fasta [pilon] Writing NODE_2015_length_1082_cov_49.887617:1-1082 changes to pilon.changes [pilon] Writing updated NODE_2015_length_1082_cov_49.887617_pilon to pilon.fasta [pilon] Writing NODE_2016_length_1082_cov_28.983351:1-1082 changes to pilon.changes [pilon] Writing updated NODE_2016_length_1082_cov_28.983351_pilon to pilon.fasta [pilon] Writing NODE_2017_length_1082_cov_23.770031:1-1082 changes to pilon.changes [pilon] Writing updated NODE_2017_length_1082_cov_23.770031_pilon to pilon.fasta [pilon] Writing NODE_2018_length_1082_cov_19.497399:1-1082 changes to pilon.changes [pilon] Writing updated NODE_2018_length_1082_cov_19.497399_pilon to pilon.fasta [pilon] Writing NODE_2019_length_1082_cov_11.710718:1-1082 changes to pilon.changes [pilon] Writing updated NODE_2019_length_1082_cov_11.710718_pilon to pilon.fasta [pilon] Writing NODE_2020_length_1081_cov_12.026042:1-1081 changes to pilon.changes [pilon] Writing updated NODE_2020_length_1081_cov_12.026042_pilon to pilon.fasta [pilon] Writing NODE_2021_length_1081_cov_3.140625:1-1081 changes to pilon.changes [pilon] Writing updated NODE_2021_length_1081_cov_3.140625_pilon to pilon.fasta [pilon] Writing NODE_2022_length_1081_cov_2.157292:1-1081 changes to pilon.changes [pilon] Writing updated NODE_2022_length_1081_cov_2.157292_pilon to pilon.fasta [pilon] Writing NODE_2023_length_1081_cov_1.733333:1-1081 changes to pilon.changes [pilon] Writing updated NODE_2023_length_1081_cov_1.733333_pilon to pilon.fasta [pilon] Writing NODE_2024_length_1080_cov_29.242961:1-1080 changes to pilon.changes [pilon] Writing updated NODE_2024_length_1080_cov_29.242961_pilon to pilon.fasta [pilon] Writing NODE_2025_length_1080_cov_16.340980:1-1080 changes to pilon.changes [pilon] Writing updated NODE_2025_length_1080_cov_16.340980_pilon to pilon.fasta [pilon] Writing NODE_2026_length_1079_cov_15.757829:1-1079 changes to pilon.changes [pilon] Writing updated NODE_2026_length_1079_cov_15.757829_pilon to pilon.fasta [pilon] Writing NODE_2027_length_1079_cov_9.204593:1-1079 changes to pilon.changes [pilon] Writing updated NODE_2027_length_1079_cov_9.204593_pilon to pilon.fasta [pilon] Writing NODE_2028_length_1079_cov_1.323591:1-1079 changes to pilon.changes [pilon] Writing updated NODE_2028_length_1079_cov_1.323591_pilon to pilon.fasta [pilon] Writing NODE_2029_length_1079_cov_1.189979:1-1079 changes to pilon.changes [pilon] Writing updated NODE_2029_length_1079_cov_1.189979_pilon to pilon.fasta [pilon] Writing NODE_2030_length_1078_cov_22.609195:1-1078 changes to pilon.changes [pilon] Writing updated NODE_2030_length_1078_cov_22.609195_pilon to pilon.fasta [pilon] Writing NODE_2031_length_1078_cov_11.035528:1-1078 changes to pilon.changes [pilon] Writing updated NODE_2031_length_1078_cov_11.035528_pilon to pilon.fasta [pilon] Writing NODE_2032_length_1078_cov_3.575758:1-1078 changes to pilon.changes [pilon] Writing updated NODE_2032_length_1078_cov_3.575758_pilon to pilon.fasta [pilon] Writing NODE_2033_length_1077_cov_54.967573:1-1077 changes to pilon.changes [pilon] Writing updated NODE_2033_length_1077_cov_54.967573_pilon to pilon.fasta [pilon] Writing NODE_2034_length_1077_cov_20.535565:1-1077 changes to pilon.changes [pilon] Writing updated NODE_2034_length_1077_cov_20.535565_pilon to pilon.fasta [pilon] Writing NODE_2035_length_1077_cov_1.646444:1-1077 changes to pilon.changes [pilon] Writing updated NODE_2035_length_1077_cov_1.646444_pilon to pilon.fasta [pilon] Writing NODE_2036_length_1076_cov_37.917277:1-1076 changes to pilon.changes [pilon] Writing updated NODE_2036_length_1076_cov_37.917277_pilon to pilon.fasta [pilon] Writing NODE_2037_length_1076_cov_34.100524:1-1076 changes to pilon.changes [pilon] Writing updated NODE_2037_length_1076_cov_34.100524_pilon to pilon.fasta [pilon] Writing NODE_2038_length_1076_cov_27.946597:1-1076 changes to pilon.changes [pilon] Writing updated NODE_2038_length_1076_cov_27.946597_pilon to pilon.fasta [pilon] Writing NODE_2039_length_1076_cov_14.513089:1-1076 changes to pilon.changes [pilon] Writing updated NODE_2039_length_1076_cov_14.513089_pilon to pilon.fasta [pilon] Writing NODE_2040_length_1075_cov_22.715933:1-1075 changes to pilon.changes [pilon] Writing updated NODE_2040_length_1075_cov_22.715933_pilon to pilon.fasta [pilon] Writing NODE_2041_length_1075_cov_1.418239:1-1075 changes to pilon.changes [pilon] Writing updated NODE_2041_length_1075_cov_1.418239_pilon to pilon.fasta [pilon] Writing NODE_2042_length_1074_cov_19.816369:1-1074 changes to pilon.changes [pilon] Writing updated NODE_2042_length_1074_cov_19.816369_pilon to pilon.fasta [pilon] Writing NODE_2043_length_1074_cov_13.589717:1-1074 changes to pilon.changes [pilon] Writing updated NODE_2043_length_1074_cov_13.589717_pilon to pilon.fasta [pilon] Writing NODE_2044_length_1074_cov_11.684155:1-1074 changes to pilon.changes [pilon] Writing updated NODE_2044_length_1074_cov_11.684155_pilon to pilon.fasta [pilon] Writing NODE_2045_length_1074_cov_2.648478:1-1074 changes to pilon.changes [pilon] Writing updated NODE_2045_length_1074_cov_2.648478_pilon to pilon.fasta [pilon] Writing NODE_2046_length_1074_cov_0.599161:1-1074 changes to pilon.changes [pilon] Writing updated NODE_2046_length_1074_cov_0.599161_pilon to pilon.fasta [pilon] Writing NODE_2047_length_1073_cov_22.086134:1-1073 changes to pilon.changes [pilon] Writing updated NODE_2047_length_1073_cov_22.086134_pilon to pilon.fasta [pilon] Writing NODE_2048_length_1073_cov_3.056723:1-1073 changes to pilon.changes [pilon] Writing updated NODE_2048_length_1073_cov_3.056723_pilon to pilon.fasta [pilon] Writing NODE_2049_length_1072_cov_20.855941:1-1072 changes to pilon.changes [pilon] Writing updated NODE_2049_length_1072_cov_20.855941_pilon to pilon.fasta [pilon] Writing NODE_2050_length_1072_cov_2.737119:1-1072 changes to pilon.changes [pilon] Writing updated NODE_2050_length_1072_cov_2.737119_pilon to pilon.fasta [pilon] Writing NODE_2051_length_1071_cov_24.371579:1-1071 changes to pilon.changes [pilon] Writing updated NODE_2051_length_1071_cov_24.371579_pilon to pilon.fasta [pilon] Writing NODE_2052_length_1071_cov_23.478947:1-1071 changes to pilon.changes [pilon] Writing updated NODE_2052_length_1071_cov_23.478947_pilon to pilon.fasta [pilon] Writing NODE_2053_length_1071_cov_21.823158:1-1071 changes to pilon.changes [pilon] Writing updated NODE_2053_length_1071_cov_21.823158_pilon to pilon.fasta [pilon] Writing NODE_2054_length_1071_cov_15.011579:1-1071 changes to pilon.changes [pilon] Writing updated NODE_2054_length_1071_cov_15.011579_pilon to pilon.fasta [pilon] Writing NODE_2055_length_1071_cov_14.672632:1-1071 changes to pilon.changes [pilon] Writing updated NODE_2055_length_1071_cov_14.672632_pilon to pilon.fasta [pilon] Writing NODE_2056_length_1070_cov_20.198103:1-1070 changes to pilon.changes [pilon] Writing updated NODE_2056_length_1070_cov_20.198103_pilon to pilon.fasta [pilon] Writing NODE_2057_length_1070_cov_17.275026:1-1070 changes to pilon.changes [pilon] Writing updated NODE_2057_length_1070_cov_17.275026_pilon to pilon.fasta [pilon] Writing NODE_2058_length_1070_cov_1.587987:1-1070 changes to pilon.changes [pilon] Writing updated NODE_2058_length_1070_cov_1.587987_pilon to pilon.fasta [pilon] Writing NODE_2059_length_1070_cov_0.629083:1-1070 changes to pilon.changes [pilon] Writing updated NODE_2059_length_1070_cov_0.629083_pilon to pilon.fasta [pilon] Writing NODE_2060_length_1069_cov_55.856540:1-1069 changes to pilon.changes [pilon] Writing updated NODE_2060_length_1069_cov_55.856540_pilon to pilon.fasta [pilon] Writing NODE_2061_length_1069_cov_30.909283:1-1069 changes to pilon.changes [pilon] Writing updated NODE_2061_length_1069_cov_30.909283_pilon to pilon.fasta [pilon] Writing NODE_2062_length_1069_cov_11.678270:1-1069 changes to pilon.changes [pilon] Writing updated NODE_2062_length_1069_cov_11.678270_pilon to pilon.fasta [pilon] Writing NODE_2063_length_1069_cov_9.766878:1-1069 changes to pilon.changes [pilon] Writing updated NODE_2063_length_1069_cov_9.766878_pilon to pilon.fasta [pilon] Writing NODE_2064_length_1069_cov_2.187764:1-1069 changes to pilon.changes [pilon] Writing updated NODE_2064_length_1069_cov_2.187764_pilon to pilon.fasta [pilon] Writing NODE_2065_length_1068_cov_30.678986:1-1068 changes to pilon.changes [pilon] Writing updated NODE_2065_length_1068_cov_30.678986_pilon to pilon.fasta [pilon] Writing NODE_2066_length_1068_cov_27.198522:1-1068 changes to pilon.changes [pilon] Writing updated NODE_2066_length_1068_cov_27.198522_pilon to pilon.fasta [pilon] Writing NODE_2067_length_1068_cov_17.976769:1-1068 changes to pilon.changes [pilon] Writing updated NODE_2067_length_1068_cov_17.976769_pilon to pilon.fasta [pilon] Writing NODE_2068_length_1068_cov_9.560718:1-1068 changes to pilon.changes [pilon] Writing updated NODE_2068_length_1068_cov_9.560718_pilon to pilon.fasta [pilon] Writing NODE_2069_length_1068_cov_2.907075:1-1068 changes to pilon.changes [pilon] Writing updated NODE_2069_length_1068_cov_2.907075_pilon to pilon.fasta [pilon] Writing NODE_2070_length_1067_cov_26.363636:1-1067 changes to pilon.changes [pilon] Writing updated NODE_2070_length_1067_cov_26.363636_pilon to pilon.fasta [pilon] Writing NODE_2071_length_1067_cov_20.595137:1-1067 changes to pilon.changes [pilon] Writing updated NODE_2071_length_1067_cov_20.595137_pilon to pilon.fasta [pilon] Writing NODE_2072_length_1067_cov_2.511628:1-1067 changes to pilon.changes [pilon] Writing updated NODE_2072_length_1067_cov_2.511628_pilon to pilon.fasta [pilon] Writing NODE_2073_length_1067_cov_2.205074:1-1067 changes to pilon.changes [pilon] Writing updated NODE_2073_length_1067_cov_2.205074_pilon to pilon.fasta [pilon] Writing NODE_2074_length_1066_cov_2.270899:1-1066 changes to pilon.changes [pilon] Writing updated NODE_2074_length_1066_cov_2.270899_pilon to pilon.fasta [pilon] Writing NODE_2075_length_1066_cov_1.808466:1-1066 changes to pilon.changes [pilon] Writing updated NODE_2075_length_1066_cov_1.808466_pilon to pilon.fasta [pilon] Writing NODE_2076_length_1065_cov_49.500000:1-1065 changes to pilon.changes [pilon] Writing updated NODE_2076_length_1065_cov_49.500000_pilon to pilon.fasta [pilon] Writing NODE_2077_length_1065_cov_25.200212:1-1065 changes to pilon.changes [pilon] Writing updated NODE_2077_length_1065_cov_25.200212_pilon to pilon.fasta [pilon] Writing NODE_2078_length_1065_cov_3.424788:1-1065 changes to pilon.changes [pilon] Writing updated NODE_2078_length_1065_cov_3.424788_pilon to pilon.fasta [pilon] Writing NODE_2079_length_1065_cov_1.462924:1-1065 changes to pilon.changes [pilon] Writing updated NODE_2079_length_1065_cov_1.462924_pilon to pilon.fasta [pilon] Writing NODE_2080_length_1065_cov_1.256356:1-1065 changes to pilon.changes [pilon] Writing updated NODE_2080_length_1065_cov_1.256356_pilon to pilon.fasta [pilon] Writing NODE_2081_length_1064_cov_12.549311:1-1064 changes to pilon.changes [pilon] Writing updated NODE_2081_length_1064_cov_12.549311_pilon to pilon.fasta [pilon] Writing NODE_2082_length_1063_cov_26.011677:1-1063 changes to pilon.changes [pilon] Writing updated NODE_2082_length_1063_cov_26.011677_pilon to pilon.fasta [pilon] Writing NODE_2083_length_1063_cov_18.505308:1-1063 changes to pilon.changes [pilon] Writing updated NODE_2083_length_1063_cov_18.505308_pilon to pilon.fasta [pilon] Writing NODE_2084_length_1063_cov_17.118896:1-1063 changes to pilon.changes [pilon] Writing updated NODE_2084_length_1063_cov_17.118896_pilon to pilon.fasta [pilon] Writing NODE_2085_length_1063_cov_11.460722:1-1063 changes to pilon.changes [pilon] Writing updated NODE_2085_length_1063_cov_11.460722_pilon to pilon.fasta [pilon] Writing NODE_2086_length_1062_cov_28.094580:1-1062 changes to pilon.changes [pilon] Writing updated NODE_2086_length_1062_cov_28.094580_pilon to pilon.fasta [pilon] Writing NODE_2087_length_1062_cov_18.222104:1-1062 changes to pilon.changes [pilon] Writing updated NODE_2087_length_1062_cov_18.222104_pilon to pilon.fasta [pilon] Writing NODE_2088_length_1062_cov_16.972370:1-1062 changes to pilon.changes [pilon] Writing updated NODE_2088_length_1062_cov_16.972370_pilon to pilon.fasta [pilon] Writing NODE_2089_length_1062_cov_11.364506:1-1062 changes to pilon.changes [pilon] Writing updated NODE_2089_length_1062_cov_11.364506_pilon to pilon.fasta [pilon] Writing NODE_2090_length_1062_cov_2.201913:1-1062 changes to pilon.changes [pilon] Writing updated NODE_2090_length_1062_cov_2.201913_pilon to pilon.fasta [pilon] Writing NODE_2091_length_1061_cov_37.856383:1-1061 changes to pilon.changes [pilon] Writing updated NODE_2091_length_1061_cov_37.856383_pilon to pilon.fasta [pilon] Writing NODE_2092_length_1061_cov_22.100000:1-1061 changes to pilon.changes [pilon] Writing updated NODE_2092_length_1061_cov_22.100000_pilon to pilon.fasta [pilon] Writing NODE_2093_length_1061_cov_19.752128:1-1061 changes to pilon.changes [pilon] Writing updated NODE_2093_length_1061_cov_19.752128_pilon to pilon.fasta [pilon] Writing NODE_2094_length_1061_cov_19.006383:1-1061 changes to pilon.changes [pilon] Writing updated NODE_2094_length_1061_cov_19.006383_pilon to pilon.fasta [pilon] Writing NODE_2095_length_1061_cov_13.442553:1-1061 changes to pilon.changes [pilon] Writing updated NODE_2095_length_1061_cov_13.442553_pilon to pilon.fasta [pilon] Writing NODE_2096_length_1061_cov_1.663830:1-1061 changes to pilon.changes [pilon] Writing updated NODE_2096_length_1061_cov_1.663830_pilon to pilon.fasta [pilon] Writing NODE_2097_length_1060_cov_25.597444:1-1060 changes to pilon.changes [pilon] Writing updated NODE_2097_length_1060_cov_25.597444_pilon to pilon.fasta [pilon] Writing NODE_2098_length_1060_cov_2.281150:1-1060 changes to pilon.changes [pilon] Writing updated NODE_2098_length_1060_cov_2.281150_pilon to pilon.fasta [pilon] Writing NODE_2099_length_1060_cov_1.189563:1-1060 changes to pilon.changes [pilon] Writing updated NODE_2099_length_1060_cov_1.189563_pilon to pilon.fasta [pilon] Writing NODE_2100_length_1059_cov_19.271855:1-1059 changes to pilon.changes [pilon] Writing updated NODE_2100_length_1059_cov_19.271855_pilon to pilon.fasta [pilon] Writing NODE_2101_length_1059_cov_1.312367:1-1059 changes to pilon.changes [pilon] Writing updated NODE_2101_length_1059_cov_1.312367_pilon to pilon.fasta [pilon] Writing NODE_2102_length_1058_cov_29.386339:1-1058 changes to pilon.changes [pilon] Writing updated NODE_2102_length_1058_cov_29.386339_pilon to pilon.fasta [pilon] Writing NODE_2103_length_1058_cov_1.731057:1-1058 changes to pilon.changes [pilon] Writing updated NODE_2103_length_1058_cov_1.731057_pilon to pilon.fasta [pilon] Writing NODE_2104_length_1058_cov_1.228388:1-1058 changes to pilon.changes [pilon] Writing updated NODE_2104_length_1058_cov_1.228388_pilon to pilon.fasta [pilon] Writing NODE_2105_length_1057_cov_24.673077:1-1057 changes to pilon.changes [pilon] Writing updated NODE_2105_length_1057_cov_24.673077_pilon to pilon.fasta [pilon] Writing NODE_2106_length_1057_cov_16.404915:1-1057 changes to pilon.changes [pilon] Writing updated NODE_2106_length_1057_cov_16.404915_pilon to pilon.fasta [pilon] Writing NODE_2107_length_1057_cov_7.521368:1-1057 changes to pilon.changes [pilon] Writing updated NODE_2107_length_1057_cov_7.521368_pilon to pilon.fasta [pilon] Writing NODE_2108_length_1057_cov_2.736111:1-1057 changes to pilon.changes [pilon] Writing updated NODE_2108_length_1057_cov_2.736111_pilon to pilon.fasta [pilon] Writing NODE_2109_length_1057_cov_1.628205:1-1057 changes to pilon.changes [pilon] Writing updated NODE_2109_length_1057_cov_1.628205_pilon to pilon.fasta [pilon] Writing NODE_2110_length_1056_cov_22.087701:1-1056 changes to pilon.changes [pilon] Writing updated NODE_2110_length_1056_cov_22.087701_pilon to pilon.fasta [pilon] Writing NODE_2111_length_1056_cov_16.763636:1-1056 changes to pilon.changes [pilon] Writing updated NODE_2111_length_1056_cov_16.763636_pilon to pilon.fasta [pilon] Writing NODE_2112_length_1056_cov_1.022460:1-1056 changes to pilon.changes [pilon] Writing updated NODE_2112_length_1056_cov_1.022460_pilon to pilon.fasta [pilon] Writing NODE_2113_length_1055_cov_35.532120:1-1055 changes to pilon.changes [pilon] Writing updated NODE_2113_length_1055_cov_35.532120_pilon to pilon.fasta [pilon] Writing NODE_2114_length_1055_cov_28.826552:1-1055 changes to pilon.changes [pilon] Writing updated NODE_2114_length_1055_cov_28.826552_pilon to pilon.fasta [pilon] Writing NODE_2115_length_1055_cov_27.062099:1-1055 changes to pilon.changes [pilon] Writing updated NODE_2115_length_1055_cov_27.062099_pilon to pilon.fasta [pilon] Writing NODE_2116_length_1055_cov_10.929336:1-1055 changes to pilon.changes [pilon] Writing updated NODE_2116_length_1055_cov_10.929336_pilon to pilon.fasta [pilon] Writing NODE_2117_length_1055_cov_1.367238:1-1055 changes to pilon.changes [pilon] Writing updated NODE_2117_length_1055_cov_1.367238_pilon to pilon.fasta [pilon] Writing NODE_2118_length_1055_cov_1.167024:1-1055 changes to pilon.changes [pilon] Writing updated NODE_2118_length_1055_cov_1.167024_pilon to pilon.fasta [pilon] Writing NODE_2119_length_1053_cov_29.762876:1-1053 changes to pilon.changes [pilon] Writing updated NODE_2119_length_1053_cov_29.762876_pilon to pilon.fasta [pilon] Writing NODE_2120_length_1053_cov_28.111588:1-1053 changes to pilon.changes [pilon] Writing updated NODE_2120_length_1053_cov_28.111588_pilon to pilon.fasta [pilon] Writing NODE_2121_length_1053_cov_17.476395:1-1053 changes to pilon.changes [pilon] Writing updated NODE_2121_length_1053_cov_17.476395_pilon to pilon.fasta [pilon] Writing NODE_2122_length_1053_cov_16.752146:1-1053 changes to pilon.changes [pilon] Writing updated NODE_2122_length_1053_cov_16.752146_pilon to pilon.fasta [pilon] Writing NODE_2123_length_1053_cov_1.135193:1-1053 changes to pilon.changes [pilon] Writing updated NODE_2123_length_1053_cov_1.135193_pilon to pilon.fasta [pilon] Writing NODE_2124_length_1052_cov_36.515575:1-1052 changes to pilon.changes [pilon] Writing updated NODE_2124_length_1052_cov_36.515575_pilon to pilon.fasta [pilon] Writing NODE_2125_length_1052_cov_30.818475:1-1052 changes to pilon.changes [pilon] Writing updated NODE_2125_length_1052_cov_30.818475_pilon to pilon.fasta [pilon] Writing NODE_2126_length_1052_cov_29.994629:1-1052 changes to pilon.changes [pilon] Writing updated NODE_2126_length_1052_cov_29.994629_pilon to pilon.fasta [pilon] Writing NODE_2127_length_1052_cov_27.691729:1-1052 changes to pilon.changes [pilon] Writing updated NODE_2127_length_1052_cov_27.691729_pilon to pilon.fasta [pilon] Writing NODE_2128_length_1052_cov_4.187970:1-1052 changes to pilon.changes [pilon] Writing updated NODE_2128_length_1052_cov_4.187970_pilon to pilon.fasta [pilon] Writing NODE_2129_length_1051_cov_33.689247:1-1051 changes to pilon.changes [pilon] Writing updated NODE_2129_length_1051_cov_33.689247_pilon to pilon.fasta [pilon] Writing NODE_2130_length_1051_cov_29.349462:1-1051 changes to pilon.changes [pilon] Writing updated NODE_2130_length_1051_cov_29.349462_pilon to pilon.fasta [pilon] Writing NODE_2131_length_1051_cov_25.360215:1-1051 changes to pilon.changes [pilon] Writing updated NODE_2131_length_1051_cov_25.360215_pilon to pilon.fasta [pilon] Writing NODE_2132_length_1051_cov_20.546237:1-1051 changes to pilon.changes [pilon] Writing updated NODE_2132_length_1051_cov_20.546237_pilon to pilon.fasta [pilon] Writing NODE_2133_length_1051_cov_17.421505:1-1051 changes to pilon.changes [pilon] Writing updated NODE_2133_length_1051_cov_17.421505_pilon to pilon.fasta [pilon] Writing NODE_2134_length_1050_cov_32.415501:1-1050 changes to pilon.changes [pilon] Writing updated NODE_2134_length_1050_cov_32.415501_pilon to pilon.fasta [pilon] Writing NODE_2135_length_1050_cov_14.736276:1-1050 changes to pilon.changes [pilon] Writing updated NODE_2135_length_1050_cov_14.736276_pilon to pilon.fasta [pilon] Writing NODE_2136_length_1050_cov_0.555436:1-1050 changes to pilon.changes [pilon] Writing updated NODE_2136_length_1050_cov_0.555436_pilon to pilon.fasta [pilon] Writing NODE_2137_length_1049_cov_31.591595:1-1049 changes to pilon.changes [pilon] Writing updated NODE_2137_length_1049_cov_31.591595_pilon to pilon.fasta [pilon] Writing NODE_2138_length_1049_cov_20.465517:1-1049 changes to pilon.changes [pilon] Writing updated NODE_2138_length_1049_cov_20.465517_pilon to pilon.fasta [pilon] Writing NODE_2139_length_1049_cov_11.545259:1-1049 changes to pilon.changes [pilon] Writing updated NODE_2139_length_1049_cov_11.545259_pilon to pilon.fasta [pilon] Writing NODE_2140_length_1049_cov_8.535560:1-1049 changes to pilon.changes [pilon] Writing updated NODE_2140_length_1049_cov_8.535560_pilon to pilon.fasta [pilon] Writing NODE_2141_length_1049_cov_0.915948:1-1049 changes to pilon.changes [pilon] Writing updated NODE_2141_length_1049_cov_0.915948_pilon to pilon.fasta [pilon] Writing NODE_2142_length_1048_cov_14.069040:1-1048 changes to pilon.changes [pilon] Writing updated NODE_2142_length_1048_cov_14.069040_pilon to pilon.fasta [pilon] Writing NODE_2143_length_1048_cov_1.078749:1-1048 changes to pilon.changes [pilon] Writing updated NODE_2143_length_1048_cov_1.078749_pilon to pilon.fasta [pilon] Writing NODE_2144_length_1047_cov_22.194384:1-1047 changes to pilon.changes [pilon] Writing updated NODE_2144_length_1047_cov_22.194384_pilon to pilon.fasta [pilon] Writing NODE_2145_length_1047_cov_15.859611:1-1047 changes to pilon.changes [pilon] Writing updated NODE_2145_length_1047_cov_15.859611_pilon to pilon.fasta [pilon] Writing NODE_2146_length_1047_cov_14.694384:1-1047 changes to pilon.changes [pilon] Writing updated NODE_2146_length_1047_cov_14.694384_pilon to pilon.fasta [pilon] Writing NODE_2147_length_1047_cov_9.550756:1-1047 changes to pilon.changes [pilon] Writing updated NODE_2147_length_1047_cov_9.550756_pilon to pilon.fasta [pilon] Writing NODE_2148_length_1047_cov_2.409287:1-1047 changes to pilon.changes [pilon] Writing updated NODE_2148_length_1047_cov_2.409287_pilon to pilon.fasta [pilon] Writing NODE_2149_length_1046_cov_33.762162:1-1046 changes to pilon.changes [pilon] Writing updated NODE_2149_length_1046_cov_33.762162_pilon to pilon.fasta [pilon] Writing NODE_2150_length_1046_cov_13.571892:1-1046 changes to pilon.changes [pilon] Writing updated NODE_2150_length_1046_cov_13.571892_pilon to pilon.fasta [pilon] Writing NODE_2151_length_1046_cov_4.056216:1-1046 changes to pilon.changes [pilon] Writing updated NODE_2151_length_1046_cov_4.056216_pilon to pilon.fasta [pilon] Writing NODE_2152_length_1044_cov_57.247021:1-1044 changes to pilon.changes [pilon] Writing updated NODE_2152_length_1044_cov_57.247021_pilon to pilon.fasta [pilon] Writing NODE_2153_length_1044_cov_26.336945:1-1044 changes to pilon.changes [pilon] Writing updated NODE_2153_length_1044_cov_26.336945_pilon to pilon.fasta [pilon] Writing NODE_2154_length_1044_cov_18.601300:1-1044 changes to pilon.changes [pilon] Writing updated NODE_2154_length_1044_cov_18.601300_pilon to pilon.fasta [pilon] Writing NODE_2155_length_1044_cov_2.274106:1-1044 changes to pilon.changes [pilon] Writing updated NODE_2155_length_1044_cov_2.274106_pilon to pilon.fasta [pilon] Writing NODE_2156_length_1044_cov_1.256771:1-1044 changes to pilon.changes [pilon] Writing updated NODE_2156_length_1044_cov_1.256771_pilon to pilon.fasta [pilon] Writing NODE_2157_length_1043_cov_1.977223:1-1043 changes to pilon.changes [pilon] Writing updated NODE_2157_length_1043_cov_1.977223_pilon to pilon.fasta [pilon] Writing NODE_2158_length_1043_cov_1.779826:1-1043 changes to pilon.changes [pilon] Writing updated NODE_2158_length_1043_cov_1.779826_pilon to pilon.fasta [pilon] Writing NODE_2159_length_1042_cov_25.093377:1-1042 changes to pilon.changes [pilon] Writing updated NODE_2159_length_1042_cov_25.093377_pilon to pilon.fasta [pilon] Writing NODE_2160_length_1042_cov_23.821933:1-1042 changes to pilon.changes [pilon] Writing updated NODE_2160_length_1042_cov_23.821933_pilon to pilon.fasta [pilon] Writing NODE_2161_length_1042_cov_18.861021:1-1042 changes to pilon.changes [pilon] Writing updated NODE_2161_length_1042_cov_18.861021_pilon to pilon.fasta [pilon] Writing NODE_2162_length_1042_cov_15.406080:1-1042 changes to pilon.changes [pilon] Writing updated NODE_2162_length_1042_cov_15.406080_pilon to pilon.fasta [pilon] Writing NODE_2163_length_1042_cov_14.889251:1-1042 changes to pilon.changes [pilon] Writing updated NODE_2163_length_1042_cov_14.889251_pilon to pilon.fasta [pilon] Writing NODE_2164_length_1042_cov_13.147666:1-1042 changes to pilon.changes [pilon] Writing updated NODE_2164_length_1042_cov_13.147666_pilon to pilon.fasta [pilon] Writing NODE_2165_length_1042_cov_1.636265:1-1042 changes to pilon.changes [pilon] Writing updated NODE_2165_length_1042_cov_1.636265_pilon to pilon.fasta [pilon] Writing NODE_2166_length_1042_cov_1.550489:1-1042 changes to pilon.changes [pilon] Writing updated NODE_2166_length_1042_cov_1.550489_pilon to pilon.fasta [pilon] Writing NODE_2167_length_1041_cov_24.938043:1-1041 changes to pilon.changes [pilon] Writing updated NODE_2167_length_1041_cov_24.938043_pilon to pilon.fasta [pilon] Writing NODE_2168_length_1041_cov_14.154348:1-1041 changes to pilon.changes [pilon] Writing updated NODE_2168_length_1041_cov_14.154348_pilon to pilon.fasta [pilon] Writing NODE_2169_length_1041_cov_3.097826:1-1041 changes to pilon.changes [pilon] Writing updated NODE_2169_length_1041_cov_3.097826_pilon to pilon.fasta [pilon] Writing NODE_2170_length_1041_cov_2.513043:1-1041 changes to pilon.changes [pilon] Writing updated NODE_2170_length_1041_cov_2.513043_pilon to pilon.fasta [pilon] Writing NODE_2171_length_1040_cov_52.459195:1-1040 changes to pilon.changes [pilon] Writing updated NODE_2171_length_1040_cov_52.459195_pilon to pilon.fasta [pilon] Writing NODE_2172_length_1040_cov_41.737758:1-1040 changes to pilon.changes [pilon] Writing updated NODE_2172_length_1040_cov_41.737758_pilon to pilon.fasta [pilon] Writing NODE_2173_length_1040_cov_13.883569:1-1040 changes to pilon.changes [pilon] Writing updated NODE_2173_length_1040_cov_13.883569_pilon to pilon.fasta [pilon] Writing NODE_2174_length_1040_cov_11.956474:1-1040 changes to pilon.changes [pilon] Writing updated NODE_2174_length_1040_cov_11.956474_pilon to pilon.fasta [pilon] Writing NODE_2175_length_1040_cov_11.780196:1-1040 changes to pilon.changes [pilon] Writing updated NODE_2175_length_1040_cov_11.780196_pilon to pilon.fasta [pilon] Writing NODE_2176_length_1040_cov_3.138194:1-1040 changes to pilon.changes [pilon] Writing updated NODE_2176_length_1040_cov_3.138194_pilon to pilon.fasta [pilon] Writing NODE_2177_length_1039_cov_29.302832:1-1039 changes to pilon.changes [pilon] Writing updated NODE_2177_length_1039_cov_29.302832_pilon to pilon.fasta [pilon] Writing NODE_2178_length_1039_cov_16.369281:1-1039 changes to pilon.changes [pilon] Writing updated NODE_2178_length_1039_cov_16.369281_pilon to pilon.fasta [pilon] Writing NODE_2179_length_1039_cov_2.047930:1-1039 changes to pilon.changes [pilon] Writing updated NODE_2179_length_1039_cov_2.047930_pilon to pilon.fasta [pilon] Writing NODE_2180_length_1039_cov_1.620915:1-1039 changes to pilon.changes [pilon] Writing updated NODE_2180_length_1039_cov_1.620915_pilon to pilon.fasta [pilon] Writing NODE_2181_length_1039_cov_1.335512:1-1039 changes to pilon.changes [pilon] Writing updated NODE_2181_length_1039_cov_1.335512_pilon to pilon.fasta [pilon] Writing NODE_2182_length_1038_cov_29.931298:1-1038 changes to pilon.changes [pilon] Writing updated NODE_2182_length_1038_cov_29.931298_pilon to pilon.fasta [pilon] Writing NODE_2183_length_1038_cov_23.488550:1-1038 changes to pilon.changes [pilon] Writing updated NODE_2183_length_1038_cov_23.488550_pilon to pilon.fasta [pilon] Writing NODE_2184_length_1038_cov_17.841876:1-1038 changes to pilon.changes [pilon] Writing updated NODE_2184_length_1038_cov_17.841876_pilon to pilon.fasta [pilon] Writing NODE_2185_length_1038_cov_14.475463:1-1038 changes to pilon.changes [pilon] Writing updated NODE_2185_length_1038_cov_14.475463_pilon to pilon.fasta [pilon] Writing NODE_2186_length_1037_cov_32.878821:1-1037 changes to pilon.changes [pilon] Writing updated NODE_2186_length_1037_cov_32.878821_pilon to pilon.fasta [pilon] Writing NODE_2187_length_1037_cov_26.323144:1-1037 changes to pilon.changes [pilon] Writing updated NODE_2187_length_1037_cov_26.323144_pilon to pilon.fasta [pilon] Writing NODE_2188_length_1037_cov_15.728166:1-1037 changes to pilon.changes [pilon] Writing updated NODE_2188_length_1037_cov_15.728166_pilon to pilon.fasta [pilon] Writing NODE_2189_length_1037_cov_3.331878:1-1037 changes to pilon.changes [pilon] Writing updated NODE_2189_length_1037_cov_3.331878_pilon to pilon.fasta [pilon] Writing NODE_2190_length_1037_cov_2.803493:1-1037 changes to pilon.changes [pilon] Writing updated NODE_2190_length_1037_cov_2.803493_pilon to pilon.fasta [pilon] Writing NODE_2191_length_1036_cov_36.755191:1-1036 changes to pilon.changes [pilon] Writing updated NODE_2191_length_1036_cov_36.755191_pilon to pilon.fasta [pilon] Writing NODE_2192_length_1036_cov_31.968306:1-1036 changes to pilon.changes [pilon] Writing updated NODE_2192_length_1036_cov_31.968306_pilon to pilon.fasta [pilon] Writing NODE_2193_length_1036_cov_2.550820:1-1036 changes to pilon.changes [pilon] Writing updated NODE_2193_length_1036_cov_2.550820_pilon to pilon.fasta [pilon] Writing NODE_2194_length_1036_cov_2.111475:1-1036 changes to pilon.changes [pilon] Writing updated NODE_2194_length_1036_cov_2.111475_pilon to pilon.fasta [pilon] Writing NODE_2195_length_1035_cov_27.537199:1-1035 changes to pilon.changes [pilon] Writing updated NODE_2195_length_1035_cov_27.537199_pilon to pilon.fasta [pilon] Writing NODE_2196_length_1034_cov_13.470975:1-1034 changes to pilon.changes [pilon] Writing updated NODE_2196_length_1034_cov_13.470975_pilon to pilon.fasta [pilon] Writing NODE_2197_length_1034_cov_6.526835:1-1034 changes to pilon.changes [pilon] Writing updated NODE_2197_length_1034_cov_6.526835_pilon to pilon.fasta [pilon] Writing NODE_2198_length_1034_cov_5.624315:1-1034 changes to pilon.changes [pilon] Writing updated NODE_2198_length_1034_cov_5.624315_pilon to pilon.fasta [pilon] Writing NODE_2199_length_1034_cov_3.634173:1-1034 changes to pilon.changes [pilon] Writing updated NODE_2199_length_1034_cov_3.634173_pilon to pilon.fasta [pilon] Writing NODE_2200_length_1034_cov_2.374589:1-1034 changes to pilon.changes [pilon] Writing updated NODE_2200_length_1034_cov_2.374589_pilon to pilon.fasta [pilon] Writing NODE_2201_length_1033_cov_33.447368:1-1033 changes to pilon.changes [pilon] Writing updated NODE_2201_length_1033_cov_33.447368_pilon to pilon.fasta [pilon] Writing NODE_2202_length_1033_cov_8.756579:1-1033 changes to pilon.changes [pilon] Writing updated NODE_2202_length_1033_cov_8.756579_pilon to pilon.fasta [pilon] Writing NODE_2203_length_1033_cov_2.358553:1-1033 changes to pilon.changes [pilon] Writing updated NODE_2203_length_1033_cov_2.358553_pilon to pilon.fasta [pilon] Writing NODE_2204_length_1032_cov_32.227223:1-1032 changes to pilon.changes [pilon] Writing updated NODE_2204_length_1032_cov_32.227223_pilon to pilon.fasta [pilon] Writing NODE_2205_length_1032_cov_12.228321:1-1032 changes to pilon.changes [pilon] Writing updated NODE_2205_length_1032_cov_12.228321_pilon to pilon.fasta [pilon] Writing NODE_2206_length_1032_cov_1.823271:1-1032 changes to pilon.changes [pilon] Writing updated NODE_2206_length_1032_cov_1.823271_pilon to pilon.fasta [pilon] Writing NODE_2207_length_1032_cov_1.781559:1-1032 changes to pilon.changes [pilon] Writing updated NODE_2207_length_1032_cov_1.781559_pilon to pilon.fasta [pilon] Writing NODE_2208_length_1032_cov_1.386389:1-1032 changes to pilon.changes [pilon] Writing updated NODE_2208_length_1032_cov_1.386389_pilon to pilon.fasta [pilon] Writing NODE_2209_length_1031_cov_27.901099:1-1031 changes to pilon.changes [pilon] Writing updated NODE_2209_length_1031_cov_27.901099_pilon to pilon.fasta [pilon] Writing NODE_2210_length_1031_cov_7.308791:1-1031 changes to pilon.changes [pilon] Writing updated NODE_2210_length_1031_cov_7.308791_pilon to pilon.fasta [pilon] Writing NODE_2211_length_1031_cov_1.786813:1-1031 changes to pilon.changes [pilon] Writing updated NODE_2211_length_1031_cov_1.786813_pilon to pilon.fasta [pilon] Writing NODE_2212_length_1031_cov_1.149451:1-1031 changes to pilon.changes [pilon] Writing updated NODE_2212_length_1031_cov_1.149451_pilon to pilon.fasta [pilon] Writing NODE_2213_length_1030_cov_17.972497:1-1030 changes to pilon.changes [pilon] Writing updated NODE_2213_length_1030_cov_17.972497_pilon to pilon.fasta [pilon] Writing NODE_2214_length_1030_cov_2.966997:1-1030 changes to pilon.changes [pilon] Writing updated NODE_2214_length_1030_cov_2.966997_pilon to pilon.fasta [pilon] Writing NODE_2215_length_1029_cov_22.694934:1-1029 changes to pilon.changes [pilon] Writing updated NODE_2215_length_1029_cov_22.694934_pilon to pilon.fasta [pilon] Writing NODE_2216_length_1029_cov_22.536344:1-1029 changes to pilon.changes [pilon] Writing updated NODE_2216_length_1029_cov_22.536344_pilon to pilon.fasta [pilon] Writing NODE_2217_length_1029_cov_22.463656:1-1029 changes to pilon.changes [pilon] Writing updated NODE_2217_length_1029_cov_22.463656_pilon to pilon.fasta [pilon] Writing NODE_2218_length_1029_cov_22.005507:1-1029 changes to pilon.changes [pilon] Writing updated NODE_2218_length_1029_cov_22.005507_pilon to pilon.fasta [pilon] Writing NODE_2219_length_1029_cov_18.376652:1-1029 changes to pilon.changes [pilon] Writing updated NODE_2219_length_1029_cov_18.376652_pilon to pilon.fasta [pilon] Writing NODE_2220_length_1029_cov_3.564978:1-1029 changes to pilon.changes [pilon] Writing updated NODE_2220_length_1029_cov_3.564978_pilon to pilon.fasta [pilon] Writing NODE_2221_length_1029_cov_2.582599:1-1029 changes to pilon.changes [pilon] Writing updated NODE_2221_length_1029_cov_2.582599_pilon to pilon.fasta [pilon] Writing NODE_2222_length_1028_cov_44.898567:1-1028 changes to pilon.changes [pilon] Writing updated NODE_2222_length_1028_cov_44.898567_pilon to pilon.fasta [pilon] Writing NODE_2223_length_1028_cov_10.703418:1-1028 changes to pilon.changes [pilon] Writing updated NODE_2223_length_1028_cov_10.703418_pilon to pilon.fasta [pilon] Writing NODE_2224_length_1028_cov_6.533627:1-1028 changes to pilon.changes [pilon] Writing updated NODE_2224_length_1028_cov_6.533627_pilon to pilon.fasta [pilon] Writing NODE_2225_length_1027_cov_31.438190:1-1027 changes to pilon.changes [pilon] Writing updated NODE_2225_length_1027_cov_31.438190_pilon to pilon.fasta [pilon] Writing NODE_2226_length_1027_cov_30.949227:1-1027 changes to pilon.changes [pilon] Writing updated NODE_2226_length_1027_cov_30.949227_pilon to pilon.fasta [pilon] Writing NODE_2227_length_1026_cov_28.041989:1-1026 changes to pilon.changes [pilon] Writing updated NODE_2227_length_1026_cov_28.041989_pilon to pilon.fasta [pilon] Writing NODE_2228_length_1026_cov_4.552486:1-1026 changes to pilon.changes [pilon] Writing updated NODE_2228_length_1026_cov_4.552486_pilon to pilon.fasta [pilon] Writing NODE_2229_length_1026_cov_1.809945:1-1026 changes to pilon.changes [pilon] Writing updated NODE_2229_length_1026_cov_1.809945_pilon to pilon.fasta [pilon] Writing NODE_2230_length_1026_cov_1.723757:1-1026 changes to pilon.changes [pilon] Writing updated NODE_2230_length_1026_cov_1.723757_pilon to pilon.fasta [pilon] Writing NODE_2231_length_1025_cov_53.915929:1-1025 changes to pilon.changes [pilon] Writing updated NODE_2231_length_1025_cov_53.915929_pilon to pilon.fasta [pilon] Writing NODE_2232_length_1025_cov_2.402655:1-1025 changes to pilon.changes [pilon] Writing updated NODE_2232_length_1025_cov_2.402655_pilon to pilon.fasta [pilon] Writing NODE_2233_length_1025_cov_0.936947:1-1025 changes to pilon.changes [pilon] Writing updated NODE_2233_length_1025_cov_0.936947_pilon to pilon.fasta [pilon] Writing NODE_2234_length_1024_cov_26.361019:1-1024 changes to pilon.changes [pilon] Writing updated NODE_2234_length_1024_cov_26.361019_pilon to pilon.fasta [pilon] Writing NODE_2235_length_1023_cov_36.348115:1-1023 changes to pilon.changes [pilon] Writing updated NODE_2235_length_1023_cov_36.348115_pilon to pilon.fasta [pilon] Writing NODE_2236_length_1023_cov_26.196231:1-1023 changes to pilon.changes [pilon] Writing updated NODE_2236_length_1023_cov_26.196231_pilon to pilon.fasta [pilon] Writing NODE_2237_length_1023_cov_6.003326:1-1023 changes to pilon.changes [pilon] Writing updated NODE_2237_length_1023_cov_6.003326_pilon to pilon.fasta [pilon] Writing NODE_2238_length_1022_cov_32.932297:1-1022 changes to pilon.changes [pilon] Writing updated NODE_2238_length_1022_cov_32.932297_pilon to pilon.fasta [pilon] Writing NODE_2239_length_1022_cov_25.743618:1-1022 changes to pilon.changes [pilon] Writing updated NODE_2239_length_1022_cov_25.743618_pilon to pilon.fasta [pilon] Writing NODE_2240_length_1022_cov_24.900111:1-1022 changes to pilon.changes [pilon] Writing updated NODE_2240_length_1022_cov_24.900111_pilon to pilon.fasta [pilon] Writing NODE_2241_length_1022_cov_17.386238:1-1022 changes to pilon.changes [pilon] Writing updated NODE_2241_length_1022_cov_17.386238_pilon to pilon.fasta [pilon] Writing NODE_2242_length_1022_cov_13.077691:1-1022 changes to pilon.changes [pilon] Writing updated NODE_2242_length_1022_cov_13.077691_pilon to pilon.fasta [pilon] Writing NODE_2243_length_1022_cov_2.834628:1-1022 changes to pilon.changes [pilon] Writing updated NODE_2243_length_1022_cov_2.834628_pilon to pilon.fasta [pilon] Writing NODE_2244_length_1022_cov_1.241953:1-1022 changes to pilon.changes [pilon] Writing updated NODE_2244_length_1022_cov_1.241953_pilon to pilon.fasta [pilon] Writing NODE_2245_length_1021_cov_32.243333:1-1021 changes to pilon.changes [pilon] Writing updated NODE_2245_length_1021_cov_32.243333_pilon to pilon.fasta [pilon] Writing NODE_2246_length_1021_cov_7.406667:1-1021 changes to pilon.changes [pilon] Writing updated NODE_2246_length_1021_cov_7.406667_pilon to pilon.fasta [pilon] Writing NODE_2247_length_1021_cov_3.342222:1-1021 changes to pilon.changes [pilon] Writing updated NODE_2247_length_1021_cov_3.342222_pilon to pilon.fasta [pilon] Writing NODE_2248_length_1021_cov_2.616667:1-1021 changes to pilon.changes [pilon] Writing updated NODE_2248_length_1021_cov_2.616667_pilon to pilon.fasta [pilon] Writing NODE_2249_length_1021_cov_2.033333:1-1021 changes to pilon.changes [pilon] Writing updated NODE_2249_length_1021_cov_2.033333_pilon to pilon.fasta [pilon] Writing NODE_2250_length_1021_cov_2.028889:1-1021 changes to pilon.changes [pilon] Writing updated NODE_2250_length_1021_cov_2.028889_pilon to pilon.fasta [pilon] Writing NODE_2251_length_1020_cov_32.173526:1-1020 changes to pilon.changes [pilon] Writing updated NODE_2251_length_1020_cov_32.173526_pilon to pilon.fasta [pilon] Writing NODE_2252_length_1020_cov_24.679644:1-1020 changes to pilon.changes [pilon] Writing updated NODE_2252_length_1020_cov_24.679644_pilon to pilon.fasta [pilon] Writing NODE_2253_length_1020_cov_23.403782:1-1020 changes to pilon.changes [pilon] Writing updated NODE_2253_length_1020_cov_23.403782_pilon to pilon.fasta [pilon] Writing NODE_2254_length_1020_cov_2.886541:1-1020 changes to pilon.changes [pilon] Writing updated NODE_2254_length_1020_cov_2.886541_pilon to pilon.fasta [pilon] Writing NODE_2255_length_1020_cov_2.793103:1-1020 changes to pilon.changes [pilon] Writing updated NODE_2255_length_1020_cov_2.793103_pilon to pilon.fasta [pilon] Writing NODE_2256_length_1020_cov_2.678532:1-1020 changes to pilon.changes [pilon] Writing updated NODE_2256_length_1020_cov_2.678532_pilon to pilon.fasta [pilon] Writing NODE_2257_length_1020_cov_1.711902:1-1020 changes to pilon.changes [pilon] Writing updated NODE_2257_length_1020_cov_1.711902_pilon to pilon.fasta [pilon] Writing NODE_2258_length_1019_cov_45.335189:1-1019 changes to pilon.changes [pilon] Writing updated NODE_2258_length_1019_cov_45.335189_pilon to pilon.fasta [pilon] Writing NODE_2259_length_1019_cov_36.375278:1-1019 changes to pilon.changes [pilon] Writing updated NODE_2259_length_1019_cov_36.375278_pilon to pilon.fasta [pilon] Writing NODE_2260_length_1019_cov_18.144766:1-1019 changes to pilon.changes [pilon] Writing updated NODE_2260_length_1019_cov_18.144766_pilon to pilon.fasta [pilon] Writing NODE_2261_length_1019_cov_17.596882:1-1019 changes to pilon.changes [pilon] Writing updated NODE_2261_length_1019_cov_17.596882_pilon to pilon.fasta [pilon] Writing NODE_2262_length_1019_cov_10.096882:1-1019 changes to pilon.changes [pilon] Writing updated NODE_2262_length_1019_cov_10.096882_pilon to pilon.fasta [pilon] Writing NODE_2263_length_1018_cov_12.688963:1-1018 changes to pilon.changes [pilon] Writing updated NODE_2263_length_1018_cov_12.688963_pilon to pilon.fasta [pilon] Writing NODE_2264_length_1018_cov_11.680045:1-1018 changes to pilon.changes [pilon] Writing updated NODE_2264_length_1018_cov_11.680045_pilon to pilon.fasta [pilon] Writing NODE_2265_length_1018_cov_1.086957:1-1018 changes to pilon.changes [pilon] Writing updated NODE_2265_length_1018_cov_1.086957_pilon to pilon.fasta [pilon] Writing NODE_2266_length_1017_cov_37.493304:1-1017 changes to pilon.changes [pilon] Writing updated NODE_2266_length_1017_cov_37.493304_pilon to pilon.fasta [pilon] Writing NODE_2267_length_1017_cov_37.296875:1-1017 changes to pilon.changes [pilon] Writing updated NODE_2267_length_1017_cov_37.296875_pilon to pilon.fasta [pilon] Writing NODE_2268_length_1017_cov_30.256696:1-1017 changes to pilon.changes [pilon] Writing updated NODE_2268_length_1017_cov_30.256696_pilon to pilon.fasta [pilon] Writing NODE_2269_length_1017_cov_21.752232:1-1017 changes to pilon.changes [pilon] Writing updated NODE_2269_length_1017_cov_21.752232_pilon to pilon.fasta [pilon] Writing NODE_2270_length_1017_cov_20.770089:1-1017 changes to pilon.changes [pilon] Writing updated NODE_2270_length_1017_cov_20.770089_pilon to pilon.fasta [pilon] Writing NODE_2271_length_1017_cov_18.614955:1-1017 changes to pilon.changes [pilon] Writing updated NODE_2271_length_1017_cov_18.614955_pilon to pilon.fasta [pilon] Writing NODE_2272_length_1016_cov_10.841341:1-1016 changes to pilon.changes [pilon] Writing updated NODE_2272_length_1016_cov_10.841341_pilon to pilon.fasta [pilon] Writing NODE_2273_length_1016_cov_3.294972:1-1016 changes to pilon.changes [pilon] Writing updated NODE_2273_length_1016_cov_3.294972_pilon to pilon.fasta [pilon] Writing NODE_2274_length_1016_cov_3.138547:1-1016 changes to pilon.changes [pilon] Writing updated NODE_2274_length_1016_cov_3.138547_pilon to pilon.fasta [pilon] Writing NODE_2275_length_1016_cov_2.603352:1-1016 changes to pilon.changes [pilon] Writing updated NODE_2275_length_1016_cov_2.603352_pilon to pilon.fasta [pilon] Writing NODE_2276_length_1016_cov_2.388827:1-1016 changes to pilon.changes [pilon] Writing updated NODE_2276_length_1016_cov_2.388827_pilon to pilon.fasta [pilon] Writing NODE_2277_length_1015_cov_34.492170:1-1015 changes to pilon.changes [pilon] Writing updated NODE_2277_length_1015_cov_34.492170_pilon to pilon.fasta [pilon] Writing NODE_2278_length_1015_cov_23.448546:1-1015 changes to pilon.changes [pilon] Writing updated NODE_2278_length_1015_cov_23.448546_pilon to pilon.fasta [pilon] Writing NODE_2279_length_1015_cov_21.014541:1-1015 changes to pilon.changes [pilon] Writing updated NODE_2279_length_1015_cov_21.014541_pilon to pilon.fasta [pilon] Writing NODE_2280_length_1015_cov_15.312081:1-1015 changes to pilon.changes [pilon] Writing updated NODE_2280_length_1015_cov_15.312081_pilon to pilon.fasta [pilon] Writing NODE_2281_length_1015_cov_14.873602:1-1015 changes to pilon.changes [pilon] Writing updated NODE_2281_length_1015_cov_14.873602_pilon to pilon.fasta [pilon] Writing NODE_2282_length_1014_cov_40.473684:1-1014 changes to pilon.changes [pilon] Writing updated NODE_2282_length_1014_cov_40.473684_pilon to pilon.fasta [pilon] Writing NODE_2283_length_1014_cov_28.019037:1-1014 changes to pilon.changes [pilon] Writing updated NODE_2283_length_1014_cov_28.019037_pilon to pilon.fasta [pilon] Writing NODE_2284_length_1014_cov_27.167973:1-1014 changes to pilon.changes [pilon] Writing updated NODE_2284_length_1014_cov_27.167973_pilon to pilon.fasta [pilon] Writing NODE_2285_length_1014_cov_22.057111:1-1014 changes to pilon.changes [pilon] Writing updated NODE_2285_length_1014_cov_22.057111_pilon to pilon.fasta [pilon] Writing NODE_2286_length_1014_cov_14.397536:1-1014 changes to pilon.changes [pilon] Writing updated NODE_2286_length_1014_cov_14.397536_pilon to pilon.fasta [pilon] Writing NODE_2287_length_1014_cov_11.351624:1-1014 changes to pilon.changes [pilon] Writing updated NODE_2287_length_1014_cov_11.351624_pilon to pilon.fasta [pilon] Writing NODE_2288_length_1014_cov_5.590146:1-1014 changes to pilon.changes [pilon] Writing updated NODE_2288_length_1014_cov_5.590146_pilon to pilon.fasta [pilon] Writing NODE_2289_length_1014_cov_2.900336:1-1014 changes to pilon.changes [pilon] Writing updated NODE_2289_length_1014_cov_2.900336_pilon to pilon.fasta [pilon] Writing NODE_2290_length_1013_cov_19.639013:1-1013 changes to pilon.changes [pilon] Writing updated NODE_2290_length_1013_cov_19.639013_pilon to pilon.fasta [pilon] Writing NODE_2291_length_1013_cov_17.983184:1-1013 changes to pilon.changes [pilon] Writing updated NODE_2291_length_1013_cov_17.983184_pilon to pilon.fasta [pilon] Writing NODE_2292_length_1012_cov_46.120090:1-1012 changes to pilon.changes [pilon] Writing updated NODE_2292_length_1012_cov_46.120090_pilon to pilon.fasta [pilon] Writing NODE_2293_length_1012_cov_20.764310:1-1012 changes to pilon.changes [pilon] Writing updated NODE_2293_length_1012_cov_20.764310_pilon to pilon.fasta [pilon] Writing NODE_2294_length_1012_cov_20.430976:1-1012 changes to pilon.changes [pilon] Writing updated NODE_2294_length_1012_cov_20.430976_pilon to pilon.fasta [pilon] Writing NODE_2295_length_1012_cov_10.810325:1-1012 changes to pilon.changes [pilon] Writing updated NODE_2295_length_1012_cov_10.810325_pilon to pilon.fasta [pilon] Writing NODE_2296_length_1012_cov_2.744108:1-1012 changes to pilon.changes [pilon] Writing updated NODE_2296_length_1012_cov_2.744108_pilon to pilon.fasta [pilon] Writing NODE_2297_length_1011_cov_24.757303:1-1011 changes to pilon.changes [pilon] Writing updated NODE_2297_length_1011_cov_24.757303_pilon to pilon.fasta [pilon] Writing NODE_2298_length_1011_cov_24.239326:1-1011 changes to pilon.changes [pilon] Writing updated NODE_2298_length_1011_cov_24.239326_pilon to pilon.fasta [pilon] Writing NODE_2299_length_1011_cov_15.803371:1-1011 changes to pilon.changes [pilon] Writing updated NODE_2299_length_1011_cov_15.803371_pilon to pilon.fasta [pilon] Writing NODE_2300_length_1011_cov_15.152809:1-1011 changes to pilon.changes [pilon] Writing updated NODE_2300_length_1011_cov_15.152809_pilon to pilon.fasta [pilon] Writing NODE_2301_length_1011_cov_1.886517:1-1011 changes to pilon.changes [pilon] Writing updated NODE_2301_length_1011_cov_1.886517_pilon to pilon.fasta [pilon] Writing NODE_2302_length_1011_cov_1.696629:1-1011 changes to pilon.changes [pilon] Writing updated NODE_2302_length_1011_cov_1.696629_pilon to pilon.fasta [pilon] Writing NODE_2303_length_1010_cov_9.800900:1-1010 changes to pilon.changes [pilon] Writing updated NODE_2303_length_1010_cov_9.800900_pilon to pilon.fasta [pilon] Writing NODE_2304_length_1009_cov_23.011261:1-1009 changes to pilon.changes [pilon] Writing updated NODE_2304_length_1009_cov_23.011261_pilon to pilon.fasta [pilon] Writing NODE_2305_length_1009_cov_10.860360:1-1009 changes to pilon.changes [pilon] Writing updated NODE_2305_length_1009_cov_10.860360_pilon to pilon.fasta [pilon] Writing NODE_2306_length_1009_cov_9.311937:1-1009 changes to pilon.changes [pilon] Writing updated NODE_2306_length_1009_cov_9.311937_pilon to pilon.fasta [pilon] Writing NODE_2307_length_1009_cov_7.118243:1-1009 changes to pilon.changes [pilon] Writing updated NODE_2307_length_1009_cov_7.118243_pilon to pilon.fasta [pilon] Writing NODE_2308_length_1008_cov_22.817362:1-1008 changes to pilon.changes [pilon] Writing updated NODE_2308_length_1008_cov_22.817362_pilon to pilon.fasta [pilon] Writing NODE_2309_length_1008_cov_18.519729:1-1008 changes to pilon.changes [pilon] Writing updated NODE_2309_length_1008_cov_18.519729_pilon to pilon.fasta [pilon] Writing NODE_2310_length_1008_cov_17.703495:1-1008 changes to pilon.changes [pilon] Writing updated NODE_2310_length_1008_cov_17.703495_pilon to pilon.fasta [pilon] Writing NODE_2311_length_1008_cov_8.768884:1-1008 changes to pilon.changes [pilon] Writing updated NODE_2311_length_1008_cov_8.768884_pilon to pilon.fasta [pilon] Writing NODE_2312_length_1007_cov_28.597065:1-1007 changes to pilon.changes [pilon] Writing updated NODE_2312_length_1007_cov_28.597065_pilon to pilon.fasta [pilon] Writing NODE_2313_length_1007_cov_24.009029:1-1007 changes to pilon.changes [pilon] Writing updated NODE_2313_length_1007_cov_24.009029_pilon to pilon.fasta [pilon] Writing NODE_2314_length_1007_cov_22.266366:1-1007 changes to pilon.changes [pilon] Writing updated NODE_2314_length_1007_cov_22.266366_pilon to pilon.fasta [pilon] Writing NODE_2315_length_1007_cov_17.783296:1-1007 changes to pilon.changes [pilon] Writing updated NODE_2315_length_1007_cov_17.783296_pilon to pilon.fasta [pilon] Writing NODE_2316_length_1007_cov_2.934537:1-1007 changes to pilon.changes [pilon] Writing updated NODE_2316_length_1007_cov_2.934537_pilon to pilon.fasta [pilon] Writing NODE_2317_length_1007_cov_1.954853:1-1007 changes to pilon.changes [pilon] Writing updated NODE_2317_length_1007_cov_1.954853_pilon to pilon.fasta [pilon] Writing NODE_2318_length_1007_cov_0.743792:1-1007 changes to pilon.changes [pilon] Writing updated NODE_2318_length_1007_cov_0.743792_pilon to pilon.fasta [pilon] Writing NODE_2319_length_1006_cov_25.089266:1-1006 changes to pilon.changes [pilon] Writing updated NODE_2319_length_1006_cov_25.089266_pilon to pilon.fasta [pilon] Writing NODE_2320_length_1006_cov_22.229379:1-1006 changes to pilon.changes [pilon] Writing updated NODE_2320_length_1006_cov_22.229379_pilon to pilon.fasta [pilon] Writing NODE_2321_length_1006_cov_15.597740:1-1006 changes to pilon.changes [pilon] Writing updated NODE_2321_length_1006_cov_15.597740_pilon to pilon.fasta [pilon] Writing NODE_2322_length_1005_cov_27.458145:1-1005 changes to pilon.changes [pilon] Writing updated NODE_2322_length_1005_cov_27.458145_pilon to pilon.fasta [pilon] Writing NODE_2323_length_1005_cov_24.429864:1-1005 changes to pilon.changes [pilon] Writing updated NODE_2323_length_1005_cov_24.429864_pilon to pilon.fasta [pilon] Writing NODE_2324_length_1005_cov_20.830317:1-1005 changes to pilon.changes [pilon] Writing updated NODE_2324_length_1005_cov_20.830317_pilon to pilon.fasta [pilon] Writing NODE_2325_length_1005_cov_10.355204:1-1005 changes to pilon.changes [pilon] Writing updated NODE_2325_length_1005_cov_10.355204_pilon to pilon.fasta [pilon] Writing NODE_2326_length_1005_cov_4.313348:1-1005 changes to pilon.changes [pilon] Writing updated NODE_2326_length_1005_cov_4.313348_pilon to pilon.fasta [pilon] Writing NODE_2327_length_1005_cov_1.565611:1-1005 changes to pilon.changes [pilon] Writing updated NODE_2327_length_1005_cov_1.565611_pilon to pilon.fasta [pilon] Writing NODE_2328_length_1005_cov_1.343891:1-1005 changes to pilon.changes [pilon] Writing updated NODE_2328_length_1005_cov_1.343891_pilon to pilon.fasta [pilon] Writing NODE_2329_length_1004_cov_39.768969:1-1004 changes to pilon.changes [pilon] Writing updated NODE_2329_length_1004_cov_39.768969_pilon to pilon.fasta [pilon] Writing NODE_2330_length_1004_cov_29.557191:1-1004 changes to pilon.changes [pilon] Writing updated NODE_2330_length_1004_cov_29.557191_pilon to pilon.fasta [pilon] Writing NODE_2331_length_1004_cov_16.648924:1-1004 changes to pilon.changes [pilon] Writing updated NODE_2331_length_1004_cov_16.648924_pilon to pilon.fasta [pilon] Writing NODE_2332_length_1004_cov_12.698754:1-1004 changes to pilon.changes [pilon] Writing updated NODE_2332_length_1004_cov_12.698754_pilon to pilon.fasta [pilon] Writing NODE_2333_length_1004_cov_7.485844:1-1004 changes to pilon.changes [pilon] Writing updated NODE_2333_length_1004_cov_7.485844_pilon to pilon.fasta [pilon] Writing NODE_2334_length_1004_cov_1.635334:1-1004 changes to pilon.changes [pilon] Writing updated NODE_2334_length_1004_cov_1.635334_pilon to pilon.fasta [pilon] Writing NODE_2335_length_1004_cov_0.890147:1-1004 changes to pilon.changes [pilon] Writing updated NODE_2335_length_1004_cov_0.890147_pilon to pilon.fasta [pilon] Writing NODE_2336_length_1003_cov_20.337868:1-1003 changes to pilon.changes [pilon] Writing updated NODE_2336_length_1003_cov_20.337868_pilon to pilon.fasta [pilon] Writing NODE_2337_length_1003_cov_12.130385:1-1003 changes to pilon.changes [pilon] Writing updated NODE_2337_length_1003_cov_12.130385_pilon to pilon.fasta [pilon] Writing NODE_2338_length_1003_cov_9.094104:1-1003 changes to pilon.changes [pilon] Writing updated NODE_2338_length_1003_cov_9.094104_pilon to pilon.fasta [pilon] Writing NODE_2339_length_1003_cov_1.894558:1-1003 changes to pilon.changes [pilon] Writing updated NODE_2339_length_1003_cov_1.894558_pilon to pilon.fasta [pilon] Writing NODE_2340_length_1002_cov_27.104427:1-1002 changes to pilon.changes [pilon] Writing updated NODE_2340_length_1002_cov_27.104427_pilon to pilon.fasta [pilon] Writing NODE_2341_length_1002_cov_23.875142:1-1002 changes to pilon.changes [pilon] Writing updated NODE_2341_length_1002_cov_23.875142_pilon to pilon.fasta [pilon] Writing NODE_2342_length_1002_cov_13.465380:1-1002 changes to pilon.changes [pilon] Writing updated NODE_2342_length_1002_cov_13.465380_pilon to pilon.fasta [pilon] Writing NODE_2343_length_1002_cov_9.877412:1-1002 changes to pilon.changes [pilon] Writing updated NODE_2343_length_1002_cov_9.877412_pilon to pilon.fasta [pilon] Writing NODE_2344_length_1002_cov_1.137344:1-1002 changes to pilon.changes [pilon] Writing updated NODE_2344_length_1002_cov_1.137344_pilon to pilon.fasta [pilon] Writing NODE_2345_length_1001_cov_23.137500:1-1001 changes to pilon.changes [pilon] Writing updated NODE_2345_length_1001_cov_23.137500_pilon to pilon.fasta [pilon] Writing NODE_2346_length_1001_cov_22.434091:1-1001 changes to pilon.changes [pilon] Writing updated NODE_2346_length_1001_cov_22.434091_pilon to pilon.fasta [pilon] Writing NODE_2347_length_1001_cov_20.515909:1-1001 changes to pilon.changes [pilon] Writing updated NODE_2347_length_1001_cov_20.515909_pilon to pilon.fasta [pilon] Writing NODE_2348_length_1001_cov_15.206818:1-1001 changes to pilon.changes [pilon] Writing updated NODE_2348_length_1001_cov_15.206818_pilon to pilon.fasta [pilon] Writing NODE_2349_length_1001_cov_13.861364:1-1001 changes to pilon.changes [pilon] Writing updated NODE_2349_length_1001_cov_13.861364_pilon to pilon.fasta [pilon] Writing NODE_2350_length_1000_cov_28.688282:1-1000 changes to pilon.changes [pilon] Writing updated NODE_2350_length_1000_cov_28.688282_pilon to pilon.fasta [pilon] Writing NODE_2351_length_1000_cov_28.044369:1-1000 changes to pilon.changes [pilon] Writing updated NODE_2351_length_1000_cov_28.044369_pilon to pilon.fasta [pilon] Writing NODE_2352_length_1000_cov_18.953356:1-1000 changes to pilon.changes [pilon] Writing updated NODE_2352_length_1000_cov_18.953356_pilon to pilon.fasta [pilon] Writing NODE_2353_length_1000_cov_18.806598:1-1000 changes to pilon.changes [pilon] Writing updated NODE_2353_length_1000_cov_18.806598_pilon to pilon.fasta [pilon] Writing NODE_2354_length_1000_cov_16.770193:1-1000 changes to pilon.changes [pilon] Writing updated NODE_2354_length_1000_cov_16.770193_pilon to pilon.fasta [pilon] Writing NODE_2355_length_1000_cov_2.930603:1-1000 changes to pilon.changes [pilon] Writing updated NODE_2355_length_1000_cov_2.930603_pilon to pilon.fasta [pilon] Writing NODE_2356_length_1000_cov_1.952218:1-1000 changes to pilon.changes [pilon] Writing updated NODE_2356_length_1000_cov_1.952218_pilon to pilon.fasta [pilon] Writing NODE_2357_length_1000_cov_1.386803:1-1000 changes to pilon.changes [pilon] Writing updated NODE_2357_length_1000_cov_1.386803_pilon to pilon.fasta [pilon] Writing NODE_2358_length_999_cov_11.348519:1-999 changes to pilon.changes [pilon] Writing updated NODE_2358_length_999_cov_11.348519_pilon to pilon.fasta [pilon] Writing NODE_2359_length_999_cov_3.201595:1-999 changes to pilon.changes [pilon] Writing updated NODE_2359_length_999_cov_3.201595_pilon to pilon.fasta [pilon] Writing NODE_2360_length_999_cov_2.839408:1-999 changes to pilon.changes [pilon] Writing updated NODE_2360_length_999_cov_2.839408_pilon to pilon.fasta [pilon] Writing NODE_2361_length_999_cov_2.173121:1-999 changes to pilon.changes [pilon] Writing updated NODE_2361_length_999_cov_2.173121_pilon to pilon.fasta [pilon] Writing NODE_2362_length_999_cov_1.986333:1-999 changes to pilon.changes [pilon] Writing updated NODE_2362_length_999_cov_1.986333_pilon to pilon.fasta [pilon] Writing NODE_2363_length_999_cov_1.719818:1-999 changes to pilon.changes [pilon] Writing updated NODE_2363_length_999_cov_1.719818_pilon to pilon.fasta [pilon] Writing NODE_2364_length_998_cov_45.214367:1-998 changes to pilon.changes [pilon] Writing updated NODE_2364_length_998_cov_45.214367_pilon to pilon.fasta [pilon] Writing NODE_2365_length_998_cov_28.718358:1-998 changes to pilon.changes [pilon] Writing updated NODE_2365_length_998_cov_28.718358_pilon to pilon.fasta [pilon] Writing NODE_2366_length_998_cov_27.647662:1-998 changes to pilon.changes [pilon] Writing updated NODE_2366_length_998_cov_27.647662_pilon to pilon.fasta [pilon] Writing NODE_2367_length_998_cov_17.794755:1-998 changes to pilon.changes [pilon] Writing updated NODE_2367_length_998_cov_17.794755_pilon to pilon.fasta [pilon] Writing NODE_2368_length_998_cov_16.342075:1-998 changes to pilon.changes [pilon] Writing updated NODE_2368_length_998_cov_16.342075_pilon to pilon.fasta [pilon] Writing NODE_2369_length_998_cov_9.152794:1-998 changes to pilon.changes [pilon] Writing updated NODE_2369_length_998_cov_9.152794_pilon to pilon.fasta [pilon] Writing NODE_2370_length_998_cov_8.940707:1-998 changes to pilon.changes [pilon] Writing updated NODE_2370_length_998_cov_8.940707_pilon to pilon.fasta [pilon] Writing NODE_2371_length_998_cov_2.590650:1-998 changes to pilon.changes [pilon] Writing updated NODE_2371_length_998_cov_2.590650_pilon to pilon.fasta [pilon] Writing NODE_2372_length_997_cov_15.375571:1-997 changes to pilon.changes [pilon] Writing updated NODE_2372_length_997_cov_15.375571_pilon to pilon.fasta [pilon] Writing NODE_2373_length_996_cov_20.061714:1-996 changes to pilon.changes [pilon] Writing updated NODE_2373_length_996_cov_20.061714_pilon to pilon.fasta [pilon] Writing NODE_2374_length_996_cov_19.178286:1-996 changes to pilon.changes [pilon] Writing updated NODE_2374_length_996_cov_19.178286_pilon to pilon.fasta [pilon] Writing NODE_2375_length_996_cov_2.756571:1-996 changes to pilon.changes [pilon] Writing updated NODE_2375_length_996_cov_2.756571_pilon to pilon.fasta [pilon] Writing NODE_2376_length_995_cov_33.667048:1-995 changes to pilon.changes [pilon] Writing updated NODE_2376_length_995_cov_33.667048_pilon to pilon.fasta [pilon] Writing NODE_2377_length_995_cov_15.451945:1-995 changes to pilon.changes [pilon] Writing updated NODE_2377_length_995_cov_15.451945_pilon to pilon.fasta [pilon] Writing NODE_2378_length_995_cov_2.395881:1-995 changes to pilon.changes [pilon] Writing updated NODE_2378_length_995_cov_2.395881_pilon to pilon.fasta [pilon] Writing NODE_2379_length_995_cov_0.948513:1-995 changes to pilon.changes [pilon] Writing updated NODE_2379_length_995_cov_0.948513_pilon to pilon.fasta [pilon] Writing NODE_2380_length_994_cov_24.017182:1-994 changes to pilon.changes [pilon] Writing updated NODE_2380_length_994_cov_24.017182_pilon to pilon.fasta [pilon] Writing NODE_2381_length_994_cov_23.544101:1-994 changes to pilon.changes [pilon] Writing updated NODE_2381_length_994_cov_23.544101_pilon to pilon.fasta [pilon] Writing NODE_2382_length_994_cov_13.552119:1-994 changes to pilon.changes [pilon] Writing updated NODE_2382_length_994_cov_13.552119_pilon to pilon.fasta [pilon] Writing NODE_2383_length_994_cov_3.052692:1-994 changes to pilon.changes [pilon] Writing updated NODE_2383_length_994_cov_3.052692_pilon to pilon.fasta [pilon] Writing NODE_2384_length_993_cov_28.670872:1-993 changes to pilon.changes [pilon] Writing updated NODE_2384_length_993_cov_28.670872_pilon to pilon.fasta [pilon] Writing NODE_2385_length_993_cov_2.292431:1-993 changes to pilon.changes [pilon] Writing updated NODE_2385_length_993_cov_2.292431_pilon to pilon.fasta [pilon] Writing NODE_2386_length_993_cov_1.769495:1-993 changes to pilon.changes [pilon] Writing updated NODE_2386_length_993_cov_1.769495_pilon to pilon.fasta [pilon] Writing NODE_2387_length_992_cov_59.874856:1-992 changes to pilon.changes [pilon] Writing updated NODE_2387_length_992_cov_59.874856_pilon to pilon.fasta [pilon] Writing NODE_2388_length_992_cov_24.051665:1-992 changes to pilon.changes [pilon] Writing updated NODE_2388_length_992_cov_24.051665_pilon to pilon.fasta [pilon] Writing NODE_2389_length_992_cov_2.649828:1-992 changes to pilon.changes [pilon] Writing updated NODE_2389_length_992_cov_2.649828_pilon to pilon.fasta [pilon] Writing NODE_2390_length_991_cov_40.324138:1-991 changes to pilon.changes [pilon] Writing updated NODE_2390_length_991_cov_40.324138_pilon to pilon.fasta [pilon] Writing NODE_2391_length_991_cov_26.452874:1-991 changes to pilon.changes [pilon] Writing updated NODE_2391_length_991_cov_26.452874_pilon to pilon.fasta [pilon] Writing NODE_2392_length_991_cov_25.967816:1-991 changes to pilon.changes [pilon] Writing updated NODE_2392_length_991_cov_25.967816_pilon to pilon.fasta [pilon] Writing NODE_2393_length_991_cov_19.044828:1-991 changes to pilon.changes [pilon] Writing updated NODE_2393_length_991_cov_19.044828_pilon to pilon.fasta [pilon] Writing NODE_2394_length_991_cov_14.641379:1-991 changes to pilon.changes [pilon] Writing updated NODE_2394_length_991_cov_14.641379_pilon to pilon.fasta [pilon] Writing NODE_2395_length_991_cov_14.139080:1-991 changes to pilon.changes [pilon] Writing updated NODE_2395_length_991_cov_14.139080_pilon to pilon.fasta [pilon] Writing NODE_2396_length_991_cov_14.110345:1-991 changes to pilon.changes [pilon] Writing updated NODE_2396_length_991_cov_14.110345_pilon to pilon.fasta [pilon] Writing NODE_2397_length_991_cov_1.271264:1-991 changes to pilon.changes [pilon] Writing updated NODE_2397_length_991_cov_1.271264_pilon to pilon.fasta [pilon] Writing NODE_2398_length_990_cov_32.148446:1-990 changes to pilon.changes [pilon] Writing updated NODE_2398_length_990_cov_32.148446_pilon to pilon.fasta [pilon] Writing NODE_2399_length_990_cov_27.869965:1-990 changes to pilon.changes [pilon] Writing updated NODE_2399_length_990_cov_27.869965_pilon to pilon.fasta [pilon] Writing NODE_2400_length_990_cov_21.706559:1-990 changes to pilon.changes [pilon] Writing updated NODE_2400_length_990_cov_21.706559_pilon to pilon.fasta [pilon] Writing NODE_2401_length_990_cov_20.658228:1-990 changes to pilon.changes [pilon] Writing updated NODE_2401_length_990_cov_20.658228_pilon to pilon.fasta [pilon] Writing NODE_2402_length_990_cov_20.116226:1-990 changes to pilon.changes [pilon] Writing updated NODE_2402_length_990_cov_20.116226_pilon to pilon.fasta [pilon] Writing NODE_2403_length_990_cov_14.084005:1-990 changes to pilon.changes [pilon] Writing updated NODE_2403_length_990_cov_14.084005_pilon to pilon.fasta [pilon] Writing NODE_2404_length_990_cov_11.733026:1-990 changes to pilon.changes [pilon] Writing updated NODE_2404_length_990_cov_11.733026_pilon to pilon.fasta [pilon] Writing NODE_2405_length_990_cov_8.246260:1-990 changes to pilon.changes [pilon] Writing updated NODE_2405_length_990_cov_8.246260_pilon to pilon.fasta [pilon] Writing NODE_2406_length_989_cov_44.900922:1-989 changes to pilon.changes [pilon] Writing updated NODE_2406_length_989_cov_44.900922_pilon to pilon.fasta [pilon] Writing NODE_2407_length_989_cov_30.171659:1-989 changes to pilon.changes [pilon] Writing updated NODE_2407_length_989_cov_30.171659_pilon to pilon.fasta [pilon] Writing NODE_2408_length_989_cov_16.831797:1-989 changes to pilon.changes [pilon] Writing updated NODE_2408_length_989_cov_16.831797_pilon to pilon.fasta [pilon] Writing NODE_2409_length_989_cov_14.527650:1-989 changes to pilon.changes [pilon] Writing updated NODE_2409_length_989_cov_14.527650_pilon to pilon.fasta [pilon] Writing NODE_2410_length_989_cov_3.872120:1-989 changes to pilon.changes [pilon] Writing updated NODE_2410_length_989_cov_3.872120_pilon to pilon.fasta [pilon] Writing NODE_2411_length_989_cov_1.860599:1-989 changes to pilon.changes [pilon] Writing updated NODE_2411_length_989_cov_1.860599_pilon to pilon.fasta [pilon] Writing NODE_2412_length_988_cov_7.959631:1-988 changes to pilon.changes [pilon] Writing updated NODE_2412_length_988_cov_7.959631_pilon to pilon.fasta [pilon] Writing NODE_2413_length_988_cov_6.369089:1-988 changes to pilon.changes [pilon] Writing updated NODE_2413_length_988_cov_6.369089_pilon to pilon.fasta [pilon] Writing NODE_2414_length_988_cov_5.904268:1-988 changes to pilon.changes [pilon] Writing updated NODE_2414_length_988_cov_5.904268_pilon to pilon.fasta [pilon] Writing NODE_2415_length_988_cov_4.953864:1-988 changes to pilon.changes [pilon] Writing updated NODE_2415_length_988_cov_4.953864_pilon to pilon.fasta [pilon] Writing NODE_2416_length_987_cov_31.394919:1-987 changes to pilon.changes [pilon] Writing updated NODE_2416_length_987_cov_31.394919_pilon to pilon.fasta [pilon] Writing NODE_2417_length_987_cov_21.240185:1-987 changes to pilon.changes [pilon] Writing updated NODE_2417_length_987_cov_21.240185_pilon to pilon.fasta [pilon] Writing NODE_2418_length_987_cov_4.408776:1-987 changes to pilon.changes [pilon] Writing updated NODE_2418_length_987_cov_4.408776_pilon to pilon.fasta [pilon] Writing NODE_2419_length_986_cov_29.767630:1-986 changes to pilon.changes [pilon] Writing updated NODE_2419_length_986_cov_29.767630_pilon to pilon.fasta [pilon] Writing NODE_2420_length_986_cov_26.252023:1-986 changes to pilon.changes [pilon] Writing updated NODE_2420_length_986_cov_26.252023_pilon to pilon.fasta [pilon] Writing NODE_2421_length_986_cov_13.639306:1-986 changes to pilon.changes [pilon] Writing updated NODE_2421_length_986_cov_13.639306_pilon to pilon.fasta [pilon] Writing NODE_2422_length_985_cov_28.987269:1-985 changes to pilon.changes [pilon] Writing updated NODE_2422_length_985_cov_28.987269_pilon to pilon.fasta [pilon] Writing NODE_2423_length_985_cov_13.575231:1-985 changes to pilon.changes [pilon] Writing updated NODE_2423_length_985_cov_13.575231_pilon to pilon.fasta [pilon] Writing NODE_2424_length_985_cov_1.496528:1-985 changes to pilon.changes [pilon] Writing updated NODE_2424_length_985_cov_1.496528_pilon to pilon.fasta [pilon] Writing NODE_2425_length_984_cov_55.885284:1-984 changes to pilon.changes [pilon] Writing updated NODE_2425_length_984_cov_55.885284_pilon to pilon.fasta [pilon] Writing NODE_2426_length_984_cov_12.750869:1-984 changes to pilon.changes [pilon] Writing updated NODE_2426_length_984_cov_12.750869_pilon to pilon.fasta [pilon] Writing NODE_2427_length_984_cov_1.899189:1-984 changes to pilon.changes [pilon] Writing updated NODE_2427_length_984_cov_1.899189_pilon to pilon.fasta [pilon] Writing NODE_2428_length_983_cov_26.457077:1-983 changes to pilon.changes [pilon] Writing updated NODE_2428_length_983_cov_26.457077_pilon to pilon.fasta [pilon] Writing NODE_2429_length_983_cov_24.779582:1-983 changes to pilon.changes [pilon] Writing updated NODE_2429_length_983_cov_24.779582_pilon to pilon.fasta [pilon] Writing NODE_2430_length_982_cov_25.997677:1-982 changes to pilon.changes [pilon] Writing updated NODE_2430_length_982_cov_25.997677_pilon to pilon.fasta [pilon] Writing NODE_2431_length_982_cov_19.409988:1-982 changes to pilon.changes [pilon] Writing updated NODE_2431_length_982_cov_19.409988_pilon to pilon.fasta [pilon] Writing NODE_2432_length_982_cov_19.354239:1-982 changes to pilon.changes [pilon] Writing updated NODE_2432_length_982_cov_19.354239_pilon to pilon.fasta [pilon] Writing NODE_2433_length_981_cov_32.040698:1-981 changes to pilon.changes [pilon] Writing updated NODE_2433_length_981_cov_32.040698_pilon to pilon.fasta [pilon] Writing NODE_2434_length_981_cov_26.140698:1-981 changes to pilon.changes [pilon] Writing updated NODE_2434_length_981_cov_26.140698_pilon to pilon.fasta [pilon] Writing NODE_2435_length_981_cov_3.418605:1-981 changes to pilon.changes [pilon] Writing updated NODE_2435_length_981_cov_3.418605_pilon to pilon.fasta [pilon] Writing NODE_2436_length_981_cov_2.020930:1-981 changes to pilon.changes [pilon] Writing updated NODE_2436_length_981_cov_2.020930_pilon to pilon.fasta [pilon] Writing NODE_2437_length_980_cov_31.827707:1-980 changes to pilon.changes [pilon] Writing updated NODE_2437_length_980_cov_31.827707_pilon to pilon.fasta [pilon] Writing NODE_2438_length_980_cov_24.426077:1-980 changes to pilon.changes [pilon] Writing updated NODE_2438_length_980_cov_24.426077_pilon to pilon.fasta [pilon] Writing NODE_2439_length_980_cov_20.937136:1-980 changes to pilon.changes [pilon] Writing updated NODE_2439_length_980_cov_20.937136_pilon to pilon.fasta [pilon] Writing NODE_2440_length_980_cov_16.388824:1-980 changes to pilon.changes [pilon] Writing updated NODE_2440_length_980_cov_16.388824_pilon to pilon.fasta [pilon] Writing NODE_2441_length_980_cov_4.513388:1-980 changes to pilon.changes [pilon] Writing updated NODE_2441_length_980_cov_4.513388_pilon to pilon.fasta [pilon] Writing NODE_2442_length_980_cov_2.635623:1-980 changes to pilon.changes [pilon] Writing updated NODE_2442_length_980_cov_2.635623_pilon to pilon.fasta [pilon] Writing NODE_2443_length_979_cov_44.684149:1-979 changes to pilon.changes [pilon] Writing updated NODE_2443_length_979_cov_44.684149_pilon to pilon.fasta [pilon] Writing NODE_2444_length_979_cov_33.139860:1-979 changes to pilon.changes [pilon] Writing updated NODE_2444_length_979_cov_33.139860_pilon to pilon.fasta [pilon] Writing NODE_2445_length_979_cov_26.397436:1-979 changes to pilon.changes [pilon] Writing updated NODE_2445_length_979_cov_26.397436_pilon to pilon.fasta [pilon] Writing NODE_2446_length_979_cov_20.820513:1-979 changes to pilon.changes [pilon] Writing updated NODE_2446_length_979_cov_20.820513_pilon to pilon.fasta [pilon] Writing NODE_2447_length_978_cov_18.485414:1-978 changes to pilon.changes [pilon] Writing updated NODE_2447_length_978_cov_18.485414_pilon to pilon.fasta [pilon] Writing NODE_2448_length_978_cov_5.331389:1-978 changes to pilon.changes [pilon] Writing updated NODE_2448_length_978_cov_5.331389_pilon to pilon.fasta [pilon] Writing NODE_2449_length_978_cov_3.905484:1-978 changes to pilon.changes [pilon] Writing updated NODE_2449_length_978_cov_3.905484_pilon to pilon.fasta [pilon] Writing NODE_2450_length_977_cov_21.468458:1-977 changes to pilon.changes [pilon] Writing updated NODE_2450_length_977_cov_21.468458_pilon to pilon.fasta [pilon] Writing NODE_2451_length_977_cov_20.885514:1-977 changes to pilon.changes [pilon] Writing updated NODE_2451_length_977_cov_20.885514_pilon to pilon.fasta [pilon] Writing NODE_2452_length_977_cov_2.434579:1-977 changes to pilon.changes [pilon] Writing updated NODE_2452_length_977_cov_2.434579_pilon to pilon.fasta [pilon] Writing NODE_2453_length_977_cov_1.475467:1-977 changes to pilon.changes [pilon] Writing updated NODE_2453_length_977_cov_1.475467_pilon to pilon.fasta [pilon] Writing NODE_2454_length_977_cov_1.172897:1-977 changes to pilon.changes [pilon] Writing updated NODE_2454_length_977_cov_1.172897_pilon to pilon.fasta [pilon] Writing NODE_2455_length_976_cov_37.336842:1-976 changes to pilon.changes [pilon] Writing updated NODE_2455_length_976_cov_37.336842_pilon to pilon.fasta [pilon] Writing NODE_2456_length_976_cov_30.299415:1-976 changes to pilon.changes [pilon] Writing updated NODE_2456_length_976_cov_30.299415_pilon to pilon.fasta [pilon] Writing NODE_2457_length_976_cov_22.178947:1-976 changes to pilon.changes [pilon] Writing updated NODE_2457_length_976_cov_22.178947_pilon to pilon.fasta [pilon] Writing NODE_2458_length_976_cov_2.989474:1-976 changes to pilon.changes [pilon] Writing updated NODE_2458_length_976_cov_2.989474_pilon to pilon.fasta [pilon] Writing NODE_2459_length_975_cov_34.668618:1-975 changes to pilon.changes [pilon] Writing updated NODE_2459_length_975_cov_34.668618_pilon to pilon.fasta [pilon] Writing NODE_2460_length_975_cov_22.543326:1-975 changes to pilon.changes [pilon] Writing updated NODE_2460_length_975_cov_22.543326_pilon to pilon.fasta [pilon] Writing NODE_2461_length_975_cov_20.487119:1-975 changes to pilon.changes [pilon] Writing updated NODE_2461_length_975_cov_20.487119_pilon to pilon.fasta [pilon] Writing NODE_2462_length_975_cov_12.964871:1-975 changes to pilon.changes [pilon] Writing updated NODE_2462_length_975_cov_12.964871_pilon to pilon.fasta [pilon] Writing NODE_2463_length_975_cov_2.651054:1-975 changes to pilon.changes [pilon] Writing updated NODE_2463_length_975_cov_2.651054_pilon to pilon.fasta [pilon] Writing NODE_2464_length_975_cov_1.679157:1-975 changes to pilon.changes [pilon] Writing updated NODE_2464_length_975_cov_1.679157_pilon to pilon.fasta [pilon] Writing NODE_2465_length_974_cov_38.135991:1-974 changes to pilon.changes [pilon] Writing updated NODE_2465_length_974_cov_38.135991_pilon to pilon.fasta [pilon] Writing NODE_2466_length_974_cov_27.873388:1-974 changes to pilon.changes [pilon] Writing updated NODE_2466_length_974_cov_27.873388_pilon to pilon.fasta [pilon] Writing NODE_2467_length_974_cov_16.218054:1-974 changes to pilon.changes [pilon] Writing updated NODE_2467_length_974_cov_16.218054_pilon to pilon.fasta [pilon] Writing NODE_2468_length_974_cov_1.376319:1-974 changes to pilon.changes [pilon] Writing updated NODE_2468_length_974_cov_1.376319_pilon to pilon.fasta [pilon] Writing NODE_2469_length_973_cov_23.778169:1-973 changes to pilon.changes [pilon] Writing updated NODE_2469_length_973_cov_23.778169_pilon to pilon.fasta [pilon] Writing NODE_2470_length_973_cov_1.791080:1-973 changes to pilon.changes [pilon] Writing updated NODE_2470_length_973_cov_1.791080_pilon to pilon.fasta [pilon] Writing NODE_2471_length_972_cov_21.971798:1-972 changes to pilon.changes [pilon] Writing updated NODE_2471_length_972_cov_21.971798_pilon to pilon.fasta [pilon] Writing NODE_2472_length_972_cov_17.981199:1-972 changes to pilon.changes [pilon] Writing updated NODE_2472_length_972_cov_17.981199_pilon to pilon.fasta [pilon] Writing NODE_2473_length_972_cov_4.616921:1-972 changes to pilon.changes [pilon] Writing updated NODE_2473_length_972_cov_4.616921_pilon to pilon.fasta [pilon] Writing NODE_2474_length_971_cov_20.278824:1-971 changes to pilon.changes [pilon] Writing updated NODE_2474_length_971_cov_20.278824_pilon to pilon.fasta [pilon] Writing NODE_2475_length_971_cov_13.691765:1-971 changes to pilon.changes [pilon] Writing updated NODE_2475_length_971_cov_13.691765_pilon to pilon.fasta [pilon] Writing NODE_2476_length_971_cov_7.885882:1-971 changes to pilon.changes [pilon] Writing updated NODE_2476_length_971_cov_7.885882_pilon to pilon.fasta [pilon] Writing NODE_2477_length_971_cov_3.847059:1-971 changes to pilon.changes [pilon] Writing updated NODE_2477_length_971_cov_3.847059_pilon to pilon.fasta [pilon] Writing NODE_2478_length_971_cov_1.942353:1-971 changes to pilon.changes [pilon] Writing updated NODE_2478_length_971_cov_1.942353_pilon to pilon.fasta [pilon] Writing NODE_2479_length_970_cov_48.272085:1-970 changes to pilon.changes [pilon] Writing updated NODE_2479_length_970_cov_48.272085_pilon to pilon.fasta [pilon] Writing NODE_2480_length_970_cov_35.513545:1-970 changes to pilon.changes [pilon] Writing updated NODE_2480_length_970_cov_35.513545_pilon to pilon.fasta [pilon] Writing NODE_2481_length_970_cov_29.521790:1-970 changes to pilon.changes [pilon] Writing updated NODE_2481_length_970_cov_29.521790_pilon to pilon.fasta [pilon] Writing NODE_2482_length_970_cov_29.190813:1-970 changes to pilon.changes [pilon] Writing updated NODE_2482_length_970_cov_29.190813_pilon to pilon.fasta [pilon] Writing NODE_2483_length_970_cov_26.712603:1-970 changes to pilon.changes [pilon] Writing updated NODE_2483_length_970_cov_26.712603_pilon to pilon.fasta [pilon] Writing NODE_2484_length_970_cov_25.608952:1-970 changes to pilon.changes [pilon] Writing updated NODE_2484_length_970_cov_25.608952_pilon to pilon.fasta [pilon] Writing NODE_2485_length_970_cov_22.193168:1-970 changes to pilon.changes [pilon] Writing updated NODE_2485_length_970_cov_22.193168_pilon to pilon.fasta [pilon] Writing NODE_2486_length_970_cov_15.428740:1-970 changes to pilon.changes [pilon] Writing updated NODE_2486_length_970_cov_15.428740_pilon to pilon.fasta [pilon] Writing NODE_2487_length_970_cov_11.440518:1-970 changes to pilon.changes [pilon] Writing updated NODE_2487_length_970_cov_11.440518_pilon to pilon.fasta [pilon] Writing NODE_2488_length_970_cov_5.571260:1-970 changes to pilon.changes [pilon] Writing updated NODE_2488_length_970_cov_5.571260_pilon to pilon.fasta [pilon] Writing NODE_2489_length_970_cov_1.579505:1-970 changes to pilon.changes [pilon] Writing updated NODE_2489_length_970_cov_1.579505_pilon to pilon.fasta [pilon] Writing NODE_2490_length_969_cov_9.987028:1-969 changes to pilon.changes [pilon] Writing updated NODE_2490_length_969_cov_9.987028_pilon to pilon.fasta [pilon] Writing NODE_2491_length_969_cov_9.252358:1-969 changes to pilon.changes [pilon] Writing updated NODE_2491_length_969_cov_9.252358_pilon to pilon.fasta [pilon] Writing NODE_2492_length_969_cov_2.949292:1-969 changes to pilon.changes [pilon] Writing updated NODE_2492_length_969_cov_2.949292_pilon to pilon.fasta [pilon] Writing NODE_2493_length_969_cov_2.054245:1-969 changes to pilon.changes [pilon] Writing updated NODE_2493_length_969_cov_2.054245_pilon to pilon.fasta [pilon] Writing NODE_2494_length_969_cov_1.620283:1-969 changes to pilon.changes [pilon] Writing updated NODE_2494_length_969_cov_1.620283_pilon to pilon.fasta [pilon] Writing NODE_2495_length_968_cov_30.857143:1-968 changes to pilon.changes [pilon] Writing updated NODE_2495_length_968_cov_30.857143_pilon to pilon.fasta [pilon] Writing NODE_2496_length_968_cov_25.356553:1-968 changes to pilon.changes [pilon] Writing updated NODE_2496_length_968_cov_25.356553_pilon to pilon.fasta [pilon] Writing NODE_2497_length_968_cov_16.362456:1-968 changes to pilon.changes [pilon] Writing updated NODE_2497_length_968_cov_16.362456_pilon to pilon.fasta [pilon] Writing NODE_2498_length_968_cov_15.927981:1-968 changes to pilon.changes [pilon] Writing updated NODE_2498_length_968_cov_15.927981_pilon to pilon.fasta [pilon] Writing NODE_2499_length_968_cov_6.598583:1-968 changes to pilon.changes [pilon] Writing updated NODE_2499_length_968_cov_6.598583_pilon to pilon.fasta [pilon] Writing NODE_2500_length_968_cov_1.378985:1-968 changes to pilon.changes [pilon] Writing updated NODE_2500_length_968_cov_1.378985_pilon to pilon.fasta [pilon] Writing NODE_2501_length_967_cov_17.845154:1-967 changes to pilon.changes [pilon] Writing updated NODE_2501_length_967_cov_17.845154_pilon to pilon.fasta [pilon] Writing NODE_2502_length_967_cov_10.983452:1-967 changes to pilon.changes [pilon] Writing updated NODE_2502_length_967_cov_10.983452_pilon to pilon.fasta [pilon] Writing NODE_2503_length_967_cov_6.871158:1-967 changes to pilon.changes [pilon] Writing updated NODE_2503_length_967_cov_6.871158_pilon to pilon.fasta [pilon] Writing NODE_2504_length_966_cov_37.859172:1-966 changes to pilon.changes [pilon] Writing updated NODE_2504_length_966_cov_37.859172_pilon to pilon.fasta [pilon] Writing NODE_2505_length_966_cov_31.447337:1-966 changes to pilon.changes [pilon] Writing updated NODE_2505_length_966_cov_31.447337_pilon to pilon.fasta [pilon] Writing NODE_2506_length_966_cov_21.675740:1-966 changes to pilon.changes [pilon] Writing updated NODE_2506_length_966_cov_21.675740_pilon to pilon.fasta [pilon] Writing NODE_2507_length_966_cov_21.648521:1-966 changes to pilon.changes [pilon] Writing updated NODE_2507_length_966_cov_21.648521_pilon to pilon.fasta [pilon] Writing NODE_2508_length_966_cov_13.840237:1-966 changes to pilon.changes [pilon] Writing updated NODE_2508_length_966_cov_13.840237_pilon to pilon.fasta [pilon] Writing NODE_2509_length_965_cov_36.558057:1-965 changes to pilon.changes [pilon] Writing updated NODE_2509_length_965_cov_36.558057_pilon to pilon.fasta [pilon] Writing NODE_2510_length_965_cov_20.966825:1-965 changes to pilon.changes [pilon] Writing updated NODE_2510_length_965_cov_20.966825_pilon to pilon.fasta [pilon] Writing NODE_2511_length_965_cov_11.170616:1-965 changes to pilon.changes [pilon] Writing updated NODE_2511_length_965_cov_11.170616_pilon to pilon.fasta [pilon] Writing NODE_2512_length_964_cov_35.365362:1-964 changes to pilon.changes [pilon] Writing updated NODE_2512_length_964_cov_35.365362_pilon to pilon.fasta [pilon] Writing NODE_2513_length_964_cov_23.989324:1-964 changes to pilon.changes [pilon] Writing updated NODE_2513_length_964_cov_23.989324_pilon to pilon.fasta [pilon] Writing NODE_2514_length_964_cov_23.881376:1-964 changes to pilon.changes [pilon] Writing updated NODE_2514_length_964_cov_23.881376_pilon to pilon.fasta [pilon] Writing NODE_2515_length_964_cov_18.593120:1-964 changes to pilon.changes [pilon] Writing updated NODE_2515_length_964_cov_18.593120_pilon to pilon.fasta [pilon] Writing NODE_2516_length_964_cov_13.804270:1-964 changes to pilon.changes [pilon] Writing updated NODE_2516_length_964_cov_13.804270_pilon to pilon.fasta [pilon] Writing NODE_2517_length_964_cov_4.255042:1-964 changes to pilon.changes [pilon] Writing updated NODE_2517_length_964_cov_4.255042_pilon to pilon.fasta [pilon] Writing NODE_2518_length_964_cov_2.660735:1-964 changes to pilon.changes [pilon] Writing updated NODE_2518_length_964_cov_2.660735_pilon to pilon.fasta [pilon] Writing NODE_2519_length_963_cov_23.705463:1-963 changes to pilon.changes [pilon] Writing updated NODE_2519_length_963_cov_23.705463_pilon to pilon.fasta [pilon] Writing NODE_2520_length_963_cov_14.900238:1-963 changes to pilon.changes [pilon] Writing updated NODE_2520_length_963_cov_14.900238_pilon to pilon.fasta [pilon] Writing NODE_2521_length_963_cov_1.597387:1-963 changes to pilon.changes [pilon] Writing updated NODE_2521_length_963_cov_1.597387_pilon to pilon.fasta [pilon] Writing NODE_2522_length_963_cov_0.944181:1-963 changes to pilon.changes [pilon] Writing updated NODE_2522_length_963_cov_0.944181_pilon to pilon.fasta [pilon] Writing NODE_2523_length_962_cov_49.019025:1-962 changes to pilon.changes [pilon] Writing updated NODE_2523_length_962_cov_49.019025_pilon to pilon.fasta [pilon] Writing NODE_2524_length_962_cov_24.753864:1-962 changes to pilon.changes [pilon] Writing updated NODE_2524_length_962_cov_24.753864_pilon to pilon.fasta [pilon] Writing NODE_2525_length_962_cov_19.806183:1-962 changes to pilon.changes [pilon] Writing updated NODE_2525_length_962_cov_19.806183_pilon to pilon.fasta [pilon] Writing NODE_2526_length_962_cov_3.670630:1-962 changes to pilon.changes [pilon] Writing updated NODE_2526_length_962_cov_3.670630_pilon to pilon.fasta [pilon] Writing NODE_2527_length_962_cov_0.784780:1-962 changes to pilon.changes [pilon] Writing updated NODE_2527_length_962_cov_0.784780_pilon to pilon.fasta [pilon] Writing NODE_2528_length_961_cov_42.258333:1-961 changes to pilon.changes [pilon] Writing updated NODE_2528_length_961_cov_42.258333_pilon to pilon.fasta [pilon] Writing NODE_2529_length_961_cov_2.866667:1-961 changes to pilon.changes [pilon] Writing updated NODE_2529_length_961_cov_2.866667_pilon to pilon.fasta [pilon] Writing NODE_2530_length_961_cov_1.964286:1-961 changes to pilon.changes [pilon] Writing updated NODE_2530_length_961_cov_1.964286_pilon to pilon.fasta [pilon] Writing NODE_2531_length_960_cov_37.525626:1-960 changes to pilon.changes [pilon] Writing updated NODE_2531_length_960_cov_37.525626_pilon to pilon.fasta [pilon] Writing NODE_2532_length_960_cov_37.377831:1-960 changes to pilon.changes [pilon] Writing updated NODE_2532_length_960_cov_37.377831_pilon to pilon.fasta [pilon] Writing NODE_2533_length_960_cov_25.856973:1-960 changes to pilon.changes [pilon] Writing updated NODE_2533_length_960_cov_25.856973_pilon to pilon.fasta [pilon] Writing NODE_2534_length_960_cov_20.637664:1-960 changes to pilon.changes [pilon] Writing updated NODE_2534_length_960_cov_20.637664_pilon to pilon.fasta [pilon] Writing NODE_2535_length_960_cov_1.356377:1-960 changes to pilon.changes [pilon] Writing updated NODE_2535_length_960_cov_1.356377_pilon to pilon.fasta [pilon] Writing NODE_2536_length_960_cov_1.175209:1-960 changes to pilon.changes [pilon] Writing updated NODE_2536_length_960_cov_1.175209_pilon to pilon.fasta [pilon] Writing NODE_2537_length_959_cov_37.300716:1-959 changes to pilon.changes [pilon] Writing updated NODE_2537_length_959_cov_37.300716_pilon to pilon.fasta [pilon] Writing NODE_2538_length_959_cov_29.176611:1-959 changes to pilon.changes [pilon] Writing updated NODE_2538_length_959_cov_29.176611_pilon to pilon.fasta [pilon] Writing NODE_2539_length_959_cov_1.120525:1-959 changes to pilon.changes [pilon] Writing updated NODE_2539_length_959_cov_1.120525_pilon to pilon.fasta [pilon] Writing NODE_2540_length_958_cov_50.602151:1-958 changes to pilon.changes [pilon] Writing updated NODE_2540_length_958_cov_50.602151_pilon to pilon.fasta [pilon] Writing NODE_2541_length_958_cov_49.393070:1-958 changes to pilon.changes [pilon] Writing updated NODE_2541_length_958_cov_49.393070_pilon to pilon.fasta [pilon] Writing NODE_2542_length_958_cov_31.181601:1-958 changes to pilon.changes [pilon] Writing updated NODE_2542_length_958_cov_31.181601_pilon to pilon.fasta [pilon] Writing NODE_2543_length_957_cov_25.800239:1-957 changes to pilon.changes [pilon] Writing updated NODE_2543_length_957_cov_25.800239_pilon to pilon.fasta [pilon] Writing NODE_2544_length_957_cov_21.169856:1-957 changes to pilon.changes [pilon] Writing updated NODE_2544_length_957_cov_21.169856_pilon to pilon.fasta [pilon] Writing NODE_2545_length_957_cov_20.666268:1-957 changes to pilon.changes [pilon] Writing updated NODE_2545_length_957_cov_20.666268_pilon to pilon.fasta [pilon] Writing NODE_2546_length_957_cov_18.159091:1-957 changes to pilon.changes [pilon] Writing updated NODE_2546_length_957_cov_18.159091_pilon to pilon.fasta [pilon] Writing NODE_2547_length_957_cov_15.840909:1-957 changes to pilon.changes [pilon] Writing updated NODE_2547_length_957_cov_15.840909_pilon to pilon.fasta [pilon] Writing NODE_2548_length_957_cov_3.338517:1-957 changes to pilon.changes [pilon] Writing updated NODE_2548_length_957_cov_3.338517_pilon to pilon.fasta [pilon] Writing NODE_2549_length_957_cov_2.470096:1-957 changes to pilon.changes [pilon] Writing updated NODE_2549_length_957_cov_2.470096_pilon to pilon.fasta [pilon] Writing NODE_2550_length_957_cov_1.851675:1-957 changes to pilon.changes [pilon] Writing updated NODE_2550_length_957_cov_1.851675_pilon to pilon.fasta [pilon] Writing NODE_2551_length_956_cov_26.014371:1-956 changes to pilon.changes [pilon] Writing updated NODE_2551_length_956_cov_26.014371_pilon to pilon.fasta [pilon] Writing NODE_2552_length_956_cov_23.087425:1-956 changes to pilon.changes [pilon] Writing updated NODE_2552_length_956_cov_23.087425_pilon to pilon.fasta [pilon] Writing NODE_2553_length_956_cov_19.920958:1-956 changes to pilon.changes [pilon] Writing updated NODE_2553_length_956_cov_19.920958_pilon to pilon.fasta [pilon] Writing NODE_2554_length_956_cov_9.071856:1-956 changes to pilon.changes [pilon] Writing updated NODE_2554_length_956_cov_9.071856_pilon to pilon.fasta [pilon] Writing NODE_2555_length_956_cov_2.834731:1-956 changes to pilon.changes [pilon] Writing updated NODE_2555_length_956_cov_2.834731_pilon to pilon.fasta [pilon] Writing NODE_2556_length_955_cov_46.398082:1-955 changes to pilon.changes [pilon] Writing updated NODE_2556_length_955_cov_46.398082_pilon to pilon.fasta [pilon] Writing NODE_2557_length_955_cov_21.032374:1-955 changes to pilon.changes [pilon] Writing updated NODE_2557_length_955_cov_21.032374_pilon to pilon.fasta [pilon] Writing NODE_2558_length_955_cov_19.990408:1-955 changes to pilon.changes [pilon] Writing updated NODE_2558_length_955_cov_19.990408_pilon to pilon.fasta [pilon] Writing NODE_2559_length_955_cov_15.835731:1-955 changes to pilon.changes [pilon] Writing updated NODE_2559_length_955_cov_15.835731_pilon to pilon.fasta [pilon] Writing NODE_2560_length_955_cov_8.971223:1-955 changes to pilon.changes [pilon] Writing updated NODE_2560_length_955_cov_8.971223_pilon to pilon.fasta [pilon] Writing NODE_2561_length_955_cov_1.884892:1-955 changes to pilon.changes [pilon] Writing updated NODE_2561_length_955_cov_1.884892_pilon to pilon.fasta [pilon] Writing NODE_2562_length_954_cov_30.400960:1-954 changes to pilon.changes [pilon] Writing updated NODE_2562_length_954_cov_30.400960_pilon to pilon.fasta [pilon] Writing NODE_2563_length_954_cov_22.950780:1-954 changes to pilon.changes [pilon] Writing updated NODE_2563_length_954_cov_22.950780_pilon to pilon.fasta [pilon] Writing NODE_2564_length_954_cov_1.686675:1-954 changes to pilon.changes [pilon] Writing updated NODE_2564_length_954_cov_1.686675_pilon to pilon.fasta [pilon] Writing NODE_2565_length_954_cov_0.960384:1-954 changes to pilon.changes [pilon] Writing updated NODE_2565_length_954_cov_0.960384_pilon to pilon.fasta [pilon] Writing NODE_2566_length_953_cov_27.836538:1-953 changes to pilon.changes [pilon] Writing updated NODE_2566_length_953_cov_27.836538_pilon to pilon.fasta [pilon] Writing NODE_2567_length_953_cov_22.381010:1-953 changes to pilon.changes [pilon] Writing updated NODE_2567_length_953_cov_22.381010_pilon to pilon.fasta [pilon] Writing NODE_2568_length_953_cov_19.090144:1-953 changes to pilon.changes [pilon] Writing updated NODE_2568_length_953_cov_19.090144_pilon to pilon.fasta [pilon] Writing NODE_2569_length_953_cov_18.675481:1-953 changes to pilon.changes [pilon] Writing updated NODE_2569_length_953_cov_18.675481_pilon to pilon.fasta [pilon] Writing NODE_2570_length_953_cov_15.575721:1-953 changes to pilon.changes [pilon] Writing updated NODE_2570_length_953_cov_15.575721_pilon to pilon.fasta [pilon] Writing NODE_2571_length_953_cov_4.426683:1-953 changes to pilon.changes [pilon] Writing updated NODE_2571_length_953_cov_4.426683_pilon to pilon.fasta [pilon] Writing NODE_2572_length_953_cov_1.037260:1-953 changes to pilon.changes [pilon] Writing updated NODE_2572_length_953_cov_1.037260_pilon to pilon.fasta [pilon] Writing NODE_2573_length_952_cov_23.587244:1-952 changes to pilon.changes [pilon] Writing updated NODE_2573_length_952_cov_23.587244_pilon to pilon.fasta [pilon] Writing NODE_2574_length_952_cov_2.697954:1-952 changes to pilon.changes [pilon] Writing updated NODE_2574_length_952_cov_2.697954_pilon to pilon.fasta [pilon] Writing NODE_2575_length_951_cov_18.179518:1-951 changes to pilon.changes [pilon] Writing updated NODE_2575_length_951_cov_18.179518_pilon to pilon.fasta [pilon] Writing NODE_2576_length_951_cov_3.409639:1-951 changes to pilon.changes [pilon] Writing updated NODE_2576_length_951_cov_3.409639_pilon to pilon.fasta [pilon] Writing NODE_2577_length_951_cov_1.806024:1-951 changes to pilon.changes [pilon] Writing updated NODE_2577_length_951_cov_1.806024_pilon to pilon.fasta [pilon] Writing NODE_2578_length_951_cov_1.662651:1-951 changes to pilon.changes [pilon] Writing updated NODE_2578_length_951_cov_1.662651_pilon to pilon.fasta [pilon] Writing NODE_2579_length_950_cov_44.369119:1-950 changes to pilon.changes [pilon] Writing updated NODE_2579_length_950_cov_44.369119_pilon to pilon.fasta [pilon] Writing NODE_2580_length_950_cov_36.921592:1-950 changes to pilon.changes [pilon] Writing updated NODE_2580_length_950_cov_36.921592_pilon to pilon.fasta [pilon] Writing NODE_2581_length_950_cov_21.376357:1-950 changes to pilon.changes [pilon] Writing updated NODE_2581_length_950_cov_21.376357_pilon to pilon.fasta [pilon] Writing NODE_2582_length_949_cov_29.664251:1-949 changes to pilon.changes [pilon] Writing updated NODE_2582_length_949_cov_29.664251_pilon to pilon.fasta [pilon] Writing NODE_2583_length_949_cov_21.433575:1-949 changes to pilon.changes [pilon] Writing updated NODE_2583_length_949_cov_21.433575_pilon to pilon.fasta [pilon] Writing NODE_2584_length_948_cov_25.969770:1-948 changes to pilon.changes [pilon] Writing updated NODE_2584_length_948_cov_25.969770_pilon to pilon.fasta [pilon] Writing NODE_2585_length_948_cov_23.394196:1-948 changes to pilon.changes [pilon] Writing updated NODE_2585_length_948_cov_23.394196_pilon to pilon.fasta [pilon] Writing NODE_2586_length_948_cov_19.818622:1-948 changes to pilon.changes [pilon] Writing updated NODE_2586_length_948_cov_19.818622_pilon to pilon.fasta [pilon] Writing NODE_2587_length_948_cov_15.207981:1-948 changes to pilon.changes [pilon] Writing updated NODE_2587_length_948_cov_15.207981_pilon to pilon.fasta [pilon] Writing NODE_2588_length_948_cov_2.210399:1-948 changes to pilon.changes [pilon] Writing updated NODE_2588_length_948_cov_2.210399_pilon to pilon.fasta [pilon] Writing NODE_2589_length_947_cov_16.992736:1-947 changes to pilon.changes [pilon] Writing updated NODE_2589_length_947_cov_16.992736_pilon to pilon.fasta [pilon] Writing NODE_2590_length_947_cov_13.588378:1-947 changes to pilon.changes [pilon] Writing updated NODE_2590_length_947_cov_13.588378_pilon to pilon.fasta [pilon] Writing NODE_2591_length_947_cov_12.368039:1-947 changes to pilon.changes [pilon] Writing updated NODE_2591_length_947_cov_12.368039_pilon to pilon.fasta [pilon] Writing NODE_2592_length_946_cov_48.728485:1-946 changes to pilon.changes [pilon] Writing updated NODE_2592_length_946_cov_48.728485_pilon to pilon.fasta [pilon] Writing NODE_2593_length_946_cov_39.975758:1-946 changes to pilon.changes [pilon] Writing updated NODE_2593_length_946_cov_39.975758_pilon to pilon.fasta [pilon] Writing NODE_2594_length_946_cov_23.517576:1-946 changes to pilon.changes [pilon] Writing updated NODE_2594_length_946_cov_23.517576_pilon to pilon.fasta [pilon] Writing NODE_2595_length_946_cov_20.019394:1-946 changes to pilon.changes [pilon] Writing updated NODE_2595_length_946_cov_20.019394_pilon to pilon.fasta [pilon] Writing NODE_2596_length_946_cov_16.175758:1-946 changes to pilon.changes [pilon] Writing updated NODE_2596_length_946_cov_16.175758_pilon to pilon.fasta [pilon] Writing NODE_2597_length_946_cov_1.116364:1-946 changes to pilon.changes [pilon] Writing updated NODE_2597_length_946_cov_1.116364_pilon to pilon.fasta [pilon] Writing NODE_2598_length_945_cov_28.018204:1-945 changes to pilon.changes [pilon] Writing updated NODE_2598_length_945_cov_28.018204_pilon to pilon.fasta [pilon] Writing NODE_2599_length_945_cov_22.424757:1-945 changes to pilon.changes [pilon] Writing updated NODE_2599_length_945_cov_22.424757_pilon to pilon.fasta [pilon] Writing NODE_2600_length_945_cov_19.516990:1-945 changes to pilon.changes [pilon] Writing updated NODE_2600_length_945_cov_19.516990_pilon to pilon.fasta [pilon] Writing NODE_2601_length_945_cov_12.825243:1-945 changes to pilon.changes [pilon] Writing updated NODE_2601_length_945_cov_12.825243_pilon to pilon.fasta [pilon] Writing NODE_2602_length_945_cov_12.797330:1-945 changes to pilon.changes [pilon] Writing updated NODE_2602_length_945_cov_12.797330_pilon to pilon.fasta [pilon] Writing NODE_2603_length_945_cov_3.575243:1-945 changes to pilon.changes [pilon] Writing updated NODE_2603_length_945_cov_3.575243_pilon to pilon.fasta [pilon] Writing NODE_2604_length_945_cov_2.627427:1-945 changes to pilon.changes [pilon] Writing updated NODE_2604_length_945_cov_2.627427_pilon to pilon.fasta [pilon] Writing NODE_2605_length_945_cov_2.205097:1-945 changes to pilon.changes [pilon] Writing updated NODE_2605_length_945_cov_2.205097_pilon to pilon.fasta [pilon] Writing NODE_2606_length_945_cov_1.405340:1-945 changes to pilon.changes [pilon] Writing updated NODE_2606_length_945_cov_1.405340_pilon to pilon.fasta [pilon] Writing NODE_2607_length_945_cov_0.871359:1-945 changes to pilon.changes [pilon] Writing updated NODE_2607_length_945_cov_0.871359_pilon to pilon.fasta [pilon] Writing NODE_2608_length_944_cov_20.780073:1-944 changes to pilon.changes [pilon] Writing updated NODE_2608_length_944_cov_20.780073_pilon to pilon.fasta [pilon] Writing NODE_2609_length_944_cov_1.284326:1-944 changes to pilon.changes [pilon] Writing updated NODE_2609_length_944_cov_1.284326_pilon to pilon.fasta [pilon] Writing NODE_2610_length_943_cov_16.316302:1-943 changes to pilon.changes [pilon] Writing updated NODE_2610_length_943_cov_16.316302_pilon to pilon.fasta [pilon] Writing NODE_2611_length_943_cov_14.469586:1-943 changes to pilon.changes [pilon] Writing updated NODE_2611_length_943_cov_14.469586_pilon to pilon.fasta [pilon] Writing NODE_2612_length_943_cov_4.444039:1-943 changes to pilon.changes [pilon] Writing updated NODE_2612_length_943_cov_4.444039_pilon to pilon.fasta [pilon] Writing NODE_2613_length_943_cov_2.159367:1-943 changes to pilon.changes [pilon] Writing updated NODE_2613_length_943_cov_2.159367_pilon to pilon.fasta [pilon] Writing NODE_2614_length_943_cov_1.350365:1-943 changes to pilon.changes [pilon] Writing updated NODE_2614_length_943_cov_1.350365_pilon to pilon.fasta [pilon] Writing NODE_2615_length_943_cov_1.259124:1-943 changes to pilon.changes [pilon] Writing updated NODE_2615_length_943_cov_1.259124_pilon to pilon.fasta [pilon] Writing NODE_2616_length_942_cov_35.225335:1-942 changes to pilon.changes [pilon] Writing updated NODE_2616_length_942_cov_35.225335_pilon to pilon.fasta [pilon] Writing NODE_2617_length_942_cov_34.830694:1-942 changes to pilon.changes [pilon] Writing updated NODE_2617_length_942_cov_34.830694_pilon to pilon.fasta [pilon] Writing NODE_2618_length_942_cov_23.842875:1-942 changes to pilon.changes [pilon] Writing updated NODE_2618_length_942_cov_23.842875_pilon to pilon.fasta [pilon] Writing NODE_2619_length_942_cov_22.434836:1-942 changes to pilon.changes [pilon] Writing updated NODE_2619_length_942_cov_22.434836_pilon to pilon.fasta [pilon] Writing NODE_2620_length_942_cov_21.841657:1-942 changes to pilon.changes [pilon] Writing updated NODE_2620_length_942_cov_21.841657_pilon to pilon.fasta [pilon] Writing NODE_2621_length_942_cov_20.585871:1-942 changes to pilon.changes [pilon] Writing updated NODE_2621_length_942_cov_20.585871_pilon to pilon.fasta [pilon] Writing NODE_2622_length_942_cov_15.354446:1-942 changes to pilon.changes [pilon] Writing updated NODE_2622_length_942_cov_15.354446_pilon to pilon.fasta [pilon] Writing NODE_2623_length_942_cov_15.018270:1-942 changes to pilon.changes [pilon] Writing updated NODE_2623_length_942_cov_15.018270_pilon to pilon.fasta [pilon] Writing NODE_2624_length_942_cov_14.153471:1-942 changes to pilon.changes [pilon] Writing updated NODE_2624_length_942_cov_14.153471_pilon to pilon.fasta [pilon] Writing NODE_2625_length_942_cov_2.506699:1-942 changes to pilon.changes [pilon] Writing updated NODE_2625_length_942_cov_2.506699_pilon to pilon.fasta [pilon] Writing NODE_2626_length_942_cov_1.444580:1-942 changes to pilon.changes [pilon] Writing updated NODE_2626_length_942_cov_1.444580_pilon to pilon.fasta [pilon] Writing NODE_2627_length_942_cov_1.395859:1-942 changes to pilon.changes [pilon] Writing updated NODE_2627_length_942_cov_1.395859_pilon to pilon.fasta [pilon] Writing NODE_2628_length_942_cov_1.058465:1-942 changes to pilon.changes [pilon] Writing updated NODE_2628_length_942_cov_1.058465_pilon to pilon.fasta [pilon] Writing NODE_2629_length_941_cov_18.665854:1-941 changes to pilon.changes [pilon] Writing updated NODE_2629_length_941_cov_18.665854_pilon to pilon.fasta [pilon] Writing NODE_2630_length_941_cov_15.224390:1-941 changes to pilon.changes [pilon] Writing updated NODE_2630_length_941_cov_15.224390_pilon to pilon.fasta [pilon] Writing NODE_2631_length_941_cov_6.084146:1-941 changes to pilon.changes [pilon] Writing updated NODE_2631_length_941_cov_6.084146_pilon to pilon.fasta [pilon] Writing NODE_2632_length_941_cov_2.851220:1-941 changes to pilon.changes [pilon] Writing updated NODE_2632_length_941_cov_2.851220_pilon to pilon.fasta [pilon] Writing NODE_2633_length_941_cov_2.763415:1-941 changes to pilon.changes [pilon] Writing updated NODE_2633_length_941_cov_2.763415_pilon to pilon.fasta [pilon] Writing NODE_2634_length_941_cov_2.752439:1-941 changes to pilon.changes [pilon] Writing updated NODE_2634_length_941_cov_2.752439_pilon to pilon.fasta [pilon] Writing NODE_2635_length_941_cov_2.158537:1-941 changes to pilon.changes [pilon] Writing updated NODE_2635_length_941_cov_2.158537_pilon to pilon.fasta [pilon] Writing NODE_2636_length_940_cov_32.609280:1-940 changes to pilon.changes [pilon] Writing updated NODE_2636_length_940_cov_32.609280_pilon to pilon.fasta [pilon] Writing NODE_2637_length_940_cov_16.791209:1-940 changes to pilon.changes [pilon] Writing updated NODE_2637_length_940_cov_16.791209_pilon to pilon.fasta [pilon] Writing NODE_2638_length_940_cov_3.844933:1-940 changes to pilon.changes [pilon] Writing updated NODE_2638_length_940_cov_3.844933_pilon to pilon.fasta [pilon] Writing NODE_2639_length_940_cov_3.100122:1-940 changes to pilon.changes [pilon] Writing updated NODE_2639_length_940_cov_3.100122_pilon to pilon.fasta [pilon] Writing NODE_2640_length_940_cov_1.860806:1-940 changes to pilon.changes [pilon] Writing updated NODE_2640_length_940_cov_1.860806_pilon to pilon.fasta [pilon] Writing NODE_2641_length_939_cov_45.072127:1-939 changes to pilon.changes [pilon] Writing updated NODE_2641_length_939_cov_45.072127_pilon to pilon.fasta [pilon] Writing NODE_2642_length_939_cov_29.940098:1-939 changes to pilon.changes [pilon] Writing updated NODE_2642_length_939_cov_29.940098_pilon to pilon.fasta [pilon] Writing NODE_2643_length_939_cov_21.943765:1-939 changes to pilon.changes [pilon] Writing updated NODE_2643_length_939_cov_21.943765_pilon to pilon.fasta [pilon] Writing NODE_2644_length_939_cov_20.477995:1-939 changes to pilon.changes [pilon] Writing updated NODE_2644_length_939_cov_20.477995_pilon to pilon.fasta [pilon] Writing NODE_2645_length_939_cov_4.500000:1-939 changes to pilon.changes [pilon] Writing updated NODE_2645_length_939_cov_4.500000_pilon to pilon.fasta [pilon] Writing NODE_2646_length_939_cov_2.371638:1-939 changes to pilon.changes [pilon] Writing updated NODE_2646_length_939_cov_2.371638_pilon to pilon.fasta [pilon] Writing NODE_2647_length_938_cov_29.831089:1-938 changes to pilon.changes [pilon] Writing updated NODE_2647_length_938_cov_29.831089_pilon to pilon.fasta [pilon] Writing NODE_2648_length_938_cov_7.493268:1-938 changes to pilon.changes [pilon] Writing updated NODE_2648_length_938_cov_7.493268_pilon to pilon.fasta [pilon] Writing NODE_2649_length_938_cov_1.686659:1-938 changes to pilon.changes [pilon] Writing updated NODE_2649_length_938_cov_1.686659_pilon to pilon.fasta [pilon] Writing NODE_2650_length_938_cov_1.385557:1-938 changes to pilon.changes [pilon] Writing updated NODE_2650_length_938_cov_1.385557_pilon to pilon.fasta [pilon] Writing NODE_2651_length_937_cov_20.721814:1-937 changes to pilon.changes [pilon] Writing updated NODE_2651_length_937_cov_20.721814_pilon to pilon.fasta [pilon] Writing NODE_2652_length_937_cov_6.049020:1-937 changes to pilon.changes [pilon] Writing updated NODE_2652_length_937_cov_6.049020_pilon to pilon.fasta [pilon] Writing NODE_2653_length_937_cov_2.185049:1-937 changes to pilon.changes [pilon] Writing updated NODE_2653_length_937_cov_2.185049_pilon to pilon.fasta [pilon] Writing NODE_2654_length_937_cov_0.421569:1-937 changes to pilon.changes [pilon] Writing updated NODE_2654_length_937_cov_0.421569_pilon to pilon.fasta [pilon] Writing NODE_2655_length_936_cov_22.000000:1-936 changes to pilon.changes [pilon] Writing updated NODE_2655_length_936_cov_22.000000_pilon to pilon.fasta [pilon] Writing NODE_2656_length_936_cov_20.511656:1-936 changes to pilon.changes [pilon] Writing updated NODE_2656_length_936_cov_20.511656_pilon to pilon.fasta [pilon] Writing NODE_2657_length_936_cov_12.874847:1-936 changes to pilon.changes [pilon] Writing updated NODE_2657_length_936_cov_12.874847_pilon to pilon.fasta [pilon] Writing NODE_2658_length_936_cov_11.461350:1-936 changes to pilon.changes [pilon] Writing updated NODE_2658_length_936_cov_11.461350_pilon to pilon.fasta [pilon] Writing NODE_2659_length_936_cov_11.354601:1-936 changes to pilon.changes [pilon] Writing updated NODE_2659_length_936_cov_11.354601_pilon to pilon.fasta [pilon] Writing NODE_2660_length_936_cov_2.607362:1-936 changes to pilon.changes [pilon] Writing updated NODE_2660_length_936_cov_2.607362_pilon to pilon.fasta [pilon] Writing NODE_2661_length_935_cov_15.205160:1-935 changes to pilon.changes [pilon] Writing updated NODE_2661_length_935_cov_15.205160_pilon to pilon.fasta [pilon] Writing NODE_2662_length_935_cov_11.914005:1-935 changes to pilon.changes [pilon] Writing updated NODE_2662_length_935_cov_11.914005_pilon to pilon.fasta [pilon] Writing NODE_2663_length_935_cov_2.651106:1-935 changes to pilon.changes [pilon] Writing updated NODE_2663_length_935_cov_2.651106_pilon to pilon.fasta [pilon] Writing NODE_2664_length_935_cov_1.651106:1-935 changes to pilon.changes [pilon] Writing updated NODE_2664_length_935_cov_1.651106_pilon to pilon.fasta [pilon] Writing NODE_2665_length_935_cov_0.918919:1-935 changes to pilon.changes [pilon] Writing updated NODE_2665_length_935_cov_0.918919_pilon to pilon.fasta [pilon] Writing NODE_2666_length_934_cov_49.790898:1-934 changes to pilon.changes [pilon] Writing updated NODE_2666_length_934_cov_49.790898_pilon to pilon.fasta [pilon] Writing NODE_2667_length_934_cov_44.777368:1-934 changes to pilon.changes [pilon] Writing updated NODE_2667_length_934_cov_44.777368_pilon to pilon.fasta [pilon] Writing NODE_2668_length_934_cov_43.937269:1-934 changes to pilon.changes [pilon] Writing updated NODE_2668_length_934_cov_43.937269_pilon to pilon.fasta [pilon] Writing NODE_2669_length_934_cov_14.665437:1-934 changes to pilon.changes [pilon] Writing updated NODE_2669_length_934_cov_14.665437_pilon to pilon.fasta [pilon] Writing NODE_2670_length_934_cov_8.569496:1-934 changes to pilon.changes [pilon] Writing updated NODE_2670_length_934_cov_8.569496_pilon to pilon.fasta [pilon] Writing NODE_2671_length_933_cov_24.399015:1-933 changes to pilon.changes [pilon] Writing updated NODE_2671_length_933_cov_24.399015_pilon to pilon.fasta [pilon] Writing NODE_2672_length_933_cov_18.863300:1-933 changes to pilon.changes [pilon] Writing updated NODE_2672_length_933_cov_18.863300_pilon to pilon.fasta [pilon] Writing NODE_2673_length_933_cov_14.128079:1-933 changes to pilon.changes [pilon] Writing updated NODE_2673_length_933_cov_14.128079_pilon to pilon.fasta [pilon] Writing NODE_2674_length_933_cov_7.225369:1-933 changes to pilon.changes [pilon] Writing updated NODE_2674_length_933_cov_7.225369_pilon to pilon.fasta [pilon] Writing NODE_2675_length_933_cov_2.184729:1-933 changes to pilon.changes [pilon] Writing updated NODE_2675_length_933_cov_2.184729_pilon to pilon.fasta [pilon] Writing NODE_2676_length_933_cov_1.253695:1-933 changes to pilon.changes [pilon] Writing updated NODE_2676_length_933_cov_1.253695_pilon to pilon.fasta [pilon] Writing NODE_2677_length_932_cov_40.869297:1-932 changes to pilon.changes [pilon] Writing updated NODE_2677_length_932_cov_40.869297_pilon to pilon.fasta [pilon] Writing NODE_2678_length_932_cov_27.403206:1-932 changes to pilon.changes [pilon] Writing updated NODE_2678_length_932_cov_27.403206_pilon to pilon.fasta [pilon] Writing NODE_2679_length_932_cov_23.286067:1-932 changes to pilon.changes [pilon] Writing updated NODE_2679_length_932_cov_23.286067_pilon to pilon.fasta [pilon] Writing NODE_2680_length_932_cov_16.358816:1-932 changes to pilon.changes [pilon] Writing updated NODE_2680_length_932_cov_16.358816_pilon to pilon.fasta [pilon] Writing NODE_2681_length_932_cov_15.416769:1-932 changes to pilon.changes [pilon] Writing updated NODE_2681_length_932_cov_15.416769_pilon to pilon.fasta [pilon] Writing NODE_2682_length_932_cov_14.554871:1-932 changes to pilon.changes [pilon] Writing updated NODE_2682_length_932_cov_14.554871_pilon to pilon.fasta [pilon] Writing NODE_2683_length_932_cov_12.314427:1-932 changes to pilon.changes [pilon] Writing updated NODE_2683_length_932_cov_12.314427_pilon to pilon.fasta [pilon] Writing NODE_2684_length_932_cov_11.199753:1-932 changes to pilon.changes [pilon] Writing updated NODE_2684_length_932_cov_11.199753_pilon to pilon.fasta [pilon] Writing NODE_2685_length_932_cov_1.419236:1-932 changes to pilon.changes [pilon] Writing updated NODE_2685_length_932_cov_1.419236_pilon to pilon.fasta [pilon] Writing NODE_2686_length_931_cov_33.150617:1-931 changes to pilon.changes [pilon] Writing updated NODE_2686_length_931_cov_33.150617_pilon to pilon.fasta [pilon] Writing NODE_2687_length_931_cov_29.929630:1-931 changes to pilon.changes [pilon] Writing updated NODE_2687_length_931_cov_29.929630_pilon to pilon.fasta [pilon] Writing NODE_2688_length_931_cov_17.017284:1-931 changes to pilon.changes [pilon] Writing updated NODE_2688_length_931_cov_17.017284_pilon to pilon.fasta [pilon] Writing NODE_2689_length_931_cov_12.072840:1-931 changes to pilon.changes [pilon] Writing updated NODE_2689_length_931_cov_12.072840_pilon to pilon.fasta [pilon] Writing NODE_2690_length_931_cov_11.362963:1-931 changes to pilon.changes [pilon] Writing updated NODE_2690_length_931_cov_11.362963_pilon to pilon.fasta [pilon] Writing NODE_2691_length_931_cov_1.280247:1-931 changes to pilon.changes [pilon] Writing updated NODE_2691_length_931_cov_1.280247_pilon to pilon.fasta [pilon] Writing NODE_2692_length_930_cov_25.144623:1-930 changes to pilon.changes [pilon] Writing updated NODE_2692_length_930_cov_25.144623_pilon to pilon.fasta [pilon] Writing NODE_2693_length_930_cov_16.870210:1-930 changes to pilon.changes [pilon] Writing updated NODE_2693_length_930_cov_16.870210_pilon to pilon.fasta [pilon] Writing NODE_2694_length_930_cov_15.686032:1-930 changes to pilon.changes [pilon] Writing updated NODE_2694_length_930_cov_15.686032_pilon to pilon.fasta [pilon] Writing NODE_2695_length_930_cov_13.943140:1-930 changes to pilon.changes [pilon] Writing updated NODE_2695_length_930_cov_13.943140_pilon to pilon.fasta [pilon] Writing NODE_2696_length_930_cov_11.249691:1-930 changes to pilon.changes [pilon] Writing updated NODE_2696_length_930_cov_11.249691_pilon to pilon.fasta [pilon] Writing NODE_2697_length_929_cov_7.919554:1-929 changes to pilon.changes [pilon] Writing updated NODE_2697_length_929_cov_7.919554_pilon to pilon.fasta [pilon] Writing NODE_2698_length_929_cov_3.533416:1-929 changes to pilon.changes [pilon] Writing updated NODE_2698_length_929_cov_3.533416_pilon to pilon.fasta [pilon] Writing NODE_2699_length_929_cov_3.516089:1-929 changes to pilon.changes [pilon] Writing updated NODE_2699_length_929_cov_3.516089_pilon to pilon.fasta [pilon] Writing NODE_2700_length_929_cov_2.698020:1-929 changes to pilon.changes [pilon] Writing updated NODE_2700_length_929_cov_2.698020_pilon to pilon.fasta [pilon] Writing NODE_2701_length_929_cov_1.855198:1-929 changes to pilon.changes [pilon] Writing updated NODE_2701_length_929_cov_1.855198_pilon to pilon.fasta [pilon] Writing NODE_2702_length_929_cov_1.750000:1-929 changes to pilon.changes [pilon] Writing updated NODE_2702_length_929_cov_1.750000_pilon to pilon.fasta [pilon] Writing NODE_2703_length_929_cov_1.650990:1-929 changes to pilon.changes [pilon] Writing updated NODE_2703_length_929_cov_1.650990_pilon to pilon.fasta [pilon] Writing NODE_2704_length_929_cov_1.230198:1-929 changes to pilon.changes [pilon] Writing updated NODE_2704_length_929_cov_1.230198_pilon to pilon.fasta [pilon] Writing NODE_2705_length_928_cov_25.029740:1-928 changes to pilon.changes [pilon] Writing updated NODE_2705_length_928_cov_25.029740_pilon to pilon.fasta [pilon] Writing NODE_2706_length_928_cov_17.976456:1-928 changes to pilon.changes [pilon] Writing updated NODE_2706_length_928_cov_17.976456_pilon to pilon.fasta [pilon] Writing NODE_2707_length_928_cov_6.758364:1-928 changes to pilon.changes [pilon] Writing updated NODE_2707_length_928_cov_6.758364_pilon to pilon.fasta [pilon] Writing NODE_2708_length_927_cov_39.299007:1-927 changes to pilon.changes [pilon] Writing updated NODE_2708_length_927_cov_39.299007_pilon to pilon.fasta [pilon] Writing NODE_2709_length_927_cov_20.130273:1-927 changes to pilon.changes [pilon] Writing updated NODE_2709_length_927_cov_20.130273_pilon to pilon.fasta [pilon] Writing NODE_2710_length_927_cov_16.673697:1-927 changes to pilon.changes [pilon] Writing updated NODE_2710_length_927_cov_16.673697_pilon to pilon.fasta [pilon] Writing NODE_2711_length_926_cov_46.787578:1-926 changes to pilon.changes [pilon] Writing updated NODE_2711_length_926_cov_46.787578_pilon to pilon.fasta [pilon] Writing NODE_2712_length_926_cov_18.315528:1-926 changes to pilon.changes [pilon] Writing updated NODE_2712_length_926_cov_18.315528_pilon to pilon.fasta [pilon] Writing NODE_2713_length_926_cov_15.422360:1-926 changes to pilon.changes [pilon] Writing updated NODE_2713_length_926_cov_15.422360_pilon to pilon.fasta [pilon] Writing NODE_2714_length_926_cov_14.647205:1-926 changes to pilon.changes [pilon] Writing updated NODE_2714_length_926_cov_14.647205_pilon to pilon.fasta [pilon] Writing NODE_2715_length_926_cov_14.354037:1-926 changes to pilon.changes [pilon] Writing updated NODE_2715_length_926_cov_14.354037_pilon to pilon.fasta [pilon] Writing NODE_2716_length_926_cov_7.763975:1-926 changes to pilon.changes [pilon] Writing updated NODE_2716_length_926_cov_7.763975_pilon to pilon.fasta [pilon] Writing NODE_2717_length_926_cov_1.911801:1-926 changes to pilon.changes [pilon] Writing updated NODE_2717_length_926_cov_1.911801_pilon to pilon.fasta [pilon] Writing NODE_2718_length_925_cov_55.865672:1-925 changes to pilon.changes [pilon] Writing updated NODE_2718_length_925_cov_55.865672_pilon to pilon.fasta [pilon] Writing NODE_2719_length_925_cov_26.427861:1-925 changes to pilon.changes [pilon] Writing updated NODE_2719_length_925_cov_26.427861_pilon to pilon.fasta [pilon] Writing NODE_2720_length_925_cov_18.310945:1-925 changes to pilon.changes [pilon] Writing updated NODE_2720_length_925_cov_18.310945_pilon to pilon.fasta [pilon] Writing NODE_2721_length_925_cov_16.778607:1-925 changes to pilon.changes [pilon] Writing updated NODE_2721_length_925_cov_16.778607_pilon to pilon.fasta [pilon] Writing NODE_2722_length_925_cov_1.863184:1-925 changes to pilon.changes [pilon] Writing updated NODE_2722_length_925_cov_1.863184_pilon to pilon.fasta [pilon] Writing NODE_2723_length_924_cov_15.580324:1-924 changes to pilon.changes [pilon] Writing updated NODE_2723_length_924_cov_15.580324_pilon to pilon.fasta [pilon] Writing NODE_2724_length_924_cov_1.087173:1-924 changes to pilon.changes [pilon] Writing updated NODE_2724_length_924_cov_1.087173_pilon to pilon.fasta [pilon] Writing NODE_2725_length_923_cov_39.036160:1-923 changes to pilon.changes [pilon] Writing updated NODE_2725_length_923_cov_39.036160_pilon to pilon.fasta [pilon] Writing NODE_2726_length_923_cov_3.980050:1-923 changes to pilon.changes [pilon] Writing updated NODE_2726_length_923_cov_3.980050_pilon to pilon.fasta [pilon] Writing NODE_2727_length_923_cov_1.771820:1-923 changes to pilon.changes [pilon] Writing updated NODE_2727_length_923_cov_1.771820_pilon to pilon.fasta [pilon] Writing NODE_2728_length_923_cov_1.451372:1-923 changes to pilon.changes [pilon] Writing updated NODE_2728_length_923_cov_1.451372_pilon to pilon.fasta [pilon] Writing NODE_2729_length_923_cov_1.058603:1-923 changes to pilon.changes [pilon] Writing updated NODE_2729_length_923_cov_1.058603_pilon to pilon.fasta [pilon] Writing NODE_2730_length_922_cov_35.081149:1-922 changes to pilon.changes [pilon] Writing updated NODE_2730_length_922_cov_35.081149_pilon to pilon.fasta [pilon] Writing NODE_2731_length_922_cov_25.421973:1-922 changes to pilon.changes [pilon] Writing updated NODE_2731_length_922_cov_25.421973_pilon to pilon.fasta [pilon] Writing NODE_2732_length_922_cov_11.935081:1-922 changes to pilon.changes [pilon] Writing updated NODE_2732_length_922_cov_11.935081_pilon to pilon.fasta [pilon] Writing NODE_2733_length_921_cov_28.496250:1-921 changes to pilon.changes [pilon] Writing updated NODE_2733_length_921_cov_28.496250_pilon to pilon.fasta [pilon] Writing NODE_2734_length_921_cov_21.970000:1-921 changes to pilon.changes [pilon] Writing updated NODE_2734_length_921_cov_21.970000_pilon to pilon.fasta [pilon] Writing NODE_2735_length_921_cov_18.198750:1-921 changes to pilon.changes [pilon] Writing updated NODE_2735_length_921_cov_18.198750_pilon to pilon.fasta [pilon] Writing NODE_2736_length_921_cov_4.771250:1-921 changes to pilon.changes [pilon] Writing updated NODE_2736_length_921_cov_4.771250_pilon to pilon.fasta [pilon] Writing NODE_2737_length_921_cov_2.435000:1-921 changes to pilon.changes [pilon] Writing updated NODE_2737_length_921_cov_2.435000_pilon to pilon.fasta [pilon] Writing NODE_2738_length_921_cov_2.220000:1-921 changes to pilon.changes [pilon] Writing updated NODE_2738_length_921_cov_2.220000_pilon to pilon.fasta [pilon] Writing NODE_2739_length_920_cov_19.078849:1-920 changes to pilon.changes [pilon] Writing updated NODE_2739_length_920_cov_19.078849_pilon to pilon.fasta [pilon] Writing NODE_2740_length_920_cov_10.478098:1-920 changes to pilon.changes [pilon] Writing updated NODE_2740_length_920_cov_10.478098_pilon to pilon.fasta [pilon] Writing NODE_2741_length_920_cov_9.430538:1-920 changes to pilon.changes [pilon] Writing updated NODE_2741_length_920_cov_9.430538_pilon to pilon.fasta [pilon] Writing NODE_2742_length_920_cov_0.866083:1-920 changes to pilon.changes [pilon] Writing updated NODE_2742_length_920_cov_0.866083_pilon to pilon.fasta [pilon] Writing NODE_2743_length_919_cov_30.716792:1-919 changes to pilon.changes [pilon] Writing updated NODE_2743_length_919_cov_30.716792_pilon to pilon.fasta [pilon] Writing NODE_2744_length_919_cov_29.209273:1-919 changes to pilon.changes [pilon] Writing updated NODE_2744_length_919_cov_29.209273_pilon to pilon.fasta [pilon] Writing NODE_2745_length_919_cov_20.397243:1-919 changes to pilon.changes [pilon] Writing updated NODE_2745_length_919_cov_20.397243_pilon to pilon.fasta [pilon] Writing NODE_2746_length_919_cov_1.720551:1-919 changes to pilon.changes [pilon] Writing updated NODE_2746_length_919_cov_1.720551_pilon to pilon.fasta [pilon] Writing NODE_2747_length_918_cov_57.164366:1-918 changes to pilon.changes [pilon] Writing updated NODE_2747_length_918_cov_57.164366_pilon to pilon.fasta [pilon] Writing NODE_2748_length_918_cov_1.998745:1-918 changes to pilon.changes [pilon] Writing updated NODE_2748_length_918_cov_1.998745_pilon to pilon.fasta [pilon] Writing NODE_2749_length_918_cov_1.647428:1-918 changes to pilon.changes [pilon] Writing updated NODE_2749_length_918_cov_1.647428_pilon to pilon.fasta [pilon] Writing NODE_2750_length_917_cov_52.645729:1-917 changes to pilon.changes [pilon] Writing updated NODE_2750_length_917_cov_52.645729_pilon to pilon.fasta [pilon] Writing NODE_2751_length_917_cov_33.216080:1-917 changes to pilon.changes [pilon] Writing updated NODE_2751_length_917_cov_33.216080_pilon to pilon.fasta [pilon] Writing NODE_2752_length_917_cov_22.118090:1-917 changes to pilon.changes [pilon] Writing updated NODE_2752_length_917_cov_22.118090_pilon to pilon.fasta [pilon] Writing NODE_2753_length_917_cov_21.959799:1-917 changes to pilon.changes [pilon] Writing updated NODE_2753_length_917_cov_21.959799_pilon to pilon.fasta [pilon] Writing NODE_2754_length_917_cov_19.520101:1-917 changes to pilon.changes [pilon] Writing updated NODE_2754_length_917_cov_19.520101_pilon to pilon.fasta [pilon] Writing NODE_2755_length_917_cov_19.400754:1-917 changes to pilon.changes [pilon] Writing updated NODE_2755_length_917_cov_19.400754_pilon to pilon.fasta [pilon] Writing NODE_2756_length_917_cov_18.027638:1-917 changes to pilon.changes [pilon] Writing updated NODE_2756_length_917_cov_18.027638_pilon to pilon.fasta [pilon] Writing NODE_2757_length_917_cov_16.783920:1-917 changes to pilon.changes [pilon] Writing updated NODE_2757_length_917_cov_16.783920_pilon to pilon.fasta [pilon] Writing NODE_2758_length_917_cov_10.150754:1-917 changes to pilon.changes [pilon] Writing updated NODE_2758_length_917_cov_10.150754_pilon to pilon.fasta [pilon] Writing NODE_2759_length_917_cov_6.889447:1-917 changes to pilon.changes [pilon] Writing updated NODE_2759_length_917_cov_6.889447_pilon to pilon.fasta [pilon] Writing NODE_2760_length_917_cov_4.011307:1-917 changes to pilon.changes [pilon] Writing updated NODE_2760_length_917_cov_4.011307_pilon to pilon.fasta [pilon] Writing NODE_2761_length_917_cov_2.219849:1-917 changes to pilon.changes [pilon] Writing updated NODE_2761_length_917_cov_2.219849_pilon to pilon.fasta [pilon] Writing NODE_2762_length_916_cov_26.271698:1-916 changes to pilon.changes [pilon] Writing updated NODE_2762_length_916_cov_26.271698_pilon to pilon.fasta [pilon] Writing NODE_2763_length_915_cov_21.423174:1-915 changes to pilon.changes [pilon] Writing updated NODE_2763_length_915_cov_21.423174_pilon to pilon.fasta [pilon] Writing NODE_2764_length_915_cov_12.686398:1-915 changes to pilon.changes [pilon] Writing updated NODE_2764_length_915_cov_12.686398_pilon to pilon.fasta [pilon] Writing NODE_2765_length_915_cov_1.829975:1-915 changes to pilon.changes [pilon] Writing updated NODE_2765_length_915_cov_1.829975_pilon to pilon.fasta [pilon] Writing NODE_2766_length_915_cov_1.433249:1-915 changes to pilon.changes [pilon] Writing updated NODE_2766_length_915_cov_1.433249_pilon to pilon.fasta [pilon] Writing NODE_2767_length_914_cov_29.268600:1-914 changes to pilon.changes [pilon] Writing updated NODE_2767_length_914_cov_29.268600_pilon to pilon.fasta [pilon] Writing NODE_2768_length_914_cov_18.820933:1-914 changes to pilon.changes [pilon] Writing updated NODE_2768_length_914_cov_18.820933_pilon to pilon.fasta [pilon] Writing NODE_2769_length_914_cov_17.276166:1-914 changes to pilon.changes [pilon] Writing updated NODE_2769_length_914_cov_17.276166_pilon to pilon.fasta [pilon] Writing NODE_2770_length_914_cov_10.356873:1-914 changes to pilon.changes [pilon] Writing updated NODE_2770_length_914_cov_10.356873_pilon to pilon.fasta [pilon] Writing NODE_2771_length_914_cov_3.633039:1-914 changes to pilon.changes [pilon] Writing updated NODE_2771_length_914_cov_3.633039_pilon to pilon.fasta [pilon] Writing NODE_2772_length_914_cov_3.593947:1-914 changes to pilon.changes [pilon] Writing updated NODE_2772_length_914_cov_3.593947_pilon to pilon.fasta [pilon] Writing NODE_2773_length_914_cov_2.094578:1-914 changes to pilon.changes [pilon] Writing updated NODE_2773_length_914_cov_2.094578_pilon to pilon.fasta [pilon] Writing NODE_2774_length_914_cov_1.813367:1-914 changes to pilon.changes [pilon] Writing updated NODE_2774_length_914_cov_1.813367_pilon to pilon.fasta [pilon] Writing NODE_2775_length_913_cov_45.637626:1-913 changes to pilon.changes [pilon] Writing updated NODE_2775_length_913_cov_45.637626_pilon to pilon.fasta [pilon] Writing NODE_2776_length_913_cov_29.978535:1-913 changes to pilon.changes [pilon] Writing updated NODE_2776_length_913_cov_29.978535_pilon to pilon.fasta [pilon] Writing NODE_2777_length_913_cov_16.645202:1-913 changes to pilon.changes [pilon] Writing updated NODE_2777_length_913_cov_16.645202_pilon to pilon.fasta [pilon] Writing NODE_2778_length_913_cov_6.779040:1-913 changes to pilon.changes [pilon] Writing updated NODE_2778_length_913_cov_6.779040_pilon to pilon.fasta [pilon] Writing NODE_2779_length_913_cov_1.325758:1-913 changes to pilon.changes [pilon] Writing updated NODE_2779_length_913_cov_1.325758_pilon to pilon.fasta [pilon] Writing NODE_2780_length_913_cov_0.895202:1-913 changes to pilon.changes [pilon] Writing updated NODE_2780_length_913_cov_0.895202_pilon to pilon.fasta [pilon] Writing NODE_2781_length_912_cov_30.920354:1-912 changes to pilon.changes [pilon] Writing updated NODE_2781_length_912_cov_30.920354_pilon to pilon.fasta [pilon] Writing NODE_2782_length_912_cov_1.534766:1-912 changes to pilon.changes [pilon] Writing updated NODE_2782_length_912_cov_1.534766_pilon to pilon.fasta [pilon] Writing NODE_2783_length_912_cov_1.058154:1-912 changes to pilon.changes [pilon] Writing updated NODE_2783_length_912_cov_1.058154_pilon to pilon.fasta [pilon] Writing NODE_2784_length_911_cov_29.126582:1-911 changes to pilon.changes [pilon] Writing updated NODE_2784_length_911_cov_29.126582_pilon to pilon.fasta [pilon] Writing NODE_2785_length_911_cov_16.639241:1-911 changes to pilon.changes [pilon] Writing updated NODE_2785_length_911_cov_16.639241_pilon to pilon.fasta [pilon] Writing NODE_2786_length_911_cov_11.645570:1-911 changes to pilon.changes [pilon] Writing updated NODE_2786_length_911_cov_11.645570_pilon to pilon.fasta [pilon] Writing NODE_2787_length_911_cov_2.618987:1-911 changes to pilon.changes [pilon] Writing updated NODE_2787_length_911_cov_2.618987_pilon to pilon.fasta [pilon] Writing NODE_2788_length_911_cov_2.517722:1-911 changes to pilon.changes [pilon] Writing updated NODE_2788_length_911_cov_2.517722_pilon to pilon.fasta [pilon] Writing NODE_2789_length_911_cov_1.521519:1-911 changes to pilon.changes [pilon] Writing updated NODE_2789_length_911_cov_1.521519_pilon to pilon.fasta [pilon] Writing NODE_2790_length_911_cov_1.005063:1-911 changes to pilon.changes [pilon] Writing updated NODE_2790_length_911_cov_1.005063_pilon to pilon.fasta [pilon] Writing NODE_2791_length_911_cov_0.605063:1-911 changes to pilon.changes [pilon] Writing updated NODE_2791_length_911_cov_0.605063_pilon to pilon.fasta [pilon] Writing NODE_2792_length_910_cov_31.510773:1-910 changes to pilon.changes [pilon] Writing updated NODE_2792_length_910_cov_31.510773_pilon to pilon.fasta [pilon] Writing NODE_2793_length_910_cov_15.006337:1-910 changes to pilon.changes [pilon] Writing updated NODE_2793_length_910_cov_15.006337_pilon to pilon.fasta [pilon] Writing NODE_2794_length_910_cov_1.690748:1-910 changes to pilon.changes [pilon] Writing updated NODE_2794_length_910_cov_1.690748_pilon to pilon.fasta [pilon] Writing NODE_2795_length_910_cov_1.285171:1-910 changes to pilon.changes [pilon] Writing updated NODE_2795_length_910_cov_1.285171_pilon to pilon.fasta [pilon] Writing NODE_2796_length_909_cov_31.510152:1-909 changes to pilon.changes [pilon] Writing updated NODE_2796_length_909_cov_31.510152_pilon to pilon.fasta [pilon] Writing NODE_2797_length_909_cov_25.276650:1-909 changes to pilon.changes [pilon] Writing updated NODE_2797_length_909_cov_25.276650_pilon to pilon.fasta [pilon] Writing NODE_2798_length_909_cov_17.642132:1-909 changes to pilon.changes [pilon] Writing updated NODE_2798_length_909_cov_17.642132_pilon to pilon.fasta [pilon] Writing NODE_2799_length_909_cov_16.119289:1-909 changes to pilon.changes [pilon] Writing updated NODE_2799_length_909_cov_16.119289_pilon to pilon.fasta [pilon] Writing NODE_2800_length_909_cov_12.747462:1-909 changes to pilon.changes [pilon] Writing updated NODE_2800_length_909_cov_12.747462_pilon to pilon.fasta [pilon] Writing NODE_2801_length_909_cov_2.497462:1-909 changes to pilon.changes [pilon] Writing updated NODE_2801_length_909_cov_2.497462_pilon to pilon.fasta [pilon] Writing NODE_2802_length_909_cov_1.201777:1-909 changes to pilon.changes [pilon] Writing updated NODE_2802_length_909_cov_1.201777_pilon to pilon.fasta [pilon] Writing NODE_2803_length_909_cov_0.884518:1-909 changes to pilon.changes [pilon] Writing updated NODE_2803_length_909_cov_0.884518_pilon to pilon.fasta [pilon] Writing NODE_2804_length_908_cov_30.645489:1-908 changes to pilon.changes [pilon] Writing updated NODE_2804_length_908_cov_30.645489_pilon to pilon.fasta [pilon] Writing NODE_2805_length_908_cov_28.241423:1-908 changes to pilon.changes [pilon] Writing updated NODE_2805_length_908_cov_28.241423_pilon to pilon.fasta [pilon] Writing NODE_2806_length_908_cov_25.789072:1-908 changes to pilon.changes [pilon] Writing updated NODE_2806_length_908_cov_25.789072_pilon to pilon.fasta [pilon] Writing NODE_2807_length_908_cov_16.087675:1-908 changes to pilon.changes [pilon] Writing updated NODE_2807_length_908_cov_16.087675_pilon to pilon.fasta [pilon] Writing NODE_2808_length_908_cov_12.790343:1-908 changes to pilon.changes [pilon] Writing updated NODE_2808_length_908_cov_12.790343_pilon to pilon.fasta [pilon] Writing NODE_2809_length_908_cov_5.956798:1-908 changes to pilon.changes [pilon] Writing updated NODE_2809_length_908_cov_5.956798_pilon to pilon.fasta [pilon] Writing NODE_2810_length_907_cov_45.173028:1-907 changes to pilon.changes [pilon] Writing updated NODE_2810_length_907_cov_45.173028_pilon to pilon.fasta [pilon] Writing NODE_2811_length_907_cov_20.314249:1-907 changes to pilon.changes [pilon] Writing updated NODE_2811_length_907_cov_20.314249_pilon to pilon.fasta [pilon] Writing NODE_2812_length_907_cov_13.902036:1-907 changes to pilon.changes [pilon] Writing updated NODE_2812_length_907_cov_13.902036_pilon to pilon.fasta [pilon] Writing NODE_2813_length_907_cov_2.685751:1-907 changes to pilon.changes [pilon] Writing updated NODE_2813_length_907_cov_2.685751_pilon to pilon.fasta [pilon] Writing NODE_2814_length_907_cov_2.586514:1-907 changes to pilon.changes [pilon] Writing updated NODE_2814_length_907_cov_2.586514_pilon to pilon.fasta [pilon] Writing NODE_2815_length_907_cov_1.924936:1-907 changes to pilon.changes [pilon] Writing updated NODE_2815_length_907_cov_1.924936_pilon to pilon.fasta [pilon] Writing NODE_2816_length_907_cov_0.989822:1-907 changes to pilon.changes [pilon] Writing updated NODE_2816_length_907_cov_0.989822_pilon to pilon.fasta [pilon] Writing NODE_2817_length_907_cov_0.788804:1-907 changes to pilon.changes [pilon] Writing updated NODE_2817_length_907_cov_0.788804_pilon to pilon.fasta [pilon] Writing NODE_2818_length_906_cov_28.783439:1-906 changes to pilon.changes [pilon] Writing updated NODE_2818_length_906_cov_28.783439_pilon to pilon.fasta [pilon] Writing NODE_2819_length_906_cov_20.461146:1-906 changes to pilon.changes [pilon] Writing updated NODE_2819_length_906_cov_20.461146_pilon to pilon.fasta [pilon] Writing NODE_2820_length_906_cov_16.952866:1-906 changes to pilon.changes [pilon] Writing updated NODE_2820_length_906_cov_16.952866_pilon to pilon.fasta [pilon] Writing NODE_2821_length_906_cov_14.707006:1-906 changes to pilon.changes [pilon] Writing updated NODE_2821_length_906_cov_14.707006_pilon to pilon.fasta [pilon] Writing NODE_2822_length_906_cov_13.736306:1-906 changes to pilon.changes [pilon] Writing updated NODE_2822_length_906_cov_13.736306_pilon to pilon.fasta [pilon] Writing NODE_2823_length_906_cov_9.077707:1-906 changes to pilon.changes [pilon] Writing updated NODE_2823_length_906_cov_9.077707_pilon to pilon.fasta [pilon] Writing NODE_2824_length_906_cov_2.834395:1-906 changes to pilon.changes [pilon] Writing updated NODE_2824_length_906_cov_2.834395_pilon to pilon.fasta [pilon] Writing NODE_2825_length_905_cov_39.951531:1-905 changes to pilon.changes [pilon] Writing updated NODE_2825_length_905_cov_39.951531_pilon to pilon.fasta [pilon] Writing NODE_2826_length_905_cov_22.302296:1-905 changes to pilon.changes [pilon] Writing updated NODE_2826_length_905_cov_22.302296_pilon to pilon.fasta [pilon] Writing NODE_2827_length_905_cov_22.113520:1-905 changes to pilon.changes [pilon] Writing updated NODE_2827_length_905_cov_22.113520_pilon to pilon.fasta [pilon] Writing NODE_2828_length_905_cov_16.044643:1-905 changes to pilon.changes [pilon] Writing updated NODE_2828_length_905_cov_16.044643_pilon to pilon.fasta [pilon] Writing NODE_2829_length_905_cov_14.420918:1-905 changes to pilon.changes [pilon] Writing updated NODE_2829_length_905_cov_14.420918_pilon to pilon.fasta [pilon] Writing NODE_2830_length_905_cov_13.193878:1-905 changes to pilon.changes [pilon] Writing updated NODE_2830_length_905_cov_13.193878_pilon to pilon.fasta [pilon] Writing NODE_2831_length_905_cov_9.854592:1-905 changes to pilon.changes [pilon] Writing updated NODE_2831_length_905_cov_9.854592_pilon to pilon.fasta [pilon] Writing NODE_2832_length_905_cov_3.719388:1-905 changes to pilon.changes [pilon] Writing updated NODE_2832_length_905_cov_3.719388_pilon to pilon.fasta [pilon] Writing NODE_2833_length_905_cov_2.613520:1-905 changes to pilon.changes [pilon] Writing updated NODE_2833_length_905_cov_2.613520_pilon to pilon.fasta [pilon] Writing NODE_2834_length_904_cov_32.459770:1-904 changes to pilon.changes [pilon] Writing updated NODE_2834_length_904_cov_32.459770_pilon to pilon.fasta [pilon] Writing NODE_2835_length_904_cov_19.551724:1-904 changes to pilon.changes [pilon] Writing updated NODE_2835_length_904_cov_19.551724_pilon to pilon.fasta [pilon] Writing NODE_2836_length_904_cov_17.805875:1-904 changes to pilon.changes [pilon] Writing updated NODE_2836_length_904_cov_17.805875_pilon to pilon.fasta [pilon] Writing NODE_2837_length_904_cov_12.914432:1-904 changes to pilon.changes [pilon] Writing updated NODE_2837_length_904_cov_12.914432_pilon to pilon.fasta [pilon] Writing NODE_2838_length_904_cov_4.213282:1-904 changes to pilon.changes [pilon] Writing updated NODE_2838_length_904_cov_4.213282_pilon to pilon.fasta [pilon] Writing NODE_2839_length_904_cov_1.298851:1-904 changes to pilon.changes [pilon] Writing updated NODE_2839_length_904_cov_1.298851_pilon to pilon.fasta [pilon] Writing NODE_2840_length_903_cov_34.116368:1-903 changes to pilon.changes [pilon] Writing updated NODE_2840_length_903_cov_34.116368_pilon to pilon.fasta [pilon] Writing NODE_2841_length_903_cov_33.134271:1-903 changes to pilon.changes [pilon] Writing updated NODE_2841_length_903_cov_33.134271_pilon to pilon.fasta [pilon] Writing NODE_2842_length_903_cov_32.681586:1-903 changes to pilon.changes [pilon] Writing updated NODE_2842_length_903_cov_32.681586_pilon to pilon.fasta [pilon] Writing NODE_2843_length_903_cov_30.842711:1-903 changes to pilon.changes [pilon] Writing updated NODE_2843_length_903_cov_30.842711_pilon to pilon.fasta [pilon] Writing NODE_2844_length_903_cov_17.996164:1-903 changes to pilon.changes [pilon] Writing updated NODE_2844_length_903_cov_17.996164_pilon to pilon.fasta [pilon] Writing NODE_2845_length_903_cov_14.565217:1-903 changes to pilon.changes [pilon] Writing updated NODE_2845_length_903_cov_14.565217_pilon to pilon.fasta [pilon] Writing NODE_2846_length_903_cov_2.446292:1-903 changes to pilon.changes [pilon] Writing updated NODE_2846_length_903_cov_2.446292_pilon to pilon.fasta [pilon] Writing NODE_2847_length_902_cov_33.051216:1-902 changes to pilon.changes [pilon] Writing updated NODE_2847_length_902_cov_33.051216_pilon to pilon.fasta [pilon] Writing NODE_2848_length_902_cov_30.494238:1-902 changes to pilon.changes [pilon] Writing updated NODE_2848_length_902_cov_30.494238_pilon to pilon.fasta [pilon] Writing NODE_2849_length_902_cov_30.370038:1-902 changes to pilon.changes [pilon] Writing updated NODE_2849_length_902_cov_30.370038_pilon to pilon.fasta [pilon] Writing NODE_2850_length_902_cov_9.279129:1-902 changes to pilon.changes [pilon] Writing updated NODE_2850_length_902_cov_9.279129_pilon to pilon.fasta [pilon] Writing NODE_2851_length_902_cov_1.353393:1-902 changes to pilon.changes [pilon] Writing updated NODE_2851_length_902_cov_1.353393_pilon to pilon.fasta [pilon] Writing NODE_2852_length_901_cov_20.351282:1-901 changes to pilon.changes [pilon] Writing updated NODE_2852_length_901_cov_20.351282_pilon to pilon.fasta [pilon] Writing NODE_2853_length_901_cov_17.053846:1-901 changes to pilon.changes [pilon] Writing updated NODE_2853_length_901_cov_17.053846_pilon to pilon.fasta [pilon] Writing NODE_2854_length_901_cov_9.248718:1-901 changes to pilon.changes [pilon] Writing updated NODE_2854_length_901_cov_9.248718_pilon to pilon.fasta [pilon] Writing NODE_2855_length_901_cov_1.344872:1-901 changes to pilon.changes [pilon] Writing updated NODE_2855_length_901_cov_1.344872_pilon to pilon.fasta [pilon] Writing NODE_2856_length_900_cov_22.238768:1-900 changes to pilon.changes [pilon] Writing updated NODE_2856_length_900_cov_22.238768_pilon to pilon.fasta [pilon] Writing NODE_2857_length_900_cov_19.525032:1-900 changes to pilon.changes [pilon] Writing updated NODE_2857_length_900_cov_19.525032_pilon to pilon.fasta [pilon] Writing NODE_2858_length_900_cov_18.880616:1-900 changes to pilon.changes [pilon] Writing updated NODE_2858_length_900_cov_18.880616_pilon to pilon.fasta [pilon] Writing NODE_2859_length_900_cov_17.743261:1-900 changes to pilon.changes [pilon] Writing updated NODE_2859_length_900_cov_17.743261_pilon to pilon.fasta [pilon] Writing NODE_2860_length_900_cov_15.763800:1-900 changes to pilon.changes [pilon] Writing updated NODE_2860_length_900_cov_15.763800_pilon to pilon.fasta [pilon] Writing NODE_2861_length_900_cov_14.522465:1-900 changes to pilon.changes [pilon] Writing updated NODE_2861_length_900_cov_14.522465_pilon to pilon.fasta [pilon] Writing NODE_2862_length_900_cov_12.403081:1-900 changes to pilon.changes [pilon] Writing updated NODE_2862_length_900_cov_12.403081_pilon to pilon.fasta [pilon] Writing NODE_2863_length_900_cov_8.727856:1-900 changes to pilon.changes [pilon] Writing updated NODE_2863_length_900_cov_8.727856_pilon to pilon.fasta [pilon] Writing NODE_2864_length_899_cov_40.406170:1-899 changes to pilon.changes [pilon] Writing updated NODE_2864_length_899_cov_40.406170_pilon to pilon.fasta [pilon] Writing NODE_2865_length_899_cov_37.033419:1-899 changes to pilon.changes [pilon] Writing updated NODE_2865_length_899_cov_37.033419_pilon to pilon.fasta [pilon] Writing NODE_2866_length_899_cov_27.895887:1-899 changes to pilon.changes [pilon] Writing updated NODE_2866_length_899_cov_27.895887_pilon to pilon.fasta [pilon] Writing NODE_2867_length_899_cov_13.255784:1-899 changes to pilon.changes [pilon] Writing updated NODE_2867_length_899_cov_13.255784_pilon to pilon.fasta [pilon] Writing NODE_2868_length_899_cov_6.389460:1-899 changes to pilon.changes [pilon] Writing updated NODE_2868_length_899_cov_6.389460_pilon to pilon.fasta [pilon] Writing NODE_2869_length_899_cov_2.921594:1-899 changes to pilon.changes [pilon] Writing updated NODE_2869_length_899_cov_2.921594_pilon to pilon.fasta [pilon] Writing NODE_2870_length_899_cov_1.353470:1-899 changes to pilon.changes [pilon] Writing updated NODE_2870_length_899_cov_1.353470_pilon to pilon.fasta [pilon] Writing NODE_2871_length_899_cov_1.295630:1-899 changes to pilon.changes [pilon] Writing updated NODE_2871_length_899_cov_1.295630_pilon to pilon.fasta [pilon] Writing NODE_2872_length_899_cov_1.028278:1-899 changes to pilon.changes [pilon] Writing updated NODE_2872_length_899_cov_1.028278_pilon to pilon.fasta [pilon] Writing NODE_2873_length_898_cov_32.822394:1-898 changes to pilon.changes [pilon] Writing updated NODE_2873_length_898_cov_32.822394_pilon to pilon.fasta [pilon] Writing NODE_2874_length_898_cov_27.261261:1-898 changes to pilon.changes [pilon] Writing updated NODE_2874_length_898_cov_27.261261_pilon to pilon.fasta [pilon] Writing NODE_2875_length_898_cov_21.777349:1-898 changes to pilon.changes [pilon] Writing updated NODE_2875_length_898_cov_21.777349_pilon to pilon.fasta [pilon] Writing NODE_2876_length_898_cov_19.723295:1-898 changes to pilon.changes [pilon] Writing updated NODE_2876_length_898_cov_19.723295_pilon to pilon.fasta [pilon] Writing NODE_2877_length_898_cov_10.508366:1-898 changes to pilon.changes [pilon] Writing updated NODE_2877_length_898_cov_10.508366_pilon to pilon.fasta [pilon] Writing NODE_2878_length_898_cov_8.756757:1-898 changes to pilon.changes [pilon] Writing updated NODE_2878_length_898_cov_8.756757_pilon to pilon.fasta [pilon] Writing NODE_2879_length_897_cov_1.368557:1-897 changes to pilon.changes [pilon] Writing updated NODE_2879_length_897_cov_1.368557_pilon to pilon.fasta [pilon] Writing NODE_2880_length_896_cov_16.821935:1-896 changes to pilon.changes [pilon] Writing updated NODE_2880_length_896_cov_16.821935_pilon to pilon.fasta [pilon] Writing NODE_2881_length_896_cov_11.824516:1-896 changes to pilon.changes [pilon] Writing updated NODE_2881_length_896_cov_11.824516_pilon to pilon.fasta [pilon] Writing NODE_2882_length_896_cov_5.948387:1-896 changes to pilon.changes [pilon] Writing updated NODE_2882_length_896_cov_5.948387_pilon to pilon.fasta [pilon] Writing NODE_2883_length_896_cov_2.264516:1-896 changes to pilon.changes [pilon] Writing updated NODE_2883_length_896_cov_2.264516_pilon to pilon.fasta [pilon] Writing NODE_2884_length_895_cov_33.789406:1-895 changes to pilon.changes [pilon] Writing updated NODE_2884_length_895_cov_33.789406_pilon to pilon.fasta [pilon] Writing NODE_2885_length_895_cov_17.165375:1-895 changes to pilon.changes [pilon] Writing updated NODE_2885_length_895_cov_17.165375_pilon to pilon.fasta [pilon] Writing NODE_2886_length_895_cov_16.609819:1-895 changes to pilon.changes [pilon] Writing updated NODE_2886_length_895_cov_16.609819_pilon to pilon.fasta [pilon] Writing NODE_2887_length_895_cov_15.082687:1-895 changes to pilon.changes [pilon] Writing updated NODE_2887_length_895_cov_15.082687_pilon to pilon.fasta [pilon] Writing NODE_2888_length_895_cov_4.187339:1-895 changes to pilon.changes [pilon] Writing updated NODE_2888_length_895_cov_4.187339_pilon to pilon.fasta [pilon] Writing NODE_2889_length_895_cov_2.142119:1-895 changes to pilon.changes [pilon] Writing updated NODE_2889_length_895_cov_2.142119_pilon to pilon.fasta [pilon] Writing NODE_2890_length_895_cov_1.997416:1-895 changes to pilon.changes [pilon] Writing updated NODE_2890_length_895_cov_1.997416_pilon to pilon.fasta [pilon] Writing NODE_2891_length_894_cov_42.861578:1-894 changes to pilon.changes [pilon] Writing updated NODE_2891_length_894_cov_42.861578_pilon to pilon.fasta [pilon] Writing NODE_2892_length_894_cov_7.001294:1-894 changes to pilon.changes [pilon] Writing updated NODE_2892_length_894_cov_7.001294_pilon to pilon.fasta [pilon] Writing NODE_2893_length_894_cov_3.981889:1-894 changes to pilon.changes [pilon] Writing updated NODE_2893_length_894_cov_3.981889_pilon to pilon.fasta [pilon] Writing NODE_2894_length_894_cov_2.147477:1-894 changes to pilon.changes [pilon] Writing updated NODE_2894_length_894_cov_2.147477_pilon to pilon.fasta [pilon] Writing NODE_2895_length_894_cov_1.516171:1-894 changes to pilon.changes [pilon] Writing updated NODE_2895_length_894_cov_1.516171_pilon to pilon.fasta [pilon] Writing NODE_2896_length_893_cov_36.361399:1-893 changes to pilon.changes [pilon] Writing updated NODE_2896_length_893_cov_36.361399_pilon to pilon.fasta [pilon] Writing NODE_2897_length_893_cov_14.066062:1-893 changes to pilon.changes [pilon] Writing updated NODE_2897_length_893_cov_14.066062_pilon to pilon.fasta [pilon] Writing NODE_2898_length_893_cov_10.915803:1-893 changes to pilon.changes [pilon] Writing updated NODE_2898_length_893_cov_10.915803_pilon to pilon.fasta [pilon] Writing NODE_2899_length_893_cov_1.032383:1-893 changes to pilon.changes [pilon] Writing updated NODE_2899_length_893_cov_1.032383_pilon to pilon.fasta [pilon] Writing NODE_2900_length_892_cov_21.836576:1-892 changes to pilon.changes [pilon] Writing updated NODE_2900_length_892_cov_21.836576_pilon to pilon.fasta [pilon] Writing NODE_2901_length_892_cov_3.738003:1-892 changes to pilon.changes [pilon] Writing updated NODE_2901_length_892_cov_3.738003_pilon to pilon.fasta [pilon] Writing NODE_2902_length_892_cov_3.661479:1-892 changes to pilon.changes [pilon] Writing updated NODE_2902_length_892_cov_3.661479_pilon to pilon.fasta [pilon] Writing NODE_2903_length_892_cov_2.743191:1-892 changes to pilon.changes [pilon] Writing updated NODE_2903_length_892_cov_2.743191_pilon to pilon.fasta [pilon] Writing NODE_2904_length_892_cov_1.317769:1-892 changes to pilon.changes [pilon] Writing updated NODE_2904_length_892_cov_1.317769_pilon to pilon.fasta [pilon] Writing NODE_2905_length_892_cov_0.944228:1-892 changes to pilon.changes [pilon] Writing updated NODE_2905_length_892_cov_0.944228_pilon to pilon.fasta [pilon] Writing NODE_2906_length_891_cov_24.193506:1-891 changes to pilon.changes [pilon] Writing updated NODE_2906_length_891_cov_24.193506_pilon to pilon.fasta [pilon] Writing NODE_2907_length_891_cov_16.587013:1-891 changes to pilon.changes [pilon] Writing updated NODE_2907_length_891_cov_16.587013_pilon to pilon.fasta [pilon] Writing NODE_2908_length_891_cov_3.945455:1-891 changes to pilon.changes [pilon] Writing updated NODE_2908_length_891_cov_3.945455_pilon to pilon.fasta [pilon] Writing NODE_2909_length_891_cov_2.083117:1-891 changes to pilon.changes [pilon] Writing updated NODE_2909_length_891_cov_2.083117_pilon to pilon.fasta [pilon] Writing NODE_2910_length_891_cov_1.597403:1-891 changes to pilon.changes [pilon] Writing updated NODE_2910_length_891_cov_1.597403_pilon to pilon.fasta [pilon] Writing NODE_2911_length_890_cov_26.201560:1-890 changes to pilon.changes [pilon] Writing updated NODE_2911_length_890_cov_26.201560_pilon to pilon.fasta [pilon] Writing NODE_2912_length_890_cov_13.886866:1-890 changes to pilon.changes [pilon] Writing updated NODE_2912_length_890_cov_13.886866_pilon to pilon.fasta [pilon] Writing NODE_2913_length_890_cov_12.226268:1-890 changes to pilon.changes [pilon] Writing updated NODE_2913_length_890_cov_12.226268_pilon to pilon.fasta [pilon] Writing NODE_2914_length_890_cov_2.676203:1-890 changes to pilon.changes [pilon] Writing updated NODE_2914_length_890_cov_2.676203_pilon to pilon.fasta [pilon] Writing NODE_2915_length_889_cov_49.102865:1-889 changes to pilon.changes [pilon] Writing updated NODE_2915_length_889_cov_49.102865_pilon to pilon.fasta [pilon] Writing NODE_2916_length_889_cov_39.128906:1-889 changes to pilon.changes [pilon] Writing updated NODE_2916_length_889_cov_39.128906_pilon to pilon.fasta [pilon] Writing NODE_2917_length_889_cov_28.289062:1-889 changes to pilon.changes [pilon] Writing updated NODE_2917_length_889_cov_28.289062_pilon to pilon.fasta [pilon] Writing NODE_2918_length_889_cov_22.428385:1-889 changes to pilon.changes [pilon] Writing updated NODE_2918_length_889_cov_22.428385_pilon to pilon.fasta [pilon] Writing NODE_2919_length_889_cov_19.101562:1-889 changes to pilon.changes [pilon] Writing updated NODE_2919_length_889_cov_19.101562_pilon to pilon.fasta [pilon] Writing NODE_2920_length_889_cov_2.691406:1-889 changes to pilon.changes [pilon] Writing updated NODE_2920_length_889_cov_2.691406_pilon to pilon.fasta [pilon] Writing NODE_2921_length_888_cov_29.533246:1-888 changes to pilon.changes [pilon] Writing updated NODE_2921_length_888_cov_29.533246_pilon to pilon.fasta [pilon] Writing NODE_2922_length_888_cov_27.054759:1-888 changes to pilon.changes [pilon] Writing updated NODE_2922_length_888_cov_27.054759_pilon to pilon.fasta [pilon] Writing NODE_2923_length_888_cov_23.211213:1-888 changes to pilon.changes [pilon] Writing updated NODE_2923_length_888_cov_23.211213_pilon to pilon.fasta [pilon] Writing NODE_2924_length_888_cov_20.271186:1-888 changes to pilon.changes [pilon] Writing updated NODE_2924_length_888_cov_20.271186_pilon to pilon.fasta [pilon] Writing NODE_2925_length_888_cov_2.599739:1-888 changes to pilon.changes [pilon] Writing updated NODE_2925_length_888_cov_2.599739_pilon to pilon.fasta [pilon] Writing NODE_2926_length_887_cov_29.204961:1-887 changes to pilon.changes [pilon] Writing updated NODE_2926_length_887_cov_29.204961_pilon to pilon.fasta [pilon] Writing NODE_2927_length_887_cov_28.637076:1-887 changes to pilon.changes [pilon] Writing updated NODE_2927_length_887_cov_28.637076_pilon to pilon.fasta [pilon] Writing NODE_2928_length_887_cov_5.271540:1-887 changes to pilon.changes [pilon] Writing updated NODE_2928_length_887_cov_5.271540_pilon to pilon.fasta [pilon] Writing NODE_2929_length_887_cov_1.919060:1-887 changes to pilon.changes [pilon] Writing updated NODE_2929_length_887_cov_1.919060_pilon to pilon.fasta [pilon] Writing NODE_2930_length_885_cov_31.098168:1-885 changes to pilon.changes [pilon] Writing updated NODE_2930_length_885_cov_31.098168_pilon to pilon.fasta [pilon] Writing NODE_2931_length_885_cov_27.662304:1-885 changes to pilon.changes [pilon] Writing updated NODE_2931_length_885_cov_27.662304_pilon to pilon.fasta [pilon] Writing NODE_2932_length_885_cov_21.143979:1-885 changes to pilon.changes [pilon] Writing updated NODE_2932_length_885_cov_21.143979_pilon to pilon.fasta [pilon] Writing NODE_2933_length_885_cov_18.880890:1-885 changes to pilon.changes [pilon] Writing updated NODE_2933_length_885_cov_18.880890_pilon to pilon.fasta [pilon] Writing NODE_2934_length_885_cov_10.506545:1-885 changes to pilon.changes [pilon] Writing updated NODE_2934_length_885_cov_10.506545_pilon to pilon.fasta [pilon] Writing NODE_2935_length_884_cov_28.486239:1-884 changes to pilon.changes [pilon] Writing updated NODE_2935_length_884_cov_28.486239_pilon to pilon.fasta [pilon] Writing NODE_2936_length_884_cov_25.086501:1-884 changes to pilon.changes [pilon] Writing updated NODE_2936_length_884_cov_25.086501_pilon to pilon.fasta [pilon] Writing NODE_2937_length_884_cov_23.288336:1-884 changes to pilon.changes [pilon] Writing updated NODE_2937_length_884_cov_23.288336_pilon to pilon.fasta [pilon] Writing NODE_2938_length_884_cov_5.600262:1-884 changes to pilon.changes [pilon] Writing updated NODE_2938_length_884_cov_5.600262_pilon to pilon.fasta [pilon] Writing NODE_2939_length_884_cov_3.859764:1-884 changes to pilon.changes [pilon] Writing updated NODE_2939_length_884_cov_3.859764_pilon to pilon.fasta [pilon] Writing NODE_2940_length_884_cov_2.225426:1-884 changes to pilon.changes [pilon] Writing updated NODE_2940_length_884_cov_2.225426_pilon to pilon.fasta [pilon] Writing NODE_2941_length_883_cov_14.081365:1-883 changes to pilon.changes [pilon] Writing updated NODE_2941_length_883_cov_14.081365_pilon to pilon.fasta [pilon] Writing NODE_2942_length_883_cov_2.198163:1-883 changes to pilon.changes [pilon] Writing updated NODE_2942_length_883_cov_2.198163_pilon to pilon.fasta [pilon] Writing NODE_2943_length_883_cov_1.955381:1-883 changes to pilon.changes [pilon] Writing updated NODE_2943_length_883_cov_1.955381_pilon to pilon.fasta [pilon] Writing NODE_2944_length_882_cov_45.124836:1-882 changes to pilon.changes [pilon] Writing updated NODE_2944_length_882_cov_45.124836_pilon to pilon.fasta [pilon] Writing NODE_2945_length_882_cov_29.319317:1-882 changes to pilon.changes [pilon] Writing updated NODE_2945_length_882_cov_29.319317_pilon to pilon.fasta [pilon] Writing NODE_2946_length_882_cov_16.779238:1-882 changes to pilon.changes [pilon] Writing updated NODE_2946_length_882_cov_16.779238_pilon to pilon.fasta [pilon] Writing NODE_2947_length_882_cov_14.115637:1-882 changes to pilon.changes [pilon] Writing updated NODE_2947_length_882_cov_14.115637_pilon to pilon.fasta [pilon] Writing NODE_2948_length_882_cov_2.191853:1-882 changes to pilon.changes [pilon] Writing updated NODE_2948_length_882_cov_2.191853_pilon to pilon.fasta [pilon] Writing NODE_2949_length_882_cov_1.860710:1-882 changes to pilon.changes [pilon] Writing updated NODE_2949_length_882_cov_1.860710_pilon to pilon.fasta [pilon] Writing NODE_2950_length_882_cov_1.005256:1-882 changes to pilon.changes [pilon] Writing updated NODE_2950_length_882_cov_1.005256_pilon to pilon.fasta [pilon] Writing NODE_2951_length_881_cov_19.477632:1-881 changes to pilon.changes [pilon] Writing updated NODE_2951_length_881_cov_19.477632_pilon to pilon.fasta [pilon] Writing NODE_2952_length_881_cov_17.484211:1-881 changes to pilon.changes [pilon] Writing updated NODE_2952_length_881_cov_17.484211_pilon to pilon.fasta [pilon] Writing NODE_2953_length_881_cov_16.998684:1-881 changes to pilon.changes [pilon] Writing updated NODE_2953_length_881_cov_16.998684_pilon to pilon.fasta [pilon] Writing NODE_2954_length_881_cov_13.011842:1-881 changes to pilon.changes [pilon] Writing updated NODE_2954_length_881_cov_13.011842_pilon to pilon.fasta [pilon] Writing NODE_2955_length_881_cov_12.893421:1-881 changes to pilon.changes [pilon] Writing updated NODE_2955_length_881_cov_12.893421_pilon to pilon.fasta [pilon] Writing NODE_2956_length_881_cov_12.632895:1-881 changes to pilon.changes [pilon] Writing updated NODE_2956_length_881_cov_12.632895_pilon to pilon.fasta [pilon] Writing NODE_2957_length_881_cov_3.686842:1-881 changes to pilon.changes [pilon] Writing updated NODE_2957_length_881_cov_3.686842_pilon to pilon.fasta [pilon] Writing NODE_2958_length_881_cov_2.705263:1-881 changes to pilon.changes [pilon] Writing updated NODE_2958_length_881_cov_2.705263_pilon to pilon.fasta [pilon] Writing NODE_2959_length_881_cov_2.256579:1-881 changes to pilon.changes [pilon] Writing updated NODE_2959_length_881_cov_2.256579_pilon to pilon.fasta [pilon] Writing NODE_2960_length_881_cov_2.223684:1-881 changes to pilon.changes [pilon] Writing updated NODE_2960_length_881_cov_2.223684_pilon to pilon.fasta [pilon] Writing NODE_2961_length_881_cov_0.780263:1-881 changes to pilon.changes [pilon] Writing updated NODE_2961_length_881_cov_0.780263_pilon to pilon.fasta [pilon] Writing NODE_2962_length_880_cov_29.438735:1-880 changes to pilon.changes [pilon] Writing updated NODE_2962_length_880_cov_29.438735_pilon to pilon.fasta [pilon] Writing NODE_2963_length_880_cov_21.194993:1-880 changes to pilon.changes [pilon] Writing updated NODE_2963_length_880_cov_21.194993_pilon to pilon.fasta [pilon] Writing NODE_2964_length_880_cov_18.075099:1-880 changes to pilon.changes [pilon] Writing updated NODE_2964_length_880_cov_18.075099_pilon to pilon.fasta [pilon] Writing NODE_2965_length_880_cov_12.959157:1-880 changes to pilon.changes [pilon] Writing updated NODE_2965_length_880_cov_12.959157_pilon to pilon.fasta [pilon] Writing NODE_2966_length_880_cov_10.297760:1-880 changes to pilon.changes [pilon] Writing updated NODE_2966_length_880_cov_10.297760_pilon to pilon.fasta [pilon] Writing NODE_2967_length_880_cov_5.694335:1-880 changes to pilon.changes [pilon] Writing updated NODE_2967_length_880_cov_5.694335_pilon to pilon.fasta [pilon] Writing NODE_2968_length_880_cov_1.988142:1-880 changes to pilon.changes [pilon] Writing updated NODE_2968_length_880_cov_1.988142_pilon to pilon.fasta [pilon] Writing NODE_2969_length_879_cov_37.964380:1-879 changes to pilon.changes [pilon] Writing updated NODE_2969_length_879_cov_37.964380_pilon to pilon.fasta [pilon] Writing NODE_2970_length_879_cov_14.468338:1-879 changes to pilon.changes [pilon] Writing updated NODE_2970_length_879_cov_14.468338_pilon to pilon.fasta [pilon] Writing NODE_2971_length_879_cov_14.437995:1-879 changes to pilon.changes [pilon] Writing updated NODE_2971_length_879_cov_14.437995_pilon to pilon.fasta [pilon] Writing NODE_2972_length_879_cov_10.098945:1-879 changes to pilon.changes [pilon] Writing updated NODE_2972_length_879_cov_10.098945_pilon to pilon.fasta [pilon] Writing NODE_2973_length_879_cov_4.820580:1-879 changes to pilon.changes [pilon] Writing updated NODE_2973_length_879_cov_4.820580_pilon to pilon.fasta [pilon] Writing NODE_2974_length_879_cov_3.749340:1-879 changes to pilon.changes [pilon] Writing updated NODE_2974_length_879_cov_3.749340_pilon to pilon.fasta [pilon] Writing NODE_2975_length_879_cov_1.511873:1-879 changes to pilon.changes [pilon] Writing updated NODE_2975_length_879_cov_1.511873_pilon to pilon.fasta [pilon] Writing NODE_2976_length_878_cov_46.221929:1-878 changes to pilon.changes [pilon] Writing updated NODE_2976_length_878_cov_46.221929_pilon to pilon.fasta [pilon] Writing NODE_2977_length_878_cov_11.623514:1-878 changes to pilon.changes [pilon] Writing updated NODE_2977_length_878_cov_11.623514_pilon to pilon.fasta [pilon] Writing NODE_2978_length_878_cov_6.887715:1-878 changes to pilon.changes [pilon] Writing updated NODE_2978_length_878_cov_6.887715_pilon to pilon.fasta [pilon] Writing NODE_2979_length_878_cov_3.166446:1-878 changes to pilon.changes [pilon] Writing updated NODE_2979_length_878_cov_3.166446_pilon to pilon.fasta [pilon] Writing NODE_2980_length_877_cov_30.996032:1-877 changes to pilon.changes [pilon] Writing updated NODE_2980_length_877_cov_30.996032_pilon to pilon.fasta [pilon] Writing NODE_2981_length_877_cov_14.246032:1-877 changes to pilon.changes [pilon] Writing updated NODE_2981_length_877_cov_14.246032_pilon to pilon.fasta [pilon] Writing NODE_2982_length_877_cov_13.103175:1-877 changes to pilon.changes [pilon] Writing updated NODE_2982_length_877_cov_13.103175_pilon to pilon.fasta [pilon] Writing NODE_2983_length_877_cov_4.298942:1-877 changes to pilon.changes [pilon] Writing updated NODE_2983_length_877_cov_4.298942_pilon to pilon.fasta [pilon] Writing NODE_2984_length_876_cov_15.018543:1-876 changes to pilon.changes [pilon] Writing updated NODE_2984_length_876_cov_15.018543_pilon to pilon.fasta [pilon] Writing NODE_2985_length_876_cov_13.698013:1-876 changes to pilon.changes [pilon] Writing updated NODE_2985_length_876_cov_13.698013_pilon to pilon.fasta [pilon] Writing NODE_2986_length_875_cov_26.757294:1-875 changes to pilon.changes [pilon] Writing updated NODE_2986_length_875_cov_26.757294_pilon to pilon.fasta [pilon] Writing NODE_2987_length_875_cov_21.992042:1-875 changes to pilon.changes [pilon] Writing updated NODE_2987_length_875_cov_21.992042_pilon to pilon.fasta [pilon] Writing NODE_2988_length_874_cov_44.192563:1-874 changes to pilon.changes [pilon] Writing updated NODE_2988_length_874_cov_44.192563_pilon to pilon.fasta [pilon] Writing NODE_2989_length_874_cov_36.499336:1-874 changes to pilon.changes [pilon] Writing updated NODE_2989_length_874_cov_36.499336_pilon to pilon.fasta [pilon] Writing NODE_2990_length_874_cov_26.405046:1-874 changes to pilon.changes [pilon] Writing updated NODE_2990_length_874_cov_26.405046_pilon to pilon.fasta [pilon] Writing NODE_2991_length_874_cov_20.667995:1-874 changes to pilon.changes [pilon] Writing updated NODE_2991_length_874_cov_20.667995_pilon to pilon.fasta [pilon] Writing NODE_2992_length_874_cov_10.389110:1-874 changes to pilon.changes [pilon] Writing updated NODE_2992_length_874_cov_10.389110_pilon to pilon.fasta [pilon] Writing NODE_2993_length_874_cov_9.912351:1-874 changes to pilon.changes [pilon] Writing updated NODE_2993_length_874_cov_9.912351_pilon to pilon.fasta [pilon] Writing NODE_2994_length_874_cov_6.296149:1-874 changes to pilon.changes [pilon] Writing updated NODE_2994_length_874_cov_6.296149_pilon to pilon.fasta [pilon] Writing NODE_2995_length_874_cov_2.030544:1-874 changes to pilon.changes [pilon] Writing updated NODE_2995_length_874_cov_2.030544_pilon to pilon.fasta [pilon] Writing NODE_2996_length_874_cov_1.921647:1-874 changes to pilon.changes [pilon] Writing updated NODE_2996_length_874_cov_1.921647_pilon to pilon.fasta [pilon] Writing NODE_2997_length_874_cov_1.423639:1-874 changes to pilon.changes [pilon] Writing updated NODE_2997_length_874_cov_1.423639_pilon to pilon.fasta [pilon] Writing NODE_2998_length_874_cov_1.338645:1-874 changes to pilon.changes [pilon] Writing updated NODE_2998_length_874_cov_1.338645_pilon to pilon.fasta [pilon] Writing NODE_2999_length_873_cov_22.438830:1-873 changes to pilon.changes [pilon] Writing updated NODE_2999_length_873_cov_22.438830_pilon to pilon.fasta [pilon] Writing NODE_3000_length_873_cov_15.454787:1-873 changes to pilon.changes [pilon] Writing updated NODE_3000_length_873_cov_15.454787_pilon to pilon.fasta [pilon] Writing NODE_3001_length_873_cov_13.617021:1-873 changes to pilon.changes [pilon] Writing updated NODE_3001_length_873_cov_13.617021_pilon to pilon.fasta [pilon] Writing NODE_3002_length_873_cov_7.355053:1-873 changes to pilon.changes [pilon] Writing updated NODE_3002_length_873_cov_7.355053_pilon to pilon.fasta [pilon] Writing NODE_3003_length_873_cov_6.900266:1-873 changes to pilon.changes [pilon] Writing updated NODE_3003_length_873_cov_6.900266_pilon to pilon.fasta [pilon] Writing NODE_3004_length_873_cov_3.831117:1-873 changes to pilon.changes [pilon] Writing updated NODE_3004_length_873_cov_3.831117_pilon to pilon.fasta [pilon] Writing NODE_3005_length_872_cov_8.952064:1-872 changes to pilon.changes [pilon] Writing updated NODE_3005_length_872_cov_8.952064_pilon to pilon.fasta [pilon] Writing NODE_3006_length_872_cov_8.585885:1-872 changes to pilon.changes [pilon] Writing updated NODE_3006_length_872_cov_8.585885_pilon to pilon.fasta [pilon] Writing NODE_3007_length_872_cov_4.749667:1-872 changes to pilon.changes [pilon] Writing updated NODE_3007_length_872_cov_4.749667_pilon to pilon.fasta [pilon] Writing NODE_3008_length_872_cov_0.470040:1-872 changes to pilon.changes [pilon] Writing updated NODE_3008_length_872_cov_0.470040_pilon to pilon.fasta [pilon] Writing NODE_3009_length_871_cov_23.404000:1-871 changes to pilon.changes [pilon] Writing updated NODE_3009_length_871_cov_23.404000_pilon to pilon.fasta [pilon] Writing NODE_3010_length_871_cov_12.044000:1-871 changes to pilon.changes [pilon] Writing updated NODE_3010_length_871_cov_12.044000_pilon to pilon.fasta [pilon] Writing NODE_3011_length_871_cov_8.720000:1-871 changes to pilon.changes [pilon] Writing updated NODE_3011_length_871_cov_8.720000_pilon to pilon.fasta [pilon] Writing NODE_3012_length_871_cov_3.838667:1-871 changes to pilon.changes [pilon] Writing updated NODE_3012_length_871_cov_3.838667_pilon to pilon.fasta [pilon] Writing NODE_3013_length_871_cov_2.033333:1-871 changes to pilon.changes [pilon] Writing updated NODE_3013_length_871_cov_2.033333_pilon to pilon.fasta [pilon] Writing NODE_3014_length_871_cov_0.778667:1-871 changes to pilon.changes [pilon] Writing updated NODE_3014_length_871_cov_0.778667_pilon to pilon.fasta [pilon] Writing NODE_3015_length_870_cov_27.260347:1-870 changes to pilon.changes [pilon] Writing updated NODE_3015_length_870_cov_27.260347_pilon to pilon.fasta [pilon] Writing NODE_3016_length_870_cov_17.069426:1-870 changes to pilon.changes [pilon] Writing updated NODE_3016_length_870_cov_17.069426_pilon to pilon.fasta [pilon] Writing NODE_3017_length_870_cov_15.626168:1-870 changes to pilon.changes [pilon] Writing updated NODE_3017_length_870_cov_15.626168_pilon to pilon.fasta [pilon] Writing NODE_3018_length_870_cov_13.301736:1-870 changes to pilon.changes [pilon] Writing updated NODE_3018_length_870_cov_13.301736_pilon to pilon.fasta [pilon] Writing NODE_3019_length_870_cov_3.129506:1-870 changes to pilon.changes [pilon] Writing updated NODE_3019_length_870_cov_3.129506_pilon to pilon.fasta [pilon] Writing NODE_3020_length_869_cov_25.387701:1-869 changes to pilon.changes [pilon] Writing updated NODE_3020_length_869_cov_25.387701_pilon to pilon.fasta [pilon] Writing NODE_3021_length_869_cov_13.449198:1-869 changes to pilon.changes [pilon] Writing updated NODE_3021_length_869_cov_13.449198_pilon to pilon.fasta [pilon] Writing NODE_3022_length_869_cov_10.552139:1-869 changes to pilon.changes [pilon] Writing updated NODE_3022_length_869_cov_10.552139_pilon to pilon.fasta [pilon] Writing NODE_3023_length_869_cov_3.639037:1-869 changes to pilon.changes [pilon] Writing updated NODE_3023_length_869_cov_3.639037_pilon to pilon.fasta [pilon] Writing NODE_3024_length_868_cov_48.234270:1-868 changes to pilon.changes [pilon] Writing updated NODE_3024_length_868_cov_48.234270_pilon to pilon.fasta [pilon] Writing NODE_3025_length_868_cov_20.953146:1-868 changes to pilon.changes [pilon] Writing updated NODE_3025_length_868_cov_20.953146_pilon to pilon.fasta [pilon] Writing NODE_3026_length_868_cov_15.504685:1-868 changes to pilon.changes [pilon] Writing updated NODE_3026_length_868_cov_15.504685_pilon to pilon.fasta [pilon] Writing NODE_3027_length_868_cov_3.377510:1-868 changes to pilon.changes [pilon] Writing updated NODE_3027_length_868_cov_3.377510_pilon to pilon.fasta [pilon] Writing NODE_3028_length_868_cov_2.485944:1-868 changes to pilon.changes [pilon] Writing updated NODE_3028_length_868_cov_2.485944_pilon to pilon.fasta [pilon] Writing NODE_3029_length_868_cov_1.290495:1-868 changes to pilon.changes [pilon] Writing updated NODE_3029_length_868_cov_1.290495_pilon to pilon.fasta [pilon] Writing NODE_3030_length_868_cov_1.136546:1-868 changes to pilon.changes [pilon] Writing updated NODE_3030_length_868_cov_1.136546_pilon to pilon.fasta [pilon] Writing NODE_3031_length_868_cov_0.843373:1-868 changes to pilon.changes [pilon] Writing updated NODE_3031_length_868_cov_0.843373_pilon to pilon.fasta [pilon] Writing NODE_3032_length_867_cov_23.056300:1-867 changes to pilon.changes [pilon] Writing updated NODE_3032_length_867_cov_23.056300_pilon to pilon.fasta [pilon] Writing NODE_3033_length_867_cov_22.572386:1-867 changes to pilon.changes [pilon] Writing updated NODE_3033_length_867_cov_22.572386_pilon to pilon.fasta [pilon] Writing NODE_3034_length_867_cov_22.061662:1-867 changes to pilon.changes [pilon] Writing updated NODE_3034_length_867_cov_22.061662_pilon to pilon.fasta [pilon] Writing NODE_3035_length_867_cov_5.313673:1-867 changes to pilon.changes [pilon] Writing updated NODE_3035_length_867_cov_5.313673_pilon to pilon.fasta [pilon] Writing NODE_3036_length_867_cov_3.329759:1-867 changes to pilon.changes [pilon] Writing updated NODE_3036_length_867_cov_3.329759_pilon to pilon.fasta [pilon] Writing NODE_3037_length_866_cov_36.943624:1-866 changes to pilon.changes [pilon] Writing updated NODE_3037_length_866_cov_36.943624_pilon to pilon.fasta [pilon] Writing NODE_3038_length_866_cov_33.148993:1-866 changes to pilon.changes [pilon] Writing updated NODE_3038_length_866_cov_33.148993_pilon to pilon.fasta [pilon] Writing NODE_3039_length_866_cov_17.154362:1-866 changes to pilon.changes [pilon] Writing updated NODE_3039_length_866_cov_17.154362_pilon to pilon.fasta [pilon] Writing NODE_3040_length_866_cov_17.099329:1-866 changes to pilon.changes [pilon] Writing updated NODE_3040_length_866_cov_17.099329_pilon to pilon.fasta [pilon] Writing NODE_3041_length_866_cov_14.452349:1-866 changes to pilon.changes [pilon] Writing updated NODE_3041_length_866_cov_14.452349_pilon to pilon.fasta [pilon] Writing NODE_3042_length_865_cov_9.321237:1-865 changes to pilon.changes [pilon] Writing updated NODE_3042_length_865_cov_9.321237_pilon to pilon.fasta [pilon] Writing NODE_3043_length_864_cov_20.738896:1-864 changes to pilon.changes [pilon] Writing updated NODE_3043_length_864_cov_20.738896_pilon to pilon.fasta [pilon] Writing NODE_3044_length_864_cov_20.728129:1-864 changes to pilon.changes [pilon] Writing updated NODE_3044_length_864_cov_20.728129_pilon to pilon.fasta [pilon] Writing NODE_3045_length_864_cov_19.449529:1-864 changes to pilon.changes [pilon] Writing updated NODE_3045_length_864_cov_19.449529_pilon to pilon.fasta [pilon] Writing NODE_3046_length_864_cov_18.796770:1-864 changes to pilon.changes [pilon] Writing updated NODE_3046_length_864_cov_18.796770_pilon to pilon.fasta [pilon] Writing NODE_3047_length_864_cov_16.518170:1-864 changes to pilon.changes [pilon] Writing updated NODE_3047_length_864_cov_16.518170_pilon to pilon.fasta [pilon] Writing NODE_3048_length_864_cov_1.409152:1-864 changes to pilon.changes [pilon] Writing updated NODE_3048_length_864_cov_1.409152_pilon to pilon.fasta [pilon] Writing NODE_3049_length_863_cov_23.688679:1-863 changes to pilon.changes [pilon] Writing updated NODE_3049_length_863_cov_23.688679_pilon to pilon.fasta [pilon] Writing NODE_3050_length_863_cov_21.316712:1-863 changes to pilon.changes [pilon] Writing updated NODE_3050_length_863_cov_21.316712_pilon to pilon.fasta [pilon] Writing NODE_3051_length_862_cov_15.421053:1-862 changes to pilon.changes [pilon] Writing updated NODE_3051_length_862_cov_15.421053_pilon to pilon.fasta [pilon] Writing NODE_3052_length_862_cov_9.364372:1-862 changes to pilon.changes [pilon] Writing updated NODE_3052_length_862_cov_9.364372_pilon to pilon.fasta [pilon] Writing NODE_3053_length_862_cov_9.296896:1-862 changes to pilon.changes [pilon] Writing updated NODE_3053_length_862_cov_9.296896_pilon to pilon.fasta [pilon] Writing NODE_3054_length_862_cov_2.238866:1-862 changes to pilon.changes [pilon] Writing updated NODE_3054_length_862_cov_2.238866_pilon to pilon.fasta [pilon] Writing NODE_3055_length_862_cov_2.102564:1-862 changes to pilon.changes [pilon] Writing updated NODE_3055_length_862_cov_2.102564_pilon to pilon.fasta [pilon] Writing NODE_3056_length_861_cov_31.220270:1-861 changes to pilon.changes [pilon] Writing updated NODE_3056_length_861_cov_31.220270_pilon to pilon.fasta [pilon] Writing NODE_3057_length_861_cov_29.255405:1-861 changes to pilon.changes [pilon] Writing updated NODE_3057_length_861_cov_29.255405_pilon to pilon.fasta [pilon] Writing NODE_3058_length_861_cov_29.035135:1-861 changes to pilon.changes [pilon] Writing updated NODE_3058_length_861_cov_29.035135_pilon to pilon.fasta [pilon] Writing NODE_3059_length_861_cov_17.167568:1-861 changes to pilon.changes [pilon] Writing updated NODE_3059_length_861_cov_17.167568_pilon to pilon.fasta [pilon] Writing NODE_3060_length_861_cov_7.679730:1-861 changes to pilon.changes [pilon] Writing updated NODE_3060_length_861_cov_7.679730_pilon to pilon.fasta [pilon] Writing NODE_3061_length_861_cov_2.774324:1-861 changes to pilon.changes [pilon] Writing updated NODE_3061_length_861_cov_2.774324_pilon to pilon.fasta [pilon] Writing NODE_3062_length_861_cov_1.282432:1-861 changes to pilon.changes [pilon] Writing updated NODE_3062_length_861_cov_1.282432_pilon to pilon.fasta [pilon] Writing NODE_3063_length_860_cov_23.253045:1-860 changes to pilon.changes [pilon] Writing updated NODE_3063_length_860_cov_23.253045_pilon to pilon.fasta [pilon] Writing NODE_3064_length_860_cov_13.185386:1-860 changes to pilon.changes [pilon] Writing updated NODE_3064_length_860_cov_13.185386_pilon to pilon.fasta [pilon] Writing NODE_3065_length_860_cov_7.382950:1-860 changes to pilon.changes [pilon] Writing updated NODE_3065_length_860_cov_7.382950_pilon to pilon.fasta [pilon] Writing NODE_3066_length_860_cov_1.299053:1-860 changes to pilon.changes [pilon] Writing updated NODE_3066_length_860_cov_1.299053_pilon to pilon.fasta [pilon] Writing NODE_3067_length_860_cov_1.125846:1-860 changes to pilon.changes [pilon] Writing updated NODE_3067_length_860_cov_1.125846_pilon to pilon.fasta [pilon] Writing NODE_3068_length_859_cov_21.157182:1-859 changes to pilon.changes [pilon] Writing updated NODE_3068_length_859_cov_21.157182_pilon to pilon.fasta [pilon] Writing NODE_3069_length_859_cov_19.325203:1-859 changes to pilon.changes [pilon] Writing updated NODE_3069_length_859_cov_19.325203_pilon to pilon.fasta [pilon] Writing NODE_3070_length_859_cov_3.436314:1-859 changes to pilon.changes [pilon] Writing updated NODE_3070_length_859_cov_3.436314_pilon to pilon.fasta [pilon] Writing NODE_3071_length_859_cov_1.688347:1-859 changes to pilon.changes [pilon] Writing updated NODE_3071_length_859_cov_1.688347_pilon to pilon.fasta [pilon] Writing NODE_3072_length_859_cov_1.609756:1-859 changes to pilon.changes [pilon] Writing updated NODE_3072_length_859_cov_1.609756_pilon to pilon.fasta [pilon] Writing NODE_3073_length_858_cov_35.523745:1-858 changes to pilon.changes [pilon] Writing updated NODE_3073_length_858_cov_35.523745_pilon to pilon.fasta [pilon] Writing NODE_3074_length_858_cov_24.690638:1-858 changes to pilon.changes [pilon] Writing updated NODE_3074_length_858_cov_24.690638_pilon to pilon.fasta [pilon] Writing NODE_3075_length_858_cov_24.396201:1-858 changes to pilon.changes [pilon] Writing updated NODE_3075_length_858_cov_24.396201_pilon to pilon.fasta [pilon] Writing NODE_3076_length_858_cov_7.252374:1-858 changes to pilon.changes [pilon] Writing updated NODE_3076_length_858_cov_7.252374_pilon to pilon.fasta [pilon] Writing NODE_3077_length_858_cov_5.729986:1-858 changes to pilon.changes [pilon] Writing updated NODE_3077_length_858_cov_5.729986_pilon to pilon.fasta [pilon] Writing NODE_3078_length_858_cov_3.668928:1-858 changes to pilon.changes [pilon] Writing updated NODE_3078_length_858_cov_3.668928_pilon to pilon.fasta [pilon] Writing NODE_3079_length_858_cov_1.675712:1-858 changes to pilon.changes [pilon] Writing updated NODE_3079_length_858_cov_1.675712_pilon to pilon.fasta [pilon] Writing NODE_3080_length_857_cov_37.550272:1-857 changes to pilon.changes [pilon] Writing updated NODE_3080_length_857_cov_37.550272_pilon to pilon.fasta [pilon] Writing NODE_3081_length_857_cov_24.819293:1-857 changes to pilon.changes [pilon] Writing updated NODE_3081_length_857_cov_24.819293_pilon to pilon.fasta [pilon] Writing NODE_3082_length_857_cov_18.726902:1-857 changes to pilon.changes [pilon] Writing updated NODE_3082_length_857_cov_18.726902_pilon to pilon.fasta [pilon] Writing NODE_3083_length_857_cov_13.845109:1-857 changes to pilon.changes [pilon] Writing updated NODE_3083_length_857_cov_13.845109_pilon to pilon.fasta [pilon] Writing NODE_3084_length_856_cov_24.216327:1-856 changes to pilon.changes [pilon] Writing updated NODE_3084_length_856_cov_24.216327_pilon to pilon.fasta [pilon] Writing NODE_3085_length_856_cov_16.540136:1-856 changes to pilon.changes [pilon] Writing updated NODE_3085_length_856_cov_16.540136_pilon to pilon.fasta [pilon] Writing NODE_3086_length_856_cov_15.710204:1-856 changes to pilon.changes [pilon] Writing updated NODE_3086_length_856_cov_15.710204_pilon to pilon.fasta [pilon] Writing NODE_3087_length_856_cov_4.389116:1-856 changes to pilon.changes [pilon] Writing updated NODE_3087_length_856_cov_4.389116_pilon to pilon.fasta [pilon] Writing NODE_3088_length_855_cov_27.440054:1-855 changes to pilon.changes [pilon] Writing updated NODE_3088_length_855_cov_27.440054_pilon to pilon.fasta [pilon] Writing NODE_3089_length_855_cov_17.989101:1-855 changes to pilon.changes [pilon] Writing updated NODE_3089_length_855_cov_17.989101_pilon to pilon.fasta [pilon] Writing NODE_3090_length_855_cov_2.564033:1-855 changes to pilon.changes [pilon] Writing updated NODE_3090_length_855_cov_2.564033_pilon to pilon.fasta [pilon] Writing NODE_3091_length_855_cov_1.363760:1-855 changes to pilon.changes [pilon] Writing updated NODE_3091_length_855_cov_1.363760_pilon to pilon.fasta [pilon] Writing NODE_3092_length_854_cov_24.631651:1-854 changes to pilon.changes [pilon] Writing updated NODE_3092_length_854_cov_24.631651_pilon to pilon.fasta [pilon] Writing NODE_3093_length_854_cov_13.452933:1-854 changes to pilon.changes [pilon] Writing updated NODE_3093_length_854_cov_13.452933_pilon to pilon.fasta [pilon] Writing NODE_3094_length_854_cov_12.603001:1-854 changes to pilon.changes [pilon] Writing updated NODE_3094_length_854_cov_12.603001_pilon to pilon.fasta [pilon] Writing NODE_3095_length_854_cov_4.357435:1-854 changes to pilon.changes [pilon] Writing updated NODE_3095_length_854_cov_4.357435_pilon to pilon.fasta [pilon] Writing NODE_3096_length_854_cov_2.848568:1-854 changes to pilon.changes [pilon] Writing updated NODE_3096_length_854_cov_2.848568_pilon to pilon.fasta [pilon] Writing NODE_3097_length_854_cov_2.023192:1-854 changes to pilon.changes [pilon] Writing updated NODE_3097_length_854_cov_2.023192_pilon to pilon.fasta [pilon] Writing NODE_3098_length_853_cov_28.606557:1-853 changes to pilon.changes [pilon] Writing updated NODE_3098_length_853_cov_28.606557_pilon to pilon.fasta [pilon] Writing NODE_3099_length_853_cov_28.355191:1-853 changes to pilon.changes [pilon] Writing updated NODE_3099_length_853_cov_28.355191_pilon to pilon.fasta [pilon] Writing NODE_3100_length_853_cov_24.046448:1-853 changes to pilon.changes [pilon] Writing updated NODE_3100_length_853_cov_24.046448_pilon to pilon.fasta [pilon] Writing NODE_3101_length_852_cov_25.097127:1-852 changes to pilon.changes [pilon] Writing updated NODE_3101_length_852_cov_25.097127_pilon to pilon.fasta [pilon] Writing NODE_3102_length_852_cov_18.393981:1-852 changes to pilon.changes [pilon] Writing updated NODE_3102_length_852_cov_18.393981_pilon to pilon.fasta [pilon] Writing NODE_3103_length_852_cov_1.738714:1-852 changes to pilon.changes [pilon] Writing updated NODE_3103_length_852_cov_1.738714_pilon to pilon.fasta [pilon] Writing NODE_3104_length_851_cov_2.908219:1-851 changes to pilon.changes [pilon] Writing updated NODE_3104_length_851_cov_2.908219_pilon to pilon.fasta [pilon] Writing NODE_3105_length_851_cov_1.926027:1-851 changes to pilon.changes [pilon] Writing updated NODE_3105_length_851_cov_1.926027_pilon to pilon.fasta [pilon] Writing NODE_3106_length_850_cov_46.352538:1-850 changes to pilon.changes [pilon] Writing updated NODE_3106_length_850_cov_46.352538_pilon to pilon.fasta [pilon] Writing NODE_3107_length_850_cov_37.316872:1-850 changes to pilon.changes [pilon] Writing updated NODE_3107_length_850_cov_37.316872_pilon to pilon.fasta [pilon] Writing NODE_3108_length_850_cov_13.677641:1-850 changes to pilon.changes [pilon] Writing updated NODE_3108_length_850_cov_13.677641_pilon to pilon.fasta [pilon] Writing NODE_3109_length_850_cov_7.768176:1-850 changes to pilon.changes [pilon] Writing updated NODE_3109_length_850_cov_7.768176_pilon to pilon.fasta [pilon] Writing NODE_3110_length_849_cov_36.368132:1-849 changes to pilon.changes [pilon] Writing updated NODE_3110_length_849_cov_36.368132_pilon to pilon.fasta [pilon] Writing NODE_3111_length_849_cov_17.717033:1-849 changes to pilon.changes [pilon] Writing updated NODE_3111_length_849_cov_17.717033_pilon to pilon.fasta [pilon] Writing NODE_3112_length_849_cov_15.620879:1-849 changes to pilon.changes [pilon] Writing updated NODE_3112_length_849_cov_15.620879_pilon to pilon.fasta [pilon] Writing NODE_3113_length_849_cov_15.083791:1-849 changes to pilon.changes [pilon] Writing updated NODE_3113_length_849_cov_15.083791_pilon to pilon.fasta [pilon] Writing NODE_3114_length_849_cov_9.972527:1-849 changes to pilon.changes [pilon] Writing updated NODE_3114_length_849_cov_9.972527_pilon to pilon.fasta [pilon] Writing NODE_3115_length_849_cov_1.574176:1-849 changes to pilon.changes [pilon] Writing updated NODE_3115_length_849_cov_1.574176_pilon to pilon.fasta [pilon] Writing NODE_3116_length_848_cov_33.485557:1-848 changes to pilon.changes [pilon] Writing updated NODE_3116_length_848_cov_33.485557_pilon to pilon.fasta [pilon] Writing NODE_3117_length_848_cov_24.755158:1-848 changes to pilon.changes [pilon] Writing updated NODE_3117_length_848_cov_24.755158_pilon to pilon.fasta [pilon] Writing NODE_3118_length_848_cov_17.452545:1-848 changes to pilon.changes [pilon] Writing updated NODE_3118_length_848_cov_17.452545_pilon to pilon.fasta [pilon] Writing NODE_3119_length_848_cov_12.590096:1-848 changes to pilon.changes [pilon] Writing updated NODE_3119_length_848_cov_12.590096_pilon to pilon.fasta [pilon] Writing NODE_3120_length_848_cov_7.324622:1-848 changes to pilon.changes [pilon] Writing updated NODE_3120_length_848_cov_7.324622_pilon to pilon.fasta [pilon] Writing NODE_3121_length_848_cov_5.158184:1-848 changes to pilon.changes [pilon] Writing updated NODE_3121_length_848_cov_5.158184_pilon to pilon.fasta [pilon] Writing NODE_3122_length_848_cov_4.701513:1-848 changes to pilon.changes [pilon] Writing updated NODE_3122_length_848_cov_4.701513_pilon to pilon.fasta [pilon] Writing NODE_3123_length_848_cov_2.507565:1-848 changes to pilon.changes [pilon] Writing updated NODE_3123_length_848_cov_2.507565_pilon to pilon.fasta [pilon] Writing NODE_3124_length_847_cov_29.517906:1-847 changes to pilon.changes [pilon] Writing updated NODE_3124_length_847_cov_29.517906_pilon to pilon.fasta [pilon] Writing NODE_3125_length_847_cov_19.712121:1-847 changes to pilon.changes [pilon] Writing updated NODE_3125_length_847_cov_19.712121_pilon to pilon.fasta [pilon] Writing NODE_3126_length_847_cov_6.643251:1-847 changes to pilon.changes [pilon] Writing updated NODE_3126_length_847_cov_6.643251_pilon to pilon.fasta [pilon] Writing NODE_3127_length_847_cov_1.603306:1-847 changes to pilon.changes [pilon] Writing updated NODE_3127_length_847_cov_1.603306_pilon to pilon.fasta [pilon] Writing NODE_3128_length_846_cov_45.834483:1-846 changes to pilon.changes [pilon] Writing updated NODE_3128_length_846_cov_45.834483_pilon to pilon.fasta [pilon] Writing NODE_3129_length_846_cov_18.368276:1-846 changes to pilon.changes [pilon] Writing updated NODE_3129_length_846_cov_18.368276_pilon to pilon.fasta [pilon] Writing NODE_3130_length_846_cov_9.908966:1-846 changes to pilon.changes [pilon] Writing updated NODE_3130_length_846_cov_9.908966_pilon to pilon.fasta [pilon] Writing NODE_3131_length_846_cov_1.234483:1-846 changes to pilon.changes [pilon] Writing updated NODE_3131_length_846_cov_1.234483_pilon to pilon.fasta [pilon] Writing NODE_3132_length_846_cov_1.217931:1-846 changes to pilon.changes [pilon] Writing updated NODE_3132_length_846_cov_1.217931_pilon to pilon.fasta [pilon] Writing NODE_3133_length_845_cov_24.366022:1-845 changes to pilon.changes [pilon] Writing updated NODE_3133_length_845_cov_24.366022_pilon to pilon.fasta [pilon] Writing NODE_3134_length_845_cov_13.023481:1-845 changes to pilon.changes [pilon] Writing updated NODE_3134_length_845_cov_13.023481_pilon to pilon.fasta [pilon] Writing NODE_3135_length_845_cov_11.435083:1-845 changes to pilon.changes [pilon] Writing updated NODE_3135_length_845_cov_11.435083_pilon to pilon.fasta [pilon] Writing NODE_3136_length_845_cov_1.715470:1-845 changes to pilon.changes [pilon] Writing updated NODE_3136_length_845_cov_1.715470_pilon to pilon.fasta [pilon] Writing NODE_3137_length_844_cov_13.163209:1-844 changes to pilon.changes [pilon] Writing updated NODE_3137_length_844_cov_13.163209_pilon to pilon.fasta [pilon] Writing NODE_3138_length_844_cov_4.540802:1-844 changes to pilon.changes [pilon] Writing updated NODE_3138_length_844_cov_4.540802_pilon to pilon.fasta [pilon] Writing NODE_3139_length_844_cov_3.744122:1-844 changes to pilon.changes [pilon] Writing updated NODE_3139_length_844_cov_3.744122_pilon to pilon.fasta [pilon] Writing NODE_3140_length_844_cov_3.134163:1-844 changes to pilon.changes [pilon] Writing updated NODE_3140_length_844_cov_3.134163_pilon to pilon.fasta [pilon] Writing NODE_3141_length_843_cov_21.217452:1-843 changes to pilon.changes [pilon] Writing updated NODE_3141_length_843_cov_21.217452_pilon to pilon.fasta [pilon] Writing NODE_3142_length_843_cov_14.426593:1-843 changes to pilon.changes [pilon] Writing updated NODE_3142_length_843_cov_14.426593_pilon to pilon.fasta [pilon] Writing NODE_3143_length_843_cov_12.908587:1-843 changes to pilon.changes [pilon] Writing updated NODE_3143_length_843_cov_12.908587_pilon to pilon.fasta [pilon] Writing NODE_3144_length_843_cov_3.228532:1-843 changes to pilon.changes [pilon] Writing updated NODE_3144_length_843_cov_3.228532_pilon to pilon.fasta [pilon] Writing NODE_3145_length_843_cov_1.574792:1-843 changes to pilon.changes [pilon] Writing updated NODE_3145_length_843_cov_1.574792_pilon to pilon.fasta [pilon] Writing NODE_3146_length_843_cov_1.080332:1-843 changes to pilon.changes [pilon] Writing updated NODE_3146_length_843_cov_1.080332_pilon to pilon.fasta [pilon] Writing NODE_3147_length_842_cov_26.424411:1-842 changes to pilon.changes [pilon] Writing updated NODE_3147_length_842_cov_26.424411_pilon to pilon.fasta [pilon] Writing NODE_3148_length_842_cov_19.228849:1-842 changes to pilon.changes [pilon] Writing updated NODE_3148_length_842_cov_19.228849_pilon to pilon.fasta [pilon] Writing NODE_3149_length_842_cov_15.375867:1-842 changes to pilon.changes [pilon] Writing updated NODE_3149_length_842_cov_15.375867_pilon to pilon.fasta [pilon] Writing NODE_3150_length_842_cov_6.828017:1-842 changes to pilon.changes [pilon] Writing updated NODE_3150_length_842_cov_6.828017_pilon to pilon.fasta [pilon] Writing NODE_3151_length_842_cov_5.228849:1-842 changes to pilon.changes [pilon] Writing updated NODE_3151_length_842_cov_5.228849_pilon to pilon.fasta [pilon] Writing NODE_3152_length_842_cov_4.226075:1-842 changes to pilon.changes [pilon] Writing updated NODE_3152_length_842_cov_4.226075_pilon to pilon.fasta [pilon] Writing NODE_3153_length_842_cov_1.969487:1-842 changes to pilon.changes [pilon] Writing updated NODE_3153_length_842_cov_1.969487_pilon to pilon.fasta [pilon] Writing NODE_3154_length_841_cov_32.319444:1-841 changes to pilon.changes [pilon] Writing updated NODE_3154_length_841_cov_32.319444_pilon to pilon.fasta [pilon] Writing NODE_3155_length_841_cov_26.233333:1-841 changes to pilon.changes [pilon] Writing updated NODE_3155_length_841_cov_26.233333_pilon to pilon.fasta [pilon] Writing NODE_3156_length_841_cov_18.462500:1-841 changes to pilon.changes [pilon] Writing updated NODE_3156_length_841_cov_18.462500_pilon to pilon.fasta [pilon] Writing NODE_3157_length_841_cov_13.108333:1-841 changes to pilon.changes [pilon] Writing updated NODE_3157_length_841_cov_13.108333_pilon to pilon.fasta [pilon] Writing NODE_3158_length_840_cov_25.393602:1-840 changes to pilon.changes [pilon] Writing updated NODE_3158_length_840_cov_25.393602_pilon to pilon.fasta [pilon] Writing NODE_3159_length_840_cov_20.968011:1-840 changes to pilon.changes [pilon] Writing updated NODE_3159_length_840_cov_20.968011_pilon to pilon.fasta [pilon] Writing NODE_3160_length_840_cov_3.346314:1-840 changes to pilon.changes [pilon] Writing updated NODE_3160_length_840_cov_3.346314_pilon to pilon.fasta [pilon] Writing NODE_3161_length_839_cov_56.227019:1-839 changes to pilon.changes [pilon] Writing updated NODE_3161_length_839_cov_56.227019_pilon to pilon.fasta [pilon] Writing NODE_3162_length_839_cov_12.267409:1-839 changes to pilon.changes [pilon] Writing updated NODE_3162_length_839_cov_12.267409_pilon to pilon.fasta [pilon] Writing NODE_3163_length_839_cov_9.082173:1-839 changes to pilon.changes [pilon] Writing updated NODE_3163_length_839_cov_9.082173_pilon to pilon.fasta [pilon] Writing NODE_3164_length_839_cov_3.189415:1-839 changes to pilon.changes [pilon] Writing updated NODE_3164_length_839_cov_3.189415_pilon to pilon.fasta [pilon] Writing NODE_3165_length_839_cov_2.314763:1-839 changes to pilon.changes [pilon] Writing updated NODE_3165_length_839_cov_2.314763_pilon to pilon.fasta [pilon] Writing NODE_3166_length_839_cov_1.788301:1-839 changes to pilon.changes [pilon] Writing updated NODE_3166_length_839_cov_1.788301_pilon to pilon.fasta [pilon] Writing NODE_3167_length_838_cov_20.970711:1-838 changes to pilon.changes [pilon] Writing updated NODE_3167_length_838_cov_20.970711_pilon to pilon.fasta [pilon] Writing NODE_3168_length_838_cov_12.348675:1-838 changes to pilon.changes [pilon] Writing updated NODE_3168_length_838_cov_12.348675_pilon to pilon.fasta [pilon] Writing NODE_3169_length_837_cov_34.117318:1-837 changes to pilon.changes [pilon] Writing updated NODE_3169_length_837_cov_34.117318_pilon to pilon.fasta [pilon] Writing NODE_3170_length_837_cov_28.398045:1-837 changes to pilon.changes [pilon] Writing updated NODE_3170_length_837_cov_28.398045_pilon to pilon.fasta [pilon] Writing NODE_3171_length_837_cov_10.791899:1-837 changes to pilon.changes [pilon] Writing updated NODE_3171_length_837_cov_10.791899_pilon to pilon.fasta [pilon] Writing NODE_3172_length_837_cov_1.326816:1-837 changes to pilon.changes [pilon] Writing updated NODE_3172_length_837_cov_1.326816_pilon to pilon.fasta [pilon] Writing NODE_3173_length_836_cov_20.616783:1-836 changes to pilon.changes [pilon] Writing updated NODE_3173_length_836_cov_20.616783_pilon to pilon.fasta [pilon] Writing NODE_3174_length_836_cov_19.130070:1-836 changes to pilon.changes [pilon] Writing updated NODE_3174_length_836_cov_19.130070_pilon to pilon.fasta [pilon] Writing NODE_3175_length_836_cov_12.406993:1-836 changes to pilon.changes [pilon] Writing updated NODE_3175_length_836_cov_12.406993_pilon to pilon.fasta [pilon] Writing NODE_3176_length_835_cov_20.299720:1-835 changes to pilon.changes [pilon] Writing updated NODE_3176_length_835_cov_20.299720_pilon to pilon.fasta [pilon] Writing NODE_3177_length_835_cov_17.053221:1-835 changes to pilon.changes [pilon] Writing updated NODE_3177_length_835_cov_17.053221_pilon to pilon.fasta [pilon] Writing NODE_3178_length_835_cov_15.756303:1-835 changes to pilon.changes [pilon] Writing updated NODE_3178_length_835_cov_15.756303_pilon to pilon.fasta [pilon] Writing NODE_3179_length_835_cov_6.263305:1-835 changes to pilon.changes [pilon] Writing updated NODE_3179_length_835_cov_6.263305_pilon to pilon.fasta [pilon] Writing NODE_3180_length_835_cov_5.985994:1-835 changes to pilon.changes [pilon] Writing updated NODE_3180_length_835_cov_5.985994_pilon to pilon.fasta [pilon] Writing NODE_3181_length_835_cov_2.592437:1-835 changes to pilon.changes [pilon] Writing updated NODE_3181_length_835_cov_2.592437_pilon to pilon.fasta [pilon] Writing NODE_3182_length_835_cov_1.326331:1-835 changes to pilon.changes [pilon] Writing updated NODE_3182_length_835_cov_1.326331_pilon to pilon.fasta [pilon] Writing NODE_3183_length_835_cov_1.266106:1-835 changes to pilon.changes [pilon] Writing updated NODE_3183_length_835_cov_1.266106_pilon to pilon.fasta [pilon] Writing NODE_3184_length_835_cov_0.913165:1-835 changes to pilon.changes [pilon] Writing updated NODE_3184_length_835_cov_0.913165_pilon to pilon.fasta [pilon] Writing NODE_3185_length_834_cov_18.903226:1-834 changes to pilon.changes [pilon] Writing updated NODE_3185_length_834_cov_18.903226_pilon to pilon.fasta [pilon] Writing NODE_3186_length_834_cov_7.713885:1-834 changes to pilon.changes [pilon] Writing updated NODE_3186_length_834_cov_7.713885_pilon to pilon.fasta [pilon] Writing NODE_3187_length_834_cov_7.263675:1-834 changes to pilon.changes [pilon] Writing updated NODE_3187_length_834_cov_7.263675_pilon to pilon.fasta [pilon] Writing NODE_3188_length_834_cov_3.373072:1-834 changes to pilon.changes [pilon] Writing updated NODE_3188_length_834_cov_3.373072_pilon to pilon.fasta [pilon] Writing NODE_3189_length_834_cov_3.349229:1-834 changes to pilon.changes [pilon] Writing updated NODE_3189_length_834_cov_3.349229_pilon to pilon.fasta [pilon] Writing NODE_3190_length_834_cov_3.001403:1-834 changes to pilon.changes [pilon] Writing updated NODE_3190_length_834_cov_3.001403_pilon to pilon.fasta [pilon] Writing NODE_3191_length_834_cov_1.476858:1-834 changes to pilon.changes [pilon] Writing updated NODE_3191_length_834_cov_1.476858_pilon to pilon.fasta [pilon] Writing NODE_3192_length_834_cov_1.433380:1-834 changes to pilon.changes [pilon] Writing updated NODE_3192_length_834_cov_1.433380_pilon to pilon.fasta [pilon] Writing NODE_3193_length_834_cov_0.516129:1-834 changes to pilon.changes [pilon] Writing updated NODE_3193_length_834_cov_0.516129_pilon to pilon.fasta [pilon] Writing NODE_3194_length_833_cov_43.581461:1-833 changes to pilon.changes [pilon] Writing updated NODE_3194_length_833_cov_43.581461_pilon to pilon.fasta [pilon] Writing NODE_3195_length_833_cov_30.832865:1-833 changes to pilon.changes [pilon] Writing updated NODE_3195_length_833_cov_30.832865_pilon to pilon.fasta [pilon] Writing NODE_3196_length_833_cov_17.321629:1-833 changes to pilon.changes [pilon] Writing updated NODE_3196_length_833_cov_17.321629_pilon to pilon.fasta [pilon] Writing NODE_3197_length_833_cov_16.939607:1-833 changes to pilon.changes [pilon] Writing updated NODE_3197_length_833_cov_16.939607_pilon to pilon.fasta [pilon] Writing NODE_3198_length_833_cov_1.403090:1-833 changes to pilon.changes [pilon] Writing updated NODE_3198_length_833_cov_1.403090_pilon to pilon.fasta [pilon] Writing NODE_3199_length_833_cov_1.188202:1-833 changes to pilon.changes [pilon] Writing updated NODE_3199_length_833_cov_1.188202_pilon to pilon.fasta [pilon] Writing NODE_3200_length_832_cov_59.766526:1-832 changes to pilon.changes [pilon] Writing updated NODE_3200_length_832_cov_59.766526_pilon to pilon.fasta [pilon] Writing NODE_3201_length_832_cov_41.950774:1-832 changes to pilon.changes [pilon] Writing updated NODE_3201_length_832_cov_41.950774_pilon to pilon.fasta [pilon] Writing NODE_3202_length_832_cov_24.625879:1-832 changes to pilon.changes [pilon] Writing updated NODE_3202_length_832_cov_24.625879_pilon to pilon.fasta [pilon] Writing NODE_3203_length_832_cov_22.230661:1-832 changes to pilon.changes [pilon] Writing updated NODE_3203_length_832_cov_22.230661_pilon to pilon.fasta [pilon] Writing NODE_3204_length_832_cov_19.461322:1-832 changes to pilon.changes [pilon] Writing updated NODE_3204_length_832_cov_19.461322_pilon to pilon.fasta [pilon] Writing NODE_3205_length_832_cov_13.957806:1-832 changes to pilon.changes [pilon] Writing updated NODE_3205_length_832_cov_13.957806_pilon to pilon.fasta [pilon] Writing NODE_3206_length_832_cov_11.988748:1-832 changes to pilon.changes [pilon] Writing updated NODE_3206_length_832_cov_11.988748_pilon to pilon.fasta [pilon] Writing NODE_3207_length_832_cov_3.295359:1-832 changes to pilon.changes [pilon] Writing updated NODE_3207_length_832_cov_3.295359_pilon to pilon.fasta [pilon] Writing NODE_3208_length_832_cov_1.613221:1-832 changes to pilon.changes [pilon] Writing updated NODE_3208_length_832_cov_1.613221_pilon to pilon.fasta [pilon] Writing NODE_3209_length_831_cov_26.161972:1-831 changes to pilon.changes [pilon] Writing updated NODE_3209_length_831_cov_26.161972_pilon to pilon.fasta [pilon] Writing NODE_3210_length_831_cov_20.261972:1-831 changes to pilon.changes [pilon] Writing updated NODE_3210_length_831_cov_20.261972_pilon to pilon.fasta [pilon] Writing NODE_3211_length_831_cov_19.821127:1-831 changes to pilon.changes [pilon] Writing updated NODE_3211_length_831_cov_19.821127_pilon to pilon.fasta [pilon] Writing NODE_3212_length_831_cov_18.774648:1-831 changes to pilon.changes [pilon] Writing updated NODE_3212_length_831_cov_18.774648_pilon to pilon.fasta [pilon] Writing NODE_3213_length_831_cov_17.946479:1-831 changes to pilon.changes [pilon] Writing updated NODE_3213_length_831_cov_17.946479_pilon to pilon.fasta [pilon] Writing NODE_3214_length_831_cov_3.767606:1-831 changes to pilon.changes [pilon] Writing updated NODE_3214_length_831_cov_3.767606_pilon to pilon.fasta [pilon] Writing NODE_3215_length_831_cov_2.456338:1-831 changes to pilon.changes [pilon] Writing updated NODE_3215_length_831_cov_2.456338_pilon to pilon.fasta [pilon] Writing NODE_3216_length_830_cov_35.857546:1-830 changes to pilon.changes [pilon] Writing updated NODE_3216_length_830_cov_35.857546_pilon to pilon.fasta [pilon] Writing NODE_3217_length_830_cov_27.475317:1-830 changes to pilon.changes [pilon] Writing updated NODE_3217_length_830_cov_27.475317_pilon to pilon.fasta [pilon] Writing NODE_3218_length_830_cov_25.392102:1-830 changes to pilon.changes [pilon] Writing updated NODE_3218_length_830_cov_25.392102_pilon to pilon.fasta [pilon] Writing NODE_3219_length_830_cov_23.586742:1-830 changes to pilon.changes [pilon] Writing updated NODE_3219_length_830_cov_23.586742_pilon to pilon.fasta [pilon] Writing NODE_3220_length_830_cov_17.971791:1-830 changes to pilon.changes [pilon] Writing updated NODE_3220_length_830_cov_17.971791_pilon to pilon.fasta [pilon] Writing NODE_3221_length_830_cov_14.981664:1-830 changes to pilon.changes [pilon] Writing updated NODE_3221_length_830_cov_14.981664_pilon to pilon.fasta [pilon] Writing NODE_3222_length_830_cov_14.980254:1-830 changes to pilon.changes [pilon] Writing updated NODE_3222_length_830_cov_14.980254_pilon to pilon.fasta [pilon] Writing NODE_3223_length_830_cov_5.190409:1-830 changes to pilon.changes [pilon] Writing updated NODE_3223_length_830_cov_5.190409_pilon to pilon.fasta [pilon] Writing NODE_3224_length_830_cov_2.963329:1-830 changes to pilon.changes [pilon] Writing updated NODE_3224_length_830_cov_2.963329_pilon to pilon.fasta [pilon] Writing NODE_3225_length_830_cov_1.638928:1-830 changes to pilon.changes [pilon] Writing updated NODE_3225_length_830_cov_1.638928_pilon to pilon.fasta [pilon] Writing NODE_3226_length_829_cov_30.533898:1-829 changes to pilon.changes [pilon] Writing updated NODE_3226_length_829_cov_30.533898_pilon to pilon.fasta [pilon] Writing NODE_3227_length_829_cov_19.241525:1-829 changes to pilon.changes [pilon] Writing updated NODE_3227_length_829_cov_19.241525_pilon to pilon.fasta [pilon] Writing NODE_3228_length_829_cov_12.984463:1-829 changes to pilon.changes [pilon] Writing updated NODE_3228_length_829_cov_12.984463_pilon to pilon.fasta [pilon] Writing NODE_3229_length_829_cov_4.172316:1-829 changes to pilon.changes [pilon] Writing updated NODE_3229_length_829_cov_4.172316_pilon to pilon.fasta [pilon] Writing NODE_3230_length_829_cov_3.008475:1-829 changes to pilon.changes [pilon] Writing updated NODE_3230_length_829_cov_3.008475_pilon to pilon.fasta [pilon] Writing NODE_3231_length_829_cov_1.923729:1-829 changes to pilon.changes [pilon] Writing updated NODE_3231_length_829_cov_1.923729_pilon to pilon.fasta [pilon] Writing NODE_3232_length_828_cov_0.864215:1-828 changes to pilon.changes [pilon] Writing updated NODE_3232_length_828_cov_0.864215_pilon to pilon.fasta [pilon] Writing NODE_3233_length_828_cov_0.694484:1-828 changes to pilon.changes [pilon] Writing updated NODE_3233_length_828_cov_0.694484_pilon to pilon.fasta [pilon] Writing NODE_3234_length_827_cov_19.631728:1-827 changes to pilon.changes [pilon] Writing updated NODE_3234_length_827_cov_19.631728_pilon to pilon.fasta [pilon] Writing NODE_3235_length_827_cov_16.133144:1-827 changes to pilon.changes [pilon] Writing updated NODE_3235_length_827_cov_16.133144_pilon to pilon.fasta [pilon] Writing NODE_3236_length_827_cov_14.793201:1-827 changes to pilon.changes [pilon] Writing updated NODE_3236_length_827_cov_14.793201_pilon to pilon.fasta [pilon] Writing NODE_3237_length_827_cov_11.664306:1-827 changes to pilon.changes [pilon] Writing updated NODE_3237_length_827_cov_11.664306_pilon to pilon.fasta [pilon] Writing NODE_3238_length_827_cov_2.015581:1-827 changes to pilon.changes [pilon] Writing updated NODE_3238_length_827_cov_2.015581_pilon to pilon.fasta [pilon] Writing NODE_3239_length_826_cov_32.791489:1-826 changes to pilon.changes [pilon] Writing updated NODE_3239_length_826_cov_32.791489_pilon to pilon.fasta [pilon] Writing NODE_3240_length_826_cov_19.985816:1-826 changes to pilon.changes [pilon] Writing updated NODE_3240_length_826_cov_19.985816_pilon to pilon.fasta [pilon] Writing NODE_3241_length_826_cov_2.431206:1-826 changes to pilon.changes [pilon] Writing updated NODE_3241_length_826_cov_2.431206_pilon to pilon.fasta [pilon] Writing NODE_3242_length_826_cov_1.984397:1-826 changes to pilon.changes [pilon] Writing updated NODE_3242_length_826_cov_1.984397_pilon to pilon.fasta [pilon] Writing NODE_3243_length_826_cov_1.924823:1-826 changes to pilon.changes [pilon] Writing updated NODE_3243_length_826_cov_1.924823_pilon to pilon.fasta [pilon] Writing NODE_3244_length_825_cov_23.132102:1-825 changes to pilon.changes [pilon] Writing updated NODE_3244_length_825_cov_23.132102_pilon to pilon.fasta [pilon] Writing NODE_3245_length_825_cov_21.883523:1-825 changes to pilon.changes [pilon] Writing updated NODE_3245_length_825_cov_21.883523_pilon to pilon.fasta [pilon] Writing NODE_3246_length_825_cov_10.517045:1-825 changes to pilon.changes [pilon] Writing updated NODE_3246_length_825_cov_10.517045_pilon to pilon.fasta [pilon] Writing NODE_3247_length_824_cov_48.506401:1-824 changes to pilon.changes [pilon] Writing updated NODE_3247_length_824_cov_48.506401_pilon to pilon.fasta [pilon] Writing NODE_3248_length_824_cov_21.716927:1-824 changes to pilon.changes [pilon] Writing updated NODE_3248_length_824_cov_21.716927_pilon to pilon.fasta [pilon] Writing NODE_3249_length_824_cov_14.984353:1-824 changes to pilon.changes [pilon] Writing updated NODE_3249_length_824_cov_14.984353_pilon to pilon.fasta [pilon] Writing NODE_3250_length_824_cov_7.320057:1-824 changes to pilon.changes [pilon] Writing updated NODE_3250_length_824_cov_7.320057_pilon to pilon.fasta [pilon] Writing NODE_3251_length_824_cov_1.580370:1-824 changes to pilon.changes [pilon] Writing updated NODE_3251_length_824_cov_1.580370_pilon to pilon.fasta [pilon] Writing NODE_3252_length_824_cov_1.018492:1-824 changes to pilon.changes [pilon] Writing updated NODE_3252_length_824_cov_1.018492_pilon to pilon.fasta [pilon] Writing NODE_3253_length_823_cov_25.700855:1-823 changes to pilon.changes [pilon] Writing updated NODE_3253_length_823_cov_25.700855_pilon to pilon.fasta [pilon] Writing NODE_3254_length_823_cov_20.924501:1-823 changes to pilon.changes [pilon] Writing updated NODE_3254_length_823_cov_20.924501_pilon to pilon.fasta [pilon] Writing NODE_3255_length_823_cov_3.160969:1-823 changes to pilon.changes [pilon] Writing updated NODE_3255_length_823_cov_3.160969_pilon to pilon.fasta [pilon] Writing NODE_3256_length_823_cov_2.726496:1-823 changes to pilon.changes [pilon] Writing updated NODE_3256_length_823_cov_2.726496_pilon to pilon.fasta [pilon] Writing NODE_3257_length_822_cov_24.312411:1-822 changes to pilon.changes [pilon] Writing updated NODE_3257_length_822_cov_24.312411_pilon to pilon.fasta [pilon] Writing NODE_3258_length_822_cov_21.231098:1-822 changes to pilon.changes [pilon] Writing updated NODE_3258_length_822_cov_21.231098_pilon to pilon.fasta [pilon] Writing NODE_3259_length_822_cov_18.814551:1-822 changes to pilon.changes [pilon] Writing updated NODE_3259_length_822_cov_18.814551_pilon to pilon.fasta [pilon] Writing NODE_3260_length_822_cov_18.763195:1-822 changes to pilon.changes [pilon] Writing updated NODE_3260_length_822_cov_18.763195_pilon to pilon.fasta [pilon] Writing NODE_3261_length_822_cov_18.315264:1-822 changes to pilon.changes [pilon] Writing updated NODE_3261_length_822_cov_18.315264_pilon to pilon.fasta [pilon] Writing NODE_3262_length_821_cov_21.287143:1-821 changes to pilon.changes [pilon] Writing updated NODE_3262_length_821_cov_21.287143_pilon to pilon.fasta [pilon] Writing NODE_3263_length_821_cov_12.252857:1-821 changes to pilon.changes [pilon] Writing updated NODE_3263_length_821_cov_12.252857_pilon to pilon.fasta [pilon] Writing NODE_3264_length_821_cov_3.017143:1-821 changes to pilon.changes [pilon] Writing updated NODE_3264_length_821_cov_3.017143_pilon to pilon.fasta [pilon] Writing NODE_3265_length_820_cov_19.638054:1-820 changes to pilon.changes [pilon] Writing updated NODE_3265_length_820_cov_19.638054_pilon to pilon.fasta [pilon] Writing NODE_3266_length_820_cov_15.284692:1-820 changes to pilon.changes [pilon] Writing updated NODE_3266_length_820_cov_15.284692_pilon to pilon.fasta [pilon] Writing NODE_3267_length_820_cov_14.653791:1-820 changes to pilon.changes [pilon] Writing updated NODE_3267_length_820_cov_14.653791_pilon to pilon.fasta [pilon] Writing NODE_3268_length_820_cov_12.153076:1-820 changes to pilon.changes [pilon] Writing updated NODE_3268_length_820_cov_12.153076_pilon to pilon.fasta [pilon] Writing NODE_3269_length_820_cov_4.542203:1-820 changes to pilon.changes [pilon] Writing updated NODE_3269_length_820_cov_4.542203_pilon to pilon.fasta [pilon] Writing NODE_3270_length_820_cov_1.494993:1-820 changes to pilon.changes [pilon] Writing updated NODE_3270_length_820_cov_1.494993_pilon to pilon.fasta [pilon] Writing NODE_3271_length_819_cov_37.889685:1-819 changes to pilon.changes [pilon] Writing updated NODE_3271_length_819_cov_37.889685_pilon to pilon.fasta [pilon] Writing NODE_3272_length_819_cov_17.005731:1-819 changes to pilon.changes [pilon] Writing updated NODE_3272_length_819_cov_17.005731_pilon to pilon.fasta [pilon] Writing NODE_3273_length_819_cov_15.332378:1-819 changes to pilon.changes [pilon] Writing updated NODE_3273_length_819_cov_15.332378_pilon to pilon.fasta [pilon] Writing NODE_3274_length_819_cov_11.014327:1-819 changes to pilon.changes [pilon] Writing updated NODE_3274_length_819_cov_11.014327_pilon to pilon.fasta [pilon] Writing NODE_3275_length_819_cov_3.223496:1-819 changes to pilon.changes [pilon] Writing updated NODE_3275_length_819_cov_3.223496_pilon to pilon.fasta [pilon] Writing NODE_3276_length_819_cov_2.601719:1-819 changes to pilon.changes [pilon] Writing updated NODE_3276_length_819_cov_2.601719_pilon to pilon.fasta [pilon] Writing NODE_3277_length_819_cov_2.107450:1-819 changes to pilon.changes [pilon] Writing updated NODE_3277_length_819_cov_2.107450_pilon to pilon.fasta [pilon] Writing NODE_3278_length_819_cov_1.497135:1-819 changes to pilon.changes [pilon] Writing updated NODE_3278_length_819_cov_1.497135_pilon to pilon.fasta [pilon] Writing NODE_3279_length_818_cov_21.416069:1-818 changes to pilon.changes [pilon] Writing updated NODE_3279_length_818_cov_21.416069_pilon to pilon.fasta [pilon] Writing NODE_3280_length_818_cov_8.863702:1-818 changes to pilon.changes [pilon] Writing updated NODE_3280_length_818_cov_8.863702_pilon to pilon.fasta [pilon] Writing NODE_3281_length_818_cov_4.219512:1-818 changes to pilon.changes [pilon] Writing updated NODE_3281_length_818_cov_4.219512_pilon to pilon.fasta [pilon] Writing NODE_3282_length_818_cov_2.220947:1-818 changes to pilon.changes [pilon] Writing updated NODE_3282_length_818_cov_2.220947_pilon to pilon.fasta [pilon] Writing NODE_3283_length_818_cov_0.632712:1-818 changes to pilon.changes [pilon] Writing updated NODE_3283_length_818_cov_0.632712_pilon to pilon.fasta [pilon] Writing NODE_3284_length_817_cov_30.543103:1-817 changes to pilon.changes [pilon] Writing updated NODE_3284_length_817_cov_30.543103_pilon to pilon.fasta [pilon] Writing NODE_3285_length_817_cov_16.239943:1-817 changes to pilon.changes [pilon] Writing updated NODE_3285_length_817_cov_16.239943_pilon to pilon.fasta [pilon] Writing NODE_3286_length_817_cov_7.708333:1-817 changes to pilon.changes [pilon] Writing updated NODE_3286_length_817_cov_7.708333_pilon to pilon.fasta [pilon] Writing NODE_3287_length_817_cov_6.008621:1-817 changes to pilon.changes [pilon] Writing updated NODE_3287_length_817_cov_6.008621_pilon to pilon.fasta [pilon] Writing NODE_3288_length_817_cov_3.382184:1-817 changes to pilon.changes [pilon] Writing updated NODE_3288_length_817_cov_3.382184_pilon to pilon.fasta [pilon] Writing NODE_3289_length_817_cov_2.840517:1-817 changes to pilon.changes [pilon] Writing updated NODE_3289_length_817_cov_2.840517_pilon to pilon.fasta [pilon] Writing NODE_3290_length_816_cov_27.282014:1-816 changes to pilon.changes [pilon] Writing updated NODE_3290_length_816_cov_27.282014_pilon to pilon.fasta [pilon] Writing NODE_3291_length_816_cov_17.804317:1-816 changes to pilon.changes [pilon] Writing updated NODE_3291_length_816_cov_17.804317_pilon to pilon.fasta [pilon] Writing NODE_3292_length_816_cov_17.519424:1-816 changes to pilon.changes [pilon] Writing updated NODE_3292_length_816_cov_17.519424_pilon to pilon.fasta [pilon] Writing NODE_3293_length_816_cov_9.640288:1-816 changes to pilon.changes [pilon] Writing updated NODE_3293_length_816_cov_9.640288_pilon to pilon.fasta [pilon] Writing NODE_3294_length_815_cov_31.688761:1-815 changes to pilon.changes [pilon] Writing updated NODE_3294_length_815_cov_31.688761_pilon to pilon.fasta [pilon] Writing NODE_3295_length_815_cov_22.504323:1-815 changes to pilon.changes [pilon] Writing updated NODE_3295_length_815_cov_22.504323_pilon to pilon.fasta [pilon] Writing NODE_3296_length_815_cov_21.374640:1-815 changes to pilon.changes [pilon] Writing updated NODE_3296_length_815_cov_21.374640_pilon to pilon.fasta [pilon] Writing NODE_3297_length_815_cov_21.345821:1-815 changes to pilon.changes [pilon] Writing updated NODE_3297_length_815_cov_21.345821_pilon to pilon.fasta [pilon] Writing NODE_3298_length_815_cov_16.397695:1-815 changes to pilon.changes [pilon] Writing updated NODE_3298_length_815_cov_16.397695_pilon to pilon.fasta [pilon] Writing NODE_3299_length_815_cov_14.926513:1-815 changes to pilon.changes [pilon] Writing updated NODE_3299_length_815_cov_14.926513_pilon to pilon.fasta [pilon] Writing NODE_3300_length_815_cov_8.087896:1-815 changes to pilon.changes [pilon] Writing updated NODE_3300_length_815_cov_8.087896_pilon to pilon.fasta [pilon] Writing NODE_3301_length_815_cov_2.354467:1-815 changes to pilon.changes [pilon] Writing updated NODE_3301_length_815_cov_2.354467_pilon to pilon.fasta [pilon] Writing NODE_3302_length_815_cov_2.102305:1-815 changes to pilon.changes [pilon] Writing updated NODE_3302_length_815_cov_2.102305_pilon to pilon.fasta [pilon] Writing NODE_3303_length_815_cov_1.406340:1-815 changes to pilon.changes [pilon] Writing updated NODE_3303_length_815_cov_1.406340_pilon to pilon.fasta [pilon] Writing NODE_3304_length_815_cov_1.067723:1-815 changes to pilon.changes [pilon] Writing updated NODE_3304_length_815_cov_1.067723_pilon to pilon.fasta [pilon] Writing NODE_3305_length_814_cov_20.174603:1-814 changes to pilon.changes [pilon] Writing updated NODE_3305_length_814_cov_20.174603_pilon to pilon.fasta [pilon] Writing NODE_3306_length_814_cov_16.910534:1-814 changes to pilon.changes [pilon] Writing updated NODE_3306_length_814_cov_16.910534_pilon to pilon.fasta [pilon] Writing NODE_3307_length_814_cov_7.030303:1-814 changes to pilon.changes [pilon] Writing updated NODE_3307_length_814_cov_7.030303_pilon to pilon.fasta [pilon] Writing NODE_3308_length_814_cov_1.121212:1-814 changes to pilon.changes [pilon] Writing updated NODE_3308_length_814_cov_1.121212_pilon to pilon.fasta [pilon] Writing NODE_3309_length_813_cov_18.865607:1-813 changes to pilon.changes [pilon] Writing updated NODE_3309_length_813_cov_18.865607_pilon to pilon.fasta [pilon] Writing NODE_3310_length_813_cov_15.495665:1-813 changes to pilon.changes [pilon] Writing updated NODE_3310_length_813_cov_15.495665_pilon to pilon.fasta [pilon] Writing NODE_3311_length_813_cov_12.950867:1-813 changes to pilon.changes [pilon] Writing updated NODE_3311_length_813_cov_12.950867_pilon to pilon.fasta [pilon] Writing NODE_3312_length_813_cov_2.578035:1-813 changes to pilon.changes [pilon] Writing updated NODE_3312_length_813_cov_2.578035_pilon to pilon.fasta [pilon] Writing NODE_3313_length_813_cov_2.476879:1-813 changes to pilon.changes [pilon] Writing updated NODE_3313_length_813_cov_2.476879_pilon to pilon.fasta [pilon] Writing NODE_3314_length_813_cov_1.406069:1-813 changes to pilon.changes [pilon] Writing updated NODE_3314_length_813_cov_1.406069_pilon to pilon.fasta [pilon] Writing NODE_3315_length_812_cov_44.063676:1-812 changes to pilon.changes [pilon] Writing updated NODE_3315_length_812_cov_44.063676_pilon to pilon.fasta [pilon] Writing NODE_3316_length_812_cov_25.328509:1-812 changes to pilon.changes [pilon] Writing updated NODE_3316_length_812_cov_25.328509_pilon to pilon.fasta [pilon] Writing NODE_3317_length_812_cov_8.260492:1-812 changes to pilon.changes [pilon] Writing updated NODE_3317_length_812_cov_8.260492_pilon to pilon.fasta [pilon] Writing NODE_3318_length_812_cov_3.518090:1-812 changes to pilon.changes [pilon] Writing updated NODE_3318_length_812_cov_3.518090_pilon to pilon.fasta [pilon] Writing NODE_3319_length_812_cov_2.800289:1-812 changes to pilon.changes [pilon] Writing updated NODE_3319_length_812_cov_2.800289_pilon to pilon.fasta [pilon] Writing NODE_3320_length_812_cov_1.344428:1-812 changes to pilon.changes [pilon] Writing updated NODE_3320_length_812_cov_1.344428_pilon to pilon.fasta [pilon] Writing NODE_3321_length_812_cov_1.017366:1-812 changes to pilon.changes [pilon] Writing updated NODE_3321_length_812_cov_1.017366_pilon to pilon.fasta [pilon] Writing NODE_3322_length_811_cov_40.813043:1-811 changes to pilon.changes [pilon] Writing updated NODE_3322_length_811_cov_40.813043_pilon to pilon.fasta [pilon] Writing NODE_3323_length_811_cov_16.889855:1-811 changes to pilon.changes [pilon] Writing updated NODE_3323_length_811_cov_16.889855_pilon to pilon.fasta [pilon] Writing NODE_3324_length_811_cov_15.708696:1-811 changes to pilon.changes [pilon] Writing updated NODE_3324_length_811_cov_15.708696_pilon to pilon.fasta [pilon] Writing NODE_3325_length_811_cov_5.747826:1-811 changes to pilon.changes [pilon] Writing updated NODE_3325_length_811_cov_5.747826_pilon to pilon.fasta [pilon] Writing NODE_3326_length_811_cov_2.653623:1-811 changes to pilon.changes [pilon] Writing updated NODE_3326_length_811_cov_2.653623_pilon to pilon.fasta [pilon] Writing NODE_3327_length_811_cov_1.566667:1-811 changes to pilon.changes [pilon] Writing updated NODE_3327_length_811_cov_1.566667_pilon to pilon.fasta [pilon] Writing NODE_3328_length_810_cov_31.859216:1-810 changes to pilon.changes [pilon] Writing updated NODE_3328_length_810_cov_31.859216_pilon to pilon.fasta [pilon] Writing NODE_3329_length_810_cov_29.738752:1-810 changes to pilon.changes [pilon] Writing updated NODE_3329_length_810_cov_29.738752_pilon to pilon.fasta [pilon] Writing NODE_3330_length_810_cov_11.791001:1-810 changes to pilon.changes [pilon] Writing updated NODE_3330_length_810_cov_11.791001_pilon to pilon.fasta [pilon] Writing NODE_3331_length_810_cov_8.510885:1-810 changes to pilon.changes [pilon] Writing updated NODE_3331_length_810_cov_8.510885_pilon to pilon.fasta [pilon] Writing NODE_3332_length_810_cov_1.119013:1-810 changes to pilon.changes [pilon] Writing updated NODE_3332_length_810_cov_1.119013_pilon to pilon.fasta [pilon] Writing NODE_3333_length_809_cov_22.156977:1-809 changes to pilon.changes [pilon] Writing updated NODE_3333_length_809_cov_22.156977_pilon to pilon.fasta [pilon] Writing NODE_3334_length_808_cov_22.911208:1-808 changes to pilon.changes [pilon] Writing updated NODE_3334_length_808_cov_22.911208_pilon to pilon.fasta [pilon] Writing NODE_3335_length_808_cov_1.901019:1-808 changes to pilon.changes [pilon] Writing updated NODE_3335_length_808_cov_1.901019_pilon to pilon.fasta [pilon] Writing NODE_3336_length_807_cov_29.827988:1-807 changes to pilon.changes [pilon] Writing updated NODE_3336_length_807_cov_29.827988_pilon to pilon.fasta [pilon] Writing NODE_3337_length_807_cov_23.255102:1-807 changes to pilon.changes [pilon] Writing updated NODE_3337_length_807_cov_23.255102_pilon to pilon.fasta [pilon] Writing NODE_3338_length_807_cov_17.797376:1-807 changes to pilon.changes [pilon] Writing updated NODE_3338_length_807_cov_17.797376_pilon to pilon.fasta [pilon] Writing NODE_3339_length_807_cov_16.701166:1-807 changes to pilon.changes [pilon] Writing updated NODE_3339_length_807_cov_16.701166_pilon to pilon.fasta [pilon] Writing NODE_3340_length_807_cov_13.412536:1-807 changes to pilon.changes [pilon] Writing updated NODE_3340_length_807_cov_13.412536_pilon to pilon.fasta [pilon] Writing NODE_3341_length_807_cov_2.486880:1-807 changes to pilon.changes [pilon] Writing updated NODE_3341_length_807_cov_2.486880_pilon to pilon.fasta [pilon] Writing NODE_3342_length_806_cov_50.366423:1-806 changes to pilon.changes [pilon] Writing updated NODE_3342_length_806_cov_50.366423_pilon to pilon.fasta [pilon] Writing NODE_3343_length_806_cov_49.080292:1-806 changes to pilon.changes [pilon] Writing updated NODE_3343_length_806_cov_49.080292_pilon to pilon.fasta [pilon] Writing NODE_3344_length_806_cov_21.956204:1-806 changes to pilon.changes [pilon] Writing updated NODE_3344_length_806_cov_21.956204_pilon to pilon.fasta [pilon] Writing NODE_3345_length_806_cov_18.570803:1-806 changes to pilon.changes [pilon] Writing updated NODE_3345_length_806_cov_18.570803_pilon to pilon.fasta [pilon] Writing NODE_3346_length_806_cov_11.843796:1-806 changes to pilon.changes [pilon] Writing updated NODE_3346_length_806_cov_11.843796_pilon to pilon.fasta [pilon] Writing NODE_3347_length_806_cov_6.997080:1-806 changes to pilon.changes [pilon] Writing updated NODE_3347_length_806_cov_6.997080_pilon to pilon.fasta [pilon] Writing NODE_3348_length_806_cov_2.900730:1-806 changes to pilon.changes [pilon] Writing updated NODE_3348_length_806_cov_2.900730_pilon to pilon.fasta [pilon] Writing NODE_3349_length_806_cov_2.099270:1-806 changes to pilon.changes [pilon] Writing updated NODE_3349_length_806_cov_2.099270_pilon to pilon.fasta [pilon] Writing NODE_3350_length_805_cov_62.719298:1-805 changes to pilon.changes [pilon] Writing updated NODE_3350_length_805_cov_62.719298_pilon to pilon.fasta [pilon] Writing NODE_3351_length_805_cov_22.559942:1-805 changes to pilon.changes [pilon] Writing updated NODE_3351_length_805_cov_22.559942_pilon to pilon.fasta [pilon] Writing NODE_3352_length_805_cov_15.994152:1-805 changes to pilon.changes [pilon] Writing updated NODE_3352_length_805_cov_15.994152_pilon to pilon.fasta [pilon] Writing NODE_3353_length_805_cov_7.451754:1-805 changes to pilon.changes [pilon] Writing updated NODE_3353_length_805_cov_7.451754_pilon to pilon.fasta [pilon] Writing NODE_3354_length_805_cov_2.824561:1-805 changes to pilon.changes [pilon] Writing updated NODE_3354_length_805_cov_2.824561_pilon to pilon.fasta [pilon] Writing NODE_3355_length_804_cov_35.042460:1-804 changes to pilon.changes [pilon] Writing updated NODE_3355_length_804_cov_35.042460_pilon to pilon.fasta [pilon] Writing NODE_3356_length_804_cov_28.894583:1-804 changes to pilon.changes [pilon] Writing updated NODE_3356_length_804_cov_28.894583_pilon to pilon.fasta [pilon] Writing NODE_3357_length_803_cov_34.205279:1-803 changes to pilon.changes [pilon] Writing updated NODE_3357_length_803_cov_34.205279_pilon to pilon.fasta [pilon] Writing NODE_3358_length_803_cov_32.438416:1-803 changes to pilon.changes [pilon] Writing updated NODE_3358_length_803_cov_32.438416_pilon to pilon.fasta [pilon] Writing NODE_3359_length_803_cov_13.272727:1-803 changes to pilon.changes [pilon] Writing updated NODE_3359_length_803_cov_13.272727_pilon to pilon.fasta [pilon] Writing NODE_3360_length_803_cov_13.140762:1-803 changes to pilon.changes [pilon] Writing updated NODE_3360_length_803_cov_13.140762_pilon to pilon.fasta [pilon] Writing NODE_3361_length_803_cov_9.219941:1-803 changes to pilon.changes [pilon] Writing updated NODE_3361_length_803_cov_9.219941_pilon to pilon.fasta [pilon] Writing NODE_3362_length_803_cov_3.473607:1-803 changes to pilon.changes [pilon] Writing updated NODE_3362_length_803_cov_3.473607_pilon to pilon.fasta [pilon] Writing NODE_3363_length_803_cov_1.129032:1-803 changes to pilon.changes [pilon] Writing updated NODE_3363_length_803_cov_1.129032_pilon to pilon.fasta [pilon] Writing NODE_3364_length_803_cov_0.873900:1-803 changes to pilon.changes [pilon] Writing updated NODE_3364_length_803_cov_0.873900_pilon to pilon.fasta [pilon] Writing NODE_3365_length_802_cov_56.522761:1-802 changes to pilon.changes [pilon] Writing updated NODE_3365_length_802_cov_56.522761_pilon to pilon.fasta [pilon] Writing NODE_3366_length_802_cov_39.961821:1-802 changes to pilon.changes [pilon] Writing updated NODE_3366_length_802_cov_39.961821_pilon to pilon.fasta [pilon] Writing NODE_3367_length_802_cov_29.820852:1-802 changes to pilon.changes [pilon] Writing updated NODE_3367_length_802_cov_29.820852_pilon to pilon.fasta [pilon] Writing NODE_3368_length_802_cov_27.427313:1-802 changes to pilon.changes [pilon] Writing updated NODE_3368_length_802_cov_27.427313_pilon to pilon.fasta [pilon] Writing NODE_3369_length_802_cov_13.105727:1-802 changes to pilon.changes [pilon] Writing updated NODE_3369_length_802_cov_13.105727_pilon to pilon.fasta [pilon] Writing NODE_3370_length_802_cov_4.599119:1-802 changes to pilon.changes [pilon] Writing updated NODE_3370_length_802_cov_4.599119_pilon to pilon.fasta [pilon] Writing NODE_3371_length_802_cov_4.538913:1-802 changes to pilon.changes [pilon] Writing updated NODE_3371_length_802_cov_4.538913_pilon to pilon.fasta [pilon] Writing NODE_3372_length_802_cov_3.513950:1-802 changes to pilon.changes [pilon] Writing updated NODE_3372_length_802_cov_3.513950_pilon to pilon.fasta [pilon] Writing NODE_3373_length_802_cov_1.602056:1-802 changes to pilon.changes [pilon] Writing updated NODE_3373_length_802_cov_1.602056_pilon to pilon.fasta [pilon] Writing NODE_3374_length_801_cov_11.848529:1-801 changes to pilon.changes [pilon] Writing updated NODE_3374_length_801_cov_11.848529_pilon to pilon.fasta [pilon] Writing NODE_3375_length_801_cov_10.573529:1-801 changes to pilon.changes [pilon] Writing updated NODE_3375_length_801_cov_10.573529_pilon to pilon.fasta [pilon] Writing NODE_3376_length_801_cov_8.464706:1-801 changes to pilon.changes [pilon] Writing updated NODE_3376_length_801_cov_8.464706_pilon to pilon.fasta [pilon] Writing NODE_3377_length_800_cov_77.625920:1-800 changes to pilon.changes [pilon] Writing updated NODE_3377_length_800_cov_77.625920_pilon to pilon.fasta [pilon] Writing NODE_3378_length_800_cov_30.932253:1-800 changes to pilon.changes [pilon] Writing updated NODE_3378_length_800_cov_30.932253_pilon to pilon.fasta [pilon] Writing NODE_3379_length_800_cov_20.300442:1-800 changes to pilon.changes [pilon] Writing updated NODE_3379_length_800_cov_20.300442_pilon to pilon.fasta [pilon] Writing NODE_3380_length_800_cov_10.715758:1-800 changes to pilon.changes [pilon] Writing updated NODE_3380_length_800_cov_10.715758_pilon to pilon.fasta [pilon] Writing NODE_3381_length_800_cov_7.871870:1-800 changes to pilon.changes [pilon] Writing updated NODE_3381_length_800_cov_7.871870_pilon to pilon.fasta [pilon] Writing NODE_3382_length_800_cov_4.306333:1-800 changes to pilon.changes [pilon] Writing updated NODE_3382_length_800_cov_4.306333_pilon to pilon.fasta [pilon] Writing NODE_3383_length_800_cov_3.703976:1-800 changes to pilon.changes [pilon] Writing updated NODE_3383_length_800_cov_3.703976_pilon to pilon.fasta [pilon] Writing NODE_3384_length_800_cov_3.354934:1-800 changes to pilon.changes [pilon] Writing updated NODE_3384_length_800_cov_3.354934_pilon to pilon.fasta [pilon] Writing NODE_3385_length_800_cov_3.016200:1-800 changes to pilon.changes [pilon] Writing updated NODE_3385_length_800_cov_3.016200_pilon to pilon.fasta [pilon] Writing NODE_3386_length_800_cov_1.232695:1-800 changes to pilon.changes [pilon] Writing updated NODE_3386_length_800_cov_1.232695_pilon to pilon.fasta [pilon] Writing NODE_3387_length_799_cov_36.954277:1-799 changes to pilon.changes [pilon] Writing updated NODE_3387_length_799_cov_36.954277_pilon to pilon.fasta [pilon] Writing NODE_3388_length_799_cov_18.988201:1-799 changes to pilon.changes [pilon] Writing updated NODE_3388_length_799_cov_18.988201_pilon to pilon.fasta [pilon] Writing NODE_3389_length_799_cov_14.280236:1-799 changes to pilon.changes [pilon] Writing updated NODE_3389_length_799_cov_14.280236_pilon to pilon.fasta [pilon] Writing NODE_3390_length_799_cov_8.343658:1-799 changes to pilon.changes [pilon] Writing updated NODE_3390_length_799_cov_8.343658_pilon to pilon.fasta [pilon] Writing NODE_3391_length_799_cov_3.387906:1-799 changes to pilon.changes [pilon] Writing updated NODE_3391_length_799_cov_3.387906_pilon to pilon.fasta [pilon] Writing NODE_3392_length_799_cov_2.249263:1-799 changes to pilon.changes [pilon] Writing updated NODE_3392_length_799_cov_2.249263_pilon to pilon.fasta [pilon] Writing NODE_3393_length_799_cov_2.169617:1-799 changes to pilon.changes [pilon] Writing updated NODE_3393_length_799_cov_2.169617_pilon to pilon.fasta [pilon] Writing NODE_3394_length_799_cov_0.951327:1-799 changes to pilon.changes [pilon] Writing updated NODE_3394_length_799_cov_0.951327_pilon to pilon.fasta [pilon] Writing NODE_3395_length_798_cov_51.735598:1-798 changes to pilon.changes [pilon] Writing updated NODE_3395_length_798_cov_51.735598_pilon to pilon.fasta [pilon] Writing NODE_3396_length_798_cov_27.454948:1-798 changes to pilon.changes [pilon] Writing updated NODE_3396_length_798_cov_27.454948_pilon to pilon.fasta [pilon] Writing NODE_3397_length_798_cov_24.389956:1-798 changes to pilon.changes [pilon] Writing updated NODE_3397_length_798_cov_24.389956_pilon to pilon.fasta [pilon] Writing NODE_3398_length_798_cov_20.750369:1-798 changes to pilon.changes [pilon] Writing updated NODE_3398_length_798_cov_20.750369_pilon to pilon.fasta [pilon] Writing NODE_3399_length_798_cov_17.940916:1-798 changes to pilon.changes [pilon] Writing updated NODE_3399_length_798_cov_17.940916_pilon to pilon.fasta [pilon] Writing NODE_3400_length_798_cov_16.271787:1-798 changes to pilon.changes [pilon] Writing updated NODE_3400_length_798_cov_16.271787_pilon to pilon.fasta [pilon] Writing NODE_3401_length_798_cov_15.672083:1-798 changes to pilon.changes [pilon] Writing updated NODE_3401_length_798_cov_15.672083_pilon to pilon.fasta [pilon] Writing NODE_3402_length_798_cov_9.657312:1-798 changes to pilon.changes [pilon] Writing updated NODE_3402_length_798_cov_9.657312_pilon to pilon.fasta [pilon] Writing NODE_3403_length_798_cov_3.872969:1-798 changes to pilon.changes [pilon] Writing updated NODE_3403_length_798_cov_3.872969_pilon to pilon.fasta [pilon] Writing NODE_3404_length_798_cov_2.680945:1-798 changes to pilon.changes [pilon] Writing updated NODE_3404_length_798_cov_2.680945_pilon to pilon.fasta [pilon] Writing NODE_3405_length_798_cov_2.568685:1-798 changes to pilon.changes [pilon] Writing updated NODE_3405_length_798_cov_2.568685_pilon to pilon.fasta [pilon] Writing NODE_3406_length_798_cov_1.528804:1-798 changes to pilon.changes [pilon] Writing updated NODE_3406_length_798_cov_1.528804_pilon to pilon.fasta [pilon] Writing NODE_3407_length_797_cov_35.593195:1-797 changes to pilon.changes [pilon] Writing updated NODE_3407_length_797_cov_35.593195_pilon to pilon.fasta [pilon] Writing NODE_3408_length_797_cov_28.792899:1-797 changes to pilon.changes [pilon] Writing updated NODE_3408_length_797_cov_28.792899_pilon to pilon.fasta [pilon] Writing NODE_3409_length_797_cov_15.408284:1-797 changes to pilon.changes [pilon] Writing updated NODE_3409_length_797_cov_15.408284_pilon to pilon.fasta [pilon] Writing NODE_3410_length_797_cov_14.798817:1-797 changes to pilon.changes [pilon] Writing updated NODE_3410_length_797_cov_14.798817_pilon to pilon.fasta [pilon] Writing NODE_3411_length_797_cov_13.501479:1-797 changes to pilon.changes [pilon] Writing updated NODE_3411_length_797_cov_13.501479_pilon to pilon.fasta [pilon] Writing NODE_3412_length_797_cov_12.394970:1-797 changes to pilon.changes [pilon] Writing updated NODE_3412_length_797_cov_12.394970_pilon to pilon.fasta [pilon] Writing NODE_3413_length_797_cov_9.887574:1-797 changes to pilon.changes [pilon] Writing updated NODE_3413_length_797_cov_9.887574_pilon to pilon.fasta [pilon] Writing NODE_3414_length_797_cov_3.789941:1-797 changes to pilon.changes [pilon] Writing updated NODE_3414_length_797_cov_3.789941_pilon to pilon.fasta [pilon] Writing NODE_3415_length_796_cov_35.733333:1-796 changes to pilon.changes [pilon] Writing updated NODE_3415_length_796_cov_35.733333_pilon to pilon.fasta [pilon] Writing NODE_3416_length_796_cov_34.877037:1-796 changes to pilon.changes [pilon] Writing updated NODE_3416_length_796_cov_34.877037_pilon to pilon.fasta [pilon] Writing NODE_3417_length_796_cov_12.840000:1-796 changes to pilon.changes [pilon] Writing updated NODE_3417_length_796_cov_12.840000_pilon to pilon.fasta [pilon] Writing NODE_3418_length_796_cov_0.946667:1-796 changes to pilon.changes [pilon] Writing updated NODE_3418_length_796_cov_0.946667_pilon to pilon.fasta [pilon] Writing NODE_3419_length_796_cov_0.937778:1-796 changes to pilon.changes [pilon] Writing updated NODE_3419_length_796_cov_0.937778_pilon to pilon.fasta [pilon] Writing NODE_3420_length_795_cov_33.456973:1-795 changes to pilon.changes [pilon] Writing updated NODE_3420_length_795_cov_33.456973_pilon to pilon.fasta [pilon] Writing NODE_3421_length_795_cov_26.956973:1-795 changes to pilon.changes [pilon] Writing updated NODE_3421_length_795_cov_26.956973_pilon to pilon.fasta [pilon] Writing NODE_3422_length_795_cov_19.115727:1-795 changes to pilon.changes [pilon] Writing updated NODE_3422_length_795_cov_19.115727_pilon to pilon.fasta [pilon] Writing NODE_3423_length_795_cov_16.563798:1-795 changes to pilon.changes [pilon] Writing updated NODE_3423_length_795_cov_16.563798_pilon to pilon.fasta [pilon] Writing NODE_3424_length_795_cov_15.470326:1-795 changes to pilon.changes [pilon] Writing updated NODE_3424_length_795_cov_15.470326_pilon to pilon.fasta [pilon] Writing NODE_3425_length_795_cov_15.140950:1-795 changes to pilon.changes [pilon] Writing updated NODE_3425_length_795_cov_15.140950_pilon to pilon.fasta [pilon] Writing NODE_3426_length_795_cov_14.676558:1-795 changes to pilon.changes [pilon] Writing updated NODE_3426_length_795_cov_14.676558_pilon to pilon.fasta [pilon] Writing NODE_3427_length_795_cov_4.287834:1-795 changes to pilon.changes [pilon] Writing updated NODE_3427_length_795_cov_4.287834_pilon to pilon.fasta [pilon] Writing NODE_3428_length_795_cov_1.682493:1-795 changes to pilon.changes [pilon] Writing updated NODE_3428_length_795_cov_1.682493_pilon to pilon.fasta [pilon] Writing NODE_3429_length_794_cov_26.658247:1-794 changes to pilon.changes [pilon] Writing updated NODE_3429_length_794_cov_26.658247_pilon to pilon.fasta [pilon] Writing NODE_3430_length_794_cov_21.570579:1-794 changes to pilon.changes [pilon] Writing updated NODE_3430_length_794_cov_21.570579_pilon to pilon.fasta [pilon] Writing NODE_3431_length_794_cov_7.392273:1-794 changes to pilon.changes [pilon] Writing updated NODE_3431_length_794_cov_7.392273_pilon to pilon.fasta [pilon] Writing NODE_3432_length_794_cov_4.988113:1-794 changes to pilon.changes [pilon] Writing updated NODE_3432_length_794_cov_4.988113_pilon to pilon.fasta [pilon] Writing NODE_3433_length_794_cov_3.988113:1-794 changes to pilon.changes [pilon] Writing updated NODE_3433_length_794_cov_3.988113_pilon to pilon.fasta [pilon] Writing NODE_3434_length_794_cov_3.163447:1-794 changes to pilon.changes [pilon] Writing updated NODE_3434_length_794_cov_3.163447_pilon to pilon.fasta [pilon] Writing NODE_3435_length_793_cov_38.099702:1-793 changes to pilon.changes [pilon] Writing updated NODE_3435_length_793_cov_38.099702_pilon to pilon.fasta [pilon] Writing NODE_3436_length_793_cov_37.867560:1-793 changes to pilon.changes [pilon] Writing updated NODE_3436_length_793_cov_37.867560_pilon to pilon.fasta [pilon] Writing NODE_3437_length_793_cov_14.855655:1-793 changes to pilon.changes [pilon] Writing updated NODE_3437_length_793_cov_14.855655_pilon to pilon.fasta [pilon] Writing NODE_3438_length_793_cov_9.717262:1-793 changes to pilon.changes [pilon] Writing updated NODE_3438_length_793_cov_9.717262_pilon to pilon.fasta [pilon] Writing NODE_3439_length_793_cov_8.994048:1-793 changes to pilon.changes [pilon] Writing updated NODE_3439_length_793_cov_8.994048_pilon to pilon.fasta [pilon] Writing NODE_3440_length_793_cov_2.544643:1-793 changes to pilon.changes [pilon] Writing updated NODE_3440_length_793_cov_2.544643_pilon to pilon.fasta [pilon] Writing NODE_3441_length_793_cov_2.409226:1-793 changes to pilon.changes [pilon] Writing updated NODE_3441_length_793_cov_2.409226_pilon to pilon.fasta [pilon] Writing NODE_3442_length_792_cov_26.301043:1-792 changes to pilon.changes [pilon] Writing updated NODE_3442_length_792_cov_26.301043_pilon to pilon.fasta [pilon] Writing NODE_3443_length_792_cov_21.959762:1-792 changes to pilon.changes [pilon] Writing updated NODE_3443_length_792_cov_21.959762_pilon to pilon.fasta [pilon] Writing NODE_3444_length_792_cov_16.985097:1-792 changes to pilon.changes [pilon] Writing updated NODE_3444_length_792_cov_16.985097_pilon to pilon.fasta [pilon] Writing NODE_3445_length_792_cov_12.485842:1-792 changes to pilon.changes [pilon] Writing updated NODE_3445_length_792_cov_12.485842_pilon to pilon.fasta [pilon] Writing NODE_3446_length_792_cov_4.573770:1-792 changes to pilon.changes [pilon] Writing updated NODE_3446_length_792_cov_4.573770_pilon to pilon.fasta [pilon] Writing NODE_3447_length_792_cov_2.219076:1-792 changes to pilon.changes [pilon] Writing updated NODE_3447_length_792_cov_2.219076_pilon to pilon.fasta [pilon] Writing NODE_3448_length_792_cov_0.789866:1-792 changes to pilon.changes [pilon] Writing updated NODE_3448_length_792_cov_0.789866_pilon to pilon.fasta [pilon] Writing NODE_3449_length_791_cov_66.034328:1-791 changes to pilon.changes [pilon] Writing updated NODE_3449_length_791_cov_66.034328_pilon to pilon.fasta [pilon] Writing NODE_3450_length_791_cov_46.423881:1-791 changes to pilon.changes [pilon] Writing updated NODE_3450_length_791_cov_46.423881_pilon to pilon.fasta [pilon] Writing NODE_3451_length_791_cov_26.322388:1-791 changes to pilon.changes [pilon] Writing updated NODE_3451_length_791_cov_26.322388_pilon to pilon.fasta [pilon] Writing NODE_3452_length_791_cov_21.626866:1-791 changes to pilon.changes [pilon] Writing updated NODE_3452_length_791_cov_21.626866_pilon to pilon.fasta [pilon] Writing NODE_3453_length_791_cov_21.576119:1-791 changes to pilon.changes [pilon] Writing updated NODE_3453_length_791_cov_21.576119_pilon to pilon.fasta [pilon] Writing NODE_3454_length_791_cov_16.989552:1-791 changes to pilon.changes [pilon] Writing updated NODE_3454_length_791_cov_16.989552_pilon to pilon.fasta [pilon] Writing NODE_3455_length_791_cov_11.710448:1-791 changes to pilon.changes [pilon] Writing updated NODE_3455_length_791_cov_11.710448_pilon to pilon.fasta [pilon] Writing NODE_3456_length_791_cov_4.355224:1-791 changes to pilon.changes [pilon] Writing updated NODE_3456_length_791_cov_4.355224_pilon to pilon.fasta [pilon] Writing NODE_3457_length_791_cov_3.044776:1-791 changes to pilon.changes [pilon] Writing updated NODE_3457_length_791_cov_3.044776_pilon to pilon.fasta [pilon] Writing NODE_3458_length_791_cov_1.994030:1-791 changes to pilon.changes [pilon] Writing updated NODE_3458_length_791_cov_1.994030_pilon to pilon.fasta [pilon] Writing NODE_3459_length_790_cov_19.853513:1-790 changes to pilon.changes [pilon] Writing updated NODE_3459_length_790_cov_19.853513_pilon to pilon.fasta [pilon] Writing NODE_3460_length_790_cov_17.496263:1-790 changes to pilon.changes [pilon] Writing updated NODE_3460_length_790_cov_17.496263_pilon to pilon.fasta [pilon] Writing NODE_3461_length_790_cov_16.173393:1-790 changes to pilon.changes [pilon] Writing updated NODE_3461_length_790_cov_16.173393_pilon to pilon.fasta [pilon] Writing NODE_3462_length_790_cov_7.556054:1-790 changes to pilon.changes [pilon] Writing updated NODE_3462_length_790_cov_7.556054_pilon to pilon.fasta [pilon] Writing NODE_3463_length_790_cov_4.372197:1-790 changes to pilon.changes [pilon] Writing updated NODE_3463_length_790_cov_4.372197_pilon to pilon.fasta [pilon] Writing NODE_3464_length_789_cov_25.935629:1-789 changes to pilon.changes [pilon] Writing updated NODE_3464_length_789_cov_25.935629_pilon to pilon.fasta [pilon] Writing NODE_3465_length_789_cov_23.923653:1-789 changes to pilon.changes [pilon] Writing updated NODE_3465_length_789_cov_23.923653_pilon to pilon.fasta [pilon] Writing NODE_3466_length_789_cov_19.525449:1-789 changes to pilon.changes [pilon] Writing updated NODE_3466_length_789_cov_19.525449_pilon to pilon.fasta [pilon] Writing NODE_3467_length_789_cov_18.236527:1-789 changes to pilon.changes [pilon] Writing updated NODE_3467_length_789_cov_18.236527_pilon to pilon.fasta [pilon] Writing NODE_3468_length_789_cov_14.380240:1-789 changes to pilon.changes [pilon] Writing updated NODE_3468_length_789_cov_14.380240_pilon to pilon.fasta [pilon] Writing NODE_3469_length_789_cov_13.336826:1-789 changes to pilon.changes [pilon] Writing updated NODE_3469_length_789_cov_13.336826_pilon to pilon.fasta [pilon] Writing NODE_3470_length_789_cov_2.378743:1-789 changes to pilon.changes [pilon] Writing updated NODE_3470_length_789_cov_2.378743_pilon to pilon.fasta [pilon] Writing NODE_3471_length_789_cov_1.408683:1-789 changes to pilon.changes [pilon] Writing updated NODE_3471_length_789_cov_1.408683_pilon to pilon.fasta [pilon] Writing NODE_3472_length_789_cov_0.913174:1-789 changes to pilon.changes [pilon] Writing updated NODE_3472_length_789_cov_0.913174_pilon to pilon.fasta [pilon] Writing NODE_3473_length_788_cov_45.283358:1-788 changes to pilon.changes [pilon] Writing updated NODE_3473_length_788_cov_45.283358_pilon to pilon.fasta [pilon] Writing NODE_3474_length_788_cov_25.826087:1-788 changes to pilon.changes [pilon] Writing updated NODE_3474_length_788_cov_25.826087_pilon to pilon.fasta [pilon] Writing NODE_3475_length_788_cov_23.023988:1-788 changes to pilon.changes [pilon] Writing updated NODE_3475_length_788_cov_23.023988_pilon to pilon.fasta [pilon] Writing NODE_3476_length_788_cov_9.256372:1-788 changes to pilon.changes [pilon] Writing updated NODE_3476_length_788_cov_9.256372_pilon to pilon.fasta [pilon] Writing NODE_3477_length_788_cov_8.541229:1-788 changes to pilon.changes [pilon] Writing updated NODE_3477_length_788_cov_8.541229_pilon to pilon.fasta [pilon] Writing NODE_3478_length_788_cov_4.103448:1-788 changes to pilon.changes [pilon] Writing updated NODE_3478_length_788_cov_4.103448_pilon to pilon.fasta [pilon] Writing NODE_3479_length_788_cov_3.347826:1-788 changes to pilon.changes [pilon] Writing updated NODE_3479_length_788_cov_3.347826_pilon to pilon.fasta [pilon] Writing NODE_3480_length_788_cov_2.743628:1-788 changes to pilon.changes [pilon] Writing updated NODE_3480_length_788_cov_2.743628_pilon to pilon.fasta [pilon] Writing NODE_3481_length_788_cov_1.329835:1-788 changes to pilon.changes [pilon] Writing updated NODE_3481_length_788_cov_1.329835_pilon to pilon.fasta [pilon] Writing NODE_3482_length_787_cov_30.761261:1-787 changes to pilon.changes [pilon] Writing updated NODE_3482_length_787_cov_30.761261_pilon to pilon.fasta [pilon] Writing NODE_3483_length_787_cov_21.381381:1-787 changes to pilon.changes [pilon] Writing updated NODE_3483_length_787_cov_21.381381_pilon to pilon.fasta [pilon] Writing NODE_3484_length_787_cov_20.060060:1-787 changes to pilon.changes [pilon] Writing updated NODE_3484_length_787_cov_20.060060_pilon to pilon.fasta [pilon] Writing NODE_3485_length_787_cov_17.555556:1-787 changes to pilon.changes [pilon] Writing updated NODE_3485_length_787_cov_17.555556_pilon to pilon.fasta [pilon] Writing NODE_3486_length_787_cov_8.055556:1-787 changes to pilon.changes [pilon] Writing updated NODE_3486_length_787_cov_8.055556_pilon to pilon.fasta [pilon] Writing NODE_3487_length_787_cov_3.408408:1-787 changes to pilon.changes [pilon] Writing updated NODE_3487_length_787_cov_3.408408_pilon to pilon.fasta [pilon] Writing NODE_3488_length_787_cov_2.195195:1-787 changes to pilon.changes [pilon] Writing updated NODE_3488_length_787_cov_2.195195_pilon to pilon.fasta [pilon] Writing NODE_3489_length_787_cov_2.061562:1-787 changes to pilon.changes [pilon] Writing updated NODE_3489_length_787_cov_2.061562_pilon to pilon.fasta [pilon] Writing NODE_3490_length_786_cov_15.054135:1-786 changes to pilon.changes [pilon] Writing updated NODE_3490_length_786_cov_15.054135_pilon to pilon.fasta [pilon] Writing NODE_3491_length_785_cov_38.694277:1-785 changes to pilon.changes [pilon] Writing updated NODE_3491_length_785_cov_38.694277_pilon to pilon.fasta [pilon] Writing NODE_3492_length_785_cov_25.353916:1-785 changes to pilon.changes [pilon] Writing updated NODE_3492_length_785_cov_25.353916_pilon to pilon.fasta [pilon] Writing NODE_3493_length_785_cov_1.631024:1-785 changes to pilon.changes [pilon] Writing updated NODE_3493_length_785_cov_1.631024_pilon to pilon.fasta [pilon] Writing NODE_3494_length_784_cov_35.037707:1-784 changes to pilon.changes [pilon] Writing updated NODE_3494_length_784_cov_35.037707_pilon to pilon.fasta [pilon] Writing NODE_3495_length_784_cov_28.764706:1-784 changes to pilon.changes [pilon] Writing updated NODE_3495_length_784_cov_28.764706_pilon to pilon.fasta [pilon] Writing NODE_3496_length_784_cov_9.633484:1-784 changes to pilon.changes [pilon] Writing updated NODE_3496_length_784_cov_9.633484_pilon to pilon.fasta [pilon] Writing NODE_3497_length_784_cov_1.431373:1-784 changes to pilon.changes [pilon] Writing updated NODE_3497_length_784_cov_1.431373_pilon to pilon.fasta [pilon] Writing NODE_3498_length_783_cov_30.090634:1-783 changes to pilon.changes [pilon] Writing updated NODE_3498_length_783_cov_30.090634_pilon to pilon.fasta [pilon] Writing NODE_3499_length_783_cov_29.605740:1-783 changes to pilon.changes [pilon] Writing updated NODE_3499_length_783_cov_29.605740_pilon to pilon.fasta [pilon] Writing NODE_3500_length_783_cov_25.714502:1-783 changes to pilon.changes [pilon] Writing updated NODE_3500_length_783_cov_25.714502_pilon to pilon.fasta [pilon] Writing NODE_3501_length_783_cov_18.009063:1-783 changes to pilon.changes [pilon] Writing updated NODE_3501_length_783_cov_18.009063_pilon to pilon.fasta [pilon] Writing NODE_3502_length_783_cov_3.737160:1-783 changes to pilon.changes [pilon] Writing updated NODE_3502_length_783_cov_3.737160_pilon to pilon.fasta [pilon] Writing NODE_3503_length_783_cov_3.599698:1-783 changes to pilon.changes [pilon] Writing updated NODE_3503_length_783_cov_3.599698_pilon to pilon.fasta [pilon] Writing NODE_3504_length_783_cov_2.966767:1-783 changes to pilon.changes [pilon] Writing updated NODE_3504_length_783_cov_2.966767_pilon to pilon.fasta [pilon] Writing NODE_3505_length_783_cov_0.898792:1-783 changes to pilon.changes [pilon] Writing updated NODE_3505_length_783_cov_0.898792_pilon to pilon.fasta [pilon] Writing NODE_3506_length_782_cov_58.760968:1-782 changes to pilon.changes [pilon] Writing updated NODE_3506_length_782_cov_58.760968_pilon to pilon.fasta [pilon] Writing NODE_3507_length_782_cov_24.098336:1-782 changes to pilon.changes [pilon] Writing updated NODE_3507_length_782_cov_24.098336_pilon to pilon.fasta [pilon] Writing NODE_3508_length_782_cov_11.249622:1-782 changes to pilon.changes [pilon] Writing updated NODE_3508_length_782_cov_11.249622_pilon to pilon.fasta [pilon] Writing NODE_3509_length_782_cov_1.205749:1-782 changes to pilon.changes [pilon] Writing updated NODE_3509_length_782_cov_1.205749_pilon to pilon.fasta [pilon] Writing NODE_3510_length_782_cov_0.623298:1-782 changes to pilon.changes [pilon] Writing updated NODE_3510_length_782_cov_0.623298_pilon to pilon.fasta [pilon] Writing NODE_3511_length_781_cov_49.093939:1-781 changes to pilon.changes [pilon] Writing updated NODE_3511_length_781_cov_49.093939_pilon to pilon.fasta [pilon] Writing NODE_3512_length_781_cov_26.181818:1-781 changes to pilon.changes [pilon] Writing updated NODE_3512_length_781_cov_26.181818_pilon to pilon.fasta [pilon] Writing NODE_3513_length_781_cov_22.531818:1-781 changes to pilon.changes [pilon] Writing updated NODE_3513_length_781_cov_22.531818_pilon to pilon.fasta [pilon] Writing NODE_3514_length_781_cov_20.327273:1-781 changes to pilon.changes [pilon] Writing updated NODE_3514_length_781_cov_20.327273_pilon to pilon.fasta [pilon] Writing NODE_3515_length_781_cov_14.330303:1-781 changes to pilon.changes [pilon] Writing updated NODE_3515_length_781_cov_14.330303_pilon to pilon.fasta [pilon] Writing NODE_3516_length_781_cov_9.856061:1-781 changes to pilon.changes [pilon] Writing updated NODE_3516_length_781_cov_9.856061_pilon to pilon.fasta [pilon] Writing NODE_3517_length_781_cov_3.706061:1-781 changes to pilon.changes [pilon] Writing updated NODE_3517_length_781_cov_3.706061_pilon to pilon.fasta [pilon] Writing NODE_3518_length_781_cov_2.728788:1-781 changes to pilon.changes [pilon] Writing updated NODE_3518_length_781_cov_2.728788_pilon to pilon.fasta [pilon] Writing NODE_3519_length_781_cov_1.468182:1-781 changes to pilon.changes [pilon] Writing updated NODE_3519_length_781_cov_1.468182_pilon to pilon.fasta [pilon] Writing NODE_3520_length_781_cov_1.390909:1-781 changes to pilon.changes [pilon] Writing updated NODE_3520_length_781_cov_1.390909_pilon to pilon.fasta [pilon] Writing NODE_3521_length_781_cov_0.654545:1-781 changes to pilon.changes [pilon] Writing updated NODE_3521_length_781_cov_0.654545_pilon to pilon.fasta [pilon] Writing NODE_3522_length_780_cov_25.153263:1-780 changes to pilon.changes [pilon] Writing updated NODE_3522_length_780_cov_25.153263_pilon to pilon.fasta [pilon] Writing NODE_3523_length_780_cov_21.614568:1-780 changes to pilon.changes [pilon] Writing updated NODE_3523_length_780_cov_21.614568_pilon to pilon.fasta [pilon] Writing NODE_3524_length_780_cov_17.261002:1-780 changes to pilon.changes [pilon] Writing updated NODE_3524_length_780_cov_17.261002_pilon to pilon.fasta [pilon] Writing NODE_3525_length_780_cov_13.978756:1-780 changes to pilon.changes [pilon] Writing updated NODE_3525_length_780_cov_13.978756_pilon to pilon.fasta [pilon] Writing NODE_3526_length_780_cov_2.122914:1-780 changes to pilon.changes [pilon] Writing updated NODE_3526_length_780_cov_2.122914_pilon to pilon.fasta [pilon] Writing NODE_3527_length_780_cov_1.095599:1-780 changes to pilon.changes [pilon] Writing updated NODE_3527_length_780_cov_1.095599_pilon to pilon.fasta [pilon] Writing NODE_3528_length_779_cov_45.196049:1-779 changes to pilon.changes [pilon] Writing updated NODE_3528_length_779_cov_45.196049_pilon to pilon.fasta [pilon] Writing NODE_3529_length_779_cov_43.253799:1-779 changes to pilon.changes [pilon] Writing updated NODE_3529_length_779_cov_43.253799_pilon to pilon.fasta [pilon] Writing NODE_3530_length_779_cov_31.609422:1-779 changes to pilon.changes [pilon] Writing updated NODE_3530_length_779_cov_31.609422_pilon to pilon.fasta [pilon] Writing NODE_3531_length_779_cov_24.332827:1-779 changes to pilon.changes [pilon] Writing updated NODE_3531_length_779_cov_24.332827_pilon to pilon.fasta [pilon] Writing NODE_3532_length_779_cov_15.598784:1-779 changes to pilon.changes [pilon] Writing updated NODE_3532_length_779_cov_15.598784_pilon to pilon.fasta [pilon] Writing NODE_3533_length_779_cov_15.489362:1-779 changes to pilon.changes [pilon] Writing updated NODE_3533_length_779_cov_15.489362_pilon to pilon.fasta [pilon] Writing NODE_3534_length_779_cov_12.858663:1-779 changes to pilon.changes [pilon] Writing updated NODE_3534_length_779_cov_12.858663_pilon to pilon.fasta [pilon] Writing NODE_3535_length_779_cov_11.364742:1-779 changes to pilon.changes [pilon] Writing updated NODE_3535_length_779_cov_11.364742_pilon to pilon.fasta [pilon] Writing NODE_3536_length_779_cov_10.089666:1-779 changes to pilon.changes [pilon] Writing updated NODE_3536_length_779_cov_10.089666_pilon to pilon.fasta [pilon] Writing NODE_3537_length_779_cov_0.806991:1-779 changes to pilon.changes [pilon] Writing updated NODE_3537_length_779_cov_0.806991_pilon to pilon.fasta [pilon] Writing NODE_3538_length_778_cov_49.109589:1-778 changes to pilon.changes [pilon] Writing updated NODE_3538_length_778_cov_49.109589_pilon to pilon.fasta [pilon] Writing NODE_3539_length_778_cov_36.039574:1-778 changes to pilon.changes [pilon] Writing updated NODE_3539_length_778_cov_36.039574_pilon to pilon.fasta [pilon] Writing NODE_3540_length_778_cov_35.127854:1-778 changes to pilon.changes [pilon] Writing updated NODE_3540_length_778_cov_35.127854_pilon to pilon.fasta [pilon] Writing NODE_3541_length_778_cov_29.692542:1-778 changes to pilon.changes [pilon] Writing updated NODE_3541_length_778_cov_29.692542_pilon to pilon.fasta [pilon] Writing NODE_3542_length_778_cov_13.502283:1-778 changes to pilon.changes [pilon] Writing updated NODE_3542_length_778_cov_13.502283_pilon to pilon.fasta [pilon] Writing NODE_3543_length_778_cov_11.659056:1-778 changes to pilon.changes [pilon] Writing updated NODE_3543_length_778_cov_11.659056_pilon to pilon.fasta [pilon] Writing NODE_3544_length_778_cov_10.394216:1-778 changes to pilon.changes [pilon] Writing updated NODE_3544_length_778_cov_10.394216_pilon to pilon.fasta [pilon] Writing NODE_3545_length_778_cov_2.324201:1-778 changes to pilon.changes [pilon] Writing updated NODE_3545_length_778_cov_2.324201_pilon to pilon.fasta [pilon] Writing NODE_3546_length_778_cov_1.986301:1-778 changes to pilon.changes [pilon] Writing updated NODE_3546_length_778_cov_1.986301_pilon to pilon.fasta [pilon] Writing NODE_3547_length_777_cov_26.650915:1-777 changes to pilon.changes [pilon] Writing updated NODE_3547_length_777_cov_26.650915_pilon to pilon.fasta [pilon] Writing NODE_3548_length_777_cov_24.028963:1-777 changes to pilon.changes [pilon] Writing updated NODE_3548_length_777_cov_24.028963_pilon to pilon.fasta [pilon] Writing NODE_3549_length_777_cov_20.949695:1-777 changes to pilon.changes [pilon] Writing updated NODE_3549_length_777_cov_20.949695_pilon to pilon.fasta [pilon] Writing NODE_3550_length_777_cov_20.289634:1-777 changes to pilon.changes [pilon] Writing updated NODE_3550_length_777_cov_20.289634_pilon to pilon.fasta [pilon] Writing NODE_3551_length_777_cov_17.760671:1-777 changes to pilon.changes [pilon] Writing updated NODE_3551_length_777_cov_17.760671_pilon to pilon.fasta [pilon] Writing NODE_3552_length_777_cov_7.842988:1-777 changes to pilon.changes [pilon] Writing updated NODE_3552_length_777_cov_7.842988_pilon to pilon.fasta [pilon] Writing NODE_3553_length_777_cov_6.858232:1-777 changes to pilon.changes [pilon] Writing updated NODE_3553_length_777_cov_6.858232_pilon to pilon.fasta [pilon] Writing NODE_3554_length_777_cov_2.644817:1-777 changes to pilon.changes [pilon] Writing updated NODE_3554_length_777_cov_2.644817_pilon to pilon.fasta [pilon] Writing NODE_3555_length_776_cov_54.525191:1-776 changes to pilon.changes [pilon] Writing updated NODE_3555_length_776_cov_54.525191_pilon to pilon.fasta [pilon] Writing NODE_3556_length_776_cov_53.097710:1-776 changes to pilon.changes [pilon] Writing updated NODE_3556_length_776_cov_53.097710_pilon to pilon.fasta [pilon] Writing NODE_3557_length_776_cov_36.583206:1-776 changes to pilon.changes [pilon] Writing updated NODE_3557_length_776_cov_36.583206_pilon to pilon.fasta [pilon] Writing NODE_3558_length_776_cov_27.082443:1-776 changes to pilon.changes [pilon] Writing updated NODE_3558_length_776_cov_27.082443_pilon to pilon.fasta [pilon] Writing NODE_3559_length_776_cov_26.038168:1-776 changes to pilon.changes [pilon] Writing updated NODE_3559_length_776_cov_26.038168_pilon to pilon.fasta [pilon] Writing NODE_3560_length_776_cov_15.641221:1-776 changes to pilon.changes [pilon] Writing updated NODE_3560_length_776_cov_15.641221_pilon to pilon.fasta [pilon] Writing NODE_3561_length_775_cov_27.974006:1-775 changes to pilon.changes [pilon] Writing updated NODE_3561_length_775_cov_27.974006_pilon to pilon.fasta [pilon] Writing NODE_3562_length_775_cov_26.759939:1-775 changes to pilon.changes [pilon] Writing updated NODE_3562_length_775_cov_26.759939_pilon to pilon.fasta [pilon] Writing NODE_3563_length_775_cov_21.405199:1-775 changes to pilon.changes [pilon] Writing updated NODE_3563_length_775_cov_21.405199_pilon to pilon.fasta [pilon] Writing NODE_3564_length_775_cov_12.649847:1-775 changes to pilon.changes [pilon] Writing updated NODE_3564_length_775_cov_12.649847_pilon to pilon.fasta [pilon] Writing NODE_3565_length_774_cov_45.900459:1-774 changes to pilon.changes [pilon] Writing updated NODE_3565_length_774_cov_45.900459_pilon to pilon.fasta [pilon] Writing NODE_3566_length_774_cov_44.261868:1-774 changes to pilon.changes [pilon] Writing updated NODE_3566_length_774_cov_44.261868_pilon to pilon.fasta [pilon] Writing NODE_3567_length_774_cov_26.024502:1-774 changes to pilon.changes [pilon] Writing updated NODE_3567_length_774_cov_26.024502_pilon to pilon.fasta [pilon] Writing NODE_3568_length_774_cov_20.125574:1-774 changes to pilon.changes [pilon] Writing updated NODE_3568_length_774_cov_20.125574_pilon to pilon.fasta [pilon] Writing NODE_3569_length_774_cov_16.943338:1-774 changes to pilon.changes [pilon] Writing updated NODE_3569_length_774_cov_16.943338_pilon to pilon.fasta [pilon] Writing NODE_3570_length_774_cov_15.442573:1-774 changes to pilon.changes [pilon] Writing updated NODE_3570_length_774_cov_15.442573_pilon to pilon.fasta [pilon] Writing NODE_3571_length_774_cov_10.952527:1-774 changes to pilon.changes [pilon] Writing updated NODE_3571_length_774_cov_10.952527_pilon to pilon.fasta [pilon] Writing NODE_3572_length_774_cov_7.869832:1-774 changes to pilon.changes [pilon] Writing updated NODE_3572_length_774_cov_7.869832_pilon to pilon.fasta [pilon] Writing NODE_3573_length_774_cov_4.245023:1-774 changes to pilon.changes [pilon] Writing updated NODE_3573_length_774_cov_4.245023_pilon to pilon.fasta [pilon] Writing NODE_3574_length_774_cov_1.300153:1-774 changes to pilon.changes [pilon] Writing updated NODE_3574_length_774_cov_1.300153_pilon to pilon.fasta [pilon] Writing NODE_3575_length_773_cov_39.108896:1-773 changes to pilon.changes [pilon] Writing updated NODE_3575_length_773_cov_39.108896_pilon to pilon.fasta [pilon] Writing NODE_3576_length_773_cov_13.576687:1-773 changes to pilon.changes [pilon] Writing updated NODE_3576_length_773_cov_13.576687_pilon to pilon.fasta [pilon] Writing NODE_3577_length_773_cov_9.118098:1-773 changes to pilon.changes [pilon] Writing updated NODE_3577_length_773_cov_9.118098_pilon to pilon.fasta [pilon] Writing NODE_3578_length_773_cov_6.815951:1-773 changes to pilon.changes [pilon] Writing updated NODE_3578_length_773_cov_6.815951_pilon to pilon.fasta [pilon] Writing NODE_3579_length_772_cov_31.250384:1-772 changes to pilon.changes [pilon] Writing updated NODE_3579_length_772_cov_31.250384_pilon to pilon.fasta [pilon] Writing NODE_3580_length_772_cov_24.678955:1-772 changes to pilon.changes [pilon] Writing updated NODE_3580_length_772_cov_24.678955_pilon to pilon.fasta [pilon] Writing NODE_3581_length_772_cov_16.425499:1-772 changes to pilon.changes [pilon] Writing updated NODE_3581_length_772_cov_16.425499_pilon to pilon.fasta [pilon] Writing NODE_3582_length_771_cov_20.361538:1-771 changes to pilon.changes [pilon] Writing updated NODE_3582_length_771_cov_20.361538_pilon to pilon.fasta [pilon] Writing NODE_3583_length_771_cov_19.432308:1-771 changes to pilon.changes [pilon] Writing updated NODE_3583_length_771_cov_19.432308_pilon to pilon.fasta [pilon] Writing NODE_3584_length_771_cov_18.235385:1-771 changes to pilon.changes [pilon] Writing updated NODE_3584_length_771_cov_18.235385_pilon to pilon.fasta [pilon] Writing NODE_3585_length_771_cov_16.924615:1-771 changes to pilon.changes [pilon] Writing updated NODE_3585_length_771_cov_16.924615_pilon to pilon.fasta [pilon] Writing NODE_3586_length_771_cov_11.223077:1-771 changes to pilon.changes [pilon] Writing updated NODE_3586_length_771_cov_11.223077_pilon to pilon.fasta [pilon] Writing NODE_3587_length_771_cov_11.110769:1-771 changes to pilon.changes [pilon] Writing updated NODE_3587_length_771_cov_11.110769_pilon to pilon.fasta [pilon] Writing NODE_3588_length_771_cov_2.360000:1-771 changes to pilon.changes [pilon] Writing updated NODE_3588_length_771_cov_2.360000_pilon to pilon.fasta [pilon] Writing NODE_3589_length_771_cov_0.700000:1-771 changes to pilon.changes [pilon] Writing updated NODE_3589_length_771_cov_0.700000_pilon to pilon.fasta [pilon] Writing NODE_3590_length_770_cov_43.870570:1-770 changes to pilon.changes [pilon] Writing updated NODE_3590_length_770_cov_43.870570_pilon to pilon.fasta [pilon] Writing NODE_3591_length_770_cov_28.748844:1-770 changes to pilon.changes [pilon] Writing updated NODE_3591_length_770_cov_28.748844_pilon to pilon.fasta [pilon] Writing NODE_3592_length_770_cov_17.303544:1-770 changes to pilon.changes [pilon] Writing updated NODE_3592_length_770_cov_17.303544_pilon to pilon.fasta [pilon] Writing NODE_3593_length_770_cov_13.734977:1-770 changes to pilon.changes [pilon] Writing updated NODE_3593_length_770_cov_13.734977_pilon to pilon.fasta [pilon] Writing NODE_3594_length_770_cov_8.768875:1-770 changes to pilon.changes [pilon] Writing updated NODE_3594_length_770_cov_8.768875_pilon to pilon.fasta [pilon] Writing NODE_3595_length_770_cov_0.833590:1-770 changes to pilon.changes [pilon] Writing updated NODE_3595_length_770_cov_0.833590_pilon to pilon.fasta [pilon] Writing NODE_3596_length_769_cov_32.723765:1-769 changes to pilon.changes [pilon] Writing updated NODE_3596_length_769_cov_32.723765_pilon to pilon.fasta [pilon] Writing NODE_3597_length_769_cov_14.717593:1-769 changes to pilon.changes [pilon] Writing updated NODE_3597_length_769_cov_14.717593_pilon to pilon.fasta [pilon] Writing NODE_3598_length_769_cov_8.229938:1-769 changes to pilon.changes [pilon] Writing updated NODE_3598_length_769_cov_8.229938_pilon to pilon.fasta [pilon] Writing NODE_3599_length_768_cov_41.355487:1-768 changes to pilon.changes [pilon] Writing updated NODE_3599_length_768_cov_41.355487_pilon to pilon.fasta [pilon] Writing NODE_3600_length_768_cov_24.360124:1-768 changes to pilon.changes [pilon] Writing updated NODE_3600_length_768_cov_24.360124_pilon to pilon.fasta [pilon] Writing NODE_3601_length_768_cov_13.211747:1-768 changes to pilon.changes [pilon] Writing updated NODE_3601_length_768_cov_13.211747_pilon to pilon.fasta [pilon] Writing NODE_3602_length_768_cov_6.664606:1-768 changes to pilon.changes [pilon] Writing updated NODE_3602_length_768_cov_6.664606_pilon to pilon.fasta [pilon] Writing NODE_3603_length_768_cov_5.669243:1-768 changes to pilon.changes [pilon] Writing updated NODE_3603_length_768_cov_5.669243_pilon to pilon.fasta [pilon] Writing NODE_3604_length_768_cov_2.812983:1-768 changes to pilon.changes [pilon] Writing updated NODE_3604_length_768_cov_2.812983_pilon to pilon.fasta [pilon] Writing NODE_3605_length_768_cov_2.775889:1-768 changes to pilon.changes [pilon] Writing updated NODE_3605_length_768_cov_2.775889_pilon to pilon.fasta [pilon] Writing NODE_3606_length_767_cov_33.309598:1-767 changes to pilon.changes [pilon] Writing updated NODE_3606_length_767_cov_33.309598_pilon to pilon.fasta [pilon] Writing NODE_3607_length_767_cov_22.164087:1-767 changes to pilon.changes [pilon] Writing updated NODE_3607_length_767_cov_22.164087_pilon to pilon.fasta [pilon] Writing NODE_3608_length_767_cov_16.620743:1-767 changes to pilon.changes [pilon] Writing updated NODE_3608_length_767_cov_16.620743_pilon to pilon.fasta [pilon] Writing NODE_3609_length_767_cov_11.058824:1-767 changes to pilon.changes [pilon] Writing updated NODE_3609_length_767_cov_11.058824_pilon to pilon.fasta [pilon] Writing NODE_3610_length_767_cov_9.876161:1-767 changes to pilon.changes [pilon] Writing updated NODE_3610_length_767_cov_9.876161_pilon to pilon.fasta [pilon] Writing NODE_3611_length_767_cov_9.729102:1-767 changes to pilon.changes [pilon] Writing updated NODE_3611_length_767_cov_9.729102_pilon to pilon.fasta [pilon] Writing NODE_3612_length_767_cov_7.246130:1-767 changes to pilon.changes [pilon] Writing updated NODE_3612_length_767_cov_7.246130_pilon to pilon.fasta [pilon] Writing NODE_3613_length_767_cov_5.171827:1-767 changes to pilon.changes [pilon] Writing updated NODE_3613_length_767_cov_5.171827_pilon to pilon.fasta [pilon] Writing NODE_3614_length_767_cov_2.317337:1-767 changes to pilon.changes [pilon] Writing updated NODE_3614_length_767_cov_2.317337_pilon to pilon.fasta [pilon] Writing NODE_3615_length_767_cov_2.154799:1-767 changes to pilon.changes [pilon] Writing updated NODE_3615_length_767_cov_2.154799_pilon to pilon.fasta [pilon] Writing NODE_3616_length_767_cov_1.317337:1-767 changes to pilon.changes [pilon] Writing updated NODE_3616_length_767_cov_1.317337_pilon to pilon.fasta [pilon] Writing NODE_3617_length_766_cov_30.217054:1-766 changes to pilon.changes [pilon] Writing updated NODE_3617_length_766_cov_30.217054_pilon to pilon.fasta [pilon] Writing NODE_3618_length_766_cov_13.037209:1-766 changes to pilon.changes [pilon] Writing updated NODE_3618_length_766_cov_13.037209_pilon to pilon.fasta [pilon] Writing NODE_3619_length_766_cov_9.871318:1-766 changes to pilon.changes [pilon] Writing updated NODE_3619_length_766_cov_9.871318_pilon to pilon.fasta [pilon] Writing NODE_3620_length_765_cov_21.594720:1-765 changes to pilon.changes [pilon] Writing updated NODE_3620_length_765_cov_21.594720_pilon to pilon.fasta [pilon] Writing NODE_3621_length_765_cov_15.364907:1-765 changes to pilon.changes [pilon] Writing updated NODE_3621_length_765_cov_15.364907_pilon to pilon.fasta [pilon] Writing NODE_3622_length_765_cov_14.127329:1-765 changes to pilon.changes [pilon] Writing updated NODE_3622_length_765_cov_14.127329_pilon to pilon.fasta [pilon] Writing NODE_3623_length_765_cov_9.549689:1-765 changes to pilon.changes [pilon] Writing updated NODE_3623_length_765_cov_9.549689_pilon to pilon.fasta [pilon] Writing NODE_3624_length_765_cov_5.192547:1-765 changes to pilon.changes [pilon] Writing updated NODE_3624_length_765_cov_5.192547_pilon to pilon.fasta [pilon] Writing NODE_3625_length_765_cov_1.149068:1-765 changes to pilon.changes [pilon] Writing updated NODE_3625_length_765_cov_1.149068_pilon to pilon.fasta [pilon] Writing NODE_3626_length_764_cov_35.171073:1-764 changes to pilon.changes [pilon] Writing updated NODE_3626_length_764_cov_35.171073_pilon to pilon.fasta [pilon] Writing NODE_3627_length_764_cov_34.105754:1-764 changes to pilon.changes [pilon] Writing updated NODE_3627_length_764_cov_34.105754_pilon to pilon.fasta [pilon] Writing NODE_3628_length_764_cov_27.297045:1-764 changes to pilon.changes [pilon] Writing updated NODE_3628_length_764_cov_27.297045_pilon to pilon.fasta [pilon] Writing NODE_3629_length_764_cov_21.860031:1-764 changes to pilon.changes [pilon] Writing updated NODE_3629_length_764_cov_21.860031_pilon to pilon.fasta [pilon] Writing NODE_3630_length_764_cov_8.528771:1-764 changes to pilon.changes [pilon] Writing updated NODE_3630_length_764_cov_8.528771_pilon to pilon.fasta [pilon] Writing NODE_3631_length_764_cov_3.300156:1-764 changes to pilon.changes [pilon] Writing updated NODE_3631_length_764_cov_3.300156_pilon to pilon.fasta [pilon] Writing NODE_3632_length_764_cov_2.502333:1-764 changes to pilon.changes [pilon] Writing updated NODE_3632_length_764_cov_2.502333_pilon to pilon.fasta [pilon] Writing NODE_3633_length_764_cov_1.040435:1-764 changes to pilon.changes [pilon] Writing updated NODE_3633_length_764_cov_1.040435_pilon to pilon.fasta [pilon] Writing NODE_3634_length_763_cov_28.928349:1-763 changes to pilon.changes [pilon] Writing updated NODE_3634_length_763_cov_28.928349_pilon to pilon.fasta [pilon] Writing NODE_3635_length_763_cov_28.331776:1-763 changes to pilon.changes [pilon] Writing updated NODE_3635_length_763_cov_28.331776_pilon to pilon.fasta [pilon] Writing NODE_3636_length_763_cov_26.593458:1-763 changes to pilon.changes [pilon] Writing updated NODE_3636_length_763_cov_26.593458_pilon to pilon.fasta [pilon] Writing NODE_3637_length_763_cov_26.528037:1-763 changes to pilon.changes [pilon] Writing updated NODE_3637_length_763_cov_26.528037_pilon to pilon.fasta [pilon] Writing NODE_3638_length_763_cov_9.942368:1-763 changes to pilon.changes [pilon] Writing updated NODE_3638_length_763_cov_9.942368_pilon to pilon.fasta [pilon] Writing NODE_3639_length_763_cov_6.802181:1-763 changes to pilon.changes [pilon] Writing updated NODE_3639_length_763_cov_6.802181_pilon to pilon.fasta [pilon] Writing NODE_3640_length_763_cov_3.188474:1-763 changes to pilon.changes [pilon] Writing updated NODE_3640_length_763_cov_3.188474_pilon to pilon.fasta [pilon] Writing NODE_3641_length_763_cov_2.971963:1-763 changes to pilon.changes [pilon] Writing updated NODE_3641_length_763_cov_2.971963_pilon to pilon.fasta [pilon] Writing NODE_3642_length_762_cov_66.355694:1-762 changes to pilon.changes [pilon] Writing updated NODE_3642_length_762_cov_66.355694_pilon to pilon.fasta [pilon] Writing NODE_3643_length_762_cov_41.664587:1-762 changes to pilon.changes [pilon] Writing updated NODE_3643_length_762_cov_41.664587_pilon to pilon.fasta [pilon] Writing NODE_3644_length_762_cov_26.237129:1-762 changes to pilon.changes [pilon] Writing updated NODE_3644_length_762_cov_26.237129_pilon to pilon.fasta [pilon] Writing NODE_3645_length_762_cov_19.989080:1-762 changes to pilon.changes [pilon] Writing updated NODE_3645_length_762_cov_19.989080_pilon to pilon.fasta [pilon] Writing NODE_3646_length_762_cov_15.804992:1-762 changes to pilon.changes [pilon] Writing updated NODE_3646_length_762_cov_15.804992_pilon to pilon.fasta [pilon] Writing NODE_3647_length_762_cov_15.410296:1-762 changes to pilon.changes [pilon] Writing updated NODE_3647_length_762_cov_15.410296_pilon to pilon.fasta [pilon] Writing NODE_3648_length_762_cov_6.277691:1-762 changes to pilon.changes [pilon] Writing updated NODE_3648_length_762_cov_6.277691_pilon to pilon.fasta [pilon] Writing NODE_3649_length_762_cov_3.265211:1-762 changes to pilon.changes [pilon] Writing updated NODE_3649_length_762_cov_3.265211_pilon to pilon.fasta [pilon] Writing NODE_3650_length_762_cov_2.552262:1-762 changes to pilon.changes [pilon] Writing updated NODE_3650_length_762_cov_2.552262_pilon to pilon.fasta [pilon] Writing NODE_3651_length_762_cov_1.789392:1-762 changes to pilon.changes [pilon] Writing updated NODE_3651_length_762_cov_1.789392_pilon to pilon.fasta [pilon] Writing NODE_3652_length_761_cov_46.362500:1-761 changes to pilon.changes [pilon] Writing updated NODE_3652_length_761_cov_46.362500_pilon to pilon.fasta [pilon] Writing NODE_3653_length_761_cov_31.326563:1-761 changes to pilon.changes [pilon] Writing updated NODE_3653_length_761_cov_31.326563_pilon to pilon.fasta [pilon] Writing NODE_3654_length_761_cov_30.667188:1-761 changes to pilon.changes [pilon] Writing updated NODE_3654_length_761_cov_30.667188_pilon to pilon.fasta [pilon] Writing NODE_3655_length_761_cov_29.812500:1-761 changes to pilon.changes [pilon] Writing updated NODE_3655_length_761_cov_29.812500_pilon to pilon.fasta [pilon] Writing NODE_3656_length_761_cov_29.387500:1-761 changes to pilon.changes [pilon] Writing updated NODE_3656_length_761_cov_29.387500_pilon to pilon.fasta [pilon] Writing NODE_3657_length_761_cov_13.189063:1-761 changes to pilon.changes [pilon] Writing updated NODE_3657_length_761_cov_13.189063_pilon to pilon.fasta [pilon] Writing NODE_3658_length_760_cov_25.042254:1-760 changes to pilon.changes [pilon] Writing updated NODE_3658_length_760_cov_25.042254_pilon to pilon.fasta [pilon] Writing NODE_3659_length_760_cov_18.533646:1-760 changes to pilon.changes [pilon] Writing updated NODE_3659_length_760_cov_18.533646_pilon to pilon.fasta [pilon] Writing NODE_3660_length_760_cov_10.205008:1-760 changes to pilon.changes [pilon] Writing updated NODE_3660_length_760_cov_10.205008_pilon to pilon.fasta [pilon] Writing NODE_3661_length_760_cov_2.627543:1-760 changes to pilon.changes [pilon] Writing updated NODE_3661_length_760_cov_2.627543_pilon to pilon.fasta [pilon] Writing NODE_3662_length_760_cov_2.143975:1-760 changes to pilon.changes [pilon] Writing updated NODE_3662_length_760_cov_2.143975_pilon to pilon.fasta [pilon] Writing NODE_3663_length_760_cov_1.809077:1-760 changes to pilon.changes [pilon] Writing updated NODE_3663_length_760_cov_1.809077_pilon to pilon.fasta [pilon] Writing NODE_3664_length_759_cov_70.109718:1-759 changes to pilon.changes [pilon] Writing updated NODE_3664_length_759_cov_70.109718_pilon to pilon.fasta [pilon] Writing NODE_3665_length_759_cov_53.313480:1-759 changes to pilon.changes [pilon] Writing updated NODE_3665_length_759_cov_53.313480_pilon to pilon.fasta [pilon] Writing NODE_3666_length_759_cov_31.177116:1-759 changes to pilon.changes [pilon] Writing updated NODE_3666_length_759_cov_31.177116_pilon to pilon.fasta [pilon] Writing NODE_3667_length_759_cov_20.681818:1-759 changes to pilon.changes [pilon] Writing updated NODE_3667_length_759_cov_20.681818_pilon to pilon.fasta [pilon] Writing NODE_3668_length_759_cov_20.457680:1-759 changes to pilon.changes [pilon] Writing updated NODE_3668_length_759_cov_20.457680_pilon to pilon.fasta [pilon] Writing NODE_3669_length_759_cov_18.896552:1-759 changes to pilon.changes [pilon] Writing updated NODE_3669_length_759_cov_18.896552_pilon to pilon.fasta [pilon] Writing NODE_3670_length_759_cov_17.619122:1-759 changes to pilon.changes [pilon] Writing updated NODE_3670_length_759_cov_17.619122_pilon to pilon.fasta [pilon] Writing NODE_3671_length_759_cov_16.920063:1-759 changes to pilon.changes [pilon] Writing updated NODE_3671_length_759_cov_16.920063_pilon to pilon.fasta [pilon] Writing NODE_3672_length_759_cov_2.700627:1-759 changes to pilon.changes [pilon] Writing updated NODE_3672_length_759_cov_2.700627_pilon to pilon.fasta [pilon] Writing NODE_3673_length_759_cov_2.449843:1-759 changes to pilon.changes [pilon] Writing updated NODE_3673_length_759_cov_2.449843_pilon to pilon.fasta [pilon] Writing NODE_3674_length_759_cov_1.362069:1-759 changes to pilon.changes [pilon] Writing updated NODE_3674_length_759_cov_1.362069_pilon to pilon.fasta [pilon] Writing NODE_3675_length_759_cov_1.355799:1-759 changes to pilon.changes [pilon] Writing updated NODE_3675_length_759_cov_1.355799_pilon to pilon.fasta [pilon] Writing NODE_3676_length_758_cov_21.095761:1-758 changes to pilon.changes [pilon] Writing updated NODE_3676_length_758_cov_21.095761_pilon to pilon.fasta [pilon] Writing NODE_3677_length_758_cov_21.073783:1-758 changes to pilon.changes [pilon] Writing updated NODE_3677_length_758_cov_21.073783_pilon to pilon.fasta [pilon] Writing NODE_3678_length_758_cov_4.248038:1-758 changes to pilon.changes [pilon] Writing updated NODE_3678_length_758_cov_4.248038_pilon to pilon.fasta [pilon] Writing NODE_3679_length_758_cov_1.762951:1-758 changes to pilon.changes [pilon] Writing updated NODE_3679_length_758_cov_1.762951_pilon to pilon.fasta [pilon] Writing NODE_3680_length_758_cov_1.510204:1-758 changes to pilon.changes [pilon] Writing updated NODE_3680_length_758_cov_1.510204_pilon to pilon.fasta [pilon] Writing NODE_3681_length_757_cov_22.338050:1-757 changes to pilon.changes [pilon] Writing updated NODE_3681_length_757_cov_22.338050_pilon to pilon.fasta [pilon] Writing NODE_3682_length_757_cov_19.454403:1-757 changes to pilon.changes [pilon] Writing updated NODE_3682_length_757_cov_19.454403_pilon to pilon.fasta [pilon] Writing NODE_3683_length_757_cov_16.020440:1-757 changes to pilon.changes [pilon] Writing updated NODE_3683_length_757_cov_16.020440_pilon to pilon.fasta [pilon] Writing NODE_3684_length_757_cov_5.872642:1-757 changes to pilon.changes [pilon] Writing updated NODE_3684_length_757_cov_5.872642_pilon to pilon.fasta [pilon] Writing NODE_3685_length_757_cov_1.407233:1-757 changes to pilon.changes [pilon] Writing updated NODE_3685_length_757_cov_1.407233_pilon to pilon.fasta [pilon] Writing NODE_3686_length_756_cov_25.929134:1-756 changes to pilon.changes [pilon] Writing updated NODE_3686_length_756_cov_25.929134_pilon to pilon.fasta [pilon] Writing NODE_3687_length_756_cov_19.233071:1-756 changes to pilon.changes [pilon] Writing updated NODE_3687_length_756_cov_19.233071_pilon to pilon.fasta [pilon] Writing NODE_3688_length_756_cov_12.497638:1-756 changes to pilon.changes [pilon] Writing updated NODE_3688_length_756_cov_12.497638_pilon to pilon.fasta [pilon] Writing NODE_3689_length_756_cov_10.759055:1-756 changes to pilon.changes [pilon] Writing updated NODE_3689_length_756_cov_10.759055_pilon to pilon.fasta [pilon] Writing NODE_3690_length_756_cov_10.272441:1-756 changes to pilon.changes [pilon] Writing updated NODE_3690_length_756_cov_10.272441_pilon to pilon.fasta [pilon] Writing NODE_3691_length_756_cov_0.842520:1-756 changes to pilon.changes [pilon] Writing updated NODE_3691_length_756_cov_0.842520_pilon to pilon.fasta [pilon] Writing NODE_3692_length_755_cov_26.321767:1-755 changes to pilon.changes [pilon] Writing updated NODE_3692_length_755_cov_26.321767_pilon to pilon.fasta [pilon] Writing NODE_3693_length_755_cov_23.878549:1-755 changes to pilon.changes [pilon] Writing updated NODE_3693_length_755_cov_23.878549_pilon to pilon.fasta [pilon] Writing NODE_3694_length_755_cov_20.197161:1-755 changes to pilon.changes [pilon] Writing updated NODE_3694_length_755_cov_20.197161_pilon to pilon.fasta [pilon] Writing NODE_3695_length_755_cov_13.264984:1-755 changes to pilon.changes [pilon] Writing updated NODE_3695_length_755_cov_13.264984_pilon to pilon.fasta [pilon] Writing NODE_3696_length_755_cov_6.326498:1-755 changes to pilon.changes [pilon] Writing updated NODE_3696_length_755_cov_6.326498_pilon to pilon.fasta [pilon] Writing NODE_3697_length_755_cov_0.990536:1-755 changes to pilon.changes [pilon] Writing updated NODE_3697_length_755_cov_0.990536_pilon to pilon.fasta [pilon] Writing NODE_3698_length_754_cov_39.178515:1-754 changes to pilon.changes [pilon] Writing updated NODE_3698_length_754_cov_39.178515_pilon to pilon.fasta [pilon] Writing NODE_3699_length_754_cov_33.047393:1-754 changes to pilon.changes [pilon] Writing updated NODE_3699_length_754_cov_33.047393_pilon to pilon.fasta [pilon] Writing NODE_3700_length_754_cov_28.123223:1-754 changes to pilon.changes [pilon] Writing updated NODE_3700_length_754_cov_28.123223_pilon to pilon.fasta [pilon] Writing NODE_3701_length_754_cov_16.718799:1-754 changes to pilon.changes [pilon] Writing updated NODE_3701_length_754_cov_16.718799_pilon to pilon.fasta [pilon] Writing NODE_3702_length_754_cov_11.159558:1-754 changes to pilon.changes [pilon] Writing updated NODE_3702_length_754_cov_11.159558_pilon to pilon.fasta [pilon] Writing NODE_3703_length_754_cov_6.726698:1-754 changes to pilon.changes [pilon] Writing updated NODE_3703_length_754_cov_6.726698_pilon to pilon.fasta [pilon] Writing NODE_3704_length_754_cov_4.078989:1-754 changes to pilon.changes [pilon] Writing updated NODE_3704_length_754_cov_4.078989_pilon to pilon.fasta [pilon] Writing NODE_3705_length_754_cov_2.067930:1-754 changes to pilon.changes [pilon] Writing updated NODE_3705_length_754_cov_2.067930_pilon to pilon.fasta [pilon] Writing NODE_3706_length_753_cov_26.319620:1-753 changes to pilon.changes [pilon] Writing updated NODE_3706_length_753_cov_26.319620_pilon to pilon.fasta [pilon] Writing NODE_3707_length_753_cov_20.393987:1-753 changes to pilon.changes [pilon] Writing updated NODE_3707_length_753_cov_20.393987_pilon to pilon.fasta [pilon] Writing NODE_3708_length_753_cov_19.329114:1-753 changes to pilon.changes [pilon] Writing updated NODE_3708_length_753_cov_19.329114_pilon to pilon.fasta [pilon] Writing NODE_3709_length_753_cov_17.140823:1-753 changes to pilon.changes [pilon] Writing updated NODE_3709_length_753_cov_17.140823_pilon to pilon.fasta [pilon] Writing NODE_3710_length_753_cov_17.090190:1-753 changes to pilon.changes [pilon] Writing updated NODE_3710_length_753_cov_17.090190_pilon to pilon.fasta [pilon] Writing NODE_3711_length_753_cov_16.856013:1-753 changes to pilon.changes [pilon] Writing updated NODE_3711_length_753_cov_16.856013_pilon to pilon.fasta [pilon] Writing NODE_3712_length_753_cov_15.854430:1-753 changes to pilon.changes [pilon] Writing updated NODE_3712_length_753_cov_15.854430_pilon to pilon.fasta [pilon] Writing NODE_3713_length_753_cov_4.770570:1-753 changes to pilon.changes [pilon] Writing updated NODE_3713_length_753_cov_4.770570_pilon to pilon.fasta [pilon] Writing NODE_3714_length_753_cov_3.262658:1-753 changes to pilon.changes [pilon] Writing updated NODE_3714_length_753_cov_3.262658_pilon to pilon.fasta [pilon] Writing NODE_3715_length_753_cov_3.180380:1-753 changes to pilon.changes [pilon] Writing updated NODE_3715_length_753_cov_3.180380_pilon to pilon.fasta [pilon] Writing NODE_3716_length_753_cov_3.012658:1-753 changes to pilon.changes [pilon] Writing updated NODE_3716_length_753_cov_3.012658_pilon to pilon.fasta [pilon] Writing NODE_3717_length_752_cov_26.717908:1-752 changes to pilon.changes [pilon] Writing updated NODE_3717_length_752_cov_26.717908_pilon to pilon.fasta [pilon] Writing NODE_3718_length_752_cov_24.553090:1-752 changes to pilon.changes [pilon] Writing updated NODE_3718_length_752_cov_24.553090_pilon to pilon.fasta [pilon] Writing NODE_3719_length_752_cov_13.828843:1-752 changes to pilon.changes [pilon] Writing updated NODE_3719_length_752_cov_13.828843_pilon to pilon.fasta [pilon] Writing NODE_3720_length_752_cov_10.576862:1-752 changes to pilon.changes [pilon] Writing updated NODE_3720_length_752_cov_10.576862_pilon to pilon.fasta [pilon] Writing NODE_3721_length_752_cov_3.662441:1-752 changes to pilon.changes [pilon] Writing updated NODE_3721_length_752_cov_3.662441_pilon to pilon.fasta [pilon] Writing NODE_3722_length_752_cov_1.763867:1-752 changes to pilon.changes [pilon] Writing updated NODE_3722_length_752_cov_1.763867_pilon to pilon.fasta [pilon] Writing NODE_3723_length_751_cov_41.715873:1-751 changes to pilon.changes [pilon] Writing updated NODE_3723_length_751_cov_41.715873_pilon to pilon.fasta [pilon] Writing NODE_3724_length_751_cov_27.877778:1-751 changes to pilon.changes [pilon] Writing updated NODE_3724_length_751_cov_27.877778_pilon to pilon.fasta [pilon] Writing NODE_3725_length_751_cov_24.771429:1-751 changes to pilon.changes [pilon] Writing updated NODE_3725_length_751_cov_24.771429_pilon to pilon.fasta [pilon] Writing NODE_3726_length_751_cov_12.442857:1-751 changes to pilon.changes [pilon] Writing updated NODE_3726_length_751_cov_12.442857_pilon to pilon.fasta [pilon] Writing NODE_3727_length_751_cov_12.030159:1-751 changes to pilon.changes [pilon] Writing updated NODE_3727_length_751_cov_12.030159_pilon to pilon.fasta [pilon] Writing NODE_3728_length_751_cov_1.198413:1-751 changes to pilon.changes [pilon] Writing updated NODE_3728_length_751_cov_1.198413_pilon to pilon.fasta [pilon] Writing NODE_3729_length_751_cov_1.187302:1-751 changes to pilon.changes [pilon] Writing updated NODE_3729_length_751_cov_1.187302_pilon to pilon.fasta [pilon] Writing NODE_3730_length_751_cov_1.047619:1-751 changes to pilon.changes [pilon] Writing updated NODE_3730_length_751_cov_1.047619_pilon to pilon.fasta [pilon] Writing NODE_3731_length_750_cov_28.100159:1-750 changes to pilon.changes [pilon] Writing updated NODE_3731_length_750_cov_28.100159_pilon to pilon.fasta [pilon] Writing NODE_3732_length_750_cov_23.890302:1-750 changes to pilon.changes [pilon] Writing updated NODE_3732_length_750_cov_23.890302_pilon to pilon.fasta [pilon] Writing NODE_3733_length_750_cov_18.882353:1-750 changes to pilon.changes [pilon] Writing updated NODE_3733_length_750_cov_18.882353_pilon to pilon.fasta [pilon] Writing NODE_3734_length_750_cov_17.688394:1-750 changes to pilon.changes [pilon] Writing updated NODE_3734_length_750_cov_17.688394_pilon to pilon.fasta [pilon] Writing NODE_3735_length_750_cov_9.930048:1-750 changes to pilon.changes [pilon] Writing updated NODE_3735_length_750_cov_9.930048_pilon to pilon.fasta [pilon] Writing NODE_3736_length_750_cov_6.310016:1-750 changes to pilon.changes [pilon] Writing updated NODE_3736_length_750_cov_6.310016_pilon to pilon.fasta [pilon] Writing NODE_3737_length_750_cov_5.071542:1-750 changes to pilon.changes [pilon] Writing updated NODE_3737_length_750_cov_5.071542_pilon to pilon.fasta [pilon] Writing NODE_3738_length_750_cov_2.696343:1-750 changes to pilon.changes [pilon] Writing updated NODE_3738_length_750_cov_2.696343_pilon to pilon.fasta [pilon] Writing NODE_3739_length_749_cov_54.121019:1-749 changes to pilon.changes [pilon] Writing updated NODE_3739_length_749_cov_54.121019_pilon to pilon.fasta [pilon] Writing NODE_3740_length_749_cov_25.754777:1-749 changes to pilon.changes [pilon] Writing updated NODE_3740_length_749_cov_25.754777_pilon to pilon.fasta [pilon] Writing NODE_3741_length_749_cov_25.288217:1-749 changes to pilon.changes [pilon] Writing updated NODE_3741_length_749_cov_25.288217_pilon to pilon.fasta [pilon] Writing NODE_3742_length_749_cov_13.420382:1-749 changes to pilon.changes [pilon] Writing updated NODE_3742_length_749_cov_13.420382_pilon to pilon.fasta [pilon] Writing NODE_3743_length_749_cov_3.888535:1-749 changes to pilon.changes [pilon] Writing updated NODE_3743_length_749_cov_3.888535_pilon to pilon.fasta [pilon] Writing NODE_3744_length_749_cov_0.598726:1-749 changes to pilon.changes [pilon] Writing updated NODE_3744_length_749_cov_0.598726_pilon to pilon.fasta [pilon] Writing NODE_3745_length_748_cov_12.499203:1-748 changes to pilon.changes [pilon] Writing updated NODE_3745_length_748_cov_12.499203_pilon to pilon.fasta [pilon] Writing NODE_3746_length_748_cov_6.172249:1-748 changes to pilon.changes [pilon] Writing updated NODE_3746_length_748_cov_6.172249_pilon to pilon.fasta [pilon] Writing NODE_3747_length_748_cov_3.223285:1-748 changes to pilon.changes [pilon] Writing updated NODE_3747_length_748_cov_3.223285_pilon to pilon.fasta [pilon] Writing NODE_3748_length_747_cov_29.263578:1-747 changes to pilon.changes [pilon] Writing updated NODE_3748_length_747_cov_29.263578_pilon to pilon.fasta [pilon] Writing NODE_3749_length_747_cov_19.399361:1-747 changes to pilon.changes [pilon] Writing updated NODE_3749_length_747_cov_19.399361_pilon to pilon.fasta [pilon] Writing NODE_3750_length_747_cov_17.353035:1-747 changes to pilon.changes [pilon] Writing updated NODE_3750_length_747_cov_17.353035_pilon to pilon.fasta [pilon] Writing NODE_3751_length_747_cov_17.006390:1-747 changes to pilon.changes [pilon] Writing updated NODE_3751_length_747_cov_17.006390_pilon to pilon.fasta [pilon] Writing NODE_3752_length_747_cov_10.594249:1-747 changes to pilon.changes [pilon] Writing updated NODE_3752_length_747_cov_10.594249_pilon to pilon.fasta [pilon] Writing NODE_3753_length_747_cov_9.549521:1-747 changes to pilon.changes [pilon] Writing updated NODE_3753_length_747_cov_9.549521_pilon to pilon.fasta [pilon] Writing NODE_3754_length_747_cov_8.669329:1-747 changes to pilon.changes [pilon] Writing updated NODE_3754_length_747_cov_8.669329_pilon to pilon.fasta [pilon] Writing NODE_3755_length_747_cov_5.765176:1-747 changes to pilon.changes [pilon] Writing updated NODE_3755_length_747_cov_5.765176_pilon to pilon.fasta [pilon] Writing NODE_3756_length_747_cov_2.137380:1-747 changes to pilon.changes [pilon] Writing updated NODE_3756_length_747_cov_2.137380_pilon to pilon.fasta [pilon] Writing NODE_3757_length_747_cov_1.420128:1-747 changes to pilon.changes [pilon] Writing updated NODE_3757_length_747_cov_1.420128_pilon to pilon.fasta [pilon] Writing NODE_3758_length_746_cov_18.753600:1-746 changes to pilon.changes [pilon] Writing updated NODE_3758_length_746_cov_18.753600_pilon to pilon.fasta [pilon] Writing NODE_3759_length_746_cov_7.236800:1-746 changes to pilon.changes [pilon] Writing updated NODE_3759_length_746_cov_7.236800_pilon to pilon.fasta [pilon] Writing NODE_3760_length_746_cov_2.977600:1-746 changes to pilon.changes [pilon] Writing updated NODE_3760_length_746_cov_2.977600_pilon to pilon.fasta [pilon] Writing NODE_3761_length_746_cov_1.819200:1-746 changes to pilon.changes [pilon] Writing updated NODE_3761_length_746_cov_1.819200_pilon to pilon.fasta [pilon] Writing NODE_3762_length_746_cov_1.771200:1-746 changes to pilon.changes [pilon] Writing updated NODE_3762_length_746_cov_1.771200_pilon to pilon.fasta [pilon] Writing NODE_3763_length_745_cov_39.366987:1-745 changes to pilon.changes [pilon] Writing updated NODE_3763_length_745_cov_39.366987_pilon to pilon.fasta [pilon] Writing NODE_3764_length_745_cov_33.275641:1-745 changes to pilon.changes [pilon] Writing updated NODE_3764_length_745_cov_33.275641_pilon to pilon.fasta [pilon] Writing NODE_3765_length_745_cov_28.849359:1-745 changes to pilon.changes [pilon] Writing updated NODE_3765_length_745_cov_28.849359_pilon to pilon.fasta [pilon] Writing NODE_3766_length_745_cov_26.866987:1-745 changes to pilon.changes [pilon] Writing updated NODE_3766_length_745_cov_26.866987_pilon to pilon.fasta [pilon] Writing NODE_3767_length_745_cov_12.693910:1-745 changes to pilon.changes [pilon] Writing updated NODE_3767_length_745_cov_12.693910_pilon to pilon.fasta [pilon] Writing NODE_3768_length_745_cov_2.727564:1-745 changes to pilon.changes [pilon] Writing updated NODE_3768_length_745_cov_2.727564_pilon to pilon.fasta [pilon] Writing NODE_3769_length_745_cov_0.349359:1-745 changes to pilon.changes [pilon] Writing updated NODE_3769_length_745_cov_0.349359_pilon to pilon.fasta [pilon] Writing NODE_3770_length_744_cov_41.467095:1-744 changes to pilon.changes [pilon] Writing updated NODE_3770_length_744_cov_41.467095_pilon to pilon.fasta [pilon] Writing NODE_3771_length_744_cov_26.858748:1-744 changes to pilon.changes [pilon] Writing updated NODE_3771_length_744_cov_26.858748_pilon to pilon.fasta [pilon] Writing NODE_3772_length_744_cov_26.215088:1-744 changes to pilon.changes [pilon] Writing updated NODE_3772_length_744_cov_26.215088_pilon to pilon.fasta [pilon] Writing NODE_3773_length_744_cov_11.300161:1-744 changes to pilon.changes [pilon] Writing updated NODE_3773_length_744_cov_11.300161_pilon to pilon.fasta [pilon] Writing NODE_3774_length_744_cov_3.221509:1-744 changes to pilon.changes [pilon] Writing updated NODE_3774_length_744_cov_3.221509_pilon to pilon.fasta [pilon] Writing NODE_3775_length_744_cov_2.399679:1-744 changes to pilon.changes [pilon] Writing updated NODE_3775_length_744_cov_2.399679_pilon to pilon.fasta [pilon] Writing NODE_3776_length_744_cov_2.134831:1-744 changes to pilon.changes [pilon] Writing updated NODE_3776_length_744_cov_2.134831_pilon to pilon.fasta [pilon] Writing NODE_3777_length_743_cov_44.331190:1-743 changes to pilon.changes [pilon] Writing updated NODE_3777_length_743_cov_44.331190_pilon to pilon.fasta [pilon] Writing NODE_3778_length_743_cov_40.993569:1-743 changes to pilon.changes [pilon] Writing updated NODE_3778_length_743_cov_40.993569_pilon to pilon.fasta [pilon] Writing NODE_3779_length_743_cov_15.852090:1-743 changes to pilon.changes [pilon] Writing updated NODE_3779_length_743_cov_15.852090_pilon to pilon.fasta [pilon] Writing NODE_3780_length_743_cov_14.538585:1-743 changes to pilon.changes [pilon] Writing updated NODE_3780_length_743_cov_14.538585_pilon to pilon.fasta [pilon] Writing NODE_3781_length_743_cov_5.176849:1-743 changes to pilon.changes [pilon] Writing updated NODE_3781_length_743_cov_5.176849_pilon to pilon.fasta [pilon] Writing NODE_3782_length_743_cov_4.737942:1-743 changes to pilon.changes [pilon] Writing updated NODE_3782_length_743_cov_4.737942_pilon to pilon.fasta [pilon] Writing NODE_3783_length_743_cov_3.300643:1-743 changes to pilon.changes [pilon] Writing updated NODE_3783_length_743_cov_3.300643_pilon to pilon.fasta [pilon] Writing NODE_3784_length_743_cov_2.310289:1-743 changes to pilon.changes [pilon] Writing updated NODE_3784_length_743_cov_2.310289_pilon to pilon.fasta [pilon] Writing NODE_3785_length_742_cov_51.028986:1-742 changes to pilon.changes [pilon] Writing updated NODE_3785_length_742_cov_51.028986_pilon to pilon.fasta [pilon] Writing NODE_3786_length_742_cov_19.536232:1-742 changes to pilon.changes [pilon] Writing updated NODE_3786_length_742_cov_19.536232_pilon to pilon.fasta [pilon] Writing NODE_3787_length_742_cov_17.199678:1-742 changes to pilon.changes [pilon] Writing updated NODE_3787_length_742_cov_17.199678_pilon to pilon.fasta [pilon] Writing NODE_3788_length_742_cov_7.011272:1-742 changes to pilon.changes [pilon] Writing updated NODE_3788_length_742_cov_7.011272_pilon to pilon.fasta [pilon] Writing NODE_3789_length_742_cov_2.507246:1-742 changes to pilon.changes [pilon] Writing updated NODE_3789_length_742_cov_2.507246_pilon to pilon.fasta [pilon] Writing NODE_3790_length_742_cov_1.243156:1-742 changes to pilon.changes [pilon] Writing updated NODE_3790_length_742_cov_1.243156_pilon to pilon.fasta [pilon] Writing NODE_3791_length_741_cov_24.312903:1-741 changes to pilon.changes [pilon] Writing updated NODE_3791_length_741_cov_24.312903_pilon to pilon.fasta [pilon] Writing NODE_3792_length_741_cov_21.461290:1-741 changes to pilon.changes [pilon] Writing updated NODE_3792_length_741_cov_21.461290_pilon to pilon.fasta [pilon] Writing NODE_3793_length_741_cov_18.598387:1-741 changes to pilon.changes [pilon] Writing updated NODE_3793_length_741_cov_18.598387_pilon to pilon.fasta [pilon] Writing NODE_3794_length_741_cov_14.970968:1-741 changes to pilon.changes [pilon] Writing updated NODE_3794_length_741_cov_14.970968_pilon to pilon.fasta [pilon] Writing NODE_3795_length_741_cov_14.419355:1-741 changes to pilon.changes [pilon] Writing updated NODE_3795_length_741_cov_14.419355_pilon to pilon.fasta [pilon] Writing NODE_3796_length_741_cov_14.112903:1-741 changes to pilon.changes [pilon] Writing updated NODE_3796_length_741_cov_14.112903_pilon to pilon.fasta [pilon] Writing NODE_3797_length_741_cov_13.251613:1-741 changes to pilon.changes [pilon] Writing updated NODE_3797_length_741_cov_13.251613_pilon to pilon.fasta [pilon] Writing NODE_3798_length_741_cov_6.175806:1-741 changes to pilon.changes [pilon] Writing updated NODE_3798_length_741_cov_6.175806_pilon to pilon.fasta [pilon] Writing NODE_3799_length_741_cov_2.122581:1-741 changes to pilon.changes [pilon] Writing updated NODE_3799_length_741_cov_2.122581_pilon to pilon.fasta [pilon] Writing NODE_3800_length_740_cov_44.063005:1-740 changes to pilon.changes [pilon] Writing updated NODE_3800_length_740_cov_44.063005_pilon to pilon.fasta [pilon] Writing NODE_3801_length_740_cov_36.229402:1-740 changes to pilon.changes [pilon] Writing updated NODE_3801_length_740_cov_36.229402_pilon to pilon.fasta [pilon] Writing NODE_3802_length_740_cov_26.164782:1-740 changes to pilon.changes [pilon] Writing updated NODE_3802_length_740_cov_26.164782_pilon to pilon.fasta [pilon] Writing NODE_3803_length_740_cov_20.035541:1-740 changes to pilon.changes [pilon] Writing updated NODE_3803_length_740_cov_20.035541_pilon to pilon.fasta [pilon] Writing NODE_3804_length_740_cov_8.137318:1-740 changes to pilon.changes [pilon] Writing updated NODE_3804_length_740_cov_8.137318_pilon to pilon.fasta [pilon] Writing NODE_3805_length_740_cov_2.920840:1-740 changes to pilon.changes [pilon] Writing updated NODE_3805_length_740_cov_2.920840_pilon to pilon.fasta [pilon] Writing NODE_3806_length_740_cov_2.093700:1-740 changes to pilon.changes [pilon] Writing updated NODE_3806_length_740_cov_2.093700_pilon to pilon.fasta [pilon] Writing NODE_3807_length_740_cov_1.856220:1-740 changes to pilon.changes [pilon] Writing updated NODE_3807_length_740_cov_1.856220_pilon to pilon.fasta [pilon] Writing NODE_3808_length_740_cov_1.621971:1-740 changes to pilon.changes [pilon] Writing updated NODE_3808_length_740_cov_1.621971_pilon to pilon.fasta [pilon] Writing NODE_3809_length_739_cov_43.477346:1-739 changes to pilon.changes [pilon] Writing updated NODE_3809_length_739_cov_43.477346_pilon to pilon.fasta [pilon] Writing NODE_3810_length_739_cov_20.058252:1-739 changes to pilon.changes [pilon] Writing updated NODE_3810_length_739_cov_20.058252_pilon to pilon.fasta [pilon] Writing NODE_3811_length_739_cov_18.689320:1-739 changes to pilon.changes [pilon] Writing updated NODE_3811_length_739_cov_18.689320_pilon to pilon.fasta [pilon] Writing NODE_3812_length_739_cov_15.915858:1-739 changes to pilon.changes [pilon] Writing updated NODE_3812_length_739_cov_15.915858_pilon to pilon.fasta [pilon] Writing NODE_3813_length_739_cov_15.292880:1-739 changes to pilon.changes [pilon] Writing updated NODE_3813_length_739_cov_15.292880_pilon to pilon.fasta [pilon] Writing NODE_3814_length_739_cov_14.012945:1-739 changes to pilon.changes [pilon] Writing updated NODE_3814_length_739_cov_14.012945_pilon to pilon.fasta [pilon] Writing NODE_3815_length_739_cov_13.373786:1-739 changes to pilon.changes [pilon] Writing updated NODE_3815_length_739_cov_13.373786_pilon to pilon.fasta [pilon] Writing NODE_3816_length_738_cov_46.724473:1-738 changes to pilon.changes [pilon] Writing updated NODE_3816_length_738_cov_46.724473_pilon to pilon.fasta [pilon] Writing NODE_3817_length_738_cov_27.016207:1-738 changes to pilon.changes [pilon] Writing updated NODE_3817_length_738_cov_27.016207_pilon to pilon.fasta [pilon] Writing NODE_3818_length_738_cov_26.701783:1-738 changes to pilon.changes [pilon] Writing updated NODE_3818_length_738_cov_26.701783_pilon to pilon.fasta [pilon] Writing NODE_3819_length_738_cov_25.823339:1-738 changes to pilon.changes [pilon] Writing updated NODE_3819_length_738_cov_25.823339_pilon to pilon.fasta [pilon] Writing NODE_3820_length_738_cov_21.270665:1-738 changes to pilon.changes [pilon] Writing updated NODE_3820_length_738_cov_21.270665_pilon to pilon.fasta [pilon] Writing NODE_3821_length_738_cov_18.742301:1-738 changes to pilon.changes [pilon] Writing updated NODE_3821_length_738_cov_18.742301_pilon to pilon.fasta [pilon] Writing NODE_3822_length_738_cov_17.132901:1-738 changes to pilon.changes [pilon] Writing updated NODE_3822_length_738_cov_17.132901_pilon to pilon.fasta [pilon] Writing NODE_3823_length_738_cov_14.085900:1-738 changes to pilon.changes [pilon] Writing updated NODE_3823_length_738_cov_14.085900_pilon to pilon.fasta [pilon] Writing NODE_3824_length_738_cov_9.703404:1-738 changes to pilon.changes [pilon] Writing updated NODE_3824_length_738_cov_9.703404_pilon to pilon.fasta [pilon] Writing NODE_3825_length_738_cov_6.773096:1-738 changes to pilon.changes [pilon] Writing updated NODE_3825_length_738_cov_6.773096_pilon to pilon.fasta [pilon] Writing NODE_3826_length_738_cov_5.940032:1-738 changes to pilon.changes [pilon] Writing updated NODE_3826_length_738_cov_5.940032_pilon to pilon.fasta [pilon] Writing NODE_3827_length_738_cov_3.581848:1-738 changes to pilon.changes [pilon] Writing updated NODE_3827_length_738_cov_3.581848_pilon to pilon.fasta [pilon] Writing NODE_3828_length_738_cov_2.878444:1-738 changes to pilon.changes [pilon] Writing updated NODE_3828_length_738_cov_2.878444_pilon to pilon.fasta [pilon] Writing NODE_3829_length_738_cov_1.136143:1-738 changes to pilon.changes [pilon] Writing updated NODE_3829_length_738_cov_1.136143_pilon to pilon.fasta [pilon] Writing NODE_3830_length_737_cov_19.303571:1-737 changes to pilon.changes [pilon] Writing updated NODE_3830_length_737_cov_19.303571_pilon to pilon.fasta [pilon] Writing NODE_3831_length_737_cov_1.459416:1-737 changes to pilon.changes [pilon] Writing updated NODE_3831_length_737_cov_1.459416_pilon to pilon.fasta [pilon] Writing NODE_3832_length_736_cov_29.891057:1-736 changes to pilon.changes [pilon] Writing updated NODE_3832_length_736_cov_29.891057_pilon to pilon.fasta [pilon] Writing NODE_3833_length_736_cov_27.806504:1-736 changes to pilon.changes [pilon] Writing updated NODE_3833_length_736_cov_27.806504_pilon to pilon.fasta [pilon] Writing NODE_3834_length_736_cov_19.471545:1-736 changes to pilon.changes [pilon] Writing updated NODE_3834_length_736_cov_19.471545_pilon to pilon.fasta [pilon] Writing NODE_3835_length_736_cov_9.899187:1-736 changes to pilon.changes [pilon] Writing updated NODE_3835_length_736_cov_9.899187_pilon to pilon.fasta [pilon] Writing NODE_3836_length_736_cov_2.343089:1-736 changes to pilon.changes [pilon] Writing updated NODE_3836_length_736_cov_2.343089_pilon to pilon.fasta [pilon] Writing NODE_3837_length_736_cov_0.934959:1-736 changes to pilon.changes [pilon] Writing updated NODE_3837_length_736_cov_0.934959_pilon to pilon.fasta [pilon] Writing NODE_3838_length_735_cov_31.034202:1-735 changes to pilon.changes [pilon] Writing updated NODE_3838_length_735_cov_31.034202_pilon to pilon.fasta [pilon] Writing NODE_3839_length_735_cov_30.819218:1-735 changes to pilon.changes [pilon] Writing updated NODE_3839_length_735_cov_30.819218_pilon to pilon.fasta [pilon] Writing NODE_3840_length_735_cov_24.506515:1-735 changes to pilon.changes [pilon] Writing updated NODE_3840_length_735_cov_24.506515_pilon to pilon.fasta [pilon] Writing NODE_3841_length_735_cov_17.094463:1-735 changes to pilon.changes [pilon] Writing updated NODE_3841_length_735_cov_17.094463_pilon to pilon.fasta [pilon] Writing NODE_3842_length_735_cov_16.661238:1-735 changes to pilon.changes [pilon] Writing updated NODE_3842_length_735_cov_16.661238_pilon to pilon.fasta [pilon] Writing NODE_3843_length_735_cov_12.838762:1-735 changes to pilon.changes [pilon] Writing updated NODE_3843_length_735_cov_12.838762_pilon to pilon.fasta [pilon] Writing NODE_3844_length_735_cov_8.983713:1-735 changes to pilon.changes [pilon] Writing updated NODE_3844_length_735_cov_8.983713_pilon to pilon.fasta [pilon] Writing NODE_3845_length_735_cov_2.089577:1-735 changes to pilon.changes [pilon] Writing updated NODE_3845_length_735_cov_2.089577_pilon to pilon.fasta [pilon] Writing NODE_3846_length_735_cov_1.084691:1-735 changes to pilon.changes [pilon] Writing updated NODE_3846_length_735_cov_1.084691_pilon to pilon.fasta [pilon] Writing NODE_3847_length_734_cov_32.820555:1-734 changes to pilon.changes [pilon] Writing updated NODE_3847_length_734_cov_32.820555_pilon to pilon.fasta [pilon] Writing NODE_3848_length_734_cov_27.427406:1-734 changes to pilon.changes [pilon] Writing updated NODE_3848_length_734_cov_27.427406_pilon to pilon.fasta [pilon] Writing NODE_3849_length_734_cov_24.553018:1-734 changes to pilon.changes [pilon] Writing updated NODE_3849_length_734_cov_24.553018_pilon to pilon.fasta [pilon] Writing NODE_3850_length_734_cov_23.548124:1-734 changes to pilon.changes [pilon] Writing updated NODE_3850_length_734_cov_23.548124_pilon to pilon.fasta [pilon] Writing NODE_3851_length_734_cov_14.771615:1-734 changes to pilon.changes [pilon] Writing updated NODE_3851_length_734_cov_14.771615_pilon to pilon.fasta [pilon] Writing NODE_3852_length_734_cov_3.464927:1-734 changes to pilon.changes [pilon] Writing updated NODE_3852_length_734_cov_3.464927_pilon to pilon.fasta [pilon] Writing NODE_3853_length_734_cov_2.450245:1-734 changes to pilon.changes [pilon] Writing updated NODE_3853_length_734_cov_2.450245_pilon to pilon.fasta [pilon] Writing NODE_3854_length_734_cov_2.270799:1-734 changes to pilon.changes [pilon] Writing updated NODE_3854_length_734_cov_2.270799_pilon to pilon.fasta [pilon] Writing NODE_3855_length_734_cov_1.249592:1-734 changes to pilon.changes [pilon] Writing updated NODE_3855_length_734_cov_1.249592_pilon to pilon.fasta [pilon] Writing NODE_3856_length_734_cov_0.704731:1-734 changes to pilon.changes [pilon] Writing updated NODE_3856_length_734_cov_0.704731_pilon to pilon.fasta [pilon] Writing NODE_3857_length_733_cov_9.982026:1-733 changes to pilon.changes [pilon] Writing updated NODE_3857_length_733_cov_9.982026_pilon to pilon.fasta [pilon] Writing NODE_3858_length_733_cov_2.978758:1-733 changes to pilon.changes [pilon] Writing updated NODE_3858_length_733_cov_2.978758_pilon to pilon.fasta [pilon] Writing NODE_3859_length_732_cov_52.998363:1-732 changes to pilon.changes [pilon] Writing updated NODE_3859_length_732_cov_52.998363_pilon to pilon.fasta [pilon] Writing NODE_3860_length_732_cov_43.911620:1-732 changes to pilon.changes [pilon] Writing updated NODE_3860_length_732_cov_43.911620_pilon to pilon.fasta [pilon] Writing NODE_3861_length_732_cov_35.487725:1-732 changes to pilon.changes [pilon] Writing updated NODE_3861_length_732_cov_35.487725_pilon to pilon.fasta [pilon] Writing NODE_3862_length_732_cov_34.541735:1-732 changes to pilon.changes [pilon] Writing updated NODE_3862_length_732_cov_34.541735_pilon to pilon.fasta [pilon] Writing NODE_3863_length_732_cov_26.479542:1-732 changes to pilon.changes [pilon] Writing updated NODE_3863_length_732_cov_26.479542_pilon to pilon.fasta [pilon] Writing NODE_3864_length_732_cov_25.615385:1-732 changes to pilon.changes [pilon] Writing updated NODE_3864_length_732_cov_25.615385_pilon to pilon.fasta [pilon] Writing NODE_3865_length_732_cov_18.256956:1-732 changes to pilon.changes [pilon] Writing updated NODE_3865_length_732_cov_18.256956_pilon to pilon.fasta [pilon] Writing NODE_3866_length_732_cov_17.068740:1-732 changes to pilon.changes [pilon] Writing updated NODE_3866_length_732_cov_17.068740_pilon to pilon.fasta [pilon] Writing NODE_3867_length_732_cov_13.808511:1-732 changes to pilon.changes [pilon] Writing updated NODE_3867_length_732_cov_13.808511_pilon to pilon.fasta [pilon] Writing NODE_3868_length_732_cov_11.490998:1-732 changes to pilon.changes [pilon] Writing updated NODE_3868_length_732_cov_11.490998_pilon to pilon.fasta [pilon] Writing NODE_3869_length_732_cov_11.124386:1-732 changes to pilon.changes [pilon] Writing updated NODE_3869_length_732_cov_11.124386_pilon to pilon.fasta [pilon] Writing NODE_3870_length_732_cov_3.757774:1-732 changes to pilon.changes [pilon] Writing updated NODE_3870_length_732_cov_3.757774_pilon to pilon.fasta [pilon] Writing NODE_3871_length_732_cov_1.836334:1-732 changes to pilon.changes [pilon] Writing updated NODE_3871_length_732_cov_1.836334_pilon to pilon.fasta [pilon] Writing NODE_3872_length_731_cov_23.514754:1-731 changes to pilon.changes [pilon] Writing updated NODE_3872_length_731_cov_23.514754_pilon to pilon.fasta [pilon] Writing NODE_3873_length_731_cov_21.719672:1-731 changes to pilon.changes [pilon] Writing updated NODE_3873_length_731_cov_21.719672_pilon to pilon.fasta [pilon] Writing NODE_3874_length_731_cov_16.101639:1-731 changes to pilon.changes [pilon] Writing updated NODE_3874_length_731_cov_16.101639_pilon to pilon.fasta [pilon] Writing NODE_3875_length_731_cov_6.916393:1-731 changes to pilon.changes [pilon] Writing updated NODE_3875_length_731_cov_6.916393_pilon to pilon.fasta [pilon] Writing NODE_3876_length_731_cov_4.285246:1-731 changes to pilon.changes [pilon] Writing updated NODE_3876_length_731_cov_4.285246_pilon to pilon.fasta [pilon] Writing NODE_3877_length_731_cov_3.480328:1-731 changes to pilon.changes [pilon] Writing updated NODE_3877_length_731_cov_3.480328_pilon to pilon.fasta [pilon] Writing NODE_3878_length_730_cov_35.330049:1-730 changes to pilon.changes [pilon] Writing updated NODE_3878_length_730_cov_35.330049_pilon to pilon.fasta [pilon] Writing NODE_3879_length_730_cov_27.152709:1-730 changes to pilon.changes [pilon] Writing updated NODE_3879_length_730_cov_27.152709_pilon to pilon.fasta [pilon] Writing NODE_3880_length_730_cov_25.704433:1-730 changes to pilon.changes [pilon] Writing updated NODE_3880_length_730_cov_25.704433_pilon to pilon.fasta [pilon] Writing NODE_3881_length_730_cov_23.418719:1-730 changes to pilon.changes [pilon] Writing updated NODE_3881_length_730_cov_23.418719_pilon to pilon.fasta [pilon] Writing NODE_3882_length_730_cov_10.817734:1-730 changes to pilon.changes [pilon] Writing updated NODE_3882_length_730_cov_10.817734_pilon to pilon.fasta [pilon] Writing NODE_3883_length_730_cov_7.756979:1-730 changes to pilon.changes [pilon] Writing updated NODE_3883_length_730_cov_7.756979_pilon to pilon.fasta [pilon] Writing NODE_3884_length_730_cov_4.431856:1-730 changes to pilon.changes [pilon] Writing updated NODE_3884_length_730_cov_4.431856_pilon to pilon.fasta [pilon] Writing NODE_3885_length_730_cov_3.108374:1-730 changes to pilon.changes [pilon] Writing updated NODE_3885_length_730_cov_3.108374_pilon to pilon.fasta [pilon] Writing NODE_3886_length_730_cov_0.898194:1-730 changes to pilon.changes [pilon] Writing updated NODE_3886_length_730_cov_0.898194_pilon to pilon.fasta [pilon] Writing NODE_3887_length_730_cov_0.766831:1-730 changes to pilon.changes [pilon] Writing updated NODE_3887_length_730_cov_0.766831_pilon to pilon.fasta [pilon] Writing NODE_3888_length_729_cov_55.652961:1-729 changes to pilon.changes [pilon] Writing updated NODE_3888_length_729_cov_55.652961_pilon to pilon.fasta [pilon] Writing NODE_3889_length_729_cov_9.228618:1-729 changes to pilon.changes [pilon] Writing updated NODE_3889_length_729_cov_9.228618_pilon to pilon.fasta [pilon] Writing NODE_3890_length_729_cov_5.965461:1-729 changes to pilon.changes [pilon] Writing updated NODE_3890_length_729_cov_5.965461_pilon to pilon.fasta [pilon] Writing NODE_3891_length_729_cov_3.907895:1-729 changes to pilon.changes [pilon] Writing updated NODE_3891_length_729_cov_3.907895_pilon to pilon.fasta [pilon] Writing NODE_3892_length_729_cov_2.993421:1-729 changes to pilon.changes [pilon] Writing updated NODE_3892_length_729_cov_2.993421_pilon to pilon.fasta [pilon] Writing NODE_3893_length_729_cov_2.692434:1-729 changes to pilon.changes [pilon] Writing updated NODE_3893_length_729_cov_2.692434_pilon to pilon.fasta [pilon] Writing NODE_3894_length_729_cov_2.453947:1-729 changes to pilon.changes [pilon] Writing updated NODE_3894_length_729_cov_2.453947_pilon to pilon.fasta [pilon] Writing NODE_3895_length_729_cov_1.562500:1-729 changes to pilon.changes [pilon] Writing updated NODE_3895_length_729_cov_1.562500_pilon to pilon.fasta [pilon] Writing NODE_3896_length_729_cov_1.547697:1-729 changes to pilon.changes [pilon] Writing updated NODE_3896_length_729_cov_1.547697_pilon to pilon.fasta [pilon] Writing NODE_3897_length_728_cov_17.672158:1-728 changes to pilon.changes [pilon] Writing updated NODE_3897_length_728_cov_17.672158_pilon to pilon.fasta [pilon] Writing NODE_3898_length_728_cov_14.304778:1-728 changes to pilon.changes [pilon] Writing updated NODE_3898_length_728_cov_14.304778_pilon to pilon.fasta [pilon] Writing NODE_3899_length_728_cov_13.817133:1-728 changes to pilon.changes [pilon] Writing updated NODE_3899_length_728_cov_13.817133_pilon to pilon.fasta [pilon] Writing NODE_3900_length_728_cov_2.032949:1-728 changes to pilon.changes [pilon] Writing updated NODE_3900_length_728_cov_2.032949_pilon to pilon.fasta [pilon] Writing NODE_3901_length_728_cov_2.032949:1-728 changes to pilon.changes [pilon] Writing updated NODE_3901_length_728_cov_2.032949_pilon to pilon.fasta [pilon] Writing NODE_3902_length_728_cov_1.085667:1-728 changes to pilon.changes [pilon] Writing updated NODE_3902_length_728_cov_1.085667_pilon to pilon.fasta [pilon] Writing NODE_3903_length_727_cov_26.425743:1-727 changes to pilon.changes [pilon] Writing updated NODE_3903_length_727_cov_26.425743_pilon to pilon.fasta [pilon] Writing NODE_3904_length_727_cov_2.691419:1-727 changes to pilon.changes [pilon] Writing updated NODE_3904_length_727_cov_2.691419_pilon to pilon.fasta [pilon] Writing NODE_3905_length_726_cov_35.527273:1-726 changes to pilon.changes [pilon] Writing updated NODE_3905_length_726_cov_35.527273_pilon to pilon.fasta [pilon] Writing NODE_3906_length_726_cov_29.424793:1-726 changes to pilon.changes [pilon] Writing updated NODE_3906_length_726_cov_29.424793_pilon to pilon.fasta [pilon] Writing NODE_3907_length_726_cov_25.552066:1-726 changes to pilon.changes [pilon] Writing updated NODE_3907_length_726_cov_25.552066_pilon to pilon.fasta [pilon] Writing NODE_3908_length_726_cov_20.467769:1-726 changes to pilon.changes [pilon] Writing updated NODE_3908_length_726_cov_20.467769_pilon to pilon.fasta [pilon] Writing NODE_3909_length_726_cov_8.180165:1-726 changes to pilon.changes [pilon] Writing updated NODE_3909_length_726_cov_8.180165_pilon to pilon.fasta [pilon] Writing NODE_3910_length_726_cov_4.327273:1-726 changes to pilon.changes [pilon] Writing updated NODE_3910_length_726_cov_4.327273_pilon to pilon.fasta [pilon] Writing NODE_3911_length_726_cov_3.849587:1-726 changes to pilon.changes [pilon] Writing updated NODE_3911_length_726_cov_3.849587_pilon to pilon.fasta [pilon] Writing NODE_3912_length_726_cov_3.317355:1-726 changes to pilon.changes [pilon] Writing updated NODE_3912_length_726_cov_3.317355_pilon to pilon.fasta [pilon] Writing NODE_3913_length_726_cov_3.042975:1-726 changes to pilon.changes [pilon] Writing updated NODE_3913_length_726_cov_3.042975_pilon to pilon.fasta [pilon] Writing NODE_3914_length_726_cov_2.433058:1-726 changes to pilon.changes [pilon] Writing updated NODE_3914_length_726_cov_2.433058_pilon to pilon.fasta [pilon] Writing NODE_3915_length_726_cov_1.540496:1-726 changes to pilon.changes [pilon] Writing updated NODE_3915_length_726_cov_1.540496_pilon to pilon.fasta [pilon] Writing NODE_3916_length_726_cov_1.406612:1-726 changes to pilon.changes [pilon] Writing updated NODE_3916_length_726_cov_1.406612_pilon to pilon.fasta [pilon] Writing NODE_3917_length_725_cov_41.334437:1-725 changes to pilon.changes [pilon] Writing updated NODE_3917_length_725_cov_41.334437_pilon to pilon.fasta [pilon] Writing NODE_3918_length_725_cov_27.250000:1-725 changes to pilon.changes [pilon] Writing updated NODE_3918_length_725_cov_27.250000_pilon to pilon.fasta [pilon] Writing NODE_3919_length_725_cov_23.612583:1-725 changes to pilon.changes [pilon] Writing updated NODE_3919_length_725_cov_23.612583_pilon to pilon.fasta [pilon] Writing NODE_3920_length_725_cov_8.698675:1-725 changes to pilon.changes [pilon] Writing updated NODE_3920_length_725_cov_8.698675_pilon to pilon.fasta [pilon] Writing NODE_3921_length_725_cov_6.359272:1-725 changes to pilon.changes [pilon] Writing updated NODE_3921_length_725_cov_6.359272_pilon to pilon.fasta [pilon] Writing NODE_3922_length_725_cov_4.937086:1-725 changes to pilon.changes [pilon] Writing updated NODE_3922_length_725_cov_4.937086_pilon to pilon.fasta [pilon] Writing NODE_3923_length_725_cov_1.571192:1-725 changes to pilon.changes [pilon] Writing updated NODE_3923_length_725_cov_1.571192_pilon to pilon.fasta [pilon] Writing NODE_3924_length_724_cov_28.336650:1-724 changes to pilon.changes [pilon] Writing updated NODE_3924_length_724_cov_28.336650_pilon to pilon.fasta [pilon] Writing NODE_3925_length_724_cov_21.200663:1-724 changes to pilon.changes [pilon] Writing updated NODE_3925_length_724_cov_21.200663_pilon to pilon.fasta [pilon] Writing NODE_3926_length_724_cov_19.908789:1-724 changes to pilon.changes [pilon] Writing updated NODE_3926_length_724_cov_19.908789_pilon to pilon.fasta [pilon] Writing NODE_3927_length_724_cov_18.298507:1-724 changes to pilon.changes [pilon] Writing updated NODE_3927_length_724_cov_18.298507_pilon to pilon.fasta [pilon] Writing NODE_3928_length_724_cov_11.021559:1-724 changes to pilon.changes [pilon] Writing updated NODE_3928_length_724_cov_11.021559_pilon to pilon.fasta [pilon] Writing NODE_3929_length_724_cov_9.484245:1-724 changes to pilon.changes [pilon] Writing updated NODE_3929_length_724_cov_9.484245_pilon to pilon.fasta [pilon] Writing NODE_3930_length_724_cov_1.276949:1-724 changes to pilon.changes [pilon] Writing updated NODE_3930_length_724_cov_1.276949_pilon to pilon.fasta [pilon] Writing NODE_3931_length_724_cov_0.723051:1-724 changes to pilon.changes [pilon] Writing updated NODE_3931_length_724_cov_0.723051_pilon to pilon.fasta [pilon] Writing NODE_3932_length_723_cov_25.681063:1-723 changes to pilon.changes [pilon] Writing updated NODE_3932_length_723_cov_25.681063_pilon to pilon.fasta [pilon] Writing NODE_3933_length_723_cov_21.091362:1-723 changes to pilon.changes [pilon] Writing updated NODE_3933_length_723_cov_21.091362_pilon to pilon.fasta [pilon] Writing NODE_3934_length_723_cov_4.448505:1-723 changes to pilon.changes [pilon] Writing updated NODE_3934_length_723_cov_4.448505_pilon to pilon.fasta [pilon] Writing NODE_3935_length_723_cov_2.023256:1-723 changes to pilon.changes [pilon] Writing updated NODE_3935_length_723_cov_2.023256_pilon to pilon.fasta [pilon] Writing NODE_3936_length_723_cov_1.054817:1-723 changes to pilon.changes [pilon] Writing updated NODE_3936_length_723_cov_1.054817_pilon to pilon.fasta [pilon] Writing NODE_3937_length_722_cov_45.638935:1-722 changes to pilon.changes [pilon] Writing updated NODE_3937_length_722_cov_45.638935_pilon to pilon.fasta [pilon] Writing NODE_3938_length_722_cov_30.928453:1-722 changes to pilon.changes [pilon] Writing updated NODE_3938_length_722_cov_30.928453_pilon to pilon.fasta [pilon] Writing NODE_3939_length_722_cov_30.011647:1-722 changes to pilon.changes [pilon] Writing updated NODE_3939_length_722_cov_30.011647_pilon to pilon.fasta [pilon] Writing NODE_3940_length_722_cov_25.542429:1-722 changes to pilon.changes [pilon] Writing updated NODE_3940_length_722_cov_25.542429_pilon to pilon.fasta [pilon] Writing NODE_3941_length_722_cov_21.527454:1-722 changes to pilon.changes [pilon] Writing updated NODE_3941_length_722_cov_21.527454_pilon to pilon.fasta [pilon] Writing NODE_3942_length_722_cov_6.217970:1-722 changes to pilon.changes [pilon] Writing updated NODE_3942_length_722_cov_6.217970_pilon to pilon.fasta [pilon] Writing NODE_3943_length_722_cov_5.008319:1-722 changes to pilon.changes [pilon] Writing updated NODE_3943_length_722_cov_5.008319_pilon to pilon.fasta [pilon] Writing NODE_3944_length_722_cov_1.464226:1-722 changes to pilon.changes [pilon] Writing updated NODE_3944_length_722_cov_1.464226_pilon to pilon.fasta [pilon] Writing NODE_3945_length_721_cov_27.163333:1-721 changes to pilon.changes [pilon] Writing updated NODE_3945_length_721_cov_27.163333_pilon to pilon.fasta [pilon] Writing NODE_3946_length_721_cov_20.825000:1-721 changes to pilon.changes [pilon] Writing updated NODE_3946_length_721_cov_20.825000_pilon to pilon.fasta [pilon] Writing NODE_3947_length_721_cov_2.911667:1-721 changes to pilon.changes [pilon] Writing updated NODE_3947_length_721_cov_2.911667_pilon to pilon.fasta [pilon] Writing NODE_3948_length_721_cov_2.751667:1-721 changes to pilon.changes [pilon] Writing updated NODE_3948_length_721_cov_2.751667_pilon to pilon.fasta [pilon] Writing NODE_3949_length_721_cov_2.566667:1-721 changes to pilon.changes [pilon] Writing updated NODE_3949_length_721_cov_2.566667_pilon to pilon.fasta [pilon] Writing NODE_3950_length_721_cov_1.876667:1-721 changes to pilon.changes [pilon] Writing updated NODE_3950_length_721_cov_1.876667_pilon to pilon.fasta [pilon] Writing NODE_3951_length_721_cov_1.755000:1-721 changes to pilon.changes [pilon] Writing updated NODE_3951_length_721_cov_1.755000_pilon to pilon.fasta [pilon] Writing NODE_3952_length_721_cov_1.716667:1-721 changes to pilon.changes [pilon] Writing updated NODE_3952_length_721_cov_1.716667_pilon to pilon.fasta [pilon] Writing NODE_3953_length_721_cov_1.633333:1-721 changes to pilon.changes [pilon] Writing updated NODE_3953_length_721_cov_1.633333_pilon to pilon.fasta [pilon] Writing NODE_3954_length_721_cov_0.780000:1-721 changes to pilon.changes [pilon] Writing updated NODE_3954_length_721_cov_0.780000_pilon to pilon.fasta [pilon] Writing NODE_3955_length_720_cov_27.532554:1-720 changes to pilon.changes [pilon] Writing updated NODE_3955_length_720_cov_27.532554_pilon to pilon.fasta [pilon] Writing NODE_3956_length_720_cov_24.055092:1-720 changes to pilon.changes [pilon] Writing updated NODE_3956_length_720_cov_24.055092_pilon to pilon.fasta [pilon] Writing NODE_3957_length_720_cov_23.015025:1-720 changes to pilon.changes [pilon] Writing updated NODE_3957_length_720_cov_23.015025_pilon to pilon.fasta [pilon] Writing NODE_3958_length_720_cov_4.662771:1-720 changes to pilon.changes [pilon] Writing updated NODE_3958_length_720_cov_4.662771_pilon to pilon.fasta [pilon] Writing NODE_3959_length_720_cov_3.676127:1-720 changes to pilon.changes [pilon] Writing updated NODE_3959_length_720_cov_3.676127_pilon to pilon.fasta [pilon] Writing NODE_3960_length_720_cov_3.671119:1-720 changes to pilon.changes [pilon] Writing updated NODE_3960_length_720_cov_3.671119_pilon to pilon.fasta [pilon] Writing NODE_3961_length_719_cov_39.530100:1-719 changes to pilon.changes [pilon] Writing updated NODE_3961_length_719_cov_39.530100_pilon to pilon.fasta [pilon] Writing NODE_3962_length_719_cov_34.157191:1-719 changes to pilon.changes [pilon] Writing updated NODE_3962_length_719_cov_34.157191_pilon to pilon.fasta [pilon] Writing NODE_3963_length_719_cov_19.712375:1-719 changes to pilon.changes [pilon] Writing updated NODE_3963_length_719_cov_19.712375_pilon to pilon.fasta [pilon] Writing NODE_3964_length_719_cov_7.886288:1-719 changes to pilon.changes [pilon] Writing updated NODE_3964_length_719_cov_7.886288_pilon to pilon.fasta [pilon] Writing NODE_3965_length_719_cov_4.123746:1-719 changes to pilon.changes [pilon] Writing updated NODE_3965_length_719_cov_4.123746_pilon to pilon.fasta [pilon] Writing NODE_3966_length_719_cov_3.073579:1-719 changes to pilon.changes [pilon] Writing updated NODE_3966_length_719_cov_3.073579_pilon to pilon.fasta [pilon] Writing NODE_3967_length_718_cov_12.562814:1-718 changes to pilon.changes [pilon] Writing updated NODE_3967_length_718_cov_12.562814_pilon to pilon.fasta [pilon] Writing NODE_3968_length_718_cov_10.036851:1-718 changes to pilon.changes [pilon] Writing updated NODE_3968_length_718_cov_10.036851_pilon to pilon.fasta [pilon] Writing NODE_3969_length_718_cov_6.293132:1-718 changes to pilon.changes [pilon] Writing updated NODE_3969_length_718_cov_6.293132_pilon to pilon.fasta [pilon] Writing NODE_3970_length_718_cov_2.480737:1-718 changes to pilon.changes [pilon] Writing updated NODE_3970_length_718_cov_2.480737_pilon to pilon.fasta [pilon] Writing NODE_3971_length_718_cov_2.457286:1-718 changes to pilon.changes [pilon] Writing updated NODE_3971_length_718_cov_2.457286_pilon to pilon.fasta [pilon] Writing NODE_3972_length_718_cov_2.184255:1-718 changes to pilon.changes [pilon] Writing updated NODE_3972_length_718_cov_2.184255_pilon to pilon.fasta [pilon] Writing NODE_3973_length_717_cov_37.115772:1-717 changes to pilon.changes [pilon] Writing updated NODE_3973_length_717_cov_37.115772_pilon to pilon.fasta [pilon] Writing NODE_3974_length_717_cov_30.073826:1-717 changes to pilon.changes [pilon] Writing updated NODE_3974_length_717_cov_30.073826_pilon to pilon.fasta [pilon] Writing NODE_3975_length_717_cov_23.337248:1-717 changes to pilon.changes [pilon] Writing updated NODE_3975_length_717_cov_23.337248_pilon to pilon.fasta [pilon] Writing NODE_3976_length_717_cov_14.557047:1-717 changes to pilon.changes [pilon] Writing updated NODE_3976_length_717_cov_14.557047_pilon to pilon.fasta [pilon] Writing NODE_3977_length_717_cov_3.203020:1-717 changes to pilon.changes [pilon] Writing updated NODE_3977_length_717_cov_3.203020_pilon to pilon.fasta [pilon] Writing NODE_3978_length_717_cov_2.592282:1-717 changes to pilon.changes [pilon] Writing updated NODE_3978_length_717_cov_2.592282_pilon to pilon.fasta [pilon] Writing NODE_3979_length_717_cov_2.270134:1-717 changes to pilon.changes [pilon] Writing updated NODE_3979_length_717_cov_2.270134_pilon to pilon.fasta [pilon] Writing NODE_3980_length_717_cov_2.270134:1-717 changes to pilon.changes [pilon] Writing updated NODE_3980_length_717_cov_2.270134_pilon to pilon.fasta [pilon] Writing NODE_3981_length_717_cov_1.941275:1-717 changes to pilon.changes [pilon] Writing updated NODE_3981_length_717_cov_1.941275_pilon to pilon.fasta [pilon] Writing NODE_3982_length_717_cov_1.760067:1-717 changes to pilon.changes [pilon] Writing updated NODE_3982_length_717_cov_1.760067_pilon to pilon.fasta [pilon] Writing NODE_3983_length_717_cov_0.822148:1-717 changes to pilon.changes [pilon] Writing updated NODE_3983_length_717_cov_0.822148_pilon to pilon.fasta [pilon] Writing NODE_3984_length_716_cov_44.673950:1-716 changes to pilon.changes [pilon] Writing updated NODE_3984_length_716_cov_44.673950_pilon to pilon.fasta [pilon] Writing NODE_3985_length_716_cov_16.578151:1-716 changes to pilon.changes [pilon] Writing updated NODE_3985_length_716_cov_16.578151_pilon to pilon.fasta [pilon] Writing NODE_3986_length_716_cov_15.265546:1-716 changes to pilon.changes [pilon] Writing updated NODE_3986_length_716_cov_15.265546_pilon to pilon.fasta [pilon] Writing NODE_3987_length_716_cov_9.579832:1-716 changes to pilon.changes [pilon] Writing updated NODE_3987_length_716_cov_9.579832_pilon to pilon.fasta [pilon] Writing NODE_3988_length_716_cov_8.137815:1-716 changes to pilon.changes [pilon] Writing updated NODE_3988_length_716_cov_8.137815_pilon to pilon.fasta [pilon] Writing NODE_3989_length_716_cov_6.532773:1-716 changes to pilon.changes [pilon] Writing updated NODE_3989_length_716_cov_6.532773_pilon to pilon.fasta [pilon] Writing NODE_3990_length_716_cov_3.505882:1-716 changes to pilon.changes [pilon] Writing updated NODE_3990_length_716_cov_3.505882_pilon to pilon.fasta [pilon] Writing NODE_3991_length_716_cov_3.403361:1-716 changes to pilon.changes [pilon] Writing updated NODE_3991_length_716_cov_3.403361_pilon to pilon.fasta [pilon] Writing NODE_3992_length_716_cov_2.769748:1-716 changes to pilon.changes [pilon] Writing updated NODE_3992_length_716_cov_2.769748_pilon to pilon.fasta [pilon] Writing NODE_3993_length_716_cov_2.591597:1-716 changes to pilon.changes [pilon] Writing updated NODE_3993_length_716_cov_2.591597_pilon to pilon.fasta [pilon] Writing NODE_3994_length_715_cov_41.360269:1-715 changes to pilon.changes [pilon] Writing updated NODE_3994_length_715_cov_41.360269_pilon to pilon.fasta [pilon] Writing NODE_3995_length_715_cov_34.720539:1-715 changes to pilon.changes [pilon] Writing updated NODE_3995_length_715_cov_34.720539_pilon to pilon.fasta [pilon] Writing NODE_3996_length_715_cov_30.974747:1-715 changes to pilon.changes [pilon] Writing updated NODE_3996_length_715_cov_30.974747_pilon to pilon.fasta [pilon] Writing NODE_3997_length_715_cov_29.361953:1-715 changes to pilon.changes [pilon] Writing updated NODE_3997_length_715_cov_29.361953_pilon to pilon.fasta [pilon] Writing NODE_3998_length_715_cov_28.232323:1-715 changes to pilon.changes [pilon] Writing updated NODE_3998_length_715_cov_28.232323_pilon to pilon.fasta [pilon] Writing NODE_3999_length_715_cov_26.424242:1-715 changes to pilon.changes [pilon] Writing updated NODE_3999_length_715_cov_26.424242_pilon to pilon.fasta [pilon] Writing NODE_4000_length_715_cov_25.370370:1-715 changes to pilon.changes [pilon] Writing updated NODE_4000_length_715_cov_25.370370_pilon to pilon.fasta [pilon] Writing NODE_4001_length_715_cov_19.478114:1-715 changes to pilon.changes [pilon] Writing updated NODE_4001_length_715_cov_19.478114_pilon to pilon.fasta [pilon] Writing NODE_4002_length_715_cov_19.353535:1-715 changes to pilon.changes [pilon] Writing updated NODE_4002_length_715_cov_19.353535_pilon to pilon.fasta [pilon] Writing NODE_4003_length_715_cov_14.705387:1-715 changes to pilon.changes [pilon] Writing updated NODE_4003_length_715_cov_14.705387_pilon to pilon.fasta [pilon] Writing NODE_4004_length_715_cov_14.631313:1-715 changes to pilon.changes [pilon] Writing updated NODE_4004_length_715_cov_14.631313_pilon to pilon.fasta [pilon] Writing NODE_4005_length_715_cov_10.904040:1-715 changes to pilon.changes [pilon] Writing updated NODE_4005_length_715_cov_10.904040_pilon to pilon.fasta [pilon] Writing NODE_4006_length_715_cov_7.132997:1-715 changes to pilon.changes [pilon] Writing updated NODE_4006_length_715_cov_7.132997_pilon to pilon.fasta [pilon] Writing NODE_4007_length_715_cov_2.870370:1-715 changes to pilon.changes [pilon] Writing updated NODE_4007_length_715_cov_2.870370_pilon to pilon.fasta [pilon] Writing NODE_4008_length_715_cov_2.811448:1-715 changes to pilon.changes [pilon] Writing updated NODE_4008_length_715_cov_2.811448_pilon to pilon.fasta [pilon] Writing NODE_4009_length_715_cov_0.818182:1-715 changes to pilon.changes [pilon] Writing updated NODE_4009_length_715_cov_0.818182_pilon to pilon.fasta [pilon] Writing NODE_4010_length_714_cov_62.694772:1-714 changes to pilon.changes [pilon] Writing updated NODE_4010_length_714_cov_62.694772_pilon to pilon.fasta [pilon] Writing NODE_4011_length_714_cov_21.249578:1-714 changes to pilon.changes [pilon] Writing updated NODE_4011_length_714_cov_21.249578_pilon to pilon.fasta [pilon] Writing NODE_4012_length_714_cov_19.758853:1-714 changes to pilon.changes [pilon] Writing updated NODE_4012_length_714_cov_19.758853_pilon to pilon.fasta [pilon] Writing NODE_4013_length_714_cov_17.669477:1-714 changes to pilon.changes [pilon] Writing updated NODE_4013_length_714_cov_17.669477_pilon to pilon.fasta [pilon] Writing NODE_4014_length_714_cov_15.079258:1-714 changes to pilon.changes [pilon] Writing updated NODE_4014_length_714_cov_15.079258_pilon to pilon.fasta [pilon] Writing NODE_4015_length_714_cov_13.726813:1-714 changes to pilon.changes [pilon] Writing updated NODE_4015_length_714_cov_13.726813_pilon to pilon.fasta [pilon] Writing NODE_4016_length_714_cov_5.057336:1-714 changes to pilon.changes [pilon] Writing updated NODE_4016_length_714_cov_5.057336_pilon to pilon.fasta [pilon] Writing NODE_4017_length_714_cov_2.441821:1-714 changes to pilon.changes [pilon] Writing updated NODE_4017_length_714_cov_2.441821_pilon to pilon.fasta [pilon] Writing NODE_4018_length_714_cov_1.917369:1-714 changes to pilon.changes [pilon] Writing updated NODE_4018_length_714_cov_1.917369_pilon to pilon.fasta [pilon] Writing NODE_4019_length_714_cov_0.925801:1-714 changes to pilon.changes [pilon] Writing updated NODE_4019_length_714_cov_0.925801_pilon to pilon.fasta [pilon] Writing NODE_4020_length_713_cov_21.599662:1-713 changes to pilon.changes [pilon] Writing updated NODE_4020_length_713_cov_21.599662_pilon to pilon.fasta [pilon] Writing NODE_4021_length_713_cov_19.574324:1-713 changes to pilon.changes [pilon] Writing updated NODE_4021_length_713_cov_19.574324_pilon to pilon.fasta [pilon] Writing NODE_4022_length_713_cov_19.282095:1-713 changes to pilon.changes [pilon] Writing updated NODE_4022_length_713_cov_19.282095_pilon to pilon.fasta [pilon] Writing NODE_4023_length_713_cov_16.523649:1-713 changes to pilon.changes [pilon] Writing updated NODE_4023_length_713_cov_16.523649_pilon to pilon.fasta [pilon] Writing NODE_4024_length_713_cov_16.089527:1-713 changes to pilon.changes [pilon] Writing updated NODE_4024_length_713_cov_16.089527_pilon to pilon.fasta [pilon] Writing NODE_4025_length_713_cov_14.555743:1-713 changes to pilon.changes [pilon] Writing updated NODE_4025_length_713_cov_14.555743_pilon to pilon.fasta [pilon] Writing NODE_4026_length_713_cov_4.589527:1-713 changes to pilon.changes [pilon] Writing updated NODE_4026_length_713_cov_4.589527_pilon to pilon.fasta [pilon] Writing NODE_4027_length_713_cov_3.739865:1-713 changes to pilon.changes [pilon] Writing updated NODE_4027_length_713_cov_3.739865_pilon to pilon.fasta [pilon] Writing NODE_4028_length_713_cov_3.277027:1-713 changes to pilon.changes [pilon] Writing updated NODE_4028_length_713_cov_3.277027_pilon to pilon.fasta [pilon] Writing NODE_4029_length_713_cov_1.883446:1-713 changes to pilon.changes [pilon] Writing updated NODE_4029_length_713_cov_1.883446_pilon to pilon.fasta [pilon] Writing NODE_4030_length_713_cov_0.831081:1-713 changes to pilon.changes [pilon] Writing updated NODE_4030_length_713_cov_0.831081_pilon to pilon.fasta [pilon] Writing NODE_4031_length_712_cov_4.974619:1-712 changes to pilon.changes [pilon] Writing updated NODE_4031_length_712_cov_4.974619_pilon to pilon.fasta [pilon] Writing NODE_4032_length_712_cov_4.362098:1-712 changes to pilon.changes [pilon] Writing updated NODE_4032_length_712_cov_4.362098_pilon to pilon.fasta [pilon] Writing NODE_4033_length_712_cov_3.042301:1-712 changes to pilon.changes [pilon] Writing updated NODE_4033_length_712_cov_3.042301_pilon to pilon.fasta [pilon] Writing NODE_4034_length_711_cov_32.081356:1-711 changes to pilon.changes [pilon] Writing updated NODE_4034_length_711_cov_32.081356_pilon to pilon.fasta [pilon] Writing NODE_4035_length_711_cov_28.767797:1-711 changes to pilon.changes [pilon] Writing updated NODE_4035_length_711_cov_28.767797_pilon to pilon.fasta [pilon] Writing NODE_4036_length_711_cov_26.854237:1-711 changes to pilon.changes [pilon] Writing updated NODE_4036_length_711_cov_26.854237_pilon to pilon.fasta [pilon] Writing NODE_4037_length_711_cov_26.149153:1-711 changes to pilon.changes [pilon] Writing updated NODE_4037_length_711_cov_26.149153_pilon to pilon.fasta [pilon] Writing NODE_4038_length_711_cov_22.722034:1-711 changes to pilon.changes [pilon] Writing updated NODE_4038_length_711_cov_22.722034_pilon to pilon.fasta [pilon] Writing NODE_4039_length_711_cov_22.613559:1-711 changes to pilon.changes [pilon] Writing updated NODE_4039_length_711_cov_22.613559_pilon to pilon.fasta [pilon] Writing NODE_4040_length_711_cov_18.108475:1-711 changes to pilon.changes [pilon] Writing updated NODE_4040_length_711_cov_18.108475_pilon to pilon.fasta [pilon] Writing NODE_4041_length_711_cov_16.140678:1-711 changes to pilon.changes [pilon] Writing updated NODE_4041_length_711_cov_16.140678_pilon to pilon.fasta [pilon] Writing NODE_4042_length_711_cov_13.269492:1-711 changes to pilon.changes [pilon] Writing updated NODE_4042_length_711_cov_13.269492_pilon to pilon.fasta [pilon] Writing NODE_4043_length_711_cov_2.822034:1-711 changes to pilon.changes [pilon] Writing updated NODE_4043_length_711_cov_2.822034_pilon to pilon.fasta [pilon] Writing NODE_4044_length_711_cov_1.933898:1-711 changes to pilon.changes [pilon] Writing updated NODE_4044_length_711_cov_1.933898_pilon to pilon.fasta [pilon] Writing NODE_4045_length_711_cov_1.196610:1-711 changes to pilon.changes [pilon] Writing updated NODE_4045_length_711_cov_1.196610_pilon to pilon.fasta [pilon] Writing NODE_4046_length_711_cov_0.962712:1-711 changes to pilon.changes [pilon] Writing updated NODE_4046_length_711_cov_0.962712_pilon to pilon.fasta [pilon] Writing NODE_4047_length_710_cov_52.354839:1-710 changes to pilon.changes [pilon] Writing updated NODE_4047_length_710_cov_52.354839_pilon to pilon.fasta [pilon] Writing NODE_4048_length_710_cov_45.847199:1-710 changes to pilon.changes [pilon] Writing updated NODE_4048_length_710_cov_45.847199_pilon to pilon.fasta [pilon] Writing NODE_4049_length_710_cov_30.086587:1-710 changes to pilon.changes [pilon] Writing updated NODE_4049_length_710_cov_30.086587_pilon to pilon.fasta [pilon] Writing NODE_4050_length_710_cov_28.380306:1-710 changes to pilon.changes [pilon] Writing updated NODE_4050_length_710_cov_28.380306_pilon to pilon.fasta [pilon] Writing NODE_4051_length_710_cov_24.164686:1-710 changes to pilon.changes [pilon] Writing updated NODE_4051_length_710_cov_24.164686_pilon to pilon.fasta [pilon] Writing NODE_4052_length_710_cov_20.047538:1-710 changes to pilon.changes [pilon] Writing updated NODE_4052_length_710_cov_20.047538_pilon to pilon.fasta [pilon] Writing NODE_4053_length_710_cov_18.818336:1-710 changes to pilon.changes [pilon] Writing updated NODE_4053_length_710_cov_18.818336_pilon to pilon.fasta [pilon] Writing NODE_4054_length_710_cov_17.774194:1-710 changes to pilon.changes [pilon] Writing updated NODE_4054_length_710_cov_17.774194_pilon to pilon.fasta [pilon] Writing NODE_4055_length_710_cov_15.694397:1-710 changes to pilon.changes [pilon] Writing updated NODE_4055_length_710_cov_15.694397_pilon to pilon.fasta [pilon] Writing NODE_4056_length_710_cov_13.429542:1-710 changes to pilon.changes [pilon] Writing updated NODE_4056_length_710_cov_13.429542_pilon to pilon.fasta [pilon] Writing NODE_4057_length_710_cov_12.774194:1-710 changes to pilon.changes [pilon] Writing updated NODE_4057_length_710_cov_12.774194_pilon to pilon.fasta [pilon] Writing NODE_4058_length_710_cov_12.210526:1-710 changes to pilon.changes [pilon] Writing updated NODE_4058_length_710_cov_12.210526_pilon to pilon.fasta [pilon] Writing NODE_4059_length_710_cov_1.572156:1-710 changes to pilon.changes [pilon] Writing updated NODE_4059_length_710_cov_1.572156_pilon to pilon.fasta [pilon] Writing NODE_4060_length_710_cov_1.455008:1-710 changes to pilon.changes [pilon] Writing updated NODE_4060_length_710_cov_1.455008_pilon to pilon.fasta [pilon] Writing NODE_4061_length_710_cov_1.168081:1-710 changes to pilon.changes [pilon] Writing updated NODE_4061_length_710_cov_1.168081_pilon to pilon.fasta [pilon] Writing NODE_4062_length_709_cov_20.896259:1-709 changes to pilon.changes [pilon] Writing updated NODE_4062_length_709_cov_20.896259_pilon to pilon.fasta [pilon] Writing NODE_4063_length_709_cov_5.608844:1-709 changes to pilon.changes [pilon] Writing updated NODE_4063_length_709_cov_5.608844_pilon to pilon.fasta [pilon] Writing NODE_4064_length_709_cov_2.659864:1-709 changes to pilon.changes [pilon] Writing updated NODE_4064_length_709_cov_2.659864_pilon to pilon.fasta [pilon] Writing NODE_4065_length_709_cov_2.568027:1-709 changes to pilon.changes [pilon] Writing updated NODE_4065_length_709_cov_2.568027_pilon to pilon.fasta [pilon] Writing NODE_4066_length_709_cov_1.916667:1-709 changes to pilon.changes [pilon] Writing updated NODE_4066_length_709_cov_1.916667_pilon to pilon.fasta [pilon] Writing NODE_4067_length_709_cov_1.528912:1-709 changes to pilon.changes [pilon] Writing updated NODE_4067_length_709_cov_1.528912_pilon to pilon.fasta [pilon] Writing NODE_4068_length_709_cov_1.222789:1-709 changes to pilon.changes [pilon] Writing updated NODE_4068_length_709_cov_1.222789_pilon to pilon.fasta [pilon] Writing NODE_4069_length_708_cov_23.930153:1-708 changes to pilon.changes [pilon] Writing updated NODE_4069_length_708_cov_23.930153_pilon to pilon.fasta [pilon] Writing NODE_4070_length_708_cov_21.017036:1-708 changes to pilon.changes [pilon] Writing updated NODE_4070_length_708_cov_21.017036_pilon to pilon.fasta [pilon] Writing NODE_4071_length_708_cov_17.930153:1-708 changes to pilon.changes [pilon] Writing updated NODE_4071_length_708_cov_17.930153_pilon to pilon.fasta [pilon] Writing NODE_4072_length_708_cov_14.626917:1-708 changes to pilon.changes [pilon] Writing updated NODE_4072_length_708_cov_14.626917_pilon to pilon.fasta [pilon] Writing NODE_4073_length_708_cov_13.904600:1-708 changes to pilon.changes [pilon] Writing updated NODE_4073_length_708_cov_13.904600_pilon to pilon.fasta [pilon] Writing NODE_4074_length_708_cov_13.410562:1-708 changes to pilon.changes [pilon] Writing updated NODE_4074_length_708_cov_13.410562_pilon to pilon.fasta [pilon] Writing NODE_4075_length_708_cov_12.632027:1-708 changes to pilon.changes [pilon] Writing updated NODE_4075_length_708_cov_12.632027_pilon to pilon.fasta [pilon] Writing NODE_4076_length_708_cov_12.316865:1-708 changes to pilon.changes [pilon] Writing updated NODE_4076_length_708_cov_12.316865_pilon to pilon.fasta [pilon] Writing NODE_4077_length_708_cov_8.620102:1-708 changes to pilon.changes [pilon] Writing updated NODE_4077_length_708_cov_8.620102_pilon to pilon.fasta [pilon] Writing NODE_4078_length_708_cov_1.713799:1-708 changes to pilon.changes [pilon] Writing updated NODE_4078_length_708_cov_1.713799_pilon to pilon.fasta [pilon] Writing NODE_4079_length_707_cov_24.313993:1-707 changes to pilon.changes [pilon] Writing updated NODE_4079_length_707_cov_24.313993_pilon to pilon.fasta [pilon] Writing NODE_4080_length_707_cov_23.790102:1-707 changes to pilon.changes [pilon] Writing updated NODE_4080_length_707_cov_23.790102_pilon to pilon.fasta [pilon] Writing NODE_4081_length_707_cov_22.761092:1-707 changes to pilon.changes [pilon] Writing updated NODE_4081_length_707_cov_22.761092_pilon to pilon.fasta [pilon] Writing NODE_4082_length_707_cov_22.097270:1-707 changes to pilon.changes [pilon] Writing updated NODE_4082_length_707_cov_22.097270_pilon to pilon.fasta [pilon] Writing NODE_4083_length_707_cov_20.436860:1-707 changes to pilon.changes [pilon] Writing updated NODE_4083_length_707_cov_20.436860_pilon to pilon.fasta [pilon] Writing NODE_4084_length_707_cov_8.755973:1-707 changes to pilon.changes [pilon] Writing updated NODE_4084_length_707_cov_8.755973_pilon to pilon.fasta [pilon] Writing NODE_4085_length_707_cov_3.005119:1-707 changes to pilon.changes [pilon] Writing updated NODE_4085_length_707_cov_3.005119_pilon to pilon.fasta [pilon] Writing NODE_4086_length_707_cov_0.684300:1-707 changes to pilon.changes [pilon] Writing updated NODE_4086_length_707_cov_0.684300_pilon to pilon.fasta [pilon] Writing NODE_4087_length_706_cov_34.076923:1-706 changes to pilon.changes [pilon] Writing updated NODE_4087_length_706_cov_34.076923_pilon to pilon.fasta [pilon] Writing NODE_4088_length_706_cov_16.791453:1-706 changes to pilon.changes [pilon] Writing updated NODE_4088_length_706_cov_16.791453_pilon to pilon.fasta [pilon] Writing NODE_4089_length_706_cov_13.194872:1-706 changes to pilon.changes [pilon] Writing updated NODE_4089_length_706_cov_13.194872_pilon to pilon.fasta [pilon] Writing NODE_4090_length_706_cov_9.191453:1-706 changes to pilon.changes [pilon] Writing updated NODE_4090_length_706_cov_9.191453_pilon to pilon.fasta [pilon] Writing NODE_4091_length_706_cov_7.314530:1-706 changes to pilon.changes [pilon] Writing updated NODE_4091_length_706_cov_7.314530_pilon to pilon.fasta [pilon] Writing NODE_4092_length_706_cov_3.271795:1-706 changes to pilon.changes [pilon] Writing updated NODE_4092_length_706_cov_3.271795_pilon to pilon.fasta [pilon] Writing NODE_4093_length_706_cov_3.128205:1-706 changes to pilon.changes [pilon] Writing updated NODE_4093_length_706_cov_3.128205_pilon to pilon.fasta [pilon] Writing NODE_4094_length_706_cov_2.873504:1-706 changes to pilon.changes [pilon] Writing updated NODE_4094_length_706_cov_2.873504_pilon to pilon.fasta [pilon] Writing NODE_4095_length_706_cov_1.003419:1-706 changes to pilon.changes [pilon] Writing updated NODE_4095_length_706_cov_1.003419_pilon to pilon.fasta [pilon] Writing NODE_4096_length_705_cov_28.125000:1-705 changes to pilon.changes [pilon] Writing updated NODE_4096_length_705_cov_28.125000_pilon to pilon.fasta [pilon] Writing NODE_4097_length_705_cov_19.393836:1-705 changes to pilon.changes [pilon] Writing updated NODE_4097_length_705_cov_19.393836_pilon to pilon.fasta [pilon] Writing NODE_4098_length_705_cov_12.037671:1-705 changes to pilon.changes [pilon] Writing updated NODE_4098_length_705_cov_12.037671_pilon to pilon.fasta [pilon] Writing NODE_4099_length_705_cov_3.046233:1-705 changes to pilon.changes [pilon] Writing updated NODE_4099_length_705_cov_3.046233_pilon to pilon.fasta [pilon] Writing NODE_4100_length_705_cov_2.640411:1-705 changes to pilon.changes [pilon] Writing updated NODE_4100_length_705_cov_2.640411_pilon to pilon.fasta [pilon] Writing NODE_4101_length_705_cov_2.597603:1-705 changes to pilon.changes [pilon] Writing updated NODE_4101_length_705_cov_2.597603_pilon to pilon.fasta [pilon] Writing NODE_4102_length_705_cov_0.395548:1-705 changes to pilon.changes [pilon] Writing updated NODE_4102_length_705_cov_0.395548_pilon to pilon.fasta [pilon] Writing NODE_4103_length_704_cov_67.226415:1-704 changes to pilon.changes [pilon] Writing updated NODE_4103_length_704_cov_67.226415_pilon to pilon.fasta [pilon] Writing NODE_4104_length_704_cov_18.759863:1-704 changes to pilon.changes [pilon] Writing updated NODE_4104_length_704_cov_18.759863_pilon to pilon.fasta [pilon] Writing NODE_4105_length_704_cov_16.859348:1-704 changes to pilon.changes [pilon] Writing updated NODE_4105_length_704_cov_16.859348_pilon to pilon.fasta [pilon] Writing NODE_4106_length_704_cov_13.353345:1-704 changes to pilon.changes [pilon] Writing updated NODE_4106_length_704_cov_13.353345_pilon to pilon.fasta [pilon] Writing NODE_4107_length_704_cov_12.248714:1-704 changes to pilon.changes [pilon] Writing updated NODE_4107_length_704_cov_12.248714_pilon to pilon.fasta [pilon] Writing NODE_4108_length_704_cov_12.190395:1-704 changes to pilon.changes [pilon] Writing updated NODE_4108_length_704_cov_12.190395_pilon to pilon.fasta [pilon] Writing NODE_4109_length_704_cov_11.104631:1-704 changes to pilon.changes [pilon] Writing updated NODE_4109_length_704_cov_11.104631_pilon to pilon.fasta [pilon] Writing NODE_4110_length_704_cov_4.927959:1-704 changes to pilon.changes [pilon] Writing updated NODE_4110_length_704_cov_4.927959_pilon to pilon.fasta [pilon] Writing NODE_4111_length_704_cov_4.113208:1-704 changes to pilon.changes [pilon] Writing updated NODE_4111_length_704_cov_4.113208_pilon to pilon.fasta [pilon] Writing NODE_4112_length_704_cov_3.965695:1-704 changes to pilon.changes [pilon] Writing updated NODE_4112_length_704_cov_3.965695_pilon to pilon.fasta [pilon] Writing NODE_4113_length_704_cov_2.802744:1-704 changes to pilon.changes [pilon] Writing updated NODE_4113_length_704_cov_2.802744_pilon to pilon.fasta [pilon] Writing NODE_4114_length_704_cov_1.699828:1-704 changes to pilon.changes [pilon] Writing updated NODE_4114_length_704_cov_1.699828_pilon to pilon.fasta [pilon] Writing NODE_4115_length_703_cov_31.676976:1-703 changes to pilon.changes [pilon] Writing updated NODE_4115_length_703_cov_31.676976_pilon to pilon.fasta [pilon] Writing NODE_4116_length_703_cov_20.888316:1-703 changes to pilon.changes [pilon] Writing updated NODE_4116_length_703_cov_20.888316_pilon to pilon.fasta [pilon] Writing NODE_4117_length_703_cov_17.814433:1-703 changes to pilon.changes [pilon] Writing updated NODE_4117_length_703_cov_17.814433_pilon to pilon.fasta [pilon] Writing NODE_4118_length_703_cov_12.541237:1-703 changes to pilon.changes [pilon] Writing updated NODE_4118_length_703_cov_12.541237_pilon to pilon.fasta [pilon] Writing NODE_4119_length_703_cov_4.517182:1-703 changes to pilon.changes [pilon] Writing updated NODE_4119_length_703_cov_4.517182_pilon to pilon.fasta [pilon] Writing NODE_4120_length_703_cov_2.221649:1-703 changes to pilon.changes [pilon] Writing updated NODE_4120_length_703_cov_2.221649_pilon to pilon.fasta [pilon] Writing NODE_4121_length_703_cov_1.163230:1-703 changes to pilon.changes [pilon] Writing updated NODE_4121_length_703_cov_1.163230_pilon to pilon.fasta [pilon] Writing NODE_4122_length_703_cov_1.005155:1-703 changes to pilon.changes [pilon] Writing updated NODE_4122_length_703_cov_1.005155_pilon to pilon.fasta [pilon] Writing NODE_4123_length_702_cov_57.834768:1-702 changes to pilon.changes [pilon] Writing updated NODE_4123_length_702_cov_57.834768_pilon to pilon.fasta [pilon] Writing NODE_4124_length_702_cov_18.555938:1-702 changes to pilon.changes [pilon] Writing updated NODE_4124_length_702_cov_18.555938_pilon to pilon.fasta [pilon] Writing NODE_4125_length_702_cov_17.585198:1-702 changes to pilon.changes [pilon] Writing updated NODE_4125_length_702_cov_17.585198_pilon to pilon.fasta [pilon] Writing NODE_4126_length_702_cov_4.760757:1-702 changes to pilon.changes [pilon] Writing updated NODE_4126_length_702_cov_4.760757_pilon to pilon.fasta [pilon] Writing NODE_4127_length_702_cov_3.851979:1-702 changes to pilon.changes [pilon] Writing updated NODE_4127_length_702_cov_3.851979_pilon to pilon.fasta [pilon] Writing NODE_4128_length_702_cov_2.182444:1-702 changes to pilon.changes [pilon] Writing updated NODE_4128_length_702_cov_2.182444_pilon to pilon.fasta [pilon] Writing NODE_4129_length_702_cov_1.690189:1-702 changes to pilon.changes [pilon] Writing updated NODE_4129_length_702_cov_1.690189_pilon to pilon.fasta [pilon] Writing NODE_4130_length_701_cov_6.239655:1-701 changes to pilon.changes [pilon] Writing updated NODE_4130_length_701_cov_6.239655_pilon to pilon.fasta [pilon] Writing NODE_4131_length_701_cov_2.253448:1-701 changes to pilon.changes [pilon] Writing updated NODE_4131_length_701_cov_2.253448_pilon to pilon.fasta [pilon] Writing NODE_4132_length_701_cov_1.865517:1-701 changes to pilon.changes [pilon] Writing updated NODE_4132_length_701_cov_1.865517_pilon to pilon.fasta [pilon] Writing NODE_4133_length_700_cov_17.975820:1-700 changes to pilon.changes [pilon] Writing updated NODE_4133_length_700_cov_17.975820_pilon to pilon.fasta [pilon] Writing NODE_4134_length_700_cov_15.089810:1-700 changes to pilon.changes [pilon] Writing updated NODE_4134_length_700_cov_15.089810_pilon to pilon.fasta [pilon] Writing NODE_4135_length_700_cov_12.720207:1-700 changes to pilon.changes [pilon] Writing updated NODE_4135_length_700_cov_12.720207_pilon to pilon.fasta [pilon] Writing NODE_4136_length_700_cov_2.620035:1-700 changes to pilon.changes [pilon] Writing updated NODE_4136_length_700_cov_2.620035_pilon to pilon.fasta [pilon] Writing NODE_4137_length_700_cov_1.737478:1-700 changes to pilon.changes [pilon] Writing updated NODE_4137_length_700_cov_1.737478_pilon to pilon.fasta [pilon] Writing NODE_4138_length_700_cov_1.461140:1-700 changes to pilon.changes [pilon] Writing updated NODE_4138_length_700_cov_1.461140_pilon to pilon.fasta [pilon] Writing NODE_4139_length_700_cov_1.314335:1-700 changes to pilon.changes [pilon] Writing updated NODE_4139_length_700_cov_1.314335_pilon to pilon.fasta [pilon] Writing NODE_4140_length_700_cov_1.134715:1-700 changes to pilon.changes [pilon] Writing updated NODE_4140_length_700_cov_1.134715_pilon to pilon.fasta [pilon] Writing NODE_4141_length_700_cov_0.799655:1-700 changes to pilon.changes [pilon] Writing updated NODE_4141_length_700_cov_0.799655_pilon to pilon.fasta [pilon] Writing NODE_4142_length_699_cov_34.700692:1-699 changes to pilon.changes [pilon] Writing updated NODE_4142_length_699_cov_34.700692_pilon to pilon.fasta [pilon] Writing NODE_4143_length_699_cov_31.873702:1-699 changes to pilon.changes [pilon] Writing updated NODE_4143_length_699_cov_31.873702_pilon to pilon.fasta [pilon] Writing NODE_4144_length_699_cov_24.588235:1-699 changes to pilon.changes [pilon] Writing updated NODE_4144_length_699_cov_24.588235_pilon to pilon.fasta [pilon] Writing NODE_4145_length_699_cov_15.439446:1-699 changes to pilon.changes [pilon] Writing updated NODE_4145_length_699_cov_15.439446_pilon to pilon.fasta [pilon] Writing NODE_4146_length_699_cov_11.807958:1-699 changes to pilon.changes [pilon] Writing updated NODE_4146_length_699_cov_11.807958_pilon to pilon.fasta [pilon] Writing NODE_4147_length_699_cov_2.664360:1-699 changes to pilon.changes [pilon] Writing updated NODE_4147_length_699_cov_2.664360_pilon to pilon.fasta [pilon] Writing NODE_4148_length_699_cov_2.031142:1-699 changes to pilon.changes [pilon] Writing updated NODE_4148_length_699_cov_2.031142_pilon to pilon.fasta [pilon] Writing NODE_4149_length_699_cov_1.882353:1-699 changes to pilon.changes [pilon] Writing updated NODE_4149_length_699_cov_1.882353_pilon to pilon.fasta [pilon] Writing NODE_4150_length_699_cov_1.429066:1-699 changes to pilon.changes [pilon] Writing updated NODE_4150_length_699_cov_1.429066_pilon to pilon.fasta [pilon] Writing NODE_4151_length_699_cov_1.301038:1-699 changes to pilon.changes [pilon] Writing updated NODE_4151_length_699_cov_1.301038_pilon to pilon.fasta [pilon] Writing NODE_4152_length_699_cov_0.986159:1-699 changes to pilon.changes [pilon] Writing updated NODE_4152_length_699_cov_0.986159_pilon to pilon.fasta [pilon] Writing NODE_4153_length_698_cov_32.010399:1-698 changes to pilon.changes [pilon] Writing updated NODE_4153_length_698_cov_32.010399_pilon to pilon.fasta [pilon] Writing NODE_4154_length_698_cov_28.310225:1-698 changes to pilon.changes [pilon] Writing updated NODE_4154_length_698_cov_28.310225_pilon to pilon.fasta [pilon] Writing NODE_4155_length_698_cov_7.459272:1-698 changes to pilon.changes [pilon] Writing updated NODE_4155_length_698_cov_7.459272_pilon to pilon.fasta [pilon] Writing NODE_4156_length_698_cov_5.124783:1-698 changes to pilon.changes [pilon] Writing updated NODE_4156_length_698_cov_5.124783_pilon to pilon.fasta [pilon] Writing NODE_4157_length_698_cov_2.459272:1-698 changes to pilon.changes [pilon] Writing updated NODE_4157_length_698_cov_2.459272_pilon to pilon.fasta [pilon] Writing NODE_4158_length_698_cov_0.755633:1-698 changes to pilon.changes [pilon] Writing updated NODE_4158_length_698_cov_0.755633_pilon to pilon.fasta [pilon] Writing NODE_4159_length_697_cov_50.034722:1-697 changes to pilon.changes [pilon] Writing updated NODE_4159_length_697_cov_50.034722_pilon to pilon.fasta [pilon] Writing NODE_4160_length_697_cov_45.022569:1-697 changes to pilon.changes [pilon] Writing updated NODE_4160_length_697_cov_45.022569_pilon to pilon.fasta [pilon] Writing NODE_4161_length_697_cov_27.718750:1-697 changes to pilon.changes [pilon] Writing updated NODE_4161_length_697_cov_27.718750_pilon to pilon.fasta [pilon] Writing NODE_4162_length_697_cov_26.175347:1-697 changes to pilon.changes [pilon] Writing updated NODE_4162_length_697_cov_26.175347_pilon to pilon.fasta [pilon] Writing NODE_4163_length_697_cov_24.427083:1-697 changes to pilon.changes [pilon] Writing updated NODE_4163_length_697_cov_24.427083_pilon to pilon.fasta [pilon] Writing NODE_4164_length_697_cov_17.493056:1-697 changes to pilon.changes [pilon] Writing updated NODE_4164_length_697_cov_17.493056_pilon to pilon.fasta [pilon] Writing NODE_4165_length_697_cov_16.984375:1-697 changes to pilon.changes [pilon] Writing updated NODE_4165_length_697_cov_16.984375_pilon to pilon.fasta [pilon] Writing NODE_4166_length_697_cov_16.276042:1-697 changes to pilon.changes [pilon] Writing updated NODE_4166_length_697_cov_16.276042_pilon to pilon.fasta [pilon] Writing NODE_4167_length_697_cov_11.423611:1-697 changes to pilon.changes [pilon] Writing updated NODE_4167_length_697_cov_11.423611_pilon to pilon.fasta [pilon] Writing NODE_4168_length_697_cov_9.875000:1-697 changes to pilon.changes [pilon] Writing updated NODE_4168_length_697_cov_9.875000_pilon to pilon.fasta [pilon] Writing NODE_4169_length_697_cov_3.680556:1-697 changes to pilon.changes [pilon] Writing updated NODE_4169_length_697_cov_3.680556_pilon to pilon.fasta [pilon] Writing NODE_4170_length_697_cov_2.090278:1-697 changes to pilon.changes [pilon] Writing updated NODE_4170_length_697_cov_2.090278_pilon to pilon.fasta [pilon] Writing NODE_4171_length_697_cov_0.699653:1-697 changes to pilon.changes [pilon] Writing updated NODE_4171_length_697_cov_0.699653_pilon to pilon.fasta [pilon] Writing NODE_4172_length_696_cov_50.606957:1-696 changes to pilon.changes [pilon] Writing updated NODE_4172_length_696_cov_50.606957_pilon to pilon.fasta [pilon] Writing NODE_4173_length_696_cov_34.563478:1-696 changes to pilon.changes [pilon] Writing updated NODE_4173_length_696_cov_34.563478_pilon to pilon.fasta [pilon] Writing NODE_4174_length_696_cov_22.735652:1-696 changes to pilon.changes [pilon] Writing updated NODE_4174_length_696_cov_22.735652_pilon to pilon.fasta [pilon] Writing NODE_4175_length_696_cov_21.617391:1-696 changes to pilon.changes [pilon] Writing updated NODE_4175_length_696_cov_21.617391_pilon to pilon.fasta [pilon] Writing NODE_4176_length_696_cov_21.215652:1-696 changes to pilon.changes [pilon] Writing updated NODE_4176_length_696_cov_21.215652_pilon to pilon.fasta [pilon] Writing NODE_4177_length_696_cov_17.612174:1-696 changes to pilon.changes [pilon] Writing updated NODE_4177_length_696_cov_17.612174_pilon to pilon.fasta [pilon] Writing NODE_4178_length_696_cov_16.713043:1-696 changes to pilon.changes [pilon] Writing updated NODE_4178_length_696_cov_16.713043_pilon to pilon.fasta [pilon] Writing NODE_4179_length_696_cov_15.147826:1-696 changes to pilon.changes [pilon] Writing updated NODE_4179_length_696_cov_15.147826_pilon to pilon.fasta [pilon] Writing NODE_4180_length_696_cov_14.184348:1-696 changes to pilon.changes [pilon] Writing updated NODE_4180_length_696_cov_14.184348_pilon to pilon.fasta [pilon] Writing NODE_4181_length_696_cov_11.966957:1-696 changes to pilon.changes [pilon] Writing updated NODE_4181_length_696_cov_11.966957_pilon to pilon.fasta [pilon] Writing NODE_4182_length_696_cov_2.499130:1-696 changes to pilon.changes [pilon] Writing updated NODE_4182_length_696_cov_2.499130_pilon to pilon.fasta [pilon] Writing NODE_4183_length_696_cov_2.135652:1-696 changes to pilon.changes [pilon] Writing updated NODE_4183_length_696_cov_2.135652_pilon to pilon.fasta [pilon] Writing NODE_4184_length_695_cov_26.433798:1-695 changes to pilon.changes [pilon] Writing updated NODE_4184_length_695_cov_26.433798_pilon to pilon.fasta [pilon] Writing NODE_4185_length_695_cov_16.045296:1-695 changes to pilon.changes [pilon] Writing updated NODE_4185_length_695_cov_16.045296_pilon to pilon.fasta [pilon] Writing NODE_4186_length_695_cov_13.250871:1-695 changes to pilon.changes [pilon] Writing updated NODE_4186_length_695_cov_13.250871_pilon to pilon.fasta [pilon] Writing NODE_4187_length_695_cov_11.850174:1-695 changes to pilon.changes [pilon] Writing updated NODE_4187_length_695_cov_11.850174_pilon to pilon.fasta [pilon] Writing NODE_4188_length_695_cov_11.620209:1-695 changes to pilon.changes [pilon] Writing updated NODE_4188_length_695_cov_11.620209_pilon to pilon.fasta [pilon] Writing NODE_4189_length_695_cov_2.386760:1-695 changes to pilon.changes [pilon] Writing updated NODE_4189_length_695_cov_2.386760_pilon to pilon.fasta [pilon] Writing NODE_4190_length_695_cov_1.754355:1-695 changes to pilon.changes [pilon] Writing updated NODE_4190_length_695_cov_1.754355_pilon to pilon.fasta [pilon] Writing NODE_4191_length_695_cov_1.500000:1-695 changes to pilon.changes [pilon] Writing updated NODE_4191_length_695_cov_1.500000_pilon to pilon.fasta [pilon] Writing NODE_4192_length_694_cov_25.202443:1-694 changes to pilon.changes [pilon] Writing updated NODE_4192_length_694_cov_25.202443_pilon to pilon.fasta [pilon] Writing NODE_4193_length_694_cov_24.813264:1-694 changes to pilon.changes [pilon] Writing updated NODE_4193_length_694_cov_24.813264_pilon to pilon.fasta [pilon] Writing NODE_4194_length_694_cov_18.696335:1-694 changes to pilon.changes [pilon] Writing updated NODE_4194_length_694_cov_18.696335_pilon to pilon.fasta [pilon] Writing NODE_4195_length_694_cov_17.799302:1-694 changes to pilon.changes [pilon] Writing updated NODE_4195_length_694_cov_17.799302_pilon to pilon.fasta [pilon] Writing NODE_4196_length_694_cov_16.441536:1-694 changes to pilon.changes [pilon] Writing updated NODE_4196_length_694_cov_16.441536_pilon to pilon.fasta [pilon] Writing NODE_4197_length_694_cov_15.874346:1-694 changes to pilon.changes [pilon] Writing updated NODE_4197_length_694_cov_15.874346_pilon to pilon.fasta [pilon] Writing NODE_4198_length_694_cov_7.574171:1-694 changes to pilon.changes [pilon] Writing updated NODE_4198_length_694_cov_7.574171_pilon to pilon.fasta [pilon] Writing NODE_4199_length_694_cov_7.359511:1-694 changes to pilon.changes [pilon] Writing updated NODE_4199_length_694_cov_7.359511_pilon to pilon.fasta [pilon] Writing NODE_4200_length_694_cov_2.523560:1-694 changes to pilon.changes [pilon] Writing updated NODE_4200_length_694_cov_2.523560_pilon to pilon.fasta [pilon] Writing NODE_4201_length_694_cov_1.237347:1-694 changes to pilon.changes [pilon] Writing updated NODE_4201_length_694_cov_1.237347_pilon to pilon.fasta [pilon] Writing NODE_4202_length_693_cov_56.391608:1-693 changes to pilon.changes [pilon] Writing updated NODE_4202_length_693_cov_56.391608_pilon to pilon.fasta [pilon] Writing NODE_4203_length_693_cov_42.622378:1-693 changes to pilon.changes [pilon] Writing updated NODE_4203_length_693_cov_42.622378_pilon to pilon.fasta [pilon] Writing NODE_4204_length_693_cov_30.256993:1-693 changes to pilon.changes [pilon] Writing updated NODE_4204_length_693_cov_30.256993_pilon to pilon.fasta [pilon] Writing NODE_4205_length_693_cov_27.895105:1-693 changes to pilon.changes [pilon] Writing updated NODE_4205_length_693_cov_27.895105_pilon to pilon.fasta [pilon] Writing NODE_4206_length_693_cov_27.173077:1-693 changes to pilon.changes [pilon] Writing updated NODE_4206_length_693_cov_27.173077_pilon to pilon.fasta [pilon] Writing NODE_4207_length_693_cov_23.062937:1-693 changes to pilon.changes [pilon] Writing updated NODE_4207_length_693_cov_23.062937_pilon to pilon.fasta [pilon] Writing NODE_4208_length_693_cov_22.055944:1-693 changes to pilon.changes [pilon] Writing updated NODE_4208_length_693_cov_22.055944_pilon to pilon.fasta [pilon] Writing NODE_4209_length_692_cov_42.050788:1-692 changes to pilon.changes [pilon] Writing updated NODE_4209_length_692_cov_42.050788_pilon to pilon.fasta [pilon] Writing NODE_4210_length_692_cov_34.875657:1-692 changes to pilon.changes [pilon] Writing updated NODE_4210_length_692_cov_34.875657_pilon to pilon.fasta [pilon] Writing NODE_4211_length_692_cov_27.849387:1-692 changes to pilon.changes [pilon] Writing updated NODE_4211_length_692_cov_27.849387_pilon to pilon.fasta [pilon] Writing NODE_4212_length_692_cov_21.765324:1-692 changes to pilon.changes [pilon] Writing updated NODE_4212_length_692_cov_21.765324_pilon to pilon.fasta [pilon] Writing NODE_4213_length_692_cov_13.096322:1-692 changes to pilon.changes [pilon] Writing updated NODE_4213_length_692_cov_13.096322_pilon to pilon.fasta [pilon] Writing NODE_4214_length_692_cov_12.856392:1-692 changes to pilon.changes [pilon] Writing updated NODE_4214_length_692_cov_12.856392_pilon to pilon.fasta [pilon] Writing NODE_4215_length_692_cov_12.136602:1-692 changes to pilon.changes [pilon] Writing updated NODE_4215_length_692_cov_12.136602_pilon to pilon.fasta [pilon] Writing NODE_4216_length_692_cov_6.898424:1-692 changes to pilon.changes [pilon] Writing updated NODE_4216_length_692_cov_6.898424_pilon to pilon.fasta [pilon] Writing NODE_4217_length_692_cov_3.050788:1-692 changes to pilon.changes [pilon] Writing updated NODE_4217_length_692_cov_3.050788_pilon to pilon.fasta [pilon] Writing NODE_4218_length_692_cov_2.078809:1-692 changes to pilon.changes [pilon] Writing updated NODE_4218_length_692_cov_2.078809_pilon to pilon.fasta [pilon] Writing NODE_4219_length_691_cov_57.068421:1-691 changes to pilon.changes [pilon] Writing updated NODE_4219_length_691_cov_57.068421_pilon to pilon.fasta [pilon] Writing NODE_4220_length_691_cov_37.663158:1-691 changes to pilon.changes [pilon] Writing updated NODE_4220_length_691_cov_37.663158_pilon to pilon.fasta [pilon] Writing NODE_4221_length_691_cov_31.538596:1-691 changes to pilon.changes [pilon] Writing updated NODE_4221_length_691_cov_31.538596_pilon to pilon.fasta [pilon] Writing NODE_4222_length_691_cov_23.015789:1-691 changes to pilon.changes [pilon] Writing updated NODE_4222_length_691_cov_23.015789_pilon to pilon.fasta [pilon] Writing NODE_4223_length_691_cov_16.540351:1-691 changes to pilon.changes [pilon] Writing updated NODE_4223_length_691_cov_16.540351_pilon to pilon.fasta [pilon] Writing NODE_4224_length_691_cov_5.661404:1-691 changes to pilon.changes [pilon] Writing updated NODE_4224_length_691_cov_5.661404_pilon to pilon.fasta [pilon] Writing NODE_4225_length_691_cov_3.587719:1-691 changes to pilon.changes [pilon] Writing updated NODE_4225_length_691_cov_3.587719_pilon to pilon.fasta [pilon] Writing NODE_4226_length_691_cov_2.368421:1-691 changes to pilon.changes [pilon] Writing updated NODE_4226_length_691_cov_2.368421_pilon to pilon.fasta [pilon] Writing NODE_4227_length_690_cov_17.179262:1-690 changes to pilon.changes [pilon] Writing updated NODE_4227_length_690_cov_17.179262_pilon to pilon.fasta [pilon] Writing NODE_4228_length_690_cov_2.850615:1-690 changes to pilon.changes [pilon] Writing updated NODE_4228_length_690_cov_2.850615_pilon to pilon.fasta [pilon] Writing NODE_4229_length_690_cov_1.594025:1-690 changes to pilon.changes [pilon] Writing updated NODE_4229_length_690_cov_1.594025_pilon to pilon.fasta [pilon] Writing NODE_4230_length_689_cov_56.623239:1-689 changes to pilon.changes [pilon] Writing updated NODE_4230_length_689_cov_56.623239_pilon to pilon.fasta [pilon] Writing NODE_4231_length_689_cov_28.538732:1-689 changes to pilon.changes [pilon] Writing updated NODE_4231_length_689_cov_28.538732_pilon to pilon.fasta [pilon] Writing NODE_4232_length_689_cov_22.725352:1-689 changes to pilon.changes [pilon] Writing updated NODE_4232_length_689_cov_22.725352_pilon to pilon.fasta [pilon] Writing NODE_4233_length_689_cov_12.193662:1-689 changes to pilon.changes [pilon] Writing updated NODE_4233_length_689_cov_12.193662_pilon to pilon.fasta [pilon] Writing NODE_4234_length_689_cov_8.607394:1-689 changes to pilon.changes [pilon] Writing updated NODE_4234_length_689_cov_8.607394_pilon to pilon.fasta [pilon] Writing NODE_4235_length_689_cov_8.015845:1-689 changes to pilon.changes [pilon] Writing updated NODE_4235_length_689_cov_8.015845_pilon to pilon.fasta [pilon] Writing NODE_4236_length_689_cov_6.181338:1-689 changes to pilon.changes [pilon] Writing updated NODE_4236_length_689_cov_6.181338_pilon to pilon.fasta [pilon] Writing NODE_4237_length_689_cov_5.218310:1-689 changes to pilon.changes [pilon] Writing updated NODE_4237_length_689_cov_5.218310_pilon to pilon.fasta [pilon] Writing NODE_4238_length_689_cov_3.258803:1-689 changes to pilon.changes [pilon] Writing updated NODE_4238_length_689_cov_3.258803_pilon to pilon.fasta [pilon] Writing NODE_4239_length_689_cov_2.829225:1-689 changes to pilon.changes [pilon] Writing updated NODE_4239_length_689_cov_2.829225_pilon to pilon.fasta [pilon] Writing NODE_4240_length_689_cov_2.570423:1-689 changes to pilon.changes [pilon] Writing updated NODE_4240_length_689_cov_2.570423_pilon to pilon.fasta [pilon] Writing NODE_4241_length_689_cov_1.461268:1-689 changes to pilon.changes [pilon] Writing updated NODE_4241_length_689_cov_1.461268_pilon to pilon.fasta [pilon] Writing NODE_4242_length_689_cov_1.309859:1-689 changes to pilon.changes [pilon] Writing updated NODE_4242_length_689_cov_1.309859_pilon to pilon.fasta [pilon] Writing NODE_4243_length_688_cov_22.673721:1-688 changes to pilon.changes [pilon] Writing updated NODE_4243_length_688_cov_22.673721_pilon to pilon.fasta [pilon] Writing NODE_4244_length_688_cov_16.679012:1-688 changes to pilon.changes [pilon] Writing updated NODE_4244_length_688_cov_16.679012_pilon to pilon.fasta [pilon] Writing NODE_4245_length_688_cov_15.421517:1-688 changes to pilon.changes [pilon] Writing updated NODE_4245_length_688_cov_15.421517_pilon to pilon.fasta [pilon] Writing NODE_4246_length_688_cov_14.097002:1-688 changes to pilon.changes [pilon] Writing updated NODE_4246_length_688_cov_14.097002_pilon to pilon.fasta [pilon] Writing NODE_4247_length_688_cov_10.774250:1-688 changes to pilon.changes [pilon] Writing updated NODE_4247_length_688_cov_10.774250_pilon to pilon.fasta [pilon] Writing NODE_4248_length_688_cov_2.776014:1-688 changes to pilon.changes [pilon] Writing updated NODE_4248_length_688_cov_2.776014_pilon to pilon.fasta [pilon] Writing NODE_4249_length_688_cov_2.250441:1-688 changes to pilon.changes [pilon] Writing updated NODE_4249_length_688_cov_2.250441_pilon to pilon.fasta [pilon] Writing NODE_4250_length_688_cov_1.585538:1-688 changes to pilon.changes [pilon] Writing updated NODE_4250_length_688_cov_1.585538_pilon to pilon.fasta [pilon] Writing NODE_4251_length_687_cov_32.180212:1-687 changes to pilon.changes [pilon] Writing updated NODE_4251_length_687_cov_32.180212_pilon to pilon.fasta [pilon] Writing NODE_4252_length_687_cov_31.715548:1-687 changes to pilon.changes [pilon] Writing updated NODE_4252_length_687_cov_31.715548_pilon to pilon.fasta [pilon] Writing NODE_4253_length_687_cov_23.123675:1-687 changes to pilon.changes [pilon] Writing updated NODE_4253_length_687_cov_23.123675_pilon to pilon.fasta [pilon] Writing NODE_4254_length_687_cov_22.888693:1-687 changes to pilon.changes [pilon] Writing updated NODE_4254_length_687_cov_22.888693_pilon to pilon.fasta [pilon] Writing NODE_4255_length_687_cov_22.330389:1-687 changes to pilon.changes [pilon] Writing updated NODE_4255_length_687_cov_22.330389_pilon to pilon.fasta [pilon] Writing NODE_4256_length_687_cov_20.987633:1-687 changes to pilon.changes [pilon] Writing updated NODE_4256_length_687_cov_20.987633_pilon to pilon.fasta [pilon] Writing NODE_4257_length_687_cov_20.319788:1-687 changes to pilon.changes [pilon] Writing updated NODE_4257_length_687_cov_20.319788_pilon to pilon.fasta [pilon] Writing NODE_4258_length_687_cov_14.118375:1-687 changes to pilon.changes [pilon] Writing updated NODE_4258_length_687_cov_14.118375_pilon to pilon.fasta [pilon] Writing NODE_4259_length_687_cov_9.879859:1-687 changes to pilon.changes [pilon] Writing updated NODE_4259_length_687_cov_9.879859_pilon to pilon.fasta [pilon] Writing NODE_4260_length_687_cov_6.309187:1-687 changes to pilon.changes [pilon] Writing updated NODE_4260_length_687_cov_6.309187_pilon to pilon.fasta [pilon] Writing NODE_4261_length_687_cov_2.420495:1-687 changes to pilon.changes [pilon] Writing updated NODE_4261_length_687_cov_2.420495_pilon to pilon.fasta [pilon] Writing NODE_4262_length_686_cov_40.927434:1-686 changes to pilon.changes [pilon] Writing updated NODE_4262_length_686_cov_40.927434_pilon to pilon.fasta [pilon] Writing NODE_4263_length_686_cov_15.513274:1-686 changes to pilon.changes [pilon] Writing updated NODE_4263_length_686_cov_15.513274_pilon to pilon.fasta [pilon] Writing NODE_4264_length_686_cov_5.097345:1-686 changes to pilon.changes [pilon] Writing updated NODE_4264_length_686_cov_5.097345_pilon to pilon.fasta [pilon] Writing NODE_4265_length_685_cov_29.042553:1-685 changes to pilon.changes [pilon] Writing updated NODE_4265_length_685_cov_29.042553_pilon to pilon.fasta [pilon] Writing NODE_4266_length_685_cov_5.998227:1-685 changes to pilon.changes [pilon] Writing updated NODE_4266_length_685_cov_5.998227_pilon to pilon.fasta [pilon] Writing NODE_4267_length_685_cov_2.955674:1-685 changes to pilon.changes [pilon] Writing updated NODE_4267_length_685_cov_2.955674_pilon to pilon.fasta [pilon] Writing NODE_4268_length_685_cov_2.193262:1-685 changes to pilon.changes [pilon] Writing updated NODE_4268_length_685_cov_2.193262_pilon to pilon.fasta [pilon] Writing NODE_4269_length_685_cov_1.865248:1-685 changes to pilon.changes [pilon] Writing updated NODE_4269_length_685_cov_1.865248_pilon to pilon.fasta [pilon] Writing NODE_4270_length_685_cov_1.599291:1-685 changes to pilon.changes [pilon] Writing updated NODE_4270_length_685_cov_1.599291_pilon to pilon.fasta [pilon] Writing NODE_4271_length_684_cov_21.055062:1-684 changes to pilon.changes [pilon] Writing updated NODE_4271_length_684_cov_21.055062_pilon to pilon.fasta [pilon] Writing NODE_4272_length_684_cov_19.808171:1-684 changes to pilon.changes [pilon] Writing updated NODE_4272_length_684_cov_19.808171_pilon to pilon.fasta [pilon] Writing NODE_4273_length_684_cov_19.722913:1-684 changes to pilon.changes [pilon] Writing updated NODE_4273_length_684_cov_19.722913_pilon to pilon.fasta [pilon] Writing NODE_4274_length_684_cov_15.699822:1-684 changes to pilon.changes [pilon] Writing updated NODE_4274_length_684_cov_15.699822_pilon to pilon.fasta [pilon] Writing NODE_4275_length_684_cov_14.513321:1-684 changes to pilon.changes [pilon] Writing updated NODE_4275_length_684_cov_14.513321_pilon to pilon.fasta [pilon] Writing NODE_4276_length_684_cov_8.609236:1-684 changes to pilon.changes [pilon] Writing updated NODE_4276_length_684_cov_8.609236_pilon to pilon.fasta [pilon] Writing NODE_4277_length_684_cov_5.182948:1-684 changes to pilon.changes [pilon] Writing updated NODE_4277_length_684_cov_5.182948_pilon to pilon.fasta [pilon] Writing NODE_4278_length_684_cov_2.113677:1-684 changes to pilon.changes [pilon] Writing updated NODE_4278_length_684_cov_2.113677_pilon to pilon.fasta [pilon] Writing NODE_4279_length_684_cov_0.621670:1-684 changes to pilon.changes [pilon] Writing updated NODE_4279_length_684_cov_0.621670_pilon to pilon.fasta [pilon] Writing NODE_4280_length_683_cov_56.387900:1-683 changes to pilon.changes [pilon] Writing updated NODE_4280_length_683_cov_56.387900_pilon to pilon.fasta [pilon] Writing NODE_4281_length_683_cov_22.804270:1-683 changes to pilon.changes [pilon] Writing updated NODE_4281_length_683_cov_22.804270_pilon to pilon.fasta [pilon] Writing NODE_4282_length_683_cov_20.290036:1-683 changes to pilon.changes [pilon] Writing updated NODE_4282_length_683_cov_20.290036_pilon to pilon.fasta [pilon] Writing NODE_4283_length_683_cov_19.928826:1-683 changes to pilon.changes [pilon] Writing updated NODE_4283_length_683_cov_19.928826_pilon to pilon.fasta [pilon] Writing NODE_4284_length_683_cov_11.715302:1-683 changes to pilon.changes [pilon] Writing updated NODE_4284_length_683_cov_11.715302_pilon to pilon.fasta [pilon] Writing NODE_4285_length_683_cov_11.097865:1-683 changes to pilon.changes [pilon] Writing updated NODE_4285_length_683_cov_11.097865_pilon to pilon.fasta [pilon] Writing NODE_4286_length_683_cov_3.281139:1-683 changes to pilon.changes [pilon] Writing updated NODE_4286_length_683_cov_3.281139_pilon to pilon.fasta [pilon] Writing NODE_4287_length_683_cov_2.852313:1-683 changes to pilon.changes [pilon] Writing updated NODE_4287_length_683_cov_2.852313_pilon to pilon.fasta [pilon] Writing NODE_4288_length_683_cov_1.419929:1-683 changes to pilon.changes [pilon] Writing updated NODE_4288_length_683_cov_1.419929_pilon to pilon.fasta [pilon] Writing NODE_4289_length_683_cov_1.379004:1-683 changes to pilon.changes [pilon] Writing updated NODE_4289_length_683_cov_1.379004_pilon to pilon.fasta [pilon] Writing NODE_4290_length_682_cov_31.966132:1-682 changes to pilon.changes [pilon] Writing updated NODE_4290_length_682_cov_31.966132_pilon to pilon.fasta [pilon] Writing NODE_4291_length_682_cov_5.597148:1-682 changes to pilon.changes [pilon] Writing updated NODE_4291_length_682_cov_5.597148_pilon to pilon.fasta [pilon] Writing NODE_4292_length_682_cov_4.265597:1-682 changes to pilon.changes [pilon] Writing updated NODE_4292_length_682_cov_4.265597_pilon to pilon.fasta [pilon] Writing NODE_4293_length_682_cov_3.238859:1-682 changes to pilon.changes [pilon] Writing updated NODE_4293_length_682_cov_3.238859_pilon to pilon.fasta [pilon] Writing NODE_4294_length_682_cov_2.748663:1-682 changes to pilon.changes [pilon] Writing updated NODE_4294_length_682_cov_2.748663_pilon to pilon.fasta [pilon] Writing NODE_4295_length_682_cov_2.146168:1-682 changes to pilon.changes [pilon] Writing updated NODE_4295_length_682_cov_2.146168_pilon to pilon.fasta [pilon] Writing NODE_4296_length_681_cov_48.375000:1-681 changes to pilon.changes [pilon] Writing updated NODE_4296_length_681_cov_48.375000_pilon to pilon.fasta [pilon] Writing NODE_4297_length_681_cov_43.503571:1-681 changes to pilon.changes [pilon] Writing updated NODE_4297_length_681_cov_43.503571_pilon to pilon.fasta [pilon] Writing NODE_4298_length_681_cov_30.448214:1-681 changes to pilon.changes [pilon] Writing updated NODE_4298_length_681_cov_30.448214_pilon to pilon.fasta [pilon] Writing NODE_4299_length_681_cov_21.223214:1-681 changes to pilon.changes [pilon] Writing updated NODE_4299_length_681_cov_21.223214_pilon to pilon.fasta [pilon] Writing NODE_4300_length_681_cov_16.875000:1-681 changes to pilon.changes [pilon] Writing updated NODE_4300_length_681_cov_16.875000_pilon to pilon.fasta [pilon] Writing NODE_4301_length_681_cov_10.628571:1-681 changes to pilon.changes [pilon] Writing updated NODE_4301_length_681_cov_10.628571_pilon to pilon.fasta [pilon] Writing NODE_4302_length_681_cov_2.985714:1-681 changes to pilon.changes [pilon] Writing updated NODE_4302_length_681_cov_2.985714_pilon to pilon.fasta [pilon] Writing NODE_4303_length_681_cov_2.835714:1-681 changes to pilon.changes [pilon] Writing updated NODE_4303_length_681_cov_2.835714_pilon to pilon.fasta [pilon] Writing NODE_4304_length_681_cov_2.792857:1-681 changes to pilon.changes [pilon] Writing updated NODE_4304_length_681_cov_2.792857_pilon to pilon.fasta [pilon] Writing NODE_4305_length_681_cov_1.357143:1-681 changes to pilon.changes [pilon] Writing updated NODE_4305_length_681_cov_1.357143_pilon to pilon.fasta [pilon] Writing NODE_4306_length_681_cov_0.796429:1-681 changes to pilon.changes [pilon] Writing updated NODE_4306_length_681_cov_0.796429_pilon to pilon.fasta [pilon] Writing NODE_4307_length_680_cov_33.030411:1-680 changes to pilon.changes [pilon] Writing updated NODE_4307_length_680_cov_33.030411_pilon to pilon.fasta [pilon] Writing NODE_4308_length_680_cov_14.091234:1-680 changes to pilon.changes [pilon] Writing updated NODE_4308_length_680_cov_14.091234_pilon to pilon.fasta [pilon] Writing NODE_4309_length_680_cov_11.833631:1-680 changes to pilon.changes [pilon] Writing updated NODE_4309_length_680_cov_11.833631_pilon to pilon.fasta [pilon] Writing NODE_4310_length_679_cov_74.756272:1-679 changes to pilon.changes [pilon] Writing updated NODE_4310_length_679_cov_74.756272_pilon to pilon.fasta [pilon] Writing NODE_4311_length_679_cov_38.039427:1-679 changes to pilon.changes [pilon] Writing updated NODE_4311_length_679_cov_38.039427_pilon to pilon.fasta [pilon] Writing NODE_4312_length_679_cov_36.541219:1-679 changes to pilon.changes [pilon] Writing updated NODE_4312_length_679_cov_36.541219_pilon to pilon.fasta [pilon] Writing NODE_4313_length_679_cov_25.804659:1-679 changes to pilon.changes [pilon] Writing updated NODE_4313_length_679_cov_25.804659_pilon to pilon.fasta [pilon] Writing NODE_4314_length_679_cov_11.055556:1-679 changes to pilon.changes [pilon] Writing updated NODE_4314_length_679_cov_11.055556_pilon to pilon.fasta [pilon] Writing NODE_4315_length_679_cov_3.960573:1-679 changes to pilon.changes [pilon] Writing updated NODE_4315_length_679_cov_3.960573_pilon to pilon.fasta [pilon] Writing NODE_4316_length_679_cov_2.123656:1-679 changes to pilon.changes [pilon] Writing updated NODE_4316_length_679_cov_2.123656_pilon to pilon.fasta [pilon] Writing NODE_4317_length_679_cov_1.250896:1-679 changes to pilon.changes [pilon] Writing updated NODE_4317_length_679_cov_1.250896_pilon to pilon.fasta [pilon] Writing NODE_4318_length_679_cov_1.053763:1-679 changes to pilon.changes [pilon] Writing updated NODE_4318_length_679_cov_1.053763_pilon to pilon.fasta [pilon] Writing NODE_4319_length_678_cov_34.244165:1-678 changes to pilon.changes [pilon] Writing updated NODE_4319_length_678_cov_34.244165_pilon to pilon.fasta [pilon] Writing NODE_4320_length_678_cov_23.714542:1-678 changes to pilon.changes [pilon] Writing updated NODE_4320_length_678_cov_23.714542_pilon to pilon.fasta [pilon] Writing NODE_4321_length_678_cov_22.163375:1-678 changes to pilon.changes [pilon] Writing updated NODE_4321_length_678_cov_22.163375_pilon to pilon.fasta [pilon] Writing NODE_4322_length_678_cov_20.836625:1-678 changes to pilon.changes [pilon] Writing updated NODE_4322_length_678_cov_20.836625_pilon to pilon.fasta [pilon] Writing NODE_4323_length_678_cov_11.080790:1-678 changes to pilon.changes [pilon] Writing updated NODE_4323_length_678_cov_11.080790_pilon to pilon.fasta [pilon] Writing NODE_4324_length_678_cov_4.314183:1-678 changes to pilon.changes [pilon] Writing updated NODE_4324_length_678_cov_4.314183_pilon to pilon.fasta [pilon] Writing NODE_4325_length_678_cov_3.971275:1-678 changes to pilon.changes [pilon] Writing updated NODE_4325_length_678_cov_3.971275_pilon to pilon.fasta [pilon] Writing NODE_4326_length_678_cov_3.827648:1-678 changes to pilon.changes [pilon] Writing updated NODE_4326_length_678_cov_3.827648_pilon to pilon.fasta [pilon] Writing NODE_4327_length_678_cov_2.818671:1-678 changes to pilon.changes [pilon] Writing updated NODE_4327_length_678_cov_2.818671_pilon to pilon.fasta [pilon] Writing NODE_4328_length_678_cov_2.165171:1-678 changes to pilon.changes [pilon] Writing updated NODE_4328_length_678_cov_2.165171_pilon to pilon.fasta [pilon] Writing NODE_4329_length_678_cov_2.095153:1-678 changes to pilon.changes [pilon] Writing updated NODE_4329_length_678_cov_2.095153_pilon to pilon.fasta [pilon] Writing NODE_4330_length_678_cov_1.342908:1-678 changes to pilon.changes [pilon] Writing updated NODE_4330_length_678_cov_1.342908_pilon to pilon.fasta [pilon] Writing NODE_4331_length_678_cov_1.337522:1-678 changes to pilon.changes [pilon] Writing updated NODE_4331_length_678_cov_1.337522_pilon to pilon.fasta [pilon] Writing NODE_4332_length_678_cov_1.271095:1-678 changes to pilon.changes [pilon] Writing updated NODE_4332_length_678_cov_1.271095_pilon to pilon.fasta [pilon] Writing NODE_4333_length_677_cov_39.097122:1-677 changes to pilon.changes [pilon] Writing updated NODE_4333_length_677_cov_39.097122_pilon to pilon.fasta [pilon] Writing NODE_4334_length_677_cov_33.325540:1-677 changes to pilon.changes [pilon] Writing updated NODE_4334_length_677_cov_33.325540_pilon to pilon.fasta [pilon] Writing NODE_4335_length_677_cov_25.388489:1-677 changes to pilon.changes [pilon] Writing updated NODE_4335_length_677_cov_25.388489_pilon to pilon.fasta [pilon] Writing NODE_4336_length_677_cov_10.832734:1-677 changes to pilon.changes [pilon] Writing updated NODE_4336_length_677_cov_10.832734_pilon to pilon.fasta [pilon] Writing NODE_4337_length_677_cov_4.158273:1-677 changes to pilon.changes [pilon] Writing updated NODE_4337_length_677_cov_4.158273_pilon to pilon.fasta [pilon] Writing NODE_4338_length_677_cov_3.762590:1-677 changes to pilon.changes [pilon] Writing updated NODE_4338_length_677_cov_3.762590_pilon to pilon.fasta [pilon] Writing NODE_4339_length_677_cov_3.226619:1-677 changes to pilon.changes [pilon] Writing updated NODE_4339_length_677_cov_3.226619_pilon to pilon.fasta [pilon] Writing NODE_4340_length_677_cov_3.014388:1-677 changes to pilon.changes [pilon] Writing updated NODE_4340_length_677_cov_3.014388_pilon to pilon.fasta [pilon] Writing NODE_4341_length_677_cov_1.323741:1-677 changes to pilon.changes [pilon] Writing updated NODE_4341_length_677_cov_1.323741_pilon to pilon.fasta [pilon] Writing NODE_4342_length_676_cov_37.940541:1-676 changes to pilon.changes [pilon] Writing updated NODE_4342_length_676_cov_37.940541_pilon to pilon.fasta [pilon] Writing NODE_4343_length_676_cov_30.282883:1-676 changes to pilon.changes [pilon] Writing updated NODE_4343_length_676_cov_30.282883_pilon to pilon.fasta [pilon] Writing NODE_4344_length_676_cov_26.410811:1-676 changes to pilon.changes [pilon] Writing updated NODE_4344_length_676_cov_26.410811_pilon to pilon.fasta [pilon] Writing NODE_4345_length_676_cov_23.524324:1-676 changes to pilon.changes [pilon] Writing updated NODE_4345_length_676_cov_23.524324_pilon to pilon.fasta [pilon] Writing NODE_4346_length_676_cov_20.850450:1-676 changes to pilon.changes [pilon] Writing updated NODE_4346_length_676_cov_20.850450_pilon to pilon.fasta [pilon] Writing NODE_4347_length_676_cov_17.198198:1-676 changes to pilon.changes [pilon] Writing updated NODE_4347_length_676_cov_17.198198_pilon to pilon.fasta [pilon] Writing NODE_4348_length_676_cov_14.805405:1-676 changes to pilon.changes [pilon] Writing updated NODE_4348_length_676_cov_14.805405_pilon to pilon.fasta [pilon] Writing NODE_4349_length_676_cov_4.518919:1-676 changes to pilon.changes [pilon] Writing updated NODE_4349_length_676_cov_4.518919_pilon to pilon.fasta [pilon] Writing NODE_4350_length_676_cov_2.758559:1-676 changes to pilon.changes [pilon] Writing updated NODE_4350_length_676_cov_2.758559_pilon to pilon.fasta [pilon] Writing NODE_4351_length_676_cov_2.562162:1-676 changes to pilon.changes [pilon] Writing updated NODE_4351_length_676_cov_2.562162_pilon to pilon.fasta [pilon] Writing NODE_4352_length_676_cov_2.369369:1-676 changes to pilon.changes [pilon] Writing updated NODE_4352_length_676_cov_2.369369_pilon to pilon.fasta [pilon] Writing NODE_4353_length_675_cov_31.788809:1-675 changes to pilon.changes [pilon] Writing updated NODE_4353_length_675_cov_31.788809_pilon to pilon.fasta [pilon] Writing NODE_4354_length_675_cov_18.658845:1-675 changes to pilon.changes [pilon] Writing updated NODE_4354_length_675_cov_18.658845_pilon to pilon.fasta [pilon] Writing NODE_4355_length_675_cov_13.389892:1-675 changes to pilon.changes [pilon] Writing updated NODE_4355_length_675_cov_13.389892_pilon to pilon.fasta [pilon] Writing NODE_4356_length_675_cov_12.667870:1-675 changes to pilon.changes [pilon] Writing updated NODE_4356_length_675_cov_12.667870_pilon to pilon.fasta [pilon] Writing NODE_4357_length_675_cov_7.996390:1-675 changes to pilon.changes [pilon] Writing updated NODE_4357_length_675_cov_7.996390_pilon to pilon.fasta [pilon] Writing NODE_4358_length_675_cov_6.218412:1-675 changes to pilon.changes [pilon] Writing updated NODE_4358_length_675_cov_6.218412_pilon to pilon.fasta [pilon] Writing NODE_4359_length_675_cov_4.074007:1-675 changes to pilon.changes [pilon] Writing updated NODE_4359_length_675_cov_4.074007_pilon to pilon.fasta [pilon] Writing NODE_4360_length_675_cov_1.891697:1-675 changes to pilon.changes [pilon] Writing updated NODE_4360_length_675_cov_1.891697_pilon to pilon.fasta [pilon] Writing NODE_4361_length_675_cov_1.851986:1-675 changes to pilon.changes [pilon] Writing updated NODE_4361_length_675_cov_1.851986_pilon to pilon.fasta [pilon] Writing NODE_4362_length_675_cov_1.137184:1-675 changes to pilon.changes [pilon] Writing updated NODE_4362_length_675_cov_1.137184_pilon to pilon.fasta [pilon] Writing NODE_4363_length_675_cov_1.099278:1-675 changes to pilon.changes [pilon] Writing updated NODE_4363_length_675_cov_1.099278_pilon to pilon.fasta [pilon] Writing NODE_4364_length_674_cov_28.198915:1-674 changes to pilon.changes [pilon] Writing updated NODE_4364_length_674_cov_28.198915_pilon to pilon.fasta [pilon] Writing NODE_4365_length_674_cov_25.801085:1-674 changes to pilon.changes [pilon] Writing updated NODE_4365_length_674_cov_25.801085_pilon to pilon.fasta [pilon] Writing NODE_4366_length_674_cov_21.106691:1-674 changes to pilon.changes [pilon] Writing updated NODE_4366_length_674_cov_21.106691_pilon to pilon.fasta [pilon] Writing NODE_4367_length_674_cov_15.566004:1-674 changes to pilon.changes [pilon] Writing updated NODE_4367_length_674_cov_15.566004_pilon to pilon.fasta [pilon] Writing NODE_4368_length_674_cov_13.631103:1-674 changes to pilon.changes [pilon] Writing updated NODE_4368_length_674_cov_13.631103_pilon to pilon.fasta [pilon] Writing NODE_4369_length_674_cov_12.197107:1-674 changes to pilon.changes [pilon] Writing updated NODE_4369_length_674_cov_12.197107_pilon to pilon.fasta [pilon] Writing NODE_4370_length_674_cov_10.325497:1-674 changes to pilon.changes [pilon] Writing updated NODE_4370_length_674_cov_10.325497_pilon to pilon.fasta [pilon] Writing NODE_4371_length_674_cov_3.978300:1-674 changes to pilon.changes [pilon] Writing updated NODE_4371_length_674_cov_3.978300_pilon to pilon.fasta [pilon] Writing NODE_4372_length_674_cov_1.356239:1-674 changes to pilon.changes [pilon] Writing updated NODE_4372_length_674_cov_1.356239_pilon to pilon.fasta [pilon] Writing NODE_4373_length_673_cov_51.079710:1-673 changes to pilon.changes [pilon] Writing updated NODE_4373_length_673_cov_51.079710_pilon to pilon.fasta [pilon] Writing NODE_4374_length_673_cov_31.003623:1-673 changes to pilon.changes [pilon] Writing updated NODE_4374_length_673_cov_31.003623_pilon to pilon.fasta [pilon] Writing NODE_4375_length_673_cov_27.735507:1-673 changes to pilon.changes [pilon] Writing updated NODE_4375_length_673_cov_27.735507_pilon to pilon.fasta [pilon] Writing NODE_4376_length_673_cov_25.347826:1-673 changes to pilon.changes [pilon] Writing updated NODE_4376_length_673_cov_25.347826_pilon to pilon.fasta [pilon] Writing NODE_4377_length_673_cov_19.885870:1-673 changes to pilon.changes [pilon] Writing updated NODE_4377_length_673_cov_19.885870_pilon to pilon.fasta [pilon] Writing NODE_4378_length_673_cov_19.394928:1-673 changes to pilon.changes [pilon] Writing updated NODE_4378_length_673_cov_19.394928_pilon to pilon.fasta [pilon] Writing NODE_4379_length_673_cov_16.353261:1-673 changes to pilon.changes [pilon] Writing updated NODE_4379_length_673_cov_16.353261_pilon to pilon.fasta [pilon] Writing NODE_4380_length_673_cov_13.077899:1-673 changes to pilon.changes [pilon] Writing updated NODE_4380_length_673_cov_13.077899_pilon to pilon.fasta [pilon] Writing NODE_4381_length_673_cov_2.742754:1-673 changes to pilon.changes [pilon] Writing updated NODE_4381_length_673_cov_2.742754_pilon to pilon.fasta [pilon] Writing NODE_4382_length_673_cov_2.123188:1-673 changes to pilon.changes [pilon] Writing updated NODE_4382_length_673_cov_2.123188_pilon to pilon.fasta [pilon] Writing NODE_4383_length_673_cov_2.001812:1-673 changes to pilon.changes [pilon] Writing updated NODE_4383_length_673_cov_2.001812_pilon to pilon.fasta [pilon] Writing NODE_4384_length_673_cov_1.599638:1-673 changes to pilon.changes [pilon] Writing updated NODE_4384_length_673_cov_1.599638_pilon to pilon.fasta [pilon] Writing NODE_4385_length_673_cov_1.442029:1-673 changes to pilon.changes [pilon] Writing updated NODE_4385_length_673_cov_1.442029_pilon to pilon.fasta [pilon] Writing NODE_4386_length_673_cov_1.041667:1-673 changes to pilon.changes [pilon] Writing updated NODE_4386_length_673_cov_1.041667_pilon to pilon.fasta [pilon] Writing NODE_4387_length_672_cov_29.764065:1-672 changes to pilon.changes [pilon] Writing updated NODE_4387_length_672_cov_29.764065_pilon to pilon.fasta [pilon] Writing NODE_4388_length_672_cov_23.460980:1-672 changes to pilon.changes [pilon] Writing updated NODE_4388_length_672_cov_23.460980_pilon to pilon.fasta [pilon] Writing NODE_4389_length_672_cov_21.705989:1-672 changes to pilon.changes [pilon] Writing updated NODE_4389_length_672_cov_21.705989_pilon to pilon.fasta [pilon] Writing NODE_4390_length_672_cov_20.063521:1-672 changes to pilon.changes [pilon] Writing updated NODE_4390_length_672_cov_20.063521_pilon to pilon.fasta [pilon] Writing NODE_4391_length_672_cov_17.112523:1-672 changes to pilon.changes [pilon] Writing updated NODE_4391_length_672_cov_17.112523_pilon to pilon.fasta [pilon] Writing NODE_4392_length_672_cov_11.622505:1-672 changes to pilon.changes [pilon] Writing updated NODE_4392_length_672_cov_11.622505_pilon to pilon.fasta [pilon] Writing NODE_4393_length_672_cov_8.061706:1-672 changes to pilon.changes [pilon] Writing updated NODE_4393_length_672_cov_8.061706_pilon to pilon.fasta [pilon] Writing NODE_4394_length_672_cov_2.439201:1-672 changes to pilon.changes [pilon] Writing updated NODE_4394_length_672_cov_2.439201_pilon to pilon.fasta [pilon] Writing NODE_4395_length_671_cov_51.956364:1-671 changes to pilon.changes [pilon] Writing updated NODE_4395_length_671_cov_51.956364_pilon to pilon.fasta [pilon] Writing NODE_4396_length_671_cov_24.400000:1-671 changes to pilon.changes [pilon] Writing updated NODE_4396_length_671_cov_24.400000_pilon to pilon.fasta [pilon] Writing NODE_4397_length_671_cov_23.798182:1-671 changes to pilon.changes [pilon] Writing updated NODE_4397_length_671_cov_23.798182_pilon to pilon.fasta [pilon] Writing NODE_4398_length_671_cov_22.356364:1-671 changes to pilon.changes [pilon] Writing updated NODE_4398_length_671_cov_22.356364_pilon to pilon.fasta [pilon] Writing NODE_4399_length_671_cov_20.532727:1-671 changes to pilon.changes [pilon] Writing updated NODE_4399_length_671_cov_20.532727_pilon to pilon.fasta [pilon] Writing NODE_4400_length_671_cov_18.505455:1-671 changes to pilon.changes [pilon] Writing updated NODE_4400_length_671_cov_18.505455_pilon to pilon.fasta [pilon] Writing NODE_4401_length_671_cov_17.463636:1-671 changes to pilon.changes [pilon] Writing updated NODE_4401_length_671_cov_17.463636_pilon to pilon.fasta [pilon] Writing NODE_4402_length_671_cov_12.329091:1-671 changes to pilon.changes [pilon] Writing updated NODE_4402_length_671_cov_12.329091_pilon to pilon.fasta [pilon] Writing NODE_4403_length_671_cov_11.727273:1-671 changes to pilon.changes [pilon] Writing updated NODE_4403_length_671_cov_11.727273_pilon to pilon.fasta [pilon] Writing NODE_4404_length_671_cov_9.400000:1-671 changes to pilon.changes [pilon] Writing updated NODE_4404_length_671_cov_9.400000_pilon to pilon.fasta [pilon] Writing NODE_4405_length_671_cov_3.790909:1-671 changes to pilon.changes [pilon] Writing updated NODE_4405_length_671_cov_3.790909_pilon to pilon.fasta [pilon] Writing NODE_4406_length_671_cov_2.669091:1-671 changes to pilon.changes [pilon] Writing updated NODE_4406_length_671_cov_2.669091_pilon to pilon.fasta [pilon] Writing NODE_4407_length_671_cov_1.123636:1-671 changes to pilon.changes [pilon] Writing updated NODE_4407_length_671_cov_1.123636_pilon to pilon.fasta [pilon] Writing NODE_4408_length_671_cov_0.800000:1-671 changes to pilon.changes [pilon] Writing updated NODE_4408_length_671_cov_0.800000_pilon to pilon.fasta [pilon] Writing NODE_4409_length_670_cov_64.930783:1-670 changes to pilon.changes [pilon] Writing updated NODE_4409_length_670_cov_64.930783_pilon to pilon.fasta [pilon] Writing NODE_4410_length_670_cov_38.983607:1-670 changes to pilon.changes [pilon] Writing updated NODE_4410_length_670_cov_38.983607_pilon to pilon.fasta [pilon] Writing NODE_4411_length_670_cov_27.459016:1-670 changes to pilon.changes [pilon] Writing updated NODE_4411_length_670_cov_27.459016_pilon to pilon.fasta [pilon] Writing NODE_4412_length_670_cov_20.344262:1-670 changes to pilon.changes [pilon] Writing updated NODE_4412_length_670_cov_20.344262_pilon to pilon.fasta [pilon] Writing NODE_4413_length_670_cov_19.699454:1-670 changes to pilon.changes [pilon] Writing updated NODE_4413_length_670_cov_19.699454_pilon to pilon.fasta [pilon] Writing NODE_4414_length_670_cov_4.990893:1-670 changes to pilon.changes [pilon] Writing updated NODE_4414_length_670_cov_4.990893_pilon to pilon.fasta [pilon] Writing NODE_4415_length_670_cov_3.914390:1-670 changes to pilon.changes [pilon] Writing updated NODE_4415_length_670_cov_3.914390_pilon to pilon.fasta [pilon] Writing NODE_4416_length_670_cov_2.540984:1-670 changes to pilon.changes [pilon] Writing updated NODE_4416_length_670_cov_2.540984_pilon to pilon.fasta [pilon] Writing NODE_4417_length_670_cov_1.045537:1-670 changes to pilon.changes [pilon] Writing updated NODE_4417_length_670_cov_1.045537_pilon to pilon.fasta [pilon] Writing NODE_4418_length_670_cov_0.936248:1-670 changes to pilon.changes [pilon] Writing updated NODE_4418_length_670_cov_0.936248_pilon to pilon.fasta [pilon] Writing NODE_4419_length_670_cov_0.825137:1-670 changes to pilon.changes [pilon] Writing updated NODE_4419_length_670_cov_0.825137_pilon to pilon.fasta [pilon] Writing NODE_4420_length_669_cov_15.145985:1-669 changes to pilon.changes [pilon] Writing updated NODE_4420_length_669_cov_15.145985_pilon to pilon.fasta [pilon] Writing NODE_4421_length_669_cov_11.888686:1-669 changes to pilon.changes [pilon] Writing updated NODE_4421_length_669_cov_11.888686_pilon to pilon.fasta [pilon] Writing NODE_4422_length_669_cov_5.239051:1-669 changes to pilon.changes [pilon] Writing updated NODE_4422_length_669_cov_5.239051_pilon to pilon.fasta [pilon] Writing NODE_4423_length_669_cov_1.764599:1-669 changes to pilon.changes [pilon] Writing updated NODE_4423_length_669_cov_1.764599_pilon to pilon.fasta [pilon] Writing NODE_4424_length_669_cov_1.437956:1-669 changes to pilon.changes [pilon] Writing updated NODE_4424_length_669_cov_1.437956_pilon to pilon.fasta [pilon] Writing NODE_4425_length_669_cov_1.343066:1-669 changes to pilon.changes [pilon] Writing updated NODE_4425_length_669_cov_1.343066_pilon to pilon.fasta [pilon] Writing NODE_4426_length_669_cov_0.739051:1-669 changes to pilon.changes [pilon] Writing updated NODE_4426_length_669_cov_0.739051_pilon to pilon.fasta [pilon] Writing NODE_4427_length_668_cov_41.740402:1-668 changes to pilon.changes [pilon] Writing updated NODE_4427_length_668_cov_41.740402_pilon to pilon.fasta [pilon] Writing NODE_4428_length_668_cov_24.552102:1-668 changes to pilon.changes [pilon] Writing updated NODE_4428_length_668_cov_24.552102_pilon to pilon.fasta [pilon] Writing NODE_4429_length_668_cov_20.197441:1-668 changes to pilon.changes [pilon] Writing updated NODE_4429_length_668_cov_20.197441_pilon to pilon.fasta [pilon] Writing NODE_4430_length_668_cov_19.100548:1-668 changes to pilon.changes [pilon] Writing updated NODE_4430_length_668_cov_19.100548_pilon to pilon.fasta [pilon] Writing NODE_4431_length_668_cov_11.996344:1-668 changes to pilon.changes [pilon] Writing updated NODE_4431_length_668_cov_11.996344_pilon to pilon.fasta [pilon] Writing NODE_4432_length_668_cov_2.466179:1-668 changes to pilon.changes [pilon] Writing updated NODE_4432_length_668_cov_2.466179_pilon to pilon.fasta [pilon] Writing NODE_4433_length_668_cov_1.043876:1-668 changes to pilon.changes [pilon] Writing updated NODE_4433_length_668_cov_1.043876_pilon to pilon.fasta [pilon] Writing NODE_4434_length_667_cov_46.734432:1-667 changes to pilon.changes [pilon] Writing updated NODE_4434_length_667_cov_46.734432_pilon to pilon.fasta [pilon] Writing NODE_4435_length_667_cov_26.153846:1-667 changes to pilon.changes [pilon] Writing updated NODE_4435_length_667_cov_26.153846_pilon to pilon.fasta [pilon] Writing NODE_4436_length_667_cov_22.589744:1-667 changes to pilon.changes [pilon] Writing updated NODE_4436_length_667_cov_22.589744_pilon to pilon.fasta [pilon] Writing NODE_4437_length_667_cov_20.236264:1-667 changes to pilon.changes [pilon] Writing updated NODE_4437_length_667_cov_20.236264_pilon to pilon.fasta [pilon] Writing NODE_4438_length_667_cov_10.708791:1-667 changes to pilon.changes [pilon] Writing updated NODE_4438_length_667_cov_10.708791_pilon to pilon.fasta [pilon] Writing NODE_4439_length_667_cov_3.851648:1-667 changes to pilon.changes [pilon] Writing updated NODE_4439_length_667_cov_3.851648_pilon to pilon.fasta [pilon] Writing NODE_4440_length_667_cov_2.492674:1-667 changes to pilon.changes [pilon] Writing updated NODE_4440_length_667_cov_2.492674_pilon to pilon.fasta [pilon] Writing NODE_4441_length_667_cov_2.293040:1-667 changes to pilon.changes [pilon] Writing updated NODE_4441_length_667_cov_2.293040_pilon to pilon.fasta [pilon] Writing NODE_4442_length_667_cov_2.146520:1-667 changes to pilon.changes [pilon] Writing updated NODE_4442_length_667_cov_2.146520_pilon to pilon.fasta [pilon] Writing NODE_4443_length_667_cov_2.003663:1-667 changes to pilon.changes [pilon] Writing updated NODE_4443_length_667_cov_2.003663_pilon to pilon.fasta [pilon] Writing NODE_4444_length_667_cov_1.379121:1-667 changes to pilon.changes [pilon] Writing updated NODE_4444_length_667_cov_1.379121_pilon to pilon.fasta [pilon] Writing NODE_4445_length_666_cov_21.368807:1-666 changes to pilon.changes [pilon] Writing updated NODE_4445_length_666_cov_21.368807_pilon to pilon.fasta [pilon] Writing NODE_4446_length_666_cov_17.060550:1-666 changes to pilon.changes [pilon] Writing updated NODE_4446_length_666_cov_17.060550_pilon to pilon.fasta [pilon] Writing NODE_4447_length_666_cov_16.045872:1-666 changes to pilon.changes [pilon] Writing updated NODE_4447_length_666_cov_16.045872_pilon to pilon.fasta [pilon] Writing NODE_4448_length_666_cov_14.563303:1-666 changes to pilon.changes [pilon] Writing updated NODE_4448_length_666_cov_14.563303_pilon to pilon.fasta [pilon] Writing NODE_4449_length_666_cov_12.231193:1-666 changes to pilon.changes [pilon] Writing updated NODE_4449_length_666_cov_12.231193_pilon to pilon.fasta [pilon] Writing NODE_4450_length_666_cov_8.220183:1-666 changes to pilon.changes [pilon] Writing updated NODE_4450_length_666_cov_8.220183_pilon to pilon.fasta [pilon] Writing NODE_4451_length_666_cov_6.851376:1-666 changes to pilon.changes [pilon] Writing updated NODE_4451_length_666_cov_6.851376_pilon to pilon.fasta [pilon] Writing NODE_4452_length_666_cov_6.291743:1-666 changes to pilon.changes [pilon] Writing updated NODE_4452_length_666_cov_6.291743_pilon to pilon.fasta [pilon] Writing NODE_4453_length_666_cov_1.422018:1-666 changes to pilon.changes [pilon] Writing updated NODE_4453_length_666_cov_1.422018_pilon to pilon.fasta [pilon] Writing NODE_4454_length_665_cov_56.542279:1-665 changes to pilon.changes [pilon] Writing updated NODE_4454_length_665_cov_56.542279_pilon to pilon.fasta [pilon] Writing NODE_4455_length_665_cov_42.012868:1-665 changes to pilon.changes [pilon] Writing updated NODE_4455_length_665_cov_42.012868_pilon to pilon.fasta [pilon] Writing NODE_4456_length_665_cov_25.156250:1-665 changes to pilon.changes [pilon] Writing updated NODE_4456_length_665_cov_25.156250_pilon to pilon.fasta [pilon] Writing NODE_4457_length_665_cov_20.669118:1-665 changes to pilon.changes [pilon] Writing updated NODE_4457_length_665_cov_20.669118_pilon to pilon.fasta [pilon] Writing NODE_4458_length_665_cov_18.314338:1-665 changes to pilon.changes [pilon] Writing updated NODE_4458_length_665_cov_18.314338_pilon to pilon.fasta [pilon] Writing NODE_4459_length_665_cov_15.707721:1-665 changes to pilon.changes [pilon] Writing updated NODE_4459_length_665_cov_15.707721_pilon to pilon.fasta [pilon] Writing NODE_4460_length_665_cov_8.367647:1-665 changes to pilon.changes [pilon] Writing updated NODE_4460_length_665_cov_8.367647_pilon to pilon.fasta [pilon] Writing NODE_4461_length_665_cov_7.330882:1-665 changes to pilon.changes [pilon] Writing updated NODE_4461_length_665_cov_7.330882_pilon to pilon.fasta [pilon] Writing NODE_4462_length_665_cov_3.365809:1-665 changes to pilon.changes [pilon] Writing updated NODE_4462_length_665_cov_3.365809_pilon to pilon.fasta [pilon] Writing NODE_4463_length_665_cov_2.775735:1-665 changes to pilon.changes [pilon] Writing updated NODE_4463_length_665_cov_2.775735_pilon to pilon.fasta [pilon] Writing NODE_4464_length_664_cov_37.051565:1-664 changes to pilon.changes [pilon] Writing updated NODE_4464_length_664_cov_37.051565_pilon to pilon.fasta [pilon] Writing NODE_4465_length_664_cov_27.904236:1-664 changes to pilon.changes [pilon] Writing updated NODE_4465_length_664_cov_27.904236_pilon to pilon.fasta [pilon] Writing NODE_4466_length_664_cov_26.075506:1-664 changes to pilon.changes [pilon] Writing updated NODE_4466_length_664_cov_26.075506_pilon to pilon.fasta [pilon] Writing NODE_4467_length_664_cov_21.865562:1-664 changes to pilon.changes [pilon] Writing updated NODE_4467_length_664_cov_21.865562_pilon to pilon.fasta [pilon] Writing NODE_4468_length_664_cov_19.867403:1-664 changes to pilon.changes [pilon] Writing updated NODE_4468_length_664_cov_19.867403_pilon to pilon.fasta [pilon] Writing NODE_4469_length_664_cov_14.841621:1-664 changes to pilon.changes [pilon] Writing updated NODE_4469_length_664_cov_14.841621_pilon to pilon.fasta [pilon] Writing NODE_4470_length_664_cov_12.349908:1-664 changes to pilon.changes [pilon] Writing updated NODE_4470_length_664_cov_12.349908_pilon to pilon.fasta [pilon] Writing NODE_4471_length_664_cov_9.550645:1-664 changes to pilon.changes [pilon] Writing updated NODE_4471_length_664_cov_9.550645_pilon to pilon.fasta [pilon] Writing NODE_4472_length_664_cov_4.907919:1-664 changes to pilon.changes [pilon] Writing updated NODE_4472_length_664_cov_4.907919_pilon to pilon.fasta [pilon] Writing NODE_4473_length_664_cov_3.357274:1-664 changes to pilon.changes [pilon] Writing updated NODE_4473_length_664_cov_3.357274_pilon to pilon.fasta [pilon] Writing NODE_4474_length_664_cov_1.924494:1-664 changes to pilon.changes [pilon] Writing updated NODE_4474_length_664_cov_1.924494_pilon to pilon.fasta [pilon] Writing NODE_4475_length_664_cov_1.132597:1-664 changes to pilon.changes [pilon] Writing updated NODE_4475_length_664_cov_1.132597_pilon to pilon.fasta [pilon] Writing NODE_4476_length_664_cov_1.071823:1-664 changes to pilon.changes [pilon] Writing updated NODE_4476_length_664_cov_1.071823_pilon to pilon.fasta [pilon] Writing NODE_4477_length_664_cov_0.749540:1-664 changes to pilon.changes [pilon] Writing updated NODE_4477_length_664_cov_0.749540_pilon to pilon.fasta [pilon] Writing NODE_4478_length_663_cov_27.280443:1-663 changes to pilon.changes [pilon] Writing updated NODE_4478_length_663_cov_27.280443_pilon to pilon.fasta [pilon] Writing NODE_4479_length_663_cov_24.658672:1-663 changes to pilon.changes [pilon] Writing updated NODE_4479_length_663_cov_24.658672_pilon to pilon.fasta [pilon] Writing NODE_4480_length_663_cov_22.177122:1-663 changes to pilon.changes [pilon] Writing updated NODE_4480_length_663_cov_22.177122_pilon to pilon.fasta [pilon] Writing NODE_4481_length_663_cov_16.586716:1-663 changes to pilon.changes [pilon] Writing updated NODE_4481_length_663_cov_16.586716_pilon to pilon.fasta [pilon] Writing NODE_4482_length_663_cov_14.440959:1-663 changes to pilon.changes [pilon] Writing updated NODE_4482_length_663_cov_14.440959_pilon to pilon.fasta [pilon] Writing NODE_4483_length_663_cov_13.656827:1-663 changes to pilon.changes [pilon] Writing updated NODE_4483_length_663_cov_13.656827_pilon to pilon.fasta [pilon] Writing NODE_4484_length_663_cov_13.182657:1-663 changes to pilon.changes [pilon] Writing updated NODE_4484_length_663_cov_13.182657_pilon to pilon.fasta [pilon] Writing NODE_4485_length_663_cov_12.230627:1-663 changes to pilon.changes [pilon] Writing updated NODE_4485_length_663_cov_12.230627_pilon to pilon.fasta [pilon] Writing NODE_4486_length_663_cov_10.453875:1-663 changes to pilon.changes [pilon] Writing updated NODE_4486_length_663_cov_10.453875_pilon to pilon.fasta [pilon] Writing NODE_4487_length_663_cov_1.981550:1-663 changes to pilon.changes [pilon] Writing updated NODE_4487_length_663_cov_1.981550_pilon to pilon.fasta [pilon] Writing NODE_4488_length_663_cov_1.383764:1-663 changes to pilon.changes [pilon] Writing updated NODE_4488_length_663_cov_1.383764_pilon to pilon.fasta [pilon] Writing NODE_4489_length_663_cov_1.212177:1-663 changes to pilon.changes [pilon] Writing updated NODE_4489_length_663_cov_1.212177_pilon to pilon.fasta [pilon] Writing NODE_4490_length_662_cov_53.112754:1-662 changes to pilon.changes [pilon] Writing updated NODE_4490_length_662_cov_53.112754_pilon to pilon.fasta [pilon] Writing NODE_4491_length_662_cov_42.397412:1-662 changes to pilon.changes [pilon] Writing updated NODE_4491_length_662_cov_42.397412_pilon to pilon.fasta [pilon] Writing NODE_4492_length_662_cov_28.482440:1-662 changes to pilon.changes [pilon] Writing updated NODE_4492_length_662_cov_28.482440_pilon to pilon.fasta [pilon] Writing NODE_4493_length_662_cov_20.789279:1-662 changes to pilon.changes [pilon] Writing updated NODE_4493_length_662_cov_20.789279_pilon to pilon.fasta [pilon] Writing NODE_4494_length_662_cov_14.711645:1-662 changes to pilon.changes [pilon] Writing updated NODE_4494_length_662_cov_14.711645_pilon to pilon.fasta [pilon] Writing NODE_4495_length_662_cov_12.887246:1-662 changes to pilon.changes [pilon] Writing updated NODE_4495_length_662_cov_12.887246_pilon to pilon.fasta [pilon] Writing NODE_4496_length_662_cov_6.158965:1-662 changes to pilon.changes [pilon] Writing updated NODE_4496_length_662_cov_6.158965_pilon to pilon.fasta [pilon] Writing NODE_4497_length_662_cov_5.589649:1-662 changes to pilon.changes [pilon] Writing updated NODE_4497_length_662_cov_5.589649_pilon to pilon.fasta [pilon] Writing NODE_4498_length_662_cov_5.299445:1-662 changes to pilon.changes [pilon] Writing updated NODE_4498_length_662_cov_5.299445_pilon to pilon.fasta [pilon] Writing NODE_4499_length_662_cov_2.404806:1-662 changes to pilon.changes [pilon] Writing updated NODE_4499_length_662_cov_2.404806_pilon to pilon.fasta [pilon] Writing NODE_4500_length_662_cov_1.706100:1-662 changes to pilon.changes [pilon] Writing updated NODE_4500_length_662_cov_1.706100_pilon to pilon.fasta [pilon] Writing NODE_4501_length_662_cov_1.624769:1-662 changes to pilon.changes [pilon] Writing updated NODE_4501_length_662_cov_1.624769_pilon to pilon.fasta [pilon] Writing NODE_4502_length_662_cov_1.609982:1-662 changes to pilon.changes [pilon] Writing updated NODE_4502_length_662_cov_1.609982_pilon to pilon.fasta [pilon] Writing NODE_4503_length_661_cov_42.720370:1-661 changes to pilon.changes [pilon] Writing updated NODE_4503_length_661_cov_42.720370_pilon to pilon.fasta [pilon] Writing NODE_4504_length_661_cov_39.338889:1-661 changes to pilon.changes [pilon] Writing updated NODE_4504_length_661_cov_39.338889_pilon to pilon.fasta [pilon] Writing NODE_4505_length_661_cov_20.792593:1-661 changes to pilon.changes [pilon] Writing updated NODE_4505_length_661_cov_20.792593_pilon to pilon.fasta [pilon] Writing NODE_4506_length_661_cov_7.218519:1-661 changes to pilon.changes [pilon] Writing updated NODE_4506_length_661_cov_7.218519_pilon to pilon.fasta [pilon] Writing NODE_4507_length_661_cov_2.240741:1-661 changes to pilon.changes [pilon] Writing updated NODE_4507_length_661_cov_2.240741_pilon to pilon.fasta [pilon] Writing NODE_4508_length_661_cov_1.970370:1-661 changes to pilon.changes [pilon] Writing updated NODE_4508_length_661_cov_1.970370_pilon to pilon.fasta [pilon] Writing NODE_4509_length_661_cov_0.879630:1-661 changes to pilon.changes [pilon] Writing updated NODE_4509_length_661_cov_0.879630_pilon to pilon.fasta [pilon] Writing NODE_4510_length_660_cov_54.250464:1-660 changes to pilon.changes [pilon] Writing updated NODE_4510_length_660_cov_54.250464_pilon to pilon.fasta [pilon] Writing NODE_4511_length_660_cov_46.578850:1-660 changes to pilon.changes [pilon] Writing updated NODE_4511_length_660_cov_46.578850_pilon to pilon.fasta [pilon] Writing NODE_4512_length_660_cov_34.660482:1-660 changes to pilon.changes [pilon] Writing updated NODE_4512_length_660_cov_34.660482_pilon to pilon.fasta [pilon] Writing NODE_4513_length_660_cov_32.246753:1-660 changes to pilon.changes [pilon] Writing updated NODE_4513_length_660_cov_32.246753_pilon to pilon.fasta [pilon] Writing NODE_4514_length_660_cov_20.497217:1-660 changes to pilon.changes [pilon] Writing updated NODE_4514_length_660_cov_20.497217_pilon to pilon.fasta [pilon] Writing NODE_4515_length_660_cov_16.545455:1-660 changes to pilon.changes [pilon] Writing updated NODE_4515_length_660_cov_16.545455_pilon to pilon.fasta [pilon] Writing NODE_4516_length_660_cov_14.782931:1-660 changes to pilon.changes [pilon] Writing updated NODE_4516_length_660_cov_14.782931_pilon to pilon.fasta [pilon] Writing NODE_4517_length_660_cov_10.747681:1-660 changes to pilon.changes [pilon] Writing updated NODE_4517_length_660_cov_10.747681_pilon to pilon.fasta [pilon] Writing NODE_4518_length_660_cov_9.894249:1-660 changes to pilon.changes [pilon] Writing updated NODE_4518_length_660_cov_9.894249_pilon to pilon.fasta [pilon] Writing NODE_4519_length_660_cov_1.994434:1-660 changes to pilon.changes [pilon] Writing updated NODE_4519_length_660_cov_1.994434_pilon to pilon.fasta [pilon] Writing NODE_4520_length_660_cov_1.395176:1-660 changes to pilon.changes [pilon] Writing updated NODE_4520_length_660_cov_1.395176_pilon to pilon.fasta [pilon] Writing NODE_4521_length_660_cov_1.133581:1-660 changes to pilon.changes [pilon] Writing updated NODE_4521_length_660_cov_1.133581_pilon to pilon.fasta [pilon] Writing NODE_4522_length_659_cov_47.050186:1-659 changes to pilon.changes [pilon] Writing updated NODE_4522_length_659_cov_47.050186_pilon to pilon.fasta [pilon] Writing NODE_4523_length_659_cov_42.862454:1-659 changes to pilon.changes [pilon] Writing updated NODE_4523_length_659_cov_42.862454_pilon to pilon.fasta [pilon] Writing NODE_4524_length_659_cov_18.529740:1-659 changes to pilon.changes [pilon] Writing updated NODE_4524_length_659_cov_18.529740_pilon to pilon.fasta [pilon] Writing NODE_4525_length_659_cov_12.416357:1-659 changes to pilon.changes [pilon] Writing updated NODE_4525_length_659_cov_12.416357_pilon to pilon.fasta [pilon] Writing NODE_4526_length_659_cov_11.570632:1-659 changes to pilon.changes [pilon] Writing updated NODE_4526_length_659_cov_11.570632_pilon to pilon.fasta [pilon] Writing NODE_4527_length_659_cov_8.451673:1-659 changes to pilon.changes [pilon] Writing updated NODE_4527_length_659_cov_8.451673_pilon to pilon.fasta [pilon] Writing NODE_4528_length_659_cov_6.286245:1-659 changes to pilon.changes [pilon] Writing updated NODE_4528_length_659_cov_6.286245_pilon to pilon.fasta [pilon] Writing NODE_4529_length_659_cov_5.280669:1-659 changes to pilon.changes [pilon] Writing updated NODE_4529_length_659_cov_5.280669_pilon to pilon.fasta [pilon] Writing NODE_4530_length_659_cov_3.079926:1-659 changes to pilon.changes [pilon] Writing updated NODE_4530_length_659_cov_3.079926_pilon to pilon.fasta [pilon] Writing NODE_4531_length_659_cov_1.947955:1-659 changes to pilon.changes [pilon] Writing updated NODE_4531_length_659_cov_1.947955_pilon to pilon.fasta [pilon] Writing NODE_4532_length_659_cov_1.314126:1-659 changes to pilon.changes [pilon] Writing updated NODE_4532_length_659_cov_1.314126_pilon to pilon.fasta [pilon] Writing NODE_4533_length_659_cov_0.793680:1-659 changes to pilon.changes [pilon] Writing updated NODE_4533_length_659_cov_0.793680_pilon to pilon.fasta [pilon] Writing NODE_4534_length_658_cov_24.906890:1-658 changes to pilon.changes [pilon] Writing updated NODE_4534_length_658_cov_24.906890_pilon to pilon.fasta [pilon] Writing NODE_4535_length_658_cov_20.292365:1-658 changes to pilon.changes [pilon] Writing updated NODE_4535_length_658_cov_20.292365_pilon to pilon.fasta [pilon] Writing NODE_4536_length_658_cov_9.162011:1-658 changes to pilon.changes [pilon] Writing updated NODE_4536_length_658_cov_9.162011_pilon to pilon.fasta [pilon] Writing NODE_4537_length_658_cov_2.461825:1-658 changes to pilon.changes [pilon] Writing updated NODE_4537_length_658_cov_2.461825_pilon to pilon.fasta [pilon] Writing NODE_4538_length_658_cov_2.189944:1-658 changes to pilon.changes [pilon] Writing updated NODE_4538_length_658_cov_2.189944_pilon to pilon.fasta [pilon] Writing NODE_4539_length_658_cov_1.743017:1-658 changes to pilon.changes [pilon] Writing updated NODE_4539_length_658_cov_1.743017_pilon to pilon.fasta [pilon] Writing NODE_4540_length_658_cov_1.702048:1-658 changes to pilon.changes [pilon] Writing updated NODE_4540_length_658_cov_1.702048_pilon to pilon.fasta [pilon] Writing NODE_4541_length_658_cov_1.368715:1-658 changes to pilon.changes [pilon] Writing updated NODE_4541_length_658_cov_1.368715_pilon to pilon.fasta [pilon] Writing NODE_4542_length_658_cov_1.195531:1-658 changes to pilon.changes [pilon] Writing updated NODE_4542_length_658_cov_1.195531_pilon to pilon.fasta [pilon] Writing NODE_4543_length_657_cov_40.220149:1-657 changes to pilon.changes [pilon] Writing updated NODE_4543_length_657_cov_40.220149_pilon to pilon.fasta [pilon] Writing NODE_4544_length_657_cov_33.020522:1-657 changes to pilon.changes [pilon] Writing updated NODE_4544_length_657_cov_33.020522_pilon to pilon.fasta [pilon] Writing NODE_4545_length_657_cov_28.365672:1-657 changes to pilon.changes [pilon] Writing updated NODE_4545_length_657_cov_28.365672_pilon to pilon.fasta [pilon] Writing NODE_4546_length_657_cov_26.546642:1-657 changes to pilon.changes [pilon] Writing updated NODE_4546_length_657_cov_26.546642_pilon to pilon.fasta [pilon] Writing NODE_4547_length_657_cov_20.460821:1-657 changes to pilon.changes [pilon] Writing updated NODE_4547_length_657_cov_20.460821_pilon to pilon.fasta [pilon] Writing NODE_4548_length_657_cov_18.294776:1-657 changes to pilon.changes [pilon] Writing updated NODE_4548_length_657_cov_18.294776_pilon to pilon.fasta [pilon] Writing NODE_4549_length_657_cov_13.630597:1-657 changes to pilon.changes [pilon] Writing updated NODE_4549_length_657_cov_13.630597_pilon to pilon.fasta [pilon] Writing NODE_4550_length_657_cov_12.108209:1-657 changes to pilon.changes [pilon] Writing updated NODE_4550_length_657_cov_12.108209_pilon to pilon.fasta [pilon] Writing NODE_4551_length_657_cov_12.087687:1-657 changes to pilon.changes [pilon] Writing updated NODE_4551_length_657_cov_12.087687_pilon to pilon.fasta [pilon] Writing NODE_4552_length_657_cov_10.994403:1-657 changes to pilon.changes [pilon] Writing updated NODE_4552_length_657_cov_10.994403_pilon to pilon.fasta [pilon] Writing NODE_4553_length_657_cov_10.139925:1-657 changes to pilon.changes [pilon] Writing updated NODE_4553_length_657_cov_10.139925_pilon to pilon.fasta [pilon] Writing NODE_4554_length_657_cov_4.796642:1-657 changes to pilon.changes [pilon] Writing updated NODE_4554_length_657_cov_4.796642_pilon to pilon.fasta [pilon] Writing NODE_4555_length_657_cov_3.917910:1-657 changes to pilon.changes [pilon] Writing updated NODE_4555_length_657_cov_3.917910_pilon to pilon.fasta [pilon] Writing NODE_4556_length_657_cov_3.852612:1-657 changes to pilon.changes [pilon] Writing updated NODE_4556_length_657_cov_3.852612_pilon to pilon.fasta [pilon] Writing NODE_4557_length_657_cov_2.350746:1-657 changes to pilon.changes [pilon] Writing updated NODE_4557_length_657_cov_2.350746_pilon to pilon.fasta [pilon] Writing NODE_4558_length_657_cov_1.679104:1-657 changes to pilon.changes [pilon] Writing updated NODE_4558_length_657_cov_1.679104_pilon to pilon.fasta [pilon] Writing NODE_4559_length_657_cov_1.503731:1-657 changes to pilon.changes [pilon] Writing updated NODE_4559_length_657_cov_1.503731_pilon to pilon.fasta [pilon] Writing NODE_4560_length_657_cov_1.259328:1-657 changes to pilon.changes [pilon] Writing updated NODE_4560_length_657_cov_1.259328_pilon to pilon.fasta [pilon] Writing NODE_4561_length_657_cov_0.451493:1-657 changes to pilon.changes [pilon] Writing updated NODE_4561_length_657_cov_0.451493_pilon to pilon.fasta [pilon] Writing NODE_4562_length_656_cov_33.414953:1-656 changes to pilon.changes [pilon] Writing updated NODE_4562_length_656_cov_33.414953_pilon to pilon.fasta [pilon] Writing NODE_4563_length_656_cov_28.357009:1-656 changes to pilon.changes [pilon] Writing updated NODE_4563_length_656_cov_28.357009_pilon to pilon.fasta [pilon] Writing NODE_4564_length_656_cov_26.902804:1-656 changes to pilon.changes [pilon] Writing updated NODE_4564_length_656_cov_26.902804_pilon to pilon.fasta [pilon] Writing NODE_4565_length_656_cov_22.856075:1-656 changes to pilon.changes [pilon] Writing updated NODE_4565_length_656_cov_22.856075_pilon to pilon.fasta [pilon] Writing NODE_4566_length_656_cov_12.351402:1-656 changes to pilon.changes [pilon] Writing updated NODE_4566_length_656_cov_12.351402_pilon to pilon.fasta [pilon] Writing NODE_4567_length_656_cov_12.001869:1-656 changes to pilon.changes [pilon] Writing updated NODE_4567_length_656_cov_12.001869_pilon to pilon.fasta [pilon] Writing NODE_4568_length_656_cov_7.327103:1-656 changes to pilon.changes [pilon] Writing updated NODE_4568_length_656_cov_7.327103_pilon to pilon.fasta [pilon] Writing NODE_4569_length_656_cov_6.353271:1-656 changes to pilon.changes [pilon] Writing updated NODE_4569_length_656_cov_6.353271_pilon to pilon.fasta [pilon] Writing NODE_4570_length_656_cov_4.308411:1-656 changes to pilon.changes [pilon] Writing updated NODE_4570_length_656_cov_4.308411_pilon to pilon.fasta [pilon] Writing NODE_4571_length_656_cov_3.491589:1-656 changes to pilon.changes [pilon] Writing updated NODE_4571_length_656_cov_3.491589_pilon to pilon.fasta [pilon] Writing NODE_4572_length_656_cov_2.138318:1-656 changes to pilon.changes [pilon] Writing updated NODE_4572_length_656_cov_2.138318_pilon to pilon.fasta [pilon] Writing NODE_4573_length_656_cov_1.018692:1-656 changes to pilon.changes [pilon] Writing updated NODE_4573_length_656_cov_1.018692_pilon to pilon.fasta [pilon] Writing NODE_4574_length_656_cov_0.588785:1-656 changes to pilon.changes [pilon] Writing updated NODE_4574_length_656_cov_0.588785_pilon to pilon.fasta [pilon] Writing NODE_4575_length_655_cov_35.014981:1-655 changes to pilon.changes [pilon] Writing updated NODE_4575_length_655_cov_35.014981_pilon to pilon.fasta [pilon] Writing NODE_4576_length_655_cov_19.024345:1-655 changes to pilon.changes [pilon] Writing updated NODE_4576_length_655_cov_19.024345_pilon to pilon.fasta [pilon] Writing NODE_4577_length_655_cov_14.893258:1-655 changes to pilon.changes [pilon] Writing updated NODE_4577_length_655_cov_14.893258_pilon to pilon.fasta [pilon] Writing NODE_4578_length_655_cov_7.516854:1-655 changes to pilon.changes [pilon] Writing updated NODE_4578_length_655_cov_7.516854_pilon to pilon.fasta [pilon] Writing NODE_4579_length_655_cov_7.338951:1-655 changes to pilon.changes [pilon] Writing updated NODE_4579_length_655_cov_7.338951_pilon to pilon.fasta [pilon] Writing NODE_4580_length_655_cov_5.941948:1-655 changes to pilon.changes [pilon] Writing updated NODE_4580_length_655_cov_5.941948_pilon to pilon.fasta [pilon] Writing NODE_4581_length_655_cov_3.898876:1-655 changes to pilon.changes [pilon] Writing updated NODE_4581_length_655_cov_3.898876_pilon to pilon.fasta [pilon] Writing NODE_4582_length_655_cov_2.968165:1-655 changes to pilon.changes [pilon] Writing updated NODE_4582_length_655_cov_2.968165_pilon to pilon.fasta [pilon] Writing NODE_4583_length_655_cov_2.653558:1-655 changes to pilon.changes [pilon] Writing updated NODE_4583_length_655_cov_2.653558_pilon to pilon.fasta [pilon] Writing NODE_4584_length_655_cov_2.116105:1-655 changes to pilon.changes [pilon] Writing updated NODE_4584_length_655_cov_2.116105_pilon to pilon.fasta [pilon] Writing NODE_4585_length_654_cov_40.838649:1-654 changes to pilon.changes [pilon] Writing updated NODE_4585_length_654_cov_40.838649_pilon to pilon.fasta [pilon] Writing NODE_4586_length_654_cov_28.266417:1-654 changes to pilon.changes [pilon] Writing updated NODE_4586_length_654_cov_28.266417_pilon to pilon.fasta [pilon] Writing NODE_4587_length_654_cov_23.969981:1-654 changes to pilon.changes [pilon] Writing updated NODE_4587_length_654_cov_23.969981_pilon to pilon.fasta [pilon] Writing NODE_4588_length_654_cov_22.120075:1-654 changes to pilon.changes [pilon] Writing updated NODE_4588_length_654_cov_22.120075_pilon to pilon.fasta [pilon] Writing NODE_4589_length_654_cov_19.093809:1-654 changes to pilon.changes [pilon] Writing updated NODE_4589_length_654_cov_19.093809_pilon to pilon.fasta [pilon] Writing NODE_4590_length_654_cov_18.249531:1-654 changes to pilon.changes [pilon] Writing updated NODE_4590_length_654_cov_18.249531_pilon to pilon.fasta [pilon] Writing NODE_4591_length_654_cov_16.118199:1-654 changes to pilon.changes [pilon] Writing updated NODE_4591_length_654_cov_16.118199_pilon to pilon.fasta [pilon] Writing NODE_4592_length_654_cov_13.110694:1-654 changes to pilon.changes [pilon] Writing updated NODE_4592_length_654_cov_13.110694_pilon to pilon.fasta [pilon] Writing NODE_4593_length_654_cov_12.821764:1-654 changes to pilon.changes [pilon] Writing updated NODE_4593_length_654_cov_12.821764_pilon to pilon.fasta [pilon] Writing NODE_4594_length_654_cov_6.510319:1-654 changes to pilon.changes [pilon] Writing updated NODE_4594_length_654_cov_6.510319_pilon to pilon.fasta [pilon] Writing NODE_4595_length_654_cov_6.377111:1-654 changes to pilon.changes [pilon] Writing updated NODE_4595_length_654_cov_6.377111_pilon to pilon.fasta [pilon] Writing NODE_4596_length_654_cov_5.947467:1-654 changes to pilon.changes [pilon] Writing updated NODE_4596_length_654_cov_5.947467_pilon to pilon.fasta [pilon] Writing NODE_4597_length_653_cov_32.084586:1-653 changes to pilon.changes [pilon] Writing updated NODE_4597_length_653_cov_32.084586_pilon to pilon.fasta [pilon] Writing NODE_4598_length_653_cov_21.289474:1-653 changes to pilon.changes [pilon] Writing updated NODE_4598_length_653_cov_21.289474_pilon to pilon.fasta [pilon] Writing NODE_4599_length_653_cov_11.488722:1-653 changes to pilon.changes [pilon] Writing updated NODE_4599_length_653_cov_11.488722_pilon to pilon.fasta [pilon] Writing NODE_4600_length_653_cov_2.960526:1-653 changes to pilon.changes [pilon] Writing updated NODE_4600_length_653_cov_2.960526_pilon to pilon.fasta [pilon] Writing NODE_4601_length_653_cov_1.270677:1-653 changes to pilon.changes [pilon] Writing updated NODE_4601_length_653_cov_1.270677_pilon to pilon.fasta [pilon] Writing NODE_4602_length_653_cov_1.101504:1-653 changes to pilon.changes [pilon] Writing updated NODE_4602_length_653_cov_1.101504_pilon to pilon.fasta [pilon] Writing NODE_4603_length_652_cov_48.280603:1-652 changes to pilon.changes [pilon] Writing updated NODE_4603_length_652_cov_48.280603_pilon to pilon.fasta [pilon] Writing NODE_4604_length_652_cov_42.024482:1-652 changes to pilon.changes [pilon] Writing updated NODE_4604_length_652_cov_42.024482_pilon to pilon.fasta [pilon] Writing NODE_4605_length_652_cov_17.229755:1-652 changes to pilon.changes [pilon] Writing updated NODE_4605_length_652_cov_17.229755_pilon to pilon.fasta [pilon] Writing NODE_4606_length_652_cov_11.853107:1-652 changes to pilon.changes [pilon] Writing updated NODE_4606_length_652_cov_11.853107_pilon to pilon.fasta [pilon] Writing NODE_4607_length_652_cov_9.419962:1-652 changes to pilon.changes [pilon] Writing updated NODE_4607_length_652_cov_9.419962_pilon to pilon.fasta [pilon] Writing NODE_4608_length_652_cov_5.472693:1-652 changes to pilon.changes [pilon] Writing updated NODE_4608_length_652_cov_5.472693_pilon to pilon.fasta [pilon] Writing NODE_4609_length_652_cov_1.627119:1-652 changes to pilon.changes [pilon] Writing updated NODE_4609_length_652_cov_1.627119_pilon to pilon.fasta [pilon] Writing NODE_4610_length_652_cov_1.244821:1-652 changes to pilon.changes [pilon] Writing updated NODE_4610_length_652_cov_1.244821_pilon to pilon.fasta [pilon] Writing NODE_4611_length_651_cov_50.939623:1-651 changes to pilon.changes [pilon] Writing updated NODE_4611_length_651_cov_50.939623_pilon to pilon.fasta [pilon] Writing NODE_4612_length_651_cov_49.401887:1-651 changes to pilon.changes [pilon] Writing updated NODE_4612_length_651_cov_49.401887_pilon to pilon.fasta [pilon] Writing NODE_4613_length_651_cov_42.813208:1-651 changes to pilon.changes [pilon] Writing updated NODE_4613_length_651_cov_42.813208_pilon to pilon.fasta [pilon] Writing NODE_4614_length_651_cov_28.675472:1-651 changes to pilon.changes [pilon] Writing updated NODE_4614_length_651_cov_28.675472_pilon to pilon.fasta [pilon] Writing NODE_4615_length_651_cov_27.198113:1-651 changes to pilon.changes [pilon] Writing updated NODE_4615_length_651_cov_27.198113_pilon to pilon.fasta [pilon] Writing NODE_4616_length_651_cov_24.662264:1-651 changes to pilon.changes [pilon] Writing updated NODE_4616_length_651_cov_24.662264_pilon to pilon.fasta [pilon] Writing NODE_4617_length_651_cov_12.994340:1-651 changes to pilon.changes [pilon] Writing updated NODE_4617_length_651_cov_12.994340_pilon to pilon.fasta [pilon] Writing NODE_4618_length_651_cov_9.292453:1-651 changes to pilon.changes [pilon] Writing updated NODE_4618_length_651_cov_9.292453_pilon to pilon.fasta [pilon] Writing NODE_4619_length_651_cov_6.992453:1-651 changes to pilon.changes [pilon] Writing updated NODE_4619_length_651_cov_6.992453_pilon to pilon.fasta [pilon] Writing NODE_4620_length_651_cov_2.535849:1-651 changes to pilon.changes [pilon] Writing updated NODE_4620_length_651_cov_2.535849_pilon to pilon.fasta [pilon] Writing NODE_4621_length_651_cov_1.430189:1-651 changes to pilon.changes [pilon] Writing updated NODE_4621_length_651_cov_1.430189_pilon to pilon.fasta [pilon] Writing NODE_4622_length_650_cov_25.081285:1-650 changes to pilon.changes [pilon] Writing updated NODE_4622_length_650_cov_25.081285_pilon to pilon.fasta [pilon] Writing NODE_4623_length_650_cov_23.873346:1-650 changes to pilon.changes [pilon] Writing updated NODE_4623_length_650_cov_23.873346_pilon to pilon.fasta [pilon] Writing NODE_4624_length_650_cov_6.841210:1-650 changes to pilon.changes [pilon] Writing updated NODE_4624_length_650_cov_6.841210_pilon to pilon.fasta [pilon] Writing NODE_4625_length_650_cov_4.886578:1-650 changes to pilon.changes [pilon] Writing updated NODE_4625_length_650_cov_4.886578_pilon to pilon.fasta [pilon] Writing NODE_4626_length_650_cov_3.026465:1-650 changes to pilon.changes [pilon] Writing updated NODE_4626_length_650_cov_3.026465_pilon to pilon.fasta [pilon] Writing NODE_4627_length_650_cov_1.525520:1-650 changes to pilon.changes [pilon] Writing updated NODE_4627_length_650_cov_1.525520_pilon to pilon.fasta [pilon] Writing NODE_4628_length_650_cov_1.149338:1-650 changes to pilon.changes [pilon] Writing updated NODE_4628_length_650_cov_1.149338_pilon to pilon.fasta [pilon] Writing NODE_4629_length_650_cov_0.971645:1-650 changes to pilon.changes [pilon] Writing updated NODE_4629_length_650_cov_0.971645_pilon to pilon.fasta [pilon] Writing NODE_4630_length_649_cov_21.647727:1-649 changes to pilon.changes [pilon] Writing updated NODE_4630_length_649_cov_21.647727_pilon to pilon.fasta [pilon] Writing NODE_4631_length_649_cov_18.982955:1-649 changes to pilon.changes [pilon] Writing updated NODE_4631_length_649_cov_18.982955_pilon to pilon.fasta [pilon] Writing NODE_4632_length_649_cov_11.638258:1-649 changes to pilon.changes [pilon] Writing updated NODE_4632_length_649_cov_11.638258_pilon to pilon.fasta [pilon] Writing NODE_4633_length_649_cov_7.975379:1-649 changes to pilon.changes [pilon] Writing updated NODE_4633_length_649_cov_7.975379_pilon to pilon.fasta [pilon] Writing NODE_4634_length_649_cov_5.541667:1-649 changes to pilon.changes [pilon] Writing updated NODE_4634_length_649_cov_5.541667_pilon to pilon.fasta [pilon] Writing NODE_4635_length_649_cov_3.439394:1-649 changes to pilon.changes [pilon] Writing updated NODE_4635_length_649_cov_3.439394_pilon to pilon.fasta [pilon] Writing NODE_4636_length_649_cov_1.861742:1-649 changes to pilon.changes [pilon] Writing updated NODE_4636_length_649_cov_1.861742_pilon to pilon.fasta [pilon] Writing NODE_4637_length_649_cov_1.714015:1-649 changes to pilon.changes [pilon] Writing updated NODE_4637_length_649_cov_1.714015_pilon to pilon.fasta [pilon] Writing NODE_4638_length_649_cov_0.623106:1-649 changes to pilon.changes [pilon] Writing updated NODE_4638_length_649_cov_0.623106_pilon to pilon.fasta [pilon] Writing NODE_4639_length_648_cov_31.977230:1-648 changes to pilon.changes [pilon] Writing updated NODE_4639_length_648_cov_31.977230_pilon to pilon.fasta [pilon] Writing NODE_4640_length_648_cov_29.091082:1-648 changes to pilon.changes [pilon] Writing updated NODE_4640_length_648_cov_29.091082_pilon to pilon.fasta [pilon] Writing NODE_4641_length_648_cov_25.404175:1-648 changes to pilon.changes [pilon] Writing updated NODE_4641_length_648_cov_25.404175_pilon to pilon.fasta [pilon] Writing NODE_4642_length_648_cov_21.946869:1-648 changes to pilon.changes [pilon] Writing updated NODE_4642_length_648_cov_21.946869_pilon to pilon.fasta [pilon] Writing NODE_4643_length_648_cov_19.265655:1-648 changes to pilon.changes [pilon] Writing updated NODE_4643_length_648_cov_19.265655_pilon to pilon.fasta [pilon] Writing NODE_4644_length_648_cov_19.227704:1-648 changes to pilon.changes [pilon] Writing updated NODE_4644_length_648_cov_19.227704_pilon to pilon.fasta [pilon] Writing NODE_4645_length_648_cov_18.595825:1-648 changes to pilon.changes [pilon] Writing updated NODE_4645_length_648_cov_18.595825_pilon to pilon.fasta [pilon] Writing NODE_4646_length_648_cov_17.931689:1-648 changes to pilon.changes [pilon] Writing updated NODE_4646_length_648_cov_17.931689_pilon to pilon.fasta [pilon] Writing NODE_4647_length_648_cov_13.271347:1-648 changes to pilon.changes [pilon] Writing updated NODE_4647_length_648_cov_13.271347_pilon to pilon.fasta [pilon] Writing NODE_4648_length_648_cov_10.998102:1-648 changes to pilon.changes [pilon] Writing updated NODE_4648_length_648_cov_10.998102_pilon to pilon.fasta [pilon] Writing NODE_4649_length_648_cov_8.884250:1-648 changes to pilon.changes [pilon] Writing updated NODE_4649_length_648_cov_8.884250_pilon to pilon.fasta [pilon] Writing NODE_4650_length_648_cov_7.070209:1-648 changes to pilon.changes [pilon] Writing updated NODE_4650_length_648_cov_7.070209_pilon to pilon.fasta [pilon] Writing NODE_4651_length_648_cov_4.960152:1-648 changes to pilon.changes [pilon] Writing updated NODE_4651_length_648_cov_4.960152_pilon to pilon.fasta [pilon] Writing NODE_4652_length_648_cov_4.907021:1-648 changes to pilon.changes [pilon] Writing updated NODE_4652_length_648_cov_4.907021_pilon to pilon.fasta [pilon] Writing NODE_4653_length_648_cov_3.259962:1-648 changes to pilon.changes [pilon] Writing updated NODE_4653_length_648_cov_3.259962_pilon to pilon.fasta [pilon] Writing NODE_4654_length_648_cov_2.557875:1-648 changes to pilon.changes [pilon] Writing updated NODE_4654_length_648_cov_2.557875_pilon to pilon.fasta [pilon] Writing NODE_4655_length_648_cov_1.521822:1-648 changes to pilon.changes [pilon] Writing updated NODE_4655_length_648_cov_1.521822_pilon to pilon.fasta [pilon] Writing NODE_4656_length_648_cov_0.690702:1-648 changes to pilon.changes [pilon] Writing updated NODE_4656_length_648_cov_0.690702_pilon to pilon.fasta [pilon] Writing NODE_4657_length_648_cov_0.681214:1-648 changes to pilon.changes [pilon] Writing updated NODE_4657_length_648_cov_0.681214_pilon to pilon.fasta [pilon] Writing NODE_4658_length_647_cov_27.836502:1-647 changes to pilon.changes [pilon] Writing updated NODE_4658_length_647_cov_27.836502_pilon to pilon.fasta [pilon] Writing NODE_4659_length_647_cov_27.488593:1-647 changes to pilon.changes [pilon] Writing updated NODE_4659_length_647_cov_27.488593_pilon to pilon.fasta [pilon] Writing NODE_4660_length_647_cov_20.374525:1-647 changes to pilon.changes [pilon] Writing updated NODE_4660_length_647_cov_20.374525_pilon to pilon.fasta [pilon] Writing NODE_4661_length_647_cov_17.471483:1-647 changes to pilon.changes [pilon] Writing updated NODE_4661_length_647_cov_17.471483_pilon to pilon.fasta [pilon] Writing NODE_4662_length_647_cov_15.463878:1-647 changes to pilon.changes [pilon] Writing updated NODE_4662_length_647_cov_15.463878_pilon to pilon.fasta [pilon] Writing NODE_4663_length_647_cov_4.022814:1-647 changes to pilon.changes [pilon] Writing updated NODE_4663_length_647_cov_4.022814_pilon to pilon.fasta [pilon] Writing NODE_4664_length_647_cov_2.954373:1-647 changes to pilon.changes [pilon] Writing updated NODE_4664_length_647_cov_2.954373_pilon to pilon.fasta [pilon] Writing NODE_4665_length_647_cov_2.821293:1-647 changes to pilon.changes [pilon] Writing updated NODE_4665_length_647_cov_2.821293_pilon to pilon.fasta [pilon] Writing NODE_4666_length_647_cov_1.967681:1-647 changes to pilon.changes [pilon] Writing updated NODE_4666_length_647_cov_1.967681_pilon to pilon.fasta [pilon] Writing NODE_4667_length_647_cov_1.245247:1-647 changes to pilon.changes [pilon] Writing updated NODE_4667_length_647_cov_1.245247_pilon to pilon.fasta [pilon] Writing NODE_4668_length_647_cov_1.001901:1-647 changes to pilon.changes [pilon] Writing updated NODE_4668_length_647_cov_1.001901_pilon to pilon.fasta [pilon] Writing NODE_4669_length_647_cov_0.796578:1-647 changes to pilon.changes [pilon] Writing updated NODE_4669_length_647_cov_0.796578_pilon to pilon.fasta [pilon] Writing NODE_4670_length_646_cov_36.752381:1-646 changes to pilon.changes [pilon] Writing updated NODE_4670_length_646_cov_36.752381_pilon to pilon.fasta [pilon] Writing NODE_4671_length_646_cov_23.716190:1-646 changes to pilon.changes [pilon] Writing updated NODE_4671_length_646_cov_23.716190_pilon to pilon.fasta [pilon] Writing NODE_4672_length_646_cov_22.798095:1-646 changes to pilon.changes [pilon] Writing updated NODE_4672_length_646_cov_22.798095_pilon to pilon.fasta [pilon] Writing NODE_4673_length_646_cov_16.678095:1-646 changes to pilon.changes [pilon] Writing updated NODE_4673_length_646_cov_16.678095_pilon to pilon.fasta [pilon] Writing NODE_4674_length_646_cov_2.339048:1-646 changes to pilon.changes [pilon] Writing updated NODE_4674_length_646_cov_2.339048_pilon to pilon.fasta [pilon] Writing NODE_4675_length_645_cov_39.889313:1-645 changes to pilon.changes [pilon] Writing updated NODE_4675_length_645_cov_39.889313_pilon to pilon.fasta [pilon] Writing NODE_4676_length_645_cov_34.070611:1-645 changes to pilon.changes [pilon] Writing updated NODE_4676_length_645_cov_34.070611_pilon to pilon.fasta [pilon] Writing NODE_4677_length_645_cov_24.427481:1-645 changes to pilon.changes [pilon] Writing updated NODE_4677_length_645_cov_24.427481_pilon to pilon.fasta [pilon] Writing NODE_4678_length_645_cov_22.875954:1-645 changes to pilon.changes [pilon] Writing updated NODE_4678_length_645_cov_22.875954_pilon to pilon.fasta [pilon] Writing NODE_4679_length_645_cov_17.736641:1-645 changes to pilon.changes [pilon] Writing updated NODE_4679_length_645_cov_17.736641_pilon to pilon.fasta [pilon] Writing NODE_4680_length_645_cov_14.370229:1-645 changes to pilon.changes [pilon] Writing updated NODE_4680_length_645_cov_14.370229_pilon to pilon.fasta [pilon] Writing NODE_4681_length_645_cov_7.786260:1-645 changes to pilon.changes [pilon] Writing updated NODE_4681_length_645_cov_7.786260_pilon to pilon.fasta [pilon] Writing NODE_4682_length_645_cov_3.074427:1-645 changes to pilon.changes [pilon] Writing updated NODE_4682_length_645_cov_3.074427_pilon to pilon.fasta [pilon] Writing NODE_4683_length_645_cov_2.681298:1-645 changes to pilon.changes [pilon] Writing updated NODE_4683_length_645_cov_2.681298_pilon to pilon.fasta [pilon] Writing NODE_4684_length_645_cov_1.124046:1-645 changes to pilon.changes [pilon] Writing updated NODE_4684_length_645_cov_1.124046_pilon to pilon.fasta [pilon] Writing NODE_4685_length_645_cov_1.097328:1-645 changes to pilon.changes [pilon] Writing updated NODE_4685_length_645_cov_1.097328_pilon to pilon.fasta [pilon] Writing NODE_4686_length_644_cov_58.697897:1-644 changes to pilon.changes [pilon] Writing updated NODE_4686_length_644_cov_58.697897_pilon to pilon.fasta [pilon] Writing NODE_4687_length_644_cov_19.143403:1-644 changes to pilon.changes [pilon] Writing updated NODE_4687_length_644_cov_19.143403_pilon to pilon.fasta [pilon] Writing NODE_4688_length_644_cov_18.701721:1-644 changes to pilon.changes [pilon] Writing updated NODE_4688_length_644_cov_18.701721_pilon to pilon.fasta [pilon] Writing NODE_4689_length_644_cov_8.122371:1-644 changes to pilon.changes [pilon] Writing updated NODE_4689_length_644_cov_8.122371_pilon to pilon.fasta [pilon] Writing NODE_4690_length_644_cov_3.372849:1-644 changes to pilon.changes [pilon] Writing updated NODE_4690_length_644_cov_3.372849_pilon to pilon.fasta [pilon] Writing NODE_4691_length_644_cov_2.562141:1-644 changes to pilon.changes [pilon] Writing updated NODE_4691_length_644_cov_2.562141_pilon to pilon.fasta [pilon] Writing NODE_4692_length_644_cov_2.166348:1-644 changes to pilon.changes [pilon] Writing updated NODE_4692_length_644_cov_2.166348_pilon to pilon.fasta [pilon] Writing NODE_4693_length_644_cov_1.957935:1-644 changes to pilon.changes [pilon] Writing updated NODE_4693_length_644_cov_1.957935_pilon to pilon.fasta [pilon] Writing NODE_4694_length_644_cov_1.374761:1-644 changes to pilon.changes [pilon] Writing updated NODE_4694_length_644_cov_1.374761_pilon to pilon.fasta [pilon] Writing NODE_4695_length_644_cov_1.183556:1-644 changes to pilon.changes [pilon] Writing updated NODE_4695_length_644_cov_1.183556_pilon to pilon.fasta [pilon] Writing NODE_4696_length_644_cov_1.137667:1-644 changes to pilon.changes [pilon] Writing updated NODE_4696_length_644_cov_1.137667_pilon to pilon.fasta [pilon] Writing NODE_4697_length_643_cov_32.618774:1-643 changes to pilon.changes [pilon] Writing updated NODE_4697_length_643_cov_32.618774_pilon to pilon.fasta [pilon] Writing NODE_4698_length_643_cov_25.896552:1-643 changes to pilon.changes [pilon] Writing updated NODE_4698_length_643_cov_25.896552_pilon to pilon.fasta [pilon] Writing NODE_4699_length_643_cov_22.676245:1-643 changes to pilon.changes [pilon] Writing updated NODE_4699_length_643_cov_22.676245_pilon to pilon.fasta [pilon] Writing NODE_4700_length_643_cov_15.528736:1-643 changes to pilon.changes [pilon] Writing updated NODE_4700_length_643_cov_15.528736_pilon to pilon.fasta [pilon] Writing NODE_4701_length_643_cov_11.768199:1-643 changes to pilon.changes [pilon] Writing updated NODE_4701_length_643_cov_11.768199_pilon to pilon.fasta [pilon] Writing NODE_4702_length_643_cov_9.266284:1-643 changes to pilon.changes [pilon] Writing updated NODE_4702_length_643_cov_9.266284_pilon to pilon.fasta [pilon] Writing NODE_4703_length_643_cov_2.582375:1-643 changes to pilon.changes [pilon] Writing updated NODE_4703_length_643_cov_2.582375_pilon to pilon.fasta [pilon] Writing NODE_4704_length_643_cov_2.513410:1-643 changes to pilon.changes [pilon] Writing updated NODE_4704_length_643_cov_2.513410_pilon to pilon.fasta [pilon] Writing NODE_4705_length_643_cov_1.936782:1-643 changes to pilon.changes [pilon] Writing updated NODE_4705_length_643_cov_1.936782_pilon to pilon.fasta [pilon] Writing NODE_4706_length_643_cov_1.017241:1-643 changes to pilon.changes [pilon] Writing updated NODE_4706_length_643_cov_1.017241_pilon to pilon.fasta [pilon] Writing NODE_4707_length_643_cov_0.808429:1-643 changes to pilon.changes [pilon] Writing updated NODE_4707_length_643_cov_0.808429_pilon to pilon.fasta [pilon] Writing NODE_4708_length_643_cov_0.605364:1-643 changes to pilon.changes [pilon] Writing updated NODE_4708_length_643_cov_0.605364_pilon to pilon.fasta [pilon] Writing NODE_4709_length_642_cov_29.905950:1-642 changes to pilon.changes [pilon] Writing updated NODE_4709_length_642_cov_29.905950_pilon to pilon.fasta [pilon] Writing NODE_4710_length_642_cov_27.303263:1-642 changes to pilon.changes [pilon] Writing updated NODE_4710_length_642_cov_27.303263_pilon to pilon.fasta [pilon] Writing NODE_4711_length_642_cov_26.067179:1-642 changes to pilon.changes [pilon] Writing updated NODE_4711_length_642_cov_26.067179_pilon to pilon.fasta [pilon] Writing NODE_4712_length_642_cov_23.103647:1-642 changes to pilon.changes [pilon] Writing updated NODE_4712_length_642_cov_23.103647_pilon to pilon.fasta [pilon] Writing NODE_4713_length_642_cov_18.166987:1-642 changes to pilon.changes [pilon] Writing updated NODE_4713_length_642_cov_18.166987_pilon to pilon.fasta [pilon] Writing NODE_4714_length_642_cov_17.635317:1-642 changes to pilon.changes [pilon] Writing updated NODE_4714_length_642_cov_17.635317_pilon to pilon.fasta [pilon] Writing NODE_4715_length_642_cov_16.092131:1-642 changes to pilon.changes [pilon] Writing updated NODE_4715_length_642_cov_16.092131_pilon to pilon.fasta [pilon] Writing NODE_4716_length_642_cov_11.032630:1-642 changes to pilon.changes [pilon] Writing updated NODE_4716_length_642_cov_11.032630_pilon to pilon.fasta [pilon] Writing NODE_4717_length_642_cov_3.097889:1-642 changes to pilon.changes [pilon] Writing updated NODE_4717_length_642_cov_3.097889_pilon to pilon.fasta [pilon] Writing NODE_4718_length_642_cov_1.556622:1-642 changes to pilon.changes [pilon] Writing updated NODE_4718_length_642_cov_1.556622_pilon to pilon.fasta [pilon] Writing NODE_4719_length_642_cov_1.289827:1-642 changes to pilon.changes [pilon] Writing updated NODE_4719_length_642_cov_1.289827_pilon to pilon.fasta [pilon] Writing NODE_4720_length_641_cov_38.919231:1-641 changes to pilon.changes [pilon] Writing updated NODE_4720_length_641_cov_38.919231_pilon to pilon.fasta [pilon] Writing NODE_4721_length_641_cov_32.642308:1-641 changes to pilon.changes [pilon] Writing updated NODE_4721_length_641_cov_32.642308_pilon to pilon.fasta [pilon] Writing NODE_4722_length_641_cov_25.850000:1-641 changes to pilon.changes [pilon] Writing updated NODE_4722_length_641_cov_25.850000_pilon to pilon.fasta [pilon] Writing NODE_4723_length_641_cov_21.880769:1-641 changes to pilon.changes [pilon] Writing updated NODE_4723_length_641_cov_21.880769_pilon to pilon.fasta [pilon] Writing NODE_4724_length_641_cov_17.769231:1-641 changes to pilon.changes [pilon] Writing updated NODE_4724_length_641_cov_17.769231_pilon to pilon.fasta [pilon] Writing NODE_4725_length_641_cov_17.663462:1-641 changes to pilon.changes [pilon] Writing updated NODE_4725_length_641_cov_17.663462_pilon to pilon.fasta [pilon] Writing NODE_4726_length_641_cov_16.476923:1-641 changes to pilon.changes [pilon] Writing updated NODE_4726_length_641_cov_16.476923_pilon to pilon.fasta [pilon] Writing NODE_4727_length_641_cov_12.203846:1-641 changes to pilon.changes [pilon] Writing updated NODE_4727_length_641_cov_12.203846_pilon to pilon.fasta [pilon] Writing NODE_4728_length_641_cov_11.692308:1-641 changes to pilon.changes [pilon] Writing updated NODE_4728_length_641_cov_11.692308_pilon to pilon.fasta [pilon] Writing NODE_4729_length_641_cov_4.040385:1-641 changes to pilon.changes [pilon] Writing updated NODE_4729_length_641_cov_4.040385_pilon to pilon.fasta [pilon] Writing NODE_4730_length_641_cov_3.821154:1-641 changes to pilon.changes [pilon] Writing updated NODE_4730_length_641_cov_3.821154_pilon to pilon.fasta [pilon] Writing NODE_4731_length_641_cov_1.334615:1-641 changes to pilon.changes [pilon] Writing updated NODE_4731_length_641_cov_1.334615_pilon to pilon.fasta [pilon] Writing NODE_4732_length_641_cov_1.257692:1-641 changes to pilon.changes [pilon] Writing updated NODE_4732_length_641_cov_1.257692_pilon to pilon.fasta [pilon] Writing NODE_4733_length_641_cov_0.788462:1-641 changes to pilon.changes [pilon] Writing updated NODE_4733_length_641_cov_0.788462_pilon to pilon.fasta [pilon] Writing NODE_4734_length_640_cov_69.685934:1-640 changes to pilon.changes [pilon] Writing updated NODE_4734_length_640_cov_69.685934_pilon to pilon.fasta [pilon] Writing NODE_4735_length_640_cov_56.306358:1-640 changes to pilon.changes [pilon] Writing updated NODE_4735_length_640_cov_56.306358_pilon to pilon.fasta [pilon] Writing NODE_4736_length_640_cov_48.834297:1-640 changes to pilon.changes [pilon] Writing updated NODE_4736_length_640_cov_48.834297_pilon to pilon.fasta [pilon] Writing NODE_4737_length_640_cov_22.874759:1-640 changes to pilon.changes [pilon] Writing updated NODE_4737_length_640_cov_22.874759_pilon to pilon.fasta [pilon] Writing NODE_4738_length_640_cov_15.919075:1-640 changes to pilon.changes [pilon] Writing updated NODE_4738_length_640_cov_15.919075_pilon to pilon.fasta [pilon] Writing NODE_4739_length_640_cov_3.909441:1-640 changes to pilon.changes [pilon] Writing updated NODE_4739_length_640_cov_3.909441_pilon to pilon.fasta [pilon] Writing NODE_4740_length_640_cov_3.541426:1-640 changes to pilon.changes [pilon] Writing updated NODE_4740_length_640_cov_3.541426_pilon to pilon.fasta [pilon] Writing NODE_4741_length_640_cov_3.028902:1-640 changes to pilon.changes [pilon] Writing updated NODE_4741_length_640_cov_3.028902_pilon to pilon.fasta [pilon] Writing NODE_4742_length_640_cov_0.641618:1-640 changes to pilon.changes [pilon] Writing updated NODE_4742_length_640_cov_0.641618_pilon to pilon.fasta [pilon] Writing NODE_4743_length_639_cov_48.839768:1-639 changes to pilon.changes [pilon] Writing updated NODE_4743_length_639_cov_48.839768_pilon to pilon.fasta [pilon] Writing NODE_4744_length_639_cov_36.173745:1-639 changes to pilon.changes [pilon] Writing updated NODE_4744_length_639_cov_36.173745_pilon to pilon.fasta [pilon] Writing NODE_4745_length_639_cov_32.710425:1-639 changes to pilon.changes [pilon] Writing updated NODE_4745_length_639_cov_32.710425_pilon to pilon.fasta [pilon] Writing NODE_4746_length_639_cov_26.054054:1-639 changes to pilon.changes [pilon] Writing updated NODE_4746_length_639_cov_26.054054_pilon to pilon.fasta [pilon] Writing NODE_4747_length_639_cov_23.069498:1-639 changes to pilon.changes [pilon] Writing updated NODE_4747_length_639_cov_23.069498_pilon to pilon.fasta [pilon] Writing NODE_4748_length_639_cov_20.231660:1-639 changes to pilon.changes [pilon] Writing updated NODE_4748_length_639_cov_20.231660_pilon to pilon.fasta [pilon] Writing NODE_4749_length_639_cov_19.623552:1-639 changes to pilon.changes [pilon] Writing updated NODE_4749_length_639_cov_19.623552_pilon to pilon.fasta [pilon] Writing NODE_4750_length_639_cov_19.160232:1-639 changes to pilon.changes [pilon] Writing updated NODE_4750_length_639_cov_19.160232_pilon to pilon.fasta [pilon] Writing NODE_4751_length_639_cov_18.795367:1-639 changes to pilon.changes [pilon] Writing updated NODE_4751_length_639_cov_18.795367_pilon to pilon.fasta [pilon] Writing NODE_4752_length_639_cov_17.820463:1-639 changes to pilon.changes [pilon] Writing updated NODE_4752_length_639_cov_17.820463_pilon to pilon.fasta [pilon] Writing NODE_4753_length_639_cov_11.754826:1-639 changes to pilon.changes [pilon] Writing updated NODE_4753_length_639_cov_11.754826_pilon to pilon.fasta [pilon] Writing NODE_4754_length_639_cov_8.673745:1-639 changes to pilon.changes [pilon] Writing updated NODE_4754_length_639_cov_8.673745_pilon to pilon.fasta [pilon] Writing NODE_4755_length_639_cov_3.654440:1-639 changes to pilon.changes [pilon] Writing updated NODE_4755_length_639_cov_3.654440_pilon to pilon.fasta [pilon] Writing NODE_4756_length_639_cov_2.552124:1-639 changes to pilon.changes [pilon] Writing updated NODE_4756_length_639_cov_2.552124_pilon to pilon.fasta [pilon] Writing NODE_4757_length_639_cov_2.544402:1-639 changes to pilon.changes [pilon] Writing updated NODE_4757_length_639_cov_2.544402_pilon to pilon.fasta [pilon] Writing NODE_4758_length_639_cov_2.119691:1-639 changes to pilon.changes [pilon] Writing updated NODE_4758_length_639_cov_2.119691_pilon to pilon.fasta [pilon] Writing NODE_4759_length_639_cov_1.760618:1-639 changes to pilon.changes [pilon] Writing updated NODE_4759_length_639_cov_1.760618_pilon to pilon.fasta [pilon] Writing NODE_4760_length_639_cov_0.814672:1-639 changes to pilon.changes [pilon] Writing updated NODE_4760_length_639_cov_0.814672_pilon to pilon.fasta [pilon] Writing NODE_4761_length_638_cov_35.702128:1-638 changes to pilon.changes [pilon] Writing updated NODE_4761_length_638_cov_35.702128_pilon to pilon.fasta [pilon] Writing NODE_4762_length_638_cov_30.967118:1-638 changes to pilon.changes [pilon] Writing updated NODE_4762_length_638_cov_30.967118_pilon to pilon.fasta [pilon] Writing NODE_4763_length_638_cov_25.232108:1-638 changes to pilon.changes [pilon] Writing updated NODE_4763_length_638_cov_25.232108_pilon to pilon.fasta [pilon] Writing NODE_4764_length_638_cov_22.237911:1-638 changes to pilon.changes [pilon] Writing updated NODE_4764_length_638_cov_22.237911_pilon to pilon.fasta [pilon] Writing NODE_4765_length_638_cov_15.435203:1-638 changes to pilon.changes [pilon] Writing updated NODE_4765_length_638_cov_15.435203_pilon to pilon.fasta [pilon] Writing NODE_4766_length_638_cov_12.959381:1-638 changes to pilon.changes [pilon] Writing updated NODE_4766_length_638_cov_12.959381_pilon to pilon.fasta [pilon] Writing NODE_4767_length_638_cov_12.040619:1-638 changes to pilon.changes [pilon] Writing updated NODE_4767_length_638_cov_12.040619_pilon to pilon.fasta [pilon] Writing NODE_4768_length_638_cov_2.812379:1-638 changes to pilon.changes [pilon] Writing updated NODE_4768_length_638_cov_2.812379_pilon to pilon.fasta [pilon] Writing NODE_4769_length_638_cov_2.545455:1-638 changes to pilon.changes [pilon] Writing updated NODE_4769_length_638_cov_2.545455_pilon to pilon.fasta [pilon] Writing NODE_4770_length_638_cov_1.783366:1-638 changes to pilon.changes [pilon] Writing updated NODE_4770_length_638_cov_1.783366_pilon to pilon.fasta [pilon] Writing NODE_4771_length_637_cov_47.127907:1-637 changes to pilon.changes [pilon] Writing updated NODE_4771_length_637_cov_47.127907_pilon to pilon.fasta [pilon] Writing NODE_4772_length_637_cov_20.901163:1-637 changes to pilon.changes [pilon] Writing updated NODE_4772_length_637_cov_20.901163_pilon to pilon.fasta [pilon] Writing NODE_4773_length_637_cov_19.565891:1-637 changes to pilon.changes [pilon] Writing updated NODE_4773_length_637_cov_19.565891_pilon to pilon.fasta [pilon] Writing NODE_4774_length_637_cov_19.343023:1-637 changes to pilon.changes [pilon] Writing updated NODE_4774_length_637_cov_19.343023_pilon to pilon.fasta [pilon] Writing NODE_4775_length_637_cov_11.350775:1-637 changes to pilon.changes [pilon] Writing updated NODE_4775_length_637_cov_11.350775_pilon to pilon.fasta [pilon] Writing NODE_4776_length_637_cov_7.153101:1-637 changes to pilon.changes [pilon] Writing updated NODE_4776_length_637_cov_7.153101_pilon to pilon.fasta [pilon] Writing NODE_4777_length_637_cov_2.591085:1-637 changes to pilon.changes [pilon] Writing updated NODE_4777_length_637_cov_2.591085_pilon to pilon.fasta [pilon] Writing NODE_4778_length_637_cov_1.779070:1-637 changes to pilon.changes [pilon] Writing updated NODE_4778_length_637_cov_1.779070_pilon to pilon.fasta [pilon] Writing NODE_4779_length_637_cov_1.459302:1-637 changes to pilon.changes [pilon] Writing updated NODE_4779_length_637_cov_1.459302_pilon to pilon.fasta [pilon] Writing NODE_4780_length_637_cov_1.205426:1-637 changes to pilon.changes [pilon] Writing updated NODE_4780_length_637_cov_1.205426_pilon to pilon.fasta [pilon] Writing NODE_4781_length_637_cov_0.763566:1-637 changes to pilon.changes [pilon] Writing updated NODE_4781_length_637_cov_0.763566_pilon to pilon.fasta [pilon] Writing NODE_4782_length_636_cov_27.386408:1-636 changes to pilon.changes [pilon] Writing updated NODE_4782_length_636_cov_27.386408_pilon to pilon.fasta [pilon] Writing NODE_4783_length_636_cov_26.023301:1-636 changes to pilon.changes [pilon] Writing updated NODE_4783_length_636_cov_26.023301_pilon to pilon.fasta [pilon] Writing NODE_4784_length_636_cov_25.753398:1-636 changes to pilon.changes [pilon] Writing updated NODE_4784_length_636_cov_25.753398_pilon to pilon.fasta [pilon] Writing NODE_4785_length_636_cov_23.990291:1-636 changes to pilon.changes [pilon] Writing updated NODE_4785_length_636_cov_23.990291_pilon to pilon.fasta [pilon] Writing NODE_4786_length_636_cov_13.679612:1-636 changes to pilon.changes [pilon] Writing updated NODE_4786_length_636_cov_13.679612_pilon to pilon.fasta [pilon] Writing NODE_4787_length_636_cov_13.219417:1-636 changes to pilon.changes [pilon] Writing updated NODE_4787_length_636_cov_13.219417_pilon to pilon.fasta [pilon] Writing NODE_4788_length_636_cov_4.506796:1-636 changes to pilon.changes [pilon] Writing updated NODE_4788_length_636_cov_4.506796_pilon to pilon.fasta [pilon] Writing NODE_4789_length_636_cov_1.365049:1-636 changes to pilon.changes [pilon] Writing updated NODE_4789_length_636_cov_1.365049_pilon to pilon.fasta [pilon] Writing NODE_4790_length_636_cov_1.318447:1-636 changes to pilon.changes [pilon] Writing updated NODE_4790_length_636_cov_1.318447_pilon to pilon.fasta [pilon] Writing NODE_4791_length_636_cov_0.524272:1-636 changes to pilon.changes [pilon] Writing updated NODE_4791_length_636_cov_0.524272_pilon to pilon.fasta [pilon] Writing NODE_4792_length_635_cov_20.966926:1-635 changes to pilon.changes [pilon] Writing updated NODE_4792_length_635_cov_20.966926_pilon to pilon.fasta [pilon] Writing NODE_4793_length_635_cov_9.192607:1-635 changes to pilon.changes [pilon] Writing updated NODE_4793_length_635_cov_9.192607_pilon to pilon.fasta [pilon] Writing NODE_4794_length_635_cov_2.535019:1-635 changes to pilon.changes [pilon] Writing updated NODE_4794_length_635_cov_2.535019_pilon to pilon.fasta [pilon] Writing NODE_4795_length_635_cov_2.142023:1-635 changes to pilon.changes [pilon] Writing updated NODE_4795_length_635_cov_2.142023_pilon to pilon.fasta [pilon] Writing NODE_4796_length_635_cov_1.848249:1-635 changes to pilon.changes [pilon] Writing updated NODE_4796_length_635_cov_1.848249_pilon to pilon.fasta [pilon] Writing NODE_4797_length_635_cov_1.336576:1-635 changes to pilon.changes [pilon] Writing updated NODE_4797_length_635_cov_1.336576_pilon to pilon.fasta [pilon] Writing NODE_4798_length_635_cov_1.285992:1-635 changes to pilon.changes [pilon] Writing updated NODE_4798_length_635_cov_1.285992_pilon to pilon.fasta [pilon] Writing NODE_4799_length_635_cov_0.931907:1-635 changes to pilon.changes [pilon] Writing updated NODE_4799_length_635_cov_0.931907_pilon to pilon.fasta [pilon] Writing NODE_4800_length_634_cov_38.187135:1-634 changes to pilon.changes [pilon] Writing updated NODE_4800_length_634_cov_38.187135_pilon to pilon.fasta [pilon] Writing NODE_4801_length_634_cov_21.001949:1-634 changes to pilon.changes [pilon] Writing updated NODE_4801_length_634_cov_21.001949_pilon to pilon.fasta [pilon] Writing NODE_4802_length_634_cov_13.345029:1-634 changes to pilon.changes [pilon] Writing updated NODE_4802_length_634_cov_13.345029_pilon to pilon.fasta [pilon] Writing NODE_4803_length_634_cov_10.773879:1-634 changes to pilon.changes [pilon] Writing updated NODE_4803_length_634_cov_10.773879_pilon to pilon.fasta [pilon] Writing NODE_4804_length_634_cov_10.543860:1-634 changes to pilon.changes [pilon] Writing updated NODE_4804_length_634_cov_10.543860_pilon to pilon.fasta [pilon] Writing NODE_4805_length_634_cov_10.046784:1-634 changes to pilon.changes [pilon] Writing updated NODE_4805_length_634_cov_10.046784_pilon to pilon.fasta [pilon] Writing NODE_4806_length_634_cov_8.056530:1-634 changes to pilon.changes [pilon] Writing updated NODE_4806_length_634_cov_8.056530_pilon to pilon.fasta [pilon] Writing NODE_4807_length_634_cov_2.270955:1-634 changes to pilon.changes [pilon] Writing updated NODE_4807_length_634_cov_2.270955_pilon to pilon.fasta [pilon] Writing NODE_4808_length_634_cov_2.255361:1-634 changes to pilon.changes [pilon] Writing updated NODE_4808_length_634_cov_2.255361_pilon to pilon.fasta [pilon] Writing NODE_4809_length_634_cov_1.754386:1-634 changes to pilon.changes [pilon] Writing updated NODE_4809_length_634_cov_1.754386_pilon to pilon.fasta [pilon] Writing NODE_4810_length_634_cov_0.923977:1-634 changes to pilon.changes [pilon] Writing updated NODE_4810_length_634_cov_0.923977_pilon to pilon.fasta [pilon] Writing NODE_4811_length_633_cov_49.259766:1-633 changes to pilon.changes [pilon] Writing updated NODE_4811_length_633_cov_49.259766_pilon to pilon.fasta [pilon] Writing NODE_4812_length_633_cov_39.015625:1-633 changes to pilon.changes [pilon] Writing updated NODE_4812_length_633_cov_39.015625_pilon to pilon.fasta [pilon] Writing NODE_4813_length_633_cov_25.882812:1-633 changes to pilon.changes [pilon] Writing updated NODE_4813_length_633_cov_25.882812_pilon to pilon.fasta [pilon] Writing NODE_4814_length_633_cov_24.183594:1-633 changes to pilon.changes [pilon] Writing updated NODE_4814_length_633_cov_24.183594_pilon to pilon.fasta [pilon] Writing NODE_4815_length_633_cov_22.957031:1-633 changes to pilon.changes [pilon] Writing updated NODE_4815_length_633_cov_22.957031_pilon to pilon.fasta [pilon] Writing NODE_4816_length_633_cov_22.603516:1-633 changes to pilon.changes [pilon] Writing updated NODE_4816_length_633_cov_22.603516_pilon to pilon.fasta [pilon] Writing NODE_4817_length_633_cov_18.667969:1-633 changes to pilon.changes [pilon] Writing updated NODE_4817_length_633_cov_18.667969_pilon to pilon.fasta [pilon] Writing NODE_4818_length_633_cov_11.464844:1-633 changes to pilon.changes [pilon] Writing updated NODE_4818_length_633_cov_11.464844_pilon to pilon.fasta [pilon] Writing NODE_4819_length_633_cov_2.884766:1-633 changes to pilon.changes [pilon] Writing updated NODE_4819_length_633_cov_2.884766_pilon to pilon.fasta [pilon] Writing NODE_4820_length_633_cov_2.701172:1-633 changes to pilon.changes [pilon] Writing updated NODE_4820_length_633_cov_2.701172_pilon to pilon.fasta [pilon] Writing NODE_4821_length_633_cov_1.744141:1-633 changes to pilon.changes [pilon] Writing updated NODE_4821_length_633_cov_1.744141_pilon to pilon.fasta [pilon] Writing NODE_4822_length_633_cov_1.351562:1-633 changes to pilon.changes [pilon] Writing updated NODE_4822_length_633_cov_1.351562_pilon to pilon.fasta [pilon] Writing NODE_4823_length_633_cov_0.699219:1-633 changes to pilon.changes [pilon] Writing updated NODE_4823_length_633_cov_0.699219_pilon to pilon.fasta [pilon] Writing NODE_4824_length_632_cov_55.330724:1-632 changes to pilon.changes [pilon] Writing updated NODE_4824_length_632_cov_55.330724_pilon to pilon.fasta [pilon] Writing NODE_4825_length_632_cov_24.270059:1-632 changes to pilon.changes [pilon] Writing updated NODE_4825_length_632_cov_24.270059_pilon to pilon.fasta [pilon] Writing NODE_4826_length_632_cov_20.690802:1-632 changes to pilon.changes [pilon] Writing updated NODE_4826_length_632_cov_20.690802_pilon to pilon.fasta [pilon] Writing NODE_4827_length_632_cov_11.704501:1-632 changes to pilon.changes [pilon] Writing updated NODE_4827_length_632_cov_11.704501_pilon to pilon.fasta [pilon] Writing NODE_4828_length_632_cov_10.684932:1-632 changes to pilon.changes [pilon] Writing updated NODE_4828_length_632_cov_10.684932_pilon to pilon.fasta [pilon] Writing NODE_4829_length_632_cov_7.109589:1-632 changes to pilon.changes [pilon] Writing updated NODE_4829_length_632_cov_7.109589_pilon to pilon.fasta [pilon] Writing NODE_4830_length_632_cov_6.943249:1-632 changes to pilon.changes [pilon] Writing updated NODE_4830_length_632_cov_6.943249_pilon to pilon.fasta [pilon] Writing NODE_4831_length_632_cov_3.301370:1-632 changes to pilon.changes [pilon] Writing updated NODE_4831_length_632_cov_3.301370_pilon to pilon.fasta [pilon] Writing NODE_4832_length_632_cov_3.074364:1-632 changes to pilon.changes [pilon] Writing updated NODE_4832_length_632_cov_3.074364_pilon to pilon.fasta [pilon] Writing NODE_4833_length_632_cov_2.430528:1-632 changes to pilon.changes [pilon] Writing updated NODE_4833_length_632_cov_2.430528_pilon to pilon.fasta [pilon] Writing NODE_4834_length_632_cov_2.066536:1-632 changes to pilon.changes [pilon] Writing updated NODE_4834_length_632_cov_2.066536_pilon to pilon.fasta [pilon] Writing NODE_4835_length_632_cov_1.874755:1-632 changes to pilon.changes [pilon] Writing updated NODE_4835_length_632_cov_1.874755_pilon to pilon.fasta [pilon] Writing NODE_4836_length_632_cov_1.168297:1-632 changes to pilon.changes [pilon] Writing updated NODE_4836_length_632_cov_1.168297_pilon to pilon.fasta [pilon] Writing NODE_4837_length_632_cov_0.929550:1-632 changes to pilon.changes [pilon] Writing updated NODE_4837_length_632_cov_0.929550_pilon to pilon.fasta [pilon] Writing NODE_4838_length_631_cov_31.092157:1-631 changes to pilon.changes [pilon] Writing updated NODE_4838_length_631_cov_31.092157_pilon to pilon.fasta [pilon] Writing NODE_4839_length_631_cov_29.374510:1-631 changes to pilon.changes [pilon] Writing updated NODE_4839_length_631_cov_29.374510_pilon to pilon.fasta [pilon] Writing NODE_4840_length_631_cov_29.123529:1-631 changes to pilon.changes [pilon] Writing updated NODE_4840_length_631_cov_29.123529_pilon to pilon.fasta [pilon] Writing NODE_4841_length_631_cov_27.494118:1-631 changes to pilon.changes [pilon] Writing updated NODE_4841_length_631_cov_27.494118_pilon to pilon.fasta [pilon] Writing NODE_4842_length_631_cov_20.645098:1-631 changes to pilon.changes [pilon] Writing updated NODE_4842_length_631_cov_20.645098_pilon to pilon.fasta [pilon] Writing NODE_4843_length_631_cov_18.770588:1-631 changes to pilon.changes [pilon] Writing updated NODE_4843_length_631_cov_18.770588_pilon to pilon.fasta [pilon] Writing NODE_4844_length_631_cov_13.617647:1-631 changes to pilon.changes [pilon] Writing updated NODE_4844_length_631_cov_13.617647_pilon to pilon.fasta [pilon] Writing NODE_4845_length_631_cov_4.127451:1-631 changes to pilon.changes [pilon] Writing updated NODE_4845_length_631_cov_4.127451_pilon to pilon.fasta [pilon] Writing NODE_4846_length_631_cov_3.401961:1-631 changes to pilon.changes [pilon] Writing updated NODE_4846_length_631_cov_3.401961_pilon to pilon.fasta [pilon] Writing NODE_4847_length_631_cov_3.109804:1-631 changes to pilon.changes [pilon] Writing updated NODE_4847_length_631_cov_3.109804_pilon to pilon.fasta [pilon] Writing NODE_4848_length_631_cov_2.096078:1-631 changes to pilon.changes [pilon] Writing updated NODE_4848_length_631_cov_2.096078_pilon to pilon.fasta [pilon] Writing NODE_4849_length_631_cov_1.737255:1-631 changes to pilon.changes [pilon] Writing updated NODE_4849_length_631_cov_1.737255_pilon to pilon.fasta [pilon] Writing NODE_4850_length_631_cov_1.733333:1-631 changes to pilon.changes [pilon] Writing updated NODE_4850_length_631_cov_1.733333_pilon to pilon.fasta [pilon] Writing NODE_4851_length_631_cov_1.550980:1-631 changes to pilon.changes [pilon] Writing updated NODE_4851_length_631_cov_1.550980_pilon to pilon.fasta [pilon] Writing NODE_4852_length_631_cov_0.476471:1-631 changes to pilon.changes [pilon] Writing updated NODE_4852_length_631_cov_0.476471_pilon to pilon.fasta [pilon] Writing NODE_4853_length_630_cov_48.267191:1-630 changes to pilon.changes [pilon] Writing updated NODE_4853_length_630_cov_48.267191_pilon to pilon.fasta [pilon] Writing NODE_4854_length_630_cov_16.917485:1-630 changes to pilon.changes [pilon] Writing updated NODE_4854_length_630_cov_16.917485_pilon to pilon.fasta [pilon] Writing NODE_4855_length_630_cov_16.491159:1-630 changes to pilon.changes [pilon] Writing updated NODE_4855_length_630_cov_16.491159_pilon to pilon.fasta [pilon] Writing NODE_4856_length_630_cov_14.190570:1-630 changes to pilon.changes [pilon] Writing updated NODE_4856_length_630_cov_14.190570_pilon to pilon.fasta [pilon] Writing NODE_4857_length_630_cov_11.787819:1-630 changes to pilon.changes [pilon] Writing updated NODE_4857_length_630_cov_11.787819_pilon to pilon.fasta [pilon] Writing NODE_4858_length_630_cov_4.815324:1-630 changes to pilon.changes [pilon] Writing updated NODE_4858_length_630_cov_4.815324_pilon to pilon.fasta [pilon] Writing NODE_4859_length_630_cov_2.090373:1-630 changes to pilon.changes [pilon] Writing updated NODE_4859_length_630_cov_2.090373_pilon to pilon.fasta [pilon] Writing NODE_4860_length_630_cov_0.980354:1-630 changes to pilon.changes [pilon] Writing updated NODE_4860_length_630_cov_0.980354_pilon to pilon.fasta [pilon] Writing NODE_4861_length_629_cov_38.149606:1-629 changes to pilon.changes [pilon] Writing updated NODE_4861_length_629_cov_38.149606_pilon to pilon.fasta [pilon] Writing NODE_4862_length_629_cov_35.612205:1-629 changes to pilon.changes [pilon] Writing updated NODE_4862_length_629_cov_35.612205_pilon to pilon.fasta [pilon] Writing NODE_4863_length_629_cov_35.531496:1-629 changes to pilon.changes [pilon] Writing updated NODE_4863_length_629_cov_35.531496_pilon to pilon.fasta [pilon] Writing NODE_4864_length_629_cov_27.960630:1-629 changes to pilon.changes [pilon] Writing updated NODE_4864_length_629_cov_27.960630_pilon to pilon.fasta [pilon] Writing NODE_4865_length_629_cov_27.177165:1-629 changes to pilon.changes [pilon] Writing updated NODE_4865_length_629_cov_27.177165_pilon to pilon.fasta [pilon] Writing NODE_4866_length_629_cov_23.694882:1-629 changes to pilon.changes [pilon] Writing updated NODE_4866_length_629_cov_23.694882_pilon to pilon.fasta [pilon] Writing NODE_4867_length_629_cov_22.622047:1-629 changes to pilon.changes [pilon] Writing updated NODE_4867_length_629_cov_22.622047_pilon to pilon.fasta [pilon] Writing NODE_4868_length_629_cov_19.228346:1-629 changes to pilon.changes [pilon] Writing updated NODE_4868_length_629_cov_19.228346_pilon to pilon.fasta [pilon] Writing NODE_4869_length_629_cov_17.933071:1-629 changes to pilon.changes [pilon] Writing updated NODE_4869_length_629_cov_17.933071_pilon to pilon.fasta [pilon] Writing NODE_4870_length_629_cov_17.828740:1-629 changes to pilon.changes [pilon] Writing updated NODE_4870_length_629_cov_17.828740_pilon to pilon.fasta [pilon] Writing NODE_4871_length_629_cov_13.350394:1-629 changes to pilon.changes [pilon] Writing updated NODE_4871_length_629_cov_13.350394_pilon to pilon.fasta [pilon] Writing NODE_4872_length_629_cov_10.655512:1-629 changes to pilon.changes [pilon] Writing updated NODE_4872_length_629_cov_10.655512_pilon to pilon.fasta [pilon] Writing NODE_4873_length_629_cov_10.240157:1-629 changes to pilon.changes [pilon] Writing updated NODE_4873_length_629_cov_10.240157_pilon to pilon.fasta [pilon] Writing NODE_4874_length_629_cov_3.001969:1-629 changes to pilon.changes [pilon] Writing updated NODE_4874_length_629_cov_3.001969_pilon to pilon.fasta [pilon] Writing NODE_4875_length_629_cov_2.035433:1-629 changes to pilon.changes [pilon] Writing updated NODE_4875_length_629_cov_2.035433_pilon to pilon.fasta [pilon] Writing NODE_4876_length_629_cov_1.419291:1-629 changes to pilon.changes [pilon] Writing updated NODE_4876_length_629_cov_1.419291_pilon to pilon.fasta [pilon] Writing NODE_4877_length_629_cov_1.344488:1-629 changes to pilon.changes [pilon] Writing updated NODE_4877_length_629_cov_1.344488_pilon to pilon.fasta [pilon] Writing NODE_4878_length_629_cov_0.566929:1-629 changes to pilon.changes [pilon] Writing updated NODE_4878_length_629_cov_0.566929_pilon to pilon.fasta [pilon] Writing NODE_4879_length_628_cov_45.218935:1-628 changes to pilon.changes [pilon] Writing updated NODE_4879_length_628_cov_45.218935_pilon to pilon.fasta [pilon] Writing NODE_4880_length_628_cov_22.767258:1-628 changes to pilon.changes [pilon] Writing updated NODE_4880_length_628_cov_22.767258_pilon to pilon.fasta [pilon] Writing NODE_4881_length_628_cov_14.153846:1-628 changes to pilon.changes [pilon] Writing updated NODE_4881_length_628_cov_14.153846_pilon to pilon.fasta [pilon] Writing NODE_4882_length_628_cov_10.126233:1-628 changes to pilon.changes [pilon] Writing updated NODE_4882_length_628_cov_10.126233_pilon to pilon.fasta [pilon] Writing NODE_4883_length_628_cov_5.151874:1-628 changes to pilon.changes [pilon] Writing updated NODE_4883_length_628_cov_5.151874_pilon to pilon.fasta [pilon] Writing NODE_4884_length_628_cov_4.412229:1-628 changes to pilon.changes [pilon] Writing updated NODE_4884_length_628_cov_4.412229_pilon to pilon.fasta [pilon] Writing NODE_4885_length_628_cov_2.232742:1-628 changes to pilon.changes [pilon] Writing updated NODE_4885_length_628_cov_2.232742_pilon to pilon.fasta [pilon] Writing NODE_4886_length_628_cov_1.366864:1-628 changes to pilon.changes [pilon] Writing updated NODE_4886_length_628_cov_1.366864_pilon to pilon.fasta [pilon] Writing NODE_4887_length_627_cov_39.110672:1-627 changes to pilon.changes [pilon] Writing updated NODE_4887_length_627_cov_39.110672_pilon to pilon.fasta [pilon] Writing NODE_4888_length_627_cov_27.545455:1-627 changes to pilon.changes [pilon] Writing updated NODE_4888_length_627_cov_27.545455_pilon to pilon.fasta [pilon] Writing NODE_4889_length_627_cov_20.029644:1-627 changes to pilon.changes [pilon] Writing updated NODE_4889_length_627_cov_20.029644_pilon to pilon.fasta [pilon] Writing NODE_4890_length_627_cov_17.612648:1-627 changes to pilon.changes [pilon] Writing updated NODE_4890_length_627_cov_17.612648_pilon to pilon.fasta [pilon] Writing NODE_4891_length_627_cov_13.193676:1-627 changes to pilon.changes [pilon] Writing updated NODE_4891_length_627_cov_13.193676_pilon to pilon.fasta [pilon] Writing NODE_4892_length_627_cov_12.448617:1-627 changes to pilon.changes [pilon] Writing updated NODE_4892_length_627_cov_12.448617_pilon to pilon.fasta [pilon] Writing NODE_4893_length_627_cov_7.156126:1-627 changes to pilon.changes [pilon] Writing updated NODE_4893_length_627_cov_7.156126_pilon to pilon.fasta [pilon] Writing NODE_4894_length_627_cov_2.861660:1-627 changes to pilon.changes [pilon] Writing updated NODE_4894_length_627_cov_2.861660_pilon to pilon.fasta [pilon] Writing NODE_4895_length_627_cov_1.735178:1-627 changes to pilon.changes [pilon] Writing updated NODE_4895_length_627_cov_1.735178_pilon to pilon.fasta [pilon] Writing NODE_4896_length_627_cov_1.415020:1-627 changes to pilon.changes [pilon] Writing updated NODE_4896_length_627_cov_1.415020_pilon to pilon.fasta [pilon] Writing NODE_4897_length_626_cov_30.566337:1-626 changes to pilon.changes [pilon] Writing updated NODE_4897_length_626_cov_30.566337_pilon to pilon.fasta [pilon] Writing NODE_4898_length_626_cov_27.522772:1-626 changes to pilon.changes [pilon] Writing updated NODE_4898_length_626_cov_27.522772_pilon to pilon.fasta [pilon] Writing NODE_4899_length_626_cov_26.091089:1-626 changes to pilon.changes [pilon] Writing updated NODE_4899_length_626_cov_26.091089_pilon to pilon.fasta [pilon] Writing NODE_4900_length_626_cov_20.439604:1-626 changes to pilon.changes [pilon] Writing updated NODE_4900_length_626_cov_20.439604_pilon to pilon.fasta [pilon] Writing NODE_4901_length_626_cov_16.287129:1-626 changes to pilon.changes [pilon] Writing updated NODE_4901_length_626_cov_16.287129_pilon to pilon.fasta [pilon] Writing NODE_4902_length_626_cov_14.384158:1-626 changes to pilon.changes [pilon] Writing updated NODE_4902_length_626_cov_14.384158_pilon to pilon.fasta [pilon] Writing NODE_4903_length_626_cov_9.605941:1-626 changes to pilon.changes [pilon] Writing updated NODE_4903_length_626_cov_9.605941_pilon to pilon.fasta [pilon] Writing NODE_4904_length_626_cov_8.936634:1-626 changes to pilon.changes [pilon] Writing updated NODE_4904_length_626_cov_8.936634_pilon to pilon.fasta [pilon] Writing NODE_4905_length_626_cov_3.708911:1-626 changes to pilon.changes [pilon] Writing updated NODE_4905_length_626_cov_3.708911_pilon to pilon.fasta [pilon] Writing NODE_4906_length_626_cov_1.817822:1-626 changes to pilon.changes [pilon] Writing updated NODE_4906_length_626_cov_1.817822_pilon to pilon.fasta [pilon] Writing NODE_4907_length_626_cov_0.904950:1-626 changes to pilon.changes [pilon] Writing updated NODE_4907_length_626_cov_0.904950_pilon to pilon.fasta [pilon] Writing NODE_4908_length_625_cov_37.736111:1-625 changes to pilon.changes [pilon] Writing updated NODE_4908_length_625_cov_37.736111_pilon to pilon.fasta [pilon] Writing NODE_4909_length_625_cov_21.380952:1-625 changes to pilon.changes [pilon] Writing updated NODE_4909_length_625_cov_21.380952_pilon to pilon.fasta [pilon] Writing NODE_4910_length_625_cov_17.503968:1-625 changes to pilon.changes [pilon] Writing updated NODE_4910_length_625_cov_17.503968_pilon to pilon.fasta [pilon] Writing NODE_4911_length_625_cov_15.674603:1-625 changes to pilon.changes [pilon] Writing updated NODE_4911_length_625_cov_15.674603_pilon to pilon.fasta [pilon] Writing NODE_4912_length_625_cov_4.073413:1-625 changes to pilon.changes [pilon] Writing updated NODE_4912_length_625_cov_4.073413_pilon to pilon.fasta [pilon] Writing NODE_4913_length_625_cov_2.345238:1-625 changes to pilon.changes [pilon] Writing updated NODE_4913_length_625_cov_2.345238_pilon to pilon.fasta [pilon] Writing NODE_4914_length_625_cov_1.638889:1-625 changes to pilon.changes [pilon] Writing updated NODE_4914_length_625_cov_1.638889_pilon to pilon.fasta [pilon] Writing NODE_4915_length_625_cov_1.440476:1-625 changes to pilon.changes [pilon] Writing updated NODE_4915_length_625_cov_1.440476_pilon to pilon.fasta [pilon] Writing NODE_4916_length_625_cov_1.418651:1-625 changes to pilon.changes [pilon] Writing updated NODE_4916_length_625_cov_1.418651_pilon to pilon.fasta [pilon] Writing NODE_4917_length_625_cov_1.307540:1-625 changes to pilon.changes [pilon] Writing updated NODE_4917_length_625_cov_1.307540_pilon to pilon.fasta [pilon] Writing NODE_4918_length_625_cov_1.184524:1-625 changes to pilon.changes [pilon] Writing updated NODE_4918_length_625_cov_1.184524_pilon to pilon.fasta [pilon] Writing NODE_4919_length_624_cov_43.938370:1-624 changes to pilon.changes [pilon] Writing updated NODE_4919_length_624_cov_43.938370_pilon to pilon.fasta [pilon] Writing NODE_4920_length_624_cov_40.763419:1-624 changes to pilon.changes [pilon] Writing updated NODE_4920_length_624_cov_40.763419_pilon to pilon.fasta [pilon] Writing NODE_4921_length_624_cov_24.918489:1-624 changes to pilon.changes [pilon] Writing updated NODE_4921_length_624_cov_24.918489_pilon to pilon.fasta [pilon] Writing NODE_4922_length_624_cov_24.343936:1-624 changes to pilon.changes [pilon] Writing updated NODE_4922_length_624_cov_24.343936_pilon to pilon.fasta [pilon] Writing NODE_4923_length_624_cov_19.073559:1-624 changes to pilon.changes [pilon] Writing updated NODE_4923_length_624_cov_19.073559_pilon to pilon.fasta [pilon] Writing NODE_4924_length_624_cov_14.230616:1-624 changes to pilon.changes [pilon] Writing updated NODE_4924_length_624_cov_14.230616_pilon to pilon.fasta [pilon] Writing NODE_4925_length_624_cov_14.003976:1-624 changes to pilon.changes [pilon] Writing updated NODE_4925_length_624_cov_14.003976_pilon to pilon.fasta [pilon] Writing NODE_4926_length_624_cov_12.642147:1-624 changes to pilon.changes [pilon] Writing updated NODE_4926_length_624_cov_12.642147_pilon to pilon.fasta [pilon] Writing NODE_4927_length_624_cov_5.051690:1-624 changes to pilon.changes [pilon] Writing updated NODE_4927_length_624_cov_5.051690_pilon to pilon.fasta [pilon] Writing NODE_4928_length_624_cov_4.019881:1-624 changes to pilon.changes [pilon] Writing updated NODE_4928_length_624_cov_4.019881_pilon to pilon.fasta [pilon] Writing NODE_4929_length_624_cov_2.646123:1-624 changes to pilon.changes [pilon] Writing updated NODE_4929_length_624_cov_2.646123_pilon to pilon.fasta [pilon] Writing NODE_4930_length_624_cov_2.516899:1-624 changes to pilon.changes [pilon] Writing updated NODE_4930_length_624_cov_2.516899_pilon to pilon.fasta [pilon] Writing NODE_4931_length_624_cov_2.019881:1-624 changes to pilon.changes [pilon] Writing updated NODE_4931_length_624_cov_2.019881_pilon to pilon.fasta [pilon] Writing NODE_4932_length_624_cov_1.622266:1-624 changes to pilon.changes [pilon] Writing updated NODE_4932_length_624_cov_1.622266_pilon to pilon.fasta [pilon] Writing NODE_4933_length_624_cov_1.564612:1-624 changes to pilon.changes [pilon] Writing updated NODE_4933_length_624_cov_1.564612_pilon to pilon.fasta [pilon] Writing NODE_4934_length_624_cov_0.836978:1-624 changes to pilon.changes [pilon] Writing updated NODE_4934_length_624_cov_0.836978_pilon to pilon.fasta [pilon] Writing NODE_4935_length_623_cov_10.725100:1-623 changes to pilon.changes [pilon] Writing updated NODE_4935_length_623_cov_10.725100_pilon to pilon.fasta [pilon] Writing NODE_4936_length_623_cov_6.894422:1-623 changes to pilon.changes [pilon] Writing updated NODE_4936_length_623_cov_6.894422_pilon to pilon.fasta [pilon] Writing NODE_4937_length_623_cov_5.205179:1-623 changes to pilon.changes [pilon] Writing updated NODE_4937_length_623_cov_5.205179_pilon to pilon.fasta [pilon] Writing NODE_4938_length_623_cov_4.284861:1-623 changes to pilon.changes [pilon] Writing updated NODE_4938_length_623_cov_4.284861_pilon to pilon.fasta [pilon] Writing NODE_4939_length_623_cov_3.956175:1-623 changes to pilon.changes [pilon] Writing updated NODE_4939_length_623_cov_3.956175_pilon to pilon.fasta [pilon] Writing NODE_4940_length_623_cov_2.687251:1-623 changes to pilon.changes [pilon] Writing updated NODE_4940_length_623_cov_2.687251_pilon to pilon.fasta [pilon] Writing NODE_4941_length_623_cov_1.474104:1-623 changes to pilon.changes [pilon] Writing updated NODE_4941_length_623_cov_1.474104_pilon to pilon.fasta [pilon] Writing NODE_4942_length_623_cov_1.424303:1-623 changes to pilon.changes [pilon] Writing updated NODE_4942_length_623_cov_1.424303_pilon to pilon.fasta [pilon] Writing NODE_4943_length_623_cov_1.404382:1-623 changes to pilon.changes [pilon] Writing updated NODE_4943_length_623_cov_1.404382_pilon to pilon.fasta [pilon] Writing NODE_4944_length_623_cov_0.950199:1-623 changes to pilon.changes [pilon] Writing updated NODE_4944_length_623_cov_0.950199_pilon to pilon.fasta [pilon] Writing NODE_4945_length_623_cov_0.870518:1-623 changes to pilon.changes [pilon] Writing updated NODE_4945_length_623_cov_0.870518_pilon to pilon.fasta [pilon] Writing NODE_4946_length_623_cov_0.816733:1-623 changes to pilon.changes [pilon] Writing updated NODE_4946_length_623_cov_0.816733_pilon to pilon.fasta [pilon] Writing NODE_4947_length_623_cov_0.715139:1-623 changes to pilon.changes [pilon] Writing updated NODE_4947_length_623_cov_0.715139_pilon to pilon.fasta [pilon] Writing NODE_4948_length_623_cov_0.621514:1-623 changes to pilon.changes [pilon] Writing updated NODE_4948_length_623_cov_0.621514_pilon to pilon.fasta [pilon] Writing NODE_4949_length_622_cov_57.980040:1-622 changes to pilon.changes [pilon] Writing updated NODE_4949_length_622_cov_57.980040_pilon to pilon.fasta [pilon] Writing NODE_4950_length_622_cov_42.676647:1-622 changes to pilon.changes [pilon] Writing updated NODE_4950_length_622_cov_42.676647_pilon to pilon.fasta [pilon] Writing NODE_4951_length_622_cov_19.431138:1-622 changes to pilon.changes [pilon] Writing updated NODE_4951_length_622_cov_19.431138_pilon to pilon.fasta [pilon] Writing NODE_4952_length_622_cov_14.628743:1-622 changes to pilon.changes [pilon] Writing updated NODE_4952_length_622_cov_14.628743_pilon to pilon.fasta [pilon] Writing NODE_4953_length_622_cov_8.740519:1-622 changes to pilon.changes [pilon] Writing updated NODE_4953_length_622_cov_8.740519_pilon to pilon.fasta [pilon] Writing NODE_4954_length_622_cov_4.790419:1-622 changes to pilon.changes [pilon] Writing updated NODE_4954_length_622_cov_4.790419_pilon to pilon.fasta [pilon] Writing NODE_4955_length_622_cov_3.560878:1-622 changes to pilon.changes [pilon] Writing updated NODE_4955_length_622_cov_3.560878_pilon to pilon.fasta [pilon] Writing NODE_4956_length_622_cov_3.289421:1-622 changes to pilon.changes [pilon] Writing updated NODE_4956_length_622_cov_3.289421_pilon to pilon.fasta [pilon] Writing NODE_4957_length_622_cov_2.471058:1-622 changes to pilon.changes [pilon] Writing updated NODE_4957_length_622_cov_2.471058_pilon to pilon.fasta [pilon] Writing NODE_4958_length_622_cov_2.055888:1-622 changes to pilon.changes [pilon] Writing updated NODE_4958_length_622_cov_2.055888_pilon to pilon.fasta [pilon] Writing NODE_4959_length_622_cov_1.055888:1-622 changes to pilon.changes [pilon] Writing updated NODE_4959_length_622_cov_1.055888_pilon to pilon.fasta [pilon] Writing NODE_4960_length_621_cov_70.520000:1-621 changes to pilon.changes [pilon] Writing updated NODE_4960_length_621_cov_70.520000_pilon to pilon.fasta [pilon] Writing NODE_4961_length_621_cov_38.668000:1-621 changes to pilon.changes [pilon] Writing updated NODE_4961_length_621_cov_38.668000_pilon to pilon.fasta [pilon] Writing NODE_4962_length_621_cov_34.146000:1-621 changes to pilon.changes [pilon] Writing updated NODE_4962_length_621_cov_34.146000_pilon to pilon.fasta [pilon] Writing NODE_4963_length_621_cov_26.044000:1-621 changes to pilon.changes [pilon] Writing updated NODE_4963_length_621_cov_26.044000_pilon to pilon.fasta [pilon] Writing NODE_4964_length_621_cov_20.048000:1-621 changes to pilon.changes [pilon] Writing updated NODE_4964_length_621_cov_20.048000_pilon to pilon.fasta [pilon] Writing NODE_4965_length_621_cov_19.124000:1-621 changes to pilon.changes [pilon] Writing updated NODE_4965_length_621_cov_19.124000_pilon to pilon.fasta [pilon] Writing NODE_4966_length_621_cov_16.576000:1-621 changes to pilon.changes [pilon] Writing updated NODE_4966_length_621_cov_16.576000_pilon to pilon.fasta [pilon] Writing NODE_4967_length_621_cov_14.808000:1-621 changes to pilon.changes [pilon] Writing updated NODE_4967_length_621_cov_14.808000_pilon to pilon.fasta [pilon] Writing NODE_4968_length_621_cov_12.066000:1-621 changes to pilon.changes [pilon] Writing updated NODE_4968_length_621_cov_12.066000_pilon to pilon.fasta [pilon] Writing NODE_4969_length_621_cov_2.202000:1-621 changes to pilon.changes [pilon] Writing updated NODE_4969_length_621_cov_2.202000_pilon to pilon.fasta [pilon] Writing NODE_4970_length_621_cov_1.320000:1-621 changes to pilon.changes [pilon] Writing updated NODE_4970_length_621_cov_1.320000_pilon to pilon.fasta [pilon] Writing NODE_4971_length_620_cov_33.853707:1-620 changes to pilon.changes [pilon] Writing updated NODE_4971_length_620_cov_33.853707_pilon to pilon.fasta [pilon] Writing NODE_4972_length_620_cov_31.008016:1-620 changes to pilon.changes [pilon] Writing updated NODE_4972_length_620_cov_31.008016_pilon to pilon.fasta [pilon] Writing NODE_4973_length_620_cov_23.006012:1-620 changes to pilon.changes [pilon] Writing updated NODE_4973_length_620_cov_23.006012_pilon to pilon.fasta [pilon] Writing NODE_4974_length_620_cov_21.492986:1-620 changes to pilon.changes [pilon] Writing updated NODE_4974_length_620_cov_21.492986_pilon to pilon.fasta [pilon] Writing NODE_4975_length_620_cov_21.360721:1-620 changes to pilon.changes [pilon] Writing updated NODE_4975_length_620_cov_21.360721_pilon to pilon.fasta [pilon] Writing NODE_4976_length_620_cov_16.693387:1-620 changes to pilon.changes [pilon] Writing updated NODE_4976_length_620_cov_16.693387_pilon to pilon.fasta [pilon] Writing NODE_4977_length_620_cov_14.294589:1-620 changes to pilon.changes [pilon] Writing updated NODE_4977_length_620_cov_14.294589_pilon to pilon.fasta [pilon] Writing NODE_4978_length_620_cov_10.687375:1-620 changes to pilon.changes [pilon] Writing updated NODE_4978_length_620_cov_10.687375_pilon to pilon.fasta [pilon] Writing NODE_4979_length_620_cov_4.402806:1-620 changes to pilon.changes [pilon] Writing updated NODE_4979_length_620_cov_4.402806_pilon to pilon.fasta [pilon] Writing NODE_4980_length_620_cov_4.258517:1-620 changes to pilon.changes [pilon] Writing updated NODE_4980_length_620_cov_4.258517_pilon to pilon.fasta [pilon] Writing NODE_4981_length_620_cov_2.655311:1-620 changes to pilon.changes [pilon] Writing updated NODE_4981_length_620_cov_2.655311_pilon to pilon.fasta [pilon] Writing NODE_4982_length_620_cov_2.621242:1-620 changes to pilon.changes [pilon] Writing updated NODE_4982_length_620_cov_2.621242_pilon to pilon.fasta [pilon] Writing NODE_4983_length_620_cov_2.204409:1-620 changes to pilon.changes [pilon] Writing updated NODE_4983_length_620_cov_2.204409_pilon to pilon.fasta [pilon] Writing NODE_4984_length_620_cov_0.691383:1-620 changes to pilon.changes [pilon] Writing updated NODE_4984_length_620_cov_0.691383_pilon to pilon.fasta [pilon] Writing NODE_4985_length_619_cov_28.584337:1-619 changes to pilon.changes [pilon] Writing updated NODE_4985_length_619_cov_28.584337_pilon to pilon.fasta [pilon] Writing NODE_4986_length_619_cov_24.140562:1-619 changes to pilon.changes [pilon] Writing updated NODE_4986_length_619_cov_24.140562_pilon to pilon.fasta [pilon] Writing NODE_4987_length_619_cov_23.359438:1-619 changes to pilon.changes [pilon] Writing updated NODE_4987_length_619_cov_23.359438_pilon to pilon.fasta [pilon] Writing NODE_4988_length_619_cov_21.070281:1-619 changes to pilon.changes [pilon] Writing updated NODE_4988_length_619_cov_21.070281_pilon to pilon.fasta [pilon] Writing NODE_4989_length_619_cov_20.146586:1-619 changes to pilon.changes [pilon] Writing updated NODE_4989_length_619_cov_20.146586_pilon to pilon.fasta [pilon] Writing NODE_4990_length_619_cov_18.574297:1-619 changes to pilon.changes [pilon] Writing updated NODE_4990_length_619_cov_18.574297_pilon to pilon.fasta [pilon] Writing NODE_4991_length_619_cov_10.977912:1-619 changes to pilon.changes [pilon] Writing updated NODE_4991_length_619_cov_10.977912_pilon to pilon.fasta [pilon] Writing NODE_4992_length_619_cov_5.688755:1-619 changes to pilon.changes [pilon] Writing updated NODE_4992_length_619_cov_5.688755_pilon to pilon.fasta [pilon] Writing NODE_4993_length_619_cov_1.951807:1-619 changes to pilon.changes [pilon] Writing updated NODE_4993_length_619_cov_1.951807_pilon to pilon.fasta [pilon] Writing NODE_4994_length_619_cov_1.757028:1-619 changes to pilon.changes [pilon] Writing updated NODE_4994_length_619_cov_1.757028_pilon to pilon.fasta [pilon] Writing NODE_4995_length_619_cov_1.409639:1-619 changes to pilon.changes [pilon] Writing updated NODE_4995_length_619_cov_1.409639_pilon to pilon.fasta [pilon] Writing NODE_4996_length_619_cov_0.987952:1-619 changes to pilon.changes [pilon] Writing updated NODE_4996_length_619_cov_0.987952_pilon to pilon.fasta [pilon] Writing NODE_4997_length_619_cov_0.863454:1-619 changes to pilon.changes [pilon] Writing updated NODE_4997_length_619_cov_0.863454_pilon to pilon.fasta [pilon] Writing NODE_4998_length_618_cov_31.756539:1-618 changes to pilon.changes [pilon] Writing updated NODE_4998_length_618_cov_31.756539_pilon to pilon.fasta [pilon] Writing NODE_4999_length_618_cov_26.855131:1-618 changes to pilon.changes [pilon] Writing updated NODE_4999_length_618_cov_26.855131_pilon to pilon.fasta [pilon] Writing NODE_5000_length_618_cov_25.561368:1-618 changes to pilon.changes [pilon] Writing updated NODE_5000_length_618_cov_25.561368_pilon to pilon.fasta [pilon] Writing NODE_5001_length_618_cov_20.154930:1-618 changes to pilon.changes [pilon] Writing updated NODE_5001_length_618_cov_20.154930_pilon to pilon.fasta [pilon] Writing NODE_5002_length_618_cov_20.092555:1-618 changes to pilon.changes [pilon] Writing updated NODE_5002_length_618_cov_20.092555_pilon to pilon.fasta [pilon] Writing NODE_5003_length_618_cov_17.762575:1-618 changes to pilon.changes [pilon] Writing updated NODE_5003_length_618_cov_17.762575_pilon to pilon.fasta [pilon] Writing NODE_5004_length_618_cov_4.048290:1-618 changes to pilon.changes [pilon] Writing updated NODE_5004_length_618_cov_4.048290_pilon to pilon.fasta [pilon] Writing NODE_5005_length_618_cov_3.545272:1-618 changes to pilon.changes [pilon] Writing updated NODE_5005_length_618_cov_3.545272_pilon to pilon.fasta [pilon] Writing NODE_5006_length_618_cov_2.893360:1-618 changes to pilon.changes [pilon] Writing updated NODE_5006_length_618_cov_2.893360_pilon to pilon.fasta [pilon] Writing NODE_5007_length_618_cov_2.050302:1-618 changes to pilon.changes [pilon] Writing updated NODE_5007_length_618_cov_2.050302_pilon to pilon.fasta [pilon] Writing NODE_5008_length_618_cov_1.050302:1-618 changes to pilon.changes [pilon] Writing updated NODE_5008_length_618_cov_1.050302_pilon to pilon.fasta [pilon] Writing NODE_5009_length_618_cov_0.668008:1-618 changes to pilon.changes [pilon] Writing updated NODE_5009_length_618_cov_0.668008_pilon to pilon.fasta [pilon] Writing NODE_5010_length_617_cov_74.947581:1-617 changes to pilon.changes [pilon] Writing updated NODE_5010_length_617_cov_74.947581_pilon to pilon.fasta [pilon] Writing NODE_5011_length_617_cov_58.171371:1-617 changes to pilon.changes [pilon] Writing updated NODE_5011_length_617_cov_58.171371_pilon to pilon.fasta [pilon] Writing NODE_5012_length_617_cov_44.258065:1-617 changes to pilon.changes [pilon] Writing updated NODE_5012_length_617_cov_44.258065_pilon to pilon.fasta [pilon] Writing NODE_5013_length_617_cov_33.808468:1-617 changes to pilon.changes [pilon] Writing updated NODE_5013_length_617_cov_33.808468_pilon to pilon.fasta [pilon] Writing NODE_5014_length_617_cov_30.342742:1-617 changes to pilon.changes [pilon] Writing updated NODE_5014_length_617_cov_30.342742_pilon to pilon.fasta [pilon] Writing NODE_5015_length_617_cov_27.143145:1-617 changes to pilon.changes [pilon] Writing updated NODE_5015_length_617_cov_27.143145_pilon to pilon.fasta [pilon] Writing NODE_5016_length_617_cov_24.084677:1-617 changes to pilon.changes [pilon] Writing updated NODE_5016_length_617_cov_24.084677_pilon to pilon.fasta [pilon] Writing NODE_5017_length_617_cov_17.334677:1-617 changes to pilon.changes [pilon] Writing updated NODE_5017_length_617_cov_17.334677_pilon to pilon.fasta [pilon] Writing NODE_5018_length_617_cov_16.701613:1-617 changes to pilon.changes [pilon] Writing updated NODE_5018_length_617_cov_16.701613_pilon to pilon.fasta [pilon] Writing NODE_5019_length_617_cov_15.489919:1-617 changes to pilon.changes [pilon] Writing updated NODE_5019_length_617_cov_15.489919_pilon to pilon.fasta [pilon] Writing NODE_5020_length_617_cov_8.812500:1-617 changes to pilon.changes [pilon] Writing updated NODE_5020_length_617_cov_8.812500_pilon to pilon.fasta [pilon] Writing NODE_5021_length_617_cov_5.800403:1-617 changes to pilon.changes [pilon] Writing updated NODE_5021_length_617_cov_5.800403_pilon to pilon.fasta [pilon] Writing NODE_5022_length_617_cov_4.832661:1-617 changes to pilon.changes [pilon] Writing updated NODE_5022_length_617_cov_4.832661_pilon to pilon.fasta [pilon] Writing NODE_5023_length_617_cov_4.578629:1-617 changes to pilon.changes [pilon] Writing updated NODE_5023_length_617_cov_4.578629_pilon to pilon.fasta [pilon] Writing NODE_5024_length_617_cov_4.375000:1-617 changes to pilon.changes [pilon] Writing updated NODE_5024_length_617_cov_4.375000_pilon to pilon.fasta [pilon] Writing NODE_5025_length_617_cov_3.556452:1-617 changes to pilon.changes [pilon] Writing updated NODE_5025_length_617_cov_3.556452_pilon to pilon.fasta [pilon] Writing NODE_5026_length_617_cov_2.610887:1-617 changes to pilon.changes [pilon] Writing updated NODE_5026_length_617_cov_2.610887_pilon to pilon.fasta [pilon] Writing NODE_5027_length_617_cov_2.586694:1-617 changes to pilon.changes [pilon] Writing updated NODE_5027_length_617_cov_2.586694_pilon to pilon.fasta [pilon] Writing NODE_5028_length_617_cov_2.074597:1-617 changes to pilon.changes [pilon] Writing updated NODE_5028_length_617_cov_2.074597_pilon to pilon.fasta [pilon] Writing NODE_5029_length_617_cov_2.066532:1-617 changes to pilon.changes [pilon] Writing updated NODE_5029_length_617_cov_2.066532_pilon to pilon.fasta [pilon] Writing NODE_5030_length_617_cov_0.562500:1-617 changes to pilon.changes [pilon] Writing updated NODE_5030_length_617_cov_0.562500_pilon to pilon.fasta [pilon] Writing NODE_5031_length_617_cov_0.467742:1-617 changes to pilon.changes [pilon] Writing updated NODE_5031_length_617_cov_0.467742_pilon to pilon.fasta [pilon] Writing NODE_5032_length_616_cov_55.258586:1-616 changes to pilon.changes [pilon] Writing updated NODE_5032_length_616_cov_55.258586_pilon to pilon.fasta [pilon] Writing NODE_5033_length_616_cov_28.886869:1-616 changes to pilon.changes [pilon] Writing updated NODE_5033_length_616_cov_28.886869_pilon to pilon.fasta [pilon] Writing NODE_5034_length_616_cov_27.242424:1-616 changes to pilon.changes [pilon] Writing updated NODE_5034_length_616_cov_27.242424_pilon to pilon.fasta [pilon] Writing NODE_5035_length_616_cov_19.121212:1-616 changes to pilon.changes [pilon] Writing updated NODE_5035_length_616_cov_19.121212_pilon to pilon.fasta [pilon] Writing NODE_5036_length_616_cov_15.692929:1-616 changes to pilon.changes [pilon] Writing updated NODE_5036_length_616_cov_15.692929_pilon to pilon.fasta [pilon] Writing NODE_5037_length_616_cov_7.688889:1-616 changes to pilon.changes [pilon] Writing updated NODE_5037_length_616_cov_7.688889_pilon to pilon.fasta [pilon] Writing NODE_5038_length_616_cov_4.155556:1-616 changes to pilon.changes [pilon] Writing updated NODE_5038_length_616_cov_4.155556_pilon to pilon.fasta [pilon] Writing NODE_5039_length_616_cov_3.820202:1-616 changes to pilon.changes [pilon] Writing updated NODE_5039_length_616_cov_3.820202_pilon to pilon.fasta [pilon] Writing NODE_5040_length_616_cov_2.187879:1-616 changes to pilon.changes [pilon] Writing updated NODE_5040_length_616_cov_2.187879_pilon to pilon.fasta [pilon] Writing NODE_5041_length_616_cov_0.755556:1-616 changes to pilon.changes [pilon] Writing updated NODE_5041_length_616_cov_0.755556_pilon to pilon.fasta [pilon] Writing NODE_5042_length_615_cov_24.036437:1-615 changes to pilon.changes [pilon] Writing updated NODE_5042_length_615_cov_24.036437_pilon to pilon.fasta [pilon] Writing NODE_5043_length_615_cov_22.912955:1-615 changes to pilon.changes [pilon] Writing updated NODE_5043_length_615_cov_22.912955_pilon to pilon.fasta [pilon] Writing NODE_5044_length_615_cov_12.159919:1-615 changes to pilon.changes [pilon] Writing updated NODE_5044_length_615_cov_12.159919_pilon to pilon.fasta [pilon] Writing NODE_5045_length_615_cov_8.524291:1-615 changes to pilon.changes [pilon] Writing updated NODE_5045_length_615_cov_8.524291_pilon to pilon.fasta [pilon] Writing NODE_5046_length_615_cov_7.463563:1-615 changes to pilon.changes [pilon] Writing updated NODE_5046_length_615_cov_7.463563_pilon to pilon.fasta [pilon] Writing NODE_5047_length_615_cov_5.831984:1-615 changes to pilon.changes [pilon] Writing updated NODE_5047_length_615_cov_5.831984_pilon to pilon.fasta [pilon] Writing NODE_5048_length_615_cov_5.052632:1-615 changes to pilon.changes [pilon] Writing updated NODE_5048_length_615_cov_5.052632_pilon to pilon.fasta [pilon] Writing NODE_5049_length_615_cov_4.040486:1-615 changes to pilon.changes [pilon] Writing updated NODE_5049_length_615_cov_4.040486_pilon to pilon.fasta [pilon] Writing NODE_5050_length_615_cov_2.261134:1-615 changes to pilon.changes [pilon] Writing updated NODE_5050_length_615_cov_2.261134_pilon to pilon.fasta [pilon] Writing NODE_5051_length_615_cov_1.522267:1-615 changes to pilon.changes [pilon] Writing updated NODE_5051_length_615_cov_1.522267_pilon to pilon.fasta [pilon] Writing NODE_5052_length_615_cov_0.923077:1-615 changes to pilon.changes [pilon] Writing updated NODE_5052_length_615_cov_0.923077_pilon to pilon.fasta [pilon] Writing NODE_5053_length_614_cov_42.868154:1-614 changes to pilon.changes [pilon] Writing updated NODE_5053_length_614_cov_42.868154_pilon to pilon.fasta [pilon] Writing NODE_5054_length_614_cov_26.574037:1-614 changes to pilon.changes [pilon] Writing updated NODE_5054_length_614_cov_26.574037_pilon to pilon.fasta [pilon] Writing NODE_5055_length_614_cov_26.229209:1-614 changes to pilon.changes [pilon] Writing updated NODE_5055_length_614_cov_26.229209_pilon to pilon.fasta [pilon] Writing NODE_5056_length_614_cov_20.421907:1-614 changes to pilon.changes [pilon] Writing updated NODE_5056_length_614_cov_20.421907_pilon to pilon.fasta [pilon] Writing NODE_5057_length_614_cov_15.397566:1-614 changes to pilon.changes [pilon] Writing updated NODE_5057_length_614_cov_15.397566_pilon to pilon.fasta [pilon] Writing NODE_5058_length_614_cov_12.182556:1-614 changes to pilon.changes [pilon] Writing updated NODE_5058_length_614_cov_12.182556_pilon to pilon.fasta [pilon] Writing NODE_5059_length_614_cov_1.945233:1-614 changes to pilon.changes [pilon] Writing updated NODE_5059_length_614_cov_1.945233_pilon to pilon.fasta [pilon] Writing NODE_5060_length_614_cov_1.667343:1-614 changes to pilon.changes [pilon] Writing updated NODE_5060_length_614_cov_1.667343_pilon to pilon.fasta [pilon] Writing NODE_5061_length_614_cov_0.545639:1-614 changes to pilon.changes [pilon] Writing updated NODE_5061_length_614_cov_0.545639_pilon to pilon.fasta [pilon] Writing NODE_5062_length_613_cov_57.225610:1-613 changes to pilon.changes [pilon] Writing updated NODE_5062_length_613_cov_57.225610_pilon to pilon.fasta [pilon] Writing NODE_5063_length_613_cov_48.837398:1-613 changes to pilon.changes [pilon] Writing updated NODE_5063_length_613_cov_48.837398_pilon to pilon.fasta [pilon] Writing NODE_5064_length_613_cov_37.087398:1-613 changes to pilon.changes [pilon] Writing updated NODE_5064_length_613_cov_37.087398_pilon to pilon.fasta [pilon] Writing NODE_5065_length_613_cov_23.650407:1-613 changes to pilon.changes [pilon] Writing updated NODE_5065_length_613_cov_23.650407_pilon to pilon.fasta [pilon] Writing NODE_5066_length_613_cov_22.416667:1-613 changes to pilon.changes [pilon] Writing updated NODE_5066_length_613_cov_22.416667_pilon to pilon.fasta [pilon] Writing NODE_5067_length_613_cov_19.778455:1-613 changes to pilon.changes [pilon] Writing updated NODE_5067_length_613_cov_19.778455_pilon to pilon.fasta [pilon] Writing NODE_5068_length_613_cov_14.390244:1-613 changes to pilon.changes [pilon] Writing updated NODE_5068_length_613_cov_14.390244_pilon to pilon.fasta [pilon] Writing NODE_5069_length_613_cov_13.308943:1-613 changes to pilon.changes [pilon] Writing updated NODE_5069_length_613_cov_13.308943_pilon to pilon.fasta [pilon] Writing NODE_5070_length_613_cov_10.495935:1-613 changes to pilon.changes [pilon] Writing updated NODE_5070_length_613_cov_10.495935_pilon to pilon.fasta [pilon] Writing NODE_5071_length_613_cov_1.902439:1-613 changes to pilon.changes [pilon] Writing updated NODE_5071_length_613_cov_1.902439_pilon to pilon.fasta [pilon] Writing NODE_5072_length_613_cov_0.955285:1-613 changes to pilon.changes [pilon] Writing updated NODE_5072_length_613_cov_0.955285_pilon to pilon.fasta [pilon] Writing NODE_5073_length_612_cov_41.784114:1-612 changes to pilon.changes [pilon] Writing updated NODE_5073_length_612_cov_41.784114_pilon to pilon.fasta [pilon] Writing NODE_5074_length_612_cov_27.702648:1-612 changes to pilon.changes [pilon] Writing updated NODE_5074_length_612_cov_27.702648_pilon to pilon.fasta [pilon] Writing NODE_5075_length_612_cov_15.615071:1-612 changes to pilon.changes [pilon] Writing updated NODE_5075_length_612_cov_15.615071_pilon to pilon.fasta [pilon] Writing NODE_5076_length_612_cov_5.594705:1-612 changes to pilon.changes [pilon] Writing updated NODE_5076_length_612_cov_5.594705_pilon to pilon.fasta [pilon] Writing NODE_5077_length_612_cov_3.205703:1-612 changes to pilon.changes [pilon] Writing updated NODE_5077_length_612_cov_3.205703_pilon to pilon.fasta [pilon] Writing NODE_5078_length_612_cov_3.014257:1-612 changes to pilon.changes [pilon] Writing updated NODE_5078_length_612_cov_3.014257_pilon to pilon.fasta [pilon] Writing NODE_5079_length_612_cov_1.299389:1-612 changes to pilon.changes [pilon] Writing updated NODE_5079_length_612_cov_1.299389_pilon to pilon.fasta [pilon] Writing NODE_5080_length_612_cov_0.804481:1-612 changes to pilon.changes [pilon] Writing updated NODE_5080_length_612_cov_0.804481_pilon to pilon.fasta [pilon] Writing NODE_5081_length_611_cov_84.622449:1-611 changes to pilon.changes [pilon] Writing updated NODE_5081_length_611_cov_84.622449_pilon to pilon.fasta [pilon] Writing NODE_5082_length_611_cov_49.765306:1-611 changes to pilon.changes [pilon] Writing updated NODE_5082_length_611_cov_49.765306_pilon to pilon.fasta [pilon] Writing NODE_5083_length_611_cov_33.265306:1-611 changes to pilon.changes [pilon] Writing updated NODE_5083_length_611_cov_33.265306_pilon to pilon.fasta [pilon] Writing NODE_5084_length_611_cov_32.395918:1-611 changes to pilon.changes [pilon] Writing updated NODE_5084_length_611_cov_32.395918_pilon to pilon.fasta [pilon] Writing NODE_5085_length_611_cov_27.067347:1-611 changes to pilon.changes [pilon] Writing updated NODE_5085_length_611_cov_27.067347_pilon to pilon.fasta [pilon] Writing NODE_5086_length_611_cov_24.218367:1-611 changes to pilon.changes [pilon] Writing updated NODE_5086_length_611_cov_24.218367_pilon to pilon.fasta [pilon] Writing NODE_5087_length_611_cov_20.216327:1-611 changes to pilon.changes [pilon] Writing updated NODE_5087_length_611_cov_20.216327_pilon to pilon.fasta [pilon] Writing NODE_5088_length_611_cov_15.418367:1-611 changes to pilon.changes [pilon] Writing updated NODE_5088_length_611_cov_15.418367_pilon to pilon.fasta [pilon] Writing NODE_5089_length_611_cov_9.297959:1-611 changes to pilon.changes [pilon] Writing updated NODE_5089_length_611_cov_9.297959_pilon to pilon.fasta [pilon] Writing NODE_5090_length_611_cov_4.228571:1-611 changes to pilon.changes [pilon] Writing updated NODE_5090_length_611_cov_4.228571_pilon to pilon.fasta [pilon] Writing NODE_5091_length_611_cov_2.934694:1-611 changes to pilon.changes [pilon] Writing updated NODE_5091_length_611_cov_2.934694_pilon to pilon.fasta [pilon] Writing NODE_5092_length_611_cov_2.761224:1-611 changes to pilon.changes [pilon] Writing updated NODE_5092_length_611_cov_2.761224_pilon to pilon.fasta [pilon] Writing NODE_5093_length_611_cov_1.906122:1-611 changes to pilon.changes [pilon] Writing updated NODE_5093_length_611_cov_1.906122_pilon to pilon.fasta [pilon] Writing NODE_5094_length_611_cov_1.261224:1-611 changes to pilon.changes [pilon] Writing updated NODE_5094_length_611_cov_1.261224_pilon to pilon.fasta [pilon] Writing NODE_5095_length_611_cov_0.904082:1-611 changes to pilon.changes [pilon] Writing updated NODE_5095_length_611_cov_0.904082_pilon to pilon.fasta [pilon] Writing NODE_5096_length_610_cov_49.979550:1-610 changes to pilon.changes [pilon] Writing updated NODE_5096_length_610_cov_49.979550_pilon to pilon.fasta [pilon] Writing NODE_5097_length_610_cov_42.323108:1-610 changes to pilon.changes [pilon] Writing updated NODE_5097_length_610_cov_42.323108_pilon to pilon.fasta [pilon] Writing NODE_5098_length_610_cov_38.269939:1-610 changes to pilon.changes [pilon] Writing updated NODE_5098_length_610_cov_38.269939_pilon to pilon.fasta [pilon] Writing NODE_5099_length_610_cov_32.807771:1-610 changes to pilon.changes [pilon] Writing updated NODE_5099_length_610_cov_32.807771_pilon to pilon.fasta [pilon] Writing NODE_5100_length_610_cov_30.124744:1-610 changes to pilon.changes [pilon] Writing updated NODE_5100_length_610_cov_30.124744_pilon to pilon.fasta [pilon] Writing NODE_5101_length_610_cov_16.858896:1-610 changes to pilon.changes [pilon] Writing updated NODE_5101_length_610_cov_16.858896_pilon to pilon.fasta [pilon] Writing NODE_5102_length_610_cov_14.218814:1-610 changes to pilon.changes [pilon] Writing updated NODE_5102_length_610_cov_14.218814_pilon to pilon.fasta [pilon] Writing NODE_5103_length_610_cov_13.801636:1-610 changes to pilon.changes [pilon] Writing updated NODE_5103_length_610_cov_13.801636_pilon to pilon.fasta [pilon] Writing NODE_5104_length_610_cov_2.936605:1-610 changes to pilon.changes [pilon] Writing updated NODE_5104_length_610_cov_2.936605_pilon to pilon.fasta [pilon] Writing NODE_5105_length_610_cov_2.922290:1-610 changes to pilon.changes [pilon] Writing updated NODE_5105_length_610_cov_2.922290_pilon to pilon.fasta [pilon] Writing NODE_5106_length_610_cov_1.801636:1-610 changes to pilon.changes [pilon] Writing updated NODE_5106_length_610_cov_1.801636_pilon to pilon.fasta [pilon] Writing NODE_5107_length_609_cov_40.069672:1-609 changes to pilon.changes [pilon] Writing updated NODE_5107_length_609_cov_40.069672_pilon to pilon.fasta [pilon] Writing NODE_5108_length_609_cov_21.823770:1-609 changes to pilon.changes [pilon] Writing updated NODE_5108_length_609_cov_21.823770_pilon to pilon.fasta [pilon] Writing NODE_5109_length_609_cov_21.719262:1-609 changes to pilon.changes [pilon] Writing updated NODE_5109_length_609_cov_21.719262_pilon to pilon.fasta [pilon] Writing NODE_5110_length_609_cov_17.688525:1-609 changes to pilon.changes [pilon] Writing updated NODE_5110_length_609_cov_17.688525_pilon to pilon.fasta [pilon] Writing NODE_5111_length_609_cov_10.161885:1-609 changes to pilon.changes [pilon] Writing updated NODE_5111_length_609_cov_10.161885_pilon to pilon.fasta [pilon] Writing NODE_5112_length_609_cov_7.034836:1-609 changes to pilon.changes [pilon] Writing updated NODE_5112_length_609_cov_7.034836_pilon to pilon.fasta [pilon] Writing NODE_5113_length_609_cov_2.413934:1-609 changes to pilon.changes [pilon] Writing updated NODE_5113_length_609_cov_2.413934_pilon to pilon.fasta [pilon] Writing NODE_5114_length_609_cov_1.764344:1-609 changes to pilon.changes [pilon] Writing updated NODE_5114_length_609_cov_1.764344_pilon to pilon.fasta [pilon] Writing NODE_5115_length_608_cov_39.308008:1-608 changes to pilon.changes [pilon] Writing updated NODE_5115_length_608_cov_39.308008_pilon to pilon.fasta [pilon] Writing NODE_5116_length_608_cov_36.195072:1-608 changes to pilon.changes [pilon] Writing updated NODE_5116_length_608_cov_36.195072_pilon to pilon.fasta [pilon] Writing NODE_5117_length_608_cov_35.112936:1-608 changes to pilon.changes [pilon] Writing updated NODE_5117_length_608_cov_35.112936_pilon to pilon.fasta [pilon] Writing NODE_5118_length_608_cov_33.209446:1-608 changes to pilon.changes [pilon] Writing updated NODE_5118_length_608_cov_33.209446_pilon to pilon.fasta [pilon] Writing NODE_5119_length_608_cov_32.593429:1-608 changes to pilon.changes [pilon] Writing updated NODE_5119_length_608_cov_32.593429_pilon to pilon.fasta [pilon] Writing NODE_5120_length_608_cov_29.303901:1-608 changes to pilon.changes [pilon] Writing updated NODE_5120_length_608_cov_29.303901_pilon to pilon.fasta [pilon] Writing NODE_5121_length_608_cov_23.024641:1-608 changes to pilon.changes [pilon] Writing updated NODE_5121_length_608_cov_23.024641_pilon to pilon.fasta [pilon] Writing NODE_5122_length_608_cov_5.293634:1-608 changes to pilon.changes [pilon] Writing updated NODE_5122_length_608_cov_5.293634_pilon to pilon.fasta [pilon] Writing NODE_5123_length_608_cov_5.223819:1-608 changes to pilon.changes [pilon] Writing updated NODE_5123_length_608_cov_5.223819_pilon to pilon.fasta [pilon] Writing NODE_5124_length_608_cov_3.794661:1-608 changes to pilon.changes [pilon] Writing updated NODE_5124_length_608_cov_3.794661_pilon to pilon.fasta [pilon] Writing NODE_5125_length_608_cov_3.628337:1-608 changes to pilon.changes [pilon] Writing updated NODE_5125_length_608_cov_3.628337_pilon to pilon.fasta [pilon] Writing NODE_5126_length_608_cov_2.669405:1-608 changes to pilon.changes [pilon] Writing updated NODE_5126_length_608_cov_2.669405_pilon to pilon.fasta [pilon] Writing NODE_5127_length_608_cov_1.640657:1-608 changes to pilon.changes [pilon] Writing updated NODE_5127_length_608_cov_1.640657_pilon to pilon.fasta [pilon] Writing NODE_5128_length_608_cov_1.400411:1-608 changes to pilon.changes [pilon] Writing updated NODE_5128_length_608_cov_1.400411_pilon to pilon.fasta [pilon] Writing NODE_5129_length_608_cov_0.710472:1-608 changes to pilon.changes [pilon] Writing updated NODE_5129_length_608_cov_0.710472_pilon to pilon.fasta [pilon] Writing NODE_5130_length_608_cov_0.659138:1-608 changes to pilon.changes [pilon] Writing updated NODE_5130_length_608_cov_0.659138_pilon to pilon.fasta [pilon] Writing NODE_5131_length_607_cov_42.901235:1-607 changes to pilon.changes [pilon] Writing updated NODE_5131_length_607_cov_42.901235_pilon to pilon.fasta [pilon] Writing NODE_5132_length_607_cov_34.088477:1-607 changes to pilon.changes [pilon] Writing updated NODE_5132_length_607_cov_34.088477_pilon to pilon.fasta [pilon] Writing NODE_5133_length_607_cov_27.267490:1-607 changes to pilon.changes [pilon] Writing updated NODE_5133_length_607_cov_27.267490_pilon to pilon.fasta [pilon] Writing NODE_5134_length_607_cov_2.438272:1-607 changes to pilon.changes [pilon] Writing updated NODE_5134_length_607_cov_2.438272_pilon to pilon.fasta [pilon] Writing NODE_5135_length_607_cov_1.989712:1-607 changes to pilon.changes [pilon] Writing updated NODE_5135_length_607_cov_1.989712_pilon to pilon.fasta [pilon] Writing NODE_5136_length_607_cov_1.983539:1-607 changes to pilon.changes [pilon] Writing updated NODE_5136_length_607_cov_1.983539_pilon to pilon.fasta [pilon] Writing NODE_5137_length_607_cov_1.781893:1-607 changes to pilon.changes [pilon] Writing updated NODE_5137_length_607_cov_1.781893_pilon to pilon.fasta [pilon] Writing NODE_5138_length_607_cov_1.043210:1-607 changes to pilon.changes [pilon] Writing updated NODE_5138_length_607_cov_1.043210_pilon to pilon.fasta [pilon] Writing NODE_5139_length_606_cov_38.404124:1-606 changes to pilon.changes [pilon] Writing updated NODE_5139_length_606_cov_38.404124_pilon to pilon.fasta [pilon] Writing NODE_5140_length_606_cov_36.455670:1-606 changes to pilon.changes [pilon] Writing updated NODE_5140_length_606_cov_36.455670_pilon to pilon.fasta [pilon] Writing NODE_5141_length_606_cov_32.482474:1-606 changes to pilon.changes [pilon] Writing updated NODE_5141_length_606_cov_32.482474_pilon to pilon.fasta [pilon] Writing NODE_5142_length_606_cov_27.364948:1-606 changes to pilon.changes [pilon] Writing updated NODE_5142_length_606_cov_27.364948_pilon to pilon.fasta [pilon] Writing NODE_5143_length_606_cov_19.981443:1-606 changes to pilon.changes [pilon] Writing updated NODE_5143_length_606_cov_19.981443_pilon to pilon.fasta [pilon] Writing NODE_5144_length_606_cov_16.981443:1-606 changes to pilon.changes [pilon] Writing updated NODE_5144_length_606_cov_16.981443_pilon to pilon.fasta [pilon] Writing NODE_5145_length_606_cov_15.676289:1-606 changes to pilon.changes [pilon] Writing updated NODE_5145_length_606_cov_15.676289_pilon to pilon.fasta [pilon] Writing NODE_5146_length_606_cov_15.612371:1-606 changes to pilon.changes [pilon] Writing updated NODE_5146_length_606_cov_15.612371_pilon to pilon.fasta [pilon] Writing NODE_5147_length_606_cov_14.292784:1-606 changes to pilon.changes [pilon] Writing updated NODE_5147_length_606_cov_14.292784_pilon to pilon.fasta [pilon] Writing NODE_5148_length_606_cov_12.307216:1-606 changes to pilon.changes [pilon] Writing updated NODE_5148_length_606_cov_12.307216_pilon to pilon.fasta [pilon] Writing NODE_5149_length_606_cov_11.851546:1-606 changes to pilon.changes [pilon] Writing updated NODE_5149_length_606_cov_11.851546_pilon to pilon.fasta [pilon] Writing NODE_5150_length_606_cov_4.925773:1-606 changes to pilon.changes [pilon] Writing updated NODE_5150_length_606_cov_4.925773_pilon to pilon.fasta [pilon] Writing NODE_5151_length_606_cov_4.441237:1-606 changes to pilon.changes [pilon] Writing updated NODE_5151_length_606_cov_4.441237_pilon to pilon.fasta [pilon] Writing NODE_5152_length_606_cov_2.158763:1-606 changes to pilon.changes [pilon] Writing updated NODE_5152_length_606_cov_2.158763_pilon to pilon.fasta [pilon] Writing NODE_5153_length_606_cov_1.468041:1-606 changes to pilon.changes [pilon] Writing updated NODE_5153_length_606_cov_1.468041_pilon to pilon.fasta [pilon] Writing NODE_5154_length_606_cov_1.389691:1-606 changes to pilon.changes [pilon] Writing updated NODE_5154_length_606_cov_1.389691_pilon to pilon.fasta [pilon] Writing NODE_5155_length_605_cov_64.204545:1-605 changes to pilon.changes [pilon] Writing updated NODE_5155_length_605_cov_64.204545_pilon to pilon.fasta [pilon] Writing NODE_5156_length_605_cov_22.785124:1-605 changes to pilon.changes [pilon] Writing updated NODE_5156_length_605_cov_22.785124_pilon to pilon.fasta [pilon] Writing NODE_5157_length_605_cov_19.045455:1-605 changes to pilon.changes [pilon] Writing updated NODE_5157_length_605_cov_19.045455_pilon to pilon.fasta [pilon] Writing NODE_5158_length_605_cov_14.340909:1-605 changes to pilon.changes [pilon] Writing updated NODE_5158_length_605_cov_14.340909_pilon to pilon.fasta [pilon] Writing NODE_5159_length_605_cov_10.766529:1-605 changes to pilon.changes [pilon] Writing updated NODE_5159_length_605_cov_10.766529_pilon to pilon.fasta [pilon] Writing NODE_5160_length_605_cov_9.380165:1-605 changes to pilon.changes [pilon] Writing updated NODE_5160_length_605_cov_9.380165_pilon to pilon.fasta [pilon] Writing NODE_5161_length_605_cov_6.045455:1-605 changes to pilon.changes [pilon] Writing updated NODE_5161_length_605_cov_6.045455_pilon to pilon.fasta [pilon] Writing NODE_5162_length_605_cov_4.867769:1-605 changes to pilon.changes [pilon] Writing updated NODE_5162_length_605_cov_4.867769_pilon to pilon.fasta [pilon] Writing NODE_5163_length_605_cov_2.933884:1-605 changes to pilon.changes [pilon] Writing updated NODE_5163_length_605_cov_2.933884_pilon to pilon.fasta [pilon] Writing NODE_5164_length_605_cov_1.902893:1-605 changes to pilon.changes [pilon] Writing updated NODE_5164_length_605_cov_1.902893_pilon to pilon.fasta [pilon] Writing NODE_5165_length_604_cov_51.341615:1-604 changes to pilon.changes [pilon] Writing updated NODE_5165_length_604_cov_51.341615_pilon to pilon.fasta [pilon] Writing NODE_5166_length_604_cov_19.107660:1-604 changes to pilon.changes [pilon] Writing updated NODE_5166_length_604_cov_19.107660_pilon to pilon.fasta [pilon] Writing NODE_5167_length_604_cov_18.908903:1-604 changes to pilon.changes [pilon] Writing updated NODE_5167_length_604_cov_18.908903_pilon to pilon.fasta [pilon] Writing NODE_5168_length_604_cov_17.536232:1-604 changes to pilon.changes [pilon] Writing updated NODE_5168_length_604_cov_17.536232_pilon to pilon.fasta [pilon] Writing NODE_5169_length_604_cov_4.165631:1-604 changes to pilon.changes [pilon] Writing updated NODE_5169_length_604_cov_4.165631_pilon to pilon.fasta [pilon] Writing NODE_5170_length_604_cov_1.614907:1-604 changes to pilon.changes [pilon] Writing updated NODE_5170_length_604_cov_1.614907_pilon to pilon.fasta [pilon] Writing NODE_5171_length_603_cov_52.390041:1-603 changes to pilon.changes [pilon] Writing updated NODE_5171_length_603_cov_52.390041_pilon to pilon.fasta [pilon] Writing NODE_5172_length_603_cov_49.076763:1-603 changes to pilon.changes [pilon] Writing updated NODE_5172_length_603_cov_49.076763_pilon to pilon.fasta [pilon] Writing NODE_5173_length_603_cov_41.369295:1-603 changes to pilon.changes [pilon] Writing updated NODE_5173_length_603_cov_41.369295_pilon to pilon.fasta [pilon] Writing NODE_5174_length_603_cov_33.634855:1-603 changes to pilon.changes [pilon] Writing updated NODE_5174_length_603_cov_33.634855_pilon to pilon.fasta [pilon] Writing NODE_5175_length_603_cov_30.000000:1-603 changes to pilon.changes [pilon] Writing updated NODE_5175_length_603_cov_30.000000_pilon to pilon.fasta [pilon] Writing NODE_5176_length_603_cov_26.780083:1-603 changes to pilon.changes [pilon] Writing updated NODE_5176_length_603_cov_26.780083_pilon to pilon.fasta [pilon] Writing NODE_5177_length_603_cov_21.746888:1-603 changes to pilon.changes [pilon] Writing updated NODE_5177_length_603_cov_21.746888_pilon to pilon.fasta [pilon] Writing NODE_5178_length_603_cov_16.917012:1-603 changes to pilon.changes [pilon] Writing updated NODE_5178_length_603_cov_16.917012_pilon to pilon.fasta [pilon] Writing NODE_5179_length_603_cov_15.159751:1-603 changes to pilon.changes [pilon] Writing updated NODE_5179_length_603_cov_15.159751_pilon to pilon.fasta [pilon] Writing NODE_5180_length_603_cov_13.786307:1-603 changes to pilon.changes [pilon] Writing updated NODE_5180_length_603_cov_13.786307_pilon to pilon.fasta [pilon] Writing NODE_5181_length_603_cov_12.605809:1-603 changes to pilon.changes [pilon] Writing updated NODE_5181_length_603_cov_12.605809_pilon to pilon.fasta [pilon] Writing NODE_5182_length_603_cov_12.201245:1-603 changes to pilon.changes [pilon] Writing updated NODE_5182_length_603_cov_12.201245_pilon to pilon.fasta [pilon] Writing NODE_5183_length_603_cov_11.294606:1-603 changes to pilon.changes [pilon] Writing updated NODE_5183_length_603_cov_11.294606_pilon to pilon.fasta [pilon] Writing NODE_5184_length_603_cov_9.458506:1-603 changes to pilon.changes [pilon] Writing updated NODE_5184_length_603_cov_9.458506_pilon to pilon.fasta [pilon] Writing NODE_5185_length_603_cov_5.985477:1-603 changes to pilon.changes [pilon] Writing updated NODE_5185_length_603_cov_5.985477_pilon to pilon.fasta [pilon] Writing NODE_5186_length_603_cov_1.844398:1-603 changes to pilon.changes [pilon] Writing updated NODE_5186_length_603_cov_1.844398_pilon to pilon.fasta [pilon] Writing NODE_5187_length_603_cov_1.784232:1-603 changes to pilon.changes [pilon] Writing updated NODE_5187_length_603_cov_1.784232_pilon to pilon.fasta [pilon] Writing NODE_5188_length_603_cov_1.278008:1-603 changes to pilon.changes [pilon] Writing updated NODE_5188_length_603_cov_1.278008_pilon to pilon.fasta [pilon] Writing NODE_5189_length_602_cov_54.723493:1-602 changes to pilon.changes [pilon] Writing updated NODE_5189_length_602_cov_54.723493_pilon to pilon.fasta [pilon] Writing NODE_5190_length_602_cov_41.900208:1-602 changes to pilon.changes [pilon] Writing updated NODE_5190_length_602_cov_41.900208_pilon to pilon.fasta [pilon] Writing NODE_5191_length_602_cov_38.546778:1-602 changes to pilon.changes [pilon] Writing updated NODE_5191_length_602_cov_38.546778_pilon to pilon.fasta [pilon] Writing NODE_5192_length_602_cov_22.137214:1-602 changes to pilon.changes [pilon] Writing updated NODE_5192_length_602_cov_22.137214_pilon to pilon.fasta [pilon] Writing NODE_5193_length_602_cov_20.960499:1-602 changes to pilon.changes [pilon] Writing updated NODE_5193_length_602_cov_20.960499_pilon to pilon.fasta [pilon] Writing NODE_5194_length_602_cov_19.696466:1-602 changes to pilon.changes [pilon] Writing updated NODE_5194_length_602_cov_19.696466_pilon to pilon.fasta [pilon] Writing NODE_5195_length_602_cov_19.357588:1-602 changes to pilon.changes [pilon] Writing updated NODE_5195_length_602_cov_19.357588_pilon to pilon.fasta [pilon] Writing NODE_5196_length_602_cov_16.528067:1-602 changes to pilon.changes [pilon] Writing updated NODE_5196_length_602_cov_16.528067_pilon to pilon.fasta [pilon] Writing NODE_5197_length_602_cov_8.149688:1-602 changes to pilon.changes [pilon] Writing updated NODE_5197_length_602_cov_8.149688_pilon to pilon.fasta [pilon] Writing NODE_5198_length_602_cov_2.380457:1-602 changes to pilon.changes [pilon] Writing updated NODE_5198_length_602_cov_2.380457_pilon to pilon.fasta [pilon] Writing NODE_5199_length_602_cov_1.706861:1-602 changes to pilon.changes [pilon] Writing updated NODE_5199_length_602_cov_1.706861_pilon to pilon.fasta [pilon] Writing NODE_5200_length_601_cov_63.800000:1-601 changes to pilon.changes [pilon] Writing updated NODE_5200_length_601_cov_63.800000_pilon to pilon.fasta [pilon] Writing NODE_5201_length_601_cov_37.939583:1-601 changes to pilon.changes [pilon] Writing updated NODE_5201_length_601_cov_37.939583_pilon to pilon.fasta [pilon] Writing NODE_5202_length_601_cov_37.425000:1-601 changes to pilon.changes [pilon] Writing updated NODE_5202_length_601_cov_37.425000_pilon to pilon.fasta [pilon] Writing NODE_5203_length_601_cov_17.795833:1-601 changes to pilon.changes [pilon] Writing updated NODE_5203_length_601_cov_17.795833_pilon to pilon.fasta [pilon] Writing NODE_5204_length_601_cov_12.783333:1-601 changes to pilon.changes [pilon] Writing updated NODE_5204_length_601_cov_12.783333_pilon to pilon.fasta [pilon] Writing NODE_5205_length_601_cov_6.418750:1-601 changes to pilon.changes [pilon] Writing updated NODE_5205_length_601_cov_6.418750_pilon to pilon.fasta [pilon] Writing NODE_5206_length_601_cov_3.629167:1-601 changes to pilon.changes [pilon] Writing updated NODE_5206_length_601_cov_3.629167_pilon to pilon.fasta [pilon] Writing NODE_5207_length_601_cov_1.752083:1-601 changes to pilon.changes [pilon] Writing updated NODE_5207_length_601_cov_1.752083_pilon to pilon.fasta [pilon] Writing NODE_5208_length_601_cov_1.458333:1-601 changes to pilon.changes [pilon] Writing updated NODE_5208_length_601_cov_1.458333_pilon to pilon.fasta [pilon] Writing NODE_5209_length_601_cov_0.556250:1-601 changes to pilon.changes [pilon] Writing updated NODE_5209_length_601_cov_0.556250_pilon to pilon.fasta [pilon] Writing NODE_5210_length_600_cov_69.469729:1-600 changes to pilon.changes [pilon] Writing updated NODE_5210_length_600_cov_69.469729_pilon to pilon.fasta [pilon] Writing NODE_5211_length_600_cov_37.179541:1-600 changes to pilon.changes [pilon] Writing updated NODE_5211_length_600_cov_37.179541_pilon to pilon.fasta [pilon] Writing NODE_5212_length_600_cov_25.281837:1-600 changes to pilon.changes [pilon] Writing updated NODE_5212_length_600_cov_25.281837_pilon to pilon.fasta [pilon] Writing NODE_5213_length_600_cov_22.711900:1-600 changes to pilon.changes [pilon] Writing updated NODE_5213_length_600_cov_22.711900_pilon to pilon.fasta [pilon] Writing NODE_5214_length_600_cov_22.586639:1-600 changes to pilon.changes [pilon] Writing updated NODE_5214_length_600_cov_22.586639_pilon to pilon.fasta [pilon] Writing NODE_5215_length_600_cov_21.296451:1-600 changes to pilon.changes [pilon] Writing updated NODE_5215_length_600_cov_21.296451_pilon to pilon.fasta [pilon] Writing NODE_5216_length_600_cov_17.066806:1-600 changes to pilon.changes [pilon] Writing updated NODE_5216_length_600_cov_17.066806_pilon to pilon.fasta [pilon] Writing NODE_5217_length_600_cov_16.438413:1-600 changes to pilon.changes [pilon] Writing updated NODE_5217_length_600_cov_16.438413_pilon to pilon.fasta [pilon] Writing NODE_5218_length_600_cov_13.225470:1-600 changes to pilon.changes [pilon] Writing updated NODE_5218_length_600_cov_13.225470_pilon to pilon.fasta [pilon] Writing NODE_5219_length_600_cov_10.874739:1-600 changes to pilon.changes [pilon] Writing updated NODE_5219_length_600_cov_10.874739_pilon to pilon.fasta [pilon] Writing NODE_5220_length_600_cov_1.632568:1-600 changes to pilon.changes [pilon] Writing updated NODE_5220_length_600_cov_1.632568_pilon to pilon.fasta [pilon] Writing NODE_5221_length_600_cov_1.098121:1-600 changes to pilon.changes [pilon] Writing updated NODE_5221_length_600_cov_1.098121_pilon to pilon.fasta [pilon] Writing NODE_5222_length_599_cov_27.083682:1-599 changes to pilon.changes [pilon] Writing updated NODE_5222_length_599_cov_27.083682_pilon to pilon.fasta [pilon] Writing NODE_5223_length_599_cov_20.433054:1-599 changes to pilon.changes [pilon] Writing updated NODE_5223_length_599_cov_20.433054_pilon to pilon.fasta [pilon] Writing NODE_5224_length_599_cov_10.215481:1-599 changes to pilon.changes [pilon] Writing updated NODE_5224_length_599_cov_10.215481_pilon to pilon.fasta [pilon] Writing NODE_5225_length_599_cov_5.338912:1-599 changes to pilon.changes [pilon] Writing updated NODE_5225_length_599_cov_5.338912_pilon to pilon.fasta [pilon] Writing NODE_5226_length_599_cov_3.983264:1-599 changes to pilon.changes [pilon] Writing updated NODE_5226_length_599_cov_3.983264_pilon to pilon.fasta [pilon] Writing NODE_5227_length_599_cov_3.765690:1-599 changes to pilon.changes [pilon] Writing updated NODE_5227_length_599_cov_3.765690_pilon to pilon.fasta [pilon] Writing NODE_5228_length_599_cov_0.661088:1-599 changes to pilon.changes [pilon] Writing updated NODE_5228_length_599_cov_0.661088_pilon to pilon.fasta [pilon] Writing NODE_5229_length_598_cov_48.863732:1-598 changes to pilon.changes [pilon] Writing updated NODE_5229_length_598_cov_48.863732_pilon to pilon.fasta [pilon] Writing NODE_5230_length_598_cov_26.280922:1-598 changes to pilon.changes [pilon] Writing updated NODE_5230_length_598_cov_26.280922_pilon to pilon.fasta [pilon] Writing NODE_5231_length_598_cov_4.117400:1-598 changes to pilon.changes [pilon] Writing updated NODE_5231_length_598_cov_4.117400_pilon to pilon.fasta [pilon] Writing NODE_5232_length_598_cov_3.029350:1-598 changes to pilon.changes [pilon] Writing updated NODE_5232_length_598_cov_3.029350_pilon to pilon.fasta [pilon] Writing NODE_5233_length_598_cov_2.584906:1-598 changes to pilon.changes [pilon] Writing updated NODE_5233_length_598_cov_2.584906_pilon to pilon.fasta [pilon] Writing NODE_5234_length_598_cov_1.939203:1-598 changes to pilon.changes [pilon] Writing updated NODE_5234_length_598_cov_1.939203_pilon to pilon.fasta [pilon] Writing NODE_5235_length_598_cov_0.507338:1-598 changes to pilon.changes [pilon] Writing updated NODE_5235_length_598_cov_0.507338_pilon to pilon.fasta [pilon] Writing NODE_5236_length_597_cov_40.468487:1-597 changes to pilon.changes [pilon] Writing updated NODE_5236_length_597_cov_40.468487_pilon to pilon.fasta [pilon] Writing NODE_5237_length_597_cov_18.289916:1-597 changes to pilon.changes [pilon] Writing updated NODE_5237_length_597_cov_18.289916_pilon to pilon.fasta [pilon] Writing NODE_5238_length_597_cov_16.310924:1-597 changes to pilon.changes [pilon] Writing updated NODE_5238_length_597_cov_16.310924_pilon to pilon.fasta [pilon] Writing NODE_5239_length_597_cov_15.947479:1-597 changes to pilon.changes [pilon] Writing updated NODE_5239_length_597_cov_15.947479_pilon to pilon.fasta [pilon] Writing NODE_5240_length_597_cov_15.743697:1-597 changes to pilon.changes [pilon] Writing updated NODE_5240_length_597_cov_15.743697_pilon to pilon.fasta [pilon] Writing NODE_5241_length_597_cov_14.661765:1-597 changes to pilon.changes [pilon] Writing updated NODE_5241_length_597_cov_14.661765_pilon to pilon.fasta [pilon] Writing NODE_5242_length_597_cov_8.871849:1-597 changes to pilon.changes [pilon] Writing updated NODE_5242_length_597_cov_8.871849_pilon to pilon.fasta [pilon] Writing NODE_5243_length_597_cov_6.243697:1-597 changes to pilon.changes [pilon] Writing updated NODE_5243_length_597_cov_6.243697_pilon to pilon.fasta [pilon] Writing NODE_5244_length_597_cov_5.586134:1-597 changes to pilon.changes [pilon] Writing updated NODE_5244_length_597_cov_5.586134_pilon to pilon.fasta [pilon] Writing NODE_5245_length_597_cov_3.172269:1-597 changes to pilon.changes [pilon] Writing updated NODE_5245_length_597_cov_3.172269_pilon to pilon.fasta [pilon] Writing NODE_5246_length_597_cov_2.985294:1-597 changes to pilon.changes [pilon] Writing updated NODE_5246_length_597_cov_2.985294_pilon to pilon.fasta [pilon] Writing NODE_5247_length_597_cov_2.632353:1-597 changes to pilon.changes [pilon] Writing updated NODE_5247_length_597_cov_2.632353_pilon to pilon.fasta [pilon] Writing NODE_5248_length_597_cov_1.884454:1-597 changes to pilon.changes [pilon] Writing updated NODE_5248_length_597_cov_1.884454_pilon to pilon.fasta [pilon] Writing NODE_5249_length_597_cov_1.724790:1-597 changes to pilon.changes [pilon] Writing updated NODE_5249_length_597_cov_1.724790_pilon to pilon.fasta [pilon] Writing NODE_5250_length_597_cov_1.096639:1-597 changes to pilon.changes [pilon] Writing updated NODE_5250_length_597_cov_1.096639_pilon to pilon.fasta [pilon] Writing NODE_5251_length_597_cov_0.855042:1-597 changes to pilon.changes [pilon] Writing updated NODE_5251_length_597_cov_0.855042_pilon to pilon.fasta [pilon] Writing NODE_5252_length_597_cov_0.657563:1-597 changes to pilon.changes [pilon] Writing updated NODE_5252_length_597_cov_0.657563_pilon to pilon.fasta [pilon] Writing NODE_5253_length_596_cov_21.077895:1-596 changes to pilon.changes [pilon] Writing updated NODE_5253_length_596_cov_21.077895_pilon to pilon.fasta [pilon] Writing NODE_5254_length_596_cov_17.294737:1-596 changes to pilon.changes [pilon] Writing updated NODE_5254_length_596_cov_17.294737_pilon to pilon.fasta [pilon] Writing NODE_5255_length_596_cov_16.088421:1-596 changes to pilon.changes [pilon] Writing updated NODE_5255_length_596_cov_16.088421_pilon to pilon.fasta [pilon] Writing NODE_5256_length_596_cov_15.709474:1-596 changes to pilon.changes [pilon] Writing updated NODE_5256_length_596_cov_15.709474_pilon to pilon.fasta [pilon] Writing NODE_5257_length_596_cov_13.968421:1-596 changes to pilon.changes [pilon] Writing updated NODE_5257_length_596_cov_13.968421_pilon to pilon.fasta [pilon] Writing NODE_5258_length_596_cov_13.132632:1-596 changes to pilon.changes [pilon] Writing updated NODE_5258_length_596_cov_13.132632_pilon to pilon.fasta [pilon] Writing NODE_5259_length_596_cov_11.056842:1-596 changes to pilon.changes [pilon] Writing updated NODE_5259_length_596_cov_11.056842_pilon to pilon.fasta [pilon] Writing NODE_5260_length_596_cov_3.524211:1-596 changes to pilon.changes [pilon] Writing updated NODE_5260_length_596_cov_3.524211_pilon to pilon.fasta [pilon] Writing NODE_5261_length_596_cov_2.762105:1-596 changes to pilon.changes [pilon] Writing updated NODE_5261_length_596_cov_2.762105_pilon to pilon.fasta [pilon] Writing NODE_5262_length_596_cov_2.513684:1-596 changes to pilon.changes [pilon] Writing updated NODE_5262_length_596_cov_2.513684_pilon to pilon.fasta [pilon] Writing NODE_5263_length_596_cov_1.212632:1-596 changes to pilon.changes [pilon] Writing updated NODE_5263_length_596_cov_1.212632_pilon to pilon.fasta [pilon] Writing NODE_5264_length_596_cov_0.545263:1-596 changes to pilon.changes [pilon] Writing updated NODE_5264_length_596_cov_0.545263_pilon to pilon.fasta [pilon] Writing NODE_5265_length_595_cov_29.327004:1-595 changes to pilon.changes [pilon] Writing updated NODE_5265_length_595_cov_29.327004_pilon to pilon.fasta [pilon] Writing NODE_5266_length_595_cov_26.135021:1-595 changes to pilon.changes [pilon] Writing updated NODE_5266_length_595_cov_26.135021_pilon to pilon.fasta [pilon] Writing NODE_5267_length_595_cov_11.748945:1-595 changes to pilon.changes [pilon] Writing updated NODE_5267_length_595_cov_11.748945_pilon to pilon.fasta [pilon] Writing NODE_5268_length_595_cov_3.436709:1-595 changes to pilon.changes [pilon] Writing updated NODE_5268_length_595_cov_3.436709_pilon to pilon.fasta [pilon] Writing NODE_5269_length_595_cov_2.086498:1-595 changes to pilon.changes [pilon] Writing updated NODE_5269_length_595_cov_2.086498_pilon to pilon.fasta [pilon] Writing NODE_5270_length_595_cov_1.704641:1-595 changes to pilon.changes [pilon] Writing updated NODE_5270_length_595_cov_1.704641_pilon to pilon.fasta [pilon] Writing NODE_5271_length_595_cov_1.390295:1-595 changes to pilon.changes [pilon] Writing updated NODE_5271_length_595_cov_1.390295_pilon to pilon.fasta [pilon] Writing NODE_5272_length_595_cov_0.932489:1-595 changes to pilon.changes [pilon] Writing updated NODE_5272_length_595_cov_0.932489_pilon to pilon.fasta [pilon] Writing NODE_5273_length_595_cov_0.909283:1-595 changes to pilon.changes [pilon] Writing updated NODE_5273_length_595_cov_0.909283_pilon to pilon.fasta [pilon] Writing NODE_5274_length_594_cov_39.431290:1-594 changes to pilon.changes [pilon] Writing updated NODE_5274_length_594_cov_39.431290_pilon to pilon.fasta [pilon] Writing NODE_5275_length_594_cov_26.706131:1-594 changes to pilon.changes [pilon] Writing updated NODE_5275_length_594_cov_26.706131_pilon to pilon.fasta [pilon] Writing NODE_5276_length_594_cov_24.465116:1-594 changes to pilon.changes [pilon] Writing updated NODE_5276_length_594_cov_24.465116_pilon to pilon.fasta [pilon] Writing NODE_5277_length_594_cov_23.699789:1-594 changes to pilon.changes [pilon] Writing updated NODE_5277_length_594_cov_23.699789_pilon to pilon.fasta [pilon] Writing NODE_5278_length_594_cov_20.915433:1-594 changes to pilon.changes [pilon] Writing updated NODE_5278_length_594_cov_20.915433_pilon to pilon.fasta [pilon] Writing NODE_5279_length_594_cov_20.033827:1-594 changes to pilon.changes [pilon] Writing updated NODE_5279_length_594_cov_20.033827_pilon to pilon.fasta [pilon] Writing NODE_5280_length_594_cov_17.805497:1-594 changes to pilon.changes [pilon] Writing updated NODE_5280_length_594_cov_17.805497_pilon to pilon.fasta [pilon] Writing NODE_5281_length_594_cov_8.896406:1-594 changes to pilon.changes [pilon] Writing updated NODE_5281_length_594_cov_8.896406_pilon to pilon.fasta [pilon] Writing NODE_5282_length_594_cov_7.530655:1-594 changes to pilon.changes [pilon] Writing updated NODE_5282_length_594_cov_7.530655_pilon to pilon.fasta [pilon] Writing NODE_5283_length_594_cov_4.566596:1-594 changes to pilon.changes [pilon] Writing updated NODE_5283_length_594_cov_4.566596_pilon to pilon.fasta [pilon] Writing NODE_5284_length_594_cov_3.564482:1-594 changes to pilon.changes [pilon] Writing updated NODE_5284_length_594_cov_3.564482_pilon to pilon.fasta [pilon] Writing NODE_5285_length_594_cov_2.566596:1-594 changes to pilon.changes [pilon] Writing updated NODE_5285_length_594_cov_2.566596_pilon to pilon.fasta [pilon] Writing NODE_5286_length_594_cov_1.365751:1-594 changes to pilon.changes [pilon] Writing updated NODE_5286_length_594_cov_1.365751_pilon to pilon.fasta [pilon] Writing NODE_5287_length_593_cov_35.849576:1-593 changes to pilon.changes [pilon] Writing updated NODE_5287_length_593_cov_35.849576_pilon to pilon.fasta [pilon] Writing NODE_5288_length_593_cov_27.828390:1-593 changes to pilon.changes [pilon] Writing updated NODE_5288_length_593_cov_27.828390_pilon to pilon.fasta [pilon] Writing NODE_5289_length_593_cov_26.794492:1-593 changes to pilon.changes [pilon] Writing updated NODE_5289_length_593_cov_26.794492_pilon to pilon.fasta [pilon] Writing NODE_5290_length_593_cov_25.317797:1-593 changes to pilon.changes [pilon] Writing updated NODE_5290_length_593_cov_25.317797_pilon to pilon.fasta [pilon] Writing NODE_5291_length_593_cov_22.718220:1-593 changes to pilon.changes [pilon] Writing updated NODE_5291_length_593_cov_22.718220_pilon to pilon.fasta [pilon] Writing NODE_5292_length_593_cov_12.572034:1-593 changes to pilon.changes [pilon] Writing updated NODE_5292_length_593_cov_12.572034_pilon to pilon.fasta [pilon] Writing NODE_5293_length_593_cov_5.836864:1-593 changes to pilon.changes [pilon] Writing updated NODE_5293_length_593_cov_5.836864_pilon to pilon.fasta [pilon] Writing NODE_5294_length_593_cov_2.158898:1-593 changes to pilon.changes [pilon] Writing updated NODE_5294_length_593_cov_2.158898_pilon to pilon.fasta [pilon] Writing NODE_5295_length_593_cov_2.105932:1-593 changes to pilon.changes [pilon] Writing updated NODE_5295_length_593_cov_2.105932_pilon to pilon.fasta [pilon] Writing NODE_5296_length_593_cov_1.811441:1-593 changes to pilon.changes [pilon] Writing updated NODE_5296_length_593_cov_1.811441_pilon to pilon.fasta [pilon] Writing NODE_5297_length_593_cov_1.680085:1-593 changes to pilon.changes [pilon] Writing updated NODE_5297_length_593_cov_1.680085_pilon to pilon.fasta [pilon] Writing NODE_5298_length_593_cov_1.042373:1-593 changes to pilon.changes [pilon] Writing updated NODE_5298_length_593_cov_1.042373_pilon to pilon.fasta [pilon] Writing NODE_5299_length_593_cov_0.955508:1-593 changes to pilon.changes [pilon] Writing updated NODE_5299_length_593_cov_0.955508_pilon to pilon.fasta [pilon] Writing NODE_5300_length_593_cov_0.584746:1-593 changes to pilon.changes [pilon] Writing updated NODE_5300_length_593_cov_0.584746_pilon to pilon.fasta [pilon] Writing NODE_5301_length_592_cov_49.454352:1-592 changes to pilon.changes [pilon] Writing updated NODE_5301_length_592_cov_49.454352_pilon to pilon.fasta [pilon] Writing NODE_5302_length_592_cov_31.734607:1-592 changes to pilon.changes [pilon] Writing updated NODE_5302_length_592_cov_31.734607_pilon to pilon.fasta [pilon] Writing NODE_5303_length_592_cov_30.314225:1-592 changes to pilon.changes [pilon] Writing updated NODE_5303_length_592_cov_30.314225_pilon to pilon.fasta [pilon] Writing NODE_5304_length_592_cov_21.588110:1-592 changes to pilon.changes [pilon] Writing updated NODE_5304_length_592_cov_21.588110_pilon to pilon.fasta [pilon] Writing NODE_5305_length_592_cov_13.588110:1-592 changes to pilon.changes [pilon] Writing updated NODE_5305_length_592_cov_13.588110_pilon to pilon.fasta [pilon] Writing NODE_5306_length_592_cov_4.547771:1-592 changes to pilon.changes [pilon] Writing updated NODE_5306_length_592_cov_4.547771_pilon to pilon.fasta [pilon] Writing NODE_5307_length_592_cov_3.216561:1-592 changes to pilon.changes [pilon] Writing updated NODE_5307_length_592_cov_3.216561_pilon to pilon.fasta [pilon] Writing NODE_5308_length_592_cov_1.838641:1-592 changes to pilon.changes [pilon] Writing updated NODE_5308_length_592_cov_1.838641_pilon to pilon.fasta [pilon] Writing NODE_5309_length_592_cov_1.414013:1-592 changes to pilon.changes [pilon] Writing updated NODE_5309_length_592_cov_1.414013_pilon to pilon.fasta [pilon] Writing NODE_5310_length_592_cov_1.284501:1-592 changes to pilon.changes [pilon] Writing updated NODE_5310_length_592_cov_1.284501_pilon to pilon.fasta [pilon] Writing NODE_5311_length_592_cov_1.002123:1-592 changes to pilon.changes [pilon] Writing updated NODE_5311_length_592_cov_1.002123_pilon to pilon.fasta [pilon] Writing NODE_5312_length_591_cov_56.072340:1-591 changes to pilon.changes [pilon] Writing updated NODE_5312_length_591_cov_56.072340_pilon to pilon.fasta [pilon] Writing NODE_5313_length_591_cov_36.617021:1-591 changes to pilon.changes [pilon] Writing updated NODE_5313_length_591_cov_36.617021_pilon to pilon.fasta [pilon] Writing NODE_5314_length_591_cov_31.940426:1-591 changes to pilon.changes [pilon] Writing updated NODE_5314_length_591_cov_31.940426_pilon to pilon.fasta [pilon] Writing NODE_5315_length_591_cov_23.912766:1-591 changes to pilon.changes [pilon] Writing updated NODE_5315_length_591_cov_23.912766_pilon to pilon.fasta [pilon] Writing NODE_5316_length_591_cov_21.570213:1-591 changes to pilon.changes [pilon] Writing updated NODE_5316_length_591_cov_21.570213_pilon to pilon.fasta [pilon] Writing NODE_5317_length_591_cov_15.251064:1-591 changes to pilon.changes [pilon] Writing updated NODE_5317_length_591_cov_15.251064_pilon to pilon.fasta [pilon] Writing NODE_5318_length_591_cov_12.025532:1-591 changes to pilon.changes [pilon] Writing updated NODE_5318_length_591_cov_12.025532_pilon to pilon.fasta [pilon] Writing NODE_5319_length_591_cov_10.334043:1-591 changes to pilon.changes [pilon] Writing updated NODE_5319_length_591_cov_10.334043_pilon to pilon.fasta [pilon] Writing NODE_5320_length_591_cov_4.455319:1-591 changes to pilon.changes [pilon] Writing updated NODE_5320_length_591_cov_4.455319_pilon to pilon.fasta [pilon] Writing NODE_5321_length_591_cov_3.148936:1-591 changes to pilon.changes [pilon] Writing updated NODE_5321_length_591_cov_3.148936_pilon to pilon.fasta [pilon] Writing NODE_5322_length_591_cov_2.325532:1-591 changes to pilon.changes [pilon] Writing updated NODE_5322_length_591_cov_2.325532_pilon to pilon.fasta [pilon] Writing NODE_5323_length_591_cov_2.257447:1-591 changes to pilon.changes [pilon] Writing updated NODE_5323_length_591_cov_2.257447_pilon to pilon.fasta [pilon] Writing NODE_5324_length_591_cov_1.340426:1-591 changes to pilon.changes [pilon] Writing updated NODE_5324_length_591_cov_1.340426_pilon to pilon.fasta [pilon] Writing NODE_5325_length_590_cov_55.343284:1-590 changes to pilon.changes [pilon] Writing updated NODE_5325_length_590_cov_55.343284_pilon to pilon.fasta [pilon] Writing NODE_5326_length_590_cov_53.034115:1-590 changes to pilon.changes [pilon] Writing updated NODE_5326_length_590_cov_53.034115_pilon to pilon.fasta [pilon] Writing NODE_5327_length_590_cov_50.407249:1-590 changes to pilon.changes [pilon] Writing updated NODE_5327_length_590_cov_50.407249_pilon to pilon.fasta [pilon] Writing NODE_5328_length_590_cov_27.155650:1-590 changes to pilon.changes [pilon] Writing updated NODE_5328_length_590_cov_27.155650_pilon to pilon.fasta [pilon] Writing NODE_5329_length_590_cov_25.597015:1-590 changes to pilon.changes [pilon] Writing updated NODE_5329_length_590_cov_25.597015_pilon to pilon.fasta [pilon] Writing NODE_5330_length_590_cov_25.488273:1-590 changes to pilon.changes [pilon] Writing updated NODE_5330_length_590_cov_25.488273_pilon to pilon.fasta [pilon] Writing NODE_5331_length_590_cov_23.678038:1-590 changes to pilon.changes [pilon] Writing updated NODE_5331_length_590_cov_23.678038_pilon to pilon.fasta [pilon] Writing NODE_5332_length_590_cov_20.313433:1-590 changes to pilon.changes [pilon] Writing updated NODE_5332_length_590_cov_20.313433_pilon to pilon.fasta [pilon] Writing NODE_5333_length_590_cov_15.985075:1-590 changes to pilon.changes [pilon] Writing updated NODE_5333_length_590_cov_15.985075_pilon to pilon.fasta [pilon] Writing NODE_5334_length_590_cov_14.938166:1-590 changes to pilon.changes [pilon] Writing updated NODE_5334_length_590_cov_14.938166_pilon to pilon.fasta [pilon] Writing NODE_5335_length_590_cov_8.230277:1-590 changes to pilon.changes [pilon] Writing updated NODE_5335_length_590_cov_8.230277_pilon to pilon.fasta [pilon] Writing NODE_5336_length_590_cov_7.537313:1-590 changes to pilon.changes [pilon] Writing updated NODE_5336_length_590_cov_7.537313_pilon to pilon.fasta [pilon] Writing NODE_5337_length_590_cov_4.620469:1-590 changes to pilon.changes [pilon] Writing updated NODE_5337_length_590_cov_4.620469_pilon to pilon.fasta [pilon] Writing NODE_5338_length_590_cov_3.279318:1-590 changes to pilon.changes [pilon] Writing updated NODE_5338_length_590_cov_3.279318_pilon to pilon.fasta [pilon] Writing NODE_5339_length_590_cov_2.931770:1-590 changes to pilon.changes [pilon] Writing updated NODE_5339_length_590_cov_2.931770_pilon to pilon.fasta [pilon] Writing NODE_5340_length_589_cov_33.694444:1-589 changes to pilon.changes [pilon] Writing updated NODE_5340_length_589_cov_33.694444_pilon to pilon.fasta [pilon] Writing NODE_5341_length_589_cov_27.121795:1-589 changes to pilon.changes [pilon] Writing updated NODE_5341_length_589_cov_27.121795_pilon to pilon.fasta [pilon] Writing NODE_5342_length_589_cov_26.995726:1-589 changes to pilon.changes [pilon] Writing updated NODE_5342_length_589_cov_26.995726_pilon to pilon.fasta [pilon] Writing NODE_5343_length_589_cov_17.965812:1-589 changes to pilon.changes [pilon] Writing updated NODE_5343_length_589_cov_17.965812_pilon to pilon.fasta [pilon] Writing NODE_5344_length_589_cov_8.547009:1-589 changes to pilon.changes [pilon] Writing updated NODE_5344_length_589_cov_8.547009_pilon to pilon.fasta [pilon] Writing NODE_5345_length_589_cov_1.880342:1-589 changes to pilon.changes [pilon] Writing updated NODE_5345_length_589_cov_1.880342_pilon to pilon.fasta [pilon] Writing NODE_5346_length_589_cov_1.258547:1-589 changes to pilon.changes [pilon] Writing updated NODE_5346_length_589_cov_1.258547_pilon to pilon.fasta [pilon] Writing NODE_5347_length_588_cov_27.850107:1-588 changes to pilon.changes [pilon] Writing updated NODE_5347_length_588_cov_27.850107_pilon to pilon.fasta [pilon] Writing NODE_5348_length_588_cov_21.672377:1-588 changes to pilon.changes [pilon] Writing updated NODE_5348_length_588_cov_21.672377_pilon to pilon.fasta [pilon] Writing NODE_5349_length_588_cov_20.706638:1-588 changes to pilon.changes [pilon] Writing updated NODE_5349_length_588_cov_20.706638_pilon to pilon.fasta [pilon] Writing NODE_5350_length_588_cov_20.678801:1-588 changes to pilon.changes [pilon] Writing updated NODE_5350_length_588_cov_20.678801_pilon to pilon.fasta [pilon] Writing NODE_5351_length_588_cov_17.186296:1-588 changes to pilon.changes [pilon] Writing updated NODE_5351_length_588_cov_17.186296_pilon to pilon.fasta [pilon] Writing NODE_5352_length_588_cov_5.554604:1-588 changes to pilon.changes [pilon] Writing updated NODE_5352_length_588_cov_5.554604_pilon to pilon.fasta [pilon] Writing NODE_5353_length_588_cov_3.584582:1-588 changes to pilon.changes [pilon] Writing updated NODE_5353_length_588_cov_3.584582_pilon to pilon.fasta [pilon] Writing NODE_5354_length_588_cov_2.901499:1-588 changes to pilon.changes [pilon] Writing updated NODE_5354_length_588_cov_2.901499_pilon to pilon.fasta [pilon] Writing NODE_5355_length_588_cov_2.241970:1-588 changes to pilon.changes [pilon] Writing updated NODE_5355_length_588_cov_2.241970_pilon to pilon.fasta [pilon] Writing NODE_5356_length_588_cov_1.972163:1-588 changes to pilon.changes [pilon] Writing updated NODE_5356_length_588_cov_1.972163_pilon to pilon.fasta [pilon] Writing NODE_5357_length_588_cov_1.477516:1-588 changes to pilon.changes [pilon] Writing updated NODE_5357_length_588_cov_1.477516_pilon to pilon.fasta [pilon] Writing NODE_5358_length_588_cov_0.940043:1-588 changes to pilon.changes [pilon] Writing updated NODE_5358_length_588_cov_0.940043_pilon to pilon.fasta [pilon] Writing NODE_5359_length_587_cov_40.506438:1-587 changes to pilon.changes [pilon] Writing updated NODE_5359_length_587_cov_40.506438_pilon to pilon.fasta [pilon] Writing NODE_5360_length_587_cov_27.841202:1-587 changes to pilon.changes [pilon] Writing updated NODE_5360_length_587_cov_27.841202_pilon to pilon.fasta [pilon] Writing NODE_5361_length_587_cov_22.821888:1-587 changes to pilon.changes [pilon] Writing updated NODE_5361_length_587_cov_22.821888_pilon to pilon.fasta [pilon] Writing NODE_5362_length_587_cov_19.190987:1-587 changes to pilon.changes [pilon] Writing updated NODE_5362_length_587_cov_19.190987_pilon to pilon.fasta [pilon] Writing NODE_5363_length_587_cov_17.706009:1-587 changes to pilon.changes [pilon] Writing updated NODE_5363_length_587_cov_17.706009_pilon to pilon.fasta [pilon] Writing NODE_5364_length_587_cov_16.420601:1-587 changes to pilon.changes [pilon] Writing updated NODE_5364_length_587_cov_16.420601_pilon to pilon.fasta [pilon] Writing NODE_5365_length_587_cov_9.708155:1-587 changes to pilon.changes [pilon] Writing updated NODE_5365_length_587_cov_9.708155_pilon to pilon.fasta [pilon] Writing NODE_5366_length_587_cov_2.894850:1-587 changes to pilon.changes [pilon] Writing updated NODE_5366_length_587_cov_2.894850_pilon to pilon.fasta [pilon] Writing NODE_5367_length_587_cov_2.002146:1-587 changes to pilon.changes [pilon] Writing updated NODE_5367_length_587_cov_2.002146_pilon to pilon.fasta [pilon] Writing NODE_5368_length_587_cov_1.757511:1-587 changes to pilon.changes [pilon] Writing updated NODE_5368_length_587_cov_1.757511_pilon to pilon.fasta [pilon] Writing NODE_5369_length_587_cov_1.210300:1-587 changes to pilon.changes [pilon] Writing updated NODE_5369_length_587_cov_1.210300_pilon to pilon.fasta [pilon] Writing NODE_5370_length_587_cov_1.135193:1-587 changes to pilon.changes [pilon] Writing updated NODE_5370_length_587_cov_1.135193_pilon to pilon.fasta [pilon] Writing NODE_5371_length_586_cov_20.886022:1-586 changes to pilon.changes [pilon] Writing updated NODE_5371_length_586_cov_20.886022_pilon to pilon.fasta [pilon] Writing NODE_5372_length_586_cov_16.135484:1-586 changes to pilon.changes [pilon] Writing updated NODE_5372_length_586_cov_16.135484_pilon to pilon.fasta [pilon] Writing NODE_5373_length_586_cov_15.447312:1-586 changes to pilon.changes [pilon] Writing updated NODE_5373_length_586_cov_15.447312_pilon to pilon.fasta [pilon] Writing NODE_5374_length_586_cov_13.415054:1-586 changes to pilon.changes [pilon] Writing updated NODE_5374_length_586_cov_13.415054_pilon to pilon.fasta [pilon] Writing NODE_5375_length_586_cov_7.881720:1-586 changes to pilon.changes [pilon] Writing updated NODE_5375_length_586_cov_7.881720_pilon to pilon.fasta [pilon] Writing NODE_5376_length_586_cov_2.589247:1-586 changes to pilon.changes [pilon] Writing updated NODE_5376_length_586_cov_2.589247_pilon to pilon.fasta [pilon] Writing NODE_5377_length_586_cov_2.225806:1-586 changes to pilon.changes [pilon] Writing updated NODE_5377_length_586_cov_2.225806_pilon to pilon.fasta [pilon] Writing NODE_5378_length_586_cov_1.939785:1-586 changes to pilon.changes [pilon] Writing updated NODE_5378_length_586_cov_1.939785_pilon to pilon.fasta [pilon] Writing NODE_5379_length_586_cov_1.554839:1-586 changes to pilon.changes [pilon] Writing updated NODE_5379_length_586_cov_1.554839_pilon to pilon.fasta [pilon] Writing NODE_5380_length_586_cov_0.838710:1-586 changes to pilon.changes [pilon] Writing updated NODE_5380_length_586_cov_0.838710_pilon to pilon.fasta [pilon] Writing NODE_5381_length_586_cov_0.722581:1-586 changes to pilon.changes [pilon] Writing updated NODE_5381_length_586_cov_0.722581_pilon to pilon.fasta [pilon] Writing NODE_5382_length_585_cov_38.053879:1-585 changes to pilon.changes [pilon] Writing updated NODE_5382_length_585_cov_38.053879_pilon to pilon.fasta [pilon] Writing NODE_5383_length_585_cov_29.204741:1-585 changes to pilon.changes [pilon] Writing updated NODE_5383_length_585_cov_29.204741_pilon to pilon.fasta [pilon] Writing NODE_5384_length_585_cov_25.028017:1-585 changes to pilon.changes [pilon] Writing updated NODE_5384_length_585_cov_25.028017_pilon to pilon.fasta [pilon] Writing NODE_5385_length_585_cov_24.842672:1-585 changes to pilon.changes [pilon] Writing updated NODE_5385_length_585_cov_24.842672_pilon to pilon.fasta [pilon] Writing NODE_5386_length_585_cov_24.021552:1-585 changes to pilon.changes [pilon] Writing updated NODE_5386_length_585_cov_24.021552_pilon to pilon.fasta [pilon] Writing NODE_5387_length_585_cov_21.172414:1-585 changes to pilon.changes [pilon] Writing updated NODE_5387_length_585_cov_21.172414_pilon to pilon.fasta [pilon] Writing NODE_5388_length_585_cov_7.831897:1-585 changes to pilon.changes [pilon] Writing updated NODE_5388_length_585_cov_7.831897_pilon to pilon.fasta [pilon] Writing NODE_5389_length_585_cov_4.441810:1-585 changes to pilon.changes [pilon] Writing updated NODE_5389_length_585_cov_4.441810_pilon to pilon.fasta [pilon] Writing NODE_5390_length_585_cov_2.187500:1-585 changes to pilon.changes [pilon] Writing updated NODE_5390_length_585_cov_2.187500_pilon to pilon.fasta [pilon] Writing NODE_5391_length_585_cov_2.088362:1-585 changes to pilon.changes [pilon] Writing updated NODE_5391_length_585_cov_2.088362_pilon to pilon.fasta [pilon] Writing NODE_5392_length_585_cov_1.064655:1-585 changes to pilon.changes [pilon] Writing updated NODE_5392_length_585_cov_1.064655_pilon to pilon.fasta [pilon] Writing NODE_5393_length_585_cov_0.883621:1-585 changes to pilon.changes [pilon] Writing updated NODE_5393_length_585_cov_0.883621_pilon to pilon.fasta [pilon] Writing NODE_5394_length_584_cov_30.403888:1-584 changes to pilon.changes [pilon] Writing updated NODE_5394_length_584_cov_30.403888_pilon to pilon.fasta [pilon] Writing NODE_5395_length_584_cov_26.062635:1-584 changes to pilon.changes [pilon] Writing updated NODE_5395_length_584_cov_26.062635_pilon to pilon.fasta [pilon] Writing NODE_5396_length_584_cov_26.049676:1-584 changes to pilon.changes [pilon] Writing updated NODE_5396_length_584_cov_26.049676_pilon to pilon.fasta [pilon] Writing NODE_5397_length_584_cov_23.928726:1-584 changes to pilon.changes [pilon] Writing updated NODE_5397_length_584_cov_23.928726_pilon to pilon.fasta [pilon] Writing NODE_5398_length_584_cov_18.647948:1-584 changes to pilon.changes [pilon] Writing updated NODE_5398_length_584_cov_18.647948_pilon to pilon.fasta [pilon] Writing NODE_5399_length_584_cov_18.114471:1-584 changes to pilon.changes [pilon] Writing updated NODE_5399_length_584_cov_18.114471_pilon to pilon.fasta [pilon] Writing NODE_5400_length_584_cov_16.097192:1-584 changes to pilon.changes [pilon] Writing updated NODE_5400_length_584_cov_16.097192_pilon to pilon.fasta [pilon] Writing NODE_5401_length_584_cov_13.470842:1-584 changes to pilon.changes [pilon] Writing updated NODE_5401_length_584_cov_13.470842_pilon to pilon.fasta [pilon] Writing NODE_5402_length_584_cov_12.552916:1-584 changes to pilon.changes [pilon] Writing updated NODE_5402_length_584_cov_12.552916_pilon to pilon.fasta [pilon] Writing NODE_5403_length_584_cov_4.732181:1-584 changes to pilon.changes [pilon] Writing updated NODE_5403_length_584_cov_4.732181_pilon to pilon.fasta [pilon] Writing NODE_5404_length_584_cov_2.362851:1-584 changes to pilon.changes [pilon] Writing updated NODE_5404_length_584_cov_2.362851_pilon to pilon.fasta [pilon] Writing NODE_5405_length_584_cov_1.593952:1-584 changes to pilon.changes [pilon] Writing updated NODE_5405_length_584_cov_1.593952_pilon to pilon.fasta [pilon] Writing NODE_5406_length_584_cov_1.129590:1-584 changes to pilon.changes [pilon] Writing updated NODE_5406_length_584_cov_1.129590_pilon to pilon.fasta [pilon] Writing NODE_5407_length_584_cov_0.976242:1-584 changes to pilon.changes [pilon] Writing updated NODE_5407_length_584_cov_0.976242_pilon to pilon.fasta [pilon] Writing NODE_5408_length_583_cov_14.577922:1-583 changes to pilon.changes [pilon] Writing updated NODE_5408_length_583_cov_14.577922_pilon to pilon.fasta [pilon] Writing NODE_5409_length_583_cov_13.694805:1-583 changes to pilon.changes [pilon] Writing updated NODE_5409_length_583_cov_13.694805_pilon to pilon.fasta [pilon] Writing NODE_5410_length_583_cov_12.831169:1-583 changes to pilon.changes [pilon] Writing updated NODE_5410_length_583_cov_12.831169_pilon to pilon.fasta [pilon] Writing NODE_5411_length_583_cov_12.783550:1-583 changes to pilon.changes [pilon] Writing updated NODE_5411_length_583_cov_12.783550_pilon to pilon.fasta [pilon] Writing NODE_5412_length_583_cov_8.523810:1-583 changes to pilon.changes [pilon] Writing updated NODE_5412_length_583_cov_8.523810_pilon to pilon.fasta [pilon] Writing NODE_5413_length_583_cov_8.435065:1-583 changes to pilon.changes [pilon] Writing updated NODE_5413_length_583_cov_8.435065_pilon to pilon.fasta [pilon] Writing NODE_5414_length_583_cov_2.861472:1-583 changes to pilon.changes [pilon] Writing updated NODE_5414_length_583_cov_2.861472_pilon to pilon.fasta [pilon] Writing NODE_5415_length_583_cov_1.705628:1-583 changes to pilon.changes [pilon] Writing updated NODE_5415_length_583_cov_1.705628_pilon to pilon.fasta [pilon] Writing NODE_5416_length_583_cov_1.495671:1-583 changes to pilon.changes [pilon] Writing updated NODE_5416_length_583_cov_1.495671_pilon to pilon.fasta [pilon] Writing NODE_5417_length_582_cov_77.019523:1-582 changes to pilon.changes [pilon] Writing updated NODE_5417_length_582_cov_77.019523_pilon to pilon.fasta [pilon] Writing NODE_5418_length_582_cov_59.381779:1-582 changes to pilon.changes [pilon] Writing updated NODE_5418_length_582_cov_59.381779_pilon to pilon.fasta [pilon] Writing NODE_5419_length_582_cov_33.245119:1-582 changes to pilon.changes [pilon] Writing updated NODE_5419_length_582_cov_33.245119_pilon to pilon.fasta [pilon] Writing NODE_5420_length_582_cov_31.069414:1-582 changes to pilon.changes [pilon] Writing updated NODE_5420_length_582_cov_31.069414_pilon to pilon.fasta [pilon] Writing NODE_5421_length_582_cov_30.429501:1-582 changes to pilon.changes [pilon] Writing updated NODE_5421_length_582_cov_30.429501_pilon to pilon.fasta [pilon] Writing NODE_5422_length_582_cov_27.824295:1-582 changes to pilon.changes [pilon] Writing updated NODE_5422_length_582_cov_27.824295_pilon to pilon.fasta [pilon] Writing NODE_5423_length_582_cov_27.036876:1-582 changes to pilon.changes [pilon] Writing updated NODE_5423_length_582_cov_27.036876_pilon to pilon.fasta [pilon] Writing NODE_5424_length_582_cov_23.772234:1-582 changes to pilon.changes [pilon] Writing updated NODE_5424_length_582_cov_23.772234_pilon to pilon.fasta [pilon] Writing NODE_5425_length_582_cov_19.537961:1-582 changes to pilon.changes [pilon] Writing updated NODE_5425_length_582_cov_19.537961_pilon to pilon.fasta [pilon] Writing NODE_5426_length_582_cov_19.323210:1-582 changes to pilon.changes [pilon] Writing updated NODE_5426_length_582_cov_19.323210_pilon to pilon.fasta [pilon] Writing NODE_5427_length_582_cov_17.173536:1-582 changes to pilon.changes [pilon] Writing updated NODE_5427_length_582_cov_17.173536_pilon to pilon.fasta [pilon] Writing NODE_5428_length_582_cov_16.700651:1-582 changes to pilon.changes [pilon] Writing updated NODE_5428_length_582_cov_16.700651_pilon to pilon.fasta [pilon] Writing NODE_5429_length_582_cov_15.832972:1-582 changes to pilon.changes [pilon] Writing updated NODE_5429_length_582_cov_15.832972_pilon to pilon.fasta [pilon] Writing NODE_5430_length_582_cov_12.798265:1-582 changes to pilon.changes [pilon] Writing updated NODE_5430_length_582_cov_12.798265_pilon to pilon.fasta [pilon] Writing NODE_5431_length_582_cov_11.327549:1-582 changes to pilon.changes [pilon] Writing updated NODE_5431_length_582_cov_11.327549_pilon to pilon.fasta [pilon] Writing NODE_5432_length_582_cov_2.323210:1-582 changes to pilon.changes [pilon] Writing updated NODE_5432_length_582_cov_2.323210_pilon to pilon.fasta [pilon] Writing NODE_5433_length_582_cov_1.772234:1-582 changes to pilon.changes [pilon] Writing updated NODE_5433_length_582_cov_1.772234_pilon to pilon.fasta [pilon] Writing NODE_5434_length_582_cov_1.616052:1-582 changes to pilon.changes [pilon] Writing updated NODE_5434_length_582_cov_1.616052_pilon to pilon.fasta [pilon] Writing NODE_5435_length_582_cov_1.550976:1-582 changes to pilon.changes [pilon] Writing updated NODE_5435_length_582_cov_1.550976_pilon to pilon.fasta [pilon] Writing NODE_5436_length_582_cov_0.861171:1-582 changes to pilon.changes [pilon] Writing updated NODE_5436_length_582_cov_0.861171_pilon to pilon.fasta [pilon] Writing NODE_5437_length_581_cov_29.039130:1-581 changes to pilon.changes [pilon] Writing updated NODE_5437_length_581_cov_29.039130_pilon to pilon.fasta [pilon] Writing NODE_5438_length_581_cov_22.704348:1-581 changes to pilon.changes [pilon] Writing updated NODE_5438_length_581_cov_22.704348_pilon to pilon.fasta [pilon] Writing NODE_5439_length_581_cov_15.167391:1-581 changes to pilon.changes [pilon] Writing updated NODE_5439_length_581_cov_15.167391_pilon to pilon.fasta [pilon] Writing NODE_5440_length_581_cov_13.978261:1-581 changes to pilon.changes [pilon] Writing updated NODE_5440_length_581_cov_13.978261_pilon to pilon.fasta [pilon] Writing NODE_5441_length_581_cov_13.102174:1-581 changes to pilon.changes [pilon] Writing updated NODE_5441_length_581_cov_13.102174_pilon to pilon.fasta [pilon] Writing NODE_5442_length_581_cov_9.669565:1-581 changes to pilon.changes [pilon] Writing updated NODE_5442_length_581_cov_9.669565_pilon to pilon.fasta [pilon] Writing NODE_5443_length_581_cov_5.771739:1-581 changes to pilon.changes [pilon] Writing updated NODE_5443_length_581_cov_5.771739_pilon to pilon.fasta [pilon] Writing NODE_5444_length_581_cov_4.128261:1-581 changes to pilon.changes [pilon] Writing updated NODE_5444_length_581_cov_4.128261_pilon to pilon.fasta [pilon] Writing NODE_5445_length_581_cov_2.476087:1-581 changes to pilon.changes [pilon] Writing updated NODE_5445_length_581_cov_2.476087_pilon to pilon.fasta [pilon] Writing NODE_5446_length_581_cov_1.263043:1-581 changes to pilon.changes [pilon] Writing updated NODE_5446_length_581_cov_1.263043_pilon to pilon.fasta [pilon] Writing NODE_5447_length_581_cov_1.023913:1-581 changes to pilon.changes [pilon] Writing updated NODE_5447_length_581_cov_1.023913_pilon to pilon.fasta [pilon] Writing NODE_5448_length_581_cov_0.508696:1-581 changes to pilon.changes [pilon] Writing updated NODE_5448_length_581_cov_0.508696_pilon to pilon.fasta [pilon] Writing NODE_5449_length_580_cov_51.211329:1-580 changes to pilon.changes [pilon] Writing updated NODE_5449_length_580_cov_51.211329_pilon to pilon.fasta [pilon] Writing NODE_5450_length_580_cov_50.657952:1-580 changes to pilon.changes [pilon] Writing updated NODE_5450_length_580_cov_50.657952_pilon to pilon.fasta [pilon] Writing NODE_5451_length_580_cov_30.206972:1-580 changes to pilon.changes [pilon] Writing updated NODE_5451_length_580_cov_30.206972_pilon to pilon.fasta [pilon] Writing NODE_5452_length_580_cov_27.387800:1-580 changes to pilon.changes [pilon] Writing updated NODE_5452_length_580_cov_27.387800_pilon to pilon.fasta [pilon] Writing NODE_5453_length_580_cov_26.867102:1-580 changes to pilon.changes [pilon] Writing updated NODE_5453_length_580_cov_26.867102_pilon to pilon.fasta [pilon] Writing NODE_5454_length_580_cov_26.220044:1-580 changes to pilon.changes [pilon] Writing updated NODE_5454_length_580_cov_26.220044_pilon to pilon.fasta [pilon] Writing NODE_5455_length_580_cov_23.845316:1-580 changes to pilon.changes [pilon] Writing updated NODE_5455_length_580_cov_23.845316_pilon to pilon.fasta [pilon] Writing NODE_5456_length_580_cov_23.751634:1-580 changes to pilon.changes [pilon] Writing updated NODE_5456_length_580_cov_23.751634_pilon to pilon.fasta [pilon] Writing NODE_5457_length_580_cov_22.531590:1-580 changes to pilon.changes [pilon] Writing updated NODE_5457_length_580_cov_22.531590_pilon to pilon.fasta [pilon] Writing NODE_5458_length_580_cov_15.379085:1-580 changes to pilon.changes [pilon] Writing updated NODE_5458_length_580_cov_15.379085_pilon to pilon.fasta [pilon] Writing NODE_5459_length_580_cov_10.054466:1-580 changes to pilon.changes [pilon] Writing updated NODE_5459_length_580_cov_10.054466_pilon to pilon.fasta [pilon] Writing NODE_5460_length_580_cov_8.370370:1-580 changes to pilon.changes [pilon] Writing updated NODE_5460_length_580_cov_8.370370_pilon to pilon.fasta [pilon] Writing NODE_5461_length_580_cov_1.965142:1-580 changes to pilon.changes [pilon] Writing updated NODE_5461_length_580_cov_1.965142_pilon to pilon.fasta [pilon] Writing NODE_5462_length_580_cov_1.383442:1-580 changes to pilon.changes [pilon] Writing updated NODE_5462_length_580_cov_1.383442_pilon to pilon.fasta [pilon] Writing NODE_5463_length_580_cov_1.270153:1-580 changes to pilon.changes [pilon] Writing updated NODE_5463_length_580_cov_1.270153_pilon to pilon.fasta [pilon] Writing NODE_5464_length_580_cov_0.797386:1-580 changes to pilon.changes [pilon] Writing updated NODE_5464_length_580_cov_0.797386_pilon to pilon.fasta [pilon] Writing NODE_5465_length_579_cov_57.574236:1-579 changes to pilon.changes [pilon] Writing updated NODE_5465_length_579_cov_57.574236_pilon to pilon.fasta [pilon] Writing NODE_5466_length_579_cov_51.377729:1-579 changes to pilon.changes [pilon] Writing updated NODE_5466_length_579_cov_51.377729_pilon to pilon.fasta [pilon] Writing NODE_5467_length_579_cov_47.262009:1-579 changes to pilon.changes [pilon] Writing updated NODE_5467_length_579_cov_47.262009_pilon to pilon.fasta [pilon] Writing NODE_5468_length_579_cov_27.325328:1-579 changes to pilon.changes [pilon] Writing updated NODE_5468_length_579_cov_27.325328_pilon to pilon.fasta [pilon] Writing NODE_5469_length_579_cov_24.932314:1-579 changes to pilon.changes [pilon] Writing updated NODE_5469_length_579_cov_24.932314_pilon to pilon.fasta [pilon] Writing NODE_5470_length_579_cov_24.694323:1-579 changes to pilon.changes [pilon] Writing updated NODE_5470_length_579_cov_24.694323_pilon to pilon.fasta [pilon] Writing NODE_5471_length_579_cov_20.048035:1-579 changes to pilon.changes [pilon] Writing updated NODE_5471_length_579_cov_20.048035_pilon to pilon.fasta [pilon] Writing NODE_5472_length_579_cov_19.292576:1-579 changes to pilon.changes [pilon] Writing updated NODE_5472_length_579_cov_19.292576_pilon to pilon.fasta [pilon] Writing NODE_5473_length_579_cov_19.231441:1-579 changes to pilon.changes [pilon] Writing updated NODE_5473_length_579_cov_19.231441_pilon to pilon.fasta [pilon] Writing NODE_5474_length_579_cov_17.530568:1-579 changes to pilon.changes [pilon] Writing updated NODE_5474_length_579_cov_17.530568_pilon to pilon.fasta [pilon] Writing NODE_5475_length_579_cov_17.181223:1-579 changes to pilon.changes [pilon] Writing updated NODE_5475_length_579_cov_17.181223_pilon to pilon.fasta [pilon] Writing NODE_5476_length_579_cov_14.056769:1-579 changes to pilon.changes [pilon] Writing updated NODE_5476_length_579_cov_14.056769_pilon to pilon.fasta [pilon] Writing NODE_5477_length_579_cov_12.288210:1-579 changes to pilon.changes [pilon] Writing updated NODE_5477_length_579_cov_12.288210_pilon to pilon.fasta [pilon] Writing NODE_5478_length_579_cov_8.172489:1-579 changes to pilon.changes [pilon] Writing updated NODE_5478_length_579_cov_8.172489_pilon to pilon.fasta [pilon] Writing NODE_5479_length_579_cov_7.886463:1-579 changes to pilon.changes [pilon] Writing updated NODE_5479_length_579_cov_7.886463_pilon to pilon.fasta [pilon] Writing NODE_5480_length_579_cov_7.668122:1-579 changes to pilon.changes [pilon] Writing updated NODE_5480_length_579_cov_7.668122_pilon to pilon.fasta [pilon] Writing NODE_5481_length_579_cov_7.312227:1-579 changes to pilon.changes [pilon] Writing updated NODE_5481_length_579_cov_7.312227_pilon to pilon.fasta [pilon] Writing NODE_5482_length_579_cov_5.303493:1-579 changes to pilon.changes [pilon] Writing updated NODE_5482_length_579_cov_5.303493_pilon to pilon.fasta [pilon] Writing NODE_5483_length_579_cov_1.227074:1-579 changes to pilon.changes [pilon] Writing updated NODE_5483_length_579_cov_1.227074_pilon to pilon.fasta [pilon] Writing NODE_5484_length_579_cov_1.213974:1-579 changes to pilon.changes [pilon] Writing updated NODE_5484_length_579_cov_1.213974_pilon to pilon.fasta [pilon] Writing NODE_5485_length_579_cov_0.591703:1-579 changes to pilon.changes [pilon] Writing updated NODE_5485_length_579_cov_0.591703_pilon to pilon.fasta [pilon] Writing NODE_5486_length_579_cov_0.497817:1-579 changes to pilon.changes [pilon] Writing updated NODE_5486_length_579_cov_0.497817_pilon to pilon.fasta [pilon] Writing NODE_5487_length_578_cov_40.901532:1-578 changes to pilon.changes [pilon] Writing updated NODE_5487_length_578_cov_40.901532_pilon to pilon.fasta [pilon] Writing NODE_5488_length_578_cov_36.183807:1-578 changes to pilon.changes [pilon] Writing updated NODE_5488_length_578_cov_36.183807_pilon to pilon.fasta [pilon] Writing NODE_5489_length_578_cov_27.253829:1-578 changes to pilon.changes [pilon] Writing updated NODE_5489_length_578_cov_27.253829_pilon to pilon.fasta [pilon] Writing NODE_5490_length_578_cov_21.065646:1-578 changes to pilon.changes [pilon] Writing updated NODE_5490_length_578_cov_21.065646_pilon to pilon.fasta [pilon] Writing NODE_5491_length_578_cov_18.431072:1-578 changes to pilon.changes [pilon] Writing updated NODE_5491_length_578_cov_18.431072_pilon to pilon.fasta [pilon] Writing NODE_5492_length_578_cov_15.207877:1-578 changes to pilon.changes [pilon] Writing updated NODE_5492_length_578_cov_15.207877_pilon to pilon.fasta [pilon] Writing NODE_5493_length_578_cov_10.923414:1-578 changes to pilon.changes [pilon] Writing updated NODE_5493_length_578_cov_10.923414_pilon to pilon.fasta [pilon] Writing NODE_5494_length_578_cov_3.288840:1-578 changes to pilon.changes [pilon] Writing updated NODE_5494_length_578_cov_3.288840_pilon to pilon.fasta [pilon] Writing NODE_5495_length_578_cov_2.973742:1-578 changes to pilon.changes [pilon] Writing updated NODE_5495_length_578_cov_2.973742_pilon to pilon.fasta [pilon] Writing NODE_5496_length_578_cov_1.529540:1-578 changes to pilon.changes [pilon] Writing updated NODE_5496_length_578_cov_1.529540_pilon to pilon.fasta [pilon] Writing NODE_5497_length_577_cov_68.245614:1-577 changes to pilon.changes [pilon] Writing updated NODE_5497_length_577_cov_68.245614_pilon to pilon.fasta [pilon] Writing NODE_5498_length_577_cov_11.342105:1-577 changes to pilon.changes [pilon] Writing updated NODE_5498_length_577_cov_11.342105_pilon to pilon.fasta [pilon] Writing NODE_5499_length_577_cov_7.932018:1-577 changes to pilon.changes [pilon] Writing updated NODE_5499_length_577_cov_7.932018_pilon to pilon.fasta [pilon] Writing NODE_5500_length_577_cov_5.267544:1-577 changes to pilon.changes [pilon] Writing updated NODE_5500_length_577_cov_5.267544_pilon to pilon.fasta [pilon] Writing NODE_5501_length_577_cov_4.739035:1-577 changes to pilon.changes [pilon] Writing updated NODE_5501_length_577_cov_4.739035_pilon to pilon.fasta [pilon] Writing NODE_5502_length_577_cov_3.054825:1-577 changes to pilon.changes [pilon] Writing updated NODE_5502_length_577_cov_3.054825_pilon to pilon.fasta [pilon] Writing NODE_5503_length_577_cov_2.660088:1-577 changes to pilon.changes [pilon] Writing updated NODE_5503_length_577_cov_2.660088_pilon to pilon.fasta [pilon] Writing NODE_5504_length_577_cov_1.587719:1-577 changes to pilon.changes [pilon] Writing updated NODE_5504_length_577_cov_1.587719_pilon to pilon.fasta [pilon] Writing NODE_5505_length_577_cov_1.046053:1-577 changes to pilon.changes [pilon] Writing updated NODE_5505_length_577_cov_1.046053_pilon to pilon.fasta [pilon] Writing NODE_5506_length_577_cov_0.828947:1-577 changes to pilon.changes [pilon] Writing updated NODE_5506_length_577_cov_0.828947_pilon to pilon.fasta [pilon] Writing NODE_5507_length_576_cov_38.015385:1-576 changes to pilon.changes [pilon] Writing updated NODE_5507_length_576_cov_38.015385_pilon to pilon.fasta [pilon] Writing NODE_5508_length_576_cov_28.821978:1-576 changes to pilon.changes [pilon] Writing updated NODE_5508_length_576_cov_28.821978_pilon to pilon.fasta [pilon] Writing NODE_5509_length_576_cov_26.817582:1-576 changes to pilon.changes [pilon] Writing updated NODE_5509_length_576_cov_26.817582_pilon to pilon.fasta [pilon] Writing NODE_5510_length_576_cov_18.562637:1-576 changes to pilon.changes [pilon] Writing updated NODE_5510_length_576_cov_18.562637_pilon to pilon.fasta [pilon] Writing NODE_5511_length_576_cov_17.597802:1-576 changes to pilon.changes [pilon] Writing updated NODE_5511_length_576_cov_17.597802_pilon to pilon.fasta [pilon] Writing NODE_5512_length_576_cov_16.039560:1-576 changes to pilon.changes [pilon] Writing updated NODE_5512_length_576_cov_16.039560_pilon to pilon.fasta [pilon] Writing NODE_5513_length_576_cov_14.360440:1-576 changes to pilon.changes [pilon] Writing updated NODE_5513_length_576_cov_14.360440_pilon to pilon.fasta [pilon] Writing NODE_5514_length_576_cov_13.841758:1-576 changes to pilon.changes [pilon] Writing updated NODE_5514_length_576_cov_13.841758_pilon to pilon.fasta [pilon] Writing NODE_5515_length_576_cov_12.874725:1-576 changes to pilon.changes [pilon] Writing updated NODE_5515_length_576_cov_12.874725_pilon to pilon.fasta [pilon] Writing NODE_5516_length_576_cov_12.789011:1-576 changes to pilon.changes [pilon] Writing updated NODE_5516_length_576_cov_12.789011_pilon to pilon.fasta [pilon] Writing NODE_5517_length_576_cov_12.371429:1-576 changes to pilon.changes [pilon] Writing updated NODE_5517_length_576_cov_12.371429_pilon to pilon.fasta [pilon] Writing NODE_5518_length_576_cov_8.701099:1-576 changes to pilon.changes [pilon] Writing updated NODE_5518_length_576_cov_8.701099_pilon to pilon.fasta [pilon] Writing NODE_5519_length_576_cov_7.136264:1-576 changes to pilon.changes [pilon] Writing updated NODE_5519_length_576_cov_7.136264_pilon to pilon.fasta [pilon] Writing NODE_5520_length_576_cov_3.408791:1-576 changes to pilon.changes [pilon] Writing updated NODE_5520_length_576_cov_3.408791_pilon to pilon.fasta [pilon] Writing NODE_5521_length_576_cov_1.573626:1-576 changes to pilon.changes [pilon] Writing updated NODE_5521_length_576_cov_1.573626_pilon to pilon.fasta [pilon] Writing NODE_5522_length_576_cov_1.389011:1-576 changes to pilon.changes [pilon] Writing updated NODE_5522_length_576_cov_1.389011_pilon to pilon.fasta [pilon] Writing NODE_5523_length_575_cov_38.610132:1-575 changes to pilon.changes [pilon] Writing updated NODE_5523_length_575_cov_38.610132_pilon to pilon.fasta [pilon] Writing NODE_5524_length_575_cov_37.372247:1-575 changes to pilon.changes [pilon] Writing updated NODE_5524_length_575_cov_37.372247_pilon to pilon.fasta [pilon] Writing NODE_5525_length_575_cov_32.394273:1-575 changes to pilon.changes [pilon] Writing updated NODE_5525_length_575_cov_32.394273_pilon to pilon.fasta [pilon] Writing NODE_5526_length_575_cov_25.138767:1-575 changes to pilon.changes [pilon] Writing updated NODE_5526_length_575_cov_25.138767_pilon to pilon.fasta [pilon] Writing NODE_5527_length_575_cov_21.270925:1-575 changes to pilon.changes [pilon] Writing updated NODE_5527_length_575_cov_21.270925_pilon to pilon.fasta [pilon] Writing NODE_5528_length_575_cov_16.035242:1-575 changes to pilon.changes [pilon] Writing updated NODE_5528_length_575_cov_16.035242_pilon to pilon.fasta [pilon] Writing NODE_5529_length_575_cov_15.876652:1-575 changes to pilon.changes [pilon] Writing updated NODE_5529_length_575_cov_15.876652_pilon to pilon.fasta [pilon] Writing NODE_5530_length_575_cov_15.085903:1-575 changes to pilon.changes [pilon] Writing updated NODE_5530_length_575_cov_15.085903_pilon to pilon.fasta [pilon] Writing NODE_5531_length_575_cov_14.889868:1-575 changes to pilon.changes [pilon] Writing updated NODE_5531_length_575_cov_14.889868_pilon to pilon.fasta [pilon] Writing NODE_5532_length_575_cov_13.026432:1-575 changes to pilon.changes [pilon] Writing updated NODE_5532_length_575_cov_13.026432_pilon to pilon.fasta [pilon] Writing NODE_5533_length_575_cov_10.962555:1-575 changes to pilon.changes [pilon] Writing updated NODE_5533_length_575_cov_10.962555_pilon to pilon.fasta [pilon] Writing NODE_5534_length_575_cov_8.411894:1-575 changes to pilon.changes [pilon] Writing updated NODE_5534_length_575_cov_8.411894_pilon to pilon.fasta [pilon] Writing NODE_5535_length_575_cov_4.345815:1-575 changes to pilon.changes [pilon] Writing updated NODE_5535_length_575_cov_4.345815_pilon to pilon.fasta [pilon] Writing NODE_5536_length_575_cov_2.207048:1-575 changes to pilon.changes [pilon] Writing updated NODE_5536_length_575_cov_2.207048_pilon to pilon.fasta [pilon] Writing NODE_5537_length_575_cov_1.162996:1-575 changes to pilon.changes [pilon] Writing updated NODE_5537_length_575_cov_1.162996_pilon to pilon.fasta [pilon] Writing NODE_5538_length_574_cov_60.470199:1-574 changes to pilon.changes [pilon] Writing updated NODE_5538_length_574_cov_60.470199_pilon to pilon.fasta [pilon] Writing NODE_5539_length_574_cov_58.825607:1-574 changes to pilon.changes [pilon] Writing updated NODE_5539_length_574_cov_58.825607_pilon to pilon.fasta [pilon] Writing NODE_5540_length_574_cov_24.428256:1-574 changes to pilon.changes [pilon] Writing updated NODE_5540_length_574_cov_24.428256_pilon to pilon.fasta [pilon] Writing NODE_5541_length_574_cov_20.593819:1-574 changes to pilon.changes [pilon] Writing updated NODE_5541_length_574_cov_20.593819_pilon to pilon.fasta [pilon] Writing NODE_5542_length_574_cov_18.743929:1-574 changes to pilon.changes [pilon] Writing updated NODE_5542_length_574_cov_18.743929_pilon to pilon.fasta [pilon] Writing NODE_5543_length_574_cov_17.898455:1-574 changes to pilon.changes [pilon] Writing updated NODE_5543_length_574_cov_17.898455_pilon to pilon.fasta [pilon] Writing NODE_5544_length_574_cov_4.313466:1-574 changes to pilon.changes [pilon] Writing updated NODE_5544_length_574_cov_4.313466_pilon to pilon.fasta [pilon] Writing NODE_5545_length_574_cov_4.165563:1-574 changes to pilon.changes [pilon] Writing updated NODE_5545_length_574_cov_4.165563_pilon to pilon.fasta [pilon] Writing NODE_5546_length_574_cov_2.984547:1-574 changes to pilon.changes [pilon] Writing updated NODE_5546_length_574_cov_2.984547_pilon to pilon.fasta [pilon] Writing NODE_5547_length_574_cov_2.958057:1-574 changes to pilon.changes [pilon] Writing updated NODE_5547_length_574_cov_2.958057_pilon to pilon.fasta [pilon] Writing NODE_5548_length_574_cov_1.962472:1-574 changes to pilon.changes [pilon] Writing updated NODE_5548_length_574_cov_1.962472_pilon to pilon.fasta [pilon] Writing NODE_5549_length_574_cov_1.600442:1-574 changes to pilon.changes [pilon] Writing updated NODE_5549_length_574_cov_1.600442_pilon to pilon.fasta [pilon] Writing NODE_5550_length_574_cov_1.529801:1-574 changes to pilon.changes [pilon] Writing updated NODE_5550_length_574_cov_1.529801_pilon to pilon.fasta [pilon] Writing NODE_5551_length_574_cov_1.479029:1-574 changes to pilon.changes [pilon] Writing updated NODE_5551_length_574_cov_1.479029_pilon to pilon.fasta [pilon] Writing NODE_5552_length_574_cov_1.419426:1-574 changes to pilon.changes [pilon] Writing updated NODE_5552_length_574_cov_1.419426_pilon to pilon.fasta [pilon] Writing NODE_5553_length_574_cov_1.364238:1-574 changes to pilon.changes [pilon] Writing updated NODE_5553_length_574_cov_1.364238_pilon to pilon.fasta [pilon] Writing NODE_5554_length_574_cov_1.251656:1-574 changes to pilon.changes [pilon] Writing updated NODE_5554_length_574_cov_1.251656_pilon to pilon.fasta [pilon] Writing NODE_5555_length_574_cov_1.066225:1-574 changes to pilon.changes [pilon] Writing updated NODE_5555_length_574_cov_1.066225_pilon to pilon.fasta [pilon] Writing NODE_5556_length_574_cov_1.035320:1-574 changes to pilon.changes [pilon] Writing updated NODE_5556_length_574_cov_1.035320_pilon to pilon.fasta [pilon] Writing NODE_5557_length_573_cov_28.984513:1-573 changes to pilon.changes [pilon] Writing updated NODE_5557_length_573_cov_28.984513_pilon to pilon.fasta [pilon] Writing NODE_5558_length_573_cov_17.464602:1-573 changes to pilon.changes [pilon] Writing updated NODE_5558_length_573_cov_17.464602_pilon to pilon.fasta [pilon] Writing NODE_5559_length_573_cov_16.150442:1-573 changes to pilon.changes [pilon] Writing updated NODE_5559_length_573_cov_16.150442_pilon to pilon.fasta [pilon] Writing NODE_5560_length_573_cov_15.988938:1-573 changes to pilon.changes [pilon] Writing updated NODE_5560_length_573_cov_15.988938_pilon to pilon.fasta [pilon] Writing NODE_5561_length_573_cov_15.110619:1-573 changes to pilon.changes [pilon] Writing updated NODE_5561_length_573_cov_15.110619_pilon to pilon.fasta [pilon] Writing NODE_5562_length_573_cov_14.630531:1-573 changes to pilon.changes [pilon] Writing updated NODE_5562_length_573_cov_14.630531_pilon to pilon.fasta [pilon] Writing NODE_5563_length_573_cov_14.303097:1-573 changes to pilon.changes [pilon] Writing updated NODE_5563_length_573_cov_14.303097_pilon to pilon.fasta [pilon] Writing NODE_5564_length_573_cov_12.741150:1-573 changes to pilon.changes [pilon] Writing updated NODE_5564_length_573_cov_12.741150_pilon to pilon.fasta [pilon] Writing NODE_5565_length_573_cov_12.305310:1-573 changes to pilon.changes [pilon] Writing updated NODE_5565_length_573_cov_12.305310_pilon to pilon.fasta [pilon] Writing NODE_5566_length_573_cov_12.276549:1-573 changes to pilon.changes [pilon] Writing updated NODE_5566_length_573_cov_12.276549_pilon to pilon.fasta [pilon] Writing NODE_5567_length_573_cov_10.993363:1-573 changes to pilon.changes [pilon] Writing updated NODE_5567_length_573_cov_10.993363_pilon to pilon.fasta [pilon] Writing NODE_5568_length_573_cov_9.289823:1-573 changes to pilon.changes [pilon] Writing updated NODE_5568_length_573_cov_9.289823_pilon to pilon.fasta [pilon] Writing NODE_5569_length_573_cov_4.422566:1-573 changes to pilon.changes [pilon] Writing updated NODE_5569_length_573_cov_4.422566_pilon to pilon.fasta [pilon] Writing NODE_5570_length_573_cov_4.415929:1-573 changes to pilon.changes [pilon] Writing updated NODE_5570_length_573_cov_4.415929_pilon to pilon.fasta [pilon] Writing NODE_5571_length_573_cov_2.075221:1-573 changes to pilon.changes [pilon] Writing updated NODE_5571_length_573_cov_2.075221_pilon to pilon.fasta [pilon] Writing NODE_5572_length_573_cov_1.101770:1-573 changes to pilon.changes [pilon] Writing updated NODE_5572_length_573_cov_1.101770_pilon to pilon.fasta [pilon] Writing NODE_5573_length_573_cov_0.971239:1-573 changes to pilon.changes [pilon] Writing updated NODE_5573_length_573_cov_0.971239_pilon to pilon.fasta [pilon] Writing NODE_5574_length_573_cov_0.670354:1-573 changes to pilon.changes [pilon] Writing updated NODE_5574_length_573_cov_0.670354_pilon to pilon.fasta [pilon] Writing NODE_5575_length_572_cov_34.869180:1-572 changes to pilon.changes [pilon] Writing updated NODE_5575_length_572_cov_34.869180_pilon to pilon.fasta [pilon] Writing NODE_5576_length_572_cov_31.829268:1-572 changes to pilon.changes [pilon] Writing updated NODE_5576_length_572_cov_31.829268_pilon to pilon.fasta [pilon] Writing NODE_5577_length_572_cov_22.640798:1-572 changes to pilon.changes [pilon] Writing updated NODE_5577_length_572_cov_22.640798_pilon to pilon.fasta [pilon] Writing NODE_5578_length_572_cov_19.614191:1-572 changes to pilon.changes [pilon] Writing updated NODE_5578_length_572_cov_19.614191_pilon to pilon.fasta [pilon] Writing NODE_5579_length_572_cov_18.527716:1-572 changes to pilon.changes [pilon] Writing updated NODE_5579_length_572_cov_18.527716_pilon to pilon.fasta [pilon] Writing NODE_5580_length_572_cov_17.667406:1-572 changes to pilon.changes [pilon] Writing updated NODE_5580_length_572_cov_17.667406_pilon to pilon.fasta [pilon] Writing NODE_5581_length_572_cov_10.753880:1-572 changes to pilon.changes [pilon] Writing updated NODE_5581_length_572_cov_10.753880_pilon to pilon.fasta [pilon] Writing NODE_5582_length_572_cov_6.543237:1-572 changes to pilon.changes [pilon] Writing updated NODE_5582_length_572_cov_6.543237_pilon to pilon.fasta [pilon] Writing NODE_5583_length_572_cov_2.332594:1-572 changes to pilon.changes [pilon] Writing updated NODE_5583_length_572_cov_2.332594_pilon to pilon.fasta [pilon] Writing NODE_5584_length_572_cov_1.694013:1-572 changes to pilon.changes [pilon] Writing updated NODE_5584_length_572_cov_1.694013_pilon to pilon.fasta [pilon] Writing NODE_5585_length_571_cov_32.035556:1-571 changes to pilon.changes [pilon] Writing updated NODE_5585_length_571_cov_32.035556_pilon to pilon.fasta [pilon] Writing NODE_5586_length_571_cov_19.782222:1-571 changes to pilon.changes [pilon] Writing updated NODE_5586_length_571_cov_19.782222_pilon to pilon.fasta [pilon] Writing NODE_5587_length_571_cov_16.011111:1-571 changes to pilon.changes [pilon] Writing updated NODE_5587_length_571_cov_16.011111_pilon to pilon.fasta [pilon] Writing NODE_5588_length_571_cov_12.044444:1-571 changes to pilon.changes [pilon] Writing updated NODE_5588_length_571_cov_12.044444_pilon to pilon.fasta [pilon] Writing NODE_5589_length_571_cov_10.208889:1-571 changes to pilon.changes [pilon] Writing updated NODE_5589_length_571_cov_10.208889_pilon to pilon.fasta [pilon] Writing NODE_5590_length_571_cov_9.357778:1-571 changes to pilon.changes [pilon] Writing updated NODE_5590_length_571_cov_9.357778_pilon to pilon.fasta [pilon] Writing NODE_5591_length_571_cov_8.886667:1-571 changes to pilon.changes [pilon] Writing updated NODE_5591_length_571_cov_8.886667_pilon to pilon.fasta [pilon] Writing NODE_5592_length_571_cov_3.273333:1-571 changes to pilon.changes [pilon] Writing updated NODE_5592_length_571_cov_3.273333_pilon to pilon.fasta [pilon] Writing NODE_5593_length_571_cov_2.680000:1-571 changes to pilon.changes [pilon] Writing updated NODE_5593_length_571_cov_2.680000_pilon to pilon.fasta [pilon] Writing NODE_5594_length_571_cov_2.364444:1-571 changes to pilon.changes [pilon] Writing updated NODE_5594_length_571_cov_2.364444_pilon to pilon.fasta [pilon] Writing NODE_5595_length_571_cov_2.060000:1-571 changes to pilon.changes [pilon] Writing updated NODE_5595_length_571_cov_2.060000_pilon to pilon.fasta [pilon] Writing NODE_5596_length_571_cov_2.008889:1-571 changes to pilon.changes [pilon] Writing updated NODE_5596_length_571_cov_2.008889_pilon to pilon.fasta [pilon] Writing NODE_5597_length_571_cov_1.926667:1-571 changes to pilon.changes [pilon] Writing updated NODE_5597_length_571_cov_1.926667_pilon to pilon.fasta [pilon] Writing NODE_5598_length_570_cov_31.868597:1-570 changes to pilon.changes [pilon] Writing updated NODE_5598_length_570_cov_31.868597_pilon to pilon.fasta [pilon] Writing NODE_5599_length_570_cov_27.434298:1-570 changes to pilon.changes [pilon] Writing updated NODE_5599_length_570_cov_27.434298_pilon to pilon.fasta [pilon] Writing NODE_5600_length_570_cov_26.298441:1-570 changes to pilon.changes [pilon] Writing updated NODE_5600_length_570_cov_26.298441_pilon to pilon.fasta [pilon] Writing NODE_5601_length_570_cov_24.928731:1-570 changes to pilon.changes [pilon] Writing updated NODE_5601_length_570_cov_24.928731_pilon to pilon.fasta [pilon] Writing NODE_5602_length_570_cov_22.026726:1-570 changes to pilon.changes [pilon] Writing updated NODE_5602_length_570_cov_22.026726_pilon to pilon.fasta [pilon] Writing NODE_5603_length_570_cov_21.129176:1-570 changes to pilon.changes [pilon] Writing updated NODE_5603_length_570_cov_21.129176_pilon to pilon.fasta [pilon] Writing NODE_5604_length_570_cov_19.013363:1-570 changes to pilon.changes [pilon] Writing updated NODE_5604_length_570_cov_19.013363_pilon to pilon.fasta [pilon] Writing NODE_5605_length_570_cov_18.739421:1-570 changes to pilon.changes [pilon] Writing updated NODE_5605_length_570_cov_18.739421_pilon to pilon.fasta [pilon] Writing NODE_5606_length_570_cov_17.534521:1-570 changes to pilon.changes [pilon] Writing updated NODE_5606_length_570_cov_17.534521_pilon to pilon.fasta [pilon] Writing NODE_5607_length_570_cov_16.351893:1-570 changes to pilon.changes [pilon] Writing updated NODE_5607_length_570_cov_16.351893_pilon to pilon.fasta [pilon] Writing NODE_5608_length_570_cov_4.360802:1-570 changes to pilon.changes [pilon] Writing updated NODE_5608_length_570_cov_4.360802_pilon to pilon.fasta [pilon] Writing NODE_5609_length_570_cov_2.380846:1-570 changes to pilon.changes [pilon] Writing updated NODE_5609_length_570_cov_2.380846_pilon to pilon.fasta [pilon] Writing NODE_5610_length_570_cov_1.224944:1-570 changes to pilon.changes [pilon] Writing updated NODE_5610_length_570_cov_1.224944_pilon to pilon.fasta [pilon] Writing NODE_5611_length_570_cov_0.690423:1-570 changes to pilon.changes [pilon] Writing updated NODE_5611_length_570_cov_0.690423_pilon to pilon.fasta [pilon] Writing NODE_5612_length_569_cov_49.330357:1-569 changes to pilon.changes [pilon] Writing updated NODE_5612_length_569_cov_49.330357_pilon to pilon.fasta [pilon] Writing NODE_5613_length_569_cov_23.680804:1-569 changes to pilon.changes [pilon] Writing updated NODE_5613_length_569_cov_23.680804_pilon to pilon.fasta [pilon] Writing NODE_5614_length_569_cov_23.256696:1-569 changes to pilon.changes [pilon] Writing updated NODE_5614_length_569_cov_23.256696_pilon to pilon.fasta [pilon] Writing NODE_5615_length_569_cov_20.645089:1-569 changes to pilon.changes [pilon] Writing updated NODE_5615_length_569_cov_20.645089_pilon to pilon.fasta [pilon] Writing NODE_5616_length_569_cov_20.102679:1-569 changes to pilon.changes [pilon] Writing updated NODE_5616_length_569_cov_20.102679_pilon to pilon.fasta [pilon] Writing NODE_5617_length_569_cov_15.395089:1-569 changes to pilon.changes [pilon] Writing updated NODE_5617_length_569_cov_15.395089_pilon to pilon.fasta [pilon] Writing NODE_5618_length_569_cov_11.265625:1-569 changes to pilon.changes [pilon] Writing updated NODE_5618_length_569_cov_11.265625_pilon to pilon.fasta [pilon] Writing NODE_5619_length_569_cov_3.758929:1-569 changes to pilon.changes [pilon] Writing updated NODE_5619_length_569_cov_3.758929_pilon to pilon.fasta [pilon] Writing NODE_5620_length_569_cov_3.589286:1-569 changes to pilon.changes [pilon] Writing updated NODE_5620_length_569_cov_3.589286_pilon to pilon.fasta [pilon] Writing NODE_5621_length_569_cov_2.104911:1-569 changes to pilon.changes [pilon] Writing updated NODE_5621_length_569_cov_2.104911_pilon to pilon.fasta [pilon] Writing NODE_5622_length_569_cov_1.988839:1-569 changes to pilon.changes [pilon] Writing updated NODE_5622_length_569_cov_1.988839_pilon to pilon.fasta [pilon] Writing NODE_5623_length_569_cov_1.732143:1-569 changes to pilon.changes [pilon] Writing updated NODE_5623_length_569_cov_1.732143_pilon to pilon.fasta [pilon] Writing NODE_5624_length_569_cov_1.540179:1-569 changes to pilon.changes [pilon] Writing updated NODE_5624_length_569_cov_1.540179_pilon to pilon.fasta [pilon] Writing NODE_5625_length_569_cov_1.511161:1-569 changes to pilon.changes [pilon] Writing updated NODE_5625_length_569_cov_1.511161_pilon to pilon.fasta [pilon] Writing NODE_5626_length_568_cov_43.550336:1-568 changes to pilon.changes [pilon] Writing updated NODE_5626_length_568_cov_43.550336_pilon to pilon.fasta [pilon] Writing NODE_5627_length_568_cov_40.472036:1-568 changes to pilon.changes [pilon] Writing updated NODE_5627_length_568_cov_40.472036_pilon to pilon.fasta [pilon] Writing NODE_5628_length_568_cov_27.512304:1-568 changes to pilon.changes [pilon] Writing updated NODE_5628_length_568_cov_27.512304_pilon to pilon.fasta [pilon] Writing NODE_5629_length_568_cov_21.581655:1-568 changes to pilon.changes [pilon] Writing updated NODE_5629_length_568_cov_21.581655_pilon to pilon.fasta [pilon] Writing NODE_5630_length_568_cov_16.941834:1-568 changes to pilon.changes [pilon] Writing updated NODE_5630_length_568_cov_16.941834_pilon to pilon.fasta [pilon] Writing NODE_5631_length_568_cov_11.161074:1-568 changes to pilon.changes [pilon] Writing updated NODE_5631_length_568_cov_11.161074_pilon to pilon.fasta [pilon] Writing NODE_5632_length_568_cov_9.953020:1-568 changes to pilon.changes [pilon] Writing updated NODE_5632_length_568_cov_9.953020_pilon to pilon.fasta [pilon] Writing NODE_5633_length_568_cov_9.838926:1-568 changes to pilon.changes [pilon] Writing updated NODE_5633_length_568_cov_9.838926_pilon to pilon.fasta [pilon] Writing NODE_5634_length_568_cov_7.968680:1-568 changes to pilon.changes [pilon] Writing updated NODE_5634_length_568_cov_7.968680_pilon to pilon.fasta [pilon] Writing NODE_5635_length_568_cov_3.536913:1-568 changes to pilon.changes [pilon] Writing updated NODE_5635_length_568_cov_3.536913_pilon to pilon.fasta [pilon] Writing NODE_5636_length_568_cov_2.606264:1-568 changes to pilon.changes [pilon] Writing updated NODE_5636_length_568_cov_2.606264_pilon to pilon.fasta [pilon] Writing NODE_5637_length_568_cov_2.078300:1-568 changes to pilon.changes [pilon] Writing updated NODE_5637_length_568_cov_2.078300_pilon to pilon.fasta [pilon] Writing NODE_5638_length_568_cov_1.807606:1-568 changes to pilon.changes [pilon] Writing updated NODE_5638_length_568_cov_1.807606_pilon to pilon.fasta [pilon] Writing NODE_5639_length_568_cov_1.055928:1-568 changes to pilon.changes [pilon] Writing updated NODE_5639_length_568_cov_1.055928_pilon to pilon.fasta [pilon] Writing NODE_5640_length_568_cov_1.026846:1-568 changes to pilon.changes [pilon] Writing updated NODE_5640_length_568_cov_1.026846_pilon to pilon.fasta [pilon] Writing NODE_5641_length_568_cov_0.762864:1-568 changes to pilon.changes [pilon] Writing updated NODE_5641_length_568_cov_0.762864_pilon to pilon.fasta [pilon] Writing NODE_5642_length_567_cov_37.347534:1-567 changes to pilon.changes [pilon] Writing updated NODE_5642_length_567_cov_37.347534_pilon to pilon.fasta [pilon] Writing NODE_5643_length_567_cov_32.825112:1-567 changes to pilon.changes [pilon] Writing updated NODE_5643_length_567_cov_32.825112_pilon to pilon.fasta [pilon] Writing NODE_5644_length_567_cov_29.381166:1-567 changes to pilon.changes [pilon] Writing updated NODE_5644_length_567_cov_29.381166_pilon to pilon.fasta [pilon] Writing NODE_5645_length_567_cov_26.423767:1-567 changes to pilon.changes [pilon] Writing updated NODE_5645_length_567_cov_26.423767_pilon to pilon.fasta [pilon] Writing NODE_5646_length_567_cov_26.015695:1-567 changes to pilon.changes [pilon] Writing updated NODE_5646_length_567_cov_26.015695_pilon to pilon.fasta [pilon] Writing NODE_5647_length_567_cov_25.652466:1-567 changes to pilon.changes [pilon] Writing updated NODE_5647_length_567_cov_25.652466_pilon to pilon.fasta [pilon] Writing NODE_5648_length_567_cov_15.717489:1-567 changes to pilon.changes [pilon] Writing updated NODE_5648_length_567_cov_15.717489_pilon to pilon.fasta [pilon] Writing NODE_5649_length_567_cov_15.053812:1-567 changes to pilon.changes [pilon] Writing updated NODE_5649_length_567_cov_15.053812_pilon to pilon.fasta [pilon] Writing NODE_5650_length_567_cov_10.894619:1-567 changes to pilon.changes [pilon] Writing updated NODE_5650_length_567_cov_10.894619_pilon to pilon.fasta [pilon] Writing NODE_5651_length_567_cov_3.486547:1-567 changes to pilon.changes [pilon] Writing updated NODE_5651_length_567_cov_3.486547_pilon to pilon.fasta [pilon] Writing NODE_5652_length_567_cov_2.244395:1-567 changes to pilon.changes [pilon] Writing updated NODE_5652_length_567_cov_2.244395_pilon to pilon.fasta [pilon] Writing NODE_5653_length_567_cov_1.022422:1-567 changes to pilon.changes [pilon] Writing updated NODE_5653_length_567_cov_1.022422_pilon to pilon.fasta [pilon] Writing NODE_5654_length_566_cov_49.907865:1-566 changes to pilon.changes [pilon] Writing updated NODE_5654_length_566_cov_49.907865_pilon to pilon.fasta [pilon] Writing NODE_5655_length_566_cov_19.993258:1-566 changes to pilon.changes [pilon] Writing updated NODE_5655_length_566_cov_19.993258_pilon to pilon.fasta [pilon] Writing NODE_5656_length_566_cov_19.685393:1-566 changes to pilon.changes [pilon] Writing updated NODE_5656_length_566_cov_19.685393_pilon to pilon.fasta [pilon] Writing NODE_5657_length_566_cov_13.622472:1-566 changes to pilon.changes [pilon] Writing updated NODE_5657_length_566_cov_13.622472_pilon to pilon.fasta [pilon] Writing NODE_5658_length_566_cov_13.168539:1-566 changes to pilon.changes [pilon] Writing updated NODE_5658_length_566_cov_13.168539_pilon to pilon.fasta [pilon] Writing NODE_5659_length_566_cov_10.177528:1-566 changes to pilon.changes [pilon] Writing updated NODE_5659_length_566_cov_10.177528_pilon to pilon.fasta [pilon] Writing NODE_5660_length_566_cov_4.528090:1-566 changes to pilon.changes [pilon] Writing updated NODE_5660_length_566_cov_4.528090_pilon to pilon.fasta [pilon] Writing NODE_5661_length_566_cov_3.570787:1-566 changes to pilon.changes [pilon] Writing updated NODE_5661_length_566_cov_3.570787_pilon to pilon.fasta [pilon] Writing NODE_5662_length_566_cov_2.734831:1-566 changes to pilon.changes [pilon] Writing updated NODE_5662_length_566_cov_2.734831_pilon to pilon.fasta [pilon] Writing NODE_5663_length_566_cov_2.197753:1-566 changes to pilon.changes [pilon] Writing updated NODE_5663_length_566_cov_2.197753_pilon to pilon.fasta [pilon] Writing NODE_5664_length_566_cov_1.604494:1-566 changes to pilon.changes [pilon] Writing updated NODE_5664_length_566_cov_1.604494_pilon to pilon.fasta [pilon] Writing NODE_5665_length_566_cov_1.269663:1-566 changes to pilon.changes [pilon] Writing updated NODE_5665_length_566_cov_1.269663_pilon to pilon.fasta [pilon] Writing NODE_5666_length_566_cov_1.105618:1-566 changes to pilon.changes [pilon] Writing updated NODE_5666_length_566_cov_1.105618_pilon to pilon.fasta [pilon] Writing NODE_5667_length_566_cov_0.325843:1-566 changes to pilon.changes [pilon] Writing updated NODE_5667_length_566_cov_0.325843_pilon to pilon.fasta [pilon] Writing NODE_5668_length_565_cov_33.477477:1-565 changes to pilon.changes [pilon] Writing updated NODE_5668_length_565_cov_33.477477_pilon to pilon.fasta [pilon] Writing NODE_5669_length_565_cov_25.727477:1-565 changes to pilon.changes [pilon] Writing updated NODE_5669_length_565_cov_25.727477_pilon to pilon.fasta [pilon] Writing NODE_5670_length_565_cov_21.673423:1-565 changes to pilon.changes [pilon] Writing updated NODE_5670_length_565_cov_21.673423_pilon to pilon.fasta [pilon] Writing NODE_5671_length_565_cov_20.822072:1-565 changes to pilon.changes [pilon] Writing updated NODE_5671_length_565_cov_20.822072_pilon to pilon.fasta [pilon] Writing NODE_5672_length_565_cov_18.867117:1-565 changes to pilon.changes [pilon] Writing updated NODE_5672_length_565_cov_18.867117_pilon to pilon.fasta [pilon] Writing NODE_5673_length_565_cov_7.925676:1-565 changes to pilon.changes [pilon] Writing updated NODE_5673_length_565_cov_7.925676_pilon to pilon.fasta [pilon] Writing NODE_5674_length_564_cov_43.514673:1-564 changes to pilon.changes [pilon] Writing updated NODE_5674_length_564_cov_43.514673_pilon to pilon.fasta [pilon] Writing NODE_5675_length_564_cov_39.823928:1-564 changes to pilon.changes [pilon] Writing updated NODE_5675_length_564_cov_39.823928_pilon to pilon.fasta [pilon] Writing NODE_5676_length_564_cov_28.203160:1-564 changes to pilon.changes [pilon] Writing updated NODE_5676_length_564_cov_28.203160_pilon to pilon.fasta [pilon] Writing NODE_5677_length_564_cov_27.604966:1-564 changes to pilon.changes [pilon] Writing updated NODE_5677_length_564_cov_27.604966_pilon to pilon.fasta [pilon] Writing NODE_5678_length_564_cov_26.571106:1-564 changes to pilon.changes [pilon] Writing updated NODE_5678_length_564_cov_26.571106_pilon to pilon.fasta [pilon] Writing NODE_5679_length_564_cov_24.139955:1-564 changes to pilon.changes [pilon] Writing updated NODE_5679_length_564_cov_24.139955_pilon to pilon.fasta [pilon] Writing NODE_5680_length_564_cov_22.146727:1-564 changes to pilon.changes [pilon] Writing updated NODE_5680_length_564_cov_22.146727_pilon to pilon.fasta [pilon] Writing NODE_5681_length_564_cov_20.577878:1-564 changes to pilon.changes [pilon] Writing updated NODE_5681_length_564_cov_20.577878_pilon to pilon.fasta [pilon] Writing NODE_5682_length_564_cov_19.984199:1-564 changes to pilon.changes [pilon] Writing updated NODE_5682_length_564_cov_19.984199_pilon to pilon.fasta [pilon] Writing NODE_5683_length_564_cov_19.598194:1-564 changes to pilon.changes [pilon] Writing updated NODE_5683_length_564_cov_19.598194_pilon to pilon.fasta [pilon] Writing NODE_5684_length_564_cov_16.097065:1-564 changes to pilon.changes [pilon] Writing updated NODE_5684_length_564_cov_16.097065_pilon to pilon.fasta [pilon] Writing NODE_5685_length_564_cov_13.444695:1-564 changes to pilon.changes [pilon] Writing updated NODE_5685_length_564_cov_13.444695_pilon to pilon.fasta [pilon] Writing NODE_5686_length_564_cov_12.474041:1-564 changes to pilon.changes [pilon] Writing updated NODE_5686_length_564_cov_12.474041_pilon to pilon.fasta [pilon] Writing NODE_5687_length_564_cov_11.830700:1-564 changes to pilon.changes [pilon] Writing updated NODE_5687_length_564_cov_11.830700_pilon to pilon.fasta [pilon] Writing NODE_5688_length_564_cov_10.413093:1-564 changes to pilon.changes [pilon] Writing updated NODE_5688_length_564_cov_10.413093_pilon to pilon.fasta [pilon] Writing NODE_5689_length_564_cov_9.826185:1-564 changes to pilon.changes [pilon] Writing updated NODE_5689_length_564_cov_9.826185_pilon to pilon.fasta [pilon] Writing NODE_5690_length_564_cov_5.988713:1-564 changes to pilon.changes [pilon] Writing updated NODE_5690_length_564_cov_5.988713_pilon to pilon.fasta [pilon] Writing NODE_5691_length_564_cov_2.568849:1-564 changes to pilon.changes [pilon] Writing updated NODE_5691_length_564_cov_2.568849_pilon to pilon.fasta [pilon] Writing NODE_5692_length_564_cov_1.726862:1-564 changes to pilon.changes [pilon] Writing updated NODE_5692_length_564_cov_1.726862_pilon to pilon.fasta [pilon] Writing NODE_5693_length_564_cov_1.318284:1-564 changes to pilon.changes [pilon] Writing updated NODE_5693_length_564_cov_1.318284_pilon to pilon.fasta [pilon] Writing NODE_5694_length_564_cov_1.205418:1-564 changes to pilon.changes [pilon] Writing updated NODE_5694_length_564_cov_1.205418_pilon to pilon.fasta [pilon] Writing NODE_5695_length_564_cov_1.205418:1-564 changes to pilon.changes [pilon] Writing updated NODE_5695_length_564_cov_1.205418_pilon to pilon.fasta [pilon] Writing NODE_5696_length_564_cov_0.580135:1-564 changes to pilon.changes [pilon] Writing updated NODE_5696_length_564_cov_0.580135_pilon to pilon.fasta [pilon] Writing NODE_5697_length_563_cov_51.341629:1-563 changes to pilon.changes [pilon] Writing updated NODE_5697_length_563_cov_51.341629_pilon to pilon.fasta [pilon] Writing NODE_5698_length_563_cov_49.477376:1-563 changes to pilon.changes [pilon] Writing updated NODE_5698_length_563_cov_49.477376_pilon to pilon.fasta [pilon] Writing NODE_5699_length_563_cov_42.151584:1-563 changes to pilon.changes [pilon] Writing updated NODE_5699_length_563_cov_42.151584_pilon to pilon.fasta [pilon] Writing NODE_5700_length_563_cov_41.108597:1-563 changes to pilon.changes [pilon] Writing updated NODE_5700_length_563_cov_41.108597_pilon to pilon.fasta [pilon] Writing NODE_5701_length_563_cov_38.581448:1-563 changes to pilon.changes [pilon] Writing updated NODE_5701_length_563_cov_38.581448_pilon to pilon.fasta [pilon] Writing NODE_5702_length_563_cov_31.780543:1-563 changes to pilon.changes [pilon] Writing updated NODE_5702_length_563_cov_31.780543_pilon to pilon.fasta [pilon] Writing NODE_5703_length_563_cov_18.124434:1-563 changes to pilon.changes [pilon] Writing updated NODE_5703_length_563_cov_18.124434_pilon to pilon.fasta [pilon] Writing NODE_5704_length_563_cov_17.626697:1-563 changes to pilon.changes [pilon] Writing updated NODE_5704_length_563_cov_17.626697_pilon to pilon.fasta [pilon] Writing NODE_5705_length_563_cov_17.029412:1-563 changes to pilon.changes [pilon] Writing updated NODE_5705_length_563_cov_17.029412_pilon to pilon.fasta [pilon] Writing NODE_5706_length_563_cov_15.839367:1-563 changes to pilon.changes [pilon] Writing updated NODE_5706_length_563_cov_15.839367_pilon to pilon.fasta [pilon] Writing NODE_5707_length_563_cov_3.142534:1-563 changes to pilon.changes [pilon] Writing updated NODE_5707_length_563_cov_3.142534_pilon to pilon.fasta [pilon] Writing NODE_5708_length_563_cov_2.592760:1-563 changes to pilon.changes [pilon] Writing updated NODE_5708_length_563_cov_2.592760_pilon to pilon.fasta [pilon] Writing NODE_5709_length_563_cov_1.796380:1-563 changes to pilon.changes [pilon] Writing updated NODE_5709_length_563_cov_1.796380_pilon to pilon.fasta [pilon] Writing NODE_5710_length_563_cov_1.095023:1-563 changes to pilon.changes [pilon] Writing updated NODE_5710_length_563_cov_1.095023_pilon to pilon.fasta [pilon] Writing NODE_5711_length_563_cov_0.934389:1-563 changes to pilon.changes [pilon] Writing updated NODE_5711_length_563_cov_0.934389_pilon to pilon.fasta [pilon] Writing NODE_5712_length_562_cov_36.591837:1-562 changes to pilon.changes [pilon] Writing updated NODE_5712_length_562_cov_36.591837_pilon to pilon.fasta [pilon] Writing NODE_5713_length_562_cov_20.918367:1-562 changes to pilon.changes [pilon] Writing updated NODE_5713_length_562_cov_20.918367_pilon to pilon.fasta [pilon] Writing NODE_5714_length_562_cov_19.301587:1-562 changes to pilon.changes [pilon] Writing updated NODE_5714_length_562_cov_19.301587_pilon to pilon.fasta [pilon] Writing NODE_5715_length_562_cov_14.029478:1-562 changes to pilon.changes [pilon] Writing updated NODE_5715_length_562_cov_14.029478_pilon to pilon.fasta [pilon] Writing NODE_5716_length_562_cov_7.802721:1-562 changes to pilon.changes [pilon] Writing updated NODE_5716_length_562_cov_7.802721_pilon to pilon.fasta [pilon] Writing NODE_5717_length_562_cov_3.108844:1-562 changes to pilon.changes [pilon] Writing updated NODE_5717_length_562_cov_3.108844_pilon to pilon.fasta [pilon] Writing NODE_5718_length_562_cov_1.839002:1-562 changes to pilon.changes [pilon] Writing updated NODE_5718_length_562_cov_1.839002_pilon to pilon.fasta [pilon] Writing NODE_5719_length_562_cov_1.267574:1-562 changes to pilon.changes [pilon] Writing updated NODE_5719_length_562_cov_1.267574_pilon to pilon.fasta [pilon] Writing NODE_5720_length_562_cov_0.843537:1-562 changes to pilon.changes [pilon] Writing updated NODE_5720_length_562_cov_0.843537_pilon to pilon.fasta [pilon] Writing NODE_5721_length_561_cov_52.995455:1-561 changes to pilon.changes [pilon] Writing updated NODE_5721_length_561_cov_52.995455_pilon to pilon.fasta [pilon] Writing NODE_5722_length_561_cov_28.997727:1-561 changes to pilon.changes [pilon] Writing updated NODE_5722_length_561_cov_28.997727_pilon to pilon.fasta [pilon] Writing NODE_5723_length_561_cov_28.429545:1-561 changes to pilon.changes [pilon] Writing updated NODE_5723_length_561_cov_28.429545_pilon to pilon.fasta [pilon] Writing NODE_5724_length_561_cov_27.934091:1-561 changes to pilon.changes [pilon] Writing updated NODE_5724_length_561_cov_27.934091_pilon to pilon.fasta [pilon] Writing NODE_5725_length_561_cov_26.268182:1-561 changes to pilon.changes [pilon] Writing updated NODE_5725_length_561_cov_26.268182_pilon to pilon.fasta [pilon] Writing NODE_5726_length_561_cov_20.990909:1-561 changes to pilon.changes [pilon] Writing updated NODE_5726_length_561_cov_20.990909_pilon to pilon.fasta [pilon] Writing NODE_5727_length_561_cov_16.843182:1-561 changes to pilon.changes [pilon] Writing updated NODE_5727_length_561_cov_16.843182_pilon to pilon.fasta [pilon] Writing NODE_5728_length_561_cov_5.313636:1-561 changes to pilon.changes [pilon] Writing updated NODE_5728_length_561_cov_5.313636_pilon to pilon.fasta [pilon] Writing NODE_5729_length_561_cov_1.068182:1-561 changes to pilon.changes [pilon] Writing updated NODE_5729_length_561_cov_1.068182_pilon to pilon.fasta [pilon] Writing NODE_5730_length_561_cov_0.470455:1-561 changes to pilon.changes [pilon] Writing updated NODE_5730_length_561_cov_0.470455_pilon to pilon.fasta [pilon] Writing NODE_5731_length_560_cov_51.266515:1-560 changes to pilon.changes [pilon] Writing updated NODE_5731_length_560_cov_51.266515_pilon to pilon.fasta [pilon] Writing NODE_5732_length_560_cov_47.694761:1-560 changes to pilon.changes [pilon] Writing updated NODE_5732_length_560_cov_47.694761_pilon to pilon.fasta [pilon] Writing NODE_5733_length_560_cov_27.808656:1-560 changes to pilon.changes [pilon] Writing updated NODE_5733_length_560_cov_27.808656_pilon to pilon.fasta [pilon] Writing NODE_5734_length_560_cov_25.405467:1-560 changes to pilon.changes [pilon] Writing updated NODE_5734_length_560_cov_25.405467_pilon to pilon.fasta [pilon] Writing NODE_5735_length_560_cov_24.681093:1-560 changes to pilon.changes [pilon] Writing updated NODE_5735_length_560_cov_24.681093_pilon to pilon.fasta [pilon] Writing NODE_5736_length_560_cov_24.170843:1-560 changes to pilon.changes [pilon] Writing updated NODE_5736_length_560_cov_24.170843_pilon to pilon.fasta [pilon] Writing NODE_5737_length_560_cov_21.473804:1-560 changes to pilon.changes [pilon] Writing updated NODE_5737_length_560_cov_21.473804_pilon to pilon.fasta [pilon] Writing NODE_5738_length_560_cov_19.198178:1-560 changes to pilon.changes [pilon] Writing updated NODE_5738_length_560_cov_19.198178_pilon to pilon.fasta [pilon] Writing NODE_5739_length_560_cov_18.731207:1-560 changes to pilon.changes [pilon] Writing updated NODE_5739_length_560_cov_18.731207_pilon to pilon.fasta [pilon] Writing NODE_5740_length_560_cov_12.560364:1-560 changes to pilon.changes [pilon] Writing updated NODE_5740_length_560_cov_12.560364_pilon to pilon.fasta [pilon] Writing NODE_5741_length_560_cov_11.353075:1-560 changes to pilon.changes [pilon] Writing updated NODE_5741_length_560_cov_11.353075_pilon to pilon.fasta [pilon] Writing NODE_5742_length_560_cov_10.851936:1-560 changes to pilon.changes [pilon] Writing updated NODE_5742_length_560_cov_10.851936_pilon to pilon.fasta [pilon] Writing NODE_5743_length_560_cov_8.694761:1-560 changes to pilon.changes [pilon] Writing updated NODE_5743_length_560_cov_8.694761_pilon to pilon.fasta [pilon] Writing NODE_5744_length_560_cov_7.138952:1-560 changes to pilon.changes [pilon] Writing updated NODE_5744_length_560_cov_7.138952_pilon to pilon.fasta [pilon] Writing NODE_5745_length_560_cov_2.849658:1-560 changes to pilon.changes [pilon] Writing updated NODE_5745_length_560_cov_2.849658_pilon to pilon.fasta [pilon] Writing NODE_5746_length_560_cov_2.676538:1-560 changes to pilon.changes [pilon] Writing updated NODE_5746_length_560_cov_2.676538_pilon to pilon.fasta [pilon] Writing NODE_5747_length_560_cov_2.220957:1-560 changes to pilon.changes [pilon] Writing updated NODE_5747_length_560_cov_2.220957_pilon to pilon.fasta [pilon] Writing NODE_5748_length_560_cov_0.904328:1-560 changes to pilon.changes [pilon] Writing updated NODE_5748_length_560_cov_0.904328_pilon to pilon.fasta [pilon] Writing NODE_5749_length_560_cov_0.865604:1-560 changes to pilon.changes [pilon] Writing updated NODE_5749_length_560_cov_0.865604_pilon to pilon.fasta [pilon] Writing NODE_5750_length_560_cov_0.785877:1-560 changes to pilon.changes [pilon] Writing updated NODE_5750_length_560_cov_0.785877_pilon to pilon.fasta [pilon] Writing NODE_5751_length_559_cov_39.652968:1-559 changes to pilon.changes [pilon] Writing updated NODE_5751_length_559_cov_39.652968_pilon to pilon.fasta [pilon] Writing NODE_5752_length_559_cov_23.755708:1-559 changes to pilon.changes [pilon] Writing updated NODE_5752_length_559_cov_23.755708_pilon to pilon.fasta [pilon] Writing NODE_5753_length_559_cov_22.143836:1-559 changes to pilon.changes [pilon] Writing updated NODE_5753_length_559_cov_22.143836_pilon to pilon.fasta [pilon] Writing NODE_5754_length_559_cov_18.785388:1-559 changes to pilon.changes [pilon] Writing updated NODE_5754_length_559_cov_18.785388_pilon to pilon.fasta [pilon] Writing NODE_5755_length_559_cov_17.013699:1-559 changes to pilon.changes [pilon] Writing updated NODE_5755_length_559_cov_17.013699_pilon to pilon.fasta [pilon] Writing NODE_5756_length_559_cov_13.908676:1-559 changes to pilon.changes [pilon] Writing updated NODE_5756_length_559_cov_13.908676_pilon to pilon.fasta [pilon] Writing NODE_5757_length_559_cov_7.840183:1-559 changes to pilon.changes [pilon] Writing updated NODE_5757_length_559_cov_7.840183_pilon to pilon.fasta [pilon] Writing NODE_5758_length_559_cov_3.063927:1-559 changes to pilon.changes [pilon] Writing updated NODE_5758_length_559_cov_3.063927_pilon to pilon.fasta [pilon] Writing NODE_5759_length_559_cov_2.821918:1-559 changes to pilon.changes [pilon] Writing updated NODE_5759_length_559_cov_2.821918_pilon to pilon.fasta [pilon] Writing NODE_5760_length_559_cov_2.449772:1-559 changes to pilon.changes [pilon] Writing updated NODE_5760_length_559_cov_2.449772_pilon to pilon.fasta [pilon] Writing NODE_5761_length_559_cov_1.034247:1-559 changes to pilon.changes [pilon] Writing updated NODE_5761_length_559_cov_1.034247_pilon to pilon.fasta [pilon] Writing NODE_5762_length_559_cov_0.942922:1-559 changes to pilon.changes [pilon] Writing updated NODE_5762_length_559_cov_0.942922_pilon to pilon.fasta [pilon] Writing NODE_5763_length_559_cov_0.726027:1-559 changes to pilon.changes [pilon] Writing updated NODE_5763_length_559_cov_0.726027_pilon to pilon.fasta [pilon] Writing NODE_5764_length_558_cov_54.546911:1-558 changes to pilon.changes [pilon] Writing updated NODE_5764_length_558_cov_54.546911_pilon to pilon.fasta [pilon] Writing NODE_5765_length_558_cov_16.205950:1-558 changes to pilon.changes [pilon] Writing updated NODE_5765_length_558_cov_16.205950_pilon to pilon.fasta [pilon] Writing NODE_5766_length_558_cov_15.302059:1-558 changes to pilon.changes [pilon] Writing updated NODE_5766_length_558_cov_15.302059_pilon to pilon.fasta [pilon] Writing NODE_5767_length_558_cov_12.132723:1-558 changes to pilon.changes [pilon] Writing updated NODE_5767_length_558_cov_12.132723_pilon to pilon.fasta [pilon] Writing NODE_5768_length_558_cov_6.897025:1-558 changes to pilon.changes [pilon] Writing updated NODE_5768_length_558_cov_6.897025_pilon to pilon.fasta [pilon] Writing NODE_5769_length_558_cov_3.709382:1-558 changes to pilon.changes [pilon] Writing updated NODE_5769_length_558_cov_3.709382_pilon to pilon.fasta [pilon] Writing NODE_5770_length_558_cov_3.201373:1-558 changes to pilon.changes [pilon] Writing updated NODE_5770_length_558_cov_3.201373_pilon to pilon.fasta [pilon] Writing NODE_5771_length_558_cov_1.926773:1-558 changes to pilon.changes [pilon] Writing updated NODE_5771_length_558_cov_1.926773_pilon to pilon.fasta [pilon] Writing NODE_5772_length_558_cov_0.590389:1-558 changes to pilon.changes [pilon] Writing updated NODE_5772_length_558_cov_0.590389_pilon to pilon.fasta [pilon] Writing NODE_5773_length_557_cov_45.713303:1-557 changes to pilon.changes [pilon] Writing updated NODE_5773_length_557_cov_45.713303_pilon to pilon.fasta [pilon] Writing NODE_5774_length_557_cov_31.532110:1-557 changes to pilon.changes [pilon] Writing updated NODE_5774_length_557_cov_31.532110_pilon to pilon.fasta [pilon] Writing NODE_5775_length_557_cov_28.919725:1-557 changes to pilon.changes [pilon] Writing updated NODE_5775_length_557_cov_28.919725_pilon to pilon.fasta [pilon] Writing NODE_5776_length_557_cov_16.245413:1-557 changes to pilon.changes [pilon] Writing updated NODE_5776_length_557_cov_16.245413_pilon to pilon.fasta [pilon] Writing NODE_5777_length_557_cov_14.442661:1-557 changes to pilon.changes [pilon] Writing updated NODE_5777_length_557_cov_14.442661_pilon to pilon.fasta [pilon] Writing NODE_5778_length_557_cov_7.250000:1-557 changes to pilon.changes [pilon] Writing updated NODE_5778_length_557_cov_7.250000_pilon to pilon.fasta [pilon] Writing NODE_5779_length_557_cov_6.809633:1-557 changes to pilon.changes [pilon] Writing updated NODE_5779_length_557_cov_6.809633_pilon to pilon.fasta [pilon] Writing NODE_5780_length_557_cov_6.763761:1-557 changes to pilon.changes [pilon] Writing updated NODE_5780_length_557_cov_6.763761_pilon to pilon.fasta [pilon] Writing NODE_5781_length_557_cov_5.128440:1-557 changes to pilon.changes [pilon] Writing updated NODE_5781_length_557_cov_5.128440_pilon to pilon.fasta [pilon] Writing NODE_5782_length_557_cov_1.561927:1-557 changes to pilon.changes [pilon] Writing updated NODE_5782_length_557_cov_1.561927_pilon to pilon.fasta [pilon] Writing NODE_5783_length_557_cov_1.300459:1-557 changes to pilon.changes [pilon] Writing updated NODE_5783_length_557_cov_1.300459_pilon to pilon.fasta [pilon] Writing NODE_5784_length_557_cov_1.247706:1-557 changes to pilon.changes [pilon] Writing updated NODE_5784_length_557_cov_1.247706_pilon to pilon.fasta [pilon] Writing NODE_5785_length_557_cov_0.772936:1-557 changes to pilon.changes [pilon] Writing updated NODE_5785_length_557_cov_0.772936_pilon to pilon.fasta [pilon] Writing NODE_5786_length_556_cov_55.018391:1-556 changes to pilon.changes [pilon] Writing updated NODE_5786_length_556_cov_55.018391_pilon to pilon.fasta [pilon] Writing NODE_5787_length_556_cov_37.250575:1-556 changes to pilon.changes [pilon] Writing updated NODE_5787_length_556_cov_37.250575_pilon to pilon.fasta [pilon] Writing NODE_5788_length_556_cov_28.560920:1-556 changes to pilon.changes [pilon] Writing updated NODE_5788_length_556_cov_28.560920_pilon to pilon.fasta [pilon] Writing NODE_5789_length_556_cov_15.140230:1-556 changes to pilon.changes [pilon] Writing updated NODE_5789_length_556_cov_15.140230_pilon to pilon.fasta [pilon] Writing NODE_5790_length_556_cov_3.931034:1-556 changes to pilon.changes [pilon] Writing updated NODE_5790_length_556_cov_3.931034_pilon to pilon.fasta [pilon] Writing NODE_5791_length_556_cov_1.859770:1-556 changes to pilon.changes [pilon] Writing updated NODE_5791_length_556_cov_1.859770_pilon to pilon.fasta [pilon] Writing NODE_5792_length_556_cov_1.039080:1-556 changes to pilon.changes [pilon] Writing updated NODE_5792_length_556_cov_1.039080_pilon to pilon.fasta [pilon] Writing NODE_5793_length_555_cov_48.156682:1-555 changes to pilon.changes [pilon] Writing updated NODE_5793_length_555_cov_48.156682_pilon to pilon.fasta [pilon] Writing NODE_5794_length_555_cov_44.195853:1-555 changes to pilon.changes [pilon] Writing updated NODE_5794_length_555_cov_44.195853_pilon to pilon.fasta [pilon] Writing NODE_5795_length_555_cov_30.843318:1-555 changes to pilon.changes [pilon] Writing updated NODE_5795_length_555_cov_30.843318_pilon to pilon.fasta [pilon] Writing NODE_5796_length_555_cov_29.926267:1-555 changes to pilon.changes [pilon] Writing updated NODE_5796_length_555_cov_29.926267_pilon to pilon.fasta [pilon] Writing NODE_5797_length_555_cov_20.082949:1-555 changes to pilon.changes [pilon] Writing updated NODE_5797_length_555_cov_20.082949_pilon to pilon.fasta [pilon] Writing NODE_5798_length_555_cov_16.900922:1-555 changes to pilon.changes [pilon] Writing updated NODE_5798_length_555_cov_16.900922_pilon to pilon.fasta [pilon] Writing NODE_5799_length_555_cov_16.426267:1-555 changes to pilon.changes [pilon] Writing updated NODE_5799_length_555_cov_16.426267_pilon to pilon.fasta [pilon] Writing NODE_5800_length_555_cov_12.877880:1-555 changes to pilon.changes [pilon] Writing updated NODE_5800_length_555_cov_12.877880_pilon to pilon.fasta [pilon] Writing NODE_5801_length_555_cov_7.241935:1-555 changes to pilon.changes [pilon] Writing updated NODE_5801_length_555_cov_7.241935_pilon to pilon.fasta [pilon] Writing NODE_5802_length_555_cov_3.569124:1-555 changes to pilon.changes [pilon] Writing updated NODE_5802_length_555_cov_3.569124_pilon to pilon.fasta [pilon] Writing NODE_5803_length_555_cov_3.301843:1-555 changes to pilon.changes [pilon] Writing updated NODE_5803_length_555_cov_3.301843_pilon to pilon.fasta [pilon] Writing NODE_5804_length_555_cov_2.269585:1-555 changes to pilon.changes [pilon] Writing updated NODE_5804_length_555_cov_2.269585_pilon to pilon.fasta [pilon] Writing NODE_5805_length_555_cov_1.698157:1-555 changes to pilon.changes [pilon] Writing updated NODE_5805_length_555_cov_1.698157_pilon to pilon.fasta [pilon] Writing NODE_5806_length_555_cov_1.534562:1-555 changes to pilon.changes [pilon] Writing updated NODE_5806_length_555_cov_1.534562_pilon to pilon.fasta [pilon] Writing NODE_5807_length_555_cov_1.509217:1-555 changes to pilon.changes [pilon] Writing updated NODE_5807_length_555_cov_1.509217_pilon to pilon.fasta [pilon] Writing NODE_5808_length_555_cov_1.069124:1-555 changes to pilon.changes [pilon] Writing updated NODE_5808_length_555_cov_1.069124_pilon to pilon.fasta [pilon] Writing NODE_5809_length_555_cov_0.797235:1-555 changes to pilon.changes [pilon] Writing updated NODE_5809_length_555_cov_0.797235_pilon to pilon.fasta [pilon] Writing NODE_5810_length_554_cov_49.233256:1-554 changes to pilon.changes [pilon] Writing updated NODE_5810_length_554_cov_49.233256_pilon to pilon.fasta [pilon] Writing NODE_5811_length_554_cov_45.972286:1-554 changes to pilon.changes [pilon] Writing updated NODE_5811_length_554_cov_45.972286_pilon to pilon.fasta [pilon] Writing NODE_5812_length_554_cov_27.085450:1-554 changes to pilon.changes [pilon] Writing updated NODE_5812_length_554_cov_27.085450_pilon to pilon.fasta [pilon] Writing NODE_5813_length_554_cov_24.120092:1-554 changes to pilon.changes [pilon] Writing updated NODE_5813_length_554_cov_24.120092_pilon to pilon.fasta [pilon] Writing NODE_5814_length_554_cov_19.103926:1-554 changes to pilon.changes [pilon] Writing updated NODE_5814_length_554_cov_19.103926_pilon to pilon.fasta [pilon] Writing NODE_5815_length_554_cov_18.702079:1-554 changes to pilon.changes [pilon] Writing updated NODE_5815_length_554_cov_18.702079_pilon to pilon.fasta [pilon] Writing NODE_5816_length_554_cov_16.893764:1-554 changes to pilon.changes [pilon] Writing updated NODE_5816_length_554_cov_16.893764_pilon to pilon.fasta [pilon] Writing NODE_5817_length_554_cov_16.630485:1-554 changes to pilon.changes [pilon] Writing updated NODE_5817_length_554_cov_16.630485_pilon to pilon.fasta [pilon] Writing NODE_5818_length_554_cov_4.524249:1-554 changes to pilon.changes [pilon] Writing updated NODE_5818_length_554_cov_4.524249_pilon to pilon.fasta [pilon] Writing NODE_5819_length_554_cov_4.265589:1-554 changes to pilon.changes [pilon] Writing updated NODE_5819_length_554_cov_4.265589_pilon to pilon.fasta [pilon] Writing NODE_5820_length_554_cov_4.011547:1-554 changes to pilon.changes [pilon] Writing updated NODE_5820_length_554_cov_4.011547_pilon to pilon.fasta [pilon] Writing NODE_5821_length_554_cov_3.678984:1-554 changes to pilon.changes [pilon] Writing updated NODE_5821_length_554_cov_3.678984_pilon to pilon.fasta [pilon] Writing NODE_5822_length_554_cov_2.685912:1-554 changes to pilon.changes [pilon] Writing updated NODE_5822_length_554_cov_2.685912_pilon to pilon.fasta [pilon] Writing NODE_5823_length_554_cov_2.501155:1-554 changes to pilon.changes [pilon] Writing updated NODE_5823_length_554_cov_2.501155_pilon to pilon.fasta [pilon] Writing NODE_5824_length_554_cov_1.875289:1-554 changes to pilon.changes [pilon] Writing updated NODE_5824_length_554_cov_1.875289_pilon to pilon.fasta [pilon] Writing NODE_5825_length_554_cov_1.297921:1-554 changes to pilon.changes [pilon] Writing updated NODE_5825_length_554_cov_1.297921_pilon to pilon.fasta [pilon] Writing NODE_5826_length_554_cov_1.221709:1-554 changes to pilon.changes [pilon] Writing updated NODE_5826_length_554_cov_1.221709_pilon to pilon.fasta [pilon] Writing NODE_5827_length_553_cov_62.064815:1-553 changes to pilon.changes [pilon] Writing updated NODE_5827_length_553_cov_62.064815_pilon to pilon.fasta [pilon] Writing NODE_5828_length_553_cov_41.398148:1-553 changes to pilon.changes [pilon] Writing updated NODE_5828_length_553_cov_41.398148_pilon to pilon.fasta [pilon] Writing NODE_5829_length_553_cov_33.289352:1-553 changes to pilon.changes [pilon] Writing updated NODE_5829_length_553_cov_33.289352_pilon to pilon.fasta [pilon] Writing NODE_5830_length_553_cov_15.078704:1-553 changes to pilon.changes [pilon] Writing updated NODE_5830_length_553_cov_15.078704_pilon to pilon.fasta [pilon] Writing NODE_5831_length_553_cov_12.858796:1-553 changes to pilon.changes [pilon] Writing updated NODE_5831_length_553_cov_12.858796_pilon to pilon.fasta [pilon] Writing NODE_5832_length_553_cov_9.694444:1-553 changes to pilon.changes [pilon] Writing updated NODE_5832_length_553_cov_9.694444_pilon to pilon.fasta [pilon] Writing NODE_5833_length_553_cov_3.372685:1-553 changes to pilon.changes [pilon] Writing updated NODE_5833_length_553_cov_3.372685_pilon to pilon.fasta [pilon] Writing NODE_5834_length_553_cov_1.405093:1-553 changes to pilon.changes [pilon] Writing updated NODE_5834_length_553_cov_1.405093_pilon to pilon.fasta [pilon] Writing NODE_5835_length_552_cov_37.178654:1-552 changes to pilon.changes [pilon] Writing updated NODE_5835_length_552_cov_37.178654_pilon to pilon.fasta [pilon] Writing NODE_5836_length_552_cov_27.018561:1-552 changes to pilon.changes [pilon] Writing updated NODE_5836_length_552_cov_27.018561_pilon to pilon.fasta [pilon] Writing NODE_5837_length_552_cov_26.083527:1-552 changes to pilon.changes [pilon] Writing updated NODE_5837_length_552_cov_26.083527_pilon to pilon.fasta [pilon] Writing NODE_5838_length_552_cov_25.770302:1-552 changes to pilon.changes [pilon] Writing updated NODE_5838_length_552_cov_25.770302_pilon to pilon.fasta [pilon] Writing NODE_5839_length_552_cov_21.893271:1-552 changes to pilon.changes [pilon] Writing updated NODE_5839_length_552_cov_21.893271_pilon to pilon.fasta [pilon] Writing NODE_5840_length_552_cov_20.638051:1-552 changes to pilon.changes [pilon] Writing updated NODE_5840_length_552_cov_20.638051_pilon to pilon.fasta [pilon] Writing NODE_5841_length_552_cov_20.310905:1-552 changes to pilon.changes [pilon] Writing updated NODE_5841_length_552_cov_20.310905_pilon to pilon.fasta [pilon] Writing NODE_5842_length_552_cov_18.559165:1-552 changes to pilon.changes [pilon] Writing updated NODE_5842_length_552_cov_18.559165_pilon to pilon.fasta [pilon] Writing NODE_5843_length_552_cov_16.730858:1-552 changes to pilon.changes [pilon] Writing updated NODE_5843_length_552_cov_16.730858_pilon to pilon.fasta [pilon] Writing NODE_5844_length_552_cov_12.410673:1-552 changes to pilon.changes [pilon] Writing updated NODE_5844_length_552_cov_12.410673_pilon to pilon.fasta [pilon] Writing NODE_5845_length_552_cov_3.716937:1-552 changes to pilon.changes [pilon] Writing updated NODE_5845_length_552_cov_3.716937_pilon to pilon.fasta [pilon] Writing NODE_5846_length_552_cov_2.902552:1-552 changes to pilon.changes [pilon] Writing updated NODE_5846_length_552_cov_2.902552_pilon to pilon.fasta [pilon] Writing NODE_5847_length_552_cov_2.452436:1-552 changes to pilon.changes [pilon] Writing updated NODE_5847_length_552_cov_2.452436_pilon to pilon.fasta [pilon] Writing NODE_5848_length_552_cov_1.781903:1-552 changes to pilon.changes [pilon] Writing updated NODE_5848_length_552_cov_1.781903_pilon to pilon.fasta [pilon] Writing NODE_5849_length_552_cov_0.621810:1-552 changes to pilon.changes [pilon] Writing updated NODE_5849_length_552_cov_0.621810_pilon to pilon.fasta [pilon] Writing NODE_5850_length_551_cov_48.311628:1-551 changes to pilon.changes [pilon] Writing updated NODE_5850_length_551_cov_48.311628_pilon to pilon.fasta [pilon] Writing NODE_5851_length_551_cov_24.927907:1-551 changes to pilon.changes [pilon] Writing updated NODE_5851_length_551_cov_24.927907_pilon to pilon.fasta [pilon] Writing NODE_5852_length_551_cov_17.690698:1-551 changes to pilon.changes [pilon] Writing updated NODE_5852_length_551_cov_17.690698_pilon to pilon.fasta [pilon] Writing NODE_5853_length_551_cov_17.493023:1-551 changes to pilon.changes [pilon] Writing updated NODE_5853_length_551_cov_17.493023_pilon to pilon.fasta [pilon] Writing NODE_5854_length_551_cov_11.223256:1-551 changes to pilon.changes [pilon] Writing updated NODE_5854_length_551_cov_11.223256_pilon to pilon.fasta [pilon] Writing NODE_5855_length_551_cov_5.353488:1-551 changes to pilon.changes [pilon] Writing updated NODE_5855_length_551_cov_5.353488_pilon to pilon.fasta [pilon] Writing NODE_5856_length_551_cov_2.590698:1-551 changes to pilon.changes [pilon] Writing updated NODE_5856_length_551_cov_2.590698_pilon to pilon.fasta [pilon] Writing NODE_5857_length_551_cov_2.160465:1-551 changes to pilon.changes [pilon] Writing updated NODE_5857_length_551_cov_2.160465_pilon to pilon.fasta [pilon] Writing NODE_5858_length_551_cov_2.155814:1-551 changes to pilon.changes [pilon] Writing updated NODE_5858_length_551_cov_2.155814_pilon to pilon.fasta [pilon] Writing NODE_5859_length_551_cov_1.862791:1-551 changes to pilon.changes [pilon] Writing updated NODE_5859_length_551_cov_1.862791_pilon to pilon.fasta [pilon] Writing NODE_5860_length_551_cov_1.272093:1-551 changes to pilon.changes [pilon] Writing updated NODE_5860_length_551_cov_1.272093_pilon to pilon.fasta [pilon] Writing NODE_5861_length_551_cov_0.948837:1-551 changes to pilon.changes [pilon] Writing updated NODE_5861_length_551_cov_0.948837_pilon to pilon.fasta [pilon] Writing NODE_5862_length_551_cov_0.783721:1-551 changes to pilon.changes [pilon] Writing updated NODE_5862_length_551_cov_0.783721_pilon to pilon.fasta [pilon] Writing NODE_5863_length_551_cov_0.662791:1-551 changes to pilon.changes [pilon] Writing updated NODE_5863_length_551_cov_0.662791_pilon to pilon.fasta [pilon] Writing NODE_5864_length_551_cov_0.362791:1-551 changes to pilon.changes [pilon] Writing updated NODE_5864_length_551_cov_0.362791_pilon to pilon.fasta [pilon] Writing NODE_5865_length_550_cov_21.545455:1-550 changes to pilon.changes [pilon] Writing updated NODE_5865_length_550_cov_21.545455_pilon to pilon.fasta [pilon] Writing NODE_5866_length_550_cov_12.613054:1-550 changes to pilon.changes [pilon] Writing updated NODE_5866_length_550_cov_12.613054_pilon to pilon.fasta [pilon] Writing NODE_5867_length_550_cov_3.904429:1-550 changes to pilon.changes [pilon] Writing updated NODE_5867_length_550_cov_3.904429_pilon to pilon.fasta [pilon] Writing NODE_5868_length_550_cov_3.011655:1-550 changes to pilon.changes [pilon] Writing updated NODE_5868_length_550_cov_3.011655_pilon to pilon.fasta [pilon] Writing NODE_5869_length_550_cov_2.480186:1-550 changes to pilon.changes [pilon] Writing updated NODE_5869_length_550_cov_2.480186_pilon to pilon.fasta [pilon] Writing NODE_5870_length_550_cov_1.769231:1-550 changes to pilon.changes [pilon] Writing updated NODE_5870_length_550_cov_1.769231_pilon to pilon.fasta [pilon] Writing NODE_5871_length_550_cov_0.766900:1-550 changes to pilon.changes [pilon] Writing updated NODE_5871_length_550_cov_0.766900_pilon to pilon.fasta [pilon] Writing NODE_5872_length_550_cov_0.585082:1-550 changes to pilon.changes [pilon] Writing updated NODE_5872_length_550_cov_0.585082_pilon to pilon.fasta [pilon] Writing NODE_5873_length_549_cov_62.014019:1-549 changes to pilon.changes [pilon] Writing updated NODE_5873_length_549_cov_62.014019_pilon to pilon.fasta [pilon] Writing NODE_5874_length_549_cov_51.850467:1-549 changes to pilon.changes [pilon] Writing updated NODE_5874_length_549_cov_51.850467_pilon to pilon.fasta [pilon] Writing NODE_5875_length_549_cov_36.733645:1-549 changes to pilon.changes [pilon] Writing updated NODE_5875_length_549_cov_36.733645_pilon to pilon.fasta [pilon] Writing NODE_5876_length_549_cov_21.906542:1-549 changes to pilon.changes [pilon] Writing updated NODE_5876_length_549_cov_21.906542_pilon to pilon.fasta [pilon] Writing NODE_5877_length_549_cov_19.233645:1-549 changes to pilon.changes [pilon] Writing updated NODE_5877_length_549_cov_19.233645_pilon to pilon.fasta [pilon] Writing NODE_5878_length_549_cov_19.205607:1-549 changes to pilon.changes [pilon] Writing updated NODE_5878_length_549_cov_19.205607_pilon to pilon.fasta [pilon] Writing NODE_5879_length_549_cov_18.570093:1-549 changes to pilon.changes [pilon] Writing updated NODE_5879_length_549_cov_18.570093_pilon to pilon.fasta [pilon] Writing NODE_5880_length_549_cov_17.518692:1-549 changes to pilon.changes [pilon] Writing updated NODE_5880_length_549_cov_17.518692_pilon to pilon.fasta [pilon] Writing NODE_5881_length_549_cov_16.946262:1-549 changes to pilon.changes [pilon] Writing updated NODE_5881_length_549_cov_16.946262_pilon to pilon.fasta [pilon] Writing NODE_5882_length_549_cov_15.471963:1-549 changes to pilon.changes [pilon] Writing updated NODE_5882_length_549_cov_15.471963_pilon to pilon.fasta [pilon] Writing NODE_5883_length_549_cov_15.394860:1-549 changes to pilon.changes [pilon] Writing updated NODE_5883_length_549_cov_15.394860_pilon to pilon.fasta [pilon] Writing NODE_5884_length_549_cov_12.296729:1-549 changes to pilon.changes [pilon] Writing updated NODE_5884_length_549_cov_12.296729_pilon to pilon.fasta [pilon] Writing NODE_5885_length_549_cov_9.247664:1-549 changes to pilon.changes [pilon] Writing updated NODE_5885_length_549_cov_9.247664_pilon to pilon.fasta [pilon] Writing NODE_5886_length_549_cov_8.317757:1-549 changes to pilon.changes [pilon] Writing updated NODE_5886_length_549_cov_8.317757_pilon to pilon.fasta [pilon] Writing NODE_5887_length_549_cov_2.941589:1-549 changes to pilon.changes [pilon] Writing updated NODE_5887_length_549_cov_2.941589_pilon to pilon.fasta [pilon] Writing NODE_5888_length_549_cov_2.848131:1-549 changes to pilon.changes [pilon] Writing updated NODE_5888_length_549_cov_2.848131_pilon to pilon.fasta [pilon] Writing NODE_5889_length_549_cov_1.018692:1-549 changes to pilon.changes [pilon] Writing updated NODE_5889_length_549_cov_1.018692_pilon to pilon.fasta [pilon] Writing NODE_5890_length_548_cov_38.229508:1-548 changes to pilon.changes [pilon] Writing updated NODE_5890_length_548_cov_38.229508_pilon to pilon.fasta [pilon] Writing NODE_5891_length_548_cov_31.309133:1-548 changes to pilon.changes [pilon] Writing updated NODE_5891_length_548_cov_31.309133_pilon to pilon.fasta [pilon] Writing NODE_5892_length_548_cov_27.220141:1-548 changes to pilon.changes [pilon] Writing updated NODE_5892_length_548_cov_27.220141_pilon to pilon.fasta [pilon] Writing NODE_5893_length_548_cov_21.416862:1-548 changes to pilon.changes [pilon] Writing updated NODE_5893_length_548_cov_21.416862_pilon to pilon.fasta [pilon] Writing NODE_5894_length_548_cov_15.587822:1-548 changes to pilon.changes [pilon] Writing updated NODE_5894_length_548_cov_15.587822_pilon to pilon.fasta [pilon] Writing NODE_5895_length_548_cov_9.655738:1-548 changes to pilon.changes [pilon] Writing updated NODE_5895_length_548_cov_9.655738_pilon to pilon.fasta [pilon] Writing NODE_5896_length_548_cov_9.374707:1-548 changes to pilon.changes [pilon] Writing updated NODE_5896_length_548_cov_9.374707_pilon to pilon.fasta [pilon] Writing NODE_5897_length_548_cov_5.018735:1-548 changes to pilon.changes [pilon] Writing updated NODE_5897_length_548_cov_5.018735_pilon to pilon.fasta [pilon] Writing NODE_5898_length_548_cov_2.892272:1-548 changes to pilon.changes [pilon] Writing updated NODE_5898_length_548_cov_2.892272_pilon to pilon.fasta [pilon] Writing NODE_5899_length_548_cov_2.121780:1-548 changes to pilon.changes [pilon] Writing updated NODE_5899_length_548_cov_2.121780_pilon to pilon.fasta [pilon] Writing NODE_5900_length_548_cov_1.491803:1-548 changes to pilon.changes [pilon] Writing updated NODE_5900_length_548_cov_1.491803_pilon to pilon.fasta [pilon] Writing NODE_5901_length_548_cov_1.313817:1-548 changes to pilon.changes [pilon] Writing updated NODE_5901_length_548_cov_1.313817_pilon to pilon.fasta [pilon] Writing NODE_5902_length_548_cov_0.882904:1-548 changes to pilon.changes [pilon] Writing updated NODE_5902_length_548_cov_0.882904_pilon to pilon.fasta [pilon] Writing NODE_5903_length_548_cov_0.793911:1-548 changes to pilon.changes [pilon] Writing updated NODE_5903_length_548_cov_0.793911_pilon to pilon.fasta [pilon] Writing NODE_5904_length_547_cov_36.521127:1-547 changes to pilon.changes [pilon] Writing updated NODE_5904_length_547_cov_36.521127_pilon to pilon.fasta [pilon] Writing NODE_5905_length_547_cov_31.410798:1-547 changes to pilon.changes [pilon] Writing updated NODE_5905_length_547_cov_31.410798_pilon to pilon.fasta [pilon] Writing NODE_5906_length_547_cov_20.903756:1-547 changes to pilon.changes [pilon] Writing updated NODE_5906_length_547_cov_20.903756_pilon to pilon.fasta [pilon] Writing NODE_5907_length_547_cov_16.394366:1-547 changes to pilon.changes [pilon] Writing updated NODE_5907_length_547_cov_16.394366_pilon to pilon.fasta [pilon] Writing NODE_5908_length_547_cov_12.384977:1-547 changes to pilon.changes [pilon] Writing updated NODE_5908_length_547_cov_12.384977_pilon to pilon.fasta [pilon] Writing NODE_5909_length_547_cov_11.323944:1-547 changes to pilon.changes [pilon] Writing updated NODE_5909_length_547_cov_11.323944_pilon to pilon.fasta [pilon] Writing NODE_5910_length_547_cov_5.441315:1-547 changes to pilon.changes [pilon] Writing updated NODE_5910_length_547_cov_5.441315_pilon to pilon.fasta [pilon] Writing NODE_5911_length_547_cov_3.906103:1-547 changes to pilon.changes [pilon] Writing updated NODE_5911_length_547_cov_3.906103_pilon to pilon.fasta [pilon] Writing NODE_5912_length_547_cov_1.870892:1-547 changes to pilon.changes [pilon] Writing updated NODE_5912_length_547_cov_1.870892_pilon to pilon.fasta [pilon] Writing NODE_5913_length_547_cov_1.673709:1-547 changes to pilon.changes [pilon] Writing updated NODE_5913_length_547_cov_1.673709_pilon to pilon.fasta [pilon] Writing NODE_5914_length_546_cov_46.235294:1-546 changes to pilon.changes [pilon] Writing updated NODE_5914_length_546_cov_46.235294_pilon to pilon.fasta [pilon] Writing NODE_5915_length_546_cov_38.371765:1-546 changes to pilon.changes [pilon] Writing updated NODE_5915_length_546_cov_38.371765_pilon to pilon.fasta [pilon] Writing NODE_5916_length_546_cov_25.941176:1-546 changes to pilon.changes [pilon] Writing updated NODE_5916_length_546_cov_25.941176_pilon to pilon.fasta [pilon] Writing NODE_5917_length_546_cov_22.400000:1-546 changes to pilon.changes [pilon] Writing updated NODE_5917_length_546_cov_22.400000_pilon to pilon.fasta [pilon] Writing NODE_5918_length_546_cov_19.134118:1-546 changes to pilon.changes [pilon] Writing updated NODE_5918_length_546_cov_19.134118_pilon to pilon.fasta [pilon] Writing NODE_5919_length_546_cov_18.632941:1-546 changes to pilon.changes [pilon] Writing updated NODE_5919_length_546_cov_18.632941_pilon to pilon.fasta [pilon] Writing NODE_5920_length_546_cov_15.637647:1-546 changes to pilon.changes [pilon] Writing updated NODE_5920_length_546_cov_15.637647_pilon to pilon.fasta [pilon] Writing NODE_5921_length_546_cov_14.682353:1-546 changes to pilon.changes [pilon] Writing updated NODE_5921_length_546_cov_14.682353_pilon to pilon.fasta [pilon] Writing NODE_5922_length_546_cov_13.075294:1-546 changes to pilon.changes [pilon] Writing updated NODE_5922_length_546_cov_13.075294_pilon to pilon.fasta [pilon] Writing NODE_5923_length_546_cov_12.383529:1-546 changes to pilon.changes [pilon] Writing updated NODE_5923_length_546_cov_12.383529_pilon to pilon.fasta [pilon] Writing NODE_5924_length_546_cov_12.101176:1-546 changes to pilon.changes [pilon] Writing updated NODE_5924_length_546_cov_12.101176_pilon to pilon.fasta [pilon] Writing NODE_5925_length_546_cov_3.390588:1-546 changes to pilon.changes [pilon] Writing updated NODE_5925_length_546_cov_3.390588_pilon to pilon.fasta [pilon] Writing NODE_5926_length_546_cov_2.244706:1-546 changes to pilon.changes [pilon] Writing updated NODE_5926_length_546_cov_2.244706_pilon to pilon.fasta [pilon] Writing NODE_5927_length_546_cov_2.200000:1-546 changes to pilon.changes [pilon] Writing updated NODE_5927_length_546_cov_2.200000_pilon to pilon.fasta [pilon] Writing NODE_5928_length_546_cov_1.835294:1-546 changes to pilon.changes [pilon] Writing updated NODE_5928_length_546_cov_1.835294_pilon to pilon.fasta [pilon] Writing NODE_5929_length_546_cov_1.501176:1-546 changes to pilon.changes [pilon] Writing updated NODE_5929_length_546_cov_1.501176_pilon to pilon.fasta [pilon] Writing NODE_5930_length_546_cov_1.327059:1-546 changes to pilon.changes [pilon] Writing updated NODE_5930_length_546_cov_1.327059_pilon to pilon.fasta [pilon] Writing NODE_5931_length_546_cov_0.722353:1-546 changes to pilon.changes [pilon] Writing updated NODE_5931_length_546_cov_0.722353_pilon to pilon.fasta [pilon] Writing NODE_5932_length_545_cov_57.341981:1-545 changes to pilon.changes [pilon] Writing updated NODE_5932_length_545_cov_57.341981_pilon to pilon.fasta [pilon] Writing NODE_5933_length_545_cov_50.860849:1-545 changes to pilon.changes [pilon] Writing updated NODE_5933_length_545_cov_50.860849_pilon to pilon.fasta [pilon] Writing NODE_5934_length_545_cov_38.870283:1-545 changes to pilon.changes [pilon] Writing updated NODE_5934_length_545_cov_38.870283_pilon to pilon.fasta [pilon] Writing NODE_5935_length_545_cov_34.870283:1-545 changes to pilon.changes [pilon] Writing updated NODE_5935_length_545_cov_34.870283_pilon to pilon.fasta [pilon] Writing NODE_5936_length_545_cov_31.084906:1-545 changes to pilon.changes [pilon] Writing updated NODE_5936_length_545_cov_31.084906_pilon to pilon.fasta [pilon] Writing NODE_5937_length_545_cov_23.115566:1-545 changes to pilon.changes [pilon] Writing updated NODE_5937_length_545_cov_23.115566_pilon to pilon.fasta [pilon] Writing NODE_5938_length_545_cov_17.007075:1-545 changes to pilon.changes [pilon] Writing updated NODE_5938_length_545_cov_17.007075_pilon to pilon.fasta [pilon] Writing NODE_5939_length_545_cov_16.377358:1-545 changes to pilon.changes [pilon] Writing updated NODE_5939_length_545_cov_16.377358_pilon to pilon.fasta [pilon] Writing NODE_5940_length_545_cov_14.535377:1-545 changes to pilon.changes [pilon] Writing updated NODE_5940_length_545_cov_14.535377_pilon to pilon.fasta [pilon] Writing NODE_5941_length_545_cov_13.629717:1-545 changes to pilon.changes [pilon] Writing updated NODE_5941_length_545_cov_13.629717_pilon to pilon.fasta [pilon] Writing NODE_5942_length_545_cov_10.799528:1-545 changes to pilon.changes [pilon] Writing updated NODE_5942_length_545_cov_10.799528_pilon to pilon.fasta [pilon] Writing NODE_5943_length_545_cov_9.372642:1-545 changes to pilon.changes [pilon] Writing updated NODE_5943_length_545_cov_9.372642_pilon to pilon.fasta [pilon] Writing NODE_5944_length_545_cov_3.995283:1-545 changes to pilon.changes [pilon] Writing updated NODE_5944_length_545_cov_3.995283_pilon to pilon.fasta [pilon] Writing NODE_5945_length_545_cov_1.417453:1-545 changes to pilon.changes [pilon] Writing updated NODE_5945_length_545_cov_1.417453_pilon to pilon.fasta [pilon] Writing NODE_5946_length_545_cov_1.323113:1-545 changes to pilon.changes [pilon] Writing updated NODE_5946_length_545_cov_1.323113_pilon to pilon.fasta [pilon] Writing NODE_5947_length_544_cov_51.515366:1-544 changes to pilon.changes [pilon] Writing updated NODE_5947_length_544_cov_51.515366_pilon to pilon.fasta [pilon] Writing NODE_5948_length_544_cov_43.716312:1-544 changes to pilon.changes [pilon] Writing updated NODE_5948_length_544_cov_43.716312_pilon to pilon.fasta [pilon] Writing NODE_5949_length_544_cov_36.387707:1-544 changes to pilon.changes [pilon] Writing updated NODE_5949_length_544_cov_36.387707_pilon to pilon.fasta [pilon] Writing NODE_5950_length_544_cov_32.716312:1-544 changes to pilon.changes [pilon] Writing updated NODE_5950_length_544_cov_32.716312_pilon to pilon.fasta [pilon] Writing NODE_5951_length_544_cov_30.962175:1-544 changes to pilon.changes [pilon] Writing updated NODE_5951_length_544_cov_30.962175_pilon to pilon.fasta [pilon] Writing NODE_5952_length_544_cov_19.243499:1-544 changes to pilon.changes [pilon] Writing updated NODE_5952_length_544_cov_19.243499_pilon to pilon.fasta [pilon] Writing NODE_5953_length_544_cov_18.101655:1-544 changes to pilon.changes [pilon] Writing updated NODE_5953_length_544_cov_18.101655_pilon to pilon.fasta [pilon] Writing NODE_5954_length_544_cov_17.581560:1-544 changes to pilon.changes [pilon] Writing updated NODE_5954_length_544_cov_17.581560_pilon to pilon.fasta [pilon] Writing NODE_5955_length_544_cov_16.666667:1-544 changes to pilon.changes [pilon] Writing updated NODE_5955_length_544_cov_16.666667_pilon to pilon.fasta [pilon] Writing NODE_5956_length_544_cov_15.718676:1-544 changes to pilon.changes [pilon] Writing updated NODE_5956_length_544_cov_15.718676_pilon to pilon.fasta [pilon] Writing NODE_5957_length_544_cov_10.349882:1-544 changes to pilon.changes [pilon] Writing updated NODE_5957_length_544_cov_10.349882_pilon to pilon.fasta [pilon] Writing NODE_5958_length_544_cov_6.794326:1-544 changes to pilon.changes [pilon] Writing updated NODE_5958_length_544_cov_6.794326_pilon to pilon.fasta [pilon] Writing NODE_5959_length_544_cov_5.394799:1-544 changes to pilon.changes [pilon] Writing updated NODE_5959_length_544_cov_5.394799_pilon to pilon.fasta [pilon] Writing NODE_5960_length_544_cov_2.683215:1-544 changes to pilon.changes [pilon] Writing updated NODE_5960_length_544_cov_2.683215_pilon to pilon.fasta [pilon] Writing NODE_5961_length_544_cov_1.879433:1-544 changes to pilon.changes [pilon] Writing updated NODE_5961_length_544_cov_1.879433_pilon to pilon.fasta [pilon] Writing NODE_5962_length_544_cov_1.591017:1-544 changes to pilon.changes [pilon] Writing updated NODE_5962_length_544_cov_1.591017_pilon to pilon.fasta [pilon] Writing NODE_5963_length_544_cov_1.144208:1-544 changes to pilon.changes [pilon] Writing updated NODE_5963_length_544_cov_1.144208_pilon to pilon.fasta [pilon] Writing NODE_5964_length_544_cov_1.004728:1-544 changes to pilon.changes [pilon] Writing updated NODE_5964_length_544_cov_1.004728_pilon to pilon.fasta [pilon] Writing NODE_5965_length_544_cov_0.917258:1-544 changes to pilon.changes [pilon] Writing updated NODE_5965_length_544_cov_0.917258_pilon to pilon.fasta [pilon] Writing NODE_5966_length_543_cov_32.798578:1-543 changes to pilon.changes [pilon] Writing updated NODE_5966_length_543_cov_32.798578_pilon to pilon.fasta [pilon] Writing NODE_5967_length_543_cov_27.864929:1-543 changes to pilon.changes [pilon] Writing updated NODE_5967_length_543_cov_27.864929_pilon to pilon.fasta [pilon] Writing NODE_5968_length_543_cov_26.618483:1-543 changes to pilon.changes [pilon] Writing updated NODE_5968_length_543_cov_26.618483_pilon to pilon.fasta [pilon] Writing NODE_5969_length_543_cov_23.417062:1-543 changes to pilon.changes [pilon] Writing updated NODE_5969_length_543_cov_23.417062_pilon to pilon.fasta [pilon] Writing NODE_5970_length_543_cov_22.907583:1-543 changes to pilon.changes [pilon] Writing updated NODE_5970_length_543_cov_22.907583_pilon to pilon.fasta [pilon] Writing NODE_5971_length_543_cov_21.092417:1-543 changes to pilon.changes [pilon] Writing updated NODE_5971_length_543_cov_21.092417_pilon to pilon.fasta [pilon] Writing NODE_5972_length_543_cov_17.191943:1-543 changes to pilon.changes [pilon] Writing updated NODE_5972_length_543_cov_17.191943_pilon to pilon.fasta [pilon] Writing NODE_5973_length_543_cov_16.030806:1-543 changes to pilon.changes [pilon] Writing updated NODE_5973_length_543_cov_16.030806_pilon to pilon.fasta [pilon] Writing NODE_5974_length_543_cov_14.246445:1-543 changes to pilon.changes [pilon] Writing updated NODE_5974_length_543_cov_14.246445_pilon to pilon.fasta [pilon] Writing NODE_5975_length_543_cov_12.078199:1-543 changes to pilon.changes [pilon] Writing updated NODE_5975_length_543_cov_12.078199_pilon to pilon.fasta [pilon] Writing NODE_5976_length_543_cov_8.954976:1-543 changes to pilon.changes [pilon] Writing updated NODE_5976_length_543_cov_8.954976_pilon to pilon.fasta [pilon] Writing NODE_5977_length_543_cov_1.253555:1-543 changes to pilon.changes [pilon] Writing updated NODE_5977_length_543_cov_1.253555_pilon to pilon.fasta [pilon] Writing NODE_5978_length_543_cov_0.767773:1-543 changes to pilon.changes [pilon] Writing updated NODE_5978_length_543_cov_0.767773_pilon to pilon.fasta [pilon] Writing NODE_5979_length_542_cov_50.707838:1-542 changes to pilon.changes [pilon] Writing updated NODE_5979_length_542_cov_50.707838_pilon to pilon.fasta [pilon] Writing NODE_5980_length_542_cov_35.353919:1-542 changes to pilon.changes [pilon] Writing updated NODE_5980_length_542_cov_35.353919_pilon to pilon.fasta [pilon] Writing NODE_5981_length_542_cov_33.228029:1-542 changes to pilon.changes [pilon] Writing updated NODE_5981_length_542_cov_33.228029_pilon to pilon.fasta [pilon] Writing NODE_5982_length_542_cov_31.814727:1-542 changes to pilon.changes [pilon] Writing updated NODE_5982_length_542_cov_31.814727_pilon to pilon.fasta [pilon] Writing NODE_5983_length_542_cov_28.693587:1-542 changes to pilon.changes [pilon] Writing updated NODE_5983_length_542_cov_28.693587_pilon to pilon.fasta [pilon] Writing NODE_5984_length_542_cov_28.527316:1-542 changes to pilon.changes [pilon] Writing updated NODE_5984_length_542_cov_28.527316_pilon to pilon.fasta [pilon] Writing NODE_5985_length_542_cov_14.921615:1-542 changes to pilon.changes [pilon] Writing updated NODE_5985_length_542_cov_14.921615_pilon to pilon.fasta [pilon] Writing NODE_5986_length_542_cov_13.586698:1-542 changes to pilon.changes [pilon] Writing updated NODE_5986_length_542_cov_13.586698_pilon to pilon.fasta [pilon] Writing NODE_5987_length_542_cov_11.546318:1-542 changes to pilon.changes [pilon] Writing updated NODE_5987_length_542_cov_11.546318_pilon to pilon.fasta [pilon] Writing NODE_5988_length_542_cov_10.220903:1-542 changes to pilon.changes [pilon] Writing updated NODE_5988_length_542_cov_10.220903_pilon to pilon.fasta [pilon] Writing NODE_5989_length_542_cov_5.173397:1-542 changes to pilon.changes [pilon] Writing updated NODE_5989_length_542_cov_5.173397_pilon to pilon.fasta [pilon] Writing NODE_5990_length_542_cov_1.377672:1-542 changes to pilon.changes [pilon] Writing updated NODE_5990_length_542_cov_1.377672_pilon to pilon.fasta [pilon] Writing NODE_5991_length_542_cov_0.641330:1-542 changes to pilon.changes [pilon] Writing updated NODE_5991_length_542_cov_0.641330_pilon to pilon.fasta [pilon] Writing NODE_5992_length_541_cov_38.240476:1-541 changes to pilon.changes [pilon] Writing updated NODE_5992_length_541_cov_38.240476_pilon to pilon.fasta [pilon] Writing NODE_5993_length_541_cov_34.297619:1-541 changes to pilon.changes [pilon] Writing updated NODE_5993_length_541_cov_34.297619_pilon to pilon.fasta [pilon] Writing NODE_5994_length_541_cov_28.371429:1-541 changes to pilon.changes [pilon] Writing updated NODE_5994_length_541_cov_28.371429_pilon to pilon.fasta [pilon] Writing NODE_5995_length_541_cov_2.923810:1-541 changes to pilon.changes [pilon] Writing updated NODE_5995_length_541_cov_2.923810_pilon to pilon.fasta [pilon] Writing NODE_5996_length_541_cov_1.471429:1-541 changes to pilon.changes [pilon] Writing updated NODE_5996_length_541_cov_1.471429_pilon to pilon.fasta [pilon] Writing NODE_5997_length_541_cov_1.157143:1-541 changes to pilon.changes [pilon] Writing updated NODE_5997_length_541_cov_1.157143_pilon to pilon.fasta [pilon] Writing NODE_5998_length_541_cov_1.069048:1-541 changes to pilon.changes [pilon] Writing updated NODE_5998_length_541_cov_1.069048_pilon to pilon.fasta [pilon] Writing NODE_5999_length_541_cov_0.947619:1-541 changes to pilon.changes [pilon] Writing updated NODE_5999_length_541_cov_0.947619_pilon to pilon.fasta [pilon] Writing NODE_6000_length_540_cov_43.656325:1-540 changes to pilon.changes [pilon] Writing updated NODE_6000_length_540_cov_43.656325_pilon to pilon.fasta [pilon] Writing NODE_6001_length_540_cov_34.353222:1-540 changes to pilon.changes [pilon] Writing updated NODE_6001_length_540_cov_34.353222_pilon to pilon.fasta [pilon] Writing NODE_6002_length_540_cov_28.637232:1-540 changes to pilon.changes [pilon] Writing updated NODE_6002_length_540_cov_28.637232_pilon to pilon.fasta [pilon] Writing NODE_6003_length_540_cov_25.983294:1-540 changes to pilon.changes [pilon] Writing updated NODE_6003_length_540_cov_25.983294_pilon to pilon.fasta [pilon] Writing NODE_6004_length_540_cov_19.291169:1-540 changes to pilon.changes [pilon] Writing updated NODE_6004_length_540_cov_19.291169_pilon to pilon.fasta [pilon] Writing NODE_6005_length_540_cov_17.009547:1-540 changes to pilon.changes [pilon] Writing updated NODE_6005_length_540_cov_17.009547_pilon to pilon.fasta [pilon] Writing NODE_6006_length_540_cov_14.792363:1-540 changes to pilon.changes [pilon] Writing updated NODE_6006_length_540_cov_14.792363_pilon to pilon.fasta [pilon] Writing NODE_6007_length_540_cov_14.181384:1-540 changes to pilon.changes [pilon] Writing updated NODE_6007_length_540_cov_14.181384_pilon to pilon.fasta [pilon] Writing NODE_6008_length_540_cov_12.114558:1-540 changes to pilon.changes [pilon] Writing updated NODE_6008_length_540_cov_12.114558_pilon to pilon.fasta [pilon] Writing NODE_6009_length_540_cov_11.639618:1-540 changes to pilon.changes [pilon] Writing updated NODE_6009_length_540_cov_11.639618_pilon to pilon.fasta [pilon] Writing NODE_6010_length_540_cov_10.687351:1-540 changes to pilon.changes [pilon] Writing updated NODE_6010_length_540_cov_10.687351_pilon to pilon.fasta [pilon] Writing NODE_6011_length_540_cov_6.687351:1-540 changes to pilon.changes [pilon] Writing updated NODE_6011_length_540_cov_6.687351_pilon to pilon.fasta [pilon] Writing NODE_6012_length_540_cov_5.727924:1-540 changes to pilon.changes [pilon] Writing updated NODE_6012_length_540_cov_5.727924_pilon to pilon.fasta [pilon] Writing NODE_6013_length_540_cov_5.694511:1-540 changes to pilon.changes [pilon] Writing updated NODE_6013_length_540_cov_5.694511_pilon to pilon.fasta [pilon] Writing NODE_6014_length_540_cov_0.813842:1-540 changes to pilon.changes [pilon] Writing updated NODE_6014_length_540_cov_0.813842_pilon to pilon.fasta [pilon] Writing NODE_6015_length_539_cov_62.255981:1-539 changes to pilon.changes [pilon] Writing updated NODE_6015_length_539_cov_62.255981_pilon to pilon.fasta [pilon] Writing NODE_6016_length_539_cov_43.110048:1-539 changes to pilon.changes [pilon] Writing updated NODE_6016_length_539_cov_43.110048_pilon to pilon.fasta [pilon] Writing NODE_6017_length_539_cov_35.885167:1-539 changes to pilon.changes [pilon] Writing updated NODE_6017_length_539_cov_35.885167_pilon to pilon.fasta [pilon] Writing NODE_6018_length_539_cov_25.031100:1-539 changes to pilon.changes [pilon] Writing updated NODE_6018_length_539_cov_25.031100_pilon to pilon.fasta [pilon] Writing NODE_6019_length_539_cov_23.925837:1-539 changes to pilon.changes [pilon] Writing updated NODE_6019_length_539_cov_23.925837_pilon to pilon.fasta [pilon] Writing NODE_6020_length_539_cov_21.612440:1-539 changes to pilon.changes [pilon] Writing updated NODE_6020_length_539_cov_21.612440_pilon to pilon.fasta [pilon] Writing NODE_6021_length_539_cov_19.990431:1-539 changes to pilon.changes [pilon] Writing updated NODE_6021_length_539_cov_19.990431_pilon to pilon.fasta [pilon] Writing NODE_6022_length_539_cov_19.301435:1-539 changes to pilon.changes [pilon] Writing updated NODE_6022_length_539_cov_19.301435_pilon to pilon.fasta [pilon] Writing NODE_6023_length_539_cov_12.145933:1-539 changes to pilon.changes [pilon] Writing updated NODE_6023_length_539_cov_12.145933_pilon to pilon.fasta [pilon] Writing NODE_6024_length_539_cov_1.688995:1-539 changes to pilon.changes [pilon] Writing updated NODE_6024_length_539_cov_1.688995_pilon to pilon.fasta [pilon] Writing NODE_6025_length_539_cov_1.444976:1-539 changes to pilon.changes [pilon] Writing updated NODE_6025_length_539_cov_1.444976_pilon to pilon.fasta [pilon] Writing NODE_6026_length_539_cov_0.648325:1-539 changes to pilon.changes [pilon] Writing updated NODE_6026_length_539_cov_0.648325_pilon to pilon.fasta [pilon] Writing NODE_6027_length_538_cov_19.177458:1-538 changes to pilon.changes [pilon] Writing updated NODE_6027_length_538_cov_19.177458_pilon to pilon.fasta [pilon] Writing NODE_6028_length_538_cov_13.112710:1-538 changes to pilon.changes [pilon] Writing updated NODE_6028_length_538_cov_13.112710_pilon to pilon.fasta [pilon] Writing NODE_6029_length_538_cov_10.326139:1-538 changes to pilon.changes [pilon] Writing updated NODE_6029_length_538_cov_10.326139_pilon to pilon.fasta [pilon] Writing NODE_6030_length_538_cov_7.515588:1-538 changes to pilon.changes [pilon] Writing updated NODE_6030_length_538_cov_7.515588_pilon to pilon.fasta [pilon] Writing NODE_6031_length_538_cov_2.333333:1-538 changes to pilon.changes [pilon] Writing updated NODE_6031_length_538_cov_2.333333_pilon to pilon.fasta [pilon] Writing NODE_6032_length_538_cov_2.079137:1-538 changes to pilon.changes [pilon] Writing updated NODE_6032_length_538_cov_2.079137_pilon to pilon.fasta [pilon] Writing NODE_6033_length_538_cov_1.961631:1-538 changes to pilon.changes [pilon] Writing updated NODE_6033_length_538_cov_1.961631_pilon to pilon.fasta [pilon] Writing NODE_6034_length_538_cov_1.163070:1-538 changes to pilon.changes [pilon] Writing updated NODE_6034_length_538_cov_1.163070_pilon to pilon.fasta [pilon] Writing NODE_6035_length_538_cov_0.868106:1-538 changes to pilon.changes [pilon] Writing updated NODE_6035_length_538_cov_0.868106_pilon to pilon.fasta [pilon] Writing NODE_6036_length_537_cov_31.016827:1-537 changes to pilon.changes [pilon] Writing updated NODE_6036_length_537_cov_31.016827_pilon to pilon.fasta [pilon] Writing NODE_6037_length_537_cov_23.855769:1-537 changes to pilon.changes [pilon] Writing updated NODE_6037_length_537_cov_23.855769_pilon to pilon.fasta [pilon] Writing NODE_6038_length_537_cov_20.137019:1-537 changes to pilon.changes [pilon] Writing updated NODE_6038_length_537_cov_20.137019_pilon to pilon.fasta [pilon] Writing NODE_6039_length_537_cov_19.569712:1-537 changes to pilon.changes [pilon] Writing updated NODE_6039_length_537_cov_19.569712_pilon to pilon.fasta [pilon] Writing NODE_6040_length_537_cov_19.144231:1-537 changes to pilon.changes [pilon] Writing updated NODE_6040_length_537_cov_19.144231_pilon to pilon.fasta [pilon] Writing NODE_6041_length_537_cov_15.271635:1-537 changes to pilon.changes [pilon] Writing updated NODE_6041_length_537_cov_15.271635_pilon to pilon.fasta [pilon] Writing NODE_6042_length_537_cov_8.750000:1-537 changes to pilon.changes [pilon] Writing updated NODE_6042_length_537_cov_8.750000_pilon to pilon.fasta [pilon] Writing NODE_6043_length_537_cov_8.622596:1-537 changes to pilon.changes [pilon] Writing updated NODE_6043_length_537_cov_8.622596_pilon to pilon.fasta [pilon] Writing NODE_6044_length_537_cov_2.757212:1-537 changes to pilon.changes [pilon] Writing updated NODE_6044_length_537_cov_2.757212_pilon to pilon.fasta [pilon] Writing NODE_6045_length_537_cov_2.274038:1-537 changes to pilon.changes [pilon] Writing updated NODE_6045_length_537_cov_2.274038_pilon to pilon.fasta [pilon] Writing NODE_6046_length_536_cov_15.828916:1-536 changes to pilon.changes [pilon] Writing updated NODE_6046_length_536_cov_15.828916_pilon to pilon.fasta [pilon] Writing NODE_6047_length_536_cov_9.286747:1-536 changes to pilon.changes [pilon] Writing updated NODE_6047_length_536_cov_9.286747_pilon to pilon.fasta [pilon] Writing NODE_6048_length_536_cov_4.026506:1-536 changes to pilon.changes [pilon] Writing updated NODE_6048_length_536_cov_4.026506_pilon to pilon.fasta [pilon] Writing NODE_6049_length_536_cov_3.180723:1-536 changes to pilon.changes [pilon] Writing updated NODE_6049_length_536_cov_3.180723_pilon to pilon.fasta [pilon] Writing NODE_6050_length_536_cov_2.773494:1-536 changes to pilon.changes [pilon] Writing updated NODE_6050_length_536_cov_2.773494_pilon to pilon.fasta [pilon] Writing NODE_6051_length_536_cov_2.689157:1-536 changes to pilon.changes [pilon] Writing updated NODE_6051_length_536_cov_2.689157_pilon to pilon.fasta [pilon] Writing NODE_6052_length_536_cov_2.272289:1-536 changes to pilon.changes [pilon] Writing updated NODE_6052_length_536_cov_2.272289_pilon to pilon.fasta [pilon] Writing NODE_6053_length_536_cov_1.204819:1-536 changes to pilon.changes [pilon] Writing updated NODE_6053_length_536_cov_1.204819_pilon to pilon.fasta [pilon] Writing NODE_6054_length_535_cov_30.765700:1-535 changes to pilon.changes [pilon] Writing updated NODE_6054_length_535_cov_30.765700_pilon to pilon.fasta [pilon] Writing NODE_6055_length_535_cov_27.830918:1-535 changes to pilon.changes [pilon] Writing updated NODE_6055_length_535_cov_27.830918_pilon to pilon.fasta [pilon] Writing NODE_6056_length_535_cov_24.625604:1-535 changes to pilon.changes [pilon] Writing updated NODE_6056_length_535_cov_24.625604_pilon to pilon.fasta [pilon] Writing NODE_6057_length_535_cov_17.159420:1-535 changes to pilon.changes [pilon] Writing updated NODE_6057_length_535_cov_17.159420_pilon to pilon.fasta [pilon] Writing NODE_6058_length_535_cov_15.173913:1-535 changes to pilon.changes [pilon] Writing updated NODE_6058_length_535_cov_15.173913_pilon to pilon.fasta [pilon] Writing NODE_6059_length_535_cov_10.072464:1-535 changes to pilon.changes [pilon] Writing updated NODE_6059_length_535_cov_10.072464_pilon to pilon.fasta [pilon] Writing NODE_6060_length_535_cov_0.973430:1-535 changes to pilon.changes [pilon] Writing updated NODE_6060_length_535_cov_0.973430_pilon to pilon.fasta [pilon] Writing NODE_6061_length_535_cov_0.589372:1-535 changes to pilon.changes [pilon] Writing updated NODE_6061_length_535_cov_0.589372_pilon to pilon.fasta [pilon] Writing NODE_6062_length_534_cov_53.670702:1-534 changes to pilon.changes [pilon] Writing updated NODE_6062_length_534_cov_53.670702_pilon to pilon.fasta [pilon] Writing NODE_6063_length_534_cov_52.101695:1-534 changes to pilon.changes [pilon] Writing updated NODE_6063_length_534_cov_52.101695_pilon to pilon.fasta [pilon] Writing NODE_6064_length_534_cov_24.138015:1-534 changes to pilon.changes [pilon] Writing updated NODE_6064_length_534_cov_24.138015_pilon to pilon.fasta [pilon] Writing NODE_6065_length_534_cov_22.377724:1-534 changes to pilon.changes [pilon] Writing updated NODE_6065_length_534_cov_22.377724_pilon to pilon.fasta [pilon] Writing NODE_6066_length_534_cov_21.898305:1-534 changes to pilon.changes [pilon] Writing updated NODE_6066_length_534_cov_21.898305_pilon to pilon.fasta [pilon] Writing NODE_6067_length_534_cov_21.699758:1-534 changes to pilon.changes [pilon] Writing updated NODE_6067_length_534_cov_21.699758_pilon to pilon.fasta [pilon] Writing NODE_6068_length_534_cov_20.958838:1-534 changes to pilon.changes [pilon] Writing updated NODE_6068_length_534_cov_20.958838_pilon to pilon.fasta [pilon] Writing NODE_6069_length_534_cov_19.433414:1-534 changes to pilon.changes [pilon] Writing updated NODE_6069_length_534_cov_19.433414_pilon to pilon.fasta [pilon] Writing NODE_6070_length_534_cov_16.278450:1-534 changes to pilon.changes [pilon] Writing updated NODE_6070_length_534_cov_16.278450_pilon to pilon.fasta [pilon] Writing NODE_6071_length_534_cov_15.600484:1-534 changes to pilon.changes [pilon] Writing updated NODE_6071_length_534_cov_15.600484_pilon to pilon.fasta [pilon] Writing NODE_6072_length_534_cov_14.641646:1-534 changes to pilon.changes [pilon] Writing updated NODE_6072_length_534_cov_14.641646_pilon to pilon.fasta [pilon] Writing NODE_6073_length_534_cov_13.636804:1-534 changes to pilon.changes [pilon] Writing updated NODE_6073_length_534_cov_13.636804_pilon to pilon.fasta [pilon] Writing NODE_6074_length_534_cov_9.464891:1-534 changes to pilon.changes [pilon] Writing updated NODE_6074_length_534_cov_9.464891_pilon to pilon.fasta [pilon] Writing NODE_6075_length_534_cov_7.479419:1-534 changes to pilon.changes [pilon] Writing updated NODE_6075_length_534_cov_7.479419_pilon to pilon.fasta [pilon] Writing NODE_6076_length_534_cov_5.745763:1-534 changes to pilon.changes [pilon] Writing updated NODE_6076_length_534_cov_5.745763_pilon to pilon.fasta [pilon] Writing NODE_6077_length_534_cov_3.968523:1-534 changes to pilon.changes [pilon] Writing updated NODE_6077_length_534_cov_3.968523_pilon to pilon.fasta [pilon] Writing NODE_6078_length_534_cov_1.997579:1-534 changes to pilon.changes [pilon] Writing updated NODE_6078_length_534_cov_1.997579_pilon to pilon.fasta [pilon] Writing NODE_6079_length_533_cov_57.368932:1-533 changes to pilon.changes [pilon] Writing updated NODE_6079_length_533_cov_57.368932_pilon to pilon.fasta [pilon] Writing NODE_6080_length_533_cov_43.242718:1-533 changes to pilon.changes [pilon] Writing updated NODE_6080_length_533_cov_43.242718_pilon to pilon.fasta [pilon] Writing NODE_6081_length_533_cov_41.233010:1-533 changes to pilon.changes [pilon] Writing updated NODE_6081_length_533_cov_41.233010_pilon to pilon.fasta [pilon] Writing NODE_6082_length_533_cov_38.752427:1-533 changes to pilon.changes [pilon] Writing updated NODE_6082_length_533_cov_38.752427_pilon to pilon.fasta [pilon] Writing NODE_6083_length_533_cov_23.817961:1-533 changes to pilon.changes [pilon] Writing updated NODE_6083_length_533_cov_23.817961_pilon to pilon.fasta [pilon] Writing NODE_6084_length_533_cov_15.652913:1-533 changes to pilon.changes [pilon] Writing updated NODE_6084_length_533_cov_15.652913_pilon to pilon.fasta [pilon] Writing NODE_6085_length_533_cov_9.196602:1-533 changes to pilon.changes [pilon] Writing updated NODE_6085_length_533_cov_9.196602_pilon to pilon.fasta [pilon] Writing NODE_6086_length_533_cov_4.932039:1-533 changes to pilon.changes [pilon] Writing updated NODE_6086_length_533_cov_4.932039_pilon to pilon.fasta [pilon] Writing NODE_6087_length_533_cov_4.742718:1-533 changes to pilon.changes [pilon] Writing updated NODE_6087_length_533_cov_4.742718_pilon to pilon.fasta [pilon] Writing NODE_6088_length_533_cov_1.720874:1-533 changes to pilon.changes [pilon] Writing updated NODE_6088_length_533_cov_1.720874_pilon to pilon.fasta [pilon] Writing NODE_6089_length_533_cov_1.478155:1-533 changes to pilon.changes [pilon] Writing updated NODE_6089_length_533_cov_1.478155_pilon to pilon.fasta [pilon] Writing NODE_6090_length_533_cov_1.461165:1-533 changes to pilon.changes [pilon] Writing updated NODE_6090_length_533_cov_1.461165_pilon to pilon.fasta [pilon] Writing NODE_6091_length_533_cov_1.016990:1-533 changes to pilon.changes [pilon] Writing updated NODE_6091_length_533_cov_1.016990_pilon to pilon.fasta [pilon] Writing NODE_6092_length_533_cov_0.980583:1-533 changes to pilon.changes [pilon] Writing updated NODE_6092_length_533_cov_0.980583_pilon to pilon.fasta [pilon] Writing NODE_6093_length_532_cov_51.532847:1-532 changes to pilon.changes [pilon] Writing updated NODE_6093_length_532_cov_51.532847_pilon to pilon.fasta [pilon] Writing NODE_6094_length_532_cov_47.364964:1-532 changes to pilon.changes [pilon] Writing updated NODE_6094_length_532_cov_47.364964_pilon to pilon.fasta [pilon] Writing NODE_6095_length_532_cov_27.880779:1-532 changes to pilon.changes [pilon] Writing updated NODE_6095_length_532_cov_27.880779_pilon to pilon.fasta [pilon] Writing NODE_6096_length_532_cov_26.659367:1-532 changes to pilon.changes [pilon] Writing updated NODE_6096_length_532_cov_26.659367_pilon to pilon.fasta [pilon] Writing NODE_6097_length_532_cov_20.839416:1-532 changes to pilon.changes [pilon] Writing updated NODE_6097_length_532_cov_20.839416_pilon to pilon.fasta [pilon] Writing NODE_6098_length_532_cov_8.761557:1-532 changes to pilon.changes [pilon] Writing updated NODE_6098_length_532_cov_8.761557_pilon to pilon.fasta [pilon] Writing NODE_6099_length_532_cov_6.754258:1-532 changes to pilon.changes [pilon] Writing updated NODE_6099_length_532_cov_6.754258_pilon to pilon.fasta [pilon] Writing NODE_6100_length_532_cov_4.413625:1-532 changes to pilon.changes [pilon] Writing updated NODE_6100_length_532_cov_4.413625_pilon to pilon.fasta [pilon] Writing NODE_6101_length_532_cov_2.338200:1-532 changes to pilon.changes [pilon] Writing updated NODE_6101_length_532_cov_2.338200_pilon to pilon.fasta [pilon] Writing NODE_6102_length_532_cov_0.734793:1-532 changes to pilon.changes [pilon] Writing updated NODE_6102_length_532_cov_0.734793_pilon to pilon.fasta [pilon] Writing NODE_6103_length_531_cov_53.621951:1-531 changes to pilon.changes [pilon] Writing updated NODE_6103_length_531_cov_53.621951_pilon to pilon.fasta [pilon] Writing NODE_6104_length_531_cov_35.331707:1-531 changes to pilon.changes [pilon] Writing updated NODE_6104_length_531_cov_35.331707_pilon to pilon.fasta [pilon] Writing NODE_6105_length_531_cov_27.978049:1-531 changes to pilon.changes [pilon] Writing updated NODE_6105_length_531_cov_27.978049_pilon to pilon.fasta [pilon] Writing NODE_6106_length_531_cov_23.370732:1-531 changes to pilon.changes [pilon] Writing updated NODE_6106_length_531_cov_23.370732_pilon to pilon.fasta [pilon] Writing NODE_6107_length_531_cov_19.063415:1-531 changes to pilon.changes [pilon] Writing updated NODE_6107_length_531_cov_19.063415_pilon to pilon.fasta [pilon] Writing NODE_6108_length_531_cov_18.800000:1-531 changes to pilon.changes [pilon] Writing updated NODE_6108_length_531_cov_18.800000_pilon to pilon.fasta [pilon] Writing NODE_6109_length_531_cov_18.448780:1-531 changes to pilon.changes [pilon] Writing updated NODE_6109_length_531_cov_18.448780_pilon to pilon.fasta [pilon] Writing NODE_6110_length_531_cov_18.207317:1-531 changes to pilon.changes [pilon] Writing updated NODE_6110_length_531_cov_18.207317_pilon to pilon.fasta [pilon] Writing NODE_6111_length_531_cov_16.887805:1-531 changes to pilon.changes [pilon] Writing updated NODE_6111_length_531_cov_16.887805_pilon to pilon.fasta [pilon] Writing NODE_6112_length_531_cov_16.802439:1-531 changes to pilon.changes [pilon] Writing updated NODE_6112_length_531_cov_16.802439_pilon to pilon.fasta [pilon] Writing NODE_6113_length_531_cov_13.012195:1-531 changes to pilon.changes [pilon] Writing updated NODE_6113_length_531_cov_13.012195_pilon to pilon.fasta [pilon] Writing NODE_6114_length_531_cov_12.919512:1-531 changes to pilon.changes [pilon] Writing updated NODE_6114_length_531_cov_12.919512_pilon to pilon.fasta [pilon] Writing NODE_6115_length_531_cov_11.800000:1-531 changes to pilon.changes [pilon] Writing updated NODE_6115_length_531_cov_11.800000_pilon to pilon.fasta [pilon] Writing NODE_6116_length_531_cov_4.624390:1-531 changes to pilon.changes [pilon] Writing updated NODE_6116_length_531_cov_4.624390_pilon to pilon.fasta [pilon] Writing NODE_6117_length_530_cov_61.611247:1-530 changes to pilon.changes [pilon] Writing updated NODE_6117_length_530_cov_61.611247_pilon to pilon.fasta [pilon] Writing NODE_6118_length_530_cov_48.682152:1-530 changes to pilon.changes [pilon] Writing updated NODE_6118_length_530_cov_48.682152_pilon to pilon.fasta [pilon] Writing NODE_6119_length_530_cov_43.273839:1-530 changes to pilon.changes [pilon] Writing updated NODE_6119_length_530_cov_43.273839_pilon to pilon.fasta [pilon] Writing NODE_6120_length_530_cov_40.515892:1-530 changes to pilon.changes [pilon] Writing updated NODE_6120_length_530_cov_40.515892_pilon to pilon.fasta [pilon] Writing NODE_6121_length_530_cov_27.848411:1-530 changes to pilon.changes [pilon] Writing updated NODE_6121_length_530_cov_27.848411_pilon to pilon.fasta [pilon] Writing NODE_6122_length_530_cov_20.012225:1-530 changes to pilon.changes [pilon] Writing updated NODE_6122_length_530_cov_20.012225_pilon to pilon.fasta [pilon] Writing NODE_6123_length_530_cov_17.070905:1-530 changes to pilon.changes [pilon] Writing updated NODE_6123_length_530_cov_17.070905_pilon to pilon.fasta [pilon] Writing NODE_6124_length_530_cov_3.784841:1-530 changes to pilon.changes [pilon] Writing updated NODE_6124_length_530_cov_3.784841_pilon to pilon.fasta [pilon] Writing NODE_6125_length_530_cov_2.506112:1-530 changes to pilon.changes [pilon] Writing updated NODE_6125_length_530_cov_2.506112_pilon to pilon.fasta [pilon] Writing NODE_6126_length_530_cov_2.088020:1-530 changes to pilon.changes [pilon] Writing updated NODE_6126_length_530_cov_2.088020_pilon to pilon.fasta [pilon] Writing NODE_6127_length_530_cov_0.811736:1-530 changes to pilon.changes [pilon] Writing updated NODE_6127_length_530_cov_0.811736_pilon to pilon.fasta [pilon] Writing NODE_6128_length_529_cov_51.512255:1-529 changes to pilon.changes [pilon] Writing updated NODE_6128_length_529_cov_51.512255_pilon to pilon.fasta [pilon] Writing NODE_6129_length_529_cov_38.235294:1-529 changes to pilon.changes [pilon] Writing updated NODE_6129_length_529_cov_38.235294_pilon to pilon.fasta [pilon] Writing NODE_6130_length_529_cov_37.286765:1-529 changes to pilon.changes [pilon] Writing updated NODE_6130_length_529_cov_37.286765_pilon to pilon.fasta [pilon] Writing NODE_6131_length_529_cov_25.274510:1-529 changes to pilon.changes [pilon] Writing updated NODE_6131_length_529_cov_25.274510_pilon to pilon.fasta [pilon] Writing NODE_6132_length_529_cov_23.924020:1-529 changes to pilon.changes [pilon] Writing updated NODE_6132_length_529_cov_23.924020_pilon to pilon.fasta [pilon] Writing NODE_6133_length_529_cov_22.453431:1-529 changes to pilon.changes [pilon] Writing updated NODE_6133_length_529_cov_22.453431_pilon to pilon.fasta [pilon] Writing NODE_6134_length_529_cov_22.012255:1-529 changes to pilon.changes [pilon] Writing updated NODE_6134_length_529_cov_22.012255_pilon to pilon.fasta [pilon] Writing NODE_6135_length_529_cov_16.139706:1-529 changes to pilon.changes [pilon] Writing updated NODE_6135_length_529_cov_16.139706_pilon to pilon.fasta [pilon] Writing NODE_6136_length_529_cov_15.443627:1-529 changes to pilon.changes [pilon] Writing updated NODE_6136_length_529_cov_15.443627_pilon to pilon.fasta [pilon] Writing NODE_6137_length_529_cov_14.522059:1-529 changes to pilon.changes [pilon] Writing updated NODE_6137_length_529_cov_14.522059_pilon to pilon.fasta [pilon] Writing NODE_6138_length_529_cov_6.933824:1-529 changes to pilon.changes [pilon] Writing updated NODE_6138_length_529_cov_6.933824_pilon to pilon.fasta [pilon] Writing NODE_6139_length_529_cov_2.541667:1-529 changes to pilon.changes [pilon] Writing updated NODE_6139_length_529_cov_2.541667_pilon to pilon.fasta [pilon] Writing NODE_6140_length_529_cov_1.438725:1-529 changes to pilon.changes [pilon] Writing updated NODE_6140_length_529_cov_1.438725_pilon to pilon.fasta [pilon] Writing NODE_6141_length_529_cov_1.343137:1-529 changes to pilon.changes [pilon] Writing updated NODE_6141_length_529_cov_1.343137_pilon to pilon.fasta [pilon] Writing NODE_6142_length_529_cov_0.656863:1-529 changes to pilon.changes [pilon] Writing updated NODE_6142_length_529_cov_0.656863_pilon to pilon.fasta [pilon] Writing NODE_6143_length_528_cov_40.213759:1-528 changes to pilon.changes [pilon] Writing updated NODE_6143_length_528_cov_40.213759_pilon to pilon.fasta [pilon] Writing NODE_6144_length_528_cov_36.304668:1-528 changes to pilon.changes [pilon] Writing updated NODE_6144_length_528_cov_36.304668_pilon to pilon.fasta [pilon] Writing NODE_6145_length_528_cov_28.125307:1-528 changes to pilon.changes [pilon] Writing updated NODE_6145_length_528_cov_28.125307_pilon to pilon.fasta [pilon] Writing NODE_6146_length_528_cov_25.904177:1-528 changes to pilon.changes [pilon] Writing updated NODE_6146_length_528_cov_25.904177_pilon to pilon.fasta [pilon] Writing NODE_6147_length_528_cov_25.390663:1-528 changes to pilon.changes [pilon] Writing updated NODE_6147_length_528_cov_25.390663_pilon to pilon.fasta [pilon] Writing NODE_6148_length_528_cov_20.022113:1-528 changes to pilon.changes [pilon] Writing updated NODE_6148_length_528_cov_20.022113_pilon to pilon.fasta [pilon] Writing NODE_6149_length_528_cov_19.041769:1-528 changes to pilon.changes [pilon] Writing updated NODE_6149_length_528_cov_19.041769_pilon to pilon.fasta [pilon] Writing NODE_6150_length_528_cov_18.110565:1-528 changes to pilon.changes [pilon] Writing updated NODE_6150_length_528_cov_18.110565_pilon to pilon.fasta [pilon] Writing NODE_6151_length_528_cov_14.857494:1-528 changes to pilon.changes [pilon] Writing updated NODE_6151_length_528_cov_14.857494_pilon to pilon.fasta [pilon] Writing NODE_6152_length_528_cov_14.710074:1-528 changes to pilon.changes [pilon] Writing updated NODE_6152_length_528_cov_14.710074_pilon to pilon.fasta [pilon] Writing NODE_6153_length_528_cov_8.945946:1-528 changes to pilon.changes [pilon] Writing updated NODE_6153_length_528_cov_8.945946_pilon to pilon.fasta [pilon] Writing NODE_6154_length_528_cov_5.029484:1-528 changes to pilon.changes [pilon] Writing updated NODE_6154_length_528_cov_5.029484_pilon to pilon.fasta [pilon] Writing NODE_6155_length_528_cov_2.452088:1-528 changes to pilon.changes [pilon] Writing updated NODE_6155_length_528_cov_2.452088_pilon to pilon.fasta [pilon] Writing NODE_6156_length_528_cov_2.302211:1-528 changes to pilon.changes [pilon] Writing updated NODE_6156_length_528_cov_2.302211_pilon to pilon.fasta [pilon] Writing NODE_6157_length_528_cov_2.265356:1-528 changes to pilon.changes [pilon] Writing updated NODE_6157_length_528_cov_2.265356_pilon to pilon.fasta [pilon] Writing NODE_6158_length_528_cov_1.144963:1-528 changes to pilon.changes [pilon] Writing updated NODE_6158_length_528_cov_1.144963_pilon to pilon.fasta [pilon] Writing NODE_6159_length_528_cov_0.921376:1-528 changes to pilon.changes [pilon] Writing updated NODE_6159_length_528_cov_0.921376_pilon to pilon.fasta [pilon] Writing NODE_6160_length_527_cov_71.827586:1-527 changes to pilon.changes [pilon] Writing updated NODE_6160_length_527_cov_71.827586_pilon to pilon.fasta [pilon] Writing NODE_6161_length_527_cov_58.645320:1-527 changes to pilon.changes [pilon] Writing updated NODE_6161_length_527_cov_58.645320_pilon to pilon.fasta [pilon] Writing NODE_6162_length_527_cov_37.857143:1-527 changes to pilon.changes [pilon] Writing updated NODE_6162_length_527_cov_37.857143_pilon to pilon.fasta [pilon] Writing NODE_6163_length_527_cov_24.470443:1-527 changes to pilon.changes [pilon] Writing updated NODE_6163_length_527_cov_24.470443_pilon to pilon.fasta [pilon] Writing NODE_6164_length_527_cov_23.544335:1-527 changes to pilon.changes [pilon] Writing updated NODE_6164_length_527_cov_23.544335_pilon to pilon.fasta [pilon] Writing NODE_6165_length_527_cov_21.187192:1-527 changes to pilon.changes [pilon] Writing updated NODE_6165_length_527_cov_21.187192_pilon to pilon.fasta [pilon] Writing NODE_6166_length_527_cov_19.827586:1-527 changes to pilon.changes [pilon] Writing updated NODE_6166_length_527_cov_19.827586_pilon to pilon.fasta [pilon] Writing NODE_6167_length_527_cov_15.879310:1-527 changes to pilon.changes [pilon] Writing updated NODE_6167_length_527_cov_15.879310_pilon to pilon.fasta [pilon] Writing NODE_6168_length_527_cov_13.741379:1-527 changes to pilon.changes [pilon] Writing updated NODE_6168_length_527_cov_13.741379_pilon to pilon.fasta [pilon] Writing NODE_6169_length_527_cov_6.600985:1-527 changes to pilon.changes [pilon] Writing updated NODE_6169_length_527_cov_6.600985_pilon to pilon.fasta [pilon] Writing NODE_6170_length_527_cov_1.184729:1-527 changes to pilon.changes [pilon] Writing updated NODE_6170_length_527_cov_1.184729_pilon to pilon.fasta [pilon] Writing NODE_6171_length_527_cov_0.990148:1-527 changes to pilon.changes [pilon] Writing updated NODE_6171_length_527_cov_0.990148_pilon to pilon.fasta [pilon] Writing NODE_6172_length_527_cov_0.566502:1-527 changes to pilon.changes [pilon] Writing updated NODE_6172_length_527_cov_0.566502_pilon to pilon.fasta [pilon] Writing NODE_6173_length_527_cov_0.522167:1-527 changes to pilon.changes [pilon] Writing updated NODE_6173_length_527_cov_0.522167_pilon to pilon.fasta [pilon] Writing NODE_6174_length_527_cov_0.401478:1-527 changes to pilon.changes [pilon] Writing updated NODE_6174_length_527_cov_0.401478_pilon to pilon.fasta [pilon] Writing NODE_6175_length_526_cov_14.809877:1-526 changes to pilon.changes [pilon] Writing updated NODE_6175_length_526_cov_14.809877_pilon to pilon.fasta [pilon] Writing NODE_6176_length_526_cov_9.261728:1-526 changes to pilon.changes [pilon] Writing updated NODE_6176_length_526_cov_9.261728_pilon to pilon.fasta [pilon] Writing NODE_6177_length_526_cov_6.195062:1-526 changes to pilon.changes [pilon] Writing updated NODE_6177_length_526_cov_6.195062_pilon to pilon.fasta [pilon] Writing NODE_6178_length_526_cov_2.145679:1-526 changes to pilon.changes [pilon] Writing updated NODE_6178_length_526_cov_2.145679_pilon to pilon.fasta [pilon] Writing NODE_6179_length_526_cov_1.543210:1-526 changes to pilon.changes [pilon] Writing updated NODE_6179_length_526_cov_1.543210_pilon to pilon.fasta [pilon] Writing NODE_6180_length_526_cov_1.138272:1-526 changes to pilon.changes [pilon] Writing updated NODE_6180_length_526_cov_1.138272_pilon to pilon.fasta [pilon] Writing NODE_6181_length_526_cov_0.945679:1-526 changes to pilon.changes [pilon] Writing updated NODE_6181_length_526_cov_0.945679_pilon to pilon.fasta [pilon] Writing NODE_6182_length_526_cov_0.659259:1-526 changes to pilon.changes [pilon] Writing updated NODE_6182_length_526_cov_0.659259_pilon to pilon.fasta [pilon] Writing NODE_6183_length_525_cov_54.044554:1-525 changes to pilon.changes [pilon] Writing updated NODE_6183_length_525_cov_54.044554_pilon to pilon.fasta [pilon] Writing NODE_6184_length_525_cov_52.735149:1-525 changes to pilon.changes [pilon] Writing updated NODE_6184_length_525_cov_52.735149_pilon to pilon.fasta [pilon] Writing NODE_6185_length_525_cov_34.230198:1-525 changes to pilon.changes [pilon] Writing updated NODE_6185_length_525_cov_34.230198_pilon to pilon.fasta [pilon] Writing NODE_6186_length_525_cov_28.252475:1-525 changes to pilon.changes [pilon] Writing updated NODE_6186_length_525_cov_28.252475_pilon to pilon.fasta [pilon] Writing NODE_6187_length_525_cov_22.440594:1-525 changes to pilon.changes [pilon] Writing updated NODE_6187_length_525_cov_22.440594_pilon to pilon.fasta [pilon] Writing NODE_6188_length_525_cov_12.851485:1-525 changes to pilon.changes [pilon] Writing updated NODE_6188_length_525_cov_12.851485_pilon to pilon.fasta [pilon] Writing NODE_6189_length_525_cov_12.547030:1-525 changes to pilon.changes [pilon] Writing updated NODE_6189_length_525_cov_12.547030_pilon to pilon.fasta [pilon] Writing NODE_6190_length_525_cov_6.579208:1-525 changes to pilon.changes [pilon] Writing updated NODE_6190_length_525_cov_6.579208_pilon to pilon.fasta [pilon] Writing NODE_6191_length_525_cov_3.009901:1-525 changes to pilon.changes [pilon] Writing updated NODE_6191_length_525_cov_3.009901_pilon to pilon.fasta [pilon] Writing NODE_6192_length_525_cov_2.586634:1-525 changes to pilon.changes [pilon] Writing updated NODE_6192_length_525_cov_2.586634_pilon to pilon.fasta [pilon] Writing NODE_6193_length_525_cov_0.675743:1-525 changes to pilon.changes [pilon] Writing updated NODE_6193_length_525_cov_0.675743_pilon to pilon.fasta [pilon] Writing NODE_6194_length_524_cov_50.647643:1-524 changes to pilon.changes [pilon] Writing updated NODE_6194_length_524_cov_50.647643_pilon to pilon.fasta [pilon] Writing NODE_6195_length_524_cov_32.498759:1-524 changes to pilon.changes [pilon] Writing updated NODE_6195_length_524_cov_32.498759_pilon to pilon.fasta [pilon] Writing NODE_6196_length_524_cov_30.739454:1-524 changes to pilon.changes [pilon] Writing updated NODE_6196_length_524_cov_30.739454_pilon to pilon.fasta [pilon] Writing NODE_6197_length_524_cov_21.220844:1-524 changes to pilon.changes [pilon] Writing updated NODE_6197_length_524_cov_21.220844_pilon to pilon.fasta [pilon] Writing NODE_6198_length_524_cov_17.933002:1-524 changes to pilon.changes [pilon] Writing updated NODE_6198_length_524_cov_17.933002_pilon to pilon.fasta [pilon] Writing NODE_6199_length_524_cov_17.205955:1-524 changes to pilon.changes [pilon] Writing updated NODE_6199_length_524_cov_17.205955_pilon to pilon.fasta [pilon] Writing NODE_6200_length_524_cov_13.808933:1-524 changes to pilon.changes [pilon] Writing updated NODE_6200_length_524_cov_13.808933_pilon to pilon.fasta [pilon] Writing NODE_6201_length_524_cov_13.339950:1-524 changes to pilon.changes [pilon] Writing updated NODE_6201_length_524_cov_13.339950_pilon to pilon.fasta [pilon] Writing NODE_6202_length_524_cov_13.330025:1-524 changes to pilon.changes [pilon] Writing updated NODE_6202_length_524_cov_13.330025_pilon to pilon.fasta [pilon] Writing NODE_6203_length_524_cov_12.282878:1-524 changes to pilon.changes [pilon] Writing updated NODE_6203_length_524_cov_12.282878_pilon to pilon.fasta [pilon] Writing NODE_6204_length_524_cov_5.933002:1-524 changes to pilon.changes [pilon] Writing updated NODE_6204_length_524_cov_5.933002_pilon to pilon.fasta [pilon] Writing NODE_6205_length_524_cov_3.746898:1-524 changes to pilon.changes [pilon] Writing updated NODE_6205_length_524_cov_3.746898_pilon to pilon.fasta [pilon] Writing NODE_6206_length_524_cov_2.486352:1-524 changes to pilon.changes [pilon] Writing updated NODE_6206_length_524_cov_2.486352_pilon to pilon.fasta [pilon] Writing NODE_6207_length_524_cov_1.267990:1-524 changes to pilon.changes [pilon] Writing updated NODE_6207_length_524_cov_1.267990_pilon to pilon.fasta [pilon] Writing NODE_6208_length_524_cov_0.913151:1-524 changes to pilon.changes [pilon] Writing updated NODE_6208_length_524_cov_0.913151_pilon to pilon.fasta [pilon] Writing NODE_6209_length_524_cov_0.595533:1-524 changes to pilon.changes [pilon] Writing updated NODE_6209_length_524_cov_0.595533_pilon to pilon.fasta [pilon] Writing NODE_6210_length_523_cov_34.537313:1-523 changes to pilon.changes [pilon] Writing updated NODE_6210_length_523_cov_34.537313_pilon to pilon.fasta [pilon] Writing NODE_6211_length_523_cov_32.415423:1-523 changes to pilon.changes [pilon] Writing updated NODE_6211_length_523_cov_32.415423_pilon to pilon.fasta [pilon] Writing NODE_6212_length_523_cov_25.343284:1-523 changes to pilon.changes [pilon] Writing updated NODE_6212_length_523_cov_25.343284_pilon to pilon.fasta [pilon] Writing NODE_6213_length_523_cov_22.390547:1-523 changes to pilon.changes [pilon] Writing updated NODE_6213_length_523_cov_22.390547_pilon to pilon.fasta [pilon] Writing NODE_6214_length_523_cov_22.370647:1-523 changes to pilon.changes [pilon] Writing updated NODE_6214_length_523_cov_22.370647_pilon to pilon.fasta [pilon] Writing NODE_6215_length_523_cov_17.803483:1-523 changes to pilon.changes [pilon] Writing updated NODE_6215_length_523_cov_17.803483_pilon to pilon.fasta [pilon] Writing NODE_6216_length_523_cov_16.614428:1-523 changes to pilon.changes [pilon] Writing updated NODE_6216_length_523_cov_16.614428_pilon to pilon.fasta [pilon] Writing NODE_6217_length_523_cov_15.325871:1-523 changes to pilon.changes [pilon] Writing updated NODE_6217_length_523_cov_15.325871_pilon to pilon.fasta [pilon] Writing NODE_6218_length_523_cov_11.589552:1-523 changes to pilon.changes [pilon] Writing updated NODE_6218_length_523_cov_11.589552_pilon to pilon.fasta [pilon] Writing NODE_6219_length_523_cov_8.221393:1-523 changes to pilon.changes [pilon] Writing updated NODE_6219_length_523_cov_8.221393_pilon to pilon.fasta [pilon] Writing NODE_6220_length_523_cov_4.094527:1-523 changes to pilon.changes [pilon] Writing updated NODE_6220_length_523_cov_4.094527_pilon to pilon.fasta [pilon] Writing NODE_6221_length_523_cov_3.388060:1-523 changes to pilon.changes [pilon] Writing updated NODE_6221_length_523_cov_3.388060_pilon to pilon.fasta [pilon] Writing NODE_6222_length_523_cov_1.457711:1-523 changes to pilon.changes [pilon] Writing updated NODE_6222_length_523_cov_1.457711_pilon to pilon.fasta [pilon] Writing NODE_6223_length_523_cov_1.266169:1-523 changes to pilon.changes [pilon] Writing updated NODE_6223_length_523_cov_1.266169_pilon to pilon.fasta [pilon] Writing NODE_6224_length_522_cov_43.418953:1-522 changes to pilon.changes [pilon] Writing updated NODE_6224_length_522_cov_43.418953_pilon to pilon.fasta [pilon] Writing NODE_6225_length_522_cov_35.271820:1-522 changes to pilon.changes [pilon] Writing updated NODE_6225_length_522_cov_35.271820_pilon to pilon.fasta [pilon] Writing NODE_6226_length_522_cov_32.364090:1-522 changes to pilon.changes [pilon] Writing updated NODE_6226_length_522_cov_32.364090_pilon to pilon.fasta [pilon] Writing NODE_6227_length_522_cov_31.182045:1-522 changes to pilon.changes [pilon] Writing updated NODE_6227_length_522_cov_31.182045_pilon to pilon.fasta [pilon] Writing NODE_6228_length_522_cov_28.698254:1-522 changes to pilon.changes [pilon] Writing updated NODE_6228_length_522_cov_28.698254_pilon to pilon.fasta [pilon] Writing NODE_6229_length_522_cov_27.521197:1-522 changes to pilon.changes [pilon] Writing updated NODE_6229_length_522_cov_27.521197_pilon to pilon.fasta [pilon] Writing NODE_6230_length_522_cov_22.665835:1-522 changes to pilon.changes [pilon] Writing updated NODE_6230_length_522_cov_22.665835_pilon to pilon.fasta [pilon] Writing NODE_6231_length_522_cov_21.304239:1-522 changes to pilon.changes [pilon] Writing updated NODE_6231_length_522_cov_21.304239_pilon to pilon.fasta [pilon] Writing NODE_6232_length_522_cov_18.827930:1-522 changes to pilon.changes [pilon] Writing updated NODE_6232_length_522_cov_18.827930_pilon to pilon.fasta [pilon] Writing NODE_6233_length_522_cov_14.319202:1-522 changes to pilon.changes [pilon] Writing updated NODE_6233_length_522_cov_14.319202_pilon to pilon.fasta [pilon] Writing NODE_6234_length_522_cov_13.433915:1-522 changes to pilon.changes [pilon] Writing updated NODE_6234_length_522_cov_13.433915_pilon to pilon.fasta [pilon] Writing NODE_6235_length_522_cov_12.496259:1-522 changes to pilon.changes [pilon] Writing updated NODE_6235_length_522_cov_12.496259_pilon to pilon.fasta [pilon] Writing NODE_6236_length_522_cov_10.817955:1-522 changes to pilon.changes [pilon] Writing updated NODE_6236_length_522_cov_10.817955_pilon to pilon.fasta [pilon] Writing NODE_6237_length_522_cov_8.765586:1-522 changes to pilon.changes [pilon] Writing updated NODE_6237_length_522_cov_8.765586_pilon to pilon.fasta [pilon] Writing NODE_6238_length_522_cov_7.872818:1-522 changes to pilon.changes [pilon] Writing updated NODE_6238_length_522_cov_7.872818_pilon to pilon.fasta [pilon] Writing NODE_6239_length_522_cov_2.845387:1-522 changes to pilon.changes [pilon] Writing updated NODE_6239_length_522_cov_2.845387_pilon to pilon.fasta [pilon] Writing NODE_6240_length_522_cov_2.496259:1-522 changes to pilon.changes [pilon] Writing updated NODE_6240_length_522_cov_2.496259_pilon to pilon.fasta [pilon] Writing NODE_6241_length_522_cov_0.613466:1-522 changes to pilon.changes [pilon] Writing updated NODE_6241_length_522_cov_0.613466_pilon to pilon.fasta [pilon] Writing NODE_6242_length_522_cov_0.533666:1-522 changes to pilon.changes [pilon] Writing updated NODE_6242_length_522_cov_0.533666_pilon to pilon.fasta [pilon] Writing NODE_6243_length_521_cov_37.520000:1-521 changes to pilon.changes [pilon] Writing updated NODE_6243_length_521_cov_37.520000_pilon to pilon.fasta [pilon] Writing NODE_6244_length_521_cov_24.485000:1-521 changes to pilon.changes [pilon] Writing updated NODE_6244_length_521_cov_24.485000_pilon to pilon.fasta [pilon] Writing NODE_6245_length_521_cov_24.405000:1-521 changes to pilon.changes [pilon] Writing updated NODE_6245_length_521_cov_24.405000_pilon to pilon.fasta [pilon] Writing NODE_6246_length_521_cov_20.297500:1-521 changes to pilon.changes [pilon] Writing updated NODE_6246_length_521_cov_20.297500_pilon to pilon.fasta [pilon] Writing NODE_6247_length_521_cov_8.562500:1-521 changes to pilon.changes [pilon] Writing updated NODE_6247_length_521_cov_8.562500_pilon to pilon.fasta [pilon] Writing NODE_6248_length_521_cov_7.607500:1-521 changes to pilon.changes [pilon] Writing updated NODE_6248_length_521_cov_7.607500_pilon to pilon.fasta [pilon] Writing NODE_6249_length_521_cov_7.112500:1-521 changes to pilon.changes [pilon] Writing updated NODE_6249_length_521_cov_7.112500_pilon to pilon.fasta [pilon] Writing NODE_6250_length_521_cov_2.562500:1-521 changes to pilon.changes [pilon] Writing updated NODE_6250_length_521_cov_2.562500_pilon to pilon.fasta [pilon] Writing NODE_6251_length_521_cov_1.945000:1-521 changes to pilon.changes [pilon] Writing updated NODE_6251_length_521_cov_1.945000_pilon to pilon.fasta [pilon] Writing NODE_6252_length_521_cov_1.490000:1-521 changes to pilon.changes [pilon] Writing updated NODE_6252_length_521_cov_1.490000_pilon to pilon.fasta [pilon] Writing NODE_6253_length_521_cov_1.280000:1-521 changes to pilon.changes [pilon] Writing updated NODE_6253_length_521_cov_1.280000_pilon to pilon.fasta [pilon] Writing NODE_6254_length_521_cov_0.692500:1-521 changes to pilon.changes [pilon] Writing updated NODE_6254_length_521_cov_0.692500_pilon to pilon.fasta [pilon] Writing NODE_6255_length_521_cov_0.437500:1-521 changes to pilon.changes [pilon] Writing updated NODE_6255_length_521_cov_0.437500_pilon to pilon.fasta [pilon] Writing NODE_6256_length_520_cov_42.721805:1-520 changes to pilon.changes [pilon] Writing updated NODE_6256_length_520_cov_42.721805_pilon to pilon.fasta [pilon] Writing NODE_6257_length_520_cov_33.721805:1-520 changes to pilon.changes [pilon] Writing updated NODE_6257_length_520_cov_33.721805_pilon to pilon.fasta [pilon] Writing NODE_6258_length_520_cov_31.503759:1-520 changes to pilon.changes [pilon] Writing updated NODE_6258_length_520_cov_31.503759_pilon to pilon.fasta [pilon] Writing NODE_6259_length_520_cov_28.676692:1-520 changes to pilon.changes [pilon] Writing updated NODE_6259_length_520_cov_28.676692_pilon to pilon.fasta [pilon] Writing NODE_6260_length_520_cov_25.982456:1-520 changes to pilon.changes [pilon] Writing updated NODE_6260_length_520_cov_25.982456_pilon to pilon.fasta [pilon] Writing NODE_6261_length_520_cov_25.523810:1-520 changes to pilon.changes [pilon] Writing updated NODE_6261_length_520_cov_25.523810_pilon to pilon.fasta [pilon] Writing NODE_6262_length_520_cov_23.791980:1-520 changes to pilon.changes [pilon] Writing updated NODE_6262_length_520_cov_23.791980_pilon to pilon.fasta [pilon] Writing NODE_6263_length_520_cov_21.824561:1-520 changes to pilon.changes [pilon] Writing updated NODE_6263_length_520_cov_21.824561_pilon to pilon.fasta [pilon] Writing NODE_6264_length_520_cov_19.686717:1-520 changes to pilon.changes [pilon] Writing updated NODE_6264_length_520_cov_19.686717_pilon to pilon.fasta [pilon] Writing NODE_6265_length_520_cov_12.258145:1-520 changes to pilon.changes [pilon] Writing updated NODE_6265_length_520_cov_12.258145_pilon to pilon.fasta [pilon] Writing NODE_6266_length_520_cov_2.556391:1-520 changes to pilon.changes [pilon] Writing updated NODE_6266_length_520_cov_2.556391_pilon to pilon.fasta [pilon] Writing NODE_6267_length_520_cov_2.170426:1-520 changes to pilon.changes [pilon] Writing updated NODE_6267_length_520_cov_2.170426_pilon to pilon.fasta [pilon] Writing NODE_6268_length_520_cov_1.350877:1-520 changes to pilon.changes [pilon] Writing updated NODE_6268_length_520_cov_1.350877_pilon to pilon.fasta [pilon] Writing NODE_6269_length_520_cov_0.230576:1-520 changes to pilon.changes [pilon] Writing updated NODE_6269_length_520_cov_0.230576_pilon to pilon.fasta [pilon] Writing NODE_6270_length_519_cov_37.809045:1-519 changes to pilon.changes [pilon] Writing updated NODE_6270_length_519_cov_37.809045_pilon to pilon.fasta [pilon] Writing NODE_6271_length_519_cov_37.062814:1-519 changes to pilon.changes [pilon] Writing updated NODE_6271_length_519_cov_37.062814_pilon to pilon.fasta [pilon] Writing NODE_6272_length_519_cov_34.891960:1-519 changes to pilon.changes [pilon] Writing updated NODE_6272_length_519_cov_34.891960_pilon to pilon.fasta [pilon] Writing NODE_6273_length_519_cov_25.997487:1-519 changes to pilon.changes [pilon] Writing updated NODE_6273_length_519_cov_25.997487_pilon to pilon.fasta [pilon] Writing NODE_6274_length_519_cov_25.763819:1-519 changes to pilon.changes [pilon] Writing updated NODE_6274_length_519_cov_25.763819_pilon to pilon.fasta [pilon] Writing NODE_6275_length_519_cov_25.520101:1-519 changes to pilon.changes [pilon] Writing updated NODE_6275_length_519_cov_25.520101_pilon to pilon.fasta [pilon] Writing NODE_6276_length_519_cov_24.464824:1-519 changes to pilon.changes [pilon] Writing updated NODE_6276_length_519_cov_24.464824_pilon to pilon.fasta [pilon] Writing NODE_6277_length_519_cov_22.839196:1-519 changes to pilon.changes [pilon] Writing updated NODE_6277_length_519_cov_22.839196_pilon to pilon.fasta [pilon] Writing NODE_6278_length_519_cov_17.640704:1-519 changes to pilon.changes [pilon] Writing updated NODE_6278_length_519_cov_17.640704_pilon to pilon.fasta [pilon] Writing NODE_6279_length_519_cov_17.195980:1-519 changes to pilon.changes [pilon] Writing updated NODE_6279_length_519_cov_17.195980_pilon to pilon.fasta [pilon] Writing NODE_6280_length_519_cov_15.884422:1-519 changes to pilon.changes [pilon] Writing updated NODE_6280_length_519_cov_15.884422_pilon to pilon.fasta [pilon] Writing NODE_6281_length_519_cov_1.618090:1-519 changes to pilon.changes [pilon] Writing updated NODE_6281_length_519_cov_1.618090_pilon to pilon.fasta [pilon] Writing NODE_6282_length_519_cov_1.233668:1-519 changes to pilon.changes [pilon] Writing updated NODE_6282_length_519_cov_1.233668_pilon to pilon.fasta [pilon] Writing NODE_6283_length_519_cov_1.115578:1-519 changes to pilon.changes [pilon] Writing updated NODE_6283_length_519_cov_1.115578_pilon to pilon.fasta [pilon] Writing NODE_6284_length_519_cov_0.919598:1-519 changes to pilon.changes [pilon] Writing updated NODE_6284_length_519_cov_0.919598_pilon to pilon.fasta [pilon] Writing NODE_6285_length_519_cov_0.829146:1-519 changes to pilon.changes [pilon] Writing updated NODE_6285_length_519_cov_0.829146_pilon to pilon.fasta [pilon] Writing NODE_6286_length_519_cov_0.635678:1-519 changes to pilon.changes [pilon] Writing updated NODE_6286_length_519_cov_0.635678_pilon to pilon.fasta [pilon] Writing NODE_6287_length_518_cov_49.287154:1-518 changes to pilon.changes [pilon] Writing updated NODE_6287_length_518_cov_49.287154_pilon to pilon.fasta [pilon] Writing NODE_6288_length_518_cov_48.584383:1-518 changes to pilon.changes [pilon] Writing updated NODE_6288_length_518_cov_48.584383_pilon to pilon.fasta [pilon] Writing NODE_6289_length_518_cov_44.659950:1-518 changes to pilon.changes [pilon] Writing updated NODE_6289_length_518_cov_44.659950_pilon to pilon.fasta [pilon] Writing NODE_6290_length_518_cov_34.984887:1-518 changes to pilon.changes [pilon] Writing updated NODE_6290_length_518_cov_34.984887_pilon to pilon.fasta [pilon] Writing NODE_6291_length_518_cov_34.085642:1-518 changes to pilon.changes [pilon] Writing updated NODE_6291_length_518_cov_34.085642_pilon to pilon.fasta [pilon] Writing NODE_6292_length_518_cov_31.329975:1-518 changes to pilon.changes [pilon] Writing updated NODE_6292_length_518_cov_31.329975_pilon to pilon.fasta [pilon] Writing NODE_6293_length_518_cov_28.100756:1-518 changes to pilon.changes [pilon] Writing updated NODE_6293_length_518_cov_28.100756_pilon to pilon.fasta [pilon] Writing NODE_6294_length_518_cov_27.481108:1-518 changes to pilon.changes [pilon] Writing updated NODE_6294_length_518_cov_27.481108_pilon to pilon.fasta [pilon] Writing NODE_6295_length_518_cov_25.574307:1-518 changes to pilon.changes [pilon] Writing updated NODE_6295_length_518_cov_25.574307_pilon to pilon.fasta [pilon] Writing NODE_6296_length_518_cov_23.090680:1-518 changes to pilon.changes [pilon] Writing updated NODE_6296_length_518_cov_23.090680_pilon to pilon.fasta [pilon] Writing NODE_6297_length_518_cov_17.453401:1-518 changes to pilon.changes [pilon] Writing updated NODE_6297_length_518_cov_17.453401_pilon to pilon.fasta [pilon] Writing NODE_6298_length_518_cov_16.012594:1-518 changes to pilon.changes [pilon] Writing updated NODE_6298_length_518_cov_16.012594_pilon to pilon.fasta [pilon] Writing NODE_6299_length_518_cov_16.012594:1-518 changes to pilon.changes [pilon] Writing updated NODE_6299_length_518_cov_16.012594_pilon to pilon.fasta [pilon] Writing NODE_6300_length_518_cov_3.279597:1-518 changes to pilon.changes [pilon] Writing updated NODE_6300_length_518_cov_3.279597_pilon to pilon.fasta [pilon] Writing NODE_6301_length_518_cov_1.576826:1-518 changes to pilon.changes [pilon] Writing updated NODE_6301_length_518_cov_1.576826_pilon to pilon.fasta [pilon] Writing NODE_6302_length_518_cov_1.173804:1-518 changes to pilon.changes [pilon] Writing updated NODE_6302_length_518_cov_1.173804_pilon to pilon.fasta [pilon] Writing NODE_6303_length_518_cov_0.778338:1-518 changes to pilon.changes [pilon] Writing updated NODE_6303_length_518_cov_0.778338_pilon to pilon.fasta [pilon] Writing NODE_6304_length_518_cov_0.765743:1-518 changes to pilon.changes [pilon] Writing updated NODE_6304_length_518_cov_0.765743_pilon to pilon.fasta [pilon] Writing NODE_6305_length_518_cov_0.375315:1-518 changes to pilon.changes [pilon] Writing updated NODE_6305_length_518_cov_0.375315_pilon to pilon.fasta [pilon] Writing NODE_6306_length_517_cov_28.760101:1-517 changes to pilon.changes [pilon] Writing updated NODE_6306_length_517_cov_28.760101_pilon to pilon.fasta [pilon] Writing NODE_6307_length_517_cov_17.429293:1-517 changes to pilon.changes [pilon] Writing updated NODE_6307_length_517_cov_17.429293_pilon to pilon.fasta [pilon] Writing NODE_6308_length_517_cov_4.537879:1-517 changes to pilon.changes [pilon] Writing updated NODE_6308_length_517_cov_4.537879_pilon to pilon.fasta [pilon] Writing NODE_6309_length_517_cov_2.744949:1-517 changes to pilon.changes [pilon] Writing updated NODE_6309_length_517_cov_2.744949_pilon to pilon.fasta [pilon] Writing NODE_6310_length_517_cov_2.277778:1-517 changes to pilon.changes [pilon] Writing updated NODE_6310_length_517_cov_2.277778_pilon to pilon.fasta [pilon] Writing NODE_6311_length_517_cov_0.914141:1-517 changes to pilon.changes [pilon] Writing updated NODE_6311_length_517_cov_0.914141_pilon to pilon.fasta [pilon] Writing NODE_6312_length_517_cov_0.800505:1-517 changes to pilon.changes [pilon] Writing updated NODE_6312_length_517_cov_0.800505_pilon to pilon.fasta [pilon] Writing NODE_6313_length_516_cov_41.460759:1-516 changes to pilon.changes [pilon] Writing updated NODE_6313_length_516_cov_41.460759_pilon to pilon.fasta [pilon] Writing NODE_6314_length_516_cov_32.463291:1-516 changes to pilon.changes [pilon] Writing updated NODE_6314_length_516_cov_32.463291_pilon to pilon.fasta [pilon] Writing NODE_6315_length_516_cov_24.898734:1-516 changes to pilon.changes [pilon] Writing updated NODE_6315_length_516_cov_24.898734_pilon to pilon.fasta [pilon] Writing NODE_6316_length_516_cov_24.010127:1-516 changes to pilon.changes [pilon] Writing updated NODE_6316_length_516_cov_24.010127_pilon to pilon.fasta [pilon] Writing NODE_6317_length_516_cov_19.906329:1-516 changes to pilon.changes [pilon] Writing updated NODE_6317_length_516_cov_19.906329_pilon to pilon.fasta [pilon] Writing NODE_6318_length_516_cov_13.430380:1-516 changes to pilon.changes [pilon] Writing updated NODE_6318_length_516_cov_13.430380_pilon to pilon.fasta [pilon] Writing NODE_6319_length_516_cov_1.387342:1-516 changes to pilon.changes [pilon] Writing updated NODE_6319_length_516_cov_1.387342_pilon to pilon.fasta [pilon] Writing NODE_6320_length_516_cov_0.612658:1-516 changes to pilon.changes [pilon] Writing updated NODE_6320_length_516_cov_0.612658_pilon to pilon.fasta [pilon] Writing NODE_6321_length_516_cov_0.577215:1-516 changes to pilon.changes [pilon] Writing updated NODE_6321_length_516_cov_0.577215_pilon to pilon.fasta [pilon] Writing NODE_6322_length_515_cov_48.840102:1-515 changes to pilon.changes [pilon] Writing updated NODE_6322_length_515_cov_48.840102_pilon to pilon.fasta [pilon] Writing NODE_6323_length_515_cov_18.637056:1-515 changes to pilon.changes [pilon] Writing updated NODE_6323_length_515_cov_18.637056_pilon to pilon.fasta [pilon] Writing NODE_6324_length_515_cov_17.647208:1-515 changes to pilon.changes [pilon] Writing updated NODE_6324_length_515_cov_17.647208_pilon to pilon.fasta [pilon] Writing NODE_6325_length_515_cov_17.609137:1-515 changes to pilon.changes [pilon] Writing updated NODE_6325_length_515_cov_17.609137_pilon to pilon.fasta [pilon] Writing NODE_6326_length_515_cov_16.068528:1-515 changes to pilon.changes [pilon] Writing updated NODE_6326_length_515_cov_16.068528_pilon to pilon.fasta [pilon] Writing NODE_6327_length_515_cov_12.883249:1-515 changes to pilon.changes [pilon] Writing updated NODE_6327_length_515_cov_12.883249_pilon to pilon.fasta [pilon] Writing NODE_6328_length_515_cov_11.954315:1-515 changes to pilon.changes [pilon] Writing updated NODE_6328_length_515_cov_11.954315_pilon to pilon.fasta [pilon] Writing NODE_6329_length_515_cov_10.639594:1-515 changes to pilon.changes [pilon] Writing updated NODE_6329_length_515_cov_10.639594_pilon to pilon.fasta [pilon] Writing NODE_6330_length_515_cov_3.487310:1-515 changes to pilon.changes [pilon] Writing updated NODE_6330_length_515_cov_3.487310_pilon to pilon.fasta [pilon] Writing NODE_6331_length_515_cov_2.477157:1-515 changes to pilon.changes [pilon] Writing updated NODE_6331_length_515_cov_2.477157_pilon to pilon.fasta [pilon] Writing NODE_6332_length_515_cov_1.784264:1-515 changes to pilon.changes [pilon] Writing updated NODE_6332_length_515_cov_1.784264_pilon to pilon.fasta [pilon] Writing NODE_6333_length_515_cov_1.774112:1-515 changes to pilon.changes [pilon] Writing updated NODE_6333_length_515_cov_1.774112_pilon to pilon.fasta [pilon] Writing NODE_6334_length_515_cov_1.568528:1-515 changes to pilon.changes [pilon] Writing updated NODE_6334_length_515_cov_1.568528_pilon to pilon.fasta [pilon] Writing NODE_6335_length_515_cov_1.294416:1-515 changes to pilon.changes [pilon] Writing updated NODE_6335_length_515_cov_1.294416_pilon to pilon.fasta [pilon] Writing NODE_6336_length_514_cov_43.498728:1-514 changes to pilon.changes [pilon] Writing updated NODE_6336_length_514_cov_43.498728_pilon to pilon.fasta [pilon] Writing NODE_6337_length_514_cov_36.977099:1-514 changes to pilon.changes [pilon] Writing updated NODE_6337_length_514_cov_36.977099_pilon to pilon.fasta [pilon] Writing NODE_6338_length_514_cov_22.473282:1-514 changes to pilon.changes [pilon] Writing updated NODE_6338_length_514_cov_22.473282_pilon to pilon.fasta [pilon] Writing NODE_6339_length_514_cov_21.302799:1-514 changes to pilon.changes [pilon] Writing updated NODE_6339_length_514_cov_21.302799_pilon to pilon.fasta [pilon] Writing NODE_6340_length_514_cov_20.557252:1-514 changes to pilon.changes [pilon] Writing updated NODE_6340_length_514_cov_20.557252_pilon to pilon.fasta [pilon] Writing NODE_6341_length_514_cov_19.231552:1-514 changes to pilon.changes [pilon] Writing updated NODE_6341_length_514_cov_19.231552_pilon to pilon.fasta [pilon] Writing NODE_6342_length_514_cov_19.221374:1-514 changes to pilon.changes [pilon] Writing updated NODE_6342_length_514_cov_19.221374_pilon to pilon.fasta [pilon] Writing NODE_6343_length_514_cov_17.905852:1-514 changes to pilon.changes [pilon] Writing updated NODE_6343_length_514_cov_17.905852_pilon to pilon.fasta [pilon] Writing NODE_6344_length_514_cov_10.101781:1-514 changes to pilon.changes [pilon] Writing updated NODE_6344_length_514_cov_10.101781_pilon to pilon.fasta [pilon] Writing NODE_6345_length_514_cov_9.648855:1-514 changes to pilon.changes [pilon] Writing updated NODE_6345_length_514_cov_9.648855_pilon to pilon.fasta [pilon] Writing NODE_6346_length_514_cov_7.569975:1-514 changes to pilon.changes [pilon] Writing updated NODE_6346_length_514_cov_7.569975_pilon to pilon.fasta [pilon] Writing NODE_6347_length_514_cov_2.198473:1-514 changes to pilon.changes [pilon] Writing updated NODE_6347_length_514_cov_2.198473_pilon to pilon.fasta [pilon] Writing NODE_6348_length_514_cov_1.862595:1-514 changes to pilon.changes [pilon] Writing updated NODE_6348_length_514_cov_1.862595_pilon to pilon.fasta [pilon] Writing NODE_6349_length_514_cov_0.974555:1-514 changes to pilon.changes [pilon] Writing updated NODE_6349_length_514_cov_0.974555_pilon to pilon.fasta [pilon] Writing NODE_6350_length_514_cov_0.893130:1-514 changes to pilon.changes [pilon] Writing updated NODE_6350_length_514_cov_0.893130_pilon to pilon.fasta [pilon] Writing NODE_6351_length_513_cov_34.596939:1-513 changes to pilon.changes [pilon] Writing updated NODE_6351_length_513_cov_34.596939_pilon to pilon.fasta [pilon] Writing NODE_6352_length_513_cov_32.630102:1-513 changes to pilon.changes [pilon] Writing updated NODE_6352_length_513_cov_32.630102_pilon to pilon.fasta [pilon] Writing NODE_6353_length_513_cov_27.982143:1-513 changes to pilon.changes [pilon] Writing updated NODE_6353_length_513_cov_27.982143_pilon to pilon.fasta [pilon] Writing NODE_6354_length_513_cov_26.627551:1-513 changes to pilon.changes [pilon] Writing updated NODE_6354_length_513_cov_26.627551_pilon to pilon.fasta [pilon] Writing NODE_6355_length_513_cov_23.553571:1-513 changes to pilon.changes [pilon] Writing updated NODE_6355_length_513_cov_23.553571_pilon to pilon.fasta [pilon] Writing NODE_6356_length_513_cov_21.316327:1-513 changes to pilon.changes [pilon] Writing updated NODE_6356_length_513_cov_21.316327_pilon to pilon.fasta [pilon] Writing NODE_6357_length_513_cov_18.533163:1-513 changes to pilon.changes [pilon] Writing updated NODE_6357_length_513_cov_18.533163_pilon to pilon.fasta [pilon] Writing NODE_6358_length_513_cov_11.505102:1-513 changes to pilon.changes [pilon] Writing updated NODE_6358_length_513_cov_11.505102_pilon to pilon.fasta [pilon] Writing NODE_6359_length_513_cov_5.464286:1-513 changes to pilon.changes [pilon] Writing updated NODE_6359_length_513_cov_5.464286_pilon to pilon.fasta [pilon] Writing NODE_6360_length_513_cov_5.448980:1-513 changes to pilon.changes [pilon] Writing updated NODE_6360_length_513_cov_5.448980_pilon to pilon.fasta [pilon] Writing NODE_6361_length_513_cov_3.992347:1-513 changes to pilon.changes [pilon] Writing updated NODE_6361_length_513_cov_3.992347_pilon to pilon.fasta [pilon] Writing NODE_6362_length_513_cov_2.339286:1-513 changes to pilon.changes [pilon] Writing updated NODE_6362_length_513_cov_2.339286_pilon to pilon.fasta [pilon] Writing NODE_6363_length_513_cov_1.298469:1-513 changes to pilon.changes [pilon] Writing updated NODE_6363_length_513_cov_1.298469_pilon to pilon.fasta [pilon] Writing NODE_6364_length_513_cov_1.035714:1-513 changes to pilon.changes [pilon] Writing updated NODE_6364_length_513_cov_1.035714_pilon to pilon.fasta [pilon] Writing NODE_6365_length_513_cov_0.839286:1-513 changes to pilon.changes [pilon] Writing updated NODE_6365_length_513_cov_0.839286_pilon to pilon.fasta [pilon] Writing NODE_6366_length_513_cov_0.829082:1-513 changes to pilon.changes [pilon] Writing updated NODE_6366_length_513_cov_0.829082_pilon to pilon.fasta [pilon] Writing NODE_6367_length_513_cov_0.752551:1-513 changes to pilon.changes [pilon] Writing updated NODE_6367_length_513_cov_0.752551_pilon to pilon.fasta [pilon] Writing NODE_6368_length_512_cov_63.209719:1-512 changes to pilon.changes [pilon] Writing updated NODE_6368_length_512_cov_63.209719_pilon to pilon.fasta [pilon] Writing NODE_6369_length_512_cov_33.892583:1-512 changes to pilon.changes [pilon] Writing updated NODE_6369_length_512_cov_33.892583_pilon to pilon.fasta [pilon] Writing NODE_6370_length_512_cov_29.358056:1-512 changes to pilon.changes [pilon] Writing updated NODE_6370_length_512_cov_29.358056_pilon to pilon.fasta [pilon] Writing NODE_6371_length_512_cov_16.693095:1-512 changes to pilon.changes [pilon] Writing updated NODE_6371_length_512_cov_16.693095_pilon to pilon.fasta [pilon] Writing NODE_6372_length_512_cov_14.795396:1-512 changes to pilon.changes [pilon] Writing updated NODE_6372_length_512_cov_14.795396_pilon to pilon.fasta [pilon] Writing NODE_6373_length_512_cov_13.161125:1-512 changes to pilon.changes [pilon] Writing updated NODE_6373_length_512_cov_13.161125_pilon to pilon.fasta [pilon] Writing NODE_6374_length_512_cov_10.076726:1-512 changes to pilon.changes [pilon] Writing updated NODE_6374_length_512_cov_10.076726_pilon to pilon.fasta [pilon] Writing NODE_6375_length_512_cov_4.040921:1-512 changes to pilon.changes [pilon] Writing updated NODE_6375_length_512_cov_4.040921_pilon to pilon.fasta [pilon] Writing NODE_6376_length_512_cov_3.621483:1-512 changes to pilon.changes [pilon] Writing updated NODE_6376_length_512_cov_3.621483_pilon to pilon.fasta [pilon] Writing NODE_6377_length_512_cov_3.265985:1-512 changes to pilon.changes [pilon] Writing updated NODE_6377_length_512_cov_3.265985_pilon to pilon.fasta [pilon] Writing NODE_6378_length_512_cov_2.496164:1-512 changes to pilon.changes [pilon] Writing updated NODE_6378_length_512_cov_2.496164_pilon to pilon.fasta [pilon] Writing NODE_6379_length_512_cov_1.953964:1-512 changes to pilon.changes [pilon] Writing updated NODE_6379_length_512_cov_1.953964_pilon to pilon.fasta [pilon] Writing NODE_6380_length_512_cov_1.900256:1-512 changes to pilon.changes [pilon] Writing updated NODE_6380_length_512_cov_1.900256_pilon to pilon.fasta [pilon] Writing NODE_6381_length_512_cov_1.687980:1-512 changes to pilon.changes [pilon] Writing updated NODE_6381_length_512_cov_1.687980_pilon to pilon.fasta [pilon] Writing NODE_6382_length_512_cov_0.956522:1-512 changes to pilon.changes [pilon] Writing updated NODE_6382_length_512_cov_0.956522_pilon to pilon.fasta [pilon] Writing NODE_6383_length_512_cov_0.749361:1-512 changes to pilon.changes [pilon] Writing updated NODE_6383_length_512_cov_0.749361_pilon to pilon.fasta [pilon] Writing NODE_6384_length_511_cov_39.320513:1-511 changes to pilon.changes [pilon] Writing updated NODE_6384_length_511_cov_39.320513_pilon to pilon.fasta [pilon] Writing NODE_6385_length_511_cov_19.335897:1-511 changes to pilon.changes [pilon] Writing updated NODE_6385_length_511_cov_19.335897_pilon to pilon.fasta [pilon] Writing NODE_6386_length_511_cov_18.012821:1-511 changes to pilon.changes [pilon] Writing updated NODE_6386_length_511_cov_18.012821_pilon to pilon.fasta [pilon] Writing NODE_6387_length_511_cov_13.966667:1-511 changes to pilon.changes [pilon] Writing updated NODE_6387_length_511_cov_13.966667_pilon to pilon.fasta [pilon] Writing NODE_6388_length_511_cov_13.615385:1-511 changes to pilon.changes [pilon] Writing updated NODE_6388_length_511_cov_13.615385_pilon to pilon.fasta [pilon] Writing NODE_6389_length_511_cov_12.923077:1-511 changes to pilon.changes [pilon] Writing updated NODE_6389_length_511_cov_12.923077_pilon to pilon.fasta [pilon] Writing NODE_6390_length_511_cov_11.043590:1-511 changes to pilon.changes [pilon] Writing updated NODE_6390_length_511_cov_11.043590_pilon to pilon.fasta [pilon] Writing NODE_6391_length_511_cov_7.261538:1-511 changes to pilon.changes [pilon] Writing updated NODE_6391_length_511_cov_7.261538_pilon to pilon.fasta [pilon] Writing NODE_6392_length_511_cov_3.700000:1-511 changes to pilon.changes [pilon] Writing updated NODE_6392_length_511_cov_3.700000_pilon to pilon.fasta [pilon] Writing NODE_6393_length_510_cov_49.359897:1-510 changes to pilon.changes [pilon] Writing updated NODE_6393_length_510_cov_49.359897_pilon to pilon.fasta [pilon] Writing NODE_6394_length_510_cov_45.848329:1-510 changes to pilon.changes [pilon] Writing updated NODE_6394_length_510_cov_45.848329_pilon to pilon.fasta [pilon] Writing NODE_6395_length_510_cov_28.079692:1-510 changes to pilon.changes [pilon] Writing updated NODE_6395_length_510_cov_28.079692_pilon to pilon.fasta [pilon] Writing NODE_6396_length_510_cov_20.848329:1-510 changes to pilon.changes [pilon] Writing updated NODE_6396_length_510_cov_20.848329_pilon to pilon.fasta [pilon] Writing NODE_6397_length_510_cov_19.591260:1-510 changes to pilon.changes [pilon] Writing updated NODE_6397_length_510_cov_19.591260_pilon to pilon.fasta [pilon] Writing NODE_6398_length_510_cov_19.267352:1-510 changes to pilon.changes [pilon] Writing updated NODE_6398_length_510_cov_19.267352_pilon to pilon.fasta [pilon] Writing NODE_6399_length_510_cov_19.123393:1-510 changes to pilon.changes [pilon] Writing updated NODE_6399_length_510_cov_19.123393_pilon to pilon.fasta [pilon] Writing NODE_6400_length_510_cov_18.282776:1-510 changes to pilon.changes [pilon] Writing updated NODE_6400_length_510_cov_18.282776_pilon to pilon.fasta [pilon] Writing NODE_6401_length_510_cov_17.596401:1-510 changes to pilon.changes [pilon] Writing updated NODE_6401_length_510_cov_17.596401_pilon to pilon.fasta [pilon] Writing NODE_6402_length_510_cov_14.591260:1-510 changes to pilon.changes [pilon] Writing updated NODE_6402_length_510_cov_14.591260_pilon to pilon.fasta [pilon] Writing NODE_6403_length_510_cov_13.192802:1-510 changes to pilon.changes [pilon] Writing updated NODE_6403_length_510_cov_13.192802_pilon to pilon.fasta [pilon] Writing NODE_6404_length_510_cov_13.084833:1-510 changes to pilon.changes [pilon] Writing updated NODE_6404_length_510_cov_13.084833_pilon to pilon.fasta [pilon] Writing NODE_6405_length_510_cov_12.969152:1-510 changes to pilon.changes [pilon] Writing updated NODE_6405_length_510_cov_12.969152_pilon to pilon.fasta [pilon] Writing NODE_6406_length_510_cov_12.691517:1-510 changes to pilon.changes [pilon] Writing updated NODE_6406_length_510_cov_12.691517_pilon to pilon.fasta [pilon] Writing NODE_6407_length_510_cov_12.470437:1-510 changes to pilon.changes [pilon] Writing updated NODE_6407_length_510_cov_12.470437_pilon to pilon.fasta [pilon] Writing NODE_6408_length_510_cov_9.976864:1-510 changes to pilon.changes [pilon] Writing updated NODE_6408_length_510_cov_9.976864_pilon to pilon.fasta [pilon] Writing NODE_6409_length_510_cov_4.838046:1-510 changes to pilon.changes [pilon] Writing updated NODE_6409_length_510_cov_4.838046_pilon to pilon.fasta [pilon] Writing NODE_6410_length_510_cov_2.838046:1-510 changes to pilon.changes [pilon] Writing updated NODE_6410_length_510_cov_2.838046_pilon to pilon.fasta [pilon] Writing NODE_6411_length_510_cov_1.969152:1-510 changes to pilon.changes [pilon] Writing updated NODE_6411_length_510_cov_1.969152_pilon to pilon.fasta [pilon] Writing NODE_6412_length_510_cov_1.791774:1-510 changes to pilon.changes [pilon] Writing updated NODE_6412_length_510_cov_1.791774_pilon to pilon.fasta [pilon] Writing NODE_6413_length_510_cov_1.416452:1-510 changes to pilon.changes [pilon] Writing updated NODE_6413_length_510_cov_1.416452_pilon to pilon.fasta [pilon] Writing NODE_6414_length_510_cov_1.318766:1-510 changes to pilon.changes [pilon] Writing updated NODE_6414_length_510_cov_1.318766_pilon to pilon.fasta [pilon] Writing NODE_6415_length_510_cov_1.233933:1-510 changes to pilon.changes [pilon] Writing updated NODE_6415_length_510_cov_1.233933_pilon to pilon.fasta [pilon] Writing NODE_6416_length_510_cov_0.820051:1-510 changes to pilon.changes [pilon] Writing updated NODE_6416_length_510_cov_0.820051_pilon to pilon.fasta [pilon] Writing NODE_6417_length_510_cov_0.557841:1-510 changes to pilon.changes [pilon] Writing updated NODE_6417_length_510_cov_0.557841_pilon to pilon.fasta [pilon] Writing NODE_6418_length_510_cov_0.529563:1-510 changes to pilon.changes [pilon] Writing updated NODE_6418_length_510_cov_0.529563_pilon to pilon.fasta [pilon] Writing NODE_6419_length_509_cov_47.440722:1-509 changes to pilon.changes [pilon] Writing updated NODE_6419_length_509_cov_47.440722_pilon to pilon.fasta [pilon] Writing NODE_6420_length_509_cov_27.927835:1-509 changes to pilon.changes [pilon] Writing updated NODE_6420_length_509_cov_27.927835_pilon to pilon.fasta [pilon] Writing NODE_6421_length_509_cov_2.969072:1-509 changes to pilon.changes [pilon] Writing updated NODE_6421_length_509_cov_2.969072_pilon to pilon.fasta [pilon] Writing NODE_6422_length_509_cov_1.873711:1-509 changes to pilon.changes [pilon] Writing updated NODE_6422_length_509_cov_1.873711_pilon to pilon.fasta [pilon] Writing NODE_6423_length_509_cov_1.731959:1-509 changes to pilon.changes [pilon] Writing updated NODE_6423_length_509_cov_1.731959_pilon to pilon.fasta [pilon] Writing NODE_6424_length_509_cov_1.626289:1-509 changes to pilon.changes [pilon] Writing updated NODE_6424_length_509_cov_1.626289_pilon to pilon.fasta [pilon] Writing NODE_6425_length_509_cov_0.837629:1-509 changes to pilon.changes [pilon] Writing updated NODE_6425_length_509_cov_0.837629_pilon to pilon.fasta [pilon] Writing NODE_6426_length_508_cov_27.271318:1-508 changes to pilon.changes [pilon] Writing updated NODE_6426_length_508_cov_27.271318_pilon to pilon.fasta [pilon] Writing NODE_6427_length_508_cov_14.506460:1-508 changes to pilon.changes [pilon] Writing updated NODE_6427_length_508_cov_14.506460_pilon to pilon.fasta [pilon] Writing NODE_6428_length_508_cov_6.834625:1-508 changes to pilon.changes [pilon] Writing updated NODE_6428_length_508_cov_6.834625_pilon to pilon.fasta [pilon] Writing NODE_6429_length_508_cov_6.736434:1-508 changes to pilon.changes [pilon] Writing updated NODE_6429_length_508_cov_6.736434_pilon to pilon.fasta [pilon] Writing NODE_6430_length_508_cov_3.540052:1-508 changes to pilon.changes [pilon] Writing updated NODE_6430_length_508_cov_3.540052_pilon to pilon.fasta [pilon] Writing NODE_6431_length_508_cov_3.472868:1-508 changes to pilon.changes [pilon] Writing updated NODE_6431_length_508_cov_3.472868_pilon to pilon.fasta [pilon] Writing NODE_6432_length_508_cov_2.217054:1-508 changes to pilon.changes [pilon] Writing updated NODE_6432_length_508_cov_2.217054_pilon to pilon.fasta [pilon] Writing NODE_6433_length_508_cov_1.196382:1-508 changes to pilon.changes [pilon] Writing updated NODE_6433_length_508_cov_1.196382_pilon to pilon.fasta [pilon] Writing NODE_6434_length_508_cov_0.478036:1-508 changes to pilon.changes [pilon] Writing updated NODE_6434_length_508_cov_0.478036_pilon to pilon.fasta [pilon] Writing NODE_6435_length_507_cov_31.243523:1-507 changes to pilon.changes [pilon] Writing updated NODE_6435_length_507_cov_31.243523_pilon to pilon.fasta [pilon] Writing NODE_6436_length_507_cov_30.269430:1-507 changes to pilon.changes [pilon] Writing updated NODE_6436_length_507_cov_30.269430_pilon to pilon.fasta [pilon] Writing NODE_6437_length_507_cov_29.264249:1-507 changes to pilon.changes [pilon] Writing updated NODE_6437_length_507_cov_29.264249_pilon to pilon.fasta [pilon] Writing NODE_6438_length_507_cov_25.544041:1-507 changes to pilon.changes [pilon] Writing updated NODE_6438_length_507_cov_25.544041_pilon to pilon.fasta [pilon] Writing NODE_6439_length_507_cov_24.556995:1-507 changes to pilon.changes [pilon] Writing updated NODE_6439_length_507_cov_24.556995_pilon to pilon.fasta [pilon] Writing NODE_6440_length_507_cov_23.531088:1-507 changes to pilon.changes [pilon] Writing updated NODE_6440_length_507_cov_23.531088_pilon to pilon.fasta [pilon] Writing NODE_6441_length_507_cov_22.624352:1-507 changes to pilon.changes [pilon] Writing updated NODE_6441_length_507_cov_22.624352_pilon to pilon.fasta [pilon] Writing NODE_6442_length_507_cov_21.639896:1-507 changes to pilon.changes [pilon] Writing updated NODE_6442_length_507_cov_21.639896_pilon to pilon.fasta [pilon] Writing NODE_6443_length_507_cov_21.049223:1-507 changes to pilon.changes [pilon] Writing updated NODE_6443_length_507_cov_21.049223_pilon to pilon.fasta [pilon] Writing NODE_6444_length_507_cov_19.727979:1-507 changes to pilon.changes [pilon] Writing updated NODE_6444_length_507_cov_19.727979_pilon to pilon.fasta [pilon] Writing NODE_6445_length_507_cov_18.948187:1-507 changes to pilon.changes [pilon] Writing updated NODE_6445_length_507_cov_18.948187_pilon to pilon.fasta [pilon] Writing NODE_6446_length_507_cov_17.406736:1-507 changes to pilon.changes [pilon] Writing updated NODE_6446_length_507_cov_17.406736_pilon to pilon.fasta [pilon] Writing NODE_6447_length_507_cov_16.101036:1-507 changes to pilon.changes [pilon] Writing updated NODE_6447_length_507_cov_16.101036_pilon to pilon.fasta [pilon] Writing NODE_6448_length_507_cov_14.417098:1-507 changes to pilon.changes [pilon] Writing updated NODE_6448_length_507_cov_14.417098_pilon to pilon.fasta [pilon] Writing NODE_6449_length_507_cov_11.689119:1-507 changes to pilon.changes [pilon] Writing updated NODE_6449_length_507_cov_11.689119_pilon to pilon.fasta [pilon] Writing NODE_6450_length_507_cov_10.443005:1-507 changes to pilon.changes [pilon] Writing updated NODE_6450_length_507_cov_10.443005_pilon to pilon.fasta [pilon] Writing NODE_6451_length_507_cov_8.984456:1-507 changes to pilon.changes [pilon] Writing updated NODE_6451_length_507_cov_8.984456_pilon to pilon.fasta [pilon] Writing NODE_6452_length_507_cov_8.129534:1-507 changes to pilon.changes [pilon] Writing updated NODE_6452_length_507_cov_8.129534_pilon to pilon.fasta [pilon] Writing NODE_6453_length_507_cov_7.753886:1-507 changes to pilon.changes [pilon] Writing updated NODE_6453_length_507_cov_7.753886_pilon to pilon.fasta [pilon] Writing NODE_6454_length_507_cov_7.062176:1-507 changes to pilon.changes [pilon] Writing updated NODE_6454_length_507_cov_7.062176_pilon to pilon.fasta [pilon] Writing NODE_6455_length_507_cov_0.875648:1-507 changes to pilon.changes [pilon] Writing updated NODE_6455_length_507_cov_0.875648_pilon to pilon.fasta [pilon] Writing NODE_6456_length_507_cov_0.844560:1-507 changes to pilon.changes [pilon] Writing updated NODE_6456_length_507_cov_0.844560_pilon to pilon.fasta [pilon] Writing NODE_6457_length_507_cov_0.707254:1-507 changes to pilon.changes [pilon] Writing updated NODE_6457_length_507_cov_0.707254_pilon to pilon.fasta [pilon] Writing NODE_6458_length_507_cov_0.663212:1-507 changes to pilon.changes [pilon] Writing updated NODE_6458_length_507_cov_0.663212_pilon to pilon.fasta [pilon] Writing NODE_6459_length_506_cov_41.854545:1-506 changes to pilon.changes [pilon] Writing updated NODE_6459_length_506_cov_41.854545_pilon to pilon.fasta [pilon] Writing NODE_6460_length_506_cov_41.397403:1-506 changes to pilon.changes [pilon] Writing updated NODE_6460_length_506_cov_41.397403_pilon to pilon.fasta [pilon] Writing NODE_6461_length_506_cov_31.610390:1-506 changes to pilon.changes [pilon] Writing updated NODE_6461_length_506_cov_31.610390_pilon to pilon.fasta [pilon] Writing NODE_6462_length_506_cov_11.496104:1-506 changes to pilon.changes [pilon] Writing updated NODE_6462_length_506_cov_11.496104_pilon to pilon.fasta [pilon] Writing NODE_6463_length_506_cov_10.488312:1-506 changes to pilon.changes [pilon] Writing updated NODE_6463_length_506_cov_10.488312_pilon to pilon.fasta [pilon] Writing NODE_6464_length_506_cov_5.641558:1-506 changes to pilon.changes [pilon] Writing updated NODE_6464_length_506_cov_5.641558_pilon to pilon.fasta [pilon] Writing NODE_6465_length_506_cov_4.228571:1-506 changes to pilon.changes [pilon] Writing updated NODE_6465_length_506_cov_4.228571_pilon to pilon.fasta [pilon] Writing NODE_6466_length_506_cov_3.194805:1-506 changes to pilon.changes [pilon] Writing updated NODE_6466_length_506_cov_3.194805_pilon to pilon.fasta [pilon] Writing NODE_6467_length_506_cov_3.062338:1-506 changes to pilon.changes [pilon] Writing updated NODE_6467_length_506_cov_3.062338_pilon to pilon.fasta [pilon] Writing NODE_6468_length_506_cov_1.007792:1-506 changes to pilon.changes [pilon] Writing updated NODE_6468_length_506_cov_1.007792_pilon to pilon.fasta [pilon] Writing NODE_6469_length_505_cov_61.848958:1-505 changes to pilon.changes [pilon] Writing updated NODE_6469_length_505_cov_61.848958_pilon to pilon.fasta [pilon] Writing NODE_6470_length_505_cov_51.341146:1-505 changes to pilon.changes [pilon] Writing updated NODE_6470_length_505_cov_51.341146_pilon to pilon.fasta [pilon] Writing NODE_6471_length_505_cov_46.578125:1-505 changes to pilon.changes [pilon] Writing updated NODE_6471_length_505_cov_46.578125_pilon to pilon.fasta [pilon] Writing NODE_6472_length_505_cov_38.934896:1-505 changes to pilon.changes [pilon] Writing updated NODE_6472_length_505_cov_38.934896_pilon to pilon.fasta [pilon] Writing NODE_6473_length_505_cov_30.781250:1-505 changes to pilon.changes [pilon] Writing updated NODE_6473_length_505_cov_30.781250_pilon to pilon.fasta [pilon] Writing NODE_6474_length_505_cov_21.770833:1-505 changes to pilon.changes [pilon] Writing updated NODE_6474_length_505_cov_21.770833_pilon to pilon.fasta [pilon] Writing NODE_6475_length_505_cov_17.690104:1-505 changes to pilon.changes [pilon] Writing updated NODE_6475_length_505_cov_17.690104_pilon to pilon.fasta [pilon] Writing NODE_6476_length_505_cov_8.239583:1-505 changes to pilon.changes [pilon] Writing updated NODE_6476_length_505_cov_8.239583_pilon to pilon.fasta [pilon] Writing NODE_6477_length_505_cov_7.145833:1-505 changes to pilon.changes [pilon] Writing updated NODE_6477_length_505_cov_7.145833_pilon to pilon.fasta [pilon] Writing NODE_6478_length_505_cov_6.203125:1-505 changes to pilon.changes [pilon] Writing updated NODE_6478_length_505_cov_6.203125_pilon to pilon.fasta [pilon] Writing NODE_6479_length_505_cov_3.585938:1-505 changes to pilon.changes [pilon] Writing updated NODE_6479_length_505_cov_3.585938_pilon to pilon.fasta [pilon] Writing NODE_6480_length_505_cov_2.617188:1-505 changes to pilon.changes [pilon] Writing updated NODE_6480_length_505_cov_2.617188_pilon to pilon.fasta [pilon] Writing NODE_6481_length_505_cov_1.914062:1-505 changes to pilon.changes [pilon] Writing updated NODE_6481_length_505_cov_1.914062_pilon to pilon.fasta [pilon] Writing NODE_6482_length_504_cov_50.885117:1-504 changes to pilon.changes [pilon] Writing updated NODE_6482_length_504_cov_50.885117_pilon to pilon.fasta [pilon] Writing NODE_6483_length_504_cov_28.250653:1-504 changes to pilon.changes [pilon] Writing updated NODE_6483_length_504_cov_28.250653_pilon to pilon.fasta [pilon] Writing NODE_6484_length_504_cov_25.953003:1-504 changes to pilon.changes [pilon] Writing updated NODE_6484_length_504_cov_25.953003_pilon to pilon.fasta [pilon] Writing NODE_6485_length_504_cov_21.159269:1-504 changes to pilon.changes [pilon] Writing updated NODE_6485_length_504_cov_21.159269_pilon to pilon.fasta [pilon] Writing NODE_6486_length_504_cov_19.496084:1-504 changes to pilon.changes [pilon] Writing updated NODE_6486_length_504_cov_19.496084_pilon to pilon.fasta [pilon] Writing NODE_6487_length_504_cov_18.590078:1-504 changes to pilon.changes [pilon] Writing updated NODE_6487_length_504_cov_18.590078_pilon to pilon.fasta [pilon] Writing NODE_6488_length_504_cov_16.971279:1-504 changes to pilon.changes [pilon] Writing updated NODE_6488_length_504_cov_16.971279_pilon to pilon.fasta [pilon] Writing NODE_6489_length_504_cov_14.075718:1-504 changes to pilon.changes [pilon] Writing updated NODE_6489_length_504_cov_14.075718_pilon to pilon.fasta [pilon] Writing NODE_6490_length_504_cov_13.407311:1-504 changes to pilon.changes [pilon] Writing updated NODE_6490_length_504_cov_13.407311_pilon to pilon.fasta [pilon] Writing NODE_6491_length_504_cov_12.443864:1-504 changes to pilon.changes [pilon] Writing updated NODE_6491_length_504_cov_12.443864_pilon to pilon.fasta [pilon] Writing NODE_6492_length_504_cov_11.454308:1-504 changes to pilon.changes [pilon] Writing updated NODE_6492_length_504_cov_11.454308_pilon to pilon.fasta [pilon] Writing NODE_6493_length_504_cov_11.441253:1-504 changes to pilon.changes [pilon] Writing updated NODE_6493_length_504_cov_11.441253_pilon to pilon.fasta [pilon] Writing NODE_6494_length_504_cov_10.699739:1-504 changes to pilon.changes [pilon] Writing updated NODE_6494_length_504_cov_10.699739_pilon to pilon.fasta [pilon] Writing NODE_6495_length_504_cov_10.274151:1-504 changes to pilon.changes [pilon] Writing updated NODE_6495_length_504_cov_10.274151_pilon to pilon.fasta [pilon] Writing NODE_6496_length_504_cov_10.195822:1-504 changes to pilon.changes [pilon] Writing updated NODE_6496_length_504_cov_10.195822_pilon to pilon.fasta [pilon] Writing NODE_6497_length_504_cov_8.436031:1-504 changes to pilon.changes [pilon] Writing updated NODE_6497_length_504_cov_8.436031_pilon to pilon.fasta [pilon] Writing NODE_6498_length_504_cov_7.934726:1-504 changes to pilon.changes [pilon] Writing updated NODE_6498_length_504_cov_7.934726_pilon to pilon.fasta [pilon] Writing NODE_6499_length_504_cov_7.691906:1-504 changes to pilon.changes [pilon] Writing updated NODE_6499_length_504_cov_7.691906_pilon to pilon.fasta [pilon] Writing NODE_6500_length_504_cov_2.026110:1-504 changes to pilon.changes [pilon] Writing updated NODE_6500_length_504_cov_2.026110_pilon to pilon.fasta [pilon] Writing NODE_6501_length_504_cov_1.185379:1-504 changes to pilon.changes [pilon] Writing updated NODE_6501_length_504_cov_1.185379_pilon to pilon.fasta [pilon] Writing NODE_6502_length_504_cov_0.770235:1-504 changes to pilon.changes [pilon] Writing updated NODE_6502_length_504_cov_0.770235_pilon to pilon.fasta [pilon] Writing NODE_6503_length_503_cov_31.937173:1-503 changes to pilon.changes [pilon] Writing updated NODE_6503_length_503_cov_31.937173_pilon to pilon.fasta [pilon] Writing NODE_6504_length_503_cov_30.060209:1-503 changes to pilon.changes [pilon] Writing updated NODE_6504_length_503_cov_30.060209_pilon to pilon.fasta [pilon] Writing NODE_6505_length_503_cov_29.620419:1-503 changes to pilon.changes [pilon] Writing updated NODE_6505_length_503_cov_29.620419_pilon to pilon.fasta [pilon] Writing NODE_6506_length_503_cov_25.366492:1-503 changes to pilon.changes [pilon] Writing updated NODE_6506_length_503_cov_25.366492_pilon to pilon.fasta [pilon] Writing NODE_6507_length_503_cov_19.853403:1-503 changes to pilon.changes [pilon] Writing updated NODE_6507_length_503_cov_19.853403_pilon to pilon.fasta [pilon] Writing NODE_6508_length_503_cov_19.628272:1-503 changes to pilon.changes [pilon] Writing updated NODE_6508_length_503_cov_19.628272_pilon to pilon.fasta [pilon] Writing NODE_6509_length_503_cov_12.437173:1-503 changes to pilon.changes [pilon] Writing updated NODE_6509_length_503_cov_12.437173_pilon to pilon.fasta [pilon] Writing NODE_6510_length_503_cov_11.500000:1-503 changes to pilon.changes [pilon] Writing updated NODE_6510_length_503_cov_11.500000_pilon to pilon.fasta [pilon] Writing NODE_6511_length_503_cov_7.196335:1-503 changes to pilon.changes [pilon] Writing updated NODE_6511_length_503_cov_7.196335_pilon to pilon.fasta [pilon] Writing NODE_6512_length_503_cov_2.984293:1-503 changes to pilon.changes [pilon] Writing updated NODE_6512_length_503_cov_2.984293_pilon to pilon.fasta [pilon] Writing NODE_6513_length_503_cov_2.227749:1-503 changes to pilon.changes [pilon] Writing updated NODE_6513_length_503_cov_2.227749_pilon to pilon.fasta [pilon] Writing NODE_6514_length_502_cov_35.286089:1-502 changes to pilon.changes [pilon] Writing updated NODE_6514_length_502_cov_35.286089_pilon to pilon.fasta [pilon] Writing NODE_6515_length_502_cov_30.459318:1-502 changes to pilon.changes [pilon] Writing updated NODE_6515_length_502_cov_30.459318_pilon to pilon.fasta [pilon] Writing NODE_6516_length_502_cov_23.553806:1-502 changes to pilon.changes [pilon] Writing updated NODE_6516_length_502_cov_23.553806_pilon to pilon.fasta [pilon] Writing NODE_6517_length_502_cov_19.023622:1-502 changes to pilon.changes [pilon] Writing updated NODE_6517_length_502_cov_19.023622_pilon to pilon.fasta [pilon] Writing NODE_6518_length_502_cov_8.892388:1-502 changes to pilon.changes [pilon] Writing updated NODE_6518_length_502_cov_8.892388_pilon to pilon.fasta [pilon] Writing NODE_6519_length_502_cov_4.183727:1-502 changes to pilon.changes [pilon] Writing updated NODE_6519_length_502_cov_4.183727_pilon to pilon.fasta [pilon] Writing NODE_6520_length_502_cov_2.212598:1-502 changes to pilon.changes [pilon] Writing updated NODE_6520_length_502_cov_2.212598_pilon to pilon.fasta [pilon] Writing NODE_6521_length_502_cov_1.874016:1-502 changes to pilon.changes [pilon] Writing updated NODE_6521_length_502_cov_1.874016_pilon to pilon.fasta [pilon] Writing NODE_6522_length_502_cov_1.577428:1-502 changes to pilon.changes [pilon] Writing updated NODE_6522_length_502_cov_1.577428_pilon to pilon.fasta [pilon] Writing NODE_6523_length_502_cov_1.356955:1-502 changes to pilon.changes [pilon] Writing updated NODE_6523_length_502_cov_1.356955_pilon to pilon.fasta [pilon] Writing NODE_6524_length_502_cov_1.346457:1-502 changes to pilon.changes [pilon] Writing updated NODE_6524_length_502_cov_1.346457_pilon to pilon.fasta [pilon] Writing NODE_6525_length_502_cov_1.057743:1-502 changes to pilon.changes [pilon] Writing updated NODE_6525_length_502_cov_1.057743_pilon to pilon.fasta [pilon] Writing NODE_6526_length_502_cov_0.645669:1-502 changes to pilon.changes [pilon] Writing updated NODE_6526_length_502_cov_0.645669_pilon to pilon.fasta [pilon] Writing NODE_6527_length_501_cov_39.663158:1-501 changes to pilon.changes [pilon] Writing updated NODE_6527_length_501_cov_39.663158_pilon to pilon.fasta [pilon] Writing NODE_6528_length_501_cov_32.142105:1-501 changes to pilon.changes [pilon] Writing updated NODE_6528_length_501_cov_32.142105_pilon to pilon.fasta [pilon] Writing NODE_6529_length_501_cov_22.192105:1-501 changes to pilon.changes [pilon] Writing updated NODE_6529_length_501_cov_22.192105_pilon to pilon.fasta [pilon] Writing NODE_6530_length_501_cov_21.536842:1-501 changes to pilon.changes [pilon] Writing updated NODE_6530_length_501_cov_21.536842_pilon to pilon.fasta [pilon] Writing NODE_6531_length_501_cov_19.386842:1-501 changes to pilon.changes [pilon] Writing updated NODE_6531_length_501_cov_19.386842_pilon to pilon.fasta [pilon] Writing NODE_6532_length_501_cov_18.831579:1-501 changes to pilon.changes [pilon] Writing updated NODE_6532_length_501_cov_18.831579_pilon to pilon.fasta [pilon] Writing NODE_6533_length_501_cov_18.450000:1-501 changes to pilon.changes [pilon] Writing updated NODE_6533_length_501_cov_18.450000_pilon to pilon.fasta [pilon] Writing NODE_6534_length_501_cov_16.673684:1-501 changes to pilon.changes [pilon] Writing updated NODE_6534_length_501_cov_16.673684_pilon to pilon.fasta [pilon] Writing NODE_6535_length_501_cov_16.021053:1-501 changes to pilon.changes [pilon] Writing updated NODE_6535_length_501_cov_16.021053_pilon to pilon.fasta [pilon] Writing NODE_6536_length_501_cov_16.005263:1-501 changes to pilon.changes [pilon] Writing updated NODE_6536_length_501_cov_16.005263_pilon to pilon.fasta [pilon] Writing NODE_6537_length_501_cov_15.336842:1-501 changes to pilon.changes [pilon] Writing updated NODE_6537_length_501_cov_15.336842_pilon to pilon.fasta [pilon] Writing NODE_6538_length_501_cov_10.255263:1-501 changes to pilon.changes [pilon] Writing updated NODE_6538_length_501_cov_10.255263_pilon to pilon.fasta [pilon] Writing NODE_6539_length_501_cov_2.605263:1-501 changes to pilon.changes [pilon] Writing updated NODE_6539_length_501_cov_2.605263_pilon to pilon.fasta [pilon] Writing NODE_6540_length_501_cov_2.597368:1-501 changes to pilon.changes [pilon] Writing updated NODE_6540_length_501_cov_2.597368_pilon to pilon.fasta [pilon] Writing NODE_6541_length_501_cov_1.439474:1-501 changes to pilon.changes [pilon] Writing updated NODE_6541_length_501_cov_1.439474_pilon to pilon.fasta [pilon] Writing NODE_6542_length_501_cov_1.373684:1-501 changes to pilon.changes [pilon] Writing updated NODE_6542_length_501_cov_1.373684_pilon to pilon.fasta [pilon] Writing NODE_6543_length_501_cov_1.234211:1-501 changes to pilon.changes [pilon] Writing updated NODE_6543_length_501_cov_1.234211_pilon to pilon.fasta [pilon] Writing NODE_6544_length_501_cov_0.644737:1-501 changes to pilon.changes [pilon] Writing updated NODE_6544_length_501_cov_0.644737_pilon to pilon.fasta [pilon] Writing NODE_6545_length_500_cov_68.686016:1-500 changes to pilon.changes [pilon] Writing updated NODE_6545_length_500_cov_68.686016_pilon to pilon.fasta [pilon] Writing NODE_6546_length_500_cov_54.187335:1-500 changes to pilon.changes [pilon] Writing updated NODE_6546_length_500_cov_54.187335_pilon to pilon.fasta [pilon] Writing NODE_6547_length_500_cov_53.567282:1-500 changes to pilon.changes [pilon] Writing updated NODE_6547_length_500_cov_53.567282_pilon to pilon.fasta [pilon] Writing NODE_6548_length_500_cov_34.197889:1-500 changes to pilon.changes [pilon] Writing updated NODE_6548_length_500_cov_34.197889_pilon to pilon.fasta [pilon] Writing NODE_6549_length_500_cov_33.266491:1-500 changes to pilon.changes [pilon] Writing updated NODE_6549_length_500_cov_33.266491_pilon to pilon.fasta [pilon] Writing NODE_6550_length_500_cov_29.448549:1-500 changes to pilon.changes [pilon] Writing updated NODE_6550_length_500_cov_29.448549_pilon to pilon.fasta [pilon] Writing NODE_6551_length_500_cov_28.385224:1-500 changes to pilon.changes [pilon] Writing updated NODE_6551_length_500_cov_28.385224_pilon to pilon.fasta [pilon] Writing NODE_6552_length_500_cov_23.419525:1-500 changes to pilon.changes [pilon] Writing updated NODE_6552_length_500_cov_23.419525_pilon to pilon.fasta [pilon] Writing NODE_6553_length_500_cov_22.889182:1-500 changes to pilon.changes [pilon] Writing updated NODE_6553_length_500_cov_22.889182_pilon to pilon.fasta [pilon] Writing NODE_6554_length_500_cov_15.699208:1-500 changes to pilon.changes [pilon] Writing updated NODE_6554_length_500_cov_15.699208_pilon to pilon.fasta [pilon] Writing NODE_6555_length_500_cov_11.678100:1-500 changes to pilon.changes [pilon] Writing updated NODE_6555_length_500_cov_11.678100_pilon to pilon.fasta [pilon] Writing NODE_6556_length_500_cov_3.591029:1-500 changes to pilon.changes [pilon] Writing updated NODE_6556_length_500_cov_3.591029_pilon to pilon.fasta [pilon] Writing NODE_6557_length_500_cov_3.153034:1-500 changes to pilon.changes [pilon] Writing updated NODE_6557_length_500_cov_3.153034_pilon to pilon.fasta [pilon] Writing NODE_6558_length_500_cov_1.762533:1-500 changes to pilon.changes [pilon] Writing updated NODE_6558_length_500_cov_1.762533_pilon to pilon.fasta [pilon] Writing NODE_6559_length_500_cov_1.356201:1-500 changes to pilon.changes [pilon] Writing updated NODE_6559_length_500_cov_1.356201_pilon to pilon.fasta [pilon] Writing NODE_6560_length_500_cov_0.245383:1-500 changes to pilon.changes [pilon] Writing updated NODE_6560_length_500_cov_0.245383_pilon to pilon.fasta [pilon] Writing NODE_6561_length_499_cov_37.960317:1-499 changes to pilon.changes [pilon] Writing updated NODE_6561_length_499_cov_37.960317_pilon to pilon.fasta [pilon] Writing NODE_6562_length_499_cov_12.224868:1-499 changes to pilon.changes [pilon] Writing updated NODE_6562_length_499_cov_12.224868_pilon to pilon.fasta [pilon] Writing NODE_6563_length_499_cov_6.801587:1-499 changes to pilon.changes [pilon] Writing updated NODE_6563_length_499_cov_6.801587_pilon to pilon.fasta [pilon] Writing NODE_6564_length_499_cov_3.761905:1-499 changes to pilon.changes [pilon] Writing updated NODE_6564_length_499_cov_3.761905_pilon to pilon.fasta [pilon] Writing NODE_6565_length_499_cov_3.743386:1-499 changes to pilon.changes [pilon] Writing updated NODE_6565_length_499_cov_3.743386_pilon to pilon.fasta [pilon] Writing NODE_6566_length_499_cov_1.849206:1-499 changes to pilon.changes [pilon] Writing updated NODE_6566_length_499_cov_1.849206_pilon to pilon.fasta [pilon] Writing NODE_6567_length_499_cov_1.351852:1-499 changes to pilon.changes [pilon] Writing updated NODE_6567_length_499_cov_1.351852_pilon to pilon.fasta [pilon] Writing NODE_6568_length_499_cov_1.280423:1-499 changes to pilon.changes [pilon] Writing updated NODE_6568_length_499_cov_1.280423_pilon to pilon.fasta [pilon] Writing NODE_6569_length_499_cov_1.005291:1-499 changes to pilon.changes [pilon] Writing updated NODE_6569_length_499_cov_1.005291_pilon to pilon.fasta [pilon] Writing NODE_6570_length_499_cov_0.878307:1-499 changes to pilon.changes [pilon] Writing updated NODE_6570_length_499_cov_0.878307_pilon to pilon.fasta [pilon] Writing NODE_6571_length_499_cov_0.849206:1-499 changes to pilon.changes [pilon] Writing updated NODE_6571_length_499_cov_0.849206_pilon to pilon.fasta [pilon] Writing NODE_6572_length_498_cov_40.978780:1-498 changes to pilon.changes [pilon] Writing updated NODE_6572_length_498_cov_40.978780_pilon to pilon.fasta [pilon] Writing NODE_6573_length_498_cov_36.405836:1-498 changes to pilon.changes [pilon] Writing updated NODE_6573_length_498_cov_36.405836_pilon to pilon.fasta [pilon] Writing NODE_6574_length_498_cov_28.466844:1-498 changes to pilon.changes [pilon] Writing updated NODE_6574_length_498_cov_28.466844_pilon to pilon.fasta [pilon] Writing NODE_6575_length_498_cov_26.716180:1-498 changes to pilon.changes [pilon] Writing updated NODE_6575_length_498_cov_26.716180_pilon to pilon.fasta [pilon] Writing NODE_6576_length_498_cov_25.514589:1-498 changes to pilon.changes [pilon] Writing updated NODE_6576_length_498_cov_25.514589_pilon to pilon.fasta [pilon] Writing NODE_6577_length_498_cov_24.819629:1-498 changes to pilon.changes [pilon] Writing updated NODE_6577_length_498_cov_24.819629_pilon to pilon.fasta [pilon] Writing NODE_6578_length_498_cov_20.283820:1-498 changes to pilon.changes [pilon] Writing updated NODE_6578_length_498_cov_20.283820_pilon to pilon.fasta [pilon] Writing NODE_6579_length_498_cov_18.302387:1-498 changes to pilon.changes [pilon] Writing updated NODE_6579_length_498_cov_18.302387_pilon to pilon.fasta [pilon] Writing NODE_6580_length_498_cov_15.610080:1-498 changes to pilon.changes [pilon] Writing updated NODE_6580_length_498_cov_15.610080_pilon to pilon.fasta [pilon] Writing NODE_6581_length_498_cov_13.931034:1-498 changes to pilon.changes [pilon] Writing updated NODE_6581_length_498_cov_13.931034_pilon to pilon.fasta [pilon] Writing NODE_6582_length_498_cov_10.427056:1-498 changes to pilon.changes [pilon] Writing updated NODE_6582_length_498_cov_10.427056_pilon to pilon.fasta [pilon] Writing NODE_6583_length_498_cov_10.352785:1-498 changes to pilon.changes [pilon] Writing updated NODE_6583_length_498_cov_10.352785_pilon to pilon.fasta [pilon] Writing NODE_6584_length_498_cov_9.567639:1-498 changes to pilon.changes [pilon] Writing updated NODE_6584_length_498_cov_9.567639_pilon to pilon.fasta [pilon] Writing NODE_6585_length_498_cov_2.525199:1-498 changes to pilon.changes [pilon] Writing updated NODE_6585_length_498_cov_2.525199_pilon to pilon.fasta [pilon] Writing NODE_6586_length_498_cov_2.320955:1-498 changes to pilon.changes [pilon] Writing updated NODE_6586_length_498_cov_2.320955_pilon to pilon.fasta [pilon] Writing NODE_6587_length_498_cov_2.212202:1-498 changes to pilon.changes [pilon] Writing updated NODE_6587_length_498_cov_2.212202_pilon to pilon.fasta [pilon] Writing NODE_6588_length_498_cov_1.753316:1-498 changes to pilon.changes [pilon] Writing updated NODE_6588_length_498_cov_1.753316_pilon to pilon.fasta [pilon] Writing NODE_6589_length_498_cov_1.530504:1-498 changes to pilon.changes [pilon] Writing updated NODE_6589_length_498_cov_1.530504_pilon to pilon.fasta [pilon] Writing NODE_6590_length_498_cov_1.432361:1-498 changes to pilon.changes [pilon] Writing updated NODE_6590_length_498_cov_1.432361_pilon to pilon.fasta [pilon] Writing NODE_6591_length_498_cov_1.198939:1-498 changes to pilon.changes [pilon] Writing updated NODE_6591_length_498_cov_1.198939_pilon to pilon.fasta [pilon] Writing NODE_6592_length_498_cov_0.978780:1-498 changes to pilon.changes [pilon] Writing updated NODE_6592_length_498_cov_0.978780_pilon to pilon.fasta [pilon] Writing NODE_6593_length_498_cov_0.517241:1-498 changes to pilon.changes [pilon] Writing updated NODE_6593_length_498_cov_0.517241_pilon to pilon.fasta [pilon] Writing NODE_6594_length_498_cov_0.424403:1-498 changes to pilon.changes [pilon] Writing updated NODE_6594_length_498_cov_0.424403_pilon to pilon.fasta [pilon] Writing NODE_6595_length_497_cov_45.566489:1-497 changes to pilon.changes [pilon] Writing updated NODE_6595_length_497_cov_45.566489_pilon to pilon.fasta [pilon] Writing NODE_6596_length_497_cov_44.071809:1-497 changes to pilon.changes [pilon] Writing updated NODE_6596_length_497_cov_44.071809_pilon to pilon.fasta [pilon] Writing NODE_6597_length_497_cov_43.465426:1-497 changes to pilon.changes [pilon] Writing updated NODE_6597_length_497_cov_43.465426_pilon to pilon.fasta [pilon] Writing NODE_6598_length_497_cov_38.513298:1-497 changes to pilon.changes [pilon] Writing updated NODE_6598_length_497_cov_38.513298_pilon to pilon.fasta [pilon] Writing NODE_6599_length_497_cov_31.859043:1-497 changes to pilon.changes [pilon] Writing updated NODE_6599_length_497_cov_31.859043_pilon to pilon.fasta [pilon] Writing NODE_6600_length_497_cov_24.401596:1-497 changes to pilon.changes [pilon] Writing updated NODE_6600_length_497_cov_24.401596_pilon to pilon.fasta [pilon] Writing NODE_6601_length_497_cov_23.829787:1-497 changes to pilon.changes [pilon] Writing updated NODE_6601_length_497_cov_23.829787_pilon to pilon.fasta [pilon] Writing NODE_6602_length_497_cov_19.172872:1-497 changes to pilon.changes [pilon] Writing updated NODE_6602_length_497_cov_19.172872_pilon to pilon.fasta [pilon] Writing NODE_6603_length_497_cov_14.582447:1-497 changes to pilon.changes [pilon] Writing updated NODE_6603_length_497_cov_14.582447_pilon to pilon.fasta [pilon] Writing NODE_6604_length_497_cov_4.768617:1-497 changes to pilon.changes [pilon] Writing updated NODE_6604_length_497_cov_4.768617_pilon to pilon.fasta [pilon] Writing NODE_6605_length_497_cov_4.313830:1-497 changes to pilon.changes [pilon] Writing updated NODE_6605_length_497_cov_4.313830_pilon to pilon.fasta [pilon] Writing NODE_6606_length_497_cov_3.188830:1-497 changes to pilon.changes [pilon] Writing updated NODE_6606_length_497_cov_3.188830_pilon to pilon.fasta [pilon] Writing NODE_6607_length_497_cov_2.760638:1-497 changes to pilon.changes [pilon] Writing updated NODE_6607_length_497_cov_2.760638_pilon to pilon.fasta [pilon] Writing NODE_6608_length_497_cov_1.888298:1-497 changes to pilon.changes [pilon] Writing updated NODE_6608_length_497_cov_1.888298_pilon to pilon.fasta [pilon] Writing NODE_6609_length_497_cov_1.593085:1-497 changes to pilon.changes [pilon] Writing updated NODE_6609_length_497_cov_1.593085_pilon to pilon.fasta [pilon] Writing NODE_6610_length_497_cov_1.539894:1-497 changes to pilon.changes [pilon] Writing updated NODE_6610_length_497_cov_1.539894_pilon to pilon.fasta [pilon] Writing NODE_6611_length_496_cov_44.538667:1-496 changes to pilon.changes [pilon] Writing updated NODE_6611_length_496_cov_44.538667_pilon to pilon.fasta [pilon] Writing NODE_6612_length_496_cov_34.154667:1-496 changes to pilon.changes [pilon] Writing updated NODE_6612_length_496_cov_34.154667_pilon to pilon.fasta [pilon] Writing NODE_6613_length_496_cov_32.168000:1-496 changes to pilon.changes [pilon] Writing updated NODE_6613_length_496_cov_32.168000_pilon to pilon.fasta [pilon] Writing NODE_6614_length_496_cov_31.042667:1-496 changes to pilon.changes [pilon] Writing updated NODE_6614_length_496_cov_31.042667_pilon to pilon.fasta [pilon] Writing NODE_6615_length_496_cov_29.037333:1-496 changes to pilon.changes [pilon] Writing updated NODE_6615_length_496_cov_29.037333_pilon to pilon.fasta [pilon] Writing NODE_6616_length_496_cov_28.882667:1-496 changes to pilon.changes [pilon] Writing updated NODE_6616_length_496_cov_28.882667_pilon to pilon.fasta [pilon] Writing NODE_6617_length_496_cov_8.554667:1-496 changes to pilon.changes [pilon] Writing updated NODE_6617_length_496_cov_8.554667_pilon to pilon.fasta [pilon] Writing NODE_6618_length_496_cov_3.168000:1-496 changes to pilon.changes [pilon] Writing updated NODE_6618_length_496_cov_3.168000_pilon to pilon.fasta [pilon] Writing NODE_6619_length_496_cov_1.752000:1-496 changes to pilon.changes [pilon] Writing updated NODE_6619_length_496_cov_1.752000_pilon to pilon.fasta [pilon] Writing NODE_6620_length_496_cov_1.194667:1-496 changes to pilon.changes [pilon] Writing updated NODE_6620_length_496_cov_1.194667_pilon to pilon.fasta [pilon] Writing NODE_6621_length_495_cov_56.377005:1-495 changes to pilon.changes [pilon] Writing updated NODE_6621_length_495_cov_56.377005_pilon to pilon.fasta [pilon] Writing NODE_6622_length_495_cov_54.545455:1-495 changes to pilon.changes [pilon] Writing updated NODE_6622_length_495_cov_54.545455_pilon to pilon.fasta [pilon] Writing NODE_6623_length_495_cov_41.965241:1-495 changes to pilon.changes [pilon] Writing updated NODE_6623_length_495_cov_41.965241_pilon to pilon.fasta [pilon] Writing NODE_6624_length_495_cov_40.759358:1-495 changes to pilon.changes [pilon] Writing updated NODE_6624_length_495_cov_40.759358_pilon to pilon.fasta [pilon] Writing NODE_6625_length_495_cov_33.379679:1-495 changes to pilon.changes [pilon] Writing updated NODE_6625_length_495_cov_33.379679_pilon to pilon.fasta [pilon] Writing NODE_6626_length_495_cov_24.604278:1-495 changes to pilon.changes [pilon] Writing updated NODE_6626_length_495_cov_24.604278_pilon to pilon.fasta [pilon] Writing NODE_6627_length_495_cov_18.946524:1-495 changes to pilon.changes [pilon] Writing updated NODE_6627_length_495_cov_18.946524_pilon to pilon.fasta [pilon] Writing NODE_6628_length_495_cov_17.844920:1-495 changes to pilon.changes [pilon] Writing updated NODE_6628_length_495_cov_17.844920_pilon to pilon.fasta [pilon] Writing NODE_6629_length_495_cov_16.802139:1-495 changes to pilon.changes [pilon] Writing updated NODE_6629_length_495_cov_16.802139_pilon to pilon.fasta [pilon] Writing NODE_6630_length_495_cov_16.098930:1-495 changes to pilon.changes [pilon] Writing updated NODE_6630_length_495_cov_16.098930_pilon to pilon.fasta [pilon] Writing NODE_6631_length_495_cov_15.946524:1-495 changes to pilon.changes [pilon] Writing updated NODE_6631_length_495_cov_15.946524_pilon to pilon.fasta [pilon] Writing NODE_6632_length_495_cov_14.088235:1-495 changes to pilon.changes [pilon] Writing updated NODE_6632_length_495_cov_14.088235_pilon to pilon.fasta [pilon] Writing NODE_6633_length_495_cov_13.556150:1-495 changes to pilon.changes [pilon] Writing updated NODE_6633_length_495_cov_13.556150_pilon to pilon.fasta [pilon] Writing NODE_6634_length_495_cov_3.208556:1-495 changes to pilon.changes [pilon] Writing updated NODE_6634_length_495_cov_3.208556_pilon to pilon.fasta [pilon] Writing NODE_6635_length_495_cov_2.663102:1-495 changes to pilon.changes [pilon] Writing updated NODE_6635_length_495_cov_2.663102_pilon to pilon.fasta [pilon] Writing NODE_6636_length_495_cov_1.810160:1-495 changes to pilon.changes [pilon] Writing updated NODE_6636_length_495_cov_1.810160_pilon to pilon.fasta [pilon] Writing NODE_6637_length_495_cov_1.783422:1-495 changes to pilon.changes [pilon] Writing updated NODE_6637_length_495_cov_1.783422_pilon to pilon.fasta [pilon] Writing NODE_6638_length_495_cov_1.778075:1-495 changes to pilon.changes [pilon] Writing updated NODE_6638_length_495_cov_1.778075_pilon to pilon.fasta [pilon] Writing NODE_6639_length_495_cov_1.778075:1-495 changes to pilon.changes [pilon] Writing updated NODE_6639_length_495_cov_1.778075_pilon to pilon.fasta [pilon] Writing NODE_6640_length_495_cov_1.663102:1-495 changes to pilon.changes [pilon] Writing updated NODE_6640_length_495_cov_1.663102_pilon to pilon.fasta [pilon] Writing NODE_6641_length_495_cov_1.160428:1-495 changes to pilon.changes [pilon] Writing updated NODE_6641_length_495_cov_1.160428_pilon to pilon.fasta [pilon] Writing NODE_6642_length_495_cov_0.598930:1-495 changes to pilon.changes [pilon] Writing updated NODE_6642_length_495_cov_0.598930_pilon to pilon.fasta [pilon] Writing NODE_6643_length_494_cov_65.493298:1-494 changes to pilon.changes [pilon] Writing updated NODE_6643_length_494_cov_65.493298_pilon to pilon.fasta [pilon] Writing NODE_6644_length_494_cov_32.541555:1-494 changes to pilon.changes [pilon] Writing updated NODE_6644_length_494_cov_32.541555_pilon to pilon.fasta [pilon] Writing NODE_6645_length_494_cov_27.278820:1-494 changes to pilon.changes [pilon] Writing updated NODE_6645_length_494_cov_27.278820_pilon to pilon.fasta [pilon] Writing NODE_6646_length_494_cov_25.064343:1-494 changes to pilon.changes [pilon] Writing updated NODE_6646_length_494_cov_25.064343_pilon to pilon.fasta [pilon] Writing NODE_6647_length_494_cov_24.018767:1-494 changes to pilon.changes [pilon] Writing updated NODE_6647_length_494_cov_24.018767_pilon to pilon.fasta [pilon] Writing NODE_6648_length_494_cov_21.967828:1-494 changes to pilon.changes [pilon] Writing updated NODE_6648_length_494_cov_21.967828_pilon to pilon.fasta [pilon] Writing NODE_6649_length_494_cov_14.152815:1-494 changes to pilon.changes [pilon] Writing updated NODE_6649_length_494_cov_14.152815_pilon to pilon.fasta [pilon] Writing NODE_6650_length_494_cov_1.040214:1-494 changes to pilon.changes [pilon] Writing updated NODE_6650_length_494_cov_1.040214_pilon to pilon.fasta [pilon] Writing NODE_6651_length_493_cov_42.975806:1-493 changes to pilon.changes [pilon] Writing updated NODE_6651_length_493_cov_42.975806_pilon to pilon.fasta [pilon] Writing NODE_6652_length_493_cov_35.516129:1-493 changes to pilon.changes [pilon] Writing updated NODE_6652_length_493_cov_35.516129_pilon to pilon.fasta [pilon] Writing NODE_6653_length_493_cov_28.908602:1-493 changes to pilon.changes [pilon] Writing updated NODE_6653_length_493_cov_28.908602_pilon to pilon.fasta [pilon] Writing NODE_6654_length_493_cov_28.508065:1-493 changes to pilon.changes [pilon] Writing updated NODE_6654_length_493_cov_28.508065_pilon to pilon.fasta [pilon] Writing NODE_6655_length_493_cov_18.827957:1-493 changes to pilon.changes [pilon] Writing updated NODE_6655_length_493_cov_18.827957_pilon to pilon.fasta [pilon] Writing NODE_6656_length_493_cov_13.642473:1-493 changes to pilon.changes [pilon] Writing updated NODE_6656_length_493_cov_13.642473_pilon to pilon.fasta [pilon] Writing NODE_6657_length_493_cov_12.548387:1-493 changes to pilon.changes [pilon] Writing updated NODE_6657_length_493_cov_12.548387_pilon to pilon.fasta [pilon] Writing NODE_6658_length_493_cov_11.094086:1-493 changes to pilon.changes [pilon] Writing updated NODE_6658_length_493_cov_11.094086_pilon to pilon.fasta [pilon] Writing NODE_6659_length_493_cov_9.215054:1-493 changes to pilon.changes [pilon] Writing updated NODE_6659_length_493_cov_9.215054_pilon to pilon.fasta [pilon] Writing NODE_6660_length_493_cov_5.120968:1-493 changes to pilon.changes [pilon] Writing updated NODE_6660_length_493_cov_5.120968_pilon to pilon.fasta [pilon] Writing NODE_6661_length_493_cov_1.344086:1-493 changes to pilon.changes [pilon] Writing updated NODE_6661_length_493_cov_1.344086_pilon to pilon.fasta [pilon] Writing NODE_6662_length_493_cov_1.290323:1-493 changes to pilon.changes [pilon] Writing updated NODE_6662_length_493_cov_1.290323_pilon to pilon.fasta [pilon] Writing NODE_6663_length_493_cov_0.970430:1-493 changes to pilon.changes [pilon] Writing updated NODE_6663_length_493_cov_0.970430_pilon to pilon.fasta [pilon] Writing NODE_6664_length_493_cov_0.873656:1-493 changes to pilon.changes [pilon] Writing updated NODE_6664_length_493_cov_0.873656_pilon to pilon.fasta [pilon] Writing NODE_6665_length_492_cov_49.789757:1-492 changes to pilon.changes [pilon] Writing updated NODE_6665_length_492_cov_49.789757_pilon to pilon.fasta [pilon] Writing NODE_6666_length_492_cov_28.431267:1-492 changes to pilon.changes [pilon] Writing updated NODE_6666_length_492_cov_28.431267_pilon to pilon.fasta [pilon] Writing NODE_6667_length_492_cov_26.433962:1-492 changes to pilon.changes [pilon] Writing updated NODE_6667_length_492_cov_26.433962_pilon to pilon.fasta [pilon] Writing NODE_6668_length_492_cov_24.649596:1-492 changes to pilon.changes [pilon] Writing updated NODE_6668_length_492_cov_24.649596_pilon to pilon.fasta [pilon] Writing NODE_6669_length_492_cov_24.258760:1-492 changes to pilon.changes [pilon] Writing updated NODE_6669_length_492_cov_24.258760_pilon to pilon.fasta [pilon] Writing NODE_6670_length_492_cov_23.207547:1-492 changes to pilon.changes [pilon] Writing updated NODE_6670_length_492_cov_23.207547_pilon to pilon.fasta [pilon] Writing NODE_6671_length_492_cov_22.840970:1-492 changes to pilon.changes [pilon] Writing updated NODE_6671_length_492_cov_22.840970_pilon to pilon.fasta [pilon] Writing NODE_6672_length_492_cov_21.951482:1-492 changes to pilon.changes [pilon] Writing updated NODE_6672_length_492_cov_21.951482_pilon to pilon.fasta [pilon] Writing NODE_6673_length_492_cov_18.601078:1-492 changes to pilon.changes [pilon] Writing updated NODE_6673_length_492_cov_18.601078_pilon to pilon.fasta [pilon] Writing NODE_6674_length_492_cov_17.444744:1-492 changes to pilon.changes [pilon] Writing updated NODE_6674_length_492_cov_17.444744_pilon to pilon.fasta [pilon] Writing NODE_6675_length_492_cov_17.396226:1-492 changes to pilon.changes [pilon] Writing updated NODE_6675_length_492_cov_17.396226_pilon to pilon.fasta [pilon] Writing NODE_6676_length_492_cov_16.336927:1-492 changes to pilon.changes [pilon] Writing updated NODE_6676_length_492_cov_16.336927_pilon to pilon.fasta [pilon] Writing NODE_6677_length_492_cov_16.013477:1-492 changes to pilon.changes [pilon] Writing updated NODE_6677_length_492_cov_16.013477_pilon to pilon.fasta [pilon] Writing NODE_6678_length_492_cov_15.681941:1-492 changes to pilon.changes [pilon] Writing updated NODE_6678_length_492_cov_15.681941_pilon to pilon.fasta [pilon] Writing NODE_6679_length_492_cov_15.563342:1-492 changes to pilon.changes [pilon] Writing updated NODE_6679_length_492_cov_15.563342_pilon to pilon.fasta [pilon] Writing NODE_6680_length_492_cov_13.078167:1-492 changes to pilon.changes [pilon] Writing updated NODE_6680_length_492_cov_13.078167_pilon to pilon.fasta [pilon] Writing NODE_6681_length_492_cov_9.274933:1-492 changes to pilon.changes [pilon] Writing updated NODE_6681_length_492_cov_9.274933_pilon to pilon.fasta [pilon] Writing NODE_6682_length_492_cov_8.964960:1-492 changes to pilon.changes [pilon] Writing updated NODE_6682_length_492_cov_8.964960_pilon to pilon.fasta [pilon] Writing NODE_6683_length_492_cov_8.854447:1-492 changes to pilon.changes [pilon] Writing updated NODE_6683_length_492_cov_8.854447_pilon to pilon.fasta [pilon] Writing NODE_6684_length_492_cov_2.097035:1-492 changes to pilon.changes [pilon] Writing updated NODE_6684_length_492_cov_2.097035_pilon to pilon.fasta [pilon] Writing NODE_6685_length_491_cov_22.043243:1-491 changes to pilon.changes [pilon] Writing updated NODE_6685_length_491_cov_22.043243_pilon to pilon.fasta [pilon] Writing NODE_6686_length_491_cov_18.843243:1-491 changes to pilon.changes [pilon] Writing updated NODE_6686_length_491_cov_18.843243_pilon to pilon.fasta [pilon] Writing NODE_6687_length_491_cov_18.562162:1-491 changes to pilon.changes [pilon] Writing updated NODE_6687_length_491_cov_18.562162_pilon to pilon.fasta [pilon] Writing NODE_6688_length_491_cov_18.443243:1-491 changes to pilon.changes [pilon] Writing updated NODE_6688_length_491_cov_18.443243_pilon to pilon.fasta [pilon] Writing NODE_6689_length_491_cov_17.886486:1-491 changes to pilon.changes [pilon] Writing updated NODE_6689_length_491_cov_17.886486_pilon to pilon.fasta [pilon] Writing NODE_6690_length_491_cov_13.159459:1-491 changes to pilon.changes [pilon] Writing updated NODE_6690_length_491_cov_13.159459_pilon to pilon.fasta [pilon] Writing NODE_6691_length_491_cov_9.981081:1-491 changes to pilon.changes [pilon] Writing updated NODE_6691_length_491_cov_9.981081_pilon to pilon.fasta [pilon] Writing NODE_6692_length_491_cov_8.408108:1-491 changes to pilon.changes [pilon] Writing updated NODE_6692_length_491_cov_8.408108_pilon to pilon.fasta [pilon] Writing NODE_6693_length_491_cov_1.897297:1-491 changes to pilon.changes [pilon] Writing updated NODE_6693_length_491_cov_1.897297_pilon to pilon.fasta [pilon] Writing NODE_6694_length_491_cov_0.545946:1-491 changes to pilon.changes [pilon] Writing updated NODE_6694_length_491_cov_0.545946_pilon to pilon.fasta [pilon] Writing NODE_6695_length_490_cov_60.162602:1-490 changes to pilon.changes [pilon] Writing updated NODE_6695_length_490_cov_60.162602_pilon to pilon.fasta [pilon] Writing NODE_6696_length_490_cov_52.644986:1-490 changes to pilon.changes [pilon] Writing updated NODE_6696_length_490_cov_52.644986_pilon to pilon.fasta [pilon] Writing NODE_6697_length_490_cov_25.295393:1-490 changes to pilon.changes [pilon] Writing updated NODE_6697_length_490_cov_25.295393_pilon to pilon.fasta [pilon] Writing NODE_6698_length_490_cov_24.899729:1-490 changes to pilon.changes [pilon] Writing updated NODE_6698_length_490_cov_24.899729_pilon to pilon.fasta [pilon] Writing NODE_6699_length_490_cov_19.972900:1-490 changes to pilon.changes [pilon] Writing updated NODE_6699_length_490_cov_19.972900_pilon to pilon.fasta [pilon] Writing NODE_6700_length_490_cov_15.918699:1-490 changes to pilon.changes [pilon] Writing updated NODE_6700_length_490_cov_15.918699_pilon to pilon.fasta [pilon] Writing NODE_6701_length_490_cov_11.875339:1-490 changes to pilon.changes [pilon] Writing updated NODE_6701_length_490_cov_11.875339_pilon to pilon.fasta [pilon] Writing NODE_6702_length_490_cov_11.571816:1-490 changes to pilon.changes [pilon] Writing updated NODE_6702_length_490_cov_11.571816_pilon to pilon.fasta [pilon] Writing NODE_6703_length_490_cov_10.243902:1-490 changes to pilon.changes [pilon] Writing updated NODE_6703_length_490_cov_10.243902_pilon to pilon.fasta [pilon] Writing NODE_6704_length_490_cov_9.151762:1-490 changes to pilon.changes [pilon] Writing updated NODE_6704_length_490_cov_9.151762_pilon to pilon.fasta [pilon] Writing NODE_6705_length_490_cov_2.915989:1-490 changes to pilon.changes [pilon] Writing updated NODE_6705_length_490_cov_2.915989_pilon to pilon.fasta [pilon] Writing NODE_6706_length_490_cov_2.151762:1-490 changes to pilon.changes [pilon] Writing updated NODE_6706_length_490_cov_2.151762_pilon to pilon.fasta [pilon] Writing NODE_6707_length_489_cov_63.472826:1-489 changes to pilon.changes [pilon] Writing updated NODE_6707_length_489_cov_63.472826_pilon to pilon.fasta [pilon] Writing NODE_6708_length_489_cov_45.483696:1-489 changes to pilon.changes [pilon] Writing updated NODE_6708_length_489_cov_45.483696_pilon to pilon.fasta [pilon] Writing NODE_6709_length_489_cov_38.258152:1-489 changes to pilon.changes [pilon] Writing updated NODE_6709_length_489_cov_38.258152_pilon to pilon.fasta [pilon] Writing NODE_6710_length_489_cov_37.475543:1-489 changes to pilon.changes [pilon] Writing updated NODE_6710_length_489_cov_37.475543_pilon to pilon.fasta [pilon] Writing NODE_6711_length_489_cov_30.119565:1-489 changes to pilon.changes [pilon] Writing updated NODE_6711_length_489_cov_30.119565_pilon to pilon.fasta [pilon] Writing NODE_6712_length_489_cov_28.489130:1-489 changes to pilon.changes [pilon] Writing updated NODE_6712_length_489_cov_28.489130_pilon to pilon.fasta [pilon] Writing NODE_6713_length_489_cov_22.597826:1-489 changes to pilon.changes [pilon] Writing updated NODE_6713_length_489_cov_22.597826_pilon to pilon.fasta [pilon] Writing NODE_6714_length_489_cov_19.448370:1-489 changes to pilon.changes [pilon] Writing updated NODE_6714_length_489_cov_19.448370_pilon to pilon.fasta [pilon] Writing NODE_6715_length_489_cov_19.198370:1-489 changes to pilon.changes [pilon] Writing updated NODE_6715_length_489_cov_19.198370_pilon to pilon.fasta [pilon] Writing NODE_6716_length_489_cov_18.652174:1-489 changes to pilon.changes [pilon] Writing updated NODE_6716_length_489_cov_18.652174_pilon to pilon.fasta [pilon] Writing NODE_6717_length_489_cov_17.116848:1-489 changes to pilon.changes [pilon] Writing updated NODE_6717_length_489_cov_17.116848_pilon to pilon.fasta [pilon] Writing NODE_6718_length_489_cov_12.706522:1-489 changes to pilon.changes [pilon] Writing updated NODE_6718_length_489_cov_12.706522_pilon to pilon.fasta [pilon] Writing NODE_6719_length_489_cov_11.809783:1-489 changes to pilon.changes [pilon] Writing updated NODE_6719_length_489_cov_11.809783_pilon to pilon.fasta [pilon] Writing NODE_6720_length_489_cov_10.967391:1-489 changes to pilon.changes [pilon] Writing updated NODE_6720_length_489_cov_10.967391_pilon to pilon.fasta [pilon] Writing NODE_6721_length_489_cov_4.100543:1-489 changes to pilon.changes [pilon] Writing updated NODE_6721_length_489_cov_4.100543_pilon to pilon.fasta [pilon] Writing NODE_6722_length_489_cov_2.760870:1-489 changes to pilon.changes [pilon] Writing updated NODE_6722_length_489_cov_2.760870_pilon to pilon.fasta [pilon] Writing NODE_6723_length_489_cov_1.540761:1-489 changes to pilon.changes [pilon] Writing updated NODE_6723_length_489_cov_1.540761_pilon to pilon.fasta [pilon] Writing NODE_6724_length_489_cov_1.423913:1-489 changes to pilon.changes [pilon] Writing updated NODE_6724_length_489_cov_1.423913_pilon to pilon.fasta [pilon] Writing NODE_6725_length_489_cov_1.293478:1-489 changes to pilon.changes [pilon] Writing updated NODE_6725_length_489_cov_1.293478_pilon to pilon.fasta [pilon] Writing NODE_6726_length_489_cov_1.157609:1-489 changes to pilon.changes [pilon] Writing updated NODE_6726_length_489_cov_1.157609_pilon to pilon.fasta [pilon] Writing NODE_6727_length_489_cov_1.114130:1-489 changes to pilon.changes [pilon] Writing updated NODE_6727_length_489_cov_1.114130_pilon to pilon.fasta [pilon] Writing NODE_6728_length_489_cov_1.029891:1-489 changes to pilon.changes [pilon] Writing updated NODE_6728_length_489_cov_1.029891_pilon to pilon.fasta [pilon] Writing NODE_6729_length_489_cov_0.869565:1-489 changes to pilon.changes [pilon] Writing updated NODE_6729_length_489_cov_0.869565_pilon to pilon.fasta [pilon] Writing NODE_6730_length_488_cov_35.062670:1-488 changes to pilon.changes [pilon] Writing updated NODE_6730_length_488_cov_35.062670_pilon to pilon.fasta [pilon] Writing NODE_6731_length_488_cov_12.678474:1-488 changes to pilon.changes [pilon] Writing updated NODE_6731_length_488_cov_12.678474_pilon to pilon.fasta [pilon] Writing NODE_6732_length_488_cov_9.841962:1-488 changes to pilon.changes [pilon] Writing updated NODE_6732_length_488_cov_9.841962_pilon to pilon.fasta [pilon] Writing NODE_6733_length_488_cov_1.702997:1-488 changes to pilon.changes [pilon] Writing updated NODE_6733_length_488_cov_1.702997_pilon to pilon.fasta [pilon] Writing NODE_6734_length_488_cov_1.648501:1-488 changes to pilon.changes [pilon] Writing updated NODE_6734_length_488_cov_1.648501_pilon to pilon.fasta [pilon] Writing NODE_6735_length_488_cov_1.166213:1-488 changes to pilon.changes [pilon] Writing updated NODE_6735_length_488_cov_1.166213_pilon to pilon.fasta [pilon] Writing NODE_6736_length_488_cov_0.828338:1-488 changes to pilon.changes [pilon] Writing updated NODE_6736_length_488_cov_0.828338_pilon to pilon.fasta [pilon] Writing NODE_6737_length_487_cov_55.163934:1-487 changes to pilon.changes [pilon] Writing updated NODE_6737_length_487_cov_55.163934_pilon to pilon.fasta [pilon] Writing NODE_6738_length_487_cov_49.997268:1-487 changes to pilon.changes [pilon] Writing updated NODE_6738_length_487_cov_49.997268_pilon to pilon.fasta [pilon] Writing NODE_6739_length_487_cov_48.390710:1-487 changes to pilon.changes [pilon] Writing updated NODE_6739_length_487_cov_48.390710_pilon to pilon.fasta [pilon] Writing NODE_6740_length_487_cov_28.051913:1-487 changes to pilon.changes [pilon] Writing updated NODE_6740_length_487_cov_28.051913_pilon to pilon.fasta [pilon] Writing NODE_6741_length_487_cov_26.046448:1-487 changes to pilon.changes [pilon] Writing updated NODE_6741_length_487_cov_26.046448_pilon to pilon.fasta [pilon] Writing NODE_6742_length_487_cov_3.560109:1-487 changes to pilon.changes [pilon] Writing updated NODE_6742_length_487_cov_3.560109_pilon to pilon.fasta [pilon] Writing NODE_6743_length_487_cov_3.158470:1-487 changes to pilon.changes [pilon] Writing updated NODE_6743_length_487_cov_3.158470_pilon to pilon.fasta [pilon] Writing NODE_6744_length_487_cov_0.931694:1-487 changes to pilon.changes [pilon] Writing updated NODE_6744_length_487_cov_0.931694_pilon to pilon.fasta [pilon] Writing NODE_6745_length_487_cov_0.863388:1-487 changes to pilon.changes [pilon] Writing updated NODE_6745_length_487_cov_0.863388_pilon to pilon.fasta [pilon] Writing NODE_6746_length_486_cov_40.328767:1-486 changes to pilon.changes [pilon] Writing updated NODE_6746_length_486_cov_40.328767_pilon to pilon.fasta [pilon] Writing NODE_6747_length_486_cov_36.989041:1-486 changes to pilon.changes [pilon] Writing updated NODE_6747_length_486_cov_36.989041_pilon to pilon.fasta [pilon] Writing NODE_6748_length_486_cov_35.950685:1-486 changes to pilon.changes [pilon] Writing updated NODE_6748_length_486_cov_35.950685_pilon to pilon.fasta [pilon] Writing NODE_6749_length_486_cov_24.082192:1-486 changes to pilon.changes [pilon] Writing updated NODE_6749_length_486_cov_24.082192_pilon to pilon.fasta [pilon] Writing NODE_6750_length_486_cov_21.923288:1-486 changes to pilon.changes [pilon] Writing updated NODE_6750_length_486_cov_21.923288_pilon to pilon.fasta [pilon] Writing NODE_6751_length_486_cov_21.704110:1-486 changes to pilon.changes [pilon] Writing updated NODE_6751_length_486_cov_21.704110_pilon to pilon.fasta [pilon] Writing NODE_6752_length_486_cov_19.742466:1-486 changes to pilon.changes [pilon] Writing updated NODE_6752_length_486_cov_19.742466_pilon to pilon.fasta [pilon] Writing NODE_6753_length_486_cov_18.539726:1-486 changes to pilon.changes [pilon] Writing updated NODE_6753_length_486_cov_18.539726_pilon to pilon.fasta [pilon] Writing NODE_6754_length_486_cov_16.832877:1-486 changes to pilon.changes [pilon] Writing updated NODE_6754_length_486_cov_16.832877_pilon to pilon.fasta [pilon] Writing NODE_6755_length_486_cov_10.797260:1-486 changes to pilon.changes [pilon] Writing updated NODE_6755_length_486_cov_10.797260_pilon to pilon.fasta [pilon] Writing NODE_6756_length_486_cov_9.868493:1-486 changes to pilon.changes [pilon] Writing updated NODE_6756_length_486_cov_9.868493_pilon to pilon.fasta [pilon] Writing NODE_6757_length_486_cov_2.002740:1-486 changes to pilon.changes [pilon] Writing updated NODE_6757_length_486_cov_2.002740_pilon to pilon.fasta [pilon] Writing NODE_6758_length_486_cov_1.479452:1-486 changes to pilon.changes [pilon] Writing updated NODE_6758_length_486_cov_1.479452_pilon to pilon.fasta [pilon] Writing NODE_6759_length_486_cov_0.819178:1-486 changes to pilon.changes [pilon] Writing updated NODE_6759_length_486_cov_0.819178_pilon to pilon.fasta [pilon] Writing NODE_6760_length_486_cov_0.553425:1-486 changes to pilon.changes [pilon] Writing updated NODE_6760_length_486_cov_0.553425_pilon to pilon.fasta [pilon] Writing NODE_6761_length_485_cov_39.755495:1-485 changes to pilon.changes [pilon] Writing updated NODE_6761_length_485_cov_39.755495_pilon to pilon.fasta [pilon] Writing NODE_6762_length_485_cov_33.357143:1-485 changes to pilon.changes [pilon] Writing updated NODE_6762_length_485_cov_33.357143_pilon to pilon.fasta [pilon] Writing NODE_6763_length_485_cov_32.329670:1-485 changes to pilon.changes [pilon] Writing updated NODE_6763_length_485_cov_32.329670_pilon to pilon.fasta [pilon] Writing NODE_6764_length_485_cov_26.343407:1-485 changes to pilon.changes [pilon] Writing updated NODE_6764_length_485_cov_26.343407_pilon to pilon.fasta [pilon] Writing NODE_6765_length_485_cov_21.804945:1-485 changes to pilon.changes [pilon] Writing updated NODE_6765_length_485_cov_21.804945_pilon to pilon.fasta [pilon] Writing NODE_6766_length_485_cov_16.175824:1-485 changes to pilon.changes [pilon] Writing updated NODE_6766_length_485_cov_16.175824_pilon to pilon.fasta [pilon] Writing NODE_6767_length_485_cov_12.807692:1-485 changes to pilon.changes [pilon] Writing updated NODE_6767_length_485_cov_12.807692_pilon to pilon.fasta [pilon] Writing NODE_6768_length_485_cov_12.343407:1-485 changes to pilon.changes [pilon] Writing updated NODE_6768_length_485_cov_12.343407_pilon to pilon.fasta [pilon] Writing NODE_6769_length_485_cov_9.873626:1-485 changes to pilon.changes [pilon] Writing updated NODE_6769_length_485_cov_9.873626_pilon to pilon.fasta [pilon] Writing NODE_6770_length_485_cov_8.357143:1-485 changes to pilon.changes [pilon] Writing updated NODE_6770_length_485_cov_8.357143_pilon to pilon.fasta [pilon] Writing NODE_6771_length_485_cov_3.016484:1-485 changes to pilon.changes [pilon] Writing updated NODE_6771_length_485_cov_3.016484_pilon to pilon.fasta [pilon] Writing NODE_6772_length_485_cov_2.527473:1-485 changes to pilon.changes [pilon] Writing updated NODE_6772_length_485_cov_2.527473_pilon to pilon.fasta [pilon] Writing NODE_6773_length_485_cov_1.854396:1-485 changes to pilon.changes [pilon] Writing updated NODE_6773_length_485_cov_1.854396_pilon to pilon.fasta [pilon] Writing NODE_6774_length_485_cov_1.706044:1-485 changes to pilon.changes [pilon] Writing updated NODE_6774_length_485_cov_1.706044_pilon to pilon.fasta [pilon] Writing NODE_6775_length_485_cov_1.082418:1-485 changes to pilon.changes [pilon] Writing updated NODE_6775_length_485_cov_1.082418_pilon to pilon.fasta [pilon] Writing NODE_6776_length_485_cov_0.846154:1-485 changes to pilon.changes [pilon] Writing updated NODE_6776_length_485_cov_0.846154_pilon to pilon.fasta [pilon] Writing NODE_6777_length_485_cov_0.826923:1-485 changes to pilon.changes [pilon] Writing updated NODE_6777_length_485_cov_0.826923_pilon to pilon.fasta [pilon] Writing NODE_6778_length_485_cov_0.637363:1-485 changes to pilon.changes [pilon] Writing updated NODE_6778_length_485_cov_0.637363_pilon to pilon.fasta [pilon] Writing NODE_6779_length_484_cov_51.749311:1-484 changes to pilon.changes [pilon] Writing updated NODE_6779_length_484_cov_51.749311_pilon to pilon.fasta [pilon] Writing NODE_6780_length_484_cov_17.261708:1-484 changes to pilon.changes [pilon] Writing updated NODE_6780_length_484_cov_17.261708_pilon to pilon.fasta [pilon] Writing NODE_6781_length_484_cov_15.451791:1-484 changes to pilon.changes [pilon] Writing updated NODE_6781_length_484_cov_15.451791_pilon to pilon.fasta [pilon] Writing NODE_6782_length_484_cov_15.449036:1-484 changes to pilon.changes [pilon] Writing updated NODE_6782_length_484_cov_15.449036_pilon to pilon.fasta [pilon] Writing NODE_6783_length_484_cov_14.107438:1-484 changes to pilon.changes [pilon] Writing updated NODE_6783_length_484_cov_14.107438_pilon to pilon.fasta [pilon] Writing NODE_6784_length_484_cov_2.903581:1-484 changes to pilon.changes [pilon] Writing updated NODE_6784_length_484_cov_2.903581_pilon to pilon.fasta [pilon] Writing NODE_6785_length_484_cov_2.523416:1-484 changes to pilon.changes [pilon] Writing updated NODE_6785_length_484_cov_2.523416_pilon to pilon.fasta [pilon] Writing NODE_6786_length_484_cov_1.209366:1-484 changes to pilon.changes [pilon] Writing updated NODE_6786_length_484_cov_1.209366_pilon to pilon.fasta [pilon] Writing NODE_6787_length_484_cov_1.055096:1-484 changes to pilon.changes [pilon] Writing updated NODE_6787_length_484_cov_1.055096_pilon to pilon.fasta [pilon] Writing NODE_6788_length_484_cov_0.754821:1-484 changes to pilon.changes [pilon] Writing updated NODE_6788_length_484_cov_0.754821_pilon to pilon.fasta [pilon] Writing NODE_6789_length_484_cov_0.699725:1-484 changes to pilon.changes [pilon] Writing updated NODE_6789_length_484_cov_0.699725_pilon to pilon.fasta [pilon] Writing NODE_6790_length_484_cov_0.655647:1-484 changes to pilon.changes [pilon] Writing updated NODE_6790_length_484_cov_0.655647_pilon to pilon.fasta [pilon] Writing NODE_6791_length_483_cov_58.312155:1-483 changes to pilon.changes [pilon] Writing updated NODE_6791_length_483_cov_58.312155_pilon to pilon.fasta [pilon] Writing NODE_6792_length_483_cov_31.353591:1-483 changes to pilon.changes [pilon] Writing updated NODE_6792_length_483_cov_31.353591_pilon to pilon.fasta [pilon] Writing NODE_6793_length_483_cov_28.325967:1-483 changes to pilon.changes [pilon] Writing updated NODE_6793_length_483_cov_28.325967_pilon to pilon.fasta [pilon] Writing NODE_6794_length_483_cov_25.560773:1-483 changes to pilon.changes [pilon] Writing updated NODE_6794_length_483_cov_25.560773_pilon to pilon.fasta [pilon] Writing NODE_6795_length_483_cov_18.447514:1-483 changes to pilon.changes [pilon] Writing updated NODE_6795_length_483_cov_18.447514_pilon to pilon.fasta [pilon] Writing NODE_6796_length_483_cov_18.099448:1-483 changes to pilon.changes [pilon] Writing updated NODE_6796_length_483_cov_18.099448_pilon to pilon.fasta [pilon] Writing NODE_6797_length_483_cov_18.052486:1-483 changes to pilon.changes [pilon] Writing updated NODE_6797_length_483_cov_18.052486_pilon to pilon.fasta [pilon] Writing NODE_6798_length_483_cov_18.013812:1-483 changes to pilon.changes [pilon] Writing updated NODE_6798_length_483_cov_18.013812_pilon to pilon.fasta [pilon] Writing NODE_6799_length_483_cov_16.160221:1-483 changes to pilon.changes [pilon] Writing updated NODE_6799_length_483_cov_16.160221_pilon to pilon.fasta [pilon] Writing NODE_6800_length_483_cov_14.872928:1-483 changes to pilon.changes [pilon] Writing updated NODE_6800_length_483_cov_14.872928_pilon to pilon.fasta [pilon] Writing NODE_6801_length_483_cov_13.240331:1-483 changes to pilon.changes [pilon] Writing updated NODE_6801_length_483_cov_13.240331_pilon to pilon.fasta [pilon] Writing NODE_6802_length_483_cov_3.726519:1-483 changes to pilon.changes [pilon] Writing updated NODE_6802_length_483_cov_3.726519_pilon to pilon.fasta [pilon] Writing NODE_6803_length_483_cov_2.624309:1-483 changes to pilon.changes [pilon] Writing updated NODE_6803_length_483_cov_2.624309_pilon to pilon.fasta [pilon] Writing NODE_6804_length_483_cov_2.312155:1-483 changes to pilon.changes [pilon] Writing updated NODE_6804_length_483_cov_2.312155_pilon to pilon.fasta [pilon] Writing NODE_6805_length_483_cov_1.660221:1-483 changes to pilon.changes [pilon] Writing updated NODE_6805_length_483_cov_1.660221_pilon to pilon.fasta [pilon] Writing NODE_6806_length_483_cov_1.505525:1-483 changes to pilon.changes [pilon] Writing updated NODE_6806_length_483_cov_1.505525_pilon to pilon.fasta [pilon] Writing NODE_6807_length_483_cov_1.069061:1-483 changes to pilon.changes [pilon] Writing updated NODE_6807_length_483_cov_1.069061_pilon to pilon.fasta [pilon] Writing NODE_6808_length_483_cov_0.925414:1-483 changes to pilon.changes [pilon] Writing updated NODE_6808_length_483_cov_0.925414_pilon to pilon.fasta [pilon] Writing NODE_6809_length_483_cov_0.723757:1-483 changes to pilon.changes [pilon] Writing updated NODE_6809_length_483_cov_0.723757_pilon to pilon.fasta [pilon] Writing NODE_6810_length_482_cov_45.202216:1-482 changes to pilon.changes [pilon] Writing updated NODE_6810_length_482_cov_45.202216_pilon to pilon.fasta [pilon] Writing NODE_6811_length_482_cov_34.770083:1-482 changes to pilon.changes [pilon] Writing updated NODE_6811_length_482_cov_34.770083_pilon to pilon.fasta [pilon] Writing NODE_6812_length_482_cov_34.706371:1-482 changes to pilon.changes [pilon] Writing updated NODE_6812_length_482_cov_34.706371_pilon to pilon.fasta [pilon] Writing NODE_6813_length_482_cov_26.537396:1-482 changes to pilon.changes [pilon] Writing updated NODE_6813_length_482_cov_26.537396_pilon to pilon.fasta [pilon] Writing NODE_6814_length_482_cov_24.229917:1-482 changes to pilon.changes [pilon] Writing updated NODE_6814_length_482_cov_24.229917_pilon to pilon.fasta [pilon] Writing NODE_6815_length_482_cov_14.249307:1-482 changes to pilon.changes [pilon] Writing updated NODE_6815_length_482_cov_14.249307_pilon to pilon.fasta [pilon] Writing NODE_6816_length_482_cov_2.335180:1-482 changes to pilon.changes [pilon] Writing updated NODE_6816_length_482_cov_2.335180_pilon to pilon.fasta [pilon] Writing NODE_6817_length_482_cov_2.036011:1-482 changes to pilon.changes [pilon] Writing updated NODE_6817_length_482_cov_2.036011_pilon to pilon.fasta [pilon] Writing NODE_6818_length_482_cov_1.698061:1-482 changes to pilon.changes [pilon] Writing updated NODE_6818_length_482_cov_1.698061_pilon to pilon.fasta [pilon] Writing NODE_6819_length_482_cov_1.592798:1-482 changes to pilon.changes [pilon] Writing updated NODE_6819_length_482_cov_1.592798_pilon to pilon.fasta [pilon] Writing NODE_6820_length_482_cov_1.556787:1-482 changes to pilon.changes [pilon] Writing updated NODE_6820_length_482_cov_1.556787_pilon to pilon.fasta [pilon] Writing NODE_6821_length_482_cov_1.479224:1-482 changes to pilon.changes [pilon] Writing updated NODE_6821_length_482_cov_1.479224_pilon to pilon.fasta [pilon] Writing NODE_6822_length_482_cov_1.249307:1-482 changes to pilon.changes [pilon] Writing updated NODE_6822_length_482_cov_1.249307_pilon to pilon.fasta [pilon] Writing NODE_6823_length_482_cov_0.631579:1-482 changes to pilon.changes [pilon] Writing updated NODE_6823_length_482_cov_0.631579_pilon to pilon.fasta [pilon] Writing NODE_6824_length_482_cov_0.490305:1-482 changes to pilon.changes [pilon] Writing updated NODE_6824_length_482_cov_0.490305_pilon to pilon.fasta [pilon] Writing NODE_6825_length_481_cov_46.300000:1-481 changes to pilon.changes [pilon] Writing updated NODE_6825_length_481_cov_46.300000_pilon to pilon.fasta [pilon] Writing NODE_6826_length_481_cov_38.116667:1-481 changes to pilon.changes [pilon] Writing updated NODE_6826_length_481_cov_38.116667_pilon to pilon.fasta [pilon] Writing NODE_6827_length_481_cov_27.755556:1-481 changes to pilon.changes [pilon] Writing updated NODE_6827_length_481_cov_27.755556_pilon to pilon.fasta [pilon] Writing NODE_6828_length_481_cov_24.561111:1-481 changes to pilon.changes [pilon] Writing updated NODE_6828_length_481_cov_24.561111_pilon to pilon.fasta [pilon] Writing NODE_6829_length_481_cov_21.605556:1-481 changes to pilon.changes [pilon] Writing updated NODE_6829_length_481_cov_21.605556_pilon to pilon.fasta [pilon] Writing NODE_6830_length_481_cov_19.052778:1-481 changes to pilon.changes [pilon] Writing updated NODE_6830_length_481_cov_19.052778_pilon to pilon.fasta [pilon] Writing NODE_6831_length_481_cov_17.969444:1-481 changes to pilon.changes [pilon] Writing updated NODE_6831_length_481_cov_17.969444_pilon to pilon.fasta [pilon] Writing NODE_6832_length_481_cov_17.094444:1-481 changes to pilon.changes [pilon] Writing updated NODE_6832_length_481_cov_17.094444_pilon to pilon.fasta [pilon] Writing NODE_6833_length_481_cov_15.913889:1-481 changes to pilon.changes [pilon] Writing updated NODE_6833_length_481_cov_15.913889_pilon to pilon.fasta [pilon] Writing NODE_6834_length_481_cov_14.575000:1-481 changes to pilon.changes [pilon] Writing updated NODE_6834_length_481_cov_14.575000_pilon to pilon.fasta [pilon] Writing NODE_6835_length_481_cov_14.555556:1-481 changes to pilon.changes [pilon] Writing updated NODE_6835_length_481_cov_14.555556_pilon to pilon.fasta [pilon] Writing NODE_6836_length_481_cov_12.616667:1-481 changes to pilon.changes [pilon] Writing updated NODE_6836_length_481_cov_12.616667_pilon to pilon.fasta [pilon] Writing NODE_6837_length_481_cov_10.452778:1-481 changes to pilon.changes [pilon] Writing updated NODE_6837_length_481_cov_10.452778_pilon to pilon.fasta [pilon] Writing NODE_6838_length_481_cov_9.500000:1-481 changes to pilon.changes [pilon] Writing updated NODE_6838_length_481_cov_9.500000_pilon to pilon.fasta [pilon] Writing NODE_6839_length_481_cov_7.488889:1-481 changes to pilon.changes [pilon] Writing updated NODE_6839_length_481_cov_7.488889_pilon to pilon.fasta [pilon] Writing NODE_6840_length_481_cov_6.586111:1-481 changes to pilon.changes [pilon] Writing updated NODE_6840_length_481_cov_6.586111_pilon to pilon.fasta [pilon] Writing NODE_6841_length_481_cov_2.866667:1-481 changes to pilon.changes [pilon] Writing updated NODE_6841_length_481_cov_2.866667_pilon to pilon.fasta [pilon] Writing NODE_6842_length_481_cov_2.686111:1-481 changes to pilon.changes [pilon] Writing updated NODE_6842_length_481_cov_2.686111_pilon to pilon.fasta [pilon] Writing NODE_6843_length_481_cov_2.250000:1-481 changes to pilon.changes [pilon] Writing updated NODE_6843_length_481_cov_2.250000_pilon to pilon.fasta [pilon] Writing NODE_6844_length_481_cov_1.380556:1-481 changes to pilon.changes [pilon] Writing updated NODE_6844_length_481_cov_1.380556_pilon to pilon.fasta [pilon] Writing NODE_6845_length_481_cov_1.369444:1-481 changes to pilon.changes [pilon] Writing updated NODE_6845_length_481_cov_1.369444_pilon to pilon.fasta [pilon] Writing NODE_6846_length_481_cov_1.258333:1-481 changes to pilon.changes [pilon] Writing updated NODE_6846_length_481_cov_1.258333_pilon to pilon.fasta [pilon] Writing NODE_6847_length_481_cov_0.850000:1-481 changes to pilon.changes [pilon] Writing updated NODE_6847_length_481_cov_0.850000_pilon to pilon.fasta [pilon] Writing NODE_6848_length_481_cov_0.658333:1-481 changes to pilon.changes [pilon] Writing updated NODE_6848_length_481_cov_0.658333_pilon to pilon.fasta [pilon] Writing NODE_6849_length_480_cov_31.938719:1-480 changes to pilon.changes [pilon] Writing updated NODE_6849_length_480_cov_31.938719_pilon to pilon.fasta [pilon] Writing NODE_6850_length_480_cov_30.593315:1-480 changes to pilon.changes [pilon] Writing updated NODE_6850_length_480_cov_30.593315_pilon to pilon.fasta [pilon] Writing NODE_6851_length_480_cov_23.827298:1-480 changes to pilon.changes [pilon] Writing updated NODE_6851_length_480_cov_23.827298_pilon to pilon.fasta [pilon] Writing NODE_6852_length_480_cov_22.952646:1-480 changes to pilon.changes [pilon] Writing updated NODE_6852_length_480_cov_22.952646_pilon to pilon.fasta [pilon] Writing NODE_6853_length_480_cov_20.147632:1-480 changes to pilon.changes [pilon] Writing updated NODE_6853_length_480_cov_20.147632_pilon to pilon.fasta [pilon] Writing NODE_6854_length_480_cov_20.061281:1-480 changes to pilon.changes [pilon] Writing updated NODE_6854_length_480_cov_20.061281_pilon to pilon.fasta [pilon] Writing NODE_6855_length_480_cov_18.091922:1-480 changes to pilon.changes [pilon] Writing updated NODE_6855_length_480_cov_18.091922_pilon to pilon.fasta [pilon] Writing NODE_6856_length_480_cov_15.877437:1-480 changes to pilon.changes [pilon] Writing updated NODE_6856_length_480_cov_15.877437_pilon to pilon.fasta [pilon] Writing NODE_6857_length_480_cov_15.367688:1-480 changes to pilon.changes [pilon] Writing updated NODE_6857_length_480_cov_15.367688_pilon to pilon.fasta [pilon] Writing NODE_6858_length_480_cov_15.353760:1-480 changes to pilon.changes [pilon] Writing updated NODE_6858_length_480_cov_15.353760_pilon to pilon.fasta [pilon] Writing NODE_6859_length_480_cov_15.270195:1-480 changes to pilon.changes [pilon] Writing updated NODE_6859_length_480_cov_15.270195_pilon to pilon.fasta [pilon] Writing NODE_6860_length_480_cov_14.389972:1-480 changes to pilon.changes [pilon] Writing updated NODE_6860_length_480_cov_14.389972_pilon to pilon.fasta [pilon] Writing NODE_6861_length_480_cov_13.922006:1-480 changes to pilon.changes [pilon] Writing updated NODE_6861_length_480_cov_13.922006_pilon to pilon.fasta [pilon] Writing NODE_6862_length_480_cov_12.949861:1-480 changes to pilon.changes [pilon] Writing updated NODE_6862_length_480_cov_12.949861_pilon to pilon.fasta [pilon] Writing NODE_6863_length_480_cov_11.693593:1-480 changes to pilon.changes [pilon] Writing updated NODE_6863_length_480_cov_11.693593_pilon to pilon.fasta [pilon] Writing NODE_6864_length_480_cov_9.821727:1-480 changes to pilon.changes [pilon] Writing updated NODE_6864_length_480_cov_9.821727_pilon to pilon.fasta [pilon] Writing NODE_6865_length_480_cov_6.933148:1-480 changes to pilon.changes [pilon] Writing updated NODE_6865_length_480_cov_6.933148_pilon to pilon.fasta [pilon] Writing NODE_6866_length_480_cov_6.540390:1-480 changes to pilon.changes [pilon] Writing updated NODE_6866_length_480_cov_6.540390_pilon to pilon.fasta [pilon] Writing NODE_6867_length_480_cov_5.821727:1-480 changes to pilon.changes [pilon] Writing updated NODE_6867_length_480_cov_5.821727_pilon to pilon.fasta [pilon] Writing NODE_6868_length_480_cov_2.523677:1-480 changes to pilon.changes [pilon] Writing updated NODE_6868_length_480_cov_2.523677_pilon to pilon.fasta [pilon] Writing NODE_6869_length_480_cov_0.518106:1-480 changes to pilon.changes [pilon] Writing updated NODE_6869_length_480_cov_0.518106_pilon to pilon.fasta [pilon] Writing NODE_6870_length_480_cov_0.493036:1-480 changes to pilon.changes [pilon] Writing updated NODE_6870_length_480_cov_0.493036_pilon to pilon.fasta [pilon] Writing NODE_6871_length_479_cov_50.513966:1-479 changes to pilon.changes [pilon] Writing updated NODE_6871_length_479_cov_50.513966_pilon to pilon.fasta [pilon] Writing NODE_6872_length_479_cov_29.153631:1-479 changes to pilon.changes [pilon] Writing updated NODE_6872_length_479_cov_29.153631_pilon to pilon.fasta [pilon] Writing NODE_6873_length_479_cov_27.108939:1-479 changes to pilon.changes [pilon] Writing updated NODE_6873_length_479_cov_27.108939_pilon to pilon.fasta [pilon] Writing NODE_6874_length_479_cov_26.312849:1-479 changes to pilon.changes [pilon] Writing updated NODE_6874_length_479_cov_26.312849_pilon to pilon.fasta [pilon] Writing NODE_6875_length_479_cov_20.351955:1-479 changes to pilon.changes [pilon] Writing updated NODE_6875_length_479_cov_20.351955_pilon to pilon.fasta [pilon] Writing NODE_6876_length_479_cov_15.075419:1-479 changes to pilon.changes [pilon] Writing updated NODE_6876_length_479_cov_15.075419_pilon to pilon.fasta [pilon] Writing NODE_6877_length_479_cov_13.301676:1-479 changes to pilon.changes [pilon] Writing updated NODE_6877_length_479_cov_13.301676_pilon to pilon.fasta [pilon] Writing NODE_6878_length_479_cov_11.751397:1-479 changes to pilon.changes [pilon] Writing updated NODE_6878_length_479_cov_11.751397_pilon to pilon.fasta [pilon] Writing NODE_6879_length_479_cov_11.706704:1-479 changes to pilon.changes [pilon] Writing updated NODE_6879_length_479_cov_11.706704_pilon to pilon.fasta [pilon] Writing NODE_6880_length_479_cov_10.086592:1-479 changes to pilon.changes [pilon] Writing updated NODE_6880_length_479_cov_10.086592_pilon to pilon.fasta [pilon] Writing NODE_6881_length_479_cov_6.891061:1-479 changes to pilon.changes [pilon] Writing updated NODE_6881_length_479_cov_6.891061_pilon to pilon.fasta [pilon] Writing NODE_6882_length_479_cov_2.684358:1-479 changes to pilon.changes [pilon] Writing updated NODE_6882_length_479_cov_2.684358_pilon to pilon.fasta [pilon] Writing NODE_6883_length_479_cov_1.103352:1-479 changes to pilon.changes [pilon] Writing updated NODE_6883_length_479_cov_1.103352_pilon to pilon.fasta [pilon] Writing NODE_6884_length_479_cov_0.896648:1-479 changes to pilon.changes [pilon] Writing updated NODE_6884_length_479_cov_0.896648_pilon to pilon.fasta [pilon] Writing NODE_6885_length_478_cov_52.977591:1-478 changes to pilon.changes [pilon] Writing updated NODE_6885_length_478_cov_52.977591_pilon to pilon.fasta [pilon] Writing NODE_6886_length_478_cov_29.383754:1-478 changes to pilon.changes [pilon] Writing updated NODE_6886_length_478_cov_29.383754_pilon to pilon.fasta [pilon] Writing NODE_6887_length_478_cov_22.526611:1-478 changes to pilon.changes [pilon] Writing updated NODE_6887_length_478_cov_22.526611_pilon to pilon.fasta [pilon] Writing NODE_6888_length_478_cov_10.476190:1-478 changes to pilon.changes [pilon] Writing updated NODE_6888_length_478_cov_10.476190_pilon to pilon.fasta [pilon] Writing NODE_6889_length_478_cov_2.812325:1-478 changes to pilon.changes [pilon] Writing updated NODE_6889_length_478_cov_2.812325_pilon to pilon.fasta [pilon] Writing NODE_6890_length_478_cov_2.761905:1-478 changes to pilon.changes [pilon] Writing updated NODE_6890_length_478_cov_2.761905_pilon to pilon.fasta [pilon] Writing NODE_6891_length_478_cov_2.162465:1-478 changes to pilon.changes [pilon] Writing updated NODE_6891_length_478_cov_2.162465_pilon to pilon.fasta [pilon] Writing NODE_6892_length_478_cov_0.890756:1-478 changes to pilon.changes [pilon] Writing updated NODE_6892_length_478_cov_0.890756_pilon to pilon.fasta [pilon] Writing NODE_6893_length_478_cov_0.809524:1-478 changes to pilon.changes [pilon] Writing updated NODE_6893_length_478_cov_0.809524_pilon to pilon.fasta [pilon] Writing NODE_6894_length_477_cov_55.598315:1-477 changes to pilon.changes [pilon] Writing updated NODE_6894_length_477_cov_55.598315_pilon to pilon.fasta [pilon] Writing NODE_6895_length_477_cov_46.547753:1-477 changes to pilon.changes [pilon] Writing updated NODE_6895_length_477_cov_46.547753_pilon to pilon.fasta [pilon] Writing NODE_6896_length_477_cov_36.497191:1-477 changes to pilon.changes [pilon] Writing updated NODE_6896_length_477_cov_36.497191_pilon to pilon.fasta [pilon] Writing NODE_6897_length_477_cov_34.160112:1-477 changes to pilon.changes [pilon] Writing updated NODE_6897_length_477_cov_34.160112_pilon to pilon.fasta [pilon] Writing NODE_6898_length_477_cov_25.165730:1-477 changes to pilon.changes [pilon] Writing updated NODE_6898_length_477_cov_25.165730_pilon to pilon.fasta [pilon] Writing NODE_6899_length_477_cov_23.432584:1-477 changes to pilon.changes [pilon] Writing updated NODE_6899_length_477_cov_23.432584_pilon to pilon.fasta [pilon] Writing NODE_6900_length_477_cov_23.314607:1-477 changes to pilon.changes [pilon] Writing updated NODE_6900_length_477_cov_23.314607_pilon to pilon.fasta [pilon] Writing NODE_6901_length_477_cov_22.792135:1-477 changes to pilon.changes [pilon] Writing updated NODE_6901_length_477_cov_22.792135_pilon to pilon.fasta [pilon] Writing NODE_6902_length_477_cov_22.466292:1-477 changes to pilon.changes [pilon] Writing updated NODE_6902_length_477_cov_22.466292_pilon to pilon.fasta [pilon] Writing NODE_6903_length_477_cov_19.727528:1-477 changes to pilon.changes [pilon] Writing updated NODE_6903_length_477_cov_19.727528_pilon to pilon.fasta [pilon] Writing NODE_6904_length_477_cov_18.213483:1-477 changes to pilon.changes [pilon] Writing updated NODE_6904_length_477_cov_18.213483_pilon to pilon.fasta [pilon] Writing NODE_6905_length_477_cov_17.342697:1-477 changes to pilon.changes [pilon] Writing updated NODE_6905_length_477_cov_17.342697_pilon to pilon.fasta [pilon] Writing NODE_6906_length_477_cov_16.994382:1-477 changes to pilon.changes [pilon] Writing updated NODE_6906_length_477_cov_16.994382_pilon to pilon.fasta [pilon] Writing NODE_6907_length_477_cov_16.345506:1-477 changes to pilon.changes [pilon] Writing updated NODE_6907_length_477_cov_16.345506_pilon to pilon.fasta [pilon] Writing NODE_6908_length_477_cov_12.727528:1-477 changes to pilon.changes [pilon] Writing updated NODE_6908_length_477_cov_12.727528_pilon to pilon.fasta [pilon] Writing NODE_6909_length_477_cov_10.578652:1-477 changes to pilon.changes [pilon] Writing updated NODE_6909_length_477_cov_10.578652_pilon to pilon.fasta [pilon] Writing NODE_6910_length_477_cov_8.662921:1-477 changes to pilon.changes [pilon] Writing updated NODE_6910_length_477_cov_8.662921_pilon to pilon.fasta [pilon] Writing NODE_6911_length_477_cov_8.544944:1-477 changes to pilon.changes [pilon] Writing updated NODE_6911_length_477_cov_8.544944_pilon to pilon.fasta [pilon] Writing NODE_6912_length_477_cov_3.747191:1-477 changes to pilon.changes [pilon] Writing updated NODE_6912_length_477_cov_3.747191_pilon to pilon.fasta [pilon] Writing NODE_6913_length_477_cov_3.179775:1-477 changes to pilon.changes [pilon] Writing updated NODE_6913_length_477_cov_3.179775_pilon to pilon.fasta [pilon] Writing NODE_6914_length_477_cov_2.536517:1-477 changes to pilon.changes [pilon] Writing updated NODE_6914_length_477_cov_2.536517_pilon to pilon.fasta [pilon] Writing NODE_6915_length_477_cov_2.334270:1-477 changes to pilon.changes [pilon] Writing updated NODE_6915_length_477_cov_2.334270_pilon to pilon.fasta [pilon] Writing NODE_6916_length_477_cov_1.199438:1-477 changes to pilon.changes [pilon] Writing updated NODE_6916_length_477_cov_1.199438_pilon to pilon.fasta [pilon] Writing NODE_6917_length_476_cov_65.718310:1-476 changes to pilon.changes [pilon] Writing updated NODE_6917_length_476_cov_65.718310_pilon to pilon.fasta [pilon] Writing NODE_6918_length_476_cov_26.419718:1-476 changes to pilon.changes [pilon] Writing updated NODE_6918_length_476_cov_26.419718_pilon to pilon.fasta [pilon] Writing NODE_6919_length_476_cov_23.504225:1-476 changes to pilon.changes [pilon] Writing updated NODE_6919_length_476_cov_23.504225_pilon to pilon.fasta [pilon] Writing NODE_6920_length_476_cov_23.256338:1-476 changes to pilon.changes [pilon] Writing updated NODE_6920_length_476_cov_23.256338_pilon to pilon.fasta [pilon] Writing NODE_6921_length_476_cov_18.690141:1-476 changes to pilon.changes [pilon] Writing updated NODE_6921_length_476_cov_18.690141_pilon to pilon.fasta [pilon] Writing NODE_6922_length_476_cov_16.464789:1-476 changes to pilon.changes [pilon] Writing updated NODE_6922_length_476_cov_16.464789_pilon to pilon.fasta [pilon] Writing NODE_6923_length_476_cov_14.166197:1-476 changes to pilon.changes [pilon] Writing updated NODE_6923_length_476_cov_14.166197_pilon to pilon.fasta [pilon] Writing NODE_6924_length_476_cov_8.180282:1-476 changes to pilon.changes [pilon] Writing updated NODE_6924_length_476_cov_8.180282_pilon to pilon.fasta [pilon] Writing NODE_6925_length_476_cov_7.997183:1-476 changes to pilon.changes [pilon] Writing updated NODE_6925_length_476_cov_7.997183_pilon to pilon.fasta [pilon] Writing NODE_6926_length_476_cov_3.608451:1-476 changes to pilon.changes [pilon] Writing updated NODE_6926_length_476_cov_3.608451_pilon to pilon.fasta [pilon] Writing NODE_6927_length_476_cov_2.042254:1-476 changes to pilon.changes [pilon] Writing updated NODE_6927_length_476_cov_2.042254_pilon to pilon.fasta [pilon] Writing NODE_6928_length_476_cov_1.828169:1-476 changes to pilon.changes [pilon] Writing updated NODE_6928_length_476_cov_1.828169_pilon to pilon.fasta [pilon] Writing NODE_6929_length_476_cov_0.797183:1-476 changes to pilon.changes [pilon] Writing updated NODE_6929_length_476_cov_0.797183_pilon to pilon.fasta [pilon] Writing NODE_6930_length_476_cov_0.735211:1-476 changes to pilon.changes [pilon] Writing updated NODE_6930_length_476_cov_0.735211_pilon to pilon.fasta [pilon] Writing NODE_6931_length_476_cov_0.732394:1-476 changes to pilon.changes [pilon] Writing updated NODE_6931_length_476_cov_0.732394_pilon to pilon.fasta [pilon] Writing NODE_6932_length_475_cov_56.957627:1-475 changes to pilon.changes [pilon] Writing updated NODE_6932_length_475_cov_56.957627_pilon to pilon.fasta [pilon] Writing NODE_6933_length_475_cov_42.237288:1-475 changes to pilon.changes [pilon] Writing updated NODE_6933_length_475_cov_42.237288_pilon to pilon.fasta [pilon] Writing NODE_6934_length_475_cov_29.234463:1-475 changes to pilon.changes [pilon] Writing updated NODE_6934_length_475_cov_29.234463_pilon to pilon.fasta [pilon] Writing NODE_6935_length_475_cov_22.014124:1-475 changes to pilon.changes [pilon] Writing updated NODE_6935_length_475_cov_22.014124_pilon to pilon.fasta [pilon] Writing NODE_6936_length_475_cov_21.474576:1-475 changes to pilon.changes [pilon] Writing updated NODE_6936_length_475_cov_21.474576_pilon to pilon.fasta [pilon] Writing NODE_6937_length_475_cov_19.858757:1-475 changes to pilon.changes [pilon] Writing updated NODE_6937_length_475_cov_19.858757_pilon to pilon.fasta [pilon] Writing NODE_6938_length_475_cov_16.615819:1-475 changes to pilon.changes [pilon] Writing updated NODE_6938_length_475_cov_16.615819_pilon to pilon.fasta [pilon] Writing NODE_6939_length_475_cov_10.819209:1-475 changes to pilon.changes [pilon] Writing updated NODE_6939_length_475_cov_10.819209_pilon to pilon.fasta [pilon] Writing NODE_6940_length_475_cov_3.155367:1-475 changes to pilon.changes [pilon] Writing updated NODE_6940_length_475_cov_3.155367_pilon to pilon.fasta [pilon] Writing NODE_6941_length_475_cov_1.180791:1-475 changes to pilon.changes [pilon] Writing updated NODE_6941_length_475_cov_1.180791_pilon to pilon.fasta [pilon] Writing NODE_6942_length_475_cov_1.031073:1-475 changes to pilon.changes [pilon] Writing updated NODE_6942_length_475_cov_1.031073_pilon to pilon.fasta [pilon] Writing NODE_6943_length_474_cov_64.747875:1-474 changes to pilon.changes [pilon] Writing updated NODE_6943_length_474_cov_64.747875_pilon to pilon.fasta [pilon] Writing NODE_6944_length_474_cov_40.708215:1-474 changes to pilon.changes [pilon] Writing updated NODE_6944_length_474_cov_40.708215_pilon to pilon.fasta [pilon] Writing NODE_6945_length_474_cov_31.954674:1-474 changes to pilon.changes [pilon] Writing updated NODE_6945_length_474_cov_31.954674_pilon to pilon.fasta [pilon] Writing NODE_6946_length_474_cov_29.215297:1-474 changes to pilon.changes [pilon] Writing updated NODE_6946_length_474_cov_29.215297_pilon to pilon.fasta [pilon] Writing NODE_6947_length_474_cov_23.498584:1-474 changes to pilon.changes [pilon] Writing updated NODE_6947_length_474_cov_23.498584_pilon to pilon.fasta [pilon] Writing NODE_6948_length_474_cov_22.263456:1-474 changes to pilon.changes [pilon] Writing updated NODE_6948_length_474_cov_22.263456_pilon to pilon.fasta [pilon] Writing NODE_6949_length_474_cov_19.858357:1-474 changes to pilon.changes [pilon] Writing updated NODE_6949_length_474_cov_19.858357_pilon to pilon.fasta [pilon] Writing NODE_6950_length_474_cov_17.243626:1-474 changes to pilon.changes [pilon] Writing updated NODE_6950_length_474_cov_17.243626_pilon to pilon.fasta [pilon] Writing NODE_6951_length_474_cov_16.875354:1-474 changes to pilon.changes [pilon] Writing updated NODE_6951_length_474_cov_16.875354_pilon to pilon.fasta [pilon] Writing NODE_6952_length_474_cov_14.883853:1-474 changes to pilon.changes [pilon] Writing updated NODE_6952_length_474_cov_14.883853_pilon to pilon.fasta [pilon] Writing NODE_6953_length_474_cov_13.575071:1-474 changes to pilon.changes [pilon] Writing updated NODE_6953_length_474_cov_13.575071_pilon to pilon.fasta [pilon] Writing NODE_6954_length_474_cov_13.555241:1-474 changes to pilon.changes [pilon] Writing updated NODE_6954_length_474_cov_13.555241_pilon to pilon.fasta [pilon] Writing NODE_6955_length_474_cov_11.685552:1-474 changes to pilon.changes [pilon] Writing updated NODE_6955_length_474_cov_11.685552_pilon to pilon.fasta [pilon] Writing NODE_6956_length_474_cov_11.498584:1-474 changes to pilon.changes [pilon] Writing updated NODE_6956_length_474_cov_11.498584_pilon to pilon.fasta [pilon] Writing NODE_6957_length_474_cov_9.053824:1-474 changes to pilon.changes [pilon] Writing updated NODE_6957_length_474_cov_9.053824_pilon to pilon.fasta [pilon] Writing NODE_6958_length_474_cov_7.728045:1-474 changes to pilon.changes [pilon] Writing updated NODE_6958_length_474_cov_7.728045_pilon to pilon.fasta [pilon] Writing NODE_6959_length_474_cov_5.220963:1-474 changes to pilon.changes [pilon] Writing updated NODE_6959_length_474_cov_5.220963_pilon to pilon.fasta [pilon] Writing NODE_6960_length_474_cov_1.943343:1-474 changes to pilon.changes [pilon] Writing updated NODE_6960_length_474_cov_1.943343_pilon to pilon.fasta [pilon] Writing NODE_6961_length_474_cov_1.575071:1-474 changes to pilon.changes [pilon] Writing updated NODE_6961_length_474_cov_1.575071_pilon to pilon.fasta [pilon] Writing NODE_6962_length_474_cov_1.515581:1-474 changes to pilon.changes [pilon] Writing updated NODE_6962_length_474_cov_1.515581_pilon to pilon.fasta [pilon] Writing NODE_6963_length_474_cov_1.096317:1-474 changes to pilon.changes [pilon] Writing updated NODE_6963_length_474_cov_1.096317_pilon to pilon.fasta [pilon] Writing NODE_6964_length_474_cov_1.062323:1-474 changes to pilon.changes [pilon] Writing updated NODE_6964_length_474_cov_1.062323_pilon to pilon.fasta [pilon] Writing NODE_6965_length_474_cov_0.866856:1-474 changes to pilon.changes [pilon] Writing updated NODE_6965_length_474_cov_0.866856_pilon to pilon.fasta [pilon] Writing NODE_6966_length_474_cov_0.838527:1-474 changes to pilon.changes [pilon] Writing updated NODE_6966_length_474_cov_0.838527_pilon to pilon.fasta [pilon] Writing NODE_6967_length_473_cov_70.139205:1-473 changes to pilon.changes [pilon] Writing updated NODE_6967_length_473_cov_70.139205_pilon to pilon.fasta [pilon] Writing NODE_6968_length_473_cov_47.582386:1-473 changes to pilon.changes [pilon] Writing updated NODE_6968_length_473_cov_47.582386_pilon to pilon.fasta [pilon] Writing NODE_6969_length_473_cov_45.900568:1-473 changes to pilon.changes [pilon] Writing updated NODE_6969_length_473_cov_45.900568_pilon to pilon.fasta [pilon] Writing NODE_6970_length_473_cov_34.036932:1-473 changes to pilon.changes [pilon] Writing updated NODE_6970_length_473_cov_34.036932_pilon to pilon.fasta [pilon] Writing NODE_6971_length_473_cov_33.696023:1-473 changes to pilon.changes [pilon] Writing updated NODE_6971_length_473_cov_33.696023_pilon to pilon.fasta [pilon] Writing NODE_6972_length_473_cov_29.178977:1-473 changes to pilon.changes [pilon] Writing updated NODE_6972_length_473_cov_29.178977_pilon to pilon.fasta [pilon] Writing NODE_6973_length_473_cov_23.971591:1-473 changes to pilon.changes [pilon] Writing updated NODE_6973_length_473_cov_23.971591_pilon to pilon.fasta [pilon] Writing NODE_6974_length_473_cov_20.156250:1-473 changes to pilon.changes [pilon] Writing updated NODE_6974_length_473_cov_20.156250_pilon to pilon.fasta [pilon] Writing NODE_6975_length_473_cov_18.573864:1-473 changes to pilon.changes [pilon] Writing updated NODE_6975_length_473_cov_18.573864_pilon to pilon.fasta [pilon] Writing NODE_6976_length_473_cov_16.852273:1-473 changes to pilon.changes [pilon] Writing updated NODE_6976_length_473_cov_16.852273_pilon to pilon.fasta [pilon] Writing NODE_6977_length_473_cov_14.247159:1-473 changes to pilon.changes [pilon] Writing updated NODE_6977_length_473_cov_14.247159_pilon to pilon.fasta [pilon] Writing NODE_6978_length_473_cov_8.255682:1-473 changes to pilon.changes [pilon] Writing updated NODE_6978_length_473_cov_8.255682_pilon to pilon.fasta [pilon] Writing NODE_6979_length_473_cov_1.136364:1-473 changes to pilon.changes [pilon] Writing updated NODE_6979_length_473_cov_1.136364_pilon to pilon.fasta [pilon] Writing NODE_6980_length_473_cov_1.090909:1-473 changes to pilon.changes [pilon] Writing updated NODE_6980_length_473_cov_1.090909_pilon to pilon.fasta [pilon] Writing NODE_6981_length_473_cov_0.855114:1-473 changes to pilon.changes [pilon] Writing updated NODE_6981_length_473_cov_0.855114_pilon to pilon.fasta [pilon] Writing NODE_6982_length_473_cov_0.823864:1-473 changes to pilon.changes [pilon] Writing updated NODE_6982_length_473_cov_0.823864_pilon to pilon.fasta [pilon] Writing NODE_6983_length_473_cov_0.721591:1-473 changes to pilon.changes [pilon] Writing updated NODE_6983_length_473_cov_0.721591_pilon to pilon.fasta [pilon] Writing NODE_6984_length_473_cov_0.687500:1-473 changes to pilon.changes [pilon] Writing updated NODE_6984_length_473_cov_0.687500_pilon to pilon.fasta [pilon] Writing NODE_6985_length_473_cov_0.670455:1-473 changes to pilon.changes [pilon] Writing updated NODE_6985_length_473_cov_0.670455_pilon to pilon.fasta [pilon] Writing NODE_6986_length_472_cov_27.051282:1-472 changes to pilon.changes [pilon] Writing updated NODE_6986_length_472_cov_27.051282_pilon to pilon.fasta [pilon] Writing NODE_6987_length_472_cov_23.048433:1-472 changes to pilon.changes [pilon] Writing updated NODE_6987_length_472_cov_23.048433_pilon to pilon.fasta [pilon] Writing NODE_6988_length_472_cov_10.532764:1-472 changes to pilon.changes [pilon] Writing updated NODE_6988_length_472_cov_10.532764_pilon to pilon.fasta [pilon] Writing NODE_6989_length_472_cov_8.341880:1-472 changes to pilon.changes [pilon] Writing updated NODE_6989_length_472_cov_8.341880_pilon to pilon.fasta [pilon] Writing NODE_6990_length_472_cov_1.000000:1-472 changes to pilon.changes [pilon] Writing updated NODE_6990_length_472_cov_1.000000_pilon to pilon.fasta [pilon] Writing NODE_6991_length_472_cov_0.632479:1-472 changes to pilon.changes [pilon] Writing updated NODE_6991_length_472_cov_0.632479_pilon to pilon.fasta [pilon] Writing NODE_6992_length_472_cov_0.529915:1-472 changes to pilon.changes [pilon] Writing updated NODE_6992_length_472_cov_0.529915_pilon to pilon.fasta [pilon] Writing NODE_6993_length_472_cov_0.484330:1-472 changes to pilon.changes [pilon] Writing updated NODE_6993_length_472_cov_0.484330_pilon to pilon.fasta [pilon] Writing NODE_6994_length_471_cov_58.068571:1-471 changes to pilon.changes [pilon] Writing updated NODE_6994_length_471_cov_58.068571_pilon to pilon.fasta [pilon] Writing NODE_6995_length_471_cov_43.342857:1-471 changes to pilon.changes [pilon] Writing updated NODE_6995_length_471_cov_43.342857_pilon to pilon.fasta [pilon] Writing NODE_6996_length_471_cov_37.365714:1-471 changes to pilon.changes [pilon] Writing updated NODE_6996_length_471_cov_37.365714_pilon to pilon.fasta [pilon] Writing NODE_6997_length_471_cov_36.711429:1-471 changes to pilon.changes [pilon] Writing updated NODE_6997_length_471_cov_36.711429_pilon to pilon.fasta [pilon] Writing NODE_6998_length_471_cov_28.480000:1-471 changes to pilon.changes [pilon] Writing updated NODE_6998_length_471_cov_28.480000_pilon to pilon.fasta [pilon] Writing NODE_6999_length_471_cov_27.834286:1-471 changes to pilon.changes [pilon] Writing updated NODE_6999_length_471_cov_27.834286_pilon to pilon.fasta [pilon] Writing NODE_7000_length_471_cov_27.682857:1-471 changes to pilon.changes [pilon] Writing updated NODE_7000_length_471_cov_27.682857_pilon to pilon.fasta [pilon] Writing NODE_7001_length_471_cov_21.800000:1-471 changes to pilon.changes [pilon] Writing updated NODE_7001_length_471_cov_21.800000_pilon to pilon.fasta [pilon] Writing NODE_7002_length_471_cov_19.882857:1-471 changes to pilon.changes [pilon] Writing updated NODE_7002_length_471_cov_19.882857_pilon to pilon.fasta [pilon] Writing NODE_7003_length_471_cov_17.914286:1-471 changes to pilon.changes [pilon] Writing updated NODE_7003_length_471_cov_17.914286_pilon to pilon.fasta [pilon] Writing NODE_7004_length_471_cov_12.857143:1-471 changes to pilon.changes [pilon] Writing updated NODE_7004_length_471_cov_12.857143_pilon to pilon.fasta [pilon] Writing NODE_7005_length_471_cov_2.971429:1-471 changes to pilon.changes [pilon] Writing updated NODE_7005_length_471_cov_2.971429_pilon to pilon.fasta [pilon] Writing NODE_7006_length_471_cov_2.360000:1-471 changes to pilon.changes [pilon] Writing updated NODE_7006_length_471_cov_2.360000_pilon to pilon.fasta [pilon] Writing NODE_7007_length_471_cov_2.185714:1-471 changes to pilon.changes [pilon] Writing updated NODE_7007_length_471_cov_2.185714_pilon to pilon.fasta [pilon] Writing NODE_7008_length_471_cov_1.740000:1-471 changes to pilon.changes [pilon] Writing updated NODE_7008_length_471_cov_1.740000_pilon to pilon.fasta [pilon] Writing NODE_7009_length_471_cov_1.340000:1-471 changes to pilon.changes [pilon] Writing updated NODE_7009_length_471_cov_1.340000_pilon to pilon.fasta [pilon] Writing NODE_7010_length_471_cov_1.251429:1-471 changes to pilon.changes [pilon] Writing updated NODE_7010_length_471_cov_1.251429_pilon to pilon.fasta [pilon] Writing NODE_7011_length_471_cov_1.040000:1-471 changes to pilon.changes [pilon] Writing updated NODE_7011_length_471_cov_1.040000_pilon to pilon.fasta [pilon] Writing NODE_7012_length_471_cov_0.608571:1-471 changes to pilon.changes [pilon] Writing updated NODE_7012_length_471_cov_0.608571_pilon to pilon.fasta [pilon] Writing NODE_7013_length_470_cov_79.352436:1-470 changes to pilon.changes [pilon] Writing updated NODE_7013_length_470_cov_79.352436_pilon to pilon.fasta [pilon] Writing NODE_7014_length_470_cov_65.183381:1-470 changes to pilon.changes [pilon] Writing updated NODE_7014_length_470_cov_65.183381_pilon to pilon.fasta [pilon] Writing NODE_7015_length_470_cov_63.123209:1-470 changes to pilon.changes [pilon] Writing updated NODE_7015_length_470_cov_63.123209_pilon to pilon.fasta [pilon] Writing NODE_7016_length_470_cov_59.266476:1-470 changes to pilon.changes [pilon] Writing updated NODE_7016_length_470_cov_59.266476_pilon to pilon.fasta [pilon] Writing NODE_7017_length_470_cov_45.656160:1-470 changes to pilon.changes [pilon] Writing updated NODE_7017_length_470_cov_45.656160_pilon to pilon.fasta [pilon] Writing NODE_7018_length_470_cov_32.309456:1-470 changes to pilon.changes [pilon] Writing updated NODE_7018_length_470_cov_32.309456_pilon to pilon.fasta [pilon] Writing NODE_7019_length_470_cov_28.197708:1-470 changes to pilon.changes [pilon] Writing updated NODE_7019_length_470_cov_28.197708_pilon to pilon.fasta [pilon] Writing NODE_7020_length_470_cov_21.982808:1-470 changes to pilon.changes [pilon] Writing updated NODE_7020_length_470_cov_21.982808_pilon to pilon.fasta [pilon] Writing NODE_7021_length_470_cov_21.865330:1-470 changes to pilon.changes [pilon] Writing updated NODE_7021_length_470_cov_21.865330_pilon to pilon.fasta [pilon] Writing NODE_7022_length_470_cov_19.564470:1-470 changes to pilon.changes [pilon] Writing updated NODE_7022_length_470_cov_19.564470_pilon to pilon.fasta [pilon] Writing NODE_7023_length_470_cov_18.174785:1-470 changes to pilon.changes [pilon] Writing updated NODE_7023_length_470_cov_18.174785_pilon to pilon.fasta [pilon] Writing NODE_7024_length_470_cov_17.094556:1-470 changes to pilon.changes [pilon] Writing updated NODE_7024_length_470_cov_17.094556_pilon to pilon.fasta [pilon] Writing NODE_7025_length_470_cov_11.128940:1-470 changes to pilon.changes [pilon] Writing updated NODE_7025_length_470_cov_11.128940_pilon to pilon.fasta [pilon] Writing NODE_7026_length_470_cov_1.670487:1-470 changes to pilon.changes [pilon] Writing updated NODE_7026_length_470_cov_1.670487_pilon to pilon.fasta [pilon] Writing NODE_7027_length_470_cov_1.444126:1-470 changes to pilon.changes [pilon] Writing updated NODE_7027_length_470_cov_1.444126_pilon to pilon.fasta [pilon] Writing NODE_7028_length_470_cov_0.647564:1-470 changes to pilon.changes [pilon] Writing updated NODE_7028_length_470_cov_0.647564_pilon to pilon.fasta [pilon] Writing NODE_7029_length_469_cov_38.554598:1-469 changes to pilon.changes [pilon] Writing updated NODE_7029_length_469_cov_38.554598_pilon to pilon.fasta [pilon] Writing NODE_7030_length_469_cov_29.775862:1-469 changes to pilon.changes [pilon] Writing updated NODE_7030_length_469_cov_29.775862_pilon to pilon.fasta [pilon] Writing NODE_7031_length_469_cov_24.497126:1-469 changes to pilon.changes [pilon] Writing updated NODE_7031_length_469_cov_24.497126_pilon to pilon.fasta [pilon] Writing NODE_7032_length_469_cov_16.258621:1-469 changes to pilon.changes [pilon] Writing updated NODE_7032_length_469_cov_16.258621_pilon to pilon.fasta [pilon] Writing NODE_7033_length_469_cov_14.307471:1-469 changes to pilon.changes [pilon] Writing updated NODE_7033_length_469_cov_14.307471_pilon to pilon.fasta [pilon] Writing NODE_7034_length_469_cov_12.600575:1-469 changes to pilon.changes [pilon] Writing updated NODE_7034_length_469_cov_12.600575_pilon to pilon.fasta [pilon] Writing NODE_7035_length_469_cov_12.583333:1-469 changes to pilon.changes [pilon] Writing updated NODE_7035_length_469_cov_12.583333_pilon to pilon.fasta [pilon] Writing NODE_7036_length_469_cov_1.448276:1-469 changes to pilon.changes [pilon] Writing updated NODE_7036_length_469_cov_1.448276_pilon to pilon.fasta [pilon] Writing NODE_7037_length_469_cov_0.899425:1-469 changes to pilon.changes [pilon] Writing updated NODE_7037_length_469_cov_0.899425_pilon to pilon.fasta [pilon] Writing NODE_7038_length_468_cov_29.691643:1-468 changes to pilon.changes [pilon] Writing updated NODE_7038_length_468_cov_29.691643_pilon to pilon.fasta [pilon] Writing NODE_7039_length_468_cov_25.953890:1-468 changes to pilon.changes [pilon] Writing updated NODE_7039_length_468_cov_25.953890_pilon to pilon.fasta [pilon] Writing NODE_7040_length_468_cov_24.933718:1-468 changes to pilon.changes [pilon] Writing updated NODE_7040_length_468_cov_24.933718_pilon to pilon.fasta [pilon] Writing NODE_7041_length_468_cov_24.216138:1-468 changes to pilon.changes [pilon] Writing updated NODE_7041_length_468_cov_24.216138_pilon to pilon.fasta [pilon] Writing NODE_7042_length_468_cov_22.910663:1-468 changes to pilon.changes [pilon] Writing updated NODE_7042_length_468_cov_22.910663_pilon to pilon.fasta [pilon] Writing NODE_7043_length_468_cov_21.322767:1-468 changes to pilon.changes [pilon] Writing updated NODE_7043_length_468_cov_21.322767_pilon to pilon.fasta [pilon] Writing NODE_7044_length_468_cov_21.178674:1-468 changes to pilon.changes [pilon] Writing updated NODE_7044_length_468_cov_21.178674_pilon to pilon.fasta [pilon] Writing NODE_7045_length_468_cov_20.936599:1-468 changes to pilon.changes [pilon] Writing updated NODE_7045_length_468_cov_20.936599_pilon to pilon.fasta [pilon] Writing NODE_7046_length_468_cov_20.429395:1-468 changes to pilon.changes [pilon] Writing updated NODE_7046_length_468_cov_20.429395_pilon to pilon.fasta [pilon] Writing NODE_7047_length_468_cov_15.452450:1-468 changes to pilon.changes [pilon] Writing updated NODE_7047_length_468_cov_15.452450_pilon to pilon.fasta [pilon] Writing NODE_7048_length_468_cov_14.533141:1-468 changes to pilon.changes [pilon] Writing updated NODE_7048_length_468_cov_14.533141_pilon to pilon.fasta [pilon] Writing NODE_7049_length_468_cov_13.345821:1-468 changes to pilon.changes [pilon] Writing updated NODE_7049_length_468_cov_13.345821_pilon to pilon.fasta [pilon] Writing NODE_7050_length_468_cov_10.233429:1-468 changes to pilon.changes [pilon] Writing updated NODE_7050_length_468_cov_10.233429_pilon to pilon.fasta [pilon] Writing NODE_7051_length_468_cov_1.680115:1-468 changes to pilon.changes [pilon] Writing updated NODE_7051_length_468_cov_1.680115_pilon to pilon.fasta [pilon] Writing NODE_7052_length_468_cov_1.406340:1-468 changes to pilon.changes [pilon] Writing updated NODE_7052_length_468_cov_1.406340_pilon to pilon.fasta [pilon] Writing NODE_7053_length_468_cov_1.296830:1-468 changes to pilon.changes [pilon] Writing updated NODE_7053_length_468_cov_1.296830_pilon to pilon.fasta [pilon] Writing NODE_7054_length_468_cov_1.144092:1-468 changes to pilon.changes [pilon] Writing updated NODE_7054_length_468_cov_1.144092_pilon to pilon.fasta [pilon] Writing NODE_7055_length_468_cov_0.916427:1-468 changes to pilon.changes [pilon] Writing updated NODE_7055_length_468_cov_0.916427_pilon to pilon.fasta [pilon] Writing NODE_7056_length_468_cov_0.536023:1-468 changes to pilon.changes [pilon] Writing updated NODE_7056_length_468_cov_0.536023_pilon to pilon.fasta [pilon] Writing NODE_7057_length_467_cov_68.526012:1-467 changes to pilon.changes [pilon] Writing updated NODE_7057_length_467_cov_68.526012_pilon to pilon.fasta [pilon] Writing NODE_7058_length_467_cov_36.398844:1-467 changes to pilon.changes [pilon] Writing updated NODE_7058_length_467_cov_36.398844_pilon to pilon.fasta [pilon] Writing NODE_7059_length_467_cov_32.789017:1-467 changes to pilon.changes [pilon] Writing updated NODE_7059_length_467_cov_32.789017_pilon to pilon.fasta [pilon] Writing NODE_7060_length_467_cov_32.289017:1-467 changes to pilon.changes [pilon] Writing updated NODE_7060_length_467_cov_32.289017_pilon to pilon.fasta [pilon] Writing NODE_7061_length_467_cov_31.554913:1-467 changes to pilon.changes [pilon] Writing updated NODE_7061_length_467_cov_31.554913_pilon to pilon.fasta [pilon] Writing NODE_7062_length_467_cov_28.921965:1-467 changes to pilon.changes [pilon] Writing updated NODE_7062_length_467_cov_28.921965_pilon to pilon.fasta [pilon] Writing NODE_7063_length_467_cov_23.274566:1-467 changes to pilon.changes [pilon] Writing updated NODE_7063_length_467_cov_23.274566_pilon to pilon.fasta [pilon] Writing NODE_7064_length_467_cov_19.921965:1-467 changes to pilon.changes [pilon] Writing updated NODE_7064_length_467_cov_19.921965_pilon to pilon.fasta [pilon] Writing NODE_7065_length_467_cov_8.809249:1-467 changes to pilon.changes [pilon] Writing updated NODE_7065_length_467_cov_8.809249_pilon to pilon.fasta [pilon] Writing NODE_7066_length_467_cov_5.089595:1-467 changes to pilon.changes [pilon] Writing updated NODE_7066_length_467_cov_5.089595_pilon to pilon.fasta [pilon] Writing NODE_7067_length_467_cov_4.823699:1-467 changes to pilon.changes [pilon] Writing updated NODE_7067_length_467_cov_4.823699_pilon to pilon.fasta [pilon] Writing NODE_7068_length_467_cov_3.826590:1-467 changes to pilon.changes [pilon] Writing updated NODE_7068_length_467_cov_3.826590_pilon to pilon.fasta [pilon] Writing NODE_7069_length_467_cov_2.537572:1-467 changes to pilon.changes [pilon] Writing updated NODE_7069_length_467_cov_2.537572_pilon to pilon.fasta [pilon] Writing NODE_7070_length_467_cov_2.323699:1-467 changes to pilon.changes [pilon] Writing updated NODE_7070_length_467_cov_2.323699_pilon to pilon.fasta [pilon] Writing NODE_7071_length_467_cov_1.736994:1-467 changes to pilon.changes [pilon] Writing updated NODE_7071_length_467_cov_1.736994_pilon to pilon.fasta [pilon] Writing NODE_7072_length_467_cov_0.757225:1-467 changes to pilon.changes [pilon] Writing updated NODE_7072_length_467_cov_0.757225_pilon to pilon.fasta [pilon] Writing NODE_7073_length_467_cov_0.502890:1-467 changes to pilon.changes [pilon] Writing updated NODE_7073_length_467_cov_0.502890_pilon to pilon.fasta [pilon] Writing NODE_7074_length_466_cov_50.336232:1-466 changes to pilon.changes [pilon] Writing updated NODE_7074_length_466_cov_50.336232_pilon to pilon.fasta [pilon] Writing NODE_7075_length_466_cov_36.304348:1-466 changes to pilon.changes [pilon] Writing updated NODE_7075_length_466_cov_36.304348_pilon to pilon.fasta [pilon] Writing NODE_7076_length_466_cov_31.768116:1-466 changes to pilon.changes [pilon] Writing updated NODE_7076_length_466_cov_31.768116_pilon to pilon.fasta [pilon] Writing NODE_7077_length_466_cov_26.649275:1-466 changes to pilon.changes [pilon] Writing updated NODE_7077_length_466_cov_26.649275_pilon to pilon.fasta [pilon] Writing NODE_7078_length_466_cov_25.086957:1-466 changes to pilon.changes [pilon] Writing updated NODE_7078_length_466_cov_25.086957_pilon to pilon.fasta [pilon] Writing NODE_7079_length_466_cov_24.431884:1-466 changes to pilon.changes [pilon] Writing updated NODE_7079_length_466_cov_24.431884_pilon to pilon.fasta [pilon] Writing NODE_7080_length_466_cov_21.371014:1-466 changes to pilon.changes [pilon] Writing updated NODE_7080_length_466_cov_21.371014_pilon to pilon.fasta [pilon] Writing NODE_7081_length_466_cov_20.266667:1-466 changes to pilon.changes [pilon] Writing updated NODE_7081_length_466_cov_20.266667_pilon to pilon.fasta [pilon] Writing NODE_7082_length_466_cov_2.017391:1-466 changes to pilon.changes [pilon] Writing updated NODE_7082_length_466_cov_2.017391_pilon to pilon.fasta [pilon] Writing NODE_7083_length_466_cov_1.826087:1-466 changes to pilon.changes [pilon] Writing updated NODE_7083_length_466_cov_1.826087_pilon to pilon.fasta [pilon] Writing NODE_7084_length_466_cov_0.779710:1-466 changes to pilon.changes [pilon] Writing updated NODE_7084_length_466_cov_0.779710_pilon to pilon.fasta [pilon] Writing NODE_7085_length_465_cov_59.619186:1-465 changes to pilon.changes [pilon] Writing updated NODE_7085_length_465_cov_59.619186_pilon to pilon.fasta [pilon] Writing NODE_7086_length_465_cov_47.180233:1-465 changes to pilon.changes [pilon] Writing updated NODE_7086_length_465_cov_47.180233_pilon to pilon.fasta [pilon] Writing NODE_7087_length_465_cov_31.741279:1-465 changes to pilon.changes [pilon] Writing updated NODE_7087_length_465_cov_31.741279_pilon to pilon.fasta [pilon] Writing NODE_7088_length_465_cov_29.688953:1-465 changes to pilon.changes [pilon] Writing updated NODE_7088_length_465_cov_29.688953_pilon to pilon.fasta [pilon] Writing NODE_7089_length_465_cov_28.950581:1-465 changes to pilon.changes [pilon] Writing updated NODE_7089_length_465_cov_28.950581_pilon to pilon.fasta [pilon] Writing NODE_7090_length_465_cov_26.255814:1-465 changes to pilon.changes [pilon] Writing updated NODE_7090_length_465_cov_26.255814_pilon to pilon.fasta [pilon] Writing NODE_7091_length_465_cov_23.607558:1-465 changes to pilon.changes [pilon] Writing updated NODE_7091_length_465_cov_23.607558_pilon to pilon.fasta [pilon] Writing NODE_7092_length_465_cov_22.543605:1-465 changes to pilon.changes [pilon] Writing updated NODE_7092_length_465_cov_22.543605_pilon to pilon.fasta [pilon] Writing NODE_7093_length_465_cov_20.805233:1-465 changes to pilon.changes [pilon] Writing updated NODE_7093_length_465_cov_20.805233_pilon to pilon.fasta [pilon] Writing NODE_7094_length_465_cov_19.546512:1-465 changes to pilon.changes [pilon] Writing updated NODE_7094_length_465_cov_19.546512_pilon to pilon.fasta [pilon] Writing NODE_7095_length_465_cov_19.357558:1-465 changes to pilon.changes [pilon] Writing updated NODE_7095_length_465_cov_19.357558_pilon to pilon.fasta [pilon] Writing NODE_7096_length_465_cov_19.229651:1-465 changes to pilon.changes [pilon] Writing updated NODE_7096_length_465_cov_19.229651_pilon to pilon.fasta [pilon] Writing NODE_7097_length_465_cov_17.514535:1-465 changes to pilon.changes [pilon] Writing updated NODE_7097_length_465_cov_17.514535_pilon to pilon.fasta [pilon] Writing NODE_7098_length_465_cov_16.752907:1-465 changes to pilon.changes [pilon] Writing updated NODE_7098_length_465_cov_16.752907_pilon to pilon.fasta [pilon] Writing NODE_7099_length_465_cov_13.738372:1-465 changes to pilon.changes [pilon] Writing updated NODE_7099_length_465_cov_13.738372_pilon to pilon.fasta [pilon] Writing NODE_7100_length_465_cov_12.584302:1-465 changes to pilon.changes [pilon] Writing updated NODE_7100_length_465_cov_12.584302_pilon to pilon.fasta [pilon] Writing NODE_7101_length_465_cov_12.453488:1-465 changes to pilon.changes [pilon] Writing updated NODE_7101_length_465_cov_12.453488_pilon to pilon.fasta [pilon] Writing NODE_7102_length_465_cov_12.377907:1-465 changes to pilon.changes [pilon] Writing updated NODE_7102_length_465_cov_12.377907_pilon to pilon.fasta [pilon] Writing NODE_7103_length_465_cov_12.299419:1-465 changes to pilon.changes [pilon] Writing updated NODE_7103_length_465_cov_12.299419_pilon to pilon.fasta [pilon] Writing NODE_7104_length_465_cov_12.159884:1-465 changes to pilon.changes [pilon] Writing updated NODE_7104_length_465_cov_12.159884_pilon to pilon.fasta [pilon] Writing NODE_7105_length_465_cov_12.066860:1-465 changes to pilon.changes [pilon] Writing updated NODE_7105_length_465_cov_12.066860_pilon to pilon.fasta [pilon] Writing NODE_7106_length_465_cov_11.909884:1-465 changes to pilon.changes [pilon] Writing updated NODE_7106_length_465_cov_11.909884_pilon to pilon.fasta [pilon] Writing NODE_7107_length_465_cov_11.787791:1-465 changes to pilon.changes [pilon] Writing updated NODE_7107_length_465_cov_11.787791_pilon to pilon.fasta [pilon] Writing NODE_7108_length_465_cov_11.546512:1-465 changes to pilon.changes [pilon] Writing updated NODE_7108_length_465_cov_11.546512_pilon to pilon.fasta [pilon] Writing NODE_7109_length_465_cov_11.273256:1-465 changes to pilon.changes [pilon] Writing updated NODE_7109_length_465_cov_11.273256_pilon to pilon.fasta [pilon] Writing NODE_7110_length_465_cov_11.223837:1-465 changes to pilon.changes [pilon] Writing updated NODE_7110_length_465_cov_11.223837_pilon to pilon.fasta [pilon] Writing NODE_7111_length_465_cov_10.375000:1-465 changes to pilon.changes [pilon] Writing updated NODE_7111_length_465_cov_10.375000_pilon to pilon.fasta [pilon] Writing NODE_7112_length_465_cov_8.488372:1-465 changes to pilon.changes [pilon] Writing updated NODE_7112_length_465_cov_8.488372_pilon to pilon.fasta [pilon] Writing NODE_7113_length_465_cov_7.029070:1-465 changes to pilon.changes [pilon] Writing updated NODE_7113_length_465_cov_7.029070_pilon to pilon.fasta [pilon] Writing NODE_7114_length_465_cov_6.872093:1-465 changes to pilon.changes [pilon] Writing updated NODE_7114_length_465_cov_6.872093_pilon to pilon.fasta [pilon] Writing NODE_7115_length_465_cov_6.700581:1-465 changes to pilon.changes [pilon] Writing updated NODE_7115_length_465_cov_6.700581_pilon to pilon.fasta [pilon] Writing NODE_7116_length_465_cov_4.857558:1-465 changes to pilon.changes [pilon] Writing updated NODE_7116_length_465_cov_4.857558_pilon to pilon.fasta [pilon] Writing NODE_7117_length_465_cov_1.563953:1-465 changes to pilon.changes [pilon] Writing updated NODE_7117_length_465_cov_1.563953_pilon to pilon.fasta [pilon] Writing NODE_7118_length_465_cov_0.802326:1-465 changes to pilon.changes [pilon] Writing updated NODE_7118_length_465_cov_0.802326_pilon to pilon.fasta [pilon] Writing NODE_7119_length_465_cov_0.784884:1-465 changes to pilon.changes [pilon] Writing updated NODE_7119_length_465_cov_0.784884_pilon to pilon.fasta [pilon] Writing NODE_7120_length_465_cov_0.752907:1-465 changes to pilon.changes [pilon] Writing updated NODE_7120_length_465_cov_0.752907_pilon to pilon.fasta [pilon] Writing NODE_7121_length_465_cov_0.351744:1-465 changes to pilon.changes [pilon] Writing updated NODE_7121_length_465_cov_0.351744_pilon to pilon.fasta [pilon] Writing NODE_7122_length_464_cov_58.177843:1-464 changes to pilon.changes [pilon] Writing updated NODE_7122_length_464_cov_58.177843_pilon to pilon.fasta [pilon] Writing NODE_7123_length_464_cov_48.556851:1-464 changes to pilon.changes [pilon] Writing updated NODE_7123_length_464_cov_48.556851_pilon to pilon.fasta [pilon] Writing NODE_7124_length_464_cov_26.046647:1-464 changes to pilon.changes [pilon] Writing updated NODE_7124_length_464_cov_26.046647_pilon to pilon.fasta [pilon] Writing NODE_7125_length_464_cov_25.903790:1-464 changes to pilon.changes [pilon] Writing updated NODE_7125_length_464_cov_25.903790_pilon to pilon.fasta [pilon] Writing NODE_7126_length_464_cov_23.002915:1-464 changes to pilon.changes [pilon] Writing updated NODE_7126_length_464_cov_23.002915_pilon to pilon.fasta [pilon] Writing NODE_7127_length_464_cov_17.717201:1-464 changes to pilon.changes [pilon] Writing updated NODE_7127_length_464_cov_17.717201_pilon to pilon.fasta [pilon] Writing NODE_7128_length_464_cov_14.997085:1-464 changes to pilon.changes [pilon] Writing updated NODE_7128_length_464_cov_14.997085_pilon to pilon.fasta [pilon] Writing NODE_7129_length_464_cov_13.399417:1-464 changes to pilon.changes [pilon] Writing updated NODE_7129_length_464_cov_13.399417_pilon to pilon.fasta [pilon] Writing NODE_7130_length_464_cov_12.160350:1-464 changes to pilon.changes [pilon] Writing updated NODE_7130_length_464_cov_12.160350_pilon to pilon.fasta [pilon] Writing NODE_7131_length_464_cov_9.274052:1-464 changes to pilon.changes [pilon] Writing updated NODE_7131_length_464_cov_9.274052_pilon to pilon.fasta [pilon] Writing NODE_7132_length_464_cov_7.113703:1-464 changes to pilon.changes [pilon] Writing updated NODE_7132_length_464_cov_7.113703_pilon to pilon.fasta [pilon] Writing NODE_7133_length_464_cov_0.580175:1-464 changes to pilon.changes [pilon] Writing updated NODE_7133_length_464_cov_0.580175_pilon to pilon.fasta [pilon] Writing NODE_7134_length_463_cov_41.011696:1-463 changes to pilon.changes [pilon] Writing updated NODE_7134_length_463_cov_41.011696_pilon to pilon.fasta [pilon] Writing NODE_7135_length_463_cov_28.096491:1-463 changes to pilon.changes [pilon] Writing updated NODE_7135_length_463_cov_28.096491_pilon to pilon.fasta [pilon] Writing NODE_7136_length_463_cov_25.523392:1-463 changes to pilon.changes [pilon] Writing updated NODE_7136_length_463_cov_25.523392_pilon to pilon.fasta [pilon] Writing NODE_7137_length_463_cov_19.783626:1-463 changes to pilon.changes [pilon] Writing updated NODE_7137_length_463_cov_19.783626_pilon to pilon.fasta [pilon] Writing NODE_7138_length_463_cov_18.321637:1-463 changes to pilon.changes [pilon] Writing updated NODE_7138_length_463_cov_18.321637_pilon to pilon.fasta [pilon] Writing NODE_7139_length_463_cov_14.122807:1-463 changes to pilon.changes [pilon] Writing updated NODE_7139_length_463_cov_14.122807_pilon to pilon.fasta [pilon] Writing NODE_7140_length_463_cov_3.035088:1-463 changes to pilon.changes [pilon] Writing updated NODE_7140_length_463_cov_3.035088_pilon to pilon.fasta [pilon] Writing NODE_7141_length_463_cov_1.274854:1-463 changes to pilon.changes [pilon] Writing updated NODE_7141_length_463_cov_1.274854_pilon to pilon.fasta [pilon] Writing NODE_7142_length_463_cov_0.988304:1-463 changes to pilon.changes [pilon] Writing updated NODE_7142_length_463_cov_0.988304_pilon to pilon.fasta [pilon] Writing NODE_7143_length_463_cov_0.985380:1-463 changes to pilon.changes [pilon] Writing updated NODE_7143_length_463_cov_0.985380_pilon to pilon.fasta [pilon] Writing NODE_7144_length_463_cov_0.944444:1-463 changes to pilon.changes [pilon] Writing updated NODE_7144_length_463_cov_0.944444_pilon to pilon.fasta [pilon] Writing NODE_7145_length_462_cov_69.428152:1-462 changes to pilon.changes [pilon] Writing updated NODE_7145_length_462_cov_69.428152_pilon to pilon.fasta [pilon] Writing NODE_7146_length_462_cov_49.199413:1-462 changes to pilon.changes [pilon] Writing updated NODE_7146_length_462_cov_49.199413_pilon to pilon.fasta [pilon] Writing NODE_7147_length_462_cov_33.539589:1-462 changes to pilon.changes [pilon] Writing updated NODE_7147_length_462_cov_33.539589_pilon to pilon.fasta [pilon] Writing NODE_7148_length_462_cov_32.551320:1-462 changes to pilon.changes [pilon] Writing updated NODE_7148_length_462_cov_32.551320_pilon to pilon.fasta [pilon] Writing NODE_7149_length_462_cov_31.548387:1-462 changes to pilon.changes [pilon] Writing updated NODE_7149_length_462_cov_31.548387_pilon to pilon.fasta [pilon] Writing NODE_7150_length_462_cov_28.249267:1-462 changes to pilon.changes [pilon] Writing updated NODE_7150_length_462_cov_28.249267_pilon to pilon.fasta [pilon] Writing NODE_7151_length_462_cov_25.404692:1-462 changes to pilon.changes [pilon] Writing updated NODE_7151_length_462_cov_25.404692_pilon to pilon.fasta [pilon] Writing NODE_7152_length_462_cov_25.079179:1-462 changes to pilon.changes [pilon] Writing updated NODE_7152_length_462_cov_25.079179_pilon to pilon.fasta [pilon] Writing NODE_7153_length_462_cov_24.741935:1-462 changes to pilon.changes [pilon] Writing updated NODE_7153_length_462_cov_24.741935_pilon to pilon.fasta [pilon] Writing NODE_7154_length_462_cov_20.985337:1-462 changes to pilon.changes [pilon] Writing updated NODE_7154_length_462_cov_20.985337_pilon to pilon.fasta [pilon] Writing NODE_7155_length_462_cov_18.202346:1-462 changes to pilon.changes [pilon] Writing updated NODE_7155_length_462_cov_18.202346_pilon to pilon.fasta [pilon] Writing NODE_7156_length_462_cov_18.146628:1-462 changes to pilon.changes [pilon] Writing updated NODE_7156_length_462_cov_18.146628_pilon to pilon.fasta [pilon] Writing NODE_7157_length_462_cov_14.296188:1-462 changes to pilon.changes [pilon] Writing updated NODE_7157_length_462_cov_14.296188_pilon to pilon.fasta [pilon] Writing NODE_7158_length_462_cov_11.219941:1-462 changes to pilon.changes [pilon] Writing updated NODE_7158_length_462_cov_11.219941_pilon to pilon.fasta [pilon] Writing NODE_7159_length_462_cov_10.976540:1-462 changes to pilon.changes [pilon] Writing updated NODE_7159_length_462_cov_10.976540_pilon to pilon.fasta [pilon] Writing NODE_7160_length_462_cov_10.521994:1-462 changes to pilon.changes [pilon] Writing updated NODE_7160_length_462_cov_10.521994_pilon to pilon.fasta [pilon] Writing NODE_7161_length_462_cov_8.677419:1-462 changes to pilon.changes [pilon] Writing updated NODE_7161_length_462_cov_8.677419_pilon to pilon.fasta [pilon] Writing NODE_7162_length_462_cov_1.970674:1-462 changes to pilon.changes [pilon] Writing updated NODE_7162_length_462_cov_1.970674_pilon to pilon.fasta [pilon] Writing NODE_7163_length_462_cov_1.917889:1-462 changes to pilon.changes [pilon] Writing updated NODE_7163_length_462_cov_1.917889_pilon to pilon.fasta [pilon] Writing NODE_7164_length_462_cov_1.607038:1-462 changes to pilon.changes [pilon] Writing updated NODE_7164_length_462_cov_1.607038_pilon to pilon.fasta [pilon] Writing NODE_7165_length_461_cov_72.667647:1-461 changes to pilon.changes [pilon] Writing updated NODE_7165_length_461_cov_72.667647_pilon to pilon.fasta [pilon] Writing NODE_7166_length_461_cov_49.311765:1-461 changes to pilon.changes [pilon] Writing updated NODE_7166_length_461_cov_49.311765_pilon to pilon.fasta [pilon] Writing NODE_7167_length_461_cov_41.555882:1-461 changes to pilon.changes [pilon] Writing updated NODE_7167_length_461_cov_41.555882_pilon to pilon.fasta [pilon] Writing NODE_7168_length_461_cov_33.135294:1-461 changes to pilon.changes [pilon] Writing updated NODE_7168_length_461_cov_33.135294_pilon to pilon.fasta [pilon] Writing NODE_7169_length_461_cov_29.132353:1-461 changes to pilon.changes [pilon] Writing updated NODE_7169_length_461_cov_29.132353_pilon to pilon.fasta [pilon] Writing NODE_7170_length_461_cov_17.767647:1-461 changes to pilon.changes [pilon] Writing updated NODE_7170_length_461_cov_17.767647_pilon to pilon.fasta [pilon] Writing NODE_7171_length_461_cov_16.823529:1-461 changes to pilon.changes [pilon] Writing updated NODE_7171_length_461_cov_16.823529_pilon to pilon.fasta [pilon] Writing NODE_7172_length_461_cov_12.879412:1-461 changes to pilon.changes [pilon] Writing updated NODE_7172_length_461_cov_12.879412_pilon to pilon.fasta [pilon] Writing NODE_7173_length_461_cov_10.955882:1-461 changes to pilon.changes [pilon] Writing updated NODE_7173_length_461_cov_10.955882_pilon to pilon.fasta [pilon] Writing NODE_7174_length_461_cov_10.905882:1-461 changes to pilon.changes [pilon] Writing updated NODE_7174_length_461_cov_10.905882_pilon to pilon.fasta [pilon] Writing NODE_7175_length_461_cov_3.155882:1-461 changes to pilon.changes [pilon] Writing updated NODE_7175_length_461_cov_3.155882_pilon to pilon.fasta [pilon] Writing NODE_7176_length_461_cov_2.805882:1-461 changes to pilon.changes [pilon] Writing updated NODE_7176_length_461_cov_2.805882_pilon to pilon.fasta [pilon] Writing NODE_7177_length_461_cov_2.770588:1-461 changes to pilon.changes [pilon] Writing updated NODE_7177_length_461_cov_2.770588_pilon to pilon.fasta [pilon] Writing NODE_7178_length_461_cov_2.047059:1-461 changes to pilon.changes [pilon] Writing updated NODE_7178_length_461_cov_2.047059_pilon to pilon.fasta [pilon] Writing NODE_7179_length_461_cov_2.005882:1-461 changes to pilon.changes [pilon] Writing updated NODE_7179_length_461_cov_2.005882_pilon to pilon.fasta [pilon] Writing NODE_7180_length_461_cov_1.120588:1-461 changes to pilon.changes [pilon] Writing updated NODE_7180_length_461_cov_1.120588_pilon to pilon.fasta [pilon] Writing NODE_7181_length_461_cov_0.617647:1-461 changes to pilon.changes [pilon] Writing updated NODE_7181_length_461_cov_0.617647_pilon to pilon.fasta [pilon] Writing NODE_7182_length_460_cov_64.407080:1-460 changes to pilon.changes [pilon] Writing updated NODE_7182_length_460_cov_64.407080_pilon to pilon.fasta [pilon] Writing NODE_7183_length_460_cov_47.746313:1-460 changes to pilon.changes [pilon] Writing updated NODE_7183_length_460_cov_47.746313_pilon to pilon.fasta [pilon] Writing NODE_7184_length_460_cov_44.442478:1-460 changes to pilon.changes [pilon] Writing updated NODE_7184_length_460_cov_44.442478_pilon to pilon.fasta [pilon] Writing NODE_7185_length_460_cov_38.920354:1-460 changes to pilon.changes [pilon] Writing updated NODE_7185_length_460_cov_38.920354_pilon to pilon.fasta [pilon] Writing NODE_7186_length_460_cov_33.572271:1-460 changes to pilon.changes [pilon] Writing updated NODE_7186_length_460_cov_33.572271_pilon to pilon.fasta [pilon] Writing NODE_7187_length_460_cov_31.029499:1-460 changes to pilon.changes [pilon] Writing updated NODE_7187_length_460_cov_31.029499_pilon to pilon.fasta [pilon] Writing NODE_7188_length_460_cov_27.811209:1-460 changes to pilon.changes [pilon] Writing updated NODE_7188_length_460_cov_27.811209_pilon to pilon.fasta [pilon] Writing NODE_7189_length_460_cov_22.094395:1-460 changes to pilon.changes [pilon] Writing updated NODE_7189_length_460_cov_22.094395_pilon to pilon.fasta [pilon] Writing NODE_7190_length_460_cov_18.079646:1-460 changes to pilon.changes [pilon] Writing updated NODE_7190_length_460_cov_18.079646_pilon to pilon.fasta [pilon] Writing NODE_7191_length_460_cov_16.970501:1-460 changes to pilon.changes [pilon] Writing updated NODE_7191_length_460_cov_16.970501_pilon to pilon.fasta [pilon] Writing NODE_7192_length_460_cov_14.542773:1-460 changes to pilon.changes [pilon] Writing updated NODE_7192_length_460_cov_14.542773_pilon to pilon.fasta [pilon] Writing NODE_7193_length_460_cov_12.525074:1-460 changes to pilon.changes [pilon] Writing updated NODE_7193_length_460_cov_12.525074_pilon to pilon.fasta [pilon] Writing NODE_7194_length_460_cov_11.867257:1-460 changes to pilon.changes [pilon] Writing updated NODE_7194_length_460_cov_11.867257_pilon to pilon.fasta [pilon] Writing NODE_7195_length_460_cov_4.554572:1-460 changes to pilon.changes [pilon] Writing updated NODE_7195_length_460_cov_4.554572_pilon to pilon.fasta [pilon] Writing NODE_7196_length_460_cov_4.513274:1-460 changes to pilon.changes [pilon] Writing updated NODE_7196_length_460_cov_4.513274_pilon to pilon.fasta [pilon] Writing NODE_7197_length_460_cov_4.333333:1-460 changes to pilon.changes [pilon] Writing updated NODE_7197_length_460_cov_4.333333_pilon to pilon.fasta [pilon] Writing NODE_7198_length_460_cov_3.486726:1-460 changes to pilon.changes [pilon] Writing updated NODE_7198_length_460_cov_3.486726_pilon to pilon.fasta [pilon] Writing NODE_7199_length_460_cov_1.333333:1-460 changes to pilon.changes [pilon] Writing updated NODE_7199_length_460_cov_1.333333_pilon to pilon.fasta [pilon] Writing NODE_7200_length_460_cov_1.292035:1-460 changes to pilon.changes [pilon] Writing updated NODE_7200_length_460_cov_1.292035_pilon to pilon.fasta [pilon] Writing NODE_7201_length_460_cov_1.141593:1-460 changes to pilon.changes [pilon] Writing updated NODE_7201_length_460_cov_1.141593_pilon to pilon.fasta [pilon] Writing NODE_7202_length_460_cov_0.749263:1-460 changes to pilon.changes [pilon] Writing updated NODE_7202_length_460_cov_0.749263_pilon to pilon.fasta [pilon] Writing NODE_7203_length_460_cov_0.592920:1-460 changes to pilon.changes [pilon] Writing updated NODE_7203_length_460_cov_0.592920_pilon to pilon.fasta [pilon] Writing NODE_7204_length_460_cov_0.280236:1-460 changes to pilon.changes [pilon] Writing updated NODE_7204_length_460_cov_0.280236_pilon to pilon.fasta [pilon] Writing NODE_7205_length_459_cov_66.721893:1-459 changes to pilon.changes [pilon] Writing updated NODE_7205_length_459_cov_66.721893_pilon to pilon.fasta [pilon] Writing NODE_7206_length_459_cov_44.097633:1-459 changes to pilon.changes [pilon] Writing updated NODE_7206_length_459_cov_44.097633_pilon to pilon.fasta [pilon] Writing NODE_7207_length_459_cov_37.532544:1-459 changes to pilon.changes [pilon] Writing updated NODE_7207_length_459_cov_37.532544_pilon to pilon.fasta [pilon] Writing NODE_7208_length_459_cov_33.772189:1-459 changes to pilon.changes [pilon] Writing updated NODE_7208_length_459_cov_33.772189_pilon to pilon.fasta [pilon] Writing NODE_7209_length_459_cov_29.136095:1-459 changes to pilon.changes [pilon] Writing updated NODE_7209_length_459_cov_29.136095_pilon to pilon.fasta [pilon] Writing NODE_7210_length_459_cov_28.420118:1-459 changes to pilon.changes [pilon] Writing updated NODE_7210_length_459_cov_28.420118_pilon to pilon.fasta [pilon] Writing NODE_7211_length_459_cov_24.458580:1-459 changes to pilon.changes [pilon] Writing updated NODE_7211_length_459_cov_24.458580_pilon to pilon.fasta [pilon] Writing NODE_7212_length_459_cov_22.523669:1-459 changes to pilon.changes [pilon] Writing updated NODE_7212_length_459_cov_22.523669_pilon to pilon.fasta [pilon] Writing NODE_7213_length_459_cov_21.618343:1-459 changes to pilon.changes [pilon] Writing updated NODE_7213_length_459_cov_21.618343_pilon to pilon.fasta [pilon] Writing NODE_7214_length_459_cov_20.775148:1-459 changes to pilon.changes [pilon] Writing updated NODE_7214_length_459_cov_20.775148_pilon to pilon.fasta [pilon] Writing NODE_7215_length_459_cov_20.218935:1-459 changes to pilon.changes [pilon] Writing updated NODE_7215_length_459_cov_20.218935_pilon to pilon.fasta [pilon] Writing NODE_7216_length_459_cov_17.130178:1-459 changes to pilon.changes [pilon] Writing updated NODE_7216_length_459_cov_17.130178_pilon to pilon.fasta [pilon] Writing NODE_7217_length_459_cov_15.695266:1-459 changes to pilon.changes [pilon] Writing updated NODE_7217_length_459_cov_15.695266_pilon to pilon.fasta [pilon] Writing NODE_7218_length_459_cov_15.423077:1-459 changes to pilon.changes [pilon] Writing updated NODE_7218_length_459_cov_15.423077_pilon to pilon.fasta [pilon] Writing NODE_7219_length_459_cov_10.408284:1-459 changes to pilon.changes [pilon] Writing updated NODE_7219_length_459_cov_10.408284_pilon to pilon.fasta [pilon] Writing NODE_7220_length_459_cov_9.254438:1-459 changes to pilon.changes [pilon] Writing updated NODE_7220_length_459_cov_9.254438_pilon to pilon.fasta [pilon] Writing NODE_7221_length_459_cov_6.334320:1-459 changes to pilon.changes [pilon] Writing updated NODE_7221_length_459_cov_6.334320_pilon to pilon.fasta [pilon] Writing NODE_7222_length_459_cov_3.934911:1-459 changes to pilon.changes [pilon] Writing updated NODE_7222_length_459_cov_3.934911_pilon to pilon.fasta [pilon] Writing NODE_7223_length_459_cov_2.284024:1-459 changes to pilon.changes [pilon] Writing updated NODE_7223_length_459_cov_2.284024_pilon to pilon.fasta [pilon] Writing NODE_7224_length_459_cov_2.100592:1-459 changes to pilon.changes [pilon] Writing updated NODE_7224_length_459_cov_2.100592_pilon to pilon.fasta [pilon] Writing NODE_7225_length_459_cov_2.020710:1-459 changes to pilon.changes [pilon] Writing updated NODE_7225_length_459_cov_2.020710_pilon to pilon.fasta [pilon] Writing NODE_7226_length_459_cov_1.488166:1-459 changes to pilon.changes [pilon] Writing updated NODE_7226_length_459_cov_1.488166_pilon to pilon.fasta [pilon] Writing NODE_7227_length_459_cov_1.230769:1-459 changes to pilon.changes [pilon] Writing updated NODE_7227_length_459_cov_1.230769_pilon to pilon.fasta [pilon] Writing NODE_7228_length_459_cov_1.121302:1-459 changes to pilon.changes [pilon] Writing updated NODE_7228_length_459_cov_1.121302_pilon to pilon.fasta [pilon] Writing NODE_7229_length_459_cov_0.772189:1-459 changes to pilon.changes [pilon] Writing updated NODE_7229_length_459_cov_0.772189_pilon to pilon.fasta [pilon] Writing NODE_7230_length_459_cov_0.473373:1-459 changes to pilon.changes [pilon] Writing updated NODE_7230_length_459_cov_0.473373_pilon to pilon.fasta [pilon] Writing NODE_7231_length_458_cov_51.329377:1-458 changes to pilon.changes [pilon] Writing updated NODE_7231_length_458_cov_51.329377_pilon to pilon.fasta [pilon] Writing NODE_7232_length_458_cov_35.445104:1-458 changes to pilon.changes [pilon] Writing updated NODE_7232_length_458_cov_35.445104_pilon to pilon.fasta [pilon] Writing NODE_7233_length_458_cov_31.994065:1-458 changes to pilon.changes [pilon] Writing updated NODE_7233_length_458_cov_31.994065_pilon to pilon.fasta [pilon] Writing NODE_7234_length_458_cov_23.925816:1-458 changes to pilon.changes [pilon] Writing updated NODE_7234_length_458_cov_23.925816_pilon to pilon.fasta [pilon] Writing NODE_7235_length_458_cov_22.534125:1-458 changes to pilon.changes [pilon] Writing updated NODE_7235_length_458_cov_22.534125_pilon to pilon.fasta [pilon] Writing NODE_7236_length_458_cov_21.258160:1-458 changes to pilon.changes [pilon] Writing updated NODE_7236_length_458_cov_21.258160_pilon to pilon.fasta [pilon] Writing NODE_7237_length_458_cov_5.940653:1-458 changes to pilon.changes [pilon] Writing updated NODE_7237_length_458_cov_5.940653_pilon to pilon.fasta [pilon] Writing NODE_7238_length_458_cov_3.207715:1-458 changes to pilon.changes [pilon] Writing updated NODE_7238_length_458_cov_3.207715_pilon to pilon.fasta [pilon] Writing NODE_7239_length_458_cov_1.738872:1-458 changes to pilon.changes [pilon] Writing updated NODE_7239_length_458_cov_1.738872_pilon to pilon.fasta [pilon] Writing NODE_7240_length_458_cov_1.347181:1-458 changes to pilon.changes [pilon] Writing updated NODE_7240_length_458_cov_1.347181_pilon to pilon.fasta [pilon] Writing NODE_7241_length_458_cov_0.997033:1-458 changes to pilon.changes [pilon] Writing updated NODE_7241_length_458_cov_0.997033_pilon to pilon.fasta [pilon] Writing NODE_7242_length_458_cov_0.931751:1-458 changes to pilon.changes [pilon] Writing updated NODE_7242_length_458_cov_0.931751_pilon to pilon.fasta [pilon] Writing NODE_7243_length_458_cov_0.706231:1-458 changes to pilon.changes [pilon] Writing updated NODE_7243_length_458_cov_0.706231_pilon to pilon.fasta [pilon] Writing NODE_7244_length_457_cov_46.949405:1-457 changes to pilon.changes [pilon] Writing updated NODE_7244_length_457_cov_46.949405_pilon to pilon.fasta [pilon] Writing NODE_7245_length_457_cov_33.017857:1-457 changes to pilon.changes [pilon] Writing updated NODE_7245_length_457_cov_33.017857_pilon to pilon.fasta [pilon] Writing NODE_7246_length_457_cov_18.595238:1-457 changes to pilon.changes [pilon] Writing updated NODE_7246_length_457_cov_18.595238_pilon to pilon.fasta [pilon] Writing NODE_7247_length_457_cov_17.300595:1-457 changes to pilon.changes [pilon] Writing updated NODE_7247_length_457_cov_17.300595_pilon to pilon.fasta [pilon] Writing NODE_7248_length_457_cov_16.702381:1-457 changes to pilon.changes [pilon] Writing updated NODE_7248_length_457_cov_16.702381_pilon to pilon.fasta [pilon] Writing NODE_7249_length_457_cov_13.434524:1-457 changes to pilon.changes [pilon] Writing updated NODE_7249_length_457_cov_13.434524_pilon to pilon.fasta [pilon] Writing NODE_7250_length_457_cov_13.363095:1-457 changes to pilon.changes [pilon] Writing updated NODE_7250_length_457_cov_13.363095_pilon to pilon.fasta [pilon] Writing NODE_7251_length_457_cov_12.270833:1-457 changes to pilon.changes [pilon] Writing updated NODE_7251_length_457_cov_12.270833_pilon to pilon.fasta [pilon] Writing NODE_7252_length_457_cov_2.955357:1-457 changes to pilon.changes [pilon] Writing updated NODE_7252_length_457_cov_2.955357_pilon to pilon.fasta [pilon] Writing NODE_7253_length_457_cov_1.383929:1-457 changes to pilon.changes [pilon] Writing updated NODE_7253_length_457_cov_1.383929_pilon to pilon.fasta [pilon] Writing NODE_7254_length_457_cov_1.360119:1-457 changes to pilon.changes [pilon] Writing updated NODE_7254_length_457_cov_1.360119_pilon to pilon.fasta [pilon] Writing NODE_7255_length_457_cov_0.958333:1-457 changes to pilon.changes [pilon] Writing updated NODE_7255_length_457_cov_0.958333_pilon to pilon.fasta [pilon] Writing NODE_7256_length_457_cov_0.541667:1-457 changes to pilon.changes [pilon] Writing updated NODE_7256_length_457_cov_0.541667_pilon to pilon.fasta [pilon] Writing NODE_7257_length_457_cov_0.377976:1-457 changes to pilon.changes [pilon] Writing updated NODE_7257_length_457_cov_0.377976_pilon to pilon.fasta [pilon] Writing NODE_7258_length_456_cov_48.698507:1-456 changes to pilon.changes [pilon] Writing updated NODE_7258_length_456_cov_48.698507_pilon to pilon.fasta [pilon] Writing NODE_7259_length_456_cov_41.200000:1-456 changes to pilon.changes [pilon] Writing updated NODE_7259_length_456_cov_41.200000_pilon to pilon.fasta [pilon] Writing NODE_7260_length_456_cov_32.226866:1-456 changes to pilon.changes [pilon] Writing updated NODE_7260_length_456_cov_32.226866_pilon to pilon.fasta [pilon] Writing NODE_7261_length_456_cov_27.379104:1-456 changes to pilon.changes [pilon] Writing updated NODE_7261_length_456_cov_27.379104_pilon to pilon.fasta [pilon] Writing NODE_7262_length_456_cov_22.510448:1-456 changes to pilon.changes [pilon] Writing updated NODE_7262_length_456_cov_22.510448_pilon to pilon.fasta [pilon] Writing NODE_7263_length_456_cov_22.307463:1-456 changes to pilon.changes [pilon] Writing updated NODE_7263_length_456_cov_22.307463_pilon to pilon.fasta [pilon] Writing NODE_7264_length_456_cov_22.194030:1-456 changes to pilon.changes [pilon] Writing updated NODE_7264_length_456_cov_22.194030_pilon to pilon.fasta [pilon] Writing NODE_7265_length_456_cov_21.695522:1-456 changes to pilon.changes [pilon] Writing updated NODE_7265_length_456_cov_21.695522_pilon to pilon.fasta [pilon] Writing NODE_7266_length_456_cov_20.713433:1-456 changes to pilon.changes [pilon] Writing updated NODE_7266_length_456_cov_20.713433_pilon to pilon.fasta [pilon] Writing NODE_7267_length_456_cov_18.474627:1-456 changes to pilon.changes [pilon] Writing updated NODE_7267_length_456_cov_18.474627_pilon to pilon.fasta [pilon] Writing NODE_7268_length_456_cov_18.089552:1-456 changes to pilon.changes [pilon] Writing updated NODE_7268_length_456_cov_18.089552_pilon to pilon.fasta [pilon] Writing NODE_7269_length_456_cov_16.074627:1-456 changes to pilon.changes [pilon] Writing updated NODE_7269_length_456_cov_16.074627_pilon to pilon.fasta [pilon] Writing NODE_7270_length_456_cov_15.564179:1-456 changes to pilon.changes [pilon] Writing updated NODE_7270_length_456_cov_15.564179_pilon to pilon.fasta [pilon] Writing NODE_7271_length_456_cov_13.850746:1-456 changes to pilon.changes [pilon] Writing updated NODE_7271_length_456_cov_13.850746_pilon to pilon.fasta [pilon] Writing NODE_7272_length_456_cov_12.244776:1-456 changes to pilon.changes [pilon] Writing updated NODE_7272_length_456_cov_12.244776_pilon to pilon.fasta [pilon] Writing NODE_7273_length_456_cov_10.674627:1-456 changes to pilon.changes [pilon] Writing updated NODE_7273_length_456_cov_10.674627_pilon to pilon.fasta [pilon] Writing NODE_7274_length_456_cov_9.313433:1-456 changes to pilon.changes [pilon] Writing updated NODE_7274_length_456_cov_9.313433_pilon to pilon.fasta [pilon] Writing NODE_7275_length_456_cov_7.364179:1-456 changes to pilon.changes [pilon] Writing updated NODE_7275_length_456_cov_7.364179_pilon to pilon.fasta [pilon] Writing NODE_7276_length_456_cov_2.761194:1-456 changes to pilon.changes [pilon] Writing updated NODE_7276_length_456_cov_2.761194_pilon to pilon.fasta [pilon] Writing NODE_7277_length_456_cov_1.220896:1-456 changes to pilon.changes [pilon] Writing updated NODE_7277_length_456_cov_1.220896_pilon to pilon.fasta [pilon] Writing NODE_7278_length_456_cov_1.140299:1-456 changes to pilon.changes [pilon] Writing updated NODE_7278_length_456_cov_1.140299_pilon to pilon.fasta [pilon] Writing NODE_7279_length_456_cov_1.128358:1-456 changes to pilon.changes [pilon] Writing updated NODE_7279_length_456_cov_1.128358_pilon to pilon.fasta [pilon] Writing NODE_7280_length_456_cov_0.800000:1-456 changes to pilon.changes [pilon] Writing updated NODE_7280_length_456_cov_0.800000_pilon to pilon.fasta [pilon] Writing NODE_7281_length_455_cov_33.745509:1-455 changes to pilon.changes [pilon] Writing updated NODE_7281_length_455_cov_33.745509_pilon to pilon.fasta [pilon] Writing NODE_7282_length_455_cov_31.871257:1-455 changes to pilon.changes [pilon] Writing updated NODE_7282_length_455_cov_31.871257_pilon to pilon.fasta [pilon] Writing NODE_7283_length_455_cov_24.622754:1-455 changes to pilon.changes [pilon] Writing updated NODE_7283_length_455_cov_24.622754_pilon to pilon.fasta [pilon] Writing NODE_7284_length_455_cov_22.200599:1-455 changes to pilon.changes [pilon] Writing updated NODE_7284_length_455_cov_22.200599_pilon to pilon.fasta [pilon] Writing NODE_7285_length_455_cov_18.032934:1-455 changes to pilon.changes [pilon] Writing updated NODE_7285_length_455_cov_18.032934_pilon to pilon.fasta [pilon] Writing NODE_7286_length_455_cov_16.664671:1-455 changes to pilon.changes [pilon] Writing updated NODE_7286_length_455_cov_16.664671_pilon to pilon.fasta [pilon] Writing NODE_7287_length_455_cov_12.553892:1-455 changes to pilon.changes [pilon] Writing updated NODE_7287_length_455_cov_12.553892_pilon to pilon.fasta [pilon] Writing NODE_7288_length_455_cov_11.796407:1-455 changes to pilon.changes [pilon] Writing updated NODE_7288_length_455_cov_11.796407_pilon to pilon.fasta [pilon] Writing NODE_7289_length_455_cov_11.508982:1-455 changes to pilon.changes [pilon] Writing updated NODE_7289_length_455_cov_11.508982_pilon to pilon.fasta [pilon] Writing NODE_7290_length_455_cov_5.832335:1-455 changes to pilon.changes [pilon] Writing updated NODE_7290_length_455_cov_5.832335_pilon to pilon.fasta [pilon] Writing NODE_7291_length_455_cov_2.724551:1-455 changes to pilon.changes [pilon] Writing updated NODE_7291_length_455_cov_2.724551_pilon to pilon.fasta [pilon] Writing NODE_7292_length_455_cov_0.664671:1-455 changes to pilon.changes [pilon] Writing updated NODE_7292_length_455_cov_0.664671_pilon to pilon.fasta [pilon] Writing NODE_7293_length_454_cov_77.090090:1-454 changes to pilon.changes [pilon] Writing updated NODE_7293_length_454_cov_77.090090_pilon to pilon.fasta [pilon] Writing NODE_7294_length_454_cov_20.234234:1-454 changes to pilon.changes [pilon] Writing updated NODE_7294_length_454_cov_20.234234_pilon to pilon.fasta [pilon] Writing NODE_7295_length_454_cov_18.798799:1-454 changes to pilon.changes [pilon] Writing updated NODE_7295_length_454_cov_18.798799_pilon to pilon.fasta [pilon] Writing NODE_7296_length_454_cov_16.000000:1-454 changes to pilon.changes [pilon] Writing updated NODE_7296_length_454_cov_16.000000_pilon to pilon.fasta [pilon] Writing NODE_7297_length_454_cov_14.069069:1-454 changes to pilon.changes [pilon] Writing updated NODE_7297_length_454_cov_14.069069_pilon to pilon.fasta [pilon] Writing NODE_7298_length_454_cov_13.072072:1-454 changes to pilon.changes [pilon] Writing updated NODE_7298_length_454_cov_13.072072_pilon to pilon.fasta [pilon] Writing NODE_7299_length_454_cov_3.426426:1-454 changes to pilon.changes [pilon] Writing updated NODE_7299_length_454_cov_3.426426_pilon to pilon.fasta [pilon] Writing NODE_7300_length_454_cov_3.270270:1-454 changes to pilon.changes [pilon] Writing updated NODE_7300_length_454_cov_3.270270_pilon to pilon.fasta [pilon] Writing NODE_7301_length_454_cov_2.786787:1-454 changes to pilon.changes [pilon] Writing updated NODE_7301_length_454_cov_2.786787_pilon to pilon.fasta [pilon] Writing NODE_7302_length_454_cov_2.702703:1-454 changes to pilon.changes [pilon] Writing updated NODE_7302_length_454_cov_2.702703_pilon to pilon.fasta [pilon] Writing NODE_7303_length_454_cov_2.228228:1-454 changes to pilon.changes [pilon] Writing updated NODE_7303_length_454_cov_2.228228_pilon to pilon.fasta [pilon] Writing NODE_7304_length_454_cov_1.627628:1-454 changes to pilon.changes [pilon] Writing updated NODE_7304_length_454_cov_1.627628_pilon to pilon.fasta [pilon] Writing NODE_7305_length_454_cov_1.507508:1-454 changes to pilon.changes [pilon] Writing updated NODE_7305_length_454_cov_1.507508_pilon to pilon.fasta [pilon] Writing NODE_7306_length_453_cov_43.701807:1-453 changes to pilon.changes [pilon] Writing updated NODE_7306_length_453_cov_43.701807_pilon to pilon.fasta [pilon] Writing NODE_7307_length_453_cov_28.620482:1-453 changes to pilon.changes [pilon] Writing updated NODE_7307_length_453_cov_28.620482_pilon to pilon.fasta [pilon] Writing NODE_7308_length_453_cov_19.936747:1-453 changes to pilon.changes [pilon] Writing updated NODE_7308_length_453_cov_19.936747_pilon to pilon.fasta [pilon] Writing NODE_7309_length_453_cov_11.033133:1-453 changes to pilon.changes [pilon] Writing updated NODE_7309_length_453_cov_11.033133_pilon to pilon.fasta [pilon] Writing NODE_7310_length_453_cov_2.984940:1-453 changes to pilon.changes [pilon] Writing updated NODE_7310_length_453_cov_2.984940_pilon to pilon.fasta [pilon] Writing NODE_7311_length_453_cov_2.066265:1-453 changes to pilon.changes [pilon] Writing updated NODE_7311_length_453_cov_2.066265_pilon to pilon.fasta [pilon] Writing NODE_7312_length_453_cov_1.036145:1-453 changes to pilon.changes [pilon] Writing updated NODE_7312_length_453_cov_1.036145_pilon to pilon.fasta [pilon] Writing NODE_7313_length_453_cov_0.978916:1-453 changes to pilon.changes [pilon] Writing updated NODE_7313_length_453_cov_0.978916_pilon to pilon.fasta [pilon] Writing NODE_7314_length_453_cov_0.969880:1-453 changes to pilon.changes [pilon] Writing updated NODE_7314_length_453_cov_0.969880_pilon to pilon.fasta [pilon] Writing NODE_7315_length_452_cov_50.380665:1-452 changes to pilon.changes [pilon] Writing updated NODE_7315_length_452_cov_50.380665_pilon to pilon.fasta [pilon] Writing NODE_7316_length_452_cov_46.652568:1-452 changes to pilon.changes [pilon] Writing updated NODE_7316_length_452_cov_46.652568_pilon to pilon.fasta [pilon] Writing NODE_7317_length_452_cov_38.489426:1-452 changes to pilon.changes [pilon] Writing updated NODE_7317_length_452_cov_38.489426_pilon to pilon.fasta [pilon] Writing NODE_7318_length_452_cov_35.202417:1-452 changes to pilon.changes [pilon] Writing updated NODE_7318_length_452_cov_35.202417_pilon to pilon.fasta [pilon] Writing NODE_7319_length_452_cov_29.459215:1-452 changes to pilon.changes [pilon] Writing updated NODE_7319_length_452_cov_29.459215_pilon to pilon.fasta [pilon] Writing NODE_7320_length_452_cov_26.344411:1-452 changes to pilon.changes [pilon] Writing updated NODE_7320_length_452_cov_26.344411_pilon to pilon.fasta [pilon] Writing NODE_7321_length_452_cov_21.193353:1-452 changes to pilon.changes [pilon] Writing updated NODE_7321_length_452_cov_21.193353_pilon to pilon.fasta [pilon] Writing NODE_7322_length_452_cov_16.691843:1-452 changes to pilon.changes [pilon] Writing updated NODE_7322_length_452_cov_16.691843_pilon to pilon.fasta [pilon] Writing NODE_7323_length_452_cov_14.921450:1-452 changes to pilon.changes [pilon] Writing updated NODE_7323_length_452_cov_14.921450_pilon to pilon.fasta [pilon] Writing NODE_7324_length_452_cov_13.706949:1-452 changes to pilon.changes [pilon] Writing updated NODE_7324_length_452_cov_13.706949_pilon to pilon.fasta [pilon] Writing NODE_7325_length_452_cov_13.664653:1-452 changes to pilon.changes [pilon] Writing updated NODE_7325_length_452_cov_13.664653_pilon to pilon.fasta [pilon] Writing NODE_7326_length_452_cov_13.268882:1-452 changes to pilon.changes [pilon] Writing updated NODE_7326_length_452_cov_13.268882_pilon to pilon.fasta [pilon] Writing NODE_7327_length_452_cov_11.564955:1-452 changes to pilon.changes [pilon] Writing updated NODE_7327_length_452_cov_11.564955_pilon to pilon.fasta [pilon] Writing NODE_7328_length_452_cov_1.543807:1-452 changes to pilon.changes [pilon] Writing updated NODE_7328_length_452_cov_1.543807_pilon to pilon.fasta [pilon] Writing NODE_7329_length_452_cov_1.350453:1-452 changes to pilon.changes [pilon] Writing updated NODE_7329_length_452_cov_1.350453_pilon to pilon.fasta [pilon] Writing NODE_7330_length_452_cov_0.891239:1-452 changes to pilon.changes [pilon] Writing updated NODE_7330_length_452_cov_0.891239_pilon to pilon.fasta [pilon] Writing NODE_7331_length_452_cov_0.676737:1-452 changes to pilon.changes [pilon] Writing updated NODE_7331_length_452_cov_0.676737_pilon to pilon.fasta [pilon] Writing NODE_7332_length_452_cov_0.673716:1-452 changes to pilon.changes [pilon] Writing updated NODE_7332_length_452_cov_0.673716_pilon to pilon.fasta [pilon] Writing NODE_7333_length_452_cov_0.649547:1-452 changes to pilon.changes [pilon] Writing updated NODE_7333_length_452_cov_0.649547_pilon to pilon.fasta [pilon] Writing NODE_7334_length_451_cov_43.930303:1-451 changes to pilon.changes [pilon] Writing updated NODE_7334_length_451_cov_43.930303_pilon to pilon.fasta [pilon] Writing NODE_7335_length_451_cov_40.796970:1-451 changes to pilon.changes [pilon] Writing updated NODE_7335_length_451_cov_40.796970_pilon to pilon.fasta [pilon] Writing NODE_7336_length_451_cov_33.500000:1-451 changes to pilon.changes [pilon] Writing updated NODE_7336_length_451_cov_33.500000_pilon to pilon.fasta [pilon] Writing NODE_7337_length_451_cov_28.548485:1-451 changes to pilon.changes [pilon] Writing updated NODE_7337_length_451_cov_28.548485_pilon to pilon.fasta [pilon] Writing NODE_7338_length_451_cov_25.518182:1-451 changes to pilon.changes [pilon] Writing updated NODE_7338_length_451_cov_25.518182_pilon to pilon.fasta [pilon] Writing NODE_7339_length_451_cov_20.445455:1-451 changes to pilon.changes [pilon] Writing updated NODE_7339_length_451_cov_20.445455_pilon to pilon.fasta [pilon] Writing NODE_7340_length_451_cov_16.181818:1-451 changes to pilon.changes [pilon] Writing updated NODE_7340_length_451_cov_16.181818_pilon to pilon.fasta [pilon] Writing NODE_7341_length_451_cov_14.445455:1-451 changes to pilon.changes [pilon] Writing updated NODE_7341_length_451_cov_14.445455_pilon to pilon.fasta [pilon] Writing NODE_7342_length_451_cov_12.172727:1-451 changes to pilon.changes [pilon] Writing updated NODE_7342_length_451_cov_12.172727_pilon to pilon.fasta [pilon] Writing NODE_7343_length_451_cov_10.781818:1-451 changes to pilon.changes [pilon] Writing updated NODE_7343_length_451_cov_10.781818_pilon to pilon.fasta [pilon] Writing NODE_7344_length_451_cov_1.633333:1-451 changes to pilon.changes [pilon] Writing updated NODE_7344_length_451_cov_1.633333_pilon to pilon.fasta [pilon] Writing NODE_7345_length_451_cov_1.327273:1-451 changes to pilon.changes [pilon] Writing updated NODE_7345_length_451_cov_1.327273_pilon to pilon.fasta [pilon] Writing NODE_7346_length_450_cov_75.006079:1-450 changes to pilon.changes [pilon] Writing updated NODE_7346_length_450_cov_75.006079_pilon to pilon.fasta [pilon] Writing NODE_7347_length_450_cov_34.525836:1-450 changes to pilon.changes [pilon] Writing updated NODE_7347_length_450_cov_34.525836_pilon to pilon.fasta [pilon] Writing NODE_7348_length_450_cov_32.091185:1-450 changes to pilon.changes [pilon] Writing updated NODE_7348_length_450_cov_32.091185_pilon to pilon.fasta [pilon] Writing NODE_7349_length_450_cov_30.382979:1-450 changes to pilon.changes [pilon] Writing updated NODE_7349_length_450_cov_30.382979_pilon to pilon.fasta [pilon] Writing NODE_7350_length_450_cov_28.112462:1-450 changes to pilon.changes [pilon] Writing updated NODE_7350_length_450_cov_28.112462_pilon to pilon.fasta [pilon] Writing NODE_7351_length_450_cov_25.699088:1-450 changes to pilon.changes [pilon] Writing updated NODE_7351_length_450_cov_25.699088_pilon to pilon.fasta [pilon] Writing NODE_7352_length_450_cov_23.987842:1-450 changes to pilon.changes [pilon] Writing updated NODE_7352_length_450_cov_23.987842_pilon to pilon.fasta [pilon] Writing NODE_7353_length_450_cov_23.164134:1-450 changes to pilon.changes [pilon] Writing updated NODE_7353_length_450_cov_23.164134_pilon to pilon.fasta [pilon] Writing NODE_7354_length_450_cov_21.170213:1-450 changes to pilon.changes [pilon] Writing updated NODE_7354_length_450_cov_21.170213_pilon to pilon.fasta [pilon] Writing NODE_7355_length_450_cov_19.617021:1-450 changes to pilon.changes [pilon] Writing updated NODE_7355_length_450_cov_19.617021_pilon to pilon.fasta [pilon] Writing NODE_7356_length_450_cov_18.513678:1-450 changes to pilon.changes [pilon] Writing updated NODE_7356_length_450_cov_18.513678_pilon to pilon.fasta [pilon] Writing NODE_7357_length_450_cov_17.957447:1-450 changes to pilon.changes [pilon] Writing updated NODE_7357_length_450_cov_17.957447_pilon to pilon.fasta [pilon] Writing NODE_7358_length_450_cov_17.173252:1-450 changes to pilon.changes [pilon] Writing updated NODE_7358_length_450_cov_17.173252_pilon to pilon.fasta [pilon] Writing NODE_7359_length_450_cov_16.832827:1-450 changes to pilon.changes [pilon] Writing updated NODE_7359_length_450_cov_16.832827_pilon to pilon.fasta [pilon] Writing NODE_7360_length_450_cov_16.714286:1-450 changes to pilon.changes [pilon] Writing updated NODE_7360_length_450_cov_16.714286_pilon to pilon.fasta [pilon] Writing NODE_7361_length_450_cov_16.680851:1-450 changes to pilon.changes [pilon] Writing updated NODE_7361_length_450_cov_16.680851_pilon to pilon.fasta [pilon] Writing NODE_7362_length_450_cov_16.650456:1-450 changes to pilon.changes [pilon] Writing updated NODE_7362_length_450_cov_16.650456_pilon to pilon.fasta [pilon] Writing NODE_7363_length_450_cov_15.738602:1-450 changes to pilon.changes [pilon] Writing updated NODE_7363_length_450_cov_15.738602_pilon to pilon.fasta [pilon] Writing NODE_7364_length_450_cov_15.258359:1-450 changes to pilon.changes [pilon] Writing updated NODE_7364_length_450_cov_15.258359_pilon to pilon.fasta [pilon] Writing NODE_7365_length_450_cov_14.133739:1-450 changes to pilon.changes [pilon] Writing updated NODE_7365_length_450_cov_14.133739_pilon to pilon.fasta [pilon] Writing NODE_7366_length_450_cov_13.683891:1-450 changes to pilon.changes [pilon] Writing updated NODE_7366_length_450_cov_13.683891_pilon to pilon.fasta [pilon] Writing NODE_7367_length_450_cov_13.407295:1-450 changes to pilon.changes [pilon] Writing updated NODE_7367_length_450_cov_13.407295_pilon to pilon.fasta [pilon] Writing NODE_7368_length_450_cov_13.027356:1-450 changes to pilon.changes [pilon] Writing updated NODE_7368_length_450_cov_13.027356_pilon to pilon.fasta [pilon] Writing NODE_7369_length_450_cov_12.711246:1-450 changes to pilon.changes [pilon] Writing updated NODE_7369_length_450_cov_12.711246_pilon to pilon.fasta [pilon] Writing NODE_7370_length_450_cov_12.030395:1-450 changes to pilon.changes [pilon] Writing updated NODE_7370_length_450_cov_12.030395_pilon to pilon.fasta [pilon] Writing NODE_7371_length_450_cov_9.155015:1-450 changes to pilon.changes [pilon] Writing updated NODE_7371_length_450_cov_9.155015_pilon to pilon.fasta [pilon] Writing NODE_7372_length_450_cov_8.398176:1-450 changes to pilon.changes [pilon] Writing updated NODE_7372_length_450_cov_8.398176_pilon to pilon.fasta [pilon] Writing NODE_7373_length_450_cov_8.218845:1-450 changes to pilon.changes [pilon] Writing updated NODE_7373_length_450_cov_8.218845_pilon to pilon.fasta [pilon] Writing NODE_7374_length_450_cov_2.276596:1-450 changes to pilon.changes [pilon] Writing updated NODE_7374_length_450_cov_2.276596_pilon to pilon.fasta [pilon] Writing NODE_7375_length_450_cov_1.872340:1-450 changes to pilon.changes [pilon] Writing updated NODE_7375_length_450_cov_1.872340_pilon to pilon.fasta [pilon] Writing NODE_7376_length_450_cov_1.820669:1-450 changes to pilon.changes [pilon] Writing updated NODE_7376_length_450_cov_1.820669_pilon to pilon.fasta [pilon] Writing NODE_7377_length_450_cov_0.708207:1-450 changes to pilon.changes [pilon] Writing updated NODE_7377_length_450_cov_0.708207_pilon to pilon.fasta [pilon] Writing NODE_7378_length_450_cov_0.583587:1-450 changes to pilon.changes [pilon] Writing updated NODE_7378_length_450_cov_0.583587_pilon to pilon.fasta [pilon] Writing NODE_7379_length_449_cov_37.170732:1-449 changes to pilon.changes [pilon] Writing updated NODE_7379_length_449_cov_37.170732_pilon to pilon.fasta [pilon] Writing NODE_7380_length_449_cov_28.228659:1-449 changes to pilon.changes [pilon] Writing updated NODE_7380_length_449_cov_28.228659_pilon to pilon.fasta [pilon] Writing NODE_7381_length_449_cov_24.527439:1-449 changes to pilon.changes [pilon] Writing updated NODE_7381_length_449_cov_24.527439_pilon to pilon.fasta [pilon] Writing NODE_7382_length_449_cov_20.847561:1-449 changes to pilon.changes [pilon] Writing updated NODE_7382_length_449_cov_20.847561_pilon to pilon.fasta [pilon] Writing NODE_7383_length_449_cov_17.856707:1-449 changes to pilon.changes [pilon] Writing updated NODE_7383_length_449_cov_17.856707_pilon to pilon.fasta [pilon] Writing NODE_7384_length_449_cov_8.039634:1-449 changes to pilon.changes [pilon] Writing updated NODE_7384_length_449_cov_8.039634_pilon to pilon.fasta [pilon] Writing NODE_7385_length_449_cov_2.478659:1-449 changes to pilon.changes [pilon] Writing updated NODE_7385_length_449_cov_2.478659_pilon to pilon.fasta [pilon] Writing NODE_7386_length_449_cov_2.442073:1-449 changes to pilon.changes [pilon] Writing updated NODE_7386_length_449_cov_2.442073_pilon to pilon.fasta [pilon] Writing NODE_7387_length_449_cov_1.875000:1-449 changes to pilon.changes [pilon] Writing updated NODE_7387_length_449_cov_1.875000_pilon to pilon.fasta [pilon] Writing NODE_7388_length_449_cov_1.838415:1-449 changes to pilon.changes [pilon] Writing updated NODE_7388_length_449_cov_1.838415_pilon to pilon.fasta [pilon] Writing NODE_7389_length_449_cov_1.442073:1-449 changes to pilon.changes [pilon] Writing updated NODE_7389_length_449_cov_1.442073_pilon to pilon.fasta [pilon] Writing NODE_7390_length_449_cov_1.128049:1-449 changes to pilon.changes [pilon] Writing updated NODE_7390_length_449_cov_1.128049_pilon to pilon.fasta [pilon] Writing NODE_7391_length_449_cov_1.073171:1-449 changes to pilon.changes [pilon] Writing updated NODE_7391_length_449_cov_1.073171_pilon to pilon.fasta [pilon] Writing NODE_7392_length_449_cov_0.786585:1-449 changes to pilon.changes [pilon] Writing updated NODE_7392_length_449_cov_0.786585_pilon to pilon.fasta [pilon] Writing NODE_7393_length_449_cov_0.618902:1-449 changes to pilon.changes [pilon] Writing updated NODE_7393_length_449_cov_0.618902_pilon to pilon.fasta [pilon] Writing NODE_7394_length_448_cov_68.446483:1-448 changes to pilon.changes [pilon] Writing updated NODE_7394_length_448_cov_68.446483_pilon to pilon.fasta [pilon] Writing NODE_7395_length_448_cov_52.134557:1-448 changes to pilon.changes [pilon] Writing updated NODE_7395_length_448_cov_52.134557_pilon to pilon.fasta [pilon] Writing NODE_7396_length_448_cov_27.776758:1-448 changes to pilon.changes [pilon] Writing updated NODE_7396_length_448_cov_27.776758_pilon to pilon.fasta [pilon] Writing NODE_7397_length_448_cov_18.406728:1-448 changes to pilon.changes [pilon] Writing updated NODE_7397_length_448_cov_18.406728_pilon to pilon.fasta [pilon] Writing NODE_7398_length_448_cov_14.314985:1-448 changes to pilon.changes [pilon] Writing updated NODE_7398_length_448_cov_14.314985_pilon to pilon.fasta [pilon] Writing NODE_7399_length_448_cov_11.639144:1-448 changes to pilon.changes [pilon] Writing updated NODE_7399_length_448_cov_11.639144_pilon to pilon.fasta [pilon] Writing NODE_7400_length_448_cov_9.737003:1-448 changes to pilon.changes [pilon] Writing updated NODE_7400_length_448_cov_9.737003_pilon to pilon.fasta [pilon] Writing NODE_7401_length_448_cov_8.840979:1-448 changes to pilon.changes [pilon] Writing updated NODE_7401_length_448_cov_8.840979_pilon to pilon.fasta [pilon] Writing NODE_7402_length_448_cov_8.629969:1-448 changes to pilon.changes [pilon] Writing updated NODE_7402_length_448_cov_8.629969_pilon to pilon.fasta [pilon] Writing NODE_7403_length_448_cov_1.324159:1-448 changes to pilon.changes [pilon] Writing updated NODE_7403_length_448_cov_1.324159_pilon to pilon.fasta [pilon] Writing NODE_7404_length_448_cov_1.033639:1-448 changes to pilon.changes [pilon] Writing updated NODE_7404_length_448_cov_1.033639_pilon to pilon.fasta [pilon] Writing NODE_7405_length_448_cov_0.984709:1-448 changes to pilon.changes [pilon] Writing updated NODE_7405_length_448_cov_0.984709_pilon to pilon.fasta [pilon] Writing NODE_7406_length_448_cov_0.779817:1-448 changes to pilon.changes [pilon] Writing updated NODE_7406_length_448_cov_0.779817_pilon to pilon.fasta [pilon] Writing NODE_7407_length_447_cov_487.616564:1-447 changes to pilon.changes [pilon] Writing updated NODE_7407_length_447_cov_487.616564_pilon to pilon.fasta [pilon] Writing NODE_7408_length_447_cov_32.162577:1-447 changes to pilon.changes [pilon] Writing updated NODE_7408_length_447_cov_32.162577_pilon to pilon.fasta [pilon] Writing NODE_7409_length_447_cov_31.730061:1-447 changes to pilon.changes [pilon] Writing updated NODE_7409_length_447_cov_31.730061_pilon to pilon.fasta [pilon] Writing NODE_7410_length_447_cov_27.840491:1-447 changes to pilon.changes [pilon] Writing updated NODE_7410_length_447_cov_27.840491_pilon to pilon.fasta [pilon] Writing NODE_7411_length_447_cov_27.211656:1-447 changes to pilon.changes [pilon] Writing updated NODE_7411_length_447_cov_27.211656_pilon to pilon.fasta [pilon] Writing NODE_7412_length_447_cov_25.395706:1-447 changes to pilon.changes [pilon] Writing updated NODE_7412_length_447_cov_25.395706_pilon to pilon.fasta [pilon] Writing NODE_7413_length_447_cov_24.579755:1-447 changes to pilon.changes [pilon] Writing updated NODE_7413_length_447_cov_24.579755_pilon to pilon.fasta [pilon] Writing NODE_7414_length_447_cov_20.524540:1-447 changes to pilon.changes [pilon] Writing updated NODE_7414_length_447_cov_20.524540_pilon to pilon.fasta [pilon] Writing NODE_7415_length_447_cov_19.656442:1-447 changes to pilon.changes [pilon] Writing updated NODE_7415_length_447_cov_19.656442_pilon to pilon.fasta [pilon] Writing NODE_7416_length_447_cov_18.981595:1-447 changes to pilon.changes [pilon] Writing updated NODE_7416_length_447_cov_18.981595_pilon to pilon.fasta [pilon] Writing NODE_7417_length_447_cov_16.849693:1-447 changes to pilon.changes [pilon] Writing updated NODE_7417_length_447_cov_16.849693_pilon to pilon.fasta [pilon] Writing NODE_7418_length_447_cov_16.533742:1-447 changes to pilon.changes [pilon] Writing updated NODE_7418_length_447_cov_16.533742_pilon to pilon.fasta [pilon] Writing NODE_7419_length_447_cov_11.150307:1-447 changes to pilon.changes [pilon] Writing updated NODE_7419_length_447_cov_11.150307_pilon to pilon.fasta [pilon] Writing NODE_7420_length_447_cov_10.889571:1-447 changes to pilon.changes [pilon] Writing updated NODE_7420_length_447_cov_10.889571_pilon to pilon.fasta [pilon] Writing NODE_7421_length_447_cov_10.687117:1-447 changes to pilon.changes [pilon] Writing updated NODE_7421_length_447_cov_10.687117_pilon to pilon.fasta [pilon] Writing NODE_7422_length_447_cov_8.601227:1-447 changes to pilon.changes [pilon] Writing updated NODE_7422_length_447_cov_8.601227_pilon to pilon.fasta [pilon] Writing NODE_7423_length_447_cov_8.503067:1-447 changes to pilon.changes [pilon] Writing updated NODE_7423_length_447_cov_8.503067_pilon to pilon.fasta [pilon] Writing NODE_7424_length_447_cov_3.631902:1-447 changes to pilon.changes [pilon] Writing updated NODE_7424_length_447_cov_3.631902_pilon to pilon.fasta [pilon] Writing NODE_7425_length_447_cov_2.917178:1-447 changes to pilon.changes [pilon] Writing updated NODE_7425_length_447_cov_2.917178_pilon to pilon.fasta [pilon] Writing NODE_7426_length_447_cov_2.631902:1-447 changes to pilon.changes [pilon] Writing updated NODE_7426_length_447_cov_2.631902_pilon to pilon.fasta [pilon] Writing NODE_7427_length_447_cov_2.444785:1-447 changes to pilon.changes [pilon] Writing updated NODE_7427_length_447_cov_2.444785_pilon to pilon.fasta [pilon] Writing NODE_7428_length_447_cov_2.355828:1-447 changes to pilon.changes [pilon] Writing updated NODE_7428_length_447_cov_2.355828_pilon to pilon.fasta [pilon] Writing NODE_7429_length_447_cov_2.193252:1-447 changes to pilon.changes [pilon] Writing updated NODE_7429_length_447_cov_2.193252_pilon to pilon.fasta [pilon] Writing NODE_7430_length_447_cov_1.960123:1-447 changes to pilon.changes [pilon] Writing updated NODE_7430_length_447_cov_1.960123_pilon to pilon.fasta [pilon] Writing NODE_7431_length_447_cov_1.352761:1-447 changes to pilon.changes [pilon] Writing updated NODE_7431_length_447_cov_1.352761_pilon to pilon.fasta [pilon] Writing NODE_7432_length_447_cov_0.858896:1-447 changes to pilon.changes [pilon] Writing updated NODE_7432_length_447_cov_0.858896_pilon to pilon.fasta [pilon] Writing NODE_7433_length_446_cov_69.929231:1-446 changes to pilon.changes [pilon] Writing updated NODE_7433_length_446_cov_69.929231_pilon to pilon.fasta [pilon] Writing NODE_7434_length_446_cov_61.261538:1-446 changes to pilon.changes [pilon] Writing updated NODE_7434_length_446_cov_61.261538_pilon to pilon.fasta [pilon] Writing NODE_7435_length_446_cov_50.316923:1-446 changes to pilon.changes [pilon] Writing updated NODE_7435_length_446_cov_50.316923_pilon to pilon.fasta [pilon] Writing NODE_7436_length_446_cov_46.950769:1-446 changes to pilon.changes [pilon] Writing updated NODE_7436_length_446_cov_46.950769_pilon to pilon.fasta [pilon] Writing NODE_7437_length_446_cov_41.581538:1-446 changes to pilon.changes [pilon] Writing updated NODE_7437_length_446_cov_41.581538_pilon to pilon.fasta [pilon] Writing NODE_7438_length_446_cov_38.030769:1-446 changes to pilon.changes [pilon] Writing updated NODE_7438_length_446_cov_38.030769_pilon to pilon.fasta [pilon] Writing NODE_7439_length_446_cov_29.433846:1-446 changes to pilon.changes [pilon] Writing updated NODE_7439_length_446_cov_29.433846_pilon to pilon.fasta [pilon] Writing NODE_7440_length_446_cov_28.332308:1-446 changes to pilon.changes [pilon] Writing updated NODE_7440_length_446_cov_28.332308_pilon to pilon.fasta [pilon] Writing NODE_7441_length_446_cov_23.843077:1-446 changes to pilon.changes [pilon] Writing updated NODE_7441_length_446_cov_23.843077_pilon to pilon.fasta [pilon] Writing NODE_7442_length_446_cov_22.289231:1-446 changes to pilon.changes [pilon] Writing updated NODE_7442_length_446_cov_22.289231_pilon to pilon.fasta [pilon] Writing NODE_7443_length_446_cov_20.830769:1-446 changes to pilon.changes [pilon] Writing updated NODE_7443_length_446_cov_20.830769_pilon to pilon.fasta [pilon] Writing NODE_7444_length_446_cov_16.772308:1-446 changes to pilon.changes [pilon] Writing updated NODE_7444_length_446_cov_16.772308_pilon to pilon.fasta [pilon] Writing NODE_7445_length_446_cov_16.200000:1-446 changes to pilon.changes [pilon] Writing updated NODE_7445_length_446_cov_16.200000_pilon to pilon.fasta [pilon] Writing NODE_7446_length_446_cov_15.990769:1-446 changes to pilon.changes [pilon] Writing updated NODE_7446_length_446_cov_15.990769_pilon to pilon.fasta [pilon] Writing NODE_7447_length_446_cov_14.729231:1-446 changes to pilon.changes [pilon] Writing updated NODE_7447_length_446_cov_14.729231_pilon to pilon.fasta [pilon] Writing NODE_7448_length_446_cov_13.507692:1-446 changes to pilon.changes [pilon] Writing updated NODE_7448_length_446_cov_13.507692_pilon to pilon.fasta [pilon] Writing NODE_7449_length_446_cov_3.258462:1-446 changes to pilon.changes [pilon] Writing updated NODE_7449_length_446_cov_3.258462_pilon to pilon.fasta [pilon] Writing NODE_7450_length_446_cov_1.504615:1-446 changes to pilon.changes [pilon] Writing updated NODE_7450_length_446_cov_1.504615_pilon to pilon.fasta [pilon] Writing NODE_7451_length_446_cov_1.424615:1-446 changes to pilon.changes [pilon] Writing updated NODE_7451_length_446_cov_1.424615_pilon to pilon.fasta [pilon] Writing NODE_7452_length_446_cov_1.353846:1-446 changes to pilon.changes [pilon] Writing updated NODE_7452_length_446_cov_1.353846_pilon to pilon.fasta [pilon] Writing NODE_7453_length_446_cov_1.338462:1-446 changes to pilon.changes [pilon] Writing updated NODE_7453_length_446_cov_1.338462_pilon to pilon.fasta [pilon] Writing NODE_7454_length_446_cov_1.301538:1-446 changes to pilon.changes [pilon] Writing updated NODE_7454_length_446_cov_1.301538_pilon to pilon.fasta [pilon] Writing NODE_7455_length_446_cov_0.750769:1-446 changes to pilon.changes [pilon] Writing updated NODE_7455_length_446_cov_0.750769_pilon to pilon.fasta [pilon] Writing NODE_7456_length_446_cov_0.723077:1-446 changes to pilon.changes [pilon] Writing updated NODE_7456_length_446_cov_0.723077_pilon to pilon.fasta [pilon] Writing NODE_7457_length_445_cov_47.317901:1-445 changes to pilon.changes [pilon] Writing updated NODE_7457_length_445_cov_47.317901_pilon to pilon.fasta [pilon] Writing NODE_7458_length_445_cov_39.283951:1-445 changes to pilon.changes [pilon] Writing updated NODE_7458_length_445_cov_39.283951_pilon to pilon.fasta [pilon] Writing NODE_7459_length_445_cov_21.111111:1-445 changes to pilon.changes [pilon] Writing updated NODE_7459_length_445_cov_21.111111_pilon to pilon.fasta [pilon] Writing NODE_7460_length_445_cov_18.793210:1-445 changes to pilon.changes [pilon] Writing updated NODE_7460_length_445_cov_18.793210_pilon to pilon.fasta [pilon] Writing NODE_7461_length_445_cov_7.712963:1-445 changes to pilon.changes [pilon] Writing updated NODE_7461_length_445_cov_7.712963_pilon to pilon.fasta [pilon] Writing NODE_7462_length_445_cov_6.250000:1-445 changes to pilon.changes [pilon] Writing updated NODE_7462_length_445_cov_6.250000_pilon to pilon.fasta [pilon] Writing NODE_7463_length_445_cov_3.425926:1-445 changes to pilon.changes [pilon] Writing updated NODE_7463_length_445_cov_3.425926_pilon to pilon.fasta [pilon] Writing NODE_7464_length_445_cov_1.481481:1-445 changes to pilon.changes [pilon] Writing updated NODE_7464_length_445_cov_1.481481_pilon to pilon.fasta [pilon] Writing NODE_7465_length_445_cov_1.259259:1-445 changes to pilon.changes [pilon] Writing updated NODE_7465_length_445_cov_1.259259_pilon to pilon.fasta [pilon] Writing NODE_7466_length_445_cov_1.145062:1-445 changes to pilon.changes [pilon] Writing updated NODE_7466_length_445_cov_1.145062_pilon to pilon.fasta [pilon] Writing NODE_7467_length_445_cov_0.765432:1-445 changes to pilon.changes [pilon] Writing updated NODE_7467_length_445_cov_0.765432_pilon to pilon.fasta [pilon] Writing NODE_7468_length_444_cov_29.510836:1-444 changes to pilon.changes [pilon] Writing updated NODE_7468_length_444_cov_29.510836_pilon to pilon.fasta [pilon] Writing NODE_7469_length_444_cov_28.142415:1-444 changes to pilon.changes [pilon] Writing updated NODE_7469_length_444_cov_28.142415_pilon to pilon.fasta [pilon] Writing NODE_7470_length_444_cov_24.513932:1-444 changes to pilon.changes [pilon] Writing updated NODE_7470_length_444_cov_24.513932_pilon to pilon.fasta [pilon] Writing NODE_7471_length_444_cov_23.368421:1-444 changes to pilon.changes [pilon] Writing updated NODE_7471_length_444_cov_23.368421_pilon to pilon.fasta [pilon] Writing NODE_7472_length_444_cov_22.894737:1-444 changes to pilon.changes [pilon] Writing updated NODE_7472_length_444_cov_22.894737_pilon to pilon.fasta [pilon] Writing NODE_7473_length_444_cov_21.941176:1-444 changes to pilon.changes [pilon] Writing updated NODE_7473_length_444_cov_21.941176_pilon to pilon.fasta [pilon] Writing NODE_7474_length_444_cov_21.114551:1-444 changes to pilon.changes [pilon] Writing updated NODE_7474_length_444_cov_21.114551_pilon to pilon.fasta [pilon] Writing NODE_7475_length_444_cov_18.693498:1-444 changes to pilon.changes [pilon] Writing updated NODE_7475_length_444_cov_18.693498_pilon to pilon.fasta [pilon] Writing NODE_7476_length_444_cov_18.396285:1-444 changes to pilon.changes [pilon] Writing updated NODE_7476_length_444_cov_18.396285_pilon to pilon.fasta [pilon] Writing NODE_7477_length_444_cov_17.876161:1-444 changes to pilon.changes [pilon] Writing updated NODE_7477_length_444_cov_17.876161_pilon to pilon.fasta [pilon] Writing NODE_7478_length_444_cov_17.204334:1-444 changes to pilon.changes [pilon] Writing updated NODE_7478_length_444_cov_17.204334_pilon to pilon.fasta [pilon] Writing NODE_7479_length_444_cov_15.904025:1-444 changes to pilon.changes [pilon] Writing updated NODE_7479_length_444_cov_15.904025_pilon to pilon.fasta [pilon] Writing NODE_7480_length_444_cov_15.448916:1-444 changes to pilon.changes [pilon] Writing updated NODE_7480_length_444_cov_15.448916_pilon to pilon.fasta [pilon] Writing NODE_7481_length_444_cov_14.037152:1-444 changes to pilon.changes [pilon] Writing updated NODE_7481_length_444_cov_14.037152_pilon to pilon.fasta [pilon] Writing NODE_7482_length_444_cov_12.631579:1-444 changes to pilon.changes [pilon] Writing updated NODE_7482_length_444_cov_12.631579_pilon to pilon.fasta [pilon] Writing NODE_7483_length_444_cov_11.829721:1-444 changes to pilon.changes [pilon] Writing updated NODE_7483_length_444_cov_11.829721_pilon to pilon.fasta [pilon] Writing NODE_7484_length_444_cov_3.043344:1-444 changes to pilon.changes [pilon] Writing updated NODE_7484_length_444_cov_3.043344_pilon to pilon.fasta [pilon] Writing NODE_7485_length_444_cov_1.665635:1-444 changes to pilon.changes [pilon] Writing updated NODE_7485_length_444_cov_1.665635_pilon to pilon.fasta [pilon] Writing NODE_7486_length_444_cov_1.532508:1-444 changes to pilon.changes [pilon] Writing updated NODE_7486_length_444_cov_1.532508_pilon to pilon.fasta [pilon] Writing NODE_7487_length_444_cov_1.464396:1-444 changes to pilon.changes [pilon] Writing updated NODE_7487_length_444_cov_1.464396_pilon to pilon.fasta [pilon] Writing NODE_7488_length_444_cov_1.315789:1-444 changes to pilon.changes [pilon] Writing updated NODE_7488_length_444_cov_1.315789_pilon to pilon.fasta [pilon] Writing NODE_7489_length_444_cov_1.291022:1-444 changes to pilon.changes [pilon] Writing updated NODE_7489_length_444_cov_1.291022_pilon to pilon.fasta [pilon] Writing NODE_7490_length_444_cov_0.448916:1-444 changes to pilon.changes [pilon] Writing updated NODE_7490_length_444_cov_0.448916_pilon to pilon.fasta [pilon] Writing NODE_7491_length_443_cov_73.055901:1-443 changes to pilon.changes [pilon] Writing updated NODE_7491_length_443_cov_73.055901_pilon to pilon.fasta [pilon] Writing NODE_7492_length_443_cov_47.987578:1-443 changes to pilon.changes [pilon] Writing updated NODE_7492_length_443_cov_47.987578_pilon to pilon.fasta [pilon] Writing NODE_7493_length_443_cov_43.093168:1-443 changes to pilon.changes [pilon] Writing updated NODE_7493_length_443_cov_43.093168_pilon to pilon.fasta [pilon] Writing NODE_7494_length_443_cov_41.403727:1-443 changes to pilon.changes [pilon] Writing updated NODE_7494_length_443_cov_41.403727_pilon to pilon.fasta [pilon] Writing NODE_7495_length_443_cov_31.121118:1-443 changes to pilon.changes [pilon] Writing updated NODE_7495_length_443_cov_31.121118_pilon to pilon.fasta [pilon] Writing NODE_7496_length_443_cov_23.375776:1-443 changes to pilon.changes [pilon] Writing updated NODE_7496_length_443_cov_23.375776_pilon to pilon.fasta [pilon] Writing NODE_7497_length_443_cov_21.096273:1-443 changes to pilon.changes [pilon] Writing updated NODE_7497_length_443_cov_21.096273_pilon to pilon.fasta [pilon] Writing NODE_7498_length_443_cov_16.804348:1-443 changes to pilon.changes [pilon] Writing updated NODE_7498_length_443_cov_16.804348_pilon to pilon.fasta [pilon] Writing NODE_7499_length_443_cov_15.934783:1-443 changes to pilon.changes [pilon] Writing updated NODE_7499_length_443_cov_15.934783_pilon to pilon.fasta [pilon] Writing NODE_7500_length_443_cov_15.754658:1-443 changes to pilon.changes [pilon] Writing updated NODE_7500_length_443_cov_15.754658_pilon to pilon.fasta [pilon] Writing NODE_7501_length_443_cov_15.658385:1-443 changes to pilon.changes [pilon] Writing updated NODE_7501_length_443_cov_15.658385_pilon to pilon.fasta [pilon] Writing NODE_7502_length_443_cov_13.208075:1-443 changes to pilon.changes [pilon] Writing updated NODE_7502_length_443_cov_13.208075_pilon to pilon.fasta [pilon] Writing NODE_7503_length_443_cov_2.947205:1-443 changes to pilon.changes [pilon] Writing updated NODE_7503_length_443_cov_2.947205_pilon to pilon.fasta [pilon] Writing NODE_7504_length_443_cov_2.201863:1-443 changes to pilon.changes [pilon] Writing updated NODE_7504_length_443_cov_2.201863_pilon to pilon.fasta [pilon] Writing NODE_7505_length_443_cov_1.819876:1-443 changes to pilon.changes [pilon] Writing updated NODE_7505_length_443_cov_1.819876_pilon to pilon.fasta [pilon] Writing NODE_7506_length_443_cov_1.534161:1-443 changes to pilon.changes [pilon] Writing updated NODE_7506_length_443_cov_1.534161_pilon to pilon.fasta [pilon] Writing NODE_7507_length_443_cov_1.267081:1-443 changes to pilon.changes [pilon] Writing updated NODE_7507_length_443_cov_1.267081_pilon to pilon.fasta [pilon] Writing NODE_7508_length_443_cov_1.204969:1-443 changes to pilon.changes [pilon] Writing updated NODE_7508_length_443_cov_1.204969_pilon to pilon.fasta [pilon] Writing NODE_7509_length_443_cov_0.940994:1-443 changes to pilon.changes [pilon] Writing updated NODE_7509_length_443_cov_0.940994_pilon to pilon.fasta [pilon] Writing NODE_7510_length_443_cov_0.813665:1-443 changes to pilon.changes [pilon] Writing updated NODE_7510_length_443_cov_0.813665_pilon to pilon.fasta [pilon] Writing NODE_7511_length_443_cov_0.726708:1-443 changes to pilon.changes [pilon] Writing updated NODE_7511_length_443_cov_0.726708_pilon to pilon.fasta [pilon] Writing NODE_7512_length_443_cov_0.344720:1-443 changes to pilon.changes [pilon] Writing updated NODE_7512_length_443_cov_0.344720_pilon to pilon.fasta [pilon] Writing NODE_7513_length_442_cov_64.750779:1-442 changes to pilon.changes [pilon] Writing updated NODE_7513_length_442_cov_64.750779_pilon to pilon.fasta [pilon] Writing NODE_7514_length_442_cov_40.146417:1-442 changes to pilon.changes [pilon] Writing updated NODE_7514_length_442_cov_40.146417_pilon to pilon.fasta [pilon] Writing NODE_7515_length_442_cov_37.548287:1-442 changes to pilon.changes [pilon] Writing updated NODE_7515_length_442_cov_37.548287_pilon to pilon.fasta [pilon] Writing NODE_7516_length_442_cov_25.975078:1-442 changes to pilon.changes [pilon] Writing updated NODE_7516_length_442_cov_25.975078_pilon to pilon.fasta [pilon] Writing NODE_7517_length_442_cov_24.218069:1-442 changes to pilon.changes [pilon] Writing updated NODE_7517_length_442_cov_24.218069_pilon to pilon.fasta [pilon] Writing NODE_7518_length_442_cov_22.239875:1-442 changes to pilon.changes [pilon] Writing updated NODE_7518_length_442_cov_22.239875_pilon to pilon.fasta [pilon] Writing NODE_7519_length_442_cov_21.794393:1-442 changes to pilon.changes [pilon] Writing updated NODE_7519_length_442_cov_21.794393_pilon to pilon.fasta [pilon] Writing NODE_7520_length_442_cov_14.224299:1-442 changes to pilon.changes [pilon] Writing updated NODE_7520_length_442_cov_14.224299_pilon to pilon.fasta [pilon] Writing NODE_7521_length_442_cov_8.909657:1-442 changes to pilon.changes [pilon] Writing updated NODE_7521_length_442_cov_8.909657_pilon to pilon.fasta [pilon] Writing NODE_7522_length_442_cov_2.102804:1-442 changes to pilon.changes [pilon] Writing updated NODE_7522_length_442_cov_2.102804_pilon to pilon.fasta [pilon] Writing NODE_7523_length_442_cov_1.289720:1-442 changes to pilon.changes [pilon] Writing updated NODE_7523_length_442_cov_1.289720_pilon to pilon.fasta [pilon] Writing NODE_7524_length_442_cov_1.252336:1-442 changes to pilon.changes [pilon] Writing updated NODE_7524_length_442_cov_1.252336_pilon to pilon.fasta [pilon] Writing NODE_7525_length_442_cov_1.233645:1-442 changes to pilon.changes [pilon] Writing updated NODE_7525_length_442_cov_1.233645_pilon to pilon.fasta [pilon] Writing NODE_7526_length_442_cov_1.186916:1-442 changes to pilon.changes [pilon] Writing updated NODE_7526_length_442_cov_1.186916_pilon to pilon.fasta [pilon] Writing NODE_7527_length_442_cov_1.040498:1-442 changes to pilon.changes [pilon] Writing updated NODE_7527_length_442_cov_1.040498_pilon to pilon.fasta [pilon] Writing NODE_7528_length_442_cov_0.996885:1-442 changes to pilon.changes [pilon] Writing updated NODE_7528_length_442_cov_0.996885_pilon to pilon.fasta [pilon] Writing NODE_7529_length_442_cov_0.956386:1-442 changes to pilon.changes [pilon] Writing updated NODE_7529_length_442_cov_0.956386_pilon to pilon.fasta [pilon] Writing NODE_7530_length_442_cov_0.912773:1-442 changes to pilon.changes [pilon] Writing updated NODE_7530_length_442_cov_0.912773_pilon to pilon.fasta [pilon] Writing NODE_7531_length_441_cov_48.809375:1-441 changes to pilon.changes [pilon] Writing updated NODE_7531_length_441_cov_48.809375_pilon to pilon.fasta [pilon] Writing NODE_7532_length_441_cov_31.503125:1-441 changes to pilon.changes [pilon] Writing updated NODE_7532_length_441_cov_31.503125_pilon to pilon.fasta [pilon] Writing NODE_7533_length_441_cov_28.609375:1-441 changes to pilon.changes [pilon] Writing updated NODE_7533_length_441_cov_28.609375_pilon to pilon.fasta [pilon] Writing NODE_7534_length_441_cov_24.278125:1-441 changes to pilon.changes [pilon] Writing updated NODE_7534_length_441_cov_24.278125_pilon to pilon.fasta [pilon] Writing NODE_7535_length_441_cov_23.915625:1-441 changes to pilon.changes [pilon] Writing updated NODE_7535_length_441_cov_23.915625_pilon to pilon.fasta [pilon] Writing NODE_7536_length_441_cov_21.609375:1-441 changes to pilon.changes [pilon] Writing updated NODE_7536_length_441_cov_21.609375_pilon to pilon.fasta [pilon] Writing NODE_7537_length_441_cov_21.081250:1-441 changes to pilon.changes [pilon] Writing updated NODE_7537_length_441_cov_21.081250_pilon to pilon.fasta [pilon] Writing NODE_7538_length_441_cov_21.034375:1-441 changes to pilon.changes [pilon] Writing updated NODE_7538_length_441_cov_21.034375_pilon to pilon.fasta [pilon] Writing NODE_7539_length_441_cov_20.684375:1-441 changes to pilon.changes [pilon] Writing updated NODE_7539_length_441_cov_20.684375_pilon to pilon.fasta [pilon] Writing NODE_7540_length_441_cov_20.415625:1-441 changes to pilon.changes [pilon] Writing updated NODE_7540_length_441_cov_20.415625_pilon to pilon.fasta [pilon] Writing NODE_7541_length_441_cov_20.090625:1-441 changes to pilon.changes [pilon] Writing updated NODE_7541_length_441_cov_20.090625_pilon to pilon.fasta [pilon] Writing NODE_7542_length_441_cov_18.856250:1-441 changes to pilon.changes [pilon] Writing updated NODE_7542_length_441_cov_18.856250_pilon to pilon.fasta [pilon] Writing NODE_7543_length_441_cov_18.828125:1-441 changes to pilon.changes [pilon] Writing updated NODE_7543_length_441_cov_18.828125_pilon to pilon.fasta [pilon] Writing NODE_7544_length_441_cov_18.484375:1-441 changes to pilon.changes [pilon] Writing updated NODE_7544_length_441_cov_18.484375_pilon to pilon.fasta [pilon] Writing NODE_7545_length_441_cov_17.356250:1-441 changes to pilon.changes [pilon] Writing updated NODE_7545_length_441_cov_17.356250_pilon to pilon.fasta [pilon] Writing NODE_7546_length_441_cov_16.975000:1-441 changes to pilon.changes [pilon] Writing updated NODE_7546_length_441_cov_16.975000_pilon to pilon.fasta [pilon] Writing NODE_7547_length_441_cov_15.415625:1-441 changes to pilon.changes [pilon] Writing updated NODE_7547_length_441_cov_15.415625_pilon to pilon.fasta [pilon] Writing NODE_7548_length_441_cov_12.153125:1-441 changes to pilon.changes [pilon] Writing updated NODE_7548_length_441_cov_12.153125_pilon to pilon.fasta [pilon] Writing NODE_7549_length_441_cov_11.221875:1-441 changes to pilon.changes [pilon] Writing updated NODE_7549_length_441_cov_11.221875_pilon to pilon.fasta [pilon] Writing NODE_7550_length_441_cov_11.012500:1-441 changes to pilon.changes [pilon] Writing updated NODE_7550_length_441_cov_11.012500_pilon to pilon.fasta [pilon] Writing NODE_7551_length_441_cov_8.859375:1-441 changes to pilon.changes [pilon] Writing updated NODE_7551_length_441_cov_8.859375_pilon to pilon.fasta [pilon] Writing NODE_7552_length_441_cov_2.243750:1-441 changes to pilon.changes [pilon] Writing updated NODE_7552_length_441_cov_2.243750_pilon to pilon.fasta [pilon] Writing NODE_7553_length_441_cov_1.759375:1-441 changes to pilon.changes [pilon] Writing updated NODE_7553_length_441_cov_1.759375_pilon to pilon.fasta [pilon] Writing NODE_7554_length_441_cov_1.109375:1-441 changes to pilon.changes [pilon] Writing updated NODE_7554_length_441_cov_1.109375_pilon to pilon.fasta [pilon] Writing NODE_7555_length_441_cov_0.884375:1-441 changes to pilon.changes [pilon] Writing updated NODE_7555_length_441_cov_0.884375_pilon to pilon.fasta [pilon] Writing NODE_7556_length_440_cov_48.241379:1-440 changes to pilon.changes [pilon] Writing updated NODE_7556_length_440_cov_48.241379_pilon to pilon.fasta [pilon] Writing NODE_7557_length_440_cov_45.153605:1-440 changes to pilon.changes [pilon] Writing updated NODE_7557_length_440_cov_45.153605_pilon to pilon.fasta [pilon] Writing NODE_7558_length_440_cov_40.485893:1-440 changes to pilon.changes [pilon] Writing updated NODE_7558_length_440_cov_40.485893_pilon to pilon.fasta [pilon] Writing NODE_7559_length_440_cov_32.231975:1-440 changes to pilon.changes [pilon] Writing updated NODE_7559_length_440_cov_32.231975_pilon to pilon.fasta [pilon] Writing NODE_7560_length_440_cov_28.927900:1-440 changes to pilon.changes [pilon] Writing updated NODE_7560_length_440_cov_28.927900_pilon to pilon.fasta [pilon] Writing NODE_7561_length_440_cov_26.119122:1-440 changes to pilon.changes [pilon] Writing updated NODE_7561_length_440_cov_26.119122_pilon to pilon.fasta [pilon] Writing NODE_7562_length_440_cov_24.830721:1-440 changes to pilon.changes [pilon] Writing updated NODE_7562_length_440_cov_24.830721_pilon to pilon.fasta [pilon] Writing NODE_7563_length_440_cov_16.902821:1-440 changes to pilon.changes [pilon] Writing updated NODE_7563_length_440_cov_16.902821_pilon to pilon.fasta [pilon] Writing NODE_7564_length_440_cov_15.231975:1-440 changes to pilon.changes [pilon] Writing updated NODE_7564_length_440_cov_15.231975_pilon to pilon.fasta [pilon] Writing NODE_7565_length_440_cov_5.043887:1-440 changes to pilon.changes [pilon] Writing updated NODE_7565_length_440_cov_5.043887_pilon to pilon.fasta [pilon] Writing NODE_7566_length_440_cov_3.717868:1-440 changes to pilon.changes [pilon] Writing updated NODE_7566_length_440_cov_3.717868_pilon to pilon.fasta [pilon] Writing NODE_7567_length_440_cov_2.965517:1-440 changes to pilon.changes [pilon] Writing updated NODE_7567_length_440_cov_2.965517_pilon to pilon.fasta [pilon] Writing NODE_7568_length_440_cov_1.702194:1-440 changes to pilon.changes [pilon] Writing updated NODE_7568_length_440_cov_1.702194_pilon to pilon.fasta [pilon] Writing NODE_7569_length_440_cov_1.125392:1-440 changes to pilon.changes [pilon] Writing updated NODE_7569_length_440_cov_1.125392_pilon to pilon.fasta [pilon] Writing NODE_7570_length_440_cov_1.015674:1-440 changes to pilon.changes [pilon] Writing updated NODE_7570_length_440_cov_1.015674_pilon to pilon.fasta [pilon] Writing NODE_7571_length_440_cov_0.545455:1-440 changes to pilon.changes [pilon] Writing updated NODE_7571_length_440_cov_0.545455_pilon to pilon.fasta [pilon] Writing NODE_7572_length_439_cov_44.383648:1-439 changes to pilon.changes [pilon] Writing updated NODE_7572_length_439_cov_44.383648_pilon to pilon.fasta [pilon] Writing NODE_7573_length_439_cov_28.877358:1-439 changes to pilon.changes [pilon] Writing updated NODE_7573_length_439_cov_28.877358_pilon to pilon.fasta [pilon] Writing NODE_7574_length_439_cov_27.257862:1-439 changes to pilon.changes [pilon] Writing updated NODE_7574_length_439_cov_27.257862_pilon to pilon.fasta [pilon] Writing NODE_7575_length_439_cov_17.179245:1-439 changes to pilon.changes [pilon] Writing updated NODE_7575_length_439_cov_17.179245_pilon to pilon.fasta [pilon] Writing NODE_7576_length_439_cov_13.141509:1-439 changes to pilon.changes [pilon] Writing updated NODE_7576_length_439_cov_13.141509_pilon to pilon.fasta [pilon] Writing NODE_7577_length_439_cov_2.707547:1-439 changes to pilon.changes [pilon] Writing updated NODE_7577_length_439_cov_2.707547_pilon to pilon.fasta [pilon] Writing NODE_7578_length_439_cov_0.745283:1-439 changes to pilon.changes [pilon] Writing updated NODE_7578_length_439_cov_0.745283_pilon to pilon.fasta [pilon] Writing NODE_7579_length_438_cov_39.504732:1-438 changes to pilon.changes [pilon] Writing updated NODE_7579_length_438_cov_39.504732_pilon to pilon.fasta [pilon] Writing NODE_7580_length_438_cov_31.536278:1-438 changes to pilon.changes [pilon] Writing updated NODE_7580_length_438_cov_31.536278_pilon to pilon.fasta [pilon] Writing NODE_7581_length_438_cov_29.406940:1-438 changes to pilon.changes [pilon] Writing updated NODE_7581_length_438_cov_29.406940_pilon to pilon.fasta [pilon] Writing NODE_7582_length_438_cov_28.968454:1-438 changes to pilon.changes [pilon] Writing updated NODE_7582_length_438_cov_28.968454_pilon to pilon.fasta [pilon] Writing NODE_7583_length_438_cov_27.268139:1-438 changes to pilon.changes [pilon] Writing updated NODE_7583_length_438_cov_27.268139_pilon to pilon.fasta [pilon] Writing NODE_7584_length_438_cov_26.479495:1-438 changes to pilon.changes [pilon] Writing updated NODE_7584_length_438_cov_26.479495_pilon to pilon.fasta [pilon] Writing NODE_7585_length_438_cov_25.220820:1-438 changes to pilon.changes [pilon] Writing updated NODE_7585_length_438_cov_25.220820_pilon to pilon.fasta [pilon] Writing NODE_7586_length_438_cov_24.678233:1-438 changes to pilon.changes [pilon] Writing updated NODE_7586_length_438_cov_24.678233_pilon to pilon.fasta [pilon] Writing NODE_7587_length_438_cov_21.507886:1-438 changes to pilon.changes [pilon] Writing updated NODE_7587_length_438_cov_21.507886_pilon to pilon.fasta [pilon] Writing NODE_7588_length_438_cov_21.454259:1-438 changes to pilon.changes [pilon] Writing updated NODE_7588_length_438_cov_21.454259_pilon to pilon.fasta [pilon] Writing NODE_7589_length_438_cov_20.719243:1-438 changes to pilon.changes [pilon] Writing updated NODE_7589_length_438_cov_20.719243_pilon to pilon.fasta [pilon] Writing NODE_7590_length_438_cov_19.539432:1-438 changes to pilon.changes [pilon] Writing updated NODE_7590_length_438_cov_19.539432_pilon to pilon.fasta [pilon] Writing NODE_7591_length_438_cov_18.176656:1-438 changes to pilon.changes [pilon] Writing updated NODE_7591_length_438_cov_18.176656_pilon to pilon.fasta [pilon] Writing NODE_7592_length_438_cov_17.337539:1-438 changes to pilon.changes [pilon] Writing updated NODE_7592_length_438_cov_17.337539_pilon to pilon.fasta [pilon] Writing NODE_7593_length_438_cov_13.107256:1-438 changes to pilon.changes [pilon] Writing updated NODE_7593_length_438_cov_13.107256_pilon to pilon.fasta [pilon] Writing NODE_7594_length_438_cov_8.921136:1-438 changes to pilon.changes [pilon] Writing updated NODE_7594_length_438_cov_8.921136_pilon to pilon.fasta [pilon] Writing NODE_7595_length_438_cov_8.599369:1-438 changes to pilon.changes [pilon] Writing updated NODE_7595_length_438_cov_8.599369_pilon to pilon.fasta [pilon] Writing NODE_7596_length_438_cov_7.861199:1-438 changes to pilon.changes [pilon] Writing updated NODE_7596_length_438_cov_7.861199_pilon to pilon.fasta [pilon] Writing NODE_7597_length_438_cov_6.902208:1-438 changes to pilon.changes [pilon] Writing updated NODE_7597_length_438_cov_6.902208_pilon to pilon.fasta [pilon] Writing NODE_7598_length_438_cov_6.760252:1-438 changes to pilon.changes [pilon] Writing updated NODE_7598_length_438_cov_6.760252_pilon to pilon.fasta [pilon] Writing NODE_7599_length_438_cov_5.498423:1-438 changes to pilon.changes [pilon] Writing updated NODE_7599_length_438_cov_5.498423_pilon to pilon.fasta [pilon] Writing NODE_7600_length_438_cov_2.419558:1-438 changes to pilon.changes [pilon] Writing updated NODE_7600_length_438_cov_2.419558_pilon to pilon.fasta [pilon] Writing NODE_7601_length_438_cov_0.656151:1-438 changes to pilon.changes [pilon] Writing updated NODE_7601_length_438_cov_0.656151_pilon to pilon.fasta [pilon] Writing NODE_7602_length_437_cov_65.639241:1-437 changes to pilon.changes [pilon] Writing updated NODE_7602_length_437_cov_65.639241_pilon to pilon.fasta [pilon] Writing NODE_7603_length_437_cov_34.598101:1-437 changes to pilon.changes [pilon] Writing updated NODE_7603_length_437_cov_34.598101_pilon to pilon.fasta [pilon] Writing NODE_7604_length_437_cov_30.341772:1-437 changes to pilon.changes [pilon] Writing updated NODE_7604_length_437_cov_30.341772_pilon to pilon.fasta [pilon] Writing NODE_7605_length_437_cov_24.968354:1-437 changes to pilon.changes [pilon] Writing updated NODE_7605_length_437_cov_24.968354_pilon to pilon.fasta [pilon] Writing NODE_7606_length_437_cov_24.958861:1-437 changes to pilon.changes [pilon] Writing updated NODE_7606_length_437_cov_24.958861_pilon to pilon.fasta [pilon] Writing NODE_7607_length_437_cov_24.563291:1-437 changes to pilon.changes [pilon] Writing updated NODE_7607_length_437_cov_24.563291_pilon to pilon.fasta [pilon] Writing NODE_7608_length_437_cov_17.151899:1-437 changes to pilon.changes [pilon] Writing updated NODE_7608_length_437_cov_17.151899_pilon to pilon.fasta [pilon] Writing NODE_7609_length_437_cov_16.933544:1-437 changes to pilon.changes [pilon] Writing updated NODE_7609_length_437_cov_16.933544_pilon to pilon.fasta [pilon] Writing NODE_7610_length_437_cov_13.047468:1-437 changes to pilon.changes [pilon] Writing updated NODE_7610_length_437_cov_13.047468_pilon to pilon.fasta [pilon] Writing NODE_7611_length_437_cov_7.892405:1-437 changes to pilon.changes [pilon] Writing updated NODE_7611_length_437_cov_7.892405_pilon to pilon.fasta [pilon] Writing NODE_7612_length_437_cov_6.905063:1-437 changes to pilon.changes [pilon] Writing updated NODE_7612_length_437_cov_6.905063_pilon to pilon.fasta [pilon] Writing NODE_7613_length_437_cov_3.765823:1-437 changes to pilon.changes [pilon] Writing updated NODE_7613_length_437_cov_3.765823_pilon to pilon.fasta [pilon] Writing NODE_7614_length_437_cov_2.971519:1-437 changes to pilon.changes [pilon] Writing updated NODE_7614_length_437_cov_2.971519_pilon to pilon.fasta [pilon] Writing NODE_7615_length_437_cov_0.639241:1-437 changes to pilon.changes [pilon] Writing updated NODE_7615_length_437_cov_0.639241_pilon to pilon.fasta [pilon] Writing NODE_7616_length_437_cov_0.588608:1-437 changes to pilon.changes [pilon] Writing updated NODE_7616_length_437_cov_0.588608_pilon to pilon.fasta [pilon] Writing NODE_7617_length_436_cov_64.711111:1-436 changes to pilon.changes [pilon] Writing updated NODE_7617_length_436_cov_64.711111_pilon to pilon.fasta [pilon] Writing NODE_7618_length_436_cov_60.247619:1-436 changes to pilon.changes [pilon] Writing updated NODE_7618_length_436_cov_60.247619_pilon to pilon.fasta [pilon] Writing NODE_7619_length_436_cov_46.285714:1-436 changes to pilon.changes [pilon] Writing updated NODE_7619_length_436_cov_46.285714_pilon to pilon.fasta [pilon] Writing NODE_7620_length_436_cov_27.628571:1-436 changes to pilon.changes [pilon] Writing updated NODE_7620_length_436_cov_27.628571_pilon to pilon.fasta [pilon] Writing NODE_7621_length_436_cov_26.168254:1-436 changes to pilon.changes [pilon] Writing updated NODE_7621_length_436_cov_26.168254_pilon to pilon.fasta [pilon] Writing NODE_7622_length_436_cov_24.076190:1-436 changes to pilon.changes [pilon] Writing updated NODE_7622_length_436_cov_24.076190_pilon to pilon.fasta [pilon] Writing NODE_7623_length_436_cov_19.288889:1-436 changes to pilon.changes [pilon] Writing updated NODE_7623_length_436_cov_19.288889_pilon to pilon.fasta [pilon] Writing NODE_7624_length_436_cov_14.825397:1-436 changes to pilon.changes [pilon] Writing updated NODE_7624_length_436_cov_14.825397_pilon to pilon.fasta [pilon] Writing NODE_7625_length_436_cov_13.603175:1-436 changes to pilon.changes [pilon] Writing updated NODE_7625_length_436_cov_13.603175_pilon to pilon.fasta [pilon] Writing NODE_7626_length_436_cov_12.371429:1-436 changes to pilon.changes [pilon] Writing updated NODE_7626_length_436_cov_12.371429_pilon to pilon.fasta [pilon] Writing NODE_7627_length_436_cov_8.063492:1-436 changes to pilon.changes [pilon] Writing updated NODE_7627_length_436_cov_8.063492_pilon to pilon.fasta [pilon] Writing NODE_7628_length_436_cov_7.288889:1-436 changes to pilon.changes [pilon] Writing updated NODE_7628_length_436_cov_7.288889_pilon to pilon.fasta [pilon] Writing NODE_7629_length_436_cov_6.292063:1-436 changes to pilon.changes [pilon] Writing updated NODE_7629_length_436_cov_6.292063_pilon to pilon.fasta [pilon] Writing NODE_7630_length_436_cov_2.736508:1-436 changes to pilon.changes [pilon] Writing updated NODE_7630_length_436_cov_2.736508_pilon to pilon.fasta [pilon] Writing NODE_7631_length_436_cov_2.050794:1-436 changes to pilon.changes [pilon] Writing updated NODE_7631_length_436_cov_2.050794_pilon to pilon.fasta [pilon] Writing NODE_7632_length_436_cov_1.076190:1-436 changes to pilon.changes [pilon] Writing updated NODE_7632_length_436_cov_1.076190_pilon to pilon.fasta [pilon] Writing NODE_7633_length_436_cov_0.917460:1-436 changes to pilon.changes [pilon] Writing updated NODE_7633_length_436_cov_0.917460_pilon to pilon.fasta [pilon] Writing NODE_7634_length_436_cov_0.857143:1-436 changes to pilon.changes [pilon] Writing updated NODE_7634_length_436_cov_0.857143_pilon to pilon.fasta [pilon] Writing NODE_7635_length_436_cov_0.631746:1-436 changes to pilon.changes [pilon] Writing updated NODE_7635_length_436_cov_0.631746_pilon to pilon.fasta [pilon] Writing NODE_7636_length_436_cov_0.612698:1-436 changes to pilon.changes [pilon] Writing updated NODE_7636_length_436_cov_0.612698_pilon to pilon.fasta [pilon] Writing NODE_7637_length_436_cov_0.526984:1-436 changes to pilon.changes [pilon] Writing updated NODE_7637_length_436_cov_0.526984_pilon to pilon.fasta [pilon] Writing NODE_7638_length_435_cov_69.939490:1-435 changes to pilon.changes [pilon] Writing updated NODE_7638_length_435_cov_69.939490_pilon to pilon.fasta [pilon] Writing NODE_7639_length_435_cov_60.420382:1-435 changes to pilon.changes [pilon] Writing updated NODE_7639_length_435_cov_60.420382_pilon to pilon.fasta [pilon] Writing NODE_7640_length_435_cov_35.044586:1-435 changes to pilon.changes [pilon] Writing updated NODE_7640_length_435_cov_35.044586_pilon to pilon.fasta [pilon] Writing NODE_7641_length_435_cov_34.783439:1-435 changes to pilon.changes [pilon] Writing updated NODE_7641_length_435_cov_34.783439_pilon to pilon.fasta [pilon] Writing NODE_7642_length_435_cov_34.493631:1-435 changes to pilon.changes [pilon] Writing updated NODE_7642_length_435_cov_34.493631_pilon to pilon.fasta [pilon] Writing NODE_7643_length_435_cov_31.901274:1-435 changes to pilon.changes [pilon] Writing updated NODE_7643_length_435_cov_31.901274_pilon to pilon.fasta [pilon] Writing NODE_7644_length_435_cov_31.646497:1-435 changes to pilon.changes [pilon] Writing updated NODE_7644_length_435_cov_31.646497_pilon to pilon.fasta [pilon] Writing NODE_7645_length_435_cov_29.299363:1-435 changes to pilon.changes [pilon] Writing updated NODE_7645_length_435_cov_29.299363_pilon to pilon.fasta [pilon] Writing NODE_7646_length_435_cov_27.114650:1-435 changes to pilon.changes [pilon] Writing updated NODE_7646_length_435_cov_27.114650_pilon to pilon.fasta [pilon] Writing NODE_7647_length_435_cov_26.378981:1-435 changes to pilon.changes [pilon] Writing updated NODE_7647_length_435_cov_26.378981_pilon to pilon.fasta [pilon] Writing NODE_7648_length_435_cov_26.238854:1-435 changes to pilon.changes [pilon] Writing updated NODE_7648_length_435_cov_26.238854_pilon to pilon.fasta [pilon] Writing NODE_7649_length_435_cov_20.522293:1-435 changes to pilon.changes [pilon] Writing updated NODE_7649_length_435_cov_20.522293_pilon to pilon.fasta [pilon] Writing NODE_7650_length_435_cov_18.108280:1-435 changes to pilon.changes [pilon] Writing updated NODE_7650_length_435_cov_18.108280_pilon to pilon.fasta [pilon] Writing NODE_7651_length_435_cov_16.799363:1-435 changes to pilon.changes [pilon] Writing updated NODE_7651_length_435_cov_16.799363_pilon to pilon.fasta [pilon] Writing NODE_7652_length_435_cov_16.391720:1-435 changes to pilon.changes [pilon] Writing updated NODE_7652_length_435_cov_16.391720_pilon to pilon.fasta [pilon] Writing NODE_7653_length_435_cov_13.283439:1-435 changes to pilon.changes [pilon] Writing updated NODE_7653_length_435_cov_13.283439_pilon to pilon.fasta [pilon] Writing NODE_7654_length_435_cov_10.691083:1-435 changes to pilon.changes [pilon] Writing updated NODE_7654_length_435_cov_10.691083_pilon to pilon.fasta [pilon] Writing NODE_7655_length_435_cov_10.347134:1-435 changes to pilon.changes [pilon] Writing updated NODE_7655_length_435_cov_10.347134_pilon to pilon.fasta [pilon] Writing NODE_7656_length_435_cov_9.152866:1-435 changes to pilon.changes [pilon] Writing updated NODE_7656_length_435_cov_9.152866_pilon to pilon.fasta [pilon] Writing NODE_7657_length_435_cov_9.076433:1-435 changes to pilon.changes [pilon] Writing updated NODE_7657_length_435_cov_9.076433_pilon to pilon.fasta [pilon] Writing NODE_7658_length_435_cov_8.633758:1-435 changes to pilon.changes [pilon] Writing updated NODE_7658_length_435_cov_8.633758_pilon to pilon.fasta [pilon] Writing NODE_7659_length_435_cov_6.914013:1-435 changes to pilon.changes [pilon] Writing updated NODE_7659_length_435_cov_6.914013_pilon to pilon.fasta [pilon] Writing NODE_7660_length_435_cov_1.506369:1-435 changes to pilon.changes [pilon] Writing updated NODE_7660_length_435_cov_1.506369_pilon to pilon.fasta [pilon] Writing NODE_7661_length_435_cov_0.538217:1-435 changes to pilon.changes [pilon] Writing updated NODE_7661_length_435_cov_0.538217_pilon to pilon.fasta [pilon] Writing NODE_7662_length_434_cov_60.581470:1-434 changes to pilon.changes [pilon] Writing updated NODE_7662_length_434_cov_60.581470_pilon to pilon.fasta [pilon] Writing NODE_7663_length_434_cov_59.309904:1-434 changes to pilon.changes [pilon] Writing updated NODE_7663_length_434_cov_59.309904_pilon to pilon.fasta [pilon] Writing NODE_7664_length_434_cov_57.900958:1-434 changes to pilon.changes [pilon] Writing updated NODE_7664_length_434_cov_57.900958_pilon to pilon.fasta [pilon] Writing NODE_7665_length_434_cov_56.683706:1-434 changes to pilon.changes [pilon] Writing updated NODE_7665_length_434_cov_56.683706_pilon to pilon.fasta [pilon] Writing NODE_7666_length_434_cov_30.942492:1-434 changes to pilon.changes [pilon] Writing updated NODE_7666_length_434_cov_30.942492_pilon to pilon.fasta [pilon] Writing NODE_7667_length_434_cov_29.150160:1-434 changes to pilon.changes [pilon] Writing updated NODE_7667_length_434_cov_29.150160_pilon to pilon.fasta [pilon] Writing NODE_7668_length_434_cov_28.287540:1-434 changes to pilon.changes [pilon] Writing updated NODE_7668_length_434_cov_28.287540_pilon to pilon.fasta [pilon] Writing NODE_7669_length_434_cov_22.392971:1-434 changes to pilon.changes [pilon] Writing updated NODE_7669_length_434_cov_22.392971_pilon to pilon.fasta [pilon] Writing NODE_7670_length_434_cov_21.581470:1-434 changes to pilon.changes [pilon] Writing updated NODE_7670_length_434_cov_21.581470_pilon to pilon.fasta [pilon] Writing NODE_7671_length_434_cov_20.977636:1-434 changes to pilon.changes [pilon] Writing updated NODE_7671_length_434_cov_20.977636_pilon to pilon.fasta [pilon] Writing NODE_7672_length_434_cov_15.827476:1-434 changes to pilon.changes [pilon] Writing updated NODE_7672_length_434_cov_15.827476_pilon to pilon.fasta [pilon] Writing NODE_7673_length_434_cov_15.092652:1-434 changes to pilon.changes [pilon] Writing updated NODE_7673_length_434_cov_15.092652_pilon to pilon.fasta [pilon] Writing NODE_7674_length_434_cov_13.568690:1-434 changes to pilon.changes [pilon] Writing updated NODE_7674_length_434_cov_13.568690_pilon to pilon.fasta [pilon] Writing NODE_7675_length_434_cov_13.153355:1-434 changes to pilon.changes [pilon] Writing updated NODE_7675_length_434_cov_13.153355_pilon to pilon.fasta [pilon] Writing NODE_7676_length_434_cov_9.575080:1-434 changes to pilon.changes [pilon] Writing updated NODE_7676_length_434_cov_9.575080_pilon to pilon.fasta [pilon] Writing NODE_7677_length_434_cov_0.958466:1-434 changes to pilon.changes [pilon] Writing updated NODE_7677_length_434_cov_0.958466_pilon to pilon.fasta [pilon] Writing NODE_7678_length_434_cov_0.597444:1-434 changes to pilon.changes [pilon] Writing updated NODE_7678_length_434_cov_0.597444_pilon to pilon.fasta [pilon] Writing NODE_7679_length_434_cov_0.488818:1-434 changes to pilon.changes [pilon] Writing updated NODE_7679_length_434_cov_0.488818_pilon to pilon.fasta [pilon] Writing NODE_7680_length_433_cov_52.294872:1-433 changes to pilon.changes [pilon] Writing updated NODE_7680_length_433_cov_52.294872_pilon to pilon.fasta [pilon] Writing NODE_7681_length_433_cov_32.173077:1-433 changes to pilon.changes [pilon] Writing updated NODE_7681_length_433_cov_32.173077_pilon to pilon.fasta [pilon] Writing NODE_7682_length_433_cov_18.262821:1-433 changes to pilon.changes [pilon] Writing updated NODE_7682_length_433_cov_18.262821_pilon to pilon.fasta [pilon] Writing NODE_7683_length_433_cov_7.387821:1-433 changes to pilon.changes [pilon] Writing updated NODE_7683_length_433_cov_7.387821_pilon to pilon.fasta [pilon] Writing NODE_7684_length_433_cov_4.801282:1-433 changes to pilon.changes [pilon] Writing updated NODE_7684_length_433_cov_4.801282_pilon to pilon.fasta [pilon] Writing NODE_7685_length_433_cov_2.060897:1-433 changes to pilon.changes [pilon] Writing updated NODE_7685_length_433_cov_2.060897_pilon to pilon.fasta [pilon] Writing NODE_7686_length_433_cov_1.509615:1-433 changes to pilon.changes [pilon] Writing updated NODE_7686_length_433_cov_1.509615_pilon to pilon.fasta [pilon] Writing NODE_7687_length_433_cov_1.493590:1-433 changes to pilon.changes [pilon] Writing updated NODE_7687_length_433_cov_1.493590_pilon to pilon.fasta [pilon] Writing NODE_7688_length_433_cov_1.246795:1-433 changes to pilon.changes [pilon] Writing updated NODE_7688_length_433_cov_1.246795_pilon to pilon.fasta [pilon] Writing NODE_7689_length_433_cov_1.022436:1-433 changes to pilon.changes [pilon] Writing updated NODE_7689_length_433_cov_1.022436_pilon to pilon.fasta [pilon] Writing NODE_7690_length_433_cov_0.689103:1-433 changes to pilon.changes [pilon] Writing updated NODE_7690_length_433_cov_0.689103_pilon to pilon.fasta [pilon] Writing NODE_7691_length_433_cov_0.371795:1-433 changes to pilon.changes [pilon] Writing updated NODE_7691_length_433_cov_0.371795_pilon to pilon.fasta [pilon] Writing NODE_7692_length_432_cov_52.913183:1-432 changes to pilon.changes [pilon] Writing updated NODE_7692_length_432_cov_52.913183_pilon to pilon.fasta [pilon] Writing NODE_7693_length_432_cov_37.479100:1-432 changes to pilon.changes [pilon] Writing updated NODE_7693_length_432_cov_37.479100_pilon to pilon.fasta [pilon] Writing NODE_7694_length_432_cov_36.392283:1-432 changes to pilon.changes [pilon] Writing updated NODE_7694_length_432_cov_36.392283_pilon to pilon.fasta [pilon] Writing NODE_7695_length_432_cov_33.967846:1-432 changes to pilon.changes [pilon] Writing updated NODE_7695_length_432_cov_33.967846_pilon to pilon.fasta [pilon] Writing NODE_7696_length_432_cov_31.845659:1-432 changes to pilon.changes [pilon] Writing updated NODE_7696_length_432_cov_31.845659_pilon to pilon.fasta [pilon] Writing NODE_7697_length_432_cov_29.527331:1-432 changes to pilon.changes [pilon] Writing updated NODE_7697_length_432_cov_29.527331_pilon to pilon.fasta [pilon] Writing NODE_7698_length_432_cov_29.202572:1-432 changes to pilon.changes [pilon] Writing updated NODE_7698_length_432_cov_29.202572_pilon to pilon.fasta [pilon] Writing NODE_7699_length_432_cov_22.353698:1-432 changes to pilon.changes [pilon] Writing updated NODE_7699_length_432_cov_22.353698_pilon to pilon.fasta [pilon] Writing NODE_7700_length_432_cov_20.315113:1-432 changes to pilon.changes [pilon] Writing updated NODE_7700_length_432_cov_20.315113_pilon to pilon.fasta [pilon] Writing NODE_7701_length_432_cov_20.282958:1-432 changes to pilon.changes [pilon] Writing updated NODE_7701_length_432_cov_20.282958_pilon to pilon.fasta [pilon] Writing NODE_7702_length_432_cov_19.909968:1-432 changes to pilon.changes [pilon] Writing updated NODE_7702_length_432_cov_19.909968_pilon to pilon.fasta [pilon] Writing NODE_7703_length_432_cov_19.263666:1-432 changes to pilon.changes [pilon] Writing updated NODE_7703_length_432_cov_19.263666_pilon to pilon.fasta [pilon] Writing NODE_7704_length_432_cov_18.083601:1-432 changes to pilon.changes [pilon] Writing updated NODE_7704_length_432_cov_18.083601_pilon to pilon.fasta [pilon] Writing NODE_7705_length_432_cov_16.405145:1-432 changes to pilon.changes [pilon] Writing updated NODE_7705_length_432_cov_16.405145_pilon to pilon.fasta [pilon] Writing NODE_7706_length_432_cov_15.527331:1-432 changes to pilon.changes [pilon] Writing updated NODE_7706_length_432_cov_15.527331_pilon to pilon.fasta [pilon] Writing NODE_7707_length_432_cov_15.196141:1-432 changes to pilon.changes [pilon] Writing updated NODE_7707_length_432_cov_15.196141_pilon to pilon.fasta [pilon] Writing NODE_7708_length_432_cov_15.099678:1-432 changes to pilon.changes [pilon] Writing updated NODE_7708_length_432_cov_15.099678_pilon to pilon.fasta [pilon] Writing NODE_7709_length_432_cov_14.739550:1-432 changes to pilon.changes [pilon] Writing updated NODE_7709_length_432_cov_14.739550_pilon to pilon.fasta [pilon] Writing NODE_7710_length_432_cov_14.723473:1-432 changes to pilon.changes [pilon] Writing updated NODE_7710_length_432_cov_14.723473_pilon to pilon.fasta [pilon] Writing NODE_7711_length_432_cov_13.800643:1-432 changes to pilon.changes [pilon] Writing updated NODE_7711_length_432_cov_13.800643_pilon to pilon.fasta [pilon] Writing NODE_7712_length_432_cov_13.778135:1-432 changes to pilon.changes [pilon] Writing updated NODE_7712_length_432_cov_13.778135_pilon to pilon.fasta [pilon] Writing NODE_7713_length_432_cov_12.141479:1-432 changes to pilon.changes [pilon] Writing updated NODE_7713_length_432_cov_12.141479_pilon to pilon.fasta [pilon] Writing NODE_7714_length_432_cov_10.864952:1-432 changes to pilon.changes [pilon] Writing updated NODE_7714_length_432_cov_10.864952_pilon to pilon.fasta [pilon] Writing NODE_7715_length_432_cov_10.633441:1-432 changes to pilon.changes [pilon] Writing updated NODE_7715_length_432_cov_10.633441_pilon to pilon.fasta [pilon] Writing NODE_7716_length_432_cov_7.591640:1-432 changes to pilon.changes [pilon] Writing updated NODE_7716_length_432_cov_7.591640_pilon to pilon.fasta [pilon] Writing NODE_7717_length_432_cov_2.151125:1-432 changes to pilon.changes [pilon] Writing updated NODE_7717_length_432_cov_2.151125_pilon to pilon.fasta [pilon] Writing NODE_7718_length_432_cov_1.649518:1-432 changes to pilon.changes [pilon] Writing updated NODE_7718_length_432_cov_1.649518_pilon to pilon.fasta [pilon] Writing NODE_7719_length_432_cov_1.511254:1-432 changes to pilon.changes [pilon] Writing updated NODE_7719_length_432_cov_1.511254_pilon to pilon.fasta [pilon] Writing NODE_7720_length_432_cov_0.836013:1-432 changes to pilon.changes [pilon] Writing updated NODE_7720_length_432_cov_0.836013_pilon to pilon.fasta [pilon] Writing NODE_7721_length_431_cov_51.551613:1-431 changes to pilon.changes [pilon] Writing updated NODE_7721_length_431_cov_51.551613_pilon to pilon.fasta [pilon] Writing NODE_7722_length_431_cov_44.090323:1-431 changes to pilon.changes [pilon] Writing updated NODE_7722_length_431_cov_44.090323_pilon to pilon.fasta [pilon] Writing NODE_7723_length_431_cov_36.264516:1-431 changes to pilon.changes [pilon] Writing updated NODE_7723_length_431_cov_36.264516_pilon to pilon.fasta [pilon] Writing NODE_7724_length_431_cov_26.032258:1-431 changes to pilon.changes [pilon] Writing updated NODE_7724_length_431_cov_26.032258_pilon to pilon.fasta [pilon] Writing NODE_7725_length_431_cov_24.641935:1-431 changes to pilon.changes [pilon] Writing updated NODE_7725_length_431_cov_24.641935_pilon to pilon.fasta [pilon] Writing NODE_7726_length_431_cov_24.138710:1-431 changes to pilon.changes [pilon] Writing updated NODE_7726_length_431_cov_24.138710_pilon to pilon.fasta [pilon] Writing NODE_7727_length_431_cov_21.093548:1-431 changes to pilon.changes [pilon] Writing updated NODE_7727_length_431_cov_21.093548_pilon to pilon.fasta [pilon] Writing NODE_7728_length_431_cov_19.919355:1-431 changes to pilon.changes [pilon] Writing updated NODE_7728_length_431_cov_19.919355_pilon to pilon.fasta [pilon] Writing NODE_7729_length_431_cov_18.987097:1-431 changes to pilon.changes [pilon] Writing updated NODE_7729_length_431_cov_18.987097_pilon to pilon.fasta [pilon] Writing NODE_7730_length_431_cov_5.422581:1-431 changes to pilon.changes [pilon] Writing updated NODE_7730_length_431_cov_5.422581_pilon to pilon.fasta [pilon] Writing NODE_7731_length_431_cov_1.109677:1-431 changes to pilon.changes [pilon] Writing updated NODE_7731_length_431_cov_1.109677_pilon to pilon.fasta [pilon] Writing NODE_7732_length_431_cov_0.964516:1-431 changes to pilon.changes [pilon] Writing updated NODE_7732_length_431_cov_0.964516_pilon to pilon.fasta [pilon] Writing NODE_7733_length_431_cov_0.606452:1-431 changes to pilon.changes [pilon] Writing updated NODE_7733_length_431_cov_0.606452_pilon to pilon.fasta [pilon] Writing NODE_7734_length_430_cov_60.317152:1-430 changes to pilon.changes [pilon] Writing updated NODE_7734_length_430_cov_60.317152_pilon to pilon.fasta [pilon] Writing NODE_7735_length_430_cov_48.236246:1-430 changes to pilon.changes [pilon] Writing updated NODE_7735_length_430_cov_48.236246_pilon to pilon.fasta [pilon] Writing NODE_7736_length_430_cov_43.822006:1-430 changes to pilon.changes [pilon] Writing updated NODE_7736_length_430_cov_43.822006_pilon to pilon.fasta [pilon] Writing NODE_7737_length_430_cov_31.799353:1-430 changes to pilon.changes [pilon] Writing updated NODE_7737_length_430_cov_31.799353_pilon to pilon.fasta [pilon] Writing NODE_7738_length_430_cov_29.165049:1-430 changes to pilon.changes [pilon] Writing updated NODE_7738_length_430_cov_29.165049_pilon to pilon.fasta [pilon] Writing NODE_7739_length_430_cov_28.449838:1-430 changes to pilon.changes [pilon] Writing updated NODE_7739_length_430_cov_28.449838_pilon to pilon.fasta [pilon] Writing NODE_7740_length_430_cov_25.831715:1-430 changes to pilon.changes [pilon] Writing updated NODE_7740_length_430_cov_25.831715_pilon to pilon.fasta [pilon] Writing NODE_7741_length_430_cov_13.906149:1-430 changes to pilon.changes [pilon] Writing updated NODE_7741_length_430_cov_13.906149_pilon to pilon.fasta [pilon] Writing NODE_7742_length_430_cov_10.944984:1-430 changes to pilon.changes [pilon] Writing updated NODE_7742_length_430_cov_10.944984_pilon to pilon.fasta [pilon] Writing NODE_7743_length_430_cov_2.262136:1-430 changes to pilon.changes [pilon] Writing updated NODE_7743_length_430_cov_2.262136_pilon to pilon.fasta [pilon] Writing NODE_7744_length_430_cov_1.715210:1-430 changes to pilon.changes [pilon] Writing updated NODE_7744_length_430_cov_1.715210_pilon to pilon.fasta [pilon] Writing NODE_7745_length_430_cov_1.313916:1-430 changes to pilon.changes [pilon] Writing updated NODE_7745_length_430_cov_1.313916_pilon to pilon.fasta [pilon] Writing NODE_7746_length_430_cov_1.278317:1-430 changes to pilon.changes [pilon] Writing updated NODE_7746_length_430_cov_1.278317_pilon to pilon.fasta [pilon] Writing NODE_7747_length_430_cov_1.116505:1-430 changes to pilon.changes [pilon] Writing updated NODE_7747_length_430_cov_1.116505_pilon to pilon.fasta [pilon] Writing NODE_7748_length_430_cov_0.711974:1-430 changes to pilon.changes [pilon] Writing updated NODE_7748_length_430_cov_0.711974_pilon to pilon.fasta [pilon] Writing NODE_7749_length_430_cov_0.556634:1-430 changes to pilon.changes [pilon] Writing updated NODE_7749_length_430_cov_0.556634_pilon to pilon.fasta [pilon] Writing NODE_7750_length_429_cov_34.509740:1-429 changes to pilon.changes [pilon] Writing updated NODE_7750_length_429_cov_34.509740_pilon to pilon.fasta [pilon] Writing NODE_7751_length_429_cov_26.376623:1-429 changes to pilon.changes [pilon] Writing updated NODE_7751_length_429_cov_26.376623_pilon to pilon.fasta [pilon] Writing NODE_7752_length_429_cov_24.230519:1-429 changes to pilon.changes [pilon] Writing updated NODE_7752_length_429_cov_24.230519_pilon to pilon.fasta [pilon] Writing NODE_7753_length_429_cov_23.740260:1-429 changes to pilon.changes [pilon] Writing updated NODE_7753_length_429_cov_23.740260_pilon to pilon.fasta [pilon] Writing NODE_7754_length_429_cov_23.558442:1-429 changes to pilon.changes [pilon] Writing updated NODE_7754_length_429_cov_23.558442_pilon to pilon.fasta [pilon] Writing NODE_7755_length_429_cov_23.217532:1-429 changes to pilon.changes [pilon] Writing updated NODE_7755_length_429_cov_23.217532_pilon to pilon.fasta [pilon] Writing NODE_7756_length_429_cov_23.178571:1-429 changes to pilon.changes [pilon] Writing updated NODE_7756_length_429_cov_23.178571_pilon to pilon.fasta [pilon] Writing NODE_7757_length_429_cov_22.876623:1-429 changes to pilon.changes [pilon] Writing updated NODE_7757_length_429_cov_22.876623_pilon to pilon.fasta [pilon] Writing NODE_7758_length_429_cov_22.379870:1-429 changes to pilon.changes [pilon] Writing updated NODE_7758_length_429_cov_22.379870_pilon to pilon.fasta [pilon] Writing NODE_7759_length_429_cov_21.561688:1-429 changes to pilon.changes [pilon] Writing updated NODE_7759_length_429_cov_21.561688_pilon to pilon.fasta [pilon] Writing NODE_7760_length_429_cov_18.977273:1-429 changes to pilon.changes [pilon] Writing updated NODE_7760_length_429_cov_18.977273_pilon to pilon.fasta [pilon] Writing NODE_7761_length_429_cov_16.850649:1-429 changes to pilon.changes [pilon] Writing updated NODE_7761_length_429_cov_16.850649_pilon to pilon.fasta [pilon] Writing NODE_7762_length_429_cov_16.574675:1-429 changes to pilon.changes [pilon] Writing updated NODE_7762_length_429_cov_16.574675_pilon to pilon.fasta [pilon] Writing NODE_7763_length_429_cov_15.753247:1-429 changes to pilon.changes [pilon] Writing updated NODE_7763_length_429_cov_15.753247_pilon to pilon.fasta [pilon] Writing NODE_7764_length_429_cov_14.961039:1-429 changes to pilon.changes [pilon] Writing updated NODE_7764_length_429_cov_14.961039_pilon to pilon.fasta [pilon] Writing NODE_7765_length_429_cov_13.782468:1-429 changes to pilon.changes [pilon] Writing updated NODE_7765_length_429_cov_13.782468_pilon to pilon.fasta [pilon] Writing NODE_7766_length_429_cov_13.152597:1-429 changes to pilon.changes [pilon] Writing updated NODE_7766_length_429_cov_13.152597_pilon to pilon.fasta [pilon] Writing NODE_7767_length_429_cov_11.740260:1-429 changes to pilon.changes [pilon] Writing updated NODE_7767_length_429_cov_11.740260_pilon to pilon.fasta [pilon] Writing NODE_7768_length_429_cov_11.620130:1-429 changes to pilon.changes [pilon] Writing updated NODE_7768_length_429_cov_11.620130_pilon to pilon.fasta [pilon] Writing NODE_7769_length_429_cov_10.750000:1-429 changes to pilon.changes [pilon] Writing updated NODE_7769_length_429_cov_10.750000_pilon to pilon.fasta [pilon] Writing NODE_7770_length_429_cov_10.678571:1-429 changes to pilon.changes [pilon] Writing updated NODE_7770_length_429_cov_10.678571_pilon to pilon.fasta [pilon] Writing NODE_7771_length_429_cov_10.464286:1-429 changes to pilon.changes [pilon] Writing updated NODE_7771_length_429_cov_10.464286_pilon to pilon.fasta [pilon] Writing NODE_7772_length_429_cov_7.996753:1-429 changes to pilon.changes [pilon] Writing updated NODE_7772_length_429_cov_7.996753_pilon to pilon.fasta [pilon] Writing NODE_7773_length_429_cov_7.850649:1-429 changes to pilon.changes [pilon] Writing updated NODE_7773_length_429_cov_7.850649_pilon to pilon.fasta [pilon] Writing NODE_7774_length_429_cov_5.107143:1-429 changes to pilon.changes [pilon] Writing updated NODE_7774_length_429_cov_5.107143_pilon to pilon.fasta [pilon] Writing NODE_7775_length_429_cov_1.782468:1-429 changes to pilon.changes [pilon] Writing updated NODE_7775_length_429_cov_1.782468_pilon to pilon.fasta [pilon] Writing NODE_7776_length_429_cov_1.665584:1-429 changes to pilon.changes [pilon] Writing updated NODE_7776_length_429_cov_1.665584_pilon to pilon.fasta [pilon] Writing NODE_7777_length_429_cov_1.418831:1-429 changes to pilon.changes [pilon] Writing updated NODE_7777_length_429_cov_1.418831_pilon to pilon.fasta [pilon] Writing NODE_7778_length_429_cov_1.188312:1-429 changes to pilon.changes [pilon] Writing updated NODE_7778_length_429_cov_1.188312_pilon to pilon.fasta [pilon] Writing NODE_7779_length_429_cov_0.974026:1-429 changes to pilon.changes [pilon] Writing updated NODE_7779_length_429_cov_0.974026_pilon to pilon.fasta [pilon] Writing NODE_7780_length_429_cov_0.720779:1-429 changes to pilon.changes [pilon] Writing updated NODE_7780_length_429_cov_0.720779_pilon to pilon.fasta [pilon] Writing NODE_7781_length_428_cov_63.775244:1-428 changes to pilon.changes [pilon] Writing updated NODE_7781_length_428_cov_63.775244_pilon to pilon.fasta [pilon] Writing NODE_7782_length_428_cov_62.889251:1-428 changes to pilon.changes [pilon] Writing updated NODE_7782_length_428_cov_62.889251_pilon to pilon.fasta [pilon] Writing NODE_7783_length_428_cov_53.729642:1-428 changes to pilon.changes [pilon] Writing updated NODE_7783_length_428_cov_53.729642_pilon to pilon.fasta [pilon] Writing NODE_7784_length_428_cov_35.429967:1-428 changes to pilon.changes [pilon] Writing updated NODE_7784_length_428_cov_35.429967_pilon to pilon.fasta [pilon] Writing NODE_7785_length_428_cov_33.250814:1-428 changes to pilon.changes [pilon] Writing updated NODE_7785_length_428_cov_33.250814_pilon to pilon.fasta [pilon] Writing NODE_7786_length_428_cov_32.752443:1-428 changes to pilon.changes [pilon] Writing updated NODE_7786_length_428_cov_32.752443_pilon to pilon.fasta [pilon] Writing NODE_7787_length_428_cov_19.400651:1-428 changes to pilon.changes [pilon] Writing updated NODE_7787_length_428_cov_19.400651_pilon to pilon.fasta [pilon] Writing NODE_7788_length_428_cov_14.205212:1-428 changes to pilon.changes [pilon] Writing updated NODE_7788_length_428_cov_14.205212_pilon to pilon.fasta [pilon] Writing NODE_7789_length_428_cov_11.162866:1-428 changes to pilon.changes [pilon] Writing updated NODE_7789_length_428_cov_11.162866_pilon to pilon.fasta [pilon] Writing NODE_7790_length_428_cov_10.918567:1-428 changes to pilon.changes [pilon] Writing updated NODE_7790_length_428_cov_10.918567_pilon to pilon.fasta [pilon] Writing NODE_7791_length_428_cov_8.104235:1-428 changes to pilon.changes [pilon] Writing updated NODE_7791_length_428_cov_8.104235_pilon to pilon.fasta [pilon] Writing NODE_7792_length_428_cov_3.061889:1-428 changes to pilon.changes [pilon] Writing updated NODE_7792_length_428_cov_3.061889_pilon to pilon.fasta [pilon] Writing NODE_7793_length_428_cov_2.586319:1-428 changes to pilon.changes [pilon] Writing updated NODE_7793_length_428_cov_2.586319_pilon to pilon.fasta [pilon] Writing NODE_7794_length_428_cov_2.263844:1-428 changes to pilon.changes [pilon] Writing updated NODE_7794_length_428_cov_2.263844_pilon to pilon.fasta [pilon] Writing NODE_7795_length_428_cov_0.944625:1-428 changes to pilon.changes [pilon] Writing updated NODE_7795_length_428_cov_0.944625_pilon to pilon.fasta [pilon] Writing NODE_7796_length_428_cov_0.745928:1-428 changes to pilon.changes [pilon] Writing updated NODE_7796_length_428_cov_0.745928_pilon to pilon.fasta [pilon] Writing NODE_7797_length_428_cov_0.644951:1-428 changes to pilon.changes [pilon] Writing updated NODE_7797_length_428_cov_0.644951_pilon to pilon.fasta [pilon] Writing NODE_7798_length_428_cov_0.631922:1-428 changes to pilon.changes [pilon] Writing updated NODE_7798_length_428_cov_0.631922_pilon to pilon.fasta [pilon] Writing NODE_7799_length_427_cov_68.127451:1-427 changes to pilon.changes [pilon] Writing updated NODE_7799_length_427_cov_68.127451_pilon to pilon.fasta [pilon] Writing NODE_7800_length_427_cov_67.986928:1-427 changes to pilon.changes [pilon] Writing updated NODE_7800_length_427_cov_67.986928_pilon to pilon.fasta [pilon] Writing NODE_7801_length_427_cov_21.163399:1-427 changes to pilon.changes [pilon] Writing updated NODE_7801_length_427_cov_21.163399_pilon to pilon.fasta [pilon] Writing NODE_7802_length_427_cov_20.588235:1-427 changes to pilon.changes [pilon] Writing updated NODE_7802_length_427_cov_20.588235_pilon to pilon.fasta [pilon] Writing NODE_7803_length_427_cov_16.506536:1-427 changes to pilon.changes [pilon] Writing updated NODE_7803_length_427_cov_16.506536_pilon to pilon.fasta [pilon] Writing NODE_7804_length_427_cov_13.565359:1-427 changes to pilon.changes [pilon] Writing updated NODE_7804_length_427_cov_13.565359_pilon to pilon.fasta [pilon] Writing NODE_7805_length_427_cov_2.542484:1-427 changes to pilon.changes [pilon] Writing updated NODE_7805_length_427_cov_2.542484_pilon to pilon.fasta [pilon] Writing NODE_7806_length_427_cov_1.052288:1-427 changes to pilon.changes [pilon] Writing updated NODE_7806_length_427_cov_1.052288_pilon to pilon.fasta [pilon] Writing NODE_7807_length_427_cov_1.049020:1-427 changes to pilon.changes [pilon] Writing updated NODE_7807_length_427_cov_1.049020_pilon to pilon.fasta [pilon] Writing NODE_7808_length_427_cov_0.905229:1-427 changes to pilon.changes [pilon] Writing updated NODE_7808_length_427_cov_0.905229_pilon to pilon.fasta [pilon] Writing NODE_7809_length_427_cov_0.656863:1-427 changes to pilon.changes [pilon] Writing updated NODE_7809_length_427_cov_0.656863_pilon to pilon.fasta [pilon] Writing NODE_7810_length_426_cov_35.681967:1-426 changes to pilon.changes [pilon] Writing updated NODE_7810_length_426_cov_35.681967_pilon to pilon.fasta [pilon] Writing NODE_7811_length_426_cov_32.773770:1-426 changes to pilon.changes [pilon] Writing updated NODE_7811_length_426_cov_32.773770_pilon to pilon.fasta [pilon] Writing NODE_7812_length_426_cov_31.747541:1-426 changes to pilon.changes [pilon] Writing updated NODE_7812_length_426_cov_31.747541_pilon to pilon.fasta [pilon] Writing NODE_7813_length_426_cov_26.111475:1-426 changes to pilon.changes [pilon] Writing updated NODE_7813_length_426_cov_26.111475_pilon to pilon.fasta [pilon] Writing NODE_7814_length_426_cov_24.685246:1-426 changes to pilon.changes [pilon] Writing updated NODE_7814_length_426_cov_24.685246_pilon to pilon.fasta [pilon] Writing NODE_7815_length_426_cov_23.813115:1-426 changes to pilon.changes [pilon] Writing updated NODE_7815_length_426_cov_23.813115_pilon to pilon.fasta [pilon] Writing NODE_7816_length_426_cov_23.563934:1-426 changes to pilon.changes [pilon] Writing updated NODE_7816_length_426_cov_23.563934_pilon to pilon.fasta [pilon] Writing NODE_7817_length_426_cov_22.163934:1-426 changes to pilon.changes [pilon] Writing updated NODE_7817_length_426_cov_22.163934_pilon to pilon.fasta [pilon] Writing NODE_7818_length_426_cov_19.757377:1-426 changes to pilon.changes [pilon] Writing updated NODE_7818_length_426_cov_19.757377_pilon to pilon.fasta [pilon] Writing NODE_7819_length_426_cov_18.186885:1-426 changes to pilon.changes [pilon] Writing updated NODE_7819_length_426_cov_18.186885_pilon to pilon.fasta [pilon] Writing NODE_7820_length_426_cov_18.147541:1-426 changes to pilon.changes [pilon] Writing updated NODE_7820_length_426_cov_18.147541_pilon to pilon.fasta [pilon] Writing NODE_7821_length_426_cov_17.331148:1-426 changes to pilon.changes [pilon] Writing updated NODE_7821_length_426_cov_17.331148_pilon to pilon.fasta [pilon] Writing NODE_7822_length_426_cov_17.226230:1-426 changes to pilon.changes [pilon] Writing updated NODE_7822_length_426_cov_17.226230_pilon to pilon.fasta [pilon] Writing NODE_7823_length_426_cov_16.124590:1-426 changes to pilon.changes [pilon] Writing updated NODE_7823_length_426_cov_16.124590_pilon to pilon.fasta [pilon] Writing NODE_7824_length_426_cov_14.403279:1-426 changes to pilon.changes [pilon] Writing updated NODE_7824_length_426_cov_14.403279_pilon to pilon.fasta [pilon] Writing NODE_7825_length_426_cov_13.459016:1-426 changes to pilon.changes [pilon] Writing updated NODE_7825_length_426_cov_13.459016_pilon to pilon.fasta [pilon] Writing NODE_7826_length_426_cov_11.888525:1-426 changes to pilon.changes [pilon] Writing updated NODE_7826_length_426_cov_11.888525_pilon to pilon.fasta [pilon] Writing NODE_7827_length_426_cov_10.718033:1-426 changes to pilon.changes [pilon] Writing updated NODE_7827_length_426_cov_10.718033_pilon to pilon.fasta [pilon] Writing NODE_7828_length_426_cov_9.180328:1-426 changes to pilon.changes [pilon] Writing updated NODE_7828_length_426_cov_9.180328_pilon to pilon.fasta [pilon] Writing NODE_7829_length_426_cov_8.295082:1-426 changes to pilon.changes [pilon] Writing updated NODE_7829_length_426_cov_8.295082_pilon to pilon.fasta [pilon] Writing NODE_7830_length_426_cov_4.852459:1-426 changes to pilon.changes [pilon] Writing updated NODE_7830_length_426_cov_4.852459_pilon to pilon.fasta [pilon] Writing NODE_7831_length_426_cov_4.144262:1-426 changes to pilon.changes [pilon] Writing updated NODE_7831_length_426_cov_4.144262_pilon to pilon.fasta [pilon] Writing NODE_7832_length_426_cov_0.921311:1-426 changes to pilon.changes [pilon] Writing updated NODE_7832_length_426_cov_0.921311_pilon to pilon.fasta [pilon] Writing NODE_7833_length_426_cov_0.826230:1-426 changes to pilon.changes [pilon] Writing updated NODE_7833_length_426_cov_0.826230_pilon to pilon.fasta [pilon] Writing NODE_7834_length_426_cov_0.708197:1-426 changes to pilon.changes [pilon] Writing updated NODE_7834_length_426_cov_0.708197_pilon to pilon.fasta [pilon] Writing NODE_7835_length_426_cov_0.636066:1-426 changes to pilon.changes [pilon] Writing updated NODE_7835_length_426_cov_0.636066_pilon to pilon.fasta [pilon] Writing NODE_7836_length_425_cov_50.907895:1-425 changes to pilon.changes [pilon] Writing updated NODE_7836_length_425_cov_50.907895_pilon to pilon.fasta [pilon] Writing NODE_7837_length_425_cov_40.664474:1-425 changes to pilon.changes [pilon] Writing updated NODE_7837_length_425_cov_40.664474_pilon to pilon.fasta [pilon] Writing NODE_7838_length_425_cov_35.194079:1-425 changes to pilon.changes [pilon] Writing updated NODE_7838_length_425_cov_35.194079_pilon to pilon.fasta [pilon] Writing NODE_7839_length_425_cov_26.062500:1-425 changes to pilon.changes [pilon] Writing updated NODE_7839_length_425_cov_26.062500_pilon to pilon.fasta [pilon] Writing NODE_7840_length_425_cov_17.184211:1-425 changes to pilon.changes [pilon] Writing updated NODE_7840_length_425_cov_17.184211_pilon to pilon.fasta [pilon] Writing NODE_7841_length_425_cov_17.000000:1-425 changes to pilon.changes [pilon] Writing updated NODE_7841_length_425_cov_17.000000_pilon to pilon.fasta [pilon] Writing NODE_7842_length_425_cov_14.671053:1-425 changes to pilon.changes [pilon] Writing updated NODE_7842_length_425_cov_14.671053_pilon to pilon.fasta [pilon] Writing NODE_7843_length_425_cov_13.434211:1-425 changes to pilon.changes [pilon] Writing updated NODE_7843_length_425_cov_13.434211_pilon to pilon.fasta [pilon] Writing NODE_7844_length_425_cov_13.299342:1-425 changes to pilon.changes [pilon] Writing updated NODE_7844_length_425_cov_13.299342_pilon to pilon.fasta [pilon] Writing NODE_7845_length_425_cov_11.434211:1-425 changes to pilon.changes [pilon] Writing updated NODE_7845_length_425_cov_11.434211_pilon to pilon.fasta [pilon] Writing NODE_7846_length_425_cov_10.052632:1-425 changes to pilon.changes [pilon] Writing updated NODE_7846_length_425_cov_10.052632_pilon to pilon.fasta [pilon] Writing NODE_7847_length_425_cov_9.851974:1-425 changes to pilon.changes [pilon] Writing updated NODE_7847_length_425_cov_9.851974_pilon to pilon.fasta [pilon] Writing NODE_7848_length_425_cov_9.546053:1-425 changes to pilon.changes [pilon] Writing updated NODE_7848_length_425_cov_9.546053_pilon to pilon.fasta [pilon] Writing NODE_7849_length_425_cov_8.256579:1-425 changes to pilon.changes [pilon] Writing updated NODE_7849_length_425_cov_8.256579_pilon to pilon.fasta [pilon] Writing NODE_7850_length_425_cov_4.796053:1-425 changes to pilon.changes [pilon] Writing updated NODE_7850_length_425_cov_4.796053_pilon to pilon.fasta [pilon] Writing NODE_7851_length_425_cov_3.700658:1-425 changes to pilon.changes [pilon] Writing updated NODE_7851_length_425_cov_3.700658_pilon to pilon.fasta [pilon] Writing NODE_7852_length_425_cov_2.575658:1-425 changes to pilon.changes [pilon] Writing updated NODE_7852_length_425_cov_2.575658_pilon to pilon.fasta [pilon] Writing NODE_7853_length_425_cov_2.368421:1-425 changes to pilon.changes [pilon] Writing updated NODE_7853_length_425_cov_2.368421_pilon to pilon.fasta [pilon] Writing NODE_7854_length_425_cov_2.023026:1-425 changes to pilon.changes [pilon] Writing updated NODE_7854_length_425_cov_2.023026_pilon to pilon.fasta [pilon] Writing NODE_7855_length_425_cov_1.138158:1-425 changes to pilon.changes [pilon] Writing updated NODE_7855_length_425_cov_1.138158_pilon to pilon.fasta [pilon] Writing NODE_7856_length_425_cov_0.838816:1-425 changes to pilon.changes [pilon] Writing updated NODE_7856_length_425_cov_0.838816_pilon to pilon.fasta [pilon] Writing NODE_7857_length_425_cov_0.713816:1-425 changes to pilon.changes [pilon] Writing updated NODE_7857_length_425_cov_0.713816_pilon to pilon.fasta [pilon] Writing NODE_7858_length_424_cov_66.940594:1-424 changes to pilon.changes [pilon] Writing updated NODE_7858_length_424_cov_66.940594_pilon to pilon.fasta [pilon] Writing NODE_7859_length_424_cov_65.587459:1-424 changes to pilon.changes [pilon] Writing updated NODE_7859_length_424_cov_65.587459_pilon to pilon.fasta [pilon] Writing NODE_7860_length_424_cov_26.844884:1-424 changes to pilon.changes [pilon] Writing updated NODE_7860_length_424_cov_26.844884_pilon to pilon.fasta [pilon] Writing NODE_7861_length_424_cov_22.676568:1-424 changes to pilon.changes [pilon] Writing updated NODE_7861_length_424_cov_22.676568_pilon to pilon.fasta [pilon] Writing NODE_7862_length_424_cov_22.221122:1-424 changes to pilon.changes [pilon] Writing updated NODE_7862_length_424_cov_22.221122_pilon to pilon.fasta [pilon] Writing NODE_7863_length_424_cov_22.151815:1-424 changes to pilon.changes [pilon] Writing updated NODE_7863_length_424_cov_22.151815_pilon to pilon.fasta [pilon] Writing NODE_7864_length_424_cov_18.366337:1-424 changes to pilon.changes [pilon] Writing updated NODE_7864_length_424_cov_18.366337_pilon to pilon.fasta [pilon] Writing NODE_7865_length_424_cov_16.089109:1-424 changes to pilon.changes [pilon] Writing updated NODE_7865_length_424_cov_16.089109_pilon to pilon.fasta [pilon] Writing NODE_7866_length_424_cov_14.214521:1-424 changes to pilon.changes [pilon] Writing updated NODE_7866_length_424_cov_14.214521_pilon to pilon.fasta [pilon] Writing NODE_7867_length_424_cov_8.782178:1-424 changes to pilon.changes [pilon] Writing updated NODE_7867_length_424_cov_8.782178_pilon to pilon.fasta [pilon] Writing NODE_7868_length_424_cov_2.191419:1-424 changes to pilon.changes [pilon] Writing updated NODE_7868_length_424_cov_2.191419_pilon to pilon.fasta [pilon] Writing NODE_7869_length_424_cov_1.963696:1-424 changes to pilon.changes [pilon] Writing updated NODE_7869_length_424_cov_1.963696_pilon to pilon.fasta [pilon] Writing NODE_7870_length_424_cov_1.118812:1-424 changes to pilon.changes [pilon] Writing updated NODE_7870_length_424_cov_1.118812_pilon to pilon.fasta [pilon] Writing NODE_7871_length_424_cov_1.118812:1-424 changes to pilon.changes [pilon] Writing updated NODE_7871_length_424_cov_1.118812_pilon to pilon.fasta [pilon] Writing NODE_7872_length_424_cov_0.966997:1-424 changes to pilon.changes [pilon] Writing updated NODE_7872_length_424_cov_0.966997_pilon to pilon.fasta [pilon] Writing NODE_7873_length_424_cov_0.933993:1-424 changes to pilon.changes [pilon] Writing updated NODE_7873_length_424_cov_0.933993_pilon to pilon.fasta [pilon] Writing NODE_7874_length_424_cov_0.881188:1-424 changes to pilon.changes [pilon] Writing updated NODE_7874_length_424_cov_0.881188_pilon to pilon.fasta [pilon] Writing NODE_7875_length_424_cov_0.815182:1-424 changes to pilon.changes [pilon] Writing updated NODE_7875_length_424_cov_0.815182_pilon to pilon.fasta [pilon] Writing NODE_7876_length_424_cov_0.597360:1-424 changes to pilon.changes [pilon] Writing updated NODE_7876_length_424_cov_0.597360_pilon to pilon.fasta [pilon] Writing NODE_7877_length_423_cov_51.334437:1-423 changes to pilon.changes [pilon] Writing updated NODE_7877_length_423_cov_51.334437_pilon to pilon.fasta [pilon] Writing NODE_7878_length_423_cov_47.476821:1-423 changes to pilon.changes [pilon] Writing updated NODE_7878_length_423_cov_47.476821_pilon to pilon.fasta [pilon] Writing NODE_7879_length_423_cov_33.596026:1-423 changes to pilon.changes [pilon] Writing updated NODE_7879_length_423_cov_33.596026_pilon to pilon.fasta [pilon] Writing NODE_7880_length_423_cov_33.374172:1-423 changes to pilon.changes [pilon] Writing updated NODE_7880_length_423_cov_33.374172_pilon to pilon.fasta [pilon] Writing NODE_7881_length_423_cov_33.013245:1-423 changes to pilon.changes [pilon] Writing updated NODE_7881_length_423_cov_33.013245_pilon to pilon.fasta [pilon] Writing NODE_7882_length_423_cov_31.036424:1-423 changes to pilon.changes [pilon] Writing updated NODE_7882_length_423_cov_31.036424_pilon to pilon.fasta [pilon] Writing NODE_7883_length_423_cov_28.288079:1-423 changes to pilon.changes [pilon] Writing updated NODE_7883_length_423_cov_28.288079_pilon to pilon.fasta [pilon] Writing NODE_7884_length_423_cov_25.831126:1-423 changes to pilon.changes [pilon] Writing updated NODE_7884_length_423_cov_25.831126_pilon to pilon.fasta [pilon] Writing NODE_7885_length_423_cov_25.374172:1-423 changes to pilon.changes [pilon] Writing updated NODE_7885_length_423_cov_25.374172_pilon to pilon.fasta [pilon] Writing NODE_7886_length_423_cov_25.109272:1-423 changes to pilon.changes [pilon] Writing updated NODE_7886_length_423_cov_25.109272_pilon to pilon.fasta [pilon] Writing NODE_7887_length_423_cov_23.294702:1-423 changes to pilon.changes [pilon] Writing updated NODE_7887_length_423_cov_23.294702_pilon to pilon.fasta [pilon] Writing NODE_7888_length_423_cov_22.142384:1-423 changes to pilon.changes [pilon] Writing updated NODE_7888_length_423_cov_22.142384_pilon to pilon.fasta [pilon] Writing NODE_7889_length_423_cov_20.430464:1-423 changes to pilon.changes [pilon] Writing updated NODE_7889_length_423_cov_20.430464_pilon to pilon.fasta [pilon] Writing NODE_7890_length_423_cov_19.894040:1-423 changes to pilon.changes [pilon] Writing updated NODE_7890_length_423_cov_19.894040_pilon to pilon.fasta [pilon] Writing NODE_7891_length_423_cov_17.966887:1-423 changes to pilon.changes [pilon] Writing updated NODE_7891_length_423_cov_17.966887_pilon to pilon.fasta [pilon] Writing NODE_7892_length_423_cov_17.258278:1-423 changes to pilon.changes [pilon] Writing updated NODE_7892_length_423_cov_17.258278_pilon to pilon.fasta [pilon] Writing NODE_7893_length_423_cov_16.380795:1-423 changes to pilon.changes [pilon] Writing updated NODE_7893_length_423_cov_16.380795_pilon to pilon.fasta [pilon] Writing NODE_7894_length_423_cov_15.771523:1-423 changes to pilon.changes [pilon] Writing updated NODE_7894_length_423_cov_15.771523_pilon to pilon.fasta [pilon] Writing NODE_7895_length_423_cov_13.519868:1-423 changes to pilon.changes [pilon] Writing updated NODE_7895_length_423_cov_13.519868_pilon to pilon.fasta [pilon] Writing NODE_7896_length_423_cov_11.761589:1-423 changes to pilon.changes [pilon] Writing updated NODE_7896_length_423_cov_11.761589_pilon to pilon.fasta [pilon] Writing NODE_7897_length_423_cov_8.923841:1-423 changes to pilon.changes [pilon] Writing updated NODE_7897_length_423_cov_8.923841_pilon to pilon.fasta [pilon] Writing NODE_7898_length_423_cov_8.354305:1-423 changes to pilon.changes [pilon] Writing updated NODE_7898_length_423_cov_8.354305_pilon to pilon.fasta [pilon] Writing NODE_7899_length_423_cov_7.261589:1-423 changes to pilon.changes [pilon] Writing updated NODE_7899_length_423_cov_7.261589_pilon to pilon.fasta [pilon] Writing NODE_7900_length_423_cov_2.394040:1-423 changes to pilon.changes [pilon] Writing updated NODE_7900_length_423_cov_2.394040_pilon to pilon.fasta [pilon] Writing NODE_7901_length_423_cov_2.043046:1-423 changes to pilon.changes [pilon] Writing updated NODE_7901_length_423_cov_2.043046_pilon to pilon.fasta [pilon] Writing NODE_7902_length_423_cov_1.672185:1-423 changes to pilon.changes [pilon] Writing updated NODE_7902_length_423_cov_1.672185_pilon to pilon.fasta [pilon] Writing NODE_7903_length_423_cov_1.480132:1-423 changes to pilon.changes [pilon] Writing updated NODE_7903_length_423_cov_1.480132_pilon to pilon.fasta [pilon] Writing NODE_7904_length_423_cov_1.321192:1-423 changes to pilon.changes [pilon] Writing updated NODE_7904_length_423_cov_1.321192_pilon to pilon.fasta [pilon] Writing NODE_7905_length_423_cov_1.062914:1-423 changes to pilon.changes [pilon] Writing updated NODE_7905_length_423_cov_1.062914_pilon to pilon.fasta [pilon] Writing NODE_7906_length_423_cov_0.993377:1-423 changes to pilon.changes [pilon] Writing updated NODE_7906_length_423_cov_0.993377_pilon to pilon.fasta [pilon] Writing NODE_7907_length_423_cov_0.788079:1-423 changes to pilon.changes [pilon] Writing updated NODE_7907_length_423_cov_0.788079_pilon to pilon.fasta [pilon] Writing NODE_7908_length_423_cov_0.764901:1-423 changes to pilon.changes [pilon] Writing updated NODE_7908_length_423_cov_0.764901_pilon to pilon.fasta [pilon] Writing NODE_7909_length_422_cov_61.425249:1-422 changes to pilon.changes [pilon] Writing updated NODE_7909_length_422_cov_61.425249_pilon to pilon.fasta [pilon] Writing NODE_7910_length_422_cov_57.438538:1-422 changes to pilon.changes [pilon] Writing updated NODE_7910_length_422_cov_57.438538_pilon to pilon.fasta [pilon] Writing NODE_7911_length_422_cov_44.162791:1-422 changes to pilon.changes [pilon] Writing updated NODE_7911_length_422_cov_44.162791_pilon to pilon.fasta [pilon] Writing NODE_7912_length_422_cov_29.189369:1-422 changes to pilon.changes [pilon] Writing updated NODE_7912_length_422_cov_29.189369_pilon to pilon.fasta [pilon] Writing NODE_7913_length_422_cov_24.524917:1-422 changes to pilon.changes [pilon] Writing updated NODE_7913_length_422_cov_24.524917_pilon to pilon.fasta [pilon] Writing NODE_7914_length_422_cov_22.900332:1-422 changes to pilon.changes [pilon] Writing updated NODE_7914_length_422_cov_22.900332_pilon to pilon.fasta [pilon] Writing NODE_7915_length_422_cov_22.754153:1-422 changes to pilon.changes [pilon] Writing updated NODE_7915_length_422_cov_22.754153_pilon to pilon.fasta [pilon] Writing NODE_7916_length_422_cov_20.415282:1-422 changes to pilon.changes [pilon] Writing updated NODE_7916_length_422_cov_20.415282_pilon to pilon.fasta [pilon] Writing NODE_7917_length_422_cov_13.983389:1-422 changes to pilon.changes [pilon] Writing updated NODE_7917_length_422_cov_13.983389_pilon to pilon.fasta [pilon] Writing NODE_7918_length_422_cov_13.970100:1-422 changes to pilon.changes [pilon] Writing updated NODE_7918_length_422_cov_13.970100_pilon to pilon.fasta [pilon] Writing NODE_7919_length_422_cov_12.744186:1-422 changes to pilon.changes [pilon] Writing updated NODE_7919_length_422_cov_12.744186_pilon to pilon.fasta [pilon] Writing NODE_7920_length_422_cov_12.548173:1-422 changes to pilon.changes [pilon] Writing updated NODE_7920_length_422_cov_12.548173_pilon to pilon.fasta [pilon] Writing NODE_7921_length_422_cov_11.149502:1-422 changes to pilon.changes [pilon] Writing updated NODE_7921_length_422_cov_11.149502_pilon to pilon.fasta [pilon] Writing NODE_7922_length_422_cov_3.767442:1-422 changes to pilon.changes [pilon] Writing updated NODE_7922_length_422_cov_3.767442_pilon to pilon.fasta [pilon] Writing NODE_7923_length_422_cov_1.710963:1-422 changes to pilon.changes [pilon] Writing updated NODE_7923_length_422_cov_1.710963_pilon to pilon.fasta [pilon] Writing NODE_7924_length_422_cov_0.840532:1-422 changes to pilon.changes [pilon] Writing updated NODE_7924_length_422_cov_0.840532_pilon to pilon.fasta [pilon] Writing NODE_7925_length_422_cov_0.697674:1-422 changes to pilon.changes [pilon] Writing updated NODE_7925_length_422_cov_0.697674_pilon to pilon.fasta [pilon] Writing NODE_7926_length_421_cov_52.250000:1-421 changes to pilon.changes [pilon] Writing updated NODE_7926_length_421_cov_52.250000_pilon to pilon.fasta [pilon] Writing NODE_7927_length_421_cov_51.550000:1-421 changes to pilon.changes [pilon] Writing updated NODE_7927_length_421_cov_51.550000_pilon to pilon.fasta [pilon] Writing NODE_7928_length_421_cov_34.780000:1-421 changes to pilon.changes [pilon] Writing updated NODE_7928_length_421_cov_34.780000_pilon to pilon.fasta [pilon] Writing NODE_7929_length_421_cov_31.356667:1-421 changes to pilon.changes [pilon] Writing updated NODE_7929_length_421_cov_31.356667_pilon to pilon.fasta [pilon] Writing NODE_7930_length_421_cov_26.250000:1-421 changes to pilon.changes [pilon] Writing updated NODE_7930_length_421_cov_26.250000_pilon to pilon.fasta [pilon] Writing NODE_7931_length_421_cov_25.686667:1-421 changes to pilon.changes [pilon] Writing updated NODE_7931_length_421_cov_25.686667_pilon to pilon.fasta [pilon] Writing NODE_7932_length_421_cov_22.360000:1-421 changes to pilon.changes [pilon] Writing updated NODE_7932_length_421_cov_22.360000_pilon to pilon.fasta [pilon] Writing NODE_7933_length_421_cov_21.906667:1-421 changes to pilon.changes [pilon] Writing updated NODE_7933_length_421_cov_21.906667_pilon to pilon.fasta [pilon] Writing NODE_7934_length_421_cov_13.506667:1-421 changes to pilon.changes [pilon] Writing updated NODE_7934_length_421_cov_13.506667_pilon to pilon.fasta [pilon] Writing NODE_7935_length_421_cov_11.266667:1-421 changes to pilon.changes [pilon] Writing updated NODE_7935_length_421_cov_11.266667_pilon to pilon.fasta [pilon] Writing NODE_7936_length_421_cov_0.753333:1-421 changes to pilon.changes [pilon] Writing updated NODE_7936_length_421_cov_0.753333_pilon to pilon.fasta [pilon] Writing NODE_7937_length_421_cov_0.680000:1-421 changes to pilon.changes [pilon] Writing updated NODE_7937_length_421_cov_0.680000_pilon to pilon.fasta [pilon] Writing NODE_7938_length_421_cov_0.356667:1-421 changes to pilon.changes [pilon] Writing updated NODE_7938_length_421_cov_0.356667_pilon to pilon.fasta [pilon] Writing NODE_7939_length_420_cov_36.685619:1-420 changes to pilon.changes [pilon] Writing updated NODE_7939_length_420_cov_36.685619_pilon to pilon.fasta [pilon] Writing NODE_7940_length_420_cov_31.618729:1-420 changes to pilon.changes [pilon] Writing updated NODE_7940_length_420_cov_31.618729_pilon to pilon.fasta [pilon] Writing NODE_7941_length_420_cov_28.752508:1-420 changes to pilon.changes [pilon] Writing updated NODE_7941_length_420_cov_28.752508_pilon to pilon.fasta [pilon] Writing NODE_7942_length_420_cov_28.655518:1-420 changes to pilon.changes [pilon] Writing updated NODE_7942_length_420_cov_28.655518_pilon to pilon.fasta [pilon] Writing NODE_7943_length_420_cov_22.642140:1-420 changes to pilon.changes [pilon] Writing updated NODE_7943_length_420_cov_22.642140_pilon to pilon.fasta [pilon] Writing NODE_7944_length_420_cov_22.508361:1-420 changes to pilon.changes [pilon] Writing updated NODE_7944_length_420_cov_22.508361_pilon to pilon.fasta [pilon] Writing NODE_7945_length_420_cov_22.083612:1-420 changes to pilon.changes [pilon] Writing updated NODE_7945_length_420_cov_22.083612_pilon to pilon.fasta [pilon] Writing NODE_7946_length_420_cov_21.685619:1-420 changes to pilon.changes [pilon] Writing updated NODE_7946_length_420_cov_21.685619_pilon to pilon.fasta [pilon] Writing NODE_7947_length_420_cov_21.317726:1-420 changes to pilon.changes [pilon] Writing updated NODE_7947_length_420_cov_21.317726_pilon to pilon.fasta [pilon] Writing NODE_7948_length_420_cov_21.317726:1-420 changes to pilon.changes [pilon] Writing updated NODE_7948_length_420_cov_21.317726_pilon to pilon.fasta [pilon] Writing NODE_7949_length_420_cov_18.658863:1-420 changes to pilon.changes [pilon] Writing updated NODE_7949_length_420_cov_18.658863_pilon to pilon.fasta [pilon] Writing NODE_7950_length_420_cov_18.565217:1-420 changes to pilon.changes [pilon] Writing updated NODE_7950_length_420_cov_18.565217_pilon to pilon.fasta [pilon] Writing NODE_7951_length_420_cov_17.548495:1-420 changes to pilon.changes [pilon] Writing updated NODE_7951_length_420_cov_17.548495_pilon to pilon.fasta [pilon] Writing NODE_7952_length_420_cov_16.782609:1-420 changes to pilon.changes [pilon] Writing updated NODE_7952_length_420_cov_16.782609_pilon to pilon.fasta [pilon] Writing NODE_7953_length_420_cov_16.414716:1-420 changes to pilon.changes [pilon] Writing updated NODE_7953_length_420_cov_16.414716_pilon to pilon.fasta [pilon] Writing NODE_7954_length_420_cov_14.896321:1-420 changes to pilon.changes [pilon] Writing updated NODE_7954_length_420_cov_14.896321_pilon to pilon.fasta [pilon] Writing NODE_7955_length_420_cov_14.561873:1-420 changes to pilon.changes [pilon] Writing updated NODE_7955_length_420_cov_14.561873_pilon to pilon.fasta [pilon] Writing NODE_7956_length_420_cov_13.478261:1-420 changes to pilon.changes [pilon] Writing updated NODE_7956_length_420_cov_13.478261_pilon to pilon.fasta [pilon] Writing NODE_7957_length_420_cov_12.662207:1-420 changes to pilon.changes [pilon] Writing updated NODE_7957_length_420_cov_12.662207_pilon to pilon.fasta [pilon] Writing NODE_7958_length_420_cov_12.401338:1-420 changes to pilon.changes [pilon] Writing updated NODE_7958_length_420_cov_12.401338_pilon to pilon.fasta [pilon] Writing NODE_7959_length_420_cov_11.745819:1-420 changes to pilon.changes [pilon] Writing updated NODE_7959_length_420_cov_11.745819_pilon to pilon.fasta [pilon] Writing NODE_7960_length_420_cov_11.558528:1-420 changes to pilon.changes [pilon] Writing updated NODE_7960_length_420_cov_11.558528_pilon to pilon.fasta [pilon] Writing NODE_7961_length_420_cov_10.193980:1-420 changes to pilon.changes [pilon] Writing updated NODE_7961_length_420_cov_10.193980_pilon to pilon.fasta [pilon] Writing NODE_7962_length_420_cov_7.923077:1-420 changes to pilon.changes [pilon] Writing updated NODE_7962_length_420_cov_7.923077_pilon to pilon.fasta [pilon] Writing NODE_7963_length_420_cov_7.464883:1-420 changes to pilon.changes [pilon] Writing updated NODE_7963_length_420_cov_7.464883_pilon to pilon.fasta [pilon] Writing NODE_7964_length_420_cov_7.056856:1-420 changes to pilon.changes [pilon] Writing updated NODE_7964_length_420_cov_7.056856_pilon to pilon.fasta [pilon] Writing NODE_7965_length_420_cov_3.143813:1-420 changes to pilon.changes [pilon] Writing updated NODE_7965_length_420_cov_3.143813_pilon to pilon.fasta [pilon] Writing NODE_7966_length_420_cov_1.381271:1-420 changes to pilon.changes [pilon] Writing updated NODE_7966_length_420_cov_1.381271_pilon to pilon.fasta [pilon] Writing NODE_7967_length_420_cov_1.327759:1-420 changes to pilon.changes [pilon] Writing updated NODE_7967_length_420_cov_1.327759_pilon to pilon.fasta [pilon] Writing NODE_7968_length_420_cov_0.528428:1-420 changes to pilon.changes [pilon] Writing updated NODE_7968_length_420_cov_0.528428_pilon to pilon.fasta [pilon] Writing NODE_7969_length_419_cov_65.140940:1-419 changes to pilon.changes [pilon] Writing updated NODE_7969_length_419_cov_65.140940_pilon to pilon.fasta [pilon] Writing NODE_7970_length_419_cov_57.375839:1-419 changes to pilon.changes [pilon] Writing updated NODE_7970_length_419_cov_57.375839_pilon to pilon.fasta [pilon] Writing NODE_7971_length_419_cov_35.644295:1-419 changes to pilon.changes [pilon] Writing updated NODE_7971_length_419_cov_35.644295_pilon to pilon.fasta [pilon] Writing NODE_7972_length_419_cov_35.567114:1-419 changes to pilon.changes [pilon] Writing updated NODE_7972_length_419_cov_35.567114_pilon to pilon.fasta [pilon] Writing NODE_7973_length_419_cov_33.946309:1-419 changes to pilon.changes [pilon] Writing updated NODE_7973_length_419_cov_33.946309_pilon to pilon.fasta [pilon] Writing NODE_7974_length_419_cov_30.134228:1-419 changes to pilon.changes [pilon] Writing updated NODE_7974_length_419_cov_30.134228_pilon to pilon.fasta [pilon] Writing NODE_7975_length_419_cov_25.342282:1-419 changes to pilon.changes [pilon] Writing updated NODE_7975_length_419_cov_25.342282_pilon to pilon.fasta [pilon] Writing NODE_7976_length_419_cov_24.624161:1-419 changes to pilon.changes [pilon] Writing updated NODE_7976_length_419_cov_24.624161_pilon to pilon.fasta [pilon] Writing NODE_7977_length_419_cov_22.318792:1-419 changes to pilon.changes [pilon] Writing updated NODE_7977_length_419_cov_22.318792_pilon to pilon.fasta [pilon] Writing NODE_7978_length_419_cov_19.107383:1-419 changes to pilon.changes [pilon] Writing updated NODE_7978_length_419_cov_19.107383_pilon to pilon.fasta [pilon] Writing NODE_7979_length_419_cov_15.171141:1-419 changes to pilon.changes [pilon] Writing updated NODE_7979_length_419_cov_15.171141_pilon to pilon.fasta [pilon] Writing NODE_7980_length_419_cov_12.825503:1-419 changes to pilon.changes [pilon] Writing updated NODE_7980_length_419_cov_12.825503_pilon to pilon.fasta [pilon] Writing NODE_7981_length_419_cov_11.134228:1-419 changes to pilon.changes [pilon] Writing updated NODE_7981_length_419_cov_11.134228_pilon to pilon.fasta [pilon] Writing NODE_7982_length_419_cov_10.057047:1-419 changes to pilon.changes [pilon] Writing updated NODE_7982_length_419_cov_10.057047_pilon to pilon.fasta [pilon] Writing NODE_7983_length_419_cov_9.345638:1-419 changes to pilon.changes [pilon] Writing updated NODE_7983_length_419_cov_9.345638_pilon to pilon.fasta [pilon] Writing NODE_7984_length_419_cov_6.570470:1-419 changes to pilon.changes [pilon] Writing updated NODE_7984_length_419_cov_6.570470_pilon to pilon.fasta [pilon] Writing NODE_7985_length_419_cov_2.288591:1-419 changes to pilon.changes [pilon] Writing updated NODE_7985_length_419_cov_2.288591_pilon to pilon.fasta [pilon] Writing NODE_7986_length_419_cov_1.607383:1-419 changes to pilon.changes [pilon] Writing updated NODE_7986_length_419_cov_1.607383_pilon to pilon.fasta [pilon] Writing NODE_7987_length_419_cov_1.372483:1-419 changes to pilon.changes [pilon] Writing updated NODE_7987_length_419_cov_1.372483_pilon to pilon.fasta [pilon] Writing NODE_7988_length_419_cov_1.191275:1-419 changes to pilon.changes [pilon] Writing updated NODE_7988_length_419_cov_1.191275_pilon to pilon.fasta [pilon] Writing NODE_7989_length_419_cov_1.187919:1-419 changes to pilon.changes [pilon] Writing updated NODE_7989_length_419_cov_1.187919_pilon to pilon.fasta [pilon] Writing NODE_7990_length_419_cov_1.016779:1-419 changes to pilon.changes [pilon] Writing updated NODE_7990_length_419_cov_1.016779_pilon to pilon.fasta [pilon] Writing NODE_7991_length_419_cov_0.711409:1-419 changes to pilon.changes [pilon] Writing updated NODE_7991_length_419_cov_0.711409_pilon to pilon.fasta [pilon] Writing NODE_7992_length_419_cov_0.620805:1-419 changes to pilon.changes [pilon] Writing updated NODE_7992_length_419_cov_0.620805_pilon to pilon.fasta [pilon] Writing NODE_7993_length_419_cov_0.359060:1-419 changes to pilon.changes [pilon] Writing updated NODE_7993_length_419_cov_0.359060_pilon to pilon.fasta [pilon] Writing NODE_7994_length_418_cov_64.976431:1-418 changes to pilon.changes [pilon] Writing updated NODE_7994_length_418_cov_64.976431_pilon to pilon.fasta [pilon] Writing NODE_7995_length_418_cov_33.478114:1-418 changes to pilon.changes [pilon] Writing updated NODE_7995_length_418_cov_33.478114_pilon to pilon.fasta [pilon] Writing NODE_7996_length_418_cov_27.265993:1-418 changes to pilon.changes [pilon] Writing updated NODE_7996_length_418_cov_27.265993_pilon to pilon.fasta [pilon] Writing NODE_7997_length_418_cov_20.589226:1-418 changes to pilon.changes [pilon] Writing updated NODE_7997_length_418_cov_20.589226_pilon to pilon.fasta [pilon] Writing NODE_7998_length_418_cov_18.478114:1-418 changes to pilon.changes [pilon] Writing updated NODE_7998_length_418_cov_18.478114_pilon to pilon.fasta [pilon] Writing NODE_7999_length_418_cov_14.649832:1-418 changes to pilon.changes [pilon] Writing updated NODE_7999_length_418_cov_14.649832_pilon to pilon.fasta [pilon] Writing NODE_8000_length_418_cov_14.303030:1-418 changes to pilon.changes [pilon] Writing updated NODE_8000_length_418_cov_14.303030_pilon to pilon.fasta [pilon] Writing NODE_8001_length_418_cov_12.851852:1-418 changes to pilon.changes [pilon] Writing updated NODE_8001_length_418_cov_12.851852_pilon to pilon.fasta [pilon] Writing NODE_8002_length_418_cov_8.636364:1-418 changes to pilon.changes [pilon] Writing updated NODE_8002_length_418_cov_8.636364_pilon to pilon.fasta [pilon] Writing NODE_8003_length_418_cov_6.525253:1-418 changes to pilon.changes [pilon] Writing updated NODE_8003_length_418_cov_6.525253_pilon to pilon.fasta [pilon] Writing NODE_8004_length_418_cov_6.407407:1-418 changes to pilon.changes [pilon] Writing updated NODE_8004_length_418_cov_6.407407_pilon to pilon.fasta [pilon] Writing NODE_8005_length_418_cov_2.306397:1-418 changes to pilon.changes [pilon] Writing updated NODE_8005_length_418_cov_2.306397_pilon to pilon.fasta [pilon] Writing NODE_8006_length_418_cov_1.730640:1-418 changes to pilon.changes [pilon] Writing updated NODE_8006_length_418_cov_1.730640_pilon to pilon.fasta [pilon] Writing NODE_8007_length_418_cov_1.636364:1-418 changes to pilon.changes [pilon] Writing updated NODE_8007_length_418_cov_1.636364_pilon to pilon.fasta [pilon] Writing NODE_8008_length_418_cov_1.299663:1-418 changes to pilon.changes [pilon] Writing updated NODE_8008_length_418_cov_1.299663_pilon to pilon.fasta [pilon] Writing NODE_8009_length_418_cov_1.013468:1-418 changes to pilon.changes [pilon] Writing updated NODE_8009_length_418_cov_1.013468_pilon to pilon.fasta [pilon] Writing NODE_8010_length_418_cov_0.946128:1-418 changes to pilon.changes [pilon] Writing updated NODE_8010_length_418_cov_0.946128_pilon to pilon.fasta [pilon] Writing NODE_8011_length_417_cov_52.057432:1-417 changes to pilon.changes [pilon] Writing updated NODE_8011_length_417_cov_52.057432_pilon to pilon.fasta [pilon] Writing NODE_8012_length_417_cov_37.932432:1-417 changes to pilon.changes [pilon] Writing updated NODE_8012_length_417_cov_37.932432_pilon to pilon.fasta [pilon] Writing NODE_8013_length_417_cov_34.405405:1-417 changes to pilon.changes [pilon] Writing updated NODE_8013_length_417_cov_34.405405_pilon to pilon.fasta [pilon] Writing NODE_8014_length_417_cov_30.202703:1-417 changes to pilon.changes [pilon] Writing updated NODE_8014_length_417_cov_30.202703_pilon to pilon.fasta [pilon] Writing NODE_8015_length_417_cov_28.260135:1-417 changes to pilon.changes [pilon] Writing updated NODE_8015_length_417_cov_28.260135_pilon to pilon.fasta [pilon] Writing NODE_8016_length_417_cov_28.209459:1-417 changes to pilon.changes [pilon] Writing updated NODE_8016_length_417_cov_28.209459_pilon to pilon.fasta [pilon] Writing NODE_8017_length_417_cov_26.908784:1-417 changes to pilon.changes [pilon] Writing updated NODE_8017_length_417_cov_26.908784_pilon to pilon.fasta [pilon] Writing NODE_8018_length_417_cov_26.189189:1-417 changes to pilon.changes [pilon] Writing updated NODE_8018_length_417_cov_26.189189_pilon to pilon.fasta [pilon] Writing NODE_8019_length_417_cov_26.050676:1-417 changes to pilon.changes [pilon] Writing updated NODE_8019_length_417_cov_26.050676_pilon to pilon.fasta [pilon] Writing NODE_8020_length_417_cov_23.574324:1-417 changes to pilon.changes [pilon] Writing updated NODE_8020_length_417_cov_23.574324_pilon to pilon.fasta [pilon] Writing NODE_8021_length_417_cov_22.506757:1-417 changes to pilon.changes [pilon] Writing updated NODE_8021_length_417_cov_22.506757_pilon to pilon.fasta [pilon] Writing NODE_8022_length_417_cov_20.621622:1-417 changes to pilon.changes [pilon] Writing updated NODE_8022_length_417_cov_20.621622_pilon to pilon.fasta [pilon] Writing NODE_8023_length_417_cov_19.689189:1-417 changes to pilon.changes [pilon] Writing updated NODE_8023_length_417_cov_19.689189_pilon to pilon.fasta [pilon] Writing NODE_8024_length_417_cov_18.070946:1-417 changes to pilon.changes [pilon] Writing updated NODE_8024_length_417_cov_18.070946_pilon to pilon.fasta [pilon] Writing NODE_8025_length_417_cov_18.000000:1-417 changes to pilon.changes [pilon] Writing updated NODE_8025_length_417_cov_18.000000_pilon to pilon.fasta [pilon] Writing NODE_8026_length_417_cov_17.895270:1-417 changes to pilon.changes [pilon] Writing updated NODE_8026_length_417_cov_17.895270_pilon to pilon.fasta [pilon] Writing NODE_8027_length_417_cov_17.679054:1-417 changes to pilon.changes [pilon] Writing updated NODE_8027_length_417_cov_17.679054_pilon to pilon.fasta [pilon] Writing NODE_8028_length_417_cov_17.266892:1-417 changes to pilon.changes [pilon] Writing updated NODE_8028_length_417_cov_17.266892_pilon to pilon.fasta [pilon] Writing NODE_8029_length_417_cov_13.314189:1-417 changes to pilon.changes [pilon] Writing updated NODE_8029_length_417_cov_13.314189_pilon to pilon.fasta [pilon] Writing NODE_8030_length_417_cov_10.949324:1-417 changes to pilon.changes [pilon] Writing updated NODE_8030_length_417_cov_10.949324_pilon to pilon.fasta [pilon] Writing NODE_8031_length_417_cov_10.861486:1-417 changes to pilon.changes [pilon] Writing updated NODE_8031_length_417_cov_10.861486_pilon to pilon.fasta [pilon] Writing NODE_8032_length_417_cov_9.199324:1-417 changes to pilon.changes [pilon] Writing updated NODE_8032_length_417_cov_9.199324_pilon to pilon.fasta [pilon] Writing NODE_8033_length_417_cov_5.905405:1-417 changes to pilon.changes [pilon] Writing updated NODE_8033_length_417_cov_5.905405_pilon to pilon.fasta [pilon] Writing NODE_8034_length_417_cov_4.689189:1-417 changes to pilon.changes [pilon] Writing updated NODE_8034_length_417_cov_4.689189_pilon to pilon.fasta [pilon] Writing NODE_8035_length_417_cov_0.868243:1-417 changes to pilon.changes [pilon] Writing updated NODE_8035_length_417_cov_0.868243_pilon to pilon.fasta [pilon] Writing NODE_8036_length_417_cov_0.597973:1-417 changes to pilon.changes [pilon] Writing updated NODE_8036_length_417_cov_0.597973_pilon to pilon.fasta [pilon] Writing NODE_8037_length_416_cov_39.494915:1-416 changes to pilon.changes [pilon] Writing updated NODE_8037_length_416_cov_39.494915_pilon to pilon.fasta [pilon] Writing NODE_8038_length_416_cov_26.216949:1-416 changes to pilon.changes [pilon] Writing updated NODE_8038_length_416_cov_26.216949_pilon to pilon.fasta [pilon] Writing NODE_8039_length_416_cov_22.267797:1-416 changes to pilon.changes [pilon] Writing updated NODE_8039_length_416_cov_22.267797_pilon to pilon.fasta [pilon] Writing NODE_8040_length_416_cov_17.569492:1-416 changes to pilon.changes [pilon] Writing updated NODE_8040_length_416_cov_17.569492_pilon to pilon.fasta [pilon] Writing NODE_8041_length_416_cov_15.172881:1-416 changes to pilon.changes [pilon] Writing updated NODE_8041_length_416_cov_15.172881_pilon to pilon.fasta [pilon] Writing NODE_8042_length_416_cov_4.986441:1-416 changes to pilon.changes [pilon] Writing updated NODE_8042_length_416_cov_4.986441_pilon to pilon.fasta [pilon] Writing NODE_8043_length_416_cov_2.616949:1-416 changes to pilon.changes [pilon] Writing updated NODE_8043_length_416_cov_2.616949_pilon to pilon.fasta [pilon] Writing NODE_8044_length_416_cov_1.467797:1-416 changes to pilon.changes [pilon] Writing updated NODE_8044_length_416_cov_1.467797_pilon to pilon.fasta [pilon] Writing NODE_8045_length_416_cov_0.932203:1-416 changes to pilon.changes [pilon] Writing updated NODE_8045_length_416_cov_0.932203_pilon to pilon.fasta [pilon] Writing NODE_8046_length_416_cov_0.932203:1-416 changes to pilon.changes [pilon] Writing updated NODE_8046_length_416_cov_0.932203_pilon to pilon.fasta [pilon] Writing NODE_8047_length_416_cov_0.816949:1-416 changes to pilon.changes [pilon] Writing updated NODE_8047_length_416_cov_0.816949_pilon to pilon.fasta [pilon] Writing NODE_8048_length_416_cov_0.803390:1-416 changes to pilon.changes [pilon] Writing updated NODE_8048_length_416_cov_0.803390_pilon to pilon.fasta [pilon] Writing NODE_8049_length_416_cov_0.776271:1-416 changes to pilon.changes [pilon] Writing updated NODE_8049_length_416_cov_0.776271_pilon to pilon.fasta [pilon] Writing NODE_8050_length_416_cov_0.637288:1-416 changes to pilon.changes [pilon] Writing updated NODE_8050_length_416_cov_0.637288_pilon to pilon.fasta [pilon] Writing NODE_8051_length_415_cov_51.397959:1-415 changes to pilon.changes [pilon] Writing updated NODE_8051_length_415_cov_51.397959_pilon to pilon.fasta [pilon] Writing NODE_8052_length_415_cov_41.612245:1-415 changes to pilon.changes [pilon] Writing updated NODE_8052_length_415_cov_41.612245_pilon to pilon.fasta [pilon] Writing NODE_8053_length_415_cov_24.044218:1-415 changes to pilon.changes [pilon] Writing updated NODE_8053_length_415_cov_24.044218_pilon to pilon.fasta [pilon] Writing NODE_8054_length_415_cov_17.591837:1-415 changes to pilon.changes [pilon] Writing updated NODE_8054_length_415_cov_17.591837_pilon to pilon.fasta [pilon] Writing NODE_8055_length_415_cov_16.006803:1-415 changes to pilon.changes [pilon] Writing updated NODE_8055_length_415_cov_16.006803_pilon to pilon.fasta [pilon] Writing NODE_8056_length_415_cov_12.023810:1-415 changes to pilon.changes [pilon] Writing updated NODE_8056_length_415_cov_12.023810_pilon to pilon.fasta [pilon] Writing NODE_8057_length_415_cov_10.051020:1-415 changes to pilon.changes [pilon] Writing updated NODE_8057_length_415_cov_10.051020_pilon to pilon.fasta [pilon] Writing NODE_8058_length_415_cov_10.023810:1-415 changes to pilon.changes [pilon] Writing updated NODE_8058_length_415_cov_10.023810_pilon to pilon.fasta [pilon] Writing NODE_8059_length_415_cov_4.486395:1-415 changes to pilon.changes [pilon] Writing updated NODE_8059_length_415_cov_4.486395_pilon to pilon.fasta [pilon] Writing NODE_8060_length_415_cov_1.710884:1-415 changes to pilon.changes [pilon] Writing updated NODE_8060_length_415_cov_1.710884_pilon to pilon.fasta [pilon] Writing NODE_8061_length_415_cov_1.493197:1-415 changes to pilon.changes [pilon] Writing updated NODE_8061_length_415_cov_1.493197_pilon to pilon.fasta [pilon] Writing NODE_8062_length_415_cov_1.489796:1-415 changes to pilon.changes [pilon] Writing updated NODE_8062_length_415_cov_1.489796_pilon to pilon.fasta [pilon] Writing NODE_8063_length_415_cov_1.374150:1-415 changes to pilon.changes [pilon] Writing updated NODE_8063_length_415_cov_1.374150_pilon to pilon.fasta [pilon] Writing NODE_8064_length_415_cov_1.078231:1-415 changes to pilon.changes [pilon] Writing updated NODE_8064_length_415_cov_1.078231_pilon to pilon.fasta [pilon] Writing NODE_8065_length_415_cov_0.901361:1-415 changes to pilon.changes [pilon] Writing updated NODE_8065_length_415_cov_0.901361_pilon to pilon.fasta [pilon] Writing NODE_8066_length_415_cov_0.829932:1-415 changes to pilon.changes [pilon] Writing updated NODE_8066_length_415_cov_0.829932_pilon to pilon.fasta [pilon] Writing NODE_8067_length_414_cov_67.638225:1-414 changes to pilon.changes [pilon] Writing updated NODE_8067_length_414_cov_67.638225_pilon to pilon.fasta [pilon] Writing NODE_8068_length_414_cov_58.747440:1-414 changes to pilon.changes [pilon] Writing updated NODE_8068_length_414_cov_58.747440_pilon to pilon.fasta [pilon] Writing NODE_8069_length_414_cov_55.170648:1-414 changes to pilon.changes [pilon] Writing updated NODE_8069_length_414_cov_55.170648_pilon to pilon.fasta [pilon] Writing NODE_8070_length_414_cov_40.621160:1-414 changes to pilon.changes [pilon] Writing updated NODE_8070_length_414_cov_40.621160_pilon to pilon.fasta [pilon] Writing NODE_8071_length_414_cov_36.139932:1-414 changes to pilon.changes [pilon] Writing updated NODE_8071_length_414_cov_36.139932_pilon to pilon.fasta [pilon] Writing NODE_8072_length_414_cov_28.058020:1-414 changes to pilon.changes [pilon] Writing updated NODE_8072_length_414_cov_28.058020_pilon to pilon.fasta [pilon] Writing NODE_8073_length_414_cov_22.986348:1-414 changes to pilon.changes [pilon] Writing updated NODE_8073_length_414_cov_22.986348_pilon to pilon.fasta [pilon] Writing NODE_8074_length_414_cov_21.498294:1-414 changes to pilon.changes [pilon] Writing updated NODE_8074_length_414_cov_21.498294_pilon to pilon.fasta [pilon] Writing NODE_8075_length_414_cov_20.846416:1-414 changes to pilon.changes [pilon] Writing updated NODE_8075_length_414_cov_20.846416_pilon to pilon.fasta [pilon] Writing NODE_8076_length_414_cov_20.843003:1-414 changes to pilon.changes [pilon] Writing updated NODE_8076_length_414_cov_20.843003_pilon to pilon.fasta [pilon] Writing NODE_8077_length_414_cov_19.000000:1-414 changes to pilon.changes [pilon] Writing updated NODE_8077_length_414_cov_19.000000_pilon to pilon.fasta [pilon] Writing NODE_8078_length_414_cov_18.774744:1-414 changes to pilon.changes [pilon] Writing updated NODE_8078_length_414_cov_18.774744_pilon to pilon.fasta [pilon] Writing NODE_8079_length_414_cov_18.477816:1-414 changes to pilon.changes [pilon] Writing updated NODE_8079_length_414_cov_18.477816_pilon to pilon.fasta [pilon] Writing NODE_8080_length_414_cov_17.419795:1-414 changes to pilon.changes [pilon] Writing updated NODE_8080_length_414_cov_17.419795_pilon to pilon.fasta [pilon] Writing NODE_8081_length_414_cov_16.955631:1-414 changes to pilon.changes [pilon] Writing updated NODE_8081_length_414_cov_16.955631_pilon to pilon.fasta [pilon] Writing NODE_8082_length_414_cov_16.761092:1-414 changes to pilon.changes [pilon] Writing updated NODE_8082_length_414_cov_16.761092_pilon to pilon.fasta [pilon] Writing NODE_8083_length_414_cov_16.600683:1-414 changes to pilon.changes [pilon] Writing updated NODE_8083_length_414_cov_16.600683_pilon to pilon.fasta [pilon] Writing NODE_8084_length_414_cov_16.143345:1-414 changes to pilon.changes [pilon] Writing updated NODE_8084_length_414_cov_16.143345_pilon to pilon.fasta [pilon] Writing NODE_8085_length_414_cov_15.894198:1-414 changes to pilon.changes [pilon] Writing updated NODE_8085_length_414_cov_15.894198_pilon to pilon.fasta [pilon] Writing NODE_8086_length_414_cov_14.754266:1-414 changes to pilon.changes [pilon] Writing updated NODE_8086_length_414_cov_14.754266_pilon to pilon.fasta [pilon] Writing NODE_8087_length_414_cov_13.713311:1-414 changes to pilon.changes [pilon] Writing updated NODE_8087_length_414_cov_13.713311_pilon to pilon.fasta [pilon] Writing NODE_8088_length_414_cov_12.245734:1-414 changes to pilon.changes [pilon] Writing updated NODE_8088_length_414_cov_12.245734_pilon to pilon.fasta [pilon] Writing NODE_8089_length_414_cov_11.095563:1-414 changes to pilon.changes [pilon] Writing updated NODE_8089_length_414_cov_11.095563_pilon to pilon.fasta [pilon] Writing NODE_8090_length_414_cov_9.692833:1-414 changes to pilon.changes [pilon] Writing updated NODE_8090_length_414_cov_9.692833_pilon to pilon.fasta [pilon] Writing NODE_8091_length_414_cov_8.467577:1-414 changes to pilon.changes [pilon] Writing updated NODE_8091_length_414_cov_8.467577_pilon to pilon.fasta [pilon] Writing NODE_8092_length_414_cov_2.255973:1-414 changes to pilon.changes [pilon] Writing updated NODE_8092_length_414_cov_2.255973_pilon to pilon.fasta [pilon] Writing NODE_8093_length_414_cov_2.122867:1-414 changes to pilon.changes [pilon] Writing updated NODE_8093_length_414_cov_2.122867_pilon to pilon.fasta [pilon] Writing NODE_8094_length_414_cov_2.098976:1-414 changes to pilon.changes [pilon] Writing updated NODE_8094_length_414_cov_2.098976_pilon to pilon.fasta [pilon] Writing NODE_8095_length_414_cov_1.187713:1-414 changes to pilon.changes [pilon] Writing updated NODE_8095_length_414_cov_1.187713_pilon to pilon.fasta [pilon] Writing NODE_8096_length_414_cov_0.938567:1-414 changes to pilon.changes [pilon] Writing updated NODE_8096_length_414_cov_0.938567_pilon to pilon.fasta [pilon] Writing NODE_8097_length_414_cov_0.750853:1-414 changes to pilon.changes [pilon] Writing updated NODE_8097_length_414_cov_0.750853_pilon to pilon.fasta [pilon] Writing NODE_8098_length_414_cov_0.604096:1-414 changes to pilon.changes [pilon] Writing updated NODE_8098_length_414_cov_0.604096_pilon to pilon.fasta [pilon] Writing NODE_8099_length_414_cov_0.593857:1-414 changes to pilon.changes [pilon] Writing updated NODE_8099_length_414_cov_0.593857_pilon to pilon.fasta [pilon] Writing NODE_8100_length_413_cov_79.092466:1-413 changes to pilon.changes [pilon] Writing updated NODE_8100_length_413_cov_79.092466_pilon to pilon.fasta [pilon] Writing NODE_8101_length_413_cov_49.595890:1-413 changes to pilon.changes [pilon] Writing updated NODE_8101_length_413_cov_49.595890_pilon to pilon.fasta [pilon] Writing NODE_8102_length_413_cov_39.729452:1-413 changes to pilon.changes [pilon] Writing updated NODE_8102_length_413_cov_39.729452_pilon to pilon.fasta [pilon] Writing NODE_8103_length_413_cov_33.780822:1-413 changes to pilon.changes [pilon] Writing updated NODE_8103_length_413_cov_33.780822_pilon to pilon.fasta [pilon] Writing NODE_8104_length_413_cov_30.472603:1-413 changes to pilon.changes [pilon] Writing updated NODE_8104_length_413_cov_30.472603_pilon to pilon.fasta [pilon] Writing NODE_8105_length_413_cov_15.688356:1-413 changes to pilon.changes [pilon] Writing updated NODE_8105_length_413_cov_15.688356_pilon to pilon.fasta [pilon] Writing NODE_8106_length_413_cov_11.297945:1-413 changes to pilon.changes [pilon] Writing updated NODE_8106_length_413_cov_11.297945_pilon to pilon.fasta [pilon] Writing NODE_8107_length_413_cov_10.616438:1-413 changes to pilon.changes [pilon] Writing updated NODE_8107_length_413_cov_10.616438_pilon to pilon.fasta [pilon] Writing NODE_8108_length_413_cov_3.078767:1-413 changes to pilon.changes [pilon] Writing updated NODE_8108_length_413_cov_3.078767_pilon to pilon.fasta [pilon] Writing NODE_8109_length_413_cov_2.945205:1-413 changes to pilon.changes [pilon] Writing updated NODE_8109_length_413_cov_2.945205_pilon to pilon.fasta [pilon] Writing NODE_8110_length_413_cov_2.780822:1-413 changes to pilon.changes [pilon] Writing updated NODE_8110_length_413_cov_2.780822_pilon to pilon.fasta [pilon] Writing NODE_8111_length_413_cov_2.034247:1-413 changes to pilon.changes [pilon] Writing updated NODE_8111_length_413_cov_2.034247_pilon to pilon.fasta [pilon] Writing NODE_8112_length_412_cov_49.460481:1-412 changes to pilon.changes [pilon] Writing updated NODE_8112_length_412_cov_49.460481_pilon to pilon.fasta [pilon] Writing NODE_8113_length_412_cov_35.364261:1-412 changes to pilon.changes [pilon] Writing updated NODE_8113_length_412_cov_35.364261_pilon to pilon.fasta [pilon] Writing NODE_8114_length_412_cov_33.285223:1-412 changes to pilon.changes [pilon] Writing updated NODE_8114_length_412_cov_33.285223_pilon to pilon.fasta [pilon] Writing NODE_8115_length_412_cov_29.783505:1-412 changes to pilon.changes [pilon] Writing updated NODE_8115_length_412_cov_29.783505_pilon to pilon.fasta [pilon] Writing NODE_8116_length_412_cov_23.718213:1-412 changes to pilon.changes [pilon] Writing updated NODE_8116_length_412_cov_23.718213_pilon to pilon.fasta [pilon] Writing NODE_8117_length_412_cov_7.429553:1-412 changes to pilon.changes [pilon] Writing updated NODE_8117_length_412_cov_7.429553_pilon to pilon.fasta [pilon] Writing NODE_8118_length_412_cov_3.536082:1-412 changes to pilon.changes [pilon] Writing updated NODE_8118_length_412_cov_3.536082_pilon to pilon.fasta [pilon] Writing NODE_8119_length_412_cov_2.457045:1-412 changes to pilon.changes [pilon] Writing updated NODE_8119_length_412_cov_2.457045_pilon to pilon.fasta [pilon] Writing NODE_8120_length_412_cov_2.182131:1-412 changes to pilon.changes [pilon] Writing updated NODE_8120_length_412_cov_2.182131_pilon to pilon.fasta [pilon] Writing NODE_8121_length_412_cov_1.876289:1-412 changes to pilon.changes [pilon] Writing updated NODE_8121_length_412_cov_1.876289_pilon to pilon.fasta [pilon] Writing NODE_8122_length_412_cov_1.756014:1-412 changes to pilon.changes [pilon] Writing updated NODE_8122_length_412_cov_1.756014_pilon to pilon.fasta [pilon] Writing NODE_8123_length_412_cov_1.436426:1-412 changes to pilon.changes [pilon] Writing updated NODE_8123_length_412_cov_1.436426_pilon to pilon.fasta [pilon] Writing NODE_8124_length_412_cov_1.381443:1-412 changes to pilon.changes [pilon] Writing updated NODE_8124_length_412_cov_1.381443_pilon to pilon.fasta [pilon] Writing NODE_8125_length_412_cov_1.144330:1-412 changes to pilon.changes [pilon] Writing updated NODE_8125_length_412_cov_1.144330_pilon to pilon.fasta [pilon] Writing NODE_8126_length_412_cov_1.082474:1-412 changes to pilon.changes [pilon] Writing updated NODE_8126_length_412_cov_1.082474_pilon to pilon.fasta [pilon] Writing NODE_8127_length_411_cov_47.434483:1-411 changes to pilon.changes [pilon] Writing updated NODE_8127_length_411_cov_47.434483_pilon to pilon.fasta [pilon] Writing NODE_8128_length_411_cov_35.789655:1-411 changes to pilon.changes [pilon] Writing updated NODE_8128_length_411_cov_35.789655_pilon to pilon.fasta [pilon] Writing NODE_8129_length_411_cov_33.993103:1-411 changes to pilon.changes [pilon] Writing updated NODE_8129_length_411_cov_33.993103_pilon to pilon.fasta [pilon] Writing NODE_8130_length_411_cov_30.755172:1-411 changes to pilon.changes [pilon] Writing updated NODE_8130_length_411_cov_30.755172_pilon to pilon.fasta [pilon] Writing NODE_8131_length_411_cov_26.503448:1-411 changes to pilon.changes [pilon] Writing updated NODE_8131_length_411_cov_26.503448_pilon to pilon.fasta [pilon] Writing NODE_8132_length_411_cov_25.748276:1-411 changes to pilon.changes [pilon] Writing updated NODE_8132_length_411_cov_25.748276_pilon to pilon.fasta [pilon] Writing NODE_8133_length_411_cov_24.458621:1-411 changes to pilon.changes [pilon] Writing updated NODE_8133_length_411_cov_24.458621_pilon to pilon.fasta [pilon] Writing NODE_8134_length_411_cov_23.586207:1-411 changes to pilon.changes [pilon] Writing updated NODE_8134_length_411_cov_23.586207_pilon to pilon.fasta [pilon] Writing NODE_8135_length_411_cov_23.289655:1-411 changes to pilon.changes [pilon] Writing updated NODE_8135_length_411_cov_23.289655_pilon to pilon.fasta [pilon] Writing NODE_8136_length_411_cov_22.696552:1-411 changes to pilon.changes [pilon] Writing updated NODE_8136_length_411_cov_22.696552_pilon to pilon.fasta [pilon] Writing NODE_8137_length_411_cov_22.472414:1-411 changes to pilon.changes [pilon] Writing updated NODE_8137_length_411_cov_22.472414_pilon to pilon.fasta [pilon] Writing NODE_8138_length_411_cov_21.944828:1-411 changes to pilon.changes [pilon] Writing updated NODE_8138_length_411_cov_21.944828_pilon to pilon.fasta [pilon] Writing NODE_8139_length_411_cov_17.624138:1-411 changes to pilon.changes [pilon] Writing updated NODE_8139_length_411_cov_17.624138_pilon to pilon.fasta [pilon] Writing NODE_8140_length_411_cov_17.596552:1-411 changes to pilon.changes [pilon] Writing updated NODE_8140_length_411_cov_17.596552_pilon to pilon.fasta [pilon] Writing NODE_8141_length_411_cov_17.331034:1-411 changes to pilon.changes [pilon] Writing updated NODE_8141_length_411_cov_17.331034_pilon to pilon.fasta [pilon] Writing NODE_8142_length_411_cov_15.503448:1-411 changes to pilon.changes [pilon] Writing updated NODE_8142_length_411_cov_15.503448_pilon to pilon.fasta [pilon] Writing NODE_8143_length_411_cov_15.024138:1-411 changes to pilon.changes [pilon] Writing updated NODE_8143_length_411_cov_15.024138_pilon to pilon.fasta [pilon] Writing NODE_8144_length_411_cov_14.389655:1-411 changes to pilon.changes [pilon] Writing updated NODE_8144_length_411_cov_14.389655_pilon to pilon.fasta [pilon] Writing NODE_8145_length_411_cov_13.941379:1-411 changes to pilon.changes [pilon] Writing updated NODE_8145_length_411_cov_13.941379_pilon to pilon.fasta [pilon] Writing NODE_8146_length_411_cov_13.782759:1-411 changes to pilon.changes [pilon] Writing updated NODE_8146_length_411_cov_13.782759_pilon to pilon.fasta [pilon] Writing NODE_8147_length_411_cov_12.144828:1-411 changes to pilon.changes [pilon] Writing updated NODE_8147_length_411_cov_12.144828_pilon to pilon.fasta [pilon] Writing NODE_8148_length_411_cov_11.051724:1-411 changes to pilon.changes [pilon] Writing updated NODE_8148_length_411_cov_11.051724_pilon to pilon.fasta [pilon] Writing NODE_8149_length_411_cov_10.841379:1-411 changes to pilon.changes [pilon] Writing updated NODE_8149_length_411_cov_10.841379_pilon to pilon.fasta [pilon] Writing NODE_8150_length_411_cov_8.620690:1-411 changes to pilon.changes [pilon] Writing updated NODE_8150_length_411_cov_8.620690_pilon to pilon.fasta [pilon] Writing NODE_8151_length_411_cov_8.537931:1-411 changes to pilon.changes [pilon] Writing updated NODE_8151_length_411_cov_8.537931_pilon to pilon.fasta [pilon] Writing NODE_8152_length_411_cov_7.979310:1-411 changes to pilon.changes [pilon] Writing updated NODE_8152_length_411_cov_7.979310_pilon to pilon.fasta [pilon] Writing NODE_8153_length_411_cov_6.765517:1-411 changes to pilon.changes [pilon] Writing updated NODE_8153_length_411_cov_6.765517_pilon to pilon.fasta [pilon] Writing NODE_8154_length_411_cov_3.582759:1-411 changes to pilon.changes [pilon] Writing updated NODE_8154_length_411_cov_3.582759_pilon to pilon.fasta [pilon] Writing NODE_8155_length_411_cov_2.734483:1-411 changes to pilon.changes [pilon] Writing updated NODE_8155_length_411_cov_2.734483_pilon to pilon.fasta [pilon] Writing NODE_8156_length_411_cov_1.537931:1-411 changes to pilon.changes [pilon] Writing updated NODE_8156_length_411_cov_1.537931_pilon to pilon.fasta [pilon] Writing NODE_8157_length_411_cov_1.300000:1-411 changes to pilon.changes [pilon] Writing updated NODE_8157_length_411_cov_1.300000_pilon to pilon.fasta [pilon] Writing NODE_8158_length_411_cov_0.758621:1-411 changes to pilon.changes [pilon] Writing updated NODE_8158_length_411_cov_0.758621_pilon to pilon.fasta [pilon] Writing NODE_8159_length_411_cov_0.662069:1-411 changes to pilon.changes [pilon] Writing updated NODE_8159_length_411_cov_0.662069_pilon to pilon.fasta [pilon] Writing NODE_8160_length_411_cov_0.634483:1-411 changes to pilon.changes [pilon] Writing updated NODE_8160_length_411_cov_0.634483_pilon to pilon.fasta [pilon] Writing NODE_8161_length_410_cov_59.833910:1-410 changes to pilon.changes [pilon] Writing updated NODE_8161_length_410_cov_59.833910_pilon to pilon.fasta [pilon] Writing NODE_8162_length_410_cov_45.903114:1-410 changes to pilon.changes [pilon] Writing updated NODE_8162_length_410_cov_45.903114_pilon to pilon.fasta [pilon] Writing NODE_8163_length_410_cov_30.782007:1-410 changes to pilon.changes [pilon] Writing updated NODE_8163_length_410_cov_30.782007_pilon to pilon.fasta [pilon] Writing NODE_8164_length_410_cov_29.487889:1-410 changes to pilon.changes [pilon] Writing updated NODE_8164_length_410_cov_29.487889_pilon to pilon.fasta [pilon] Writing NODE_8165_length_410_cov_27.384083:1-410 changes to pilon.changes [pilon] Writing updated NODE_8165_length_410_cov_27.384083_pilon to pilon.fasta [pilon] Writing NODE_8166_length_410_cov_24.332180:1-410 changes to pilon.changes [pilon] Writing updated NODE_8166_length_410_cov_24.332180_pilon to pilon.fasta [pilon] Writing NODE_8167_length_410_cov_21.854671:1-410 changes to pilon.changes [pilon] Writing updated NODE_8167_length_410_cov_21.854671_pilon to pilon.fasta [pilon] Writing NODE_8168_length_410_cov_15.965398:1-410 changes to pilon.changes [pilon] Writing updated NODE_8168_length_410_cov_15.965398_pilon to pilon.fasta [pilon] Writing NODE_8169_length_410_cov_8.629758:1-410 changes to pilon.changes [pilon] Writing updated NODE_8169_length_410_cov_8.629758_pilon to pilon.fasta [pilon] Writing NODE_8170_length_410_cov_2.235294:1-410 changes to pilon.changes [pilon] Writing updated NODE_8170_length_410_cov_2.235294_pilon to pilon.fasta [pilon] Writing NODE_8171_length_410_cov_1.311419:1-410 changes to pilon.changes [pilon] Writing updated NODE_8171_length_410_cov_1.311419_pilon to pilon.fasta [pilon] Writing NODE_8172_length_410_cov_1.010381:1-410 changes to pilon.changes [pilon] Writing updated NODE_8172_length_410_cov_1.010381_pilon to pilon.fasta [pilon] Writing NODE_8173_length_410_cov_0.975779:1-410 changes to pilon.changes [pilon] Writing updated NODE_8173_length_410_cov_0.975779_pilon to pilon.fasta [pilon] Writing NODE_8174_length_410_cov_0.664360:1-410 changes to pilon.changes [pilon] Writing updated NODE_8174_length_410_cov_0.664360_pilon to pilon.fasta [pilon] Writing NODE_8175_length_410_cov_0.653979:1-410 changes to pilon.changes [pilon] Writing updated NODE_8175_length_410_cov_0.653979_pilon to pilon.fasta [pilon] Writing NODE_8176_length_409_cov_50.055556:1-409 changes to pilon.changes [pilon] Writing updated NODE_8176_length_409_cov_50.055556_pilon to pilon.fasta [pilon] Writing NODE_8177_length_409_cov_26.871528:1-409 changes to pilon.changes [pilon] Writing updated NODE_8177_length_409_cov_26.871528_pilon to pilon.fasta [pilon] Writing NODE_8178_length_409_cov_26.065972:1-409 changes to pilon.changes [pilon] Writing updated NODE_8178_length_409_cov_26.065972_pilon to pilon.fasta [pilon] Writing NODE_8179_length_409_cov_14.440972:1-409 changes to pilon.changes [pilon] Writing updated NODE_8179_length_409_cov_14.440972_pilon to pilon.fasta [pilon] Writing NODE_8180_length_409_cov_10.451389:1-409 changes to pilon.changes [pilon] Writing updated NODE_8180_length_409_cov_10.451389_pilon to pilon.fasta [pilon] Writing NODE_8181_length_409_cov_9.284722:1-409 changes to pilon.changes [pilon] Writing updated NODE_8181_length_409_cov_9.284722_pilon to pilon.fasta [pilon] Writing NODE_8182_length_409_cov_7.750000:1-409 changes to pilon.changes [pilon] Writing updated NODE_8182_length_409_cov_7.750000_pilon to pilon.fasta [pilon] Writing NODE_8183_length_409_cov_3.697917:1-409 changes to pilon.changes [pilon] Writing updated NODE_8183_length_409_cov_3.697917_pilon to pilon.fasta [pilon] Writing NODE_8184_length_409_cov_3.496528:1-409 changes to pilon.changes [pilon] Writing updated NODE_8184_length_409_cov_3.496528_pilon to pilon.fasta [pilon] Writing NODE_8185_length_409_cov_2.482639:1-409 changes to pilon.changes [pilon] Writing updated NODE_8185_length_409_cov_2.482639_pilon to pilon.fasta [pilon] Writing NODE_8186_length_409_cov_2.024306:1-409 changes to pilon.changes [pilon] Writing updated NODE_8186_length_409_cov_2.024306_pilon to pilon.fasta [pilon] Writing NODE_8187_length_409_cov_1.784722:1-409 changes to pilon.changes [pilon] Writing updated NODE_8187_length_409_cov_1.784722_pilon to pilon.fasta [pilon] Writing NODE_8188_length_409_cov_1.277778:1-409 changes to pilon.changes [pilon] Writing updated NODE_8188_length_409_cov_1.277778_pilon to pilon.fasta [pilon] Writing NODE_8189_length_409_cov_0.892361:1-409 changes to pilon.changes [pilon] Writing updated NODE_8189_length_409_cov_0.892361_pilon to pilon.fasta [pilon] Writing NODE_8190_length_409_cov_0.739583:1-409 changes to pilon.changes [pilon] Writing updated NODE_8190_length_409_cov_0.739583_pilon to pilon.fasta [pilon] Writing NODE_8191_length_409_cov_0.704861:1-409 changes to pilon.changes [pilon] Writing updated NODE_8191_length_409_cov_0.704861_pilon to pilon.fasta [pilon] Writing NODE_8192_length_409_cov_0.402778:1-409 changes to pilon.changes [pilon] Writing updated NODE_8192_length_409_cov_0.402778_pilon to pilon.fasta [pilon] Writing NODE_8193_length_408_cov_42.763066:1-408 changes to pilon.changes [pilon] Writing updated NODE_8193_length_408_cov_42.763066_pilon to pilon.fasta [pilon] Writing NODE_8194_length_408_cov_29.153310:1-408 changes to pilon.changes [pilon] Writing updated NODE_8194_length_408_cov_29.153310_pilon to pilon.fasta [pilon] Writing NODE_8195_length_408_cov_25.801394:1-408 changes to pilon.changes [pilon] Writing updated NODE_8195_length_408_cov_25.801394_pilon to pilon.fasta [pilon] Writing NODE_8196_length_408_cov_25.094077:1-408 changes to pilon.changes [pilon] Writing updated NODE_8196_length_408_cov_25.094077_pilon to pilon.fasta [pilon] Writing NODE_8197_length_408_cov_24.324042:1-408 changes to pilon.changes [pilon] Writing updated NODE_8197_length_408_cov_24.324042_pilon to pilon.fasta [pilon] Writing NODE_8198_length_408_cov_22.979094:1-408 changes to pilon.changes [pilon] Writing updated NODE_8198_length_408_cov_22.979094_pilon to pilon.fasta [pilon] Writing NODE_8199_length_408_cov_22.905923:1-408 changes to pilon.changes [pilon] Writing updated NODE_8199_length_408_cov_22.905923_pilon to pilon.fasta [pilon] Writing NODE_8200_length_408_cov_21.585366:1-408 changes to pilon.changes [pilon] Writing updated NODE_8200_length_408_cov_21.585366_pilon to pilon.fasta [pilon] Writing NODE_8201_length_408_cov_20.790941:1-408 changes to pilon.changes [pilon] Writing updated NODE_8201_length_408_cov_20.790941_pilon to pilon.fasta [pilon] Writing NODE_8202_length_408_cov_20.212544:1-408 changes to pilon.changes [pilon] Writing updated NODE_8202_length_408_cov_20.212544_pilon to pilon.fasta [pilon] Writing NODE_8203_length_408_cov_18.355401:1-408 changes to pilon.changes [pilon] Writing updated NODE_8203_length_408_cov_18.355401_pilon to pilon.fasta [pilon] Writing NODE_8204_length_408_cov_17.853659:1-408 changes to pilon.changes [pilon] Writing updated NODE_8204_length_408_cov_17.853659_pilon to pilon.fasta [pilon] Writing NODE_8205_length_408_cov_14.898955:1-408 changes to pilon.changes [pilon] Writing updated NODE_8205_length_408_cov_14.898955_pilon to pilon.fasta [pilon] Writing NODE_8206_length_408_cov_14.222997:1-408 changes to pilon.changes [pilon] Writing updated NODE_8206_length_408_cov_14.222997_pilon to pilon.fasta [pilon] Writing NODE_8207_length_408_cov_12.020906:1-408 changes to pilon.changes [pilon] Writing updated NODE_8207_length_408_cov_12.020906_pilon to pilon.fasta [pilon] Writing NODE_8208_length_408_cov_9.871080:1-408 changes to pilon.changes [pilon] Writing updated NODE_8208_length_408_cov_9.871080_pilon to pilon.fasta [pilon] Writing NODE_8209_length_408_cov_9.557491:1-408 changes to pilon.changes [pilon] Writing updated NODE_8209_length_408_cov_9.557491_pilon to pilon.fasta [pilon] Writing NODE_8210_length_408_cov_9.034843:1-408 changes to pilon.changes [pilon] Writing updated NODE_8210_length_408_cov_9.034843_pilon to pilon.fasta [pilon] Writing NODE_8211_length_408_cov_8.432056:1-408 changes to pilon.changes [pilon] Writing updated NODE_8211_length_408_cov_8.432056_pilon to pilon.fasta [pilon] Writing NODE_8212_length_408_cov_3.404181:1-408 changes to pilon.changes [pilon] Writing updated NODE_8212_length_408_cov_3.404181_pilon to pilon.fasta [pilon] Writing NODE_8213_length_408_cov_3.216028:1-408 changes to pilon.changes [pilon] Writing updated NODE_8213_length_408_cov_3.216028_pilon to pilon.fasta [pilon] Writing NODE_8214_length_408_cov_3.209059:1-408 changes to pilon.changes [pilon] Writing updated NODE_8214_length_408_cov_3.209059_pilon to pilon.fasta [pilon] Writing NODE_8215_length_408_cov_1.149826:1-408 changes to pilon.changes [pilon] Writing updated NODE_8215_length_408_cov_1.149826_pilon to pilon.fasta [pilon] Writing NODE_8216_length_408_cov_0.979094:1-408 changes to pilon.changes [pilon] Writing updated NODE_8216_length_408_cov_0.979094_pilon to pilon.fasta [pilon] Writing NODE_8217_length_408_cov_0.787456:1-408 changes to pilon.changes [pilon] Writing updated NODE_8217_length_408_cov_0.787456_pilon to pilon.fasta [pilon] Writing NODE_8218_length_408_cov_0.630662:1-408 changes to pilon.changes [pilon] Writing updated NODE_8218_length_408_cov_0.630662_pilon to pilon.fasta [pilon] Writing NODE_8219_length_407_cov_74.241259:1-407 changes to pilon.changes [pilon] Writing updated NODE_8219_length_407_cov_74.241259_pilon to pilon.fasta [pilon] Writing NODE_8220_length_407_cov_67.559441:1-407 changes to pilon.changes [pilon] Writing updated NODE_8220_length_407_cov_67.559441_pilon to pilon.fasta [pilon] Writing NODE_8221_length_407_cov_62.783217:1-407 changes to pilon.changes [pilon] Writing updated NODE_8221_length_407_cov_62.783217_pilon to pilon.fasta [pilon] Writing NODE_8222_length_407_cov_28.811189:1-407 changes to pilon.changes [pilon] Writing updated NODE_8222_length_407_cov_28.811189_pilon to pilon.fasta [pilon] Writing NODE_8223_length_407_cov_26.276224:1-407 changes to pilon.changes [pilon] Writing updated NODE_8223_length_407_cov_26.276224_pilon to pilon.fasta [pilon] Writing NODE_8224_length_407_cov_23.087413:1-407 changes to pilon.changes [pilon] Writing updated NODE_8224_length_407_cov_23.087413_pilon to pilon.fasta [pilon] Writing NODE_8225_length_407_cov_19.066434:1-407 changes to pilon.changes [pilon] Writing updated NODE_8225_length_407_cov_19.066434_pilon to pilon.fasta [pilon] Writing NODE_8226_length_407_cov_18.807692:1-407 changes to pilon.changes [pilon] Writing updated NODE_8226_length_407_cov_18.807692_pilon to pilon.fasta [pilon] Writing NODE_8227_length_407_cov_17.884615:1-407 changes to pilon.changes [pilon] Writing updated NODE_8227_length_407_cov_17.884615_pilon to pilon.fasta [pilon] Writing NODE_8228_length_407_cov_16.737762:1-407 changes to pilon.changes [pilon] Writing updated NODE_8228_length_407_cov_16.737762_pilon to pilon.fasta [pilon] Writing NODE_8229_length_407_cov_15.905594:1-407 changes to pilon.changes [pilon] Writing updated NODE_8229_length_407_cov_15.905594_pilon to pilon.fasta [pilon] Writing NODE_8230_length_407_cov_14.615385:1-407 changes to pilon.changes [pilon] Writing updated NODE_8230_length_407_cov_14.615385_pilon to pilon.fasta [pilon] Writing NODE_8231_length_407_cov_13.083916:1-407 changes to pilon.changes [pilon] Writing updated NODE_8231_length_407_cov_13.083916_pilon to pilon.fasta [pilon] Writing NODE_8232_length_407_cov_12.062937:1-407 changes to pilon.changes [pilon] Writing updated NODE_8232_length_407_cov_12.062937_pilon to pilon.fasta [pilon] Writing NODE_8233_length_407_cov_9.555944:1-407 changes to pilon.changes [pilon] Writing updated NODE_8233_length_407_cov_9.555944_pilon to pilon.fasta [pilon] Writing NODE_8234_length_407_cov_9.475524:1-407 changes to pilon.changes [pilon] Writing updated NODE_8234_length_407_cov_9.475524_pilon to pilon.fasta [pilon] Writing NODE_8235_length_407_cov_6.276224:1-407 changes to pilon.changes [pilon] Writing updated NODE_8235_length_407_cov_6.276224_pilon to pilon.fasta [pilon] Writing NODE_8236_length_407_cov_4.940559:1-407 changes to pilon.changes [pilon] Writing updated NODE_8236_length_407_cov_4.940559_pilon to pilon.fasta [pilon] Writing NODE_8237_length_407_cov_4.402098:1-407 changes to pilon.changes [pilon] Writing updated NODE_8237_length_407_cov_4.402098_pilon to pilon.fasta [pilon] Writing NODE_8238_length_407_cov_3.856643:1-407 changes to pilon.changes [pilon] Writing updated NODE_8238_length_407_cov_3.856643_pilon to pilon.fasta [pilon] Writing NODE_8239_length_407_cov_3.723776:1-407 changes to pilon.changes [pilon] Writing updated NODE_8239_length_407_cov_3.723776_pilon to pilon.fasta [pilon] Writing NODE_8240_length_407_cov_1.846154:1-407 changes to pilon.changes [pilon] Writing updated NODE_8240_length_407_cov_1.846154_pilon to pilon.fasta [pilon] Writing NODE_8241_length_407_cov_1.332168:1-407 changes to pilon.changes [pilon] Writing updated NODE_8241_length_407_cov_1.332168_pilon to pilon.fasta [pilon] Writing NODE_8242_length_407_cov_1.059441:1-407 changes to pilon.changes [pilon] Writing updated NODE_8242_length_407_cov_1.059441_pilon to pilon.fasta [pilon] Writing NODE_8243_length_407_cov_0.954545:1-407 changes to pilon.changes [pilon] Writing updated NODE_8243_length_407_cov_0.954545_pilon to pilon.fasta [pilon] Writing NODE_8244_length_407_cov_0.828671:1-407 changes to pilon.changes [pilon] Writing updated NODE_8244_length_407_cov_0.828671_pilon to pilon.fasta [pilon] Writing NODE_8245_length_407_cov_0.727273:1-407 changes to pilon.changes [pilon] Writing updated NODE_8245_length_407_cov_0.727273_pilon to pilon.fasta [pilon] Writing NODE_8246_length_407_cov_0.569930:1-407 changes to pilon.changes [pilon] Writing updated NODE_8246_length_407_cov_0.569930_pilon to pilon.fasta [pilon] Writing NODE_8247_length_406_cov_43.719298:1-406 changes to pilon.changes [pilon] Writing updated NODE_8247_length_406_cov_43.719298_pilon to pilon.fasta [pilon] Writing NODE_8248_length_406_cov_23.231579:1-406 changes to pilon.changes [pilon] Writing updated NODE_8248_length_406_cov_23.231579_pilon to pilon.fasta [pilon] Writing NODE_8249_length_406_cov_22.852632:1-406 changes to pilon.changes [pilon] Writing updated NODE_8249_length_406_cov_22.852632_pilon to pilon.fasta [pilon] Writing NODE_8250_length_406_cov_21.947368:1-406 changes to pilon.changes [pilon] Writing updated NODE_8250_length_406_cov_21.947368_pilon to pilon.fasta [pilon] Writing NODE_8251_length_406_cov_19.508772:1-406 changes to pilon.changes [pilon] Writing updated NODE_8251_length_406_cov_19.508772_pilon to pilon.fasta [pilon] Writing NODE_8252_length_406_cov_16.273684:1-406 changes to pilon.changes [pilon] Writing updated NODE_8252_length_406_cov_16.273684_pilon to pilon.fasta [pilon] Writing NODE_8253_length_406_cov_14.578947:1-406 changes to pilon.changes [pilon] Writing updated NODE_8253_length_406_cov_14.578947_pilon to pilon.fasta [pilon] Writing NODE_8254_length_406_cov_13.803509:1-406 changes to pilon.changes [pilon] Writing updated NODE_8254_length_406_cov_13.803509_pilon to pilon.fasta [pilon] Writing NODE_8255_length_406_cov_10.340351:1-406 changes to pilon.changes [pilon] Writing updated NODE_8255_length_406_cov_10.340351_pilon to pilon.fasta [pilon] Writing NODE_8256_length_406_cov_9.389474:1-406 changes to pilon.changes [pilon] Writing updated NODE_8256_length_406_cov_9.389474_pilon to pilon.fasta [pilon] Writing NODE_8257_length_406_cov_7.849123:1-406 changes to pilon.changes [pilon] Writing updated NODE_8257_length_406_cov_7.849123_pilon to pilon.fasta [pilon] Writing NODE_8258_length_406_cov_4.757895:1-406 changes to pilon.changes [pilon] Writing updated NODE_8258_length_406_cov_4.757895_pilon to pilon.fasta [pilon] Writing NODE_8259_length_406_cov_1.757895:1-406 changes to pilon.changes [pilon] Writing updated NODE_8259_length_406_cov_1.757895_pilon to pilon.fasta [pilon] Writing NODE_8260_length_406_cov_1.687719:1-406 changes to pilon.changes [pilon] Writing updated NODE_8260_length_406_cov_1.687719_pilon to pilon.fasta [pilon] Writing NODE_8261_length_406_cov_1.098246:1-406 changes to pilon.changes [pilon] Writing updated NODE_8261_length_406_cov_1.098246_pilon to pilon.fasta [pilon] Writing NODE_8262_length_406_cov_0.964912:1-406 changes to pilon.changes [pilon] Writing updated NODE_8262_length_406_cov_0.964912_pilon to pilon.fasta [pilon] Writing NODE_8263_length_406_cov_0.473684:1-406 changes to pilon.changes [pilon] Writing updated NODE_8263_length_406_cov_0.473684_pilon to pilon.fasta [pilon] Writing NODE_8264_length_405_cov_64.197183:1-405 changes to pilon.changes [pilon] Writing updated NODE_8264_length_405_cov_64.197183_pilon to pilon.fasta [pilon] Writing NODE_8265_length_405_cov_63.718310:1-405 changes to pilon.changes [pilon] Writing updated NODE_8265_length_405_cov_63.718310_pilon to pilon.fasta [pilon] Writing NODE_8266_length_405_cov_41.862676:1-405 changes to pilon.changes [pilon] Writing updated NODE_8266_length_405_cov_41.862676_pilon to pilon.fasta [pilon] Writing NODE_8267_length_405_cov_31.292254:1-405 changes to pilon.changes [pilon] Writing updated NODE_8267_length_405_cov_31.292254_pilon to pilon.fasta [pilon] Writing NODE_8268_length_405_cov_29.295775:1-405 changes to pilon.changes [pilon] Writing updated NODE_8268_length_405_cov_29.295775_pilon to pilon.fasta [pilon] Writing NODE_8269_length_405_cov_27.021127:1-405 changes to pilon.changes [pilon] Writing updated NODE_8269_length_405_cov_27.021127_pilon to pilon.fasta [pilon] Writing NODE_8270_length_405_cov_24.799296:1-405 changes to pilon.changes [pilon] Writing updated NODE_8270_length_405_cov_24.799296_pilon to pilon.fasta [pilon] Writing NODE_8271_length_405_cov_24.721831:1-405 changes to pilon.changes [pilon] Writing updated NODE_8271_length_405_cov_24.721831_pilon to pilon.fasta [pilon] Writing NODE_8272_length_405_cov_24.545775:1-405 changes to pilon.changes [pilon] Writing updated NODE_8272_length_405_cov_24.545775_pilon to pilon.fasta [pilon] Writing NODE_8273_length_405_cov_24.285211:1-405 changes to pilon.changes [pilon] Writing updated NODE_8273_length_405_cov_24.285211_pilon to pilon.fasta [pilon] Writing NODE_8274_length_405_cov_23.137324:1-405 changes to pilon.changes [pilon] Writing updated NODE_8274_length_405_cov_23.137324_pilon to pilon.fasta [pilon] Writing NODE_8275_length_405_cov_20.718310:1-405 changes to pilon.changes [pilon] Writing updated NODE_8275_length_405_cov_20.718310_pilon to pilon.fasta [pilon] Writing NODE_8276_length_405_cov_20.334507:1-405 changes to pilon.changes [pilon] Writing updated NODE_8276_length_405_cov_20.334507_pilon to pilon.fasta [pilon] Writing NODE_8277_length_405_cov_20.242958:1-405 changes to pilon.changes [pilon] Writing updated NODE_8277_length_405_cov_20.242958_pilon to pilon.fasta [pilon] Writing NODE_8278_length_405_cov_19.901408:1-405 changes to pilon.changes [pilon] Writing updated NODE_8278_length_405_cov_19.901408_pilon to pilon.fasta [pilon] Writing NODE_8279_length_405_cov_19.475352:1-405 changes to pilon.changes [pilon] Writing updated NODE_8279_length_405_cov_19.475352_pilon to pilon.fasta [pilon] Writing NODE_8280_length_405_cov_19.274648:1-405 changes to pilon.changes [pilon] Writing updated NODE_8280_length_405_cov_19.274648_pilon to pilon.fasta [pilon] Writing NODE_8281_length_405_cov_16.802817:1-405 changes to pilon.changes [pilon] Writing updated NODE_8281_length_405_cov_16.802817_pilon to pilon.fasta [pilon] Writing NODE_8282_length_405_cov_16.651408:1-405 changes to pilon.changes [pilon] Writing updated NODE_8282_length_405_cov_16.651408_pilon to pilon.fasta [pilon] Writing NODE_8283_length_405_cov_14.517606:1-405 changes to pilon.changes [pilon] Writing updated NODE_8283_length_405_cov_14.517606_pilon to pilon.fasta [pilon] Writing NODE_8284_length_405_cov_14.408451:1-405 changes to pilon.changes [pilon] Writing updated NODE_8284_length_405_cov_14.408451_pilon to pilon.fasta [pilon] Writing NODE_8285_length_405_cov_14.000000:1-405 changes to pilon.changes [pilon] Writing updated NODE_8285_length_405_cov_14.000000_pilon to pilon.fasta [pilon] Writing NODE_8286_length_405_cov_12.718310:1-405 changes to pilon.changes [pilon] Writing updated NODE_8286_length_405_cov_12.718310_pilon to pilon.fasta [pilon] Writing NODE_8287_length_405_cov_12.630282:1-405 changes to pilon.changes [pilon] Writing updated NODE_8287_length_405_cov_12.630282_pilon to pilon.fasta [pilon] Writing NODE_8288_length_405_cov_11.876761:1-405 changes to pilon.changes [pilon] Writing updated NODE_8288_length_405_cov_11.876761_pilon to pilon.fasta [pilon] Writing NODE_8289_length_405_cov_11.654930:1-405 changes to pilon.changes [pilon] Writing updated NODE_8289_length_405_cov_11.654930_pilon to pilon.fasta [pilon] Writing NODE_8290_length_405_cov_11.119718:1-405 changes to pilon.changes [pilon] Writing updated NODE_8290_length_405_cov_11.119718_pilon to pilon.fasta [pilon] Writing NODE_8291_length_405_cov_10.232394:1-405 changes to pilon.changes [pilon] Writing updated NODE_8291_length_405_cov_10.232394_pilon to pilon.fasta [pilon] Writing NODE_8292_length_405_cov_8.235915:1-405 changes to pilon.changes [pilon] Writing updated NODE_8292_length_405_cov_8.235915_pilon to pilon.fasta [pilon] Writing NODE_8293_length_405_cov_7.580986:1-405 changes to pilon.changes [pilon] Writing updated NODE_8293_length_405_cov_7.580986_pilon to pilon.fasta [pilon] Writing NODE_8294_length_405_cov_6.693662:1-405 changes to pilon.changes [pilon] Writing updated NODE_8294_length_405_cov_6.693662_pilon to pilon.fasta [pilon] Writing NODE_8295_length_405_cov_6.179577:1-405 changes to pilon.changes [pilon] Writing updated NODE_8295_length_405_cov_6.179577_pilon to pilon.fasta [pilon] Writing NODE_8296_length_405_cov_5.602113:1-405 changes to pilon.changes [pilon] Writing updated NODE_8296_length_405_cov_5.602113_pilon to pilon.fasta [pilon] Writing NODE_8297_length_405_cov_1.985915:1-405 changes to pilon.changes [pilon] Writing updated NODE_8297_length_405_cov_1.985915_pilon to pilon.fasta [pilon] Writing NODE_8298_length_405_cov_1.510563:1-405 changes to pilon.changes [pilon] Writing updated NODE_8298_length_405_cov_1.510563_pilon to pilon.fasta [pilon] Writing NODE_8299_length_405_cov_0.338028:1-405 changes to pilon.changes [pilon] Writing updated NODE_8299_length_405_cov_0.338028_pilon to pilon.fasta [pilon] Writing NODE_8300_length_404_cov_66.257951:1-404 changes to pilon.changes [pilon] Writing updated NODE_8300_length_404_cov_66.257951_pilon to pilon.fasta [pilon] Writing NODE_8301_length_404_cov_51.600707:1-404 changes to pilon.changes [pilon] Writing updated NODE_8301_length_404_cov_51.600707_pilon to pilon.fasta [pilon] Writing NODE_8302_length_404_cov_41.565371:1-404 changes to pilon.changes [pilon] Writing updated NODE_8302_length_404_cov_41.565371_pilon to pilon.fasta [pilon] Writing NODE_8303_length_404_cov_40.424028:1-404 changes to pilon.changes [pilon] Writing updated NODE_8303_length_404_cov_40.424028_pilon to pilon.fasta [pilon] Writing NODE_8304_length_404_cov_27.498233:1-404 changes to pilon.changes [pilon] Writing updated NODE_8304_length_404_cov_27.498233_pilon to pilon.fasta [pilon] Writing NODE_8305_length_404_cov_19.939929:1-404 changes to pilon.changes [pilon] Writing updated NODE_8305_length_404_cov_19.939929_pilon to pilon.fasta [pilon] Writing NODE_8306_length_404_cov_17.250883:1-404 changes to pilon.changes [pilon] Writing updated NODE_8306_length_404_cov_17.250883_pilon to pilon.fasta [pilon] Writing NODE_8307_length_404_cov_15.657244:1-404 changes to pilon.changes [pilon] Writing updated NODE_8307_length_404_cov_15.657244_pilon to pilon.fasta [pilon] Writing NODE_8308_length_404_cov_10.081272:1-404 changes to pilon.changes [pilon] Writing updated NODE_8308_length_404_cov_10.081272_pilon to pilon.fasta [pilon] Writing NODE_8309_length_404_cov_8.809187:1-404 changes to pilon.changes [pilon] Writing updated NODE_8309_length_404_cov_8.809187_pilon to pilon.fasta [pilon] Writing NODE_8310_length_404_cov_5.024735:1-404 changes to pilon.changes [pilon] Writing updated NODE_8310_length_404_cov_5.024735_pilon to pilon.fasta [pilon] Writing NODE_8311_length_404_cov_3.696113:1-404 changes to pilon.changes [pilon] Writing updated NODE_8311_length_404_cov_3.696113_pilon to pilon.fasta [pilon] Writing NODE_8312_length_404_cov_2.254417:1-404 changes to pilon.changes [pilon] Writing updated NODE_8312_length_404_cov_2.254417_pilon to pilon.fasta [pilon] Writing NODE_8313_length_404_cov_2.141343:1-404 changes to pilon.changes [pilon] Writing updated NODE_8313_length_404_cov_2.141343_pilon to pilon.fasta [pilon] Writing NODE_8314_length_404_cov_1.367491:1-404 changes to pilon.changes [pilon] Writing updated NODE_8314_length_404_cov_1.367491_pilon to pilon.fasta [pilon] Writing NODE_8315_length_404_cov_1.042403:1-404 changes to pilon.changes [pilon] Writing updated NODE_8315_length_404_cov_1.042403_pilon to pilon.fasta [pilon] Writing NODE_8316_length_404_cov_0.681979:1-404 changes to pilon.changes [pilon] Writing updated NODE_8316_length_404_cov_0.681979_pilon to pilon.fasta [pilon] Writing NODE_8317_length_403_cov_58.911348:1-403 changes to pilon.changes [pilon] Writing updated NODE_8317_length_403_cov_58.911348_pilon to pilon.fasta [pilon] Writing NODE_8318_length_403_cov_57.010638:1-403 changes to pilon.changes [pilon] Writing updated NODE_8318_length_403_cov_57.010638_pilon to pilon.fasta [pilon] Writing NODE_8319_length_403_cov_43.400709:1-403 changes to pilon.changes [pilon] Writing updated NODE_8319_length_403_cov_43.400709_pilon to pilon.fasta [pilon] Writing NODE_8320_length_403_cov_36.223404:1-403 changes to pilon.changes [pilon] Writing updated NODE_8320_length_403_cov_36.223404_pilon to pilon.fasta [pilon] Writing NODE_8321_length_403_cov_26.312057:1-403 changes to pilon.changes [pilon] Writing updated NODE_8321_length_403_cov_26.312057_pilon to pilon.fasta [pilon] Writing NODE_8322_length_403_cov_24.716312:1-403 changes to pilon.changes [pilon] Writing updated NODE_8322_length_403_cov_24.716312_pilon to pilon.fasta [pilon] Writing NODE_8323_length_403_cov_24.347518:1-403 changes to pilon.changes [pilon] Writing updated NODE_8323_length_403_cov_24.347518_pilon to pilon.fasta [pilon] Writing NODE_8324_length_403_cov_21.035461:1-403 changes to pilon.changes [pilon] Writing updated NODE_8324_length_403_cov_21.035461_pilon to pilon.fasta [pilon] Writing NODE_8325_length_403_cov_13.528369:1-403 changes to pilon.changes [pilon] Writing updated NODE_8325_length_403_cov_13.528369_pilon to pilon.fasta [pilon] Writing NODE_8326_length_403_cov_13.117021:1-403 changes to pilon.changes [pilon] Writing updated NODE_8326_length_403_cov_13.117021_pilon to pilon.fasta [pilon] Writing NODE_8327_length_403_cov_12.531915:1-403 changes to pilon.changes [pilon] Writing updated NODE_8327_length_403_cov_12.531915_pilon to pilon.fasta [pilon] Writing NODE_8328_length_403_cov_8.070922:1-403 changes to pilon.changes [pilon] Writing updated NODE_8328_length_403_cov_8.070922_pilon to pilon.fasta [pilon] Writing NODE_8329_length_403_cov_4.663121:1-403 changes to pilon.changes [pilon] Writing updated NODE_8329_length_403_cov_4.663121_pilon to pilon.fasta [pilon] Writing NODE_8330_length_403_cov_2.787234:1-403 changes to pilon.changes [pilon] Writing updated NODE_8330_length_403_cov_2.787234_pilon to pilon.fasta [pilon] Writing NODE_8331_length_403_cov_2.666667:1-403 changes to pilon.changes [pilon] Writing updated NODE_8331_length_403_cov_2.666667_pilon to pilon.fasta [pilon] Writing NODE_8332_length_403_cov_2.556738:1-403 changes to pilon.changes [pilon] Writing updated NODE_8332_length_403_cov_2.556738_pilon to pilon.fasta [pilon] Writing NODE_8333_length_403_cov_1.847518:1-403 changes to pilon.changes [pilon] Writing updated NODE_8333_length_403_cov_1.847518_pilon to pilon.fasta [pilon] Writing NODE_8334_length_403_cov_1.631206:1-403 changes to pilon.changes [pilon] Writing updated NODE_8334_length_403_cov_1.631206_pilon to pilon.fasta [pilon] Writing NODE_8335_length_403_cov_1.539007:1-403 changes to pilon.changes [pilon] Writing updated NODE_8335_length_403_cov_1.539007_pilon to pilon.fasta [pilon] Writing NODE_8336_length_403_cov_1.251773:1-403 changes to pilon.changes [pilon] Writing updated NODE_8336_length_403_cov_1.251773_pilon to pilon.fasta [pilon] Writing NODE_8337_length_403_cov_1.010638:1-403 changes to pilon.changes [pilon] Writing updated NODE_8337_length_403_cov_1.010638_pilon to pilon.fasta [pilon] Writing NODE_8338_length_403_cov_0.929078:1-403 changes to pilon.changes [pilon] Writing updated NODE_8338_length_403_cov_0.929078_pilon to pilon.fasta [pilon] Writing NODE_8339_length_403_cov_0.875887:1-403 changes to pilon.changes [pilon] Writing updated NODE_8339_length_403_cov_0.875887_pilon to pilon.fasta [pilon] Writing NODE_8340_length_403_cov_0.737589:1-403 changes to pilon.changes [pilon] Writing updated NODE_8340_length_403_cov_0.737589_pilon to pilon.fasta [pilon] Writing NODE_8341_length_403_cov_0.716312:1-403 changes to pilon.changes [pilon] Writing updated NODE_8341_length_403_cov_0.716312_pilon to pilon.fasta [pilon] Writing NODE_8342_length_403_cov_0.677305:1-403 changes to pilon.changes [pilon] Writing updated NODE_8342_length_403_cov_0.677305_pilon to pilon.fasta [pilon] Writing NODE_8343_length_403_cov_0.173759:1-403 changes to pilon.changes [pilon] Writing updated NODE_8343_length_403_cov_0.173759_pilon to pilon.fasta [pilon] Writing NODE_8344_length_402_cov_50.615658:1-402 changes to pilon.changes [pilon] Writing updated NODE_8344_length_402_cov_50.615658_pilon to pilon.fasta [pilon] Writing NODE_8345_length_402_cov_47.604982:1-402 changes to pilon.changes [pilon] Writing updated NODE_8345_length_402_cov_47.604982_pilon to pilon.fasta [pilon] Writing NODE_8346_length_402_cov_40.174377:1-402 changes to pilon.changes [pilon] Writing updated NODE_8346_length_402_cov_40.174377_pilon to pilon.fasta [pilon] Writing NODE_8347_length_402_cov_34.537367:1-402 changes to pilon.changes [pilon] Writing updated NODE_8347_length_402_cov_34.537367_pilon to pilon.fasta [pilon] Writing NODE_8348_length_402_cov_32.626335:1-402 changes to pilon.changes [pilon] Writing updated NODE_8348_length_402_cov_32.626335_pilon to pilon.fasta [pilon] Writing NODE_8349_length_402_cov_30.587189:1-402 changes to pilon.changes [pilon] Writing updated NODE_8349_length_402_cov_30.587189_pilon to pilon.fasta [pilon] Writing NODE_8350_length_402_cov_27.359431:1-402 changes to pilon.changes [pilon] Writing updated NODE_8350_length_402_cov_27.359431_pilon to pilon.fasta [pilon] Writing NODE_8351_length_402_cov_26.167260:1-402 changes to pilon.changes [pilon] Writing updated NODE_8351_length_402_cov_26.167260_pilon to pilon.fasta [pilon] Writing NODE_8352_length_402_cov_25.256228:1-402 changes to pilon.changes [pilon] Writing updated NODE_8352_length_402_cov_25.256228_pilon to pilon.fasta [pilon] Writing NODE_8353_length_402_cov_22.498221:1-402 changes to pilon.changes [pilon] Writing updated NODE_8353_length_402_cov_22.498221_pilon to pilon.fasta [pilon] Writing NODE_8354_length_402_cov_22.373665:1-402 changes to pilon.changes [pilon] Writing updated NODE_8354_length_402_cov_22.373665_pilon to pilon.fasta [pilon] Writing NODE_8355_length_402_cov_21.982206:1-402 changes to pilon.changes [pilon] Writing updated NODE_8355_length_402_cov_21.982206_pilon to pilon.fasta [pilon] Writing NODE_8356_length_402_cov_20.316726:1-402 changes to pilon.changes [pilon] Writing updated NODE_8356_length_402_cov_20.316726_pilon to pilon.fasta [pilon] Writing NODE_8357_length_402_cov_20.085409:1-402 changes to pilon.changes [pilon] Writing updated NODE_8357_length_402_cov_20.085409_pilon to pilon.fasta [pilon] Writing NODE_8358_length_402_cov_19.035587:1-402 changes to pilon.changes [pilon] Writing updated NODE_8358_length_402_cov_19.035587_pilon to pilon.fasta [pilon] Writing NODE_8359_length_402_cov_18.473310:1-402 changes to pilon.changes [pilon] Writing updated NODE_8359_length_402_cov_18.473310_pilon to pilon.fasta [pilon] Writing NODE_8360_length_402_cov_17.491103:1-402 changes to pilon.changes [pilon] Writing updated NODE_8360_length_402_cov_17.491103_pilon to pilon.fasta [pilon] Writing NODE_8361_length_402_cov_17.156584:1-402 changes to pilon.changes [pilon] Writing updated NODE_8361_length_402_cov_17.156584_pilon to pilon.fasta [pilon] Writing NODE_8362_length_402_cov_17.064057:1-402 changes to pilon.changes [pilon] Writing updated NODE_8362_length_402_cov_17.064057_pilon to pilon.fasta [pilon] Writing NODE_8363_length_402_cov_13.914591:1-402 changes to pilon.changes [pilon] Writing updated NODE_8363_length_402_cov_13.914591_pilon to pilon.fasta [pilon] Writing NODE_8364_length_402_cov_12.402135:1-402 changes to pilon.changes [pilon] Writing updated NODE_8364_length_402_cov_12.402135_pilon to pilon.fasta [pilon] Writing NODE_8365_length_402_cov_11.754448:1-402 changes to pilon.changes [pilon] Writing updated NODE_8365_length_402_cov_11.754448_pilon to pilon.fasta [pilon] Writing NODE_8366_length_402_cov_8.437722:1-402 changes to pilon.changes [pilon] Writing updated NODE_8366_length_402_cov_8.437722_pilon to pilon.fasta [pilon] Writing NODE_8367_length_402_cov_6.950178:1-402 changes to pilon.changes [pilon] Writing updated NODE_8367_length_402_cov_6.950178_pilon to pilon.fasta [pilon] Writing NODE_8368_length_402_cov_2.893238:1-402 changes to pilon.changes [pilon] Writing updated NODE_8368_length_402_cov_2.893238_pilon to pilon.fasta [pilon] Writing NODE_8369_length_402_cov_1.736655:1-402 changes to pilon.changes [pilon] Writing updated NODE_8369_length_402_cov_1.736655_pilon to pilon.fasta [pilon] Writing NODE_8370_length_402_cov_1.654804:1-402 changes to pilon.changes [pilon] Writing updated NODE_8370_length_402_cov_1.654804_pilon to pilon.fasta [pilon] Writing NODE_8371_length_402_cov_1.615658:1-402 changes to pilon.changes [pilon] Writing updated NODE_8371_length_402_cov_1.615658_pilon to pilon.fasta [pilon] Writing NODE_8372_length_402_cov_1.519573:1-402 changes to pilon.changes [pilon] Writing updated NODE_8372_length_402_cov_1.519573_pilon to pilon.fasta [pilon] Writing NODE_8373_length_402_cov_1.042705:1-402 changes to pilon.changes [pilon] Writing updated NODE_8373_length_402_cov_1.042705_pilon to pilon.fasta [pilon] Writing NODE_8374_length_402_cov_0.918149:1-402 changes to pilon.changes [pilon] Writing updated NODE_8374_length_402_cov_0.918149_pilon to pilon.fasta [pilon] Writing NODE_8375_length_402_cov_0.761566:1-402 changes to pilon.changes [pilon] Writing updated NODE_8375_length_402_cov_0.761566_pilon to pilon.fasta [pilon] Writing NODE_8376_length_402_cov_0.551601:1-402 changes to pilon.changes [pilon] Writing updated NODE_8376_length_402_cov_0.551601_pilon to pilon.fasta [pilon] Writing NODE_8377_length_401_cov_58.971429:1-401 changes to pilon.changes [pilon] Writing updated NODE_8377_length_401_cov_58.971429_pilon to pilon.fasta [pilon] Writing NODE_8378_length_401_cov_30.885714:1-401 changes to pilon.changes [pilon] Writing updated NODE_8378_length_401_cov_30.885714_pilon to pilon.fasta [pilon] Writing NODE_8379_length_401_cov_30.139286:1-401 changes to pilon.changes [pilon] Writing updated NODE_8379_length_401_cov_30.139286_pilon to pilon.fasta [pilon] Writing NODE_8380_length_401_cov_23.142857:1-401 changes to pilon.changes [pilon] Writing updated NODE_8380_length_401_cov_23.142857_pilon to pilon.fasta [pilon] Writing NODE_8381_length_401_cov_20.503571:1-401 changes to pilon.changes [pilon] Writing updated NODE_8381_length_401_cov_20.503571_pilon to pilon.fasta [pilon] Writing NODE_8382_length_401_cov_11.000000:1-401 changes to pilon.changes [pilon] Writing updated NODE_8382_length_401_cov_11.000000_pilon to pilon.fasta [pilon] Writing NODE_8383_length_401_cov_6.464286:1-401 changes to pilon.changes [pilon] Writing updated NODE_8383_length_401_cov_6.464286_pilon to pilon.fasta [pilon] Writing NODE_8384_length_401_cov_4.517857:1-401 changes to pilon.changes [pilon] Writing updated NODE_8384_length_401_cov_4.517857_pilon to pilon.fasta [pilon] Writing NODE_8385_length_400_cov_45.376344:1-400 changes to pilon.changes [pilon] Writing updated NODE_8385_length_400_cov_45.376344_pilon to pilon.fasta [pilon] Writing NODE_8386_length_400_cov_39.946237:1-400 changes to pilon.changes [pilon] Writing updated NODE_8386_length_400_cov_39.946237_pilon to pilon.fasta [pilon] Writing NODE_8387_length_400_cov_39.817204:1-400 changes to pilon.changes [pilon] Writing updated NODE_8387_length_400_cov_39.817204_pilon to pilon.fasta [pilon] Writing NODE_8388_length_400_cov_25.430108:1-400 changes to pilon.changes [pilon] Writing updated NODE_8388_length_400_cov_25.430108_pilon to pilon.fasta [pilon] Writing NODE_8389_length_400_cov_25.315412:1-400 changes to pilon.changes [pilon] Writing updated NODE_8389_length_400_cov_25.315412_pilon to pilon.fasta [pilon] Writing NODE_8390_length_400_cov_20.000000:1-400 changes to pilon.changes [pilon] Writing updated NODE_8390_length_400_cov_20.000000_pilon to pilon.fasta [pilon] Writing NODE_8391_length_400_cov_15.534050:1-400 changes to pilon.changes [pilon] Writing updated NODE_8391_length_400_cov_15.534050_pilon to pilon.fasta [pilon] Writing NODE_8392_length_400_cov_12.670251:1-400 changes to pilon.changes [pilon] Writing updated NODE_8392_length_400_cov_12.670251_pilon to pilon.fasta [pilon] Writing NODE_8393_length_400_cov_12.311828:1-400 changes to pilon.changes [pilon] Writing updated NODE_8393_length_400_cov_12.311828_pilon to pilon.fasta [pilon] Writing NODE_8394_length_400_cov_12.050179:1-400 changes to pilon.changes [pilon] Writing updated NODE_8394_length_400_cov_12.050179_pilon to pilon.fasta [pilon] Writing NODE_8395_length_400_cov_7.939068:1-400 changes to pilon.changes [pilon] Writing updated NODE_8395_length_400_cov_7.939068_pilon to pilon.fasta [pilon] Writing NODE_8396_length_399_cov_37.665468:1-399 changes to pilon.changes [pilon] Writing updated NODE_8396_length_399_cov_37.665468_pilon to pilon.fasta [pilon] Writing NODE_8397_length_399_cov_35.068345:1-399 changes to pilon.changes [pilon] Writing updated NODE_8397_length_399_cov_35.068345_pilon to pilon.fasta [pilon] Writing NODE_8398_length_399_cov_34.949640:1-399 changes to pilon.changes [pilon] Writing updated NODE_8398_length_399_cov_34.949640_pilon to pilon.fasta [pilon] Writing NODE_8399_length_399_cov_33.111511:1-399 changes to pilon.changes [pilon] Writing updated NODE_8399_length_399_cov_33.111511_pilon to pilon.fasta [pilon] Writing NODE_8400_length_399_cov_26.827338:1-399 changes to pilon.changes [pilon] Writing updated NODE_8400_length_399_cov_26.827338_pilon to pilon.fasta [pilon] Writing NODE_8401_length_399_cov_26.226619:1-399 changes to pilon.changes [pilon] Writing updated NODE_8401_length_399_cov_26.226619_pilon to pilon.fasta [pilon] Writing NODE_8402_length_399_cov_23.992806:1-399 changes to pilon.changes [pilon] Writing updated NODE_8402_length_399_cov_23.992806_pilon to pilon.fasta [pilon] Writing NODE_8403_length_399_cov_22.870504:1-399 changes to pilon.changes [pilon] Writing updated NODE_8403_length_399_cov_22.870504_pilon to pilon.fasta [pilon] Writing NODE_8404_length_399_cov_21.697842:1-399 changes to pilon.changes [pilon] Writing updated NODE_8404_length_399_cov_21.697842_pilon to pilon.fasta [pilon] Writing NODE_8405_length_399_cov_20.733813:1-399 changes to pilon.changes [pilon] Writing updated NODE_8405_length_399_cov_20.733813_pilon to pilon.fasta [pilon] Writing NODE_8406_length_399_cov_20.690647:1-399 changes to pilon.changes [pilon] Writing updated NODE_8406_length_399_cov_20.690647_pilon to pilon.fasta [pilon] Writing NODE_8407_length_399_cov_17.841727:1-399 changes to pilon.changes [pilon] Writing updated NODE_8407_length_399_cov_17.841727_pilon to pilon.fasta [pilon] Writing NODE_8408_length_399_cov_17.068345:1-399 changes to pilon.changes [pilon] Writing updated NODE_8408_length_399_cov_17.068345_pilon to pilon.fasta [pilon] Writing NODE_8409_length_399_cov_15.852518:1-399 changes to pilon.changes [pilon] Writing updated NODE_8409_length_399_cov_15.852518_pilon to pilon.fasta [pilon] Writing NODE_8410_length_399_cov_15.284173:1-399 changes to pilon.changes [pilon] Writing updated NODE_8410_length_399_cov_15.284173_pilon to pilon.fasta [pilon] Writing NODE_8411_length_399_cov_14.960432:1-399 changes to pilon.changes [pilon] Writing updated NODE_8411_length_399_cov_14.960432_pilon to pilon.fasta [pilon] Writing NODE_8412_length_399_cov_14.248201:1-399 changes to pilon.changes [pilon] Writing updated NODE_8412_length_399_cov_14.248201_pilon to pilon.fasta [pilon] Writing NODE_8413_length_399_cov_13.906475:1-399 changes to pilon.changes [pilon] Writing updated NODE_8413_length_399_cov_13.906475_pilon to pilon.fasta [pilon] Writing NODE_8414_length_399_cov_11.928058:1-399 changes to pilon.changes [pilon] Writing updated NODE_8414_length_399_cov_11.928058_pilon to pilon.fasta [pilon] Writing NODE_8415_length_399_cov_9.658273:1-399 changes to pilon.changes [pilon] Writing updated NODE_8415_length_399_cov_9.658273_pilon to pilon.fasta [pilon] Writing NODE_8416_length_398_cov_64.638989:1-398 changes to pilon.changes [pilon] Writing updated NODE_8416_length_398_cov_64.638989_pilon to pilon.fasta [pilon] Writing NODE_8417_length_398_cov_60.592058:1-398 changes to pilon.changes [pilon] Writing updated NODE_8417_length_398_cov_60.592058_pilon to pilon.fasta [pilon] Writing NODE_8418_length_398_cov_58.870036:1-398 changes to pilon.changes [pilon] Writing updated NODE_8418_length_398_cov_58.870036_pilon to pilon.fasta [pilon] Writing NODE_8419_length_398_cov_51.223827:1-398 changes to pilon.changes [pilon] Writing updated NODE_8419_length_398_cov_51.223827_pilon to pilon.fasta [pilon] Writing NODE_8420_length_398_cov_43.083032:1-398 changes to pilon.changes [pilon] Writing updated NODE_8420_length_398_cov_43.083032_pilon to pilon.fasta [pilon] Writing NODE_8421_length_398_cov_29.635379:1-398 changes to pilon.changes [pilon] Writing updated NODE_8421_length_398_cov_29.635379_pilon to pilon.fasta [pilon] Writing NODE_8422_length_398_cov_29.321300:1-398 changes to pilon.changes [pilon] Writing updated NODE_8422_length_398_cov_29.321300_pilon to pilon.fasta [pilon] Writing NODE_8423_length_398_cov_25.848375:1-398 changes to pilon.changes [pilon] Writing updated NODE_8423_length_398_cov_25.848375_pilon to pilon.fasta [pilon] Writing NODE_8424_length_398_cov_24.602888:1-398 changes to pilon.changes [pilon] Writing updated NODE_8424_length_398_cov_24.602888_pilon to pilon.fasta [pilon] Writing NODE_8425_length_398_cov_22.797834:1-398 changes to pilon.changes [pilon] Writing updated NODE_8425_length_398_cov_22.797834_pilon to pilon.fasta [pilon] Writing NODE_8426_length_398_cov_22.310469:1-398 changes to pilon.changes [pilon] Writing updated NODE_8426_length_398_cov_22.310469_pilon to pilon.fasta [pilon] Writing NODE_8427_length_398_cov_21.552347:1-398 changes to pilon.changes [pilon] Writing updated NODE_8427_length_398_cov_21.552347_pilon to pilon.fasta [pilon] Writing NODE_8428_length_398_cov_21.061372:1-398 changes to pilon.changes [pilon] Writing updated NODE_8428_length_398_cov_21.061372_pilon to pilon.fasta [pilon] Writing NODE_8429_length_398_cov_20.750903:1-398 changes to pilon.changes [pilon] Writing updated NODE_8429_length_398_cov_20.750903_pilon to pilon.fasta [pilon] Writing NODE_8430_length_398_cov_19.292419:1-398 changes to pilon.changes [pilon] Writing updated NODE_8430_length_398_cov_19.292419_pilon to pilon.fasta [pilon] Writing NODE_8431_length_398_cov_18.927798:1-398 changes to pilon.changes [pilon] Writing updated NODE_8431_length_398_cov_18.927798_pilon to pilon.fasta [pilon] Writing NODE_8432_length_398_cov_18.422383:1-398 changes to pilon.changes [pilon] Writing updated NODE_8432_length_398_cov_18.422383_pilon to pilon.fasta [pilon] Writing NODE_8433_length_398_cov_13.249097:1-398 changes to pilon.changes [pilon] Writing updated NODE_8433_length_398_cov_13.249097_pilon to pilon.fasta [pilon] Writing NODE_8434_length_398_cov_12.516245:1-398 changes to pilon.changes [pilon] Writing updated NODE_8434_length_398_cov_12.516245_pilon to pilon.fasta [pilon] Writing NODE_8435_length_398_cov_10.342960:1-398 changes to pilon.changes [pilon] Writing updated NODE_8435_length_398_cov_10.342960_pilon to pilon.fasta [pilon] Writing NODE_8436_length_398_cov_9.772563:1-398 changes to pilon.changes [pilon] Writing updated NODE_8436_length_398_cov_9.772563_pilon to pilon.fasta [pilon] Writing NODE_8437_length_398_cov_7.631769:1-398 changes to pilon.changes [pilon] Writing updated NODE_8437_length_398_cov_7.631769_pilon to pilon.fasta [pilon] Writing NODE_8438_length_398_cov_6.166065:1-398 changes to pilon.changes [pilon] Writing updated NODE_8438_length_398_cov_6.166065_pilon to pilon.fasta [pilon] Writing NODE_8439_length_397_cov_24.594203:1-397 changes to pilon.changes [pilon] Writing updated NODE_8439_length_397_cov_24.594203_pilon to pilon.fasta [pilon] Writing NODE_8440_length_397_cov_23.184783:1-397 changes to pilon.changes [pilon] Writing updated NODE_8440_length_397_cov_23.184783_pilon to pilon.fasta [pilon] Writing NODE_8441_length_397_cov_21.550725:1-397 changes to pilon.changes [pilon] Writing updated NODE_8441_length_397_cov_21.550725_pilon to pilon.fasta [pilon] Writing NODE_8442_length_397_cov_21.021739:1-397 changes to pilon.changes [pilon] Writing updated NODE_8442_length_397_cov_21.021739_pilon to pilon.fasta [pilon] Writing NODE_8443_length_397_cov_15.902174:1-397 changes to pilon.changes [pilon] Writing updated NODE_8443_length_397_cov_15.902174_pilon to pilon.fasta [pilon] Writing NODE_8444_length_397_cov_14.456522:1-397 changes to pilon.changes [pilon] Writing updated NODE_8444_length_397_cov_14.456522_pilon to pilon.fasta [pilon] Writing NODE_8445_length_397_cov_12.721014:1-397 changes to pilon.changes [pilon] Writing updated NODE_8445_length_397_cov_12.721014_pilon to pilon.fasta [pilon] Writing NODE_8446_length_397_cov_11.920290:1-397 changes to pilon.changes [pilon] Writing updated NODE_8446_length_397_cov_11.920290_pilon to pilon.fasta [pilon] Writing NODE_8447_length_397_cov_11.333333:1-397 changes to pilon.changes [pilon] Writing updated NODE_8447_length_397_cov_11.333333_pilon to pilon.fasta [pilon] Writing NODE_8448_length_397_cov_10.246377:1-397 changes to pilon.changes [pilon] Writing updated NODE_8448_length_397_cov_10.246377_pilon to pilon.fasta [pilon] Writing NODE_8449_length_396_cov_71.370909:1-396 changes to pilon.changes [pilon] Writing updated NODE_8449_length_396_cov_71.370909_pilon to pilon.fasta [pilon] Writing NODE_8450_length_396_cov_38.469091:1-396 changes to pilon.changes [pilon] Writing updated NODE_8450_length_396_cov_38.469091_pilon to pilon.fasta [pilon] Writing NODE_8451_length_396_cov_27.305455:1-396 changes to pilon.changes [pilon] Writing updated NODE_8451_length_396_cov_27.305455_pilon to pilon.fasta [pilon] Writing NODE_8452_length_396_cov_23.618182:1-396 changes to pilon.changes [pilon] Writing updated NODE_8452_length_396_cov_23.618182_pilon to pilon.fasta [pilon] Writing NODE_8453_length_396_cov_20.345455:1-396 changes to pilon.changes [pilon] Writing updated NODE_8453_length_396_cov_20.345455_pilon to pilon.fasta [pilon] Writing NODE_8454_length_396_cov_20.058182:1-396 changes to pilon.changes [pilon] Writing updated NODE_8454_length_396_cov_20.058182_pilon to pilon.fasta [pilon] Writing NODE_8455_length_396_cov_20.047273:1-396 changes to pilon.changes [pilon] Writing updated NODE_8455_length_396_cov_20.047273_pilon to pilon.fasta [pilon] Writing NODE_8456_length_396_cov_17.421818:1-396 changes to pilon.changes [pilon] Writing updated NODE_8456_length_396_cov_17.421818_pilon to pilon.fasta [pilon] Writing NODE_8457_length_396_cov_16.829091:1-396 changes to pilon.changes [pilon] Writing updated NODE_8457_length_396_cov_16.829091_pilon to pilon.fasta [pilon] Writing NODE_8458_length_396_cov_16.818182:1-396 changes to pilon.changes [pilon] Writing updated NODE_8458_length_396_cov_16.818182_pilon to pilon.fasta [pilon] Writing NODE_8459_length_396_cov_16.370909:1-396 changes to pilon.changes [pilon] Writing updated NODE_8459_length_396_cov_16.370909_pilon to pilon.fasta [pilon] Writing NODE_8460_length_396_cov_15.516364:1-396 changes to pilon.changes [pilon] Writing updated NODE_8460_length_396_cov_15.516364_pilon to pilon.fasta [pilon] Writing NODE_8461_length_396_cov_15.229091:1-396 changes to pilon.changes [pilon] Writing updated NODE_8461_length_396_cov_15.229091_pilon to pilon.fasta [pilon] Writing NODE_8462_length_396_cov_14.181818:1-396 changes to pilon.changes [pilon] Writing updated NODE_8462_length_396_cov_14.181818_pilon to pilon.fasta [pilon] Writing NODE_8463_length_396_cov_13.149091:1-396 changes to pilon.changes [pilon] Writing updated NODE_8463_length_396_cov_13.149091_pilon to pilon.fasta [pilon] Writing NODE_8464_length_396_cov_12.923636:1-396 changes to pilon.changes [pilon] Writing updated NODE_8464_length_396_cov_12.923636_pilon to pilon.fasta [pilon] Writing NODE_8465_length_396_cov_12.665455:1-396 changes to pilon.changes [pilon] Writing updated NODE_8465_length_396_cov_12.665455_pilon to pilon.fasta [pilon] Writing NODE_8466_length_396_cov_10.036364:1-396 changes to pilon.changes [pilon] Writing updated NODE_8466_length_396_cov_10.036364_pilon to pilon.fasta [pilon] Writing NODE_8467_length_396_cov_9.505455:1-396 changes to pilon.changes [pilon] Writing updated NODE_8467_length_396_cov_9.505455_pilon to pilon.fasta [pilon] Writing NODE_8468_length_396_cov_9.392727:1-396 changes to pilon.changes [pilon] Writing updated NODE_8468_length_396_cov_9.392727_pilon to pilon.fasta [pilon] Writing NODE_8469_length_395_cov_70.281022:1-395 changes to pilon.changes [pilon] Writing updated NODE_8469_length_395_cov_70.281022_pilon to pilon.fasta [pilon] Writing NODE_8470_length_395_cov_54.492701:1-395 changes to pilon.changes [pilon] Writing updated NODE_8470_length_395_cov_54.492701_pilon to pilon.fasta [pilon] Writing NODE_8471_length_395_cov_46.343066:1-395 changes to pilon.changes [pilon] Writing updated NODE_8471_length_395_cov_46.343066_pilon to pilon.fasta [pilon] Writing NODE_8472_length_395_cov_32.266423:1-395 changes to pilon.changes [pilon] Writing updated NODE_8472_length_395_cov_32.266423_pilon to pilon.fasta [pilon] Writing NODE_8473_length_395_cov_30.919708:1-395 changes to pilon.changes [pilon] Writing updated NODE_8473_length_395_cov_30.919708_pilon to pilon.fasta [pilon] Writing NODE_8474_length_395_cov_27.412409:1-395 changes to pilon.changes [pilon] Writing updated NODE_8474_length_395_cov_27.412409_pilon to pilon.fasta [pilon] Writing NODE_8475_length_395_cov_26.638686:1-395 changes to pilon.changes [pilon] Writing updated NODE_8475_length_395_cov_26.638686_pilon to pilon.fasta [pilon] Writing NODE_8476_length_395_cov_26.354015:1-395 changes to pilon.changes [pilon] Writing updated NODE_8476_length_395_cov_26.354015_pilon to pilon.fasta [pilon] Writing NODE_8477_length_395_cov_25.186131:1-395 changes to pilon.changes [pilon] Writing updated NODE_8477_length_395_cov_25.186131_pilon to pilon.fasta [pilon] Writing NODE_8478_length_395_cov_24.145985:1-395 changes to pilon.changes [pilon] Writing updated NODE_8478_length_395_cov_24.145985_pilon to pilon.fasta [pilon] Writing NODE_8479_length_395_cov_21.507299:1-395 changes to pilon.changes [pilon] Writing updated NODE_8479_length_395_cov_21.507299_pilon to pilon.fasta [pilon] Writing NODE_8480_length_395_cov_16.251825:1-395 changes to pilon.changes [pilon] Writing updated NODE_8480_length_395_cov_16.251825_pilon to pilon.fasta [pilon] Writing NODE_8481_length_395_cov_15.788321:1-395 changes to pilon.changes [pilon] Writing updated NODE_8481_length_395_cov_15.788321_pilon to pilon.fasta [pilon] Writing NODE_8482_length_395_cov_15.171533:1-395 changes to pilon.changes [pilon] Writing updated NODE_8482_length_395_cov_15.171533_pilon to pilon.fasta [pilon] Writing NODE_8483_length_395_cov_14.653285:1-395 changes to pilon.changes [pilon] Writing updated NODE_8483_length_395_cov_14.653285_pilon to pilon.fasta [pilon] Writing NODE_8484_length_395_cov_10.503650:1-395 changes to pilon.changes [pilon] Writing updated NODE_8484_length_395_cov_10.503650_pilon to pilon.fasta [pilon] Writing NODE_8485_length_395_cov_10.496350:1-395 changes to pilon.changes [pilon] Writing updated NODE_8485_length_395_cov_10.496350_pilon to pilon.fasta [pilon] Writing NODE_8486_length_395_cov_7.916058:1-395 changes to pilon.changes [pilon] Writing updated NODE_8486_length_395_cov_7.916058_pilon to pilon.fasta [pilon] Writing NODE_8487_length_395_cov_4.700730:1-395 changes to pilon.changes [pilon] Writing updated NODE_8487_length_395_cov_4.700730_pilon to pilon.fasta [pilon] Writing NODE_8488_length_394_cov_52.175824:1-394 changes to pilon.changes [pilon] Writing updated NODE_8488_length_394_cov_52.175824_pilon to pilon.fasta [pilon] Writing NODE_8489_length_394_cov_46.582418:1-394 changes to pilon.changes [pilon] Writing updated NODE_8489_length_394_cov_46.582418_pilon to pilon.fasta [pilon] Writing NODE_8490_length_394_cov_37.545788:1-394 changes to pilon.changes [pilon] Writing updated NODE_8490_length_394_cov_37.545788_pilon to pilon.fasta [pilon] Writing NODE_8491_length_394_cov_32.150183:1-394 changes to pilon.changes [pilon] Writing updated NODE_8491_length_394_cov_32.150183_pilon to pilon.fasta [pilon] Writing NODE_8492_length_394_cov_23.194139:1-394 changes to pilon.changes [pilon] Writing updated NODE_8492_length_394_cov_23.194139_pilon to pilon.fasta [pilon] Writing NODE_8493_length_394_cov_21.567766:1-394 changes to pilon.changes [pilon] Writing updated NODE_8493_length_394_cov_21.567766_pilon to pilon.fasta [pilon] Writing NODE_8494_length_394_cov_19.648352:1-394 changes to pilon.changes [pilon] Writing updated NODE_8494_length_394_cov_19.648352_pilon to pilon.fasta [pilon] Writing NODE_8495_length_394_cov_19.124542:1-394 changes to pilon.changes [pilon] Writing updated NODE_8495_length_394_cov_19.124542_pilon to pilon.fasta [pilon] Writing NODE_8496_length_394_cov_16.190476:1-394 changes to pilon.changes [pilon] Writing updated NODE_8496_length_394_cov_16.190476_pilon to pilon.fasta [pilon] Writing NODE_8497_length_394_cov_14.864469:1-394 changes to pilon.changes [pilon] Writing updated NODE_8497_length_394_cov_14.864469_pilon to pilon.fasta [pilon] Writing NODE_8498_length_394_cov_13.318681:1-394 changes to pilon.changes [pilon] Writing updated NODE_8498_length_394_cov_13.318681_pilon to pilon.fasta [pilon] Writing NODE_8499_length_394_cov_13.238095:1-394 changes to pilon.changes [pilon] Writing updated NODE_8499_length_394_cov_13.238095_pilon to pilon.fasta [pilon] Writing NODE_8500_length_394_cov_7.117216:1-394 changes to pilon.changes [pilon] Writing updated NODE_8500_length_394_cov_7.117216_pilon to pilon.fasta [pilon] Writing NODE_8501_length_393_cov_65.551471:1-393 changes to pilon.changes [pilon] Writing updated NODE_8501_length_393_cov_65.551471_pilon to pilon.fasta [pilon] Writing NODE_8502_length_393_cov_44.242647:1-393 changes to pilon.changes [pilon] Writing updated NODE_8502_length_393_cov_44.242647_pilon to pilon.fasta [pilon] Writing NODE_8503_length_393_cov_34.411765:1-393 changes to pilon.changes [pilon] Writing updated NODE_8503_length_393_cov_34.411765_pilon to pilon.fasta [pilon] Writing NODE_8504_length_393_cov_33.150735:1-393 changes to pilon.changes [pilon] Writing updated NODE_8504_length_393_cov_33.150735_pilon to pilon.fasta [pilon] Writing NODE_8505_length_393_cov_31.889706:1-393 changes to pilon.changes [pilon] Writing updated NODE_8505_length_393_cov_31.889706_pilon to pilon.fasta [pilon] Writing NODE_8506_length_393_cov_27.775735:1-393 changes to pilon.changes [pilon] Writing updated NODE_8506_length_393_cov_27.775735_pilon to pilon.fasta [pilon] Writing NODE_8507_length_393_cov_26.316176:1-393 changes to pilon.changes [pilon] Writing updated NODE_8507_length_393_cov_26.316176_pilon to pilon.fasta [pilon] Writing NODE_8508_length_393_cov_24.272059:1-393 changes to pilon.changes [pilon] Writing updated NODE_8508_length_393_cov_24.272059_pilon to pilon.fasta [pilon] Writing NODE_8509_length_393_cov_22.908088:1-393 changes to pilon.changes [pilon] Writing updated NODE_8509_length_393_cov_22.908088_pilon to pilon.fasta [pilon] Writing NODE_8510_length_393_cov_22.136029:1-393 changes to pilon.changes [pilon] Writing updated NODE_8510_length_393_cov_22.136029_pilon to pilon.fasta [pilon] Writing NODE_8511_length_393_cov_21.033088:1-393 changes to pilon.changes [pilon] Writing updated NODE_8511_length_393_cov_21.033088_pilon to pilon.fasta [pilon] Writing NODE_8512_length_393_cov_18.886029:1-393 changes to pilon.changes [pilon] Writing updated NODE_8512_length_393_cov_18.886029_pilon to pilon.fasta [pilon] Writing NODE_8513_length_393_cov_17.672794:1-393 changes to pilon.changes [pilon] Writing updated NODE_8513_length_393_cov_17.672794_pilon to pilon.fasta [pilon] Writing NODE_8514_length_393_cov_17.511029:1-393 changes to pilon.changes [pilon] Writing updated NODE_8514_length_393_cov_17.511029_pilon to pilon.fasta [pilon] Writing NODE_8515_length_393_cov_16.819853:1-393 changes to pilon.changes [pilon] Writing updated NODE_8515_length_393_cov_16.819853_pilon to pilon.fasta [pilon] Writing NODE_8516_length_393_cov_14.518382:1-393 changes to pilon.changes [pilon] Writing updated NODE_8516_length_393_cov_14.518382_pilon to pilon.fasta [pilon] Writing NODE_8517_length_393_cov_13.455882:1-393 changes to pilon.changes [pilon] Writing updated NODE_8517_length_393_cov_13.455882_pilon to pilon.fasta [pilon] Writing NODE_8518_length_393_cov_13.161765:1-393 changes to pilon.changes [pilon] Writing updated NODE_8518_length_393_cov_13.161765_pilon to pilon.fasta [pilon] Writing NODE_8519_length_393_cov_13.147059:1-393 changes to pilon.changes [pilon] Writing updated NODE_8519_length_393_cov_13.147059_pilon to pilon.fasta [pilon] Writing NODE_8520_length_393_cov_12.591912:1-393 changes to pilon.changes [pilon] Writing updated NODE_8520_length_393_cov_12.591912_pilon to pilon.fasta [pilon] Writing NODE_8521_length_393_cov_12.544118:1-393 changes to pilon.changes [pilon] Writing updated NODE_8521_length_393_cov_12.544118_pilon to pilon.fasta [pilon] Writing NODE_8522_length_393_cov_12.066176:1-393 changes to pilon.changes [pilon] Writing updated NODE_8522_length_393_cov_12.066176_pilon to pilon.fasta [pilon] Writing NODE_8523_length_393_cov_8.588235:1-393 changes to pilon.changes [pilon] Writing updated NODE_8523_length_393_cov_8.588235_pilon to pilon.fasta [pilon] Writing NODE_8524_length_393_cov_7.783088:1-393 changes to pilon.changes [pilon] Writing updated NODE_8524_length_393_cov_7.783088_pilon to pilon.fasta [pilon] Writing NODE_8525_length_393_cov_6.724265:1-393 changes to pilon.changes [pilon] Writing updated NODE_8525_length_393_cov_6.724265_pilon to pilon.fasta [pilon] Writing NODE_8526_length_392_cov_60.833948:1-392 changes to pilon.changes [pilon] Writing updated NODE_8526_length_392_cov_60.833948_pilon to pilon.fasta [pilon] Writing NODE_8527_length_392_cov_51.040590:1-392 changes to pilon.changes [pilon] Writing updated NODE_8527_length_392_cov_51.040590_pilon to pilon.fasta [pilon] Writing NODE_8528_length_392_cov_45.158672:1-392 changes to pilon.changes [pilon] Writing updated NODE_8528_length_392_cov_45.158672_pilon to pilon.fasta [pilon] Writing NODE_8529_length_392_cov_41.974170:1-392 changes to pilon.changes [pilon] Writing updated NODE_8529_length_392_cov_41.974170_pilon to pilon.fasta [pilon] Writing NODE_8530_length_392_cov_35.509225:1-392 changes to pilon.changes [pilon] Writing updated NODE_8530_length_392_cov_35.509225_pilon to pilon.fasta [pilon] Writing NODE_8531_length_392_cov_32.033210:1-392 changes to pilon.changes [pilon] Writing updated NODE_8531_length_392_cov_32.033210_pilon to pilon.fasta [pilon] Writing NODE_8532_length_392_cov_30.837638:1-392 changes to pilon.changes [pilon] Writing updated NODE_8532_length_392_cov_30.837638_pilon to pilon.fasta [pilon] Writing NODE_8533_length_392_cov_29.586716:1-392 changes to pilon.changes [pilon] Writing updated NODE_8533_length_392_cov_29.586716_pilon to pilon.fasta [pilon] Writing NODE_8534_length_392_cov_26.911439:1-392 changes to pilon.changes [pilon] Writing updated NODE_8534_length_392_cov_26.911439_pilon to pilon.fasta [pilon] Writing NODE_8535_length_392_cov_26.188192:1-392 changes to pilon.changes [pilon] Writing updated NODE_8535_length_392_cov_26.188192_pilon to pilon.fasta [pilon] Writing NODE_8536_length_392_cov_22.490775:1-392 changes to pilon.changes [pilon] Writing updated NODE_8536_length_392_cov_22.490775_pilon to pilon.fasta [pilon] Writing NODE_8537_length_392_cov_21.479705:1-392 changes to pilon.changes [pilon] Writing updated NODE_8537_length_392_cov_21.479705_pilon to pilon.fasta [pilon] Writing NODE_8538_length_392_cov_20.616236:1-392 changes to pilon.changes [pilon] Writing updated NODE_8538_length_392_cov_20.616236_pilon to pilon.fasta [pilon] Writing NODE_8539_length_392_cov_14.804428:1-392 changes to pilon.changes [pilon] Writing updated NODE_8539_length_392_cov_14.804428_pilon to pilon.fasta [pilon] Writing NODE_8540_length_392_cov_13.147601:1-392 changes to pilon.changes [pilon] Writing updated NODE_8540_length_392_cov_13.147601_pilon to pilon.fasta [pilon] Writing NODE_8541_length_392_cov_11.918819:1-392 changes to pilon.changes [pilon] Writing updated NODE_8541_length_392_cov_11.918819_pilon to pilon.fasta [pilon] Writing NODE_8542_length_392_cov_8.959410:1-392 changes to pilon.changes [pilon] Writing updated NODE_8542_length_392_cov_8.959410_pilon to pilon.fasta [pilon] Writing NODE_8543_length_391_cov_53.540741:1-391 changes to pilon.changes [pilon] Writing updated NODE_8543_length_391_cov_53.540741_pilon to pilon.fasta [pilon] Writing NODE_8544_length_391_cov_46.529630:1-391 changes to pilon.changes [pilon] Writing updated NODE_8544_length_391_cov_46.529630_pilon to pilon.fasta [pilon] Writing NODE_8545_length_391_cov_37.566667:1-391 changes to pilon.changes [pilon] Writing updated NODE_8545_length_391_cov_37.566667_pilon to pilon.fasta [pilon] Writing NODE_8546_length_391_cov_32.411111:1-391 changes to pilon.changes [pilon] Writing updated NODE_8546_length_391_cov_32.411111_pilon to pilon.fasta [pilon] Writing NODE_8547_length_391_cov_25.062963:1-391 changes to pilon.changes [pilon] Writing updated NODE_8547_length_391_cov_25.062963_pilon to pilon.fasta [pilon] Writing NODE_8548_length_391_cov_23.037037:1-391 changes to pilon.changes [pilon] Writing updated NODE_8548_length_391_cov_23.037037_pilon to pilon.fasta [pilon] Writing NODE_8549_length_391_cov_21.988889:1-391 changes to pilon.changes [pilon] Writing updated NODE_8549_length_391_cov_21.988889_pilon to pilon.fasta [pilon] Writing NODE_8550_length_391_cov_21.100000:1-391 changes to pilon.changes [pilon] Writing updated NODE_8550_length_391_cov_21.100000_pilon to pilon.fasta [pilon] Writing NODE_8551_length_391_cov_20.314815:1-391 changes to pilon.changes [pilon] Writing updated NODE_8551_length_391_cov_20.314815_pilon to pilon.fasta [pilon] Writing NODE_8552_length_391_cov_16.900000:1-391 changes to pilon.changes [pilon] Writing updated NODE_8552_length_391_cov_16.900000_pilon to pilon.fasta [pilon] Writing NODE_8553_length_391_cov_12.422222:1-391 changes to pilon.changes [pilon] Writing updated NODE_8553_length_391_cov_12.422222_pilon to pilon.fasta [pilon] Writing NODE_8554_length_390_cov_39.483271:1-390 changes to pilon.changes [pilon] Writing updated NODE_8554_length_390_cov_39.483271_pilon to pilon.fasta [pilon] Writing NODE_8555_length_390_cov_24.215613:1-390 changes to pilon.changes [pilon] Writing updated NODE_8555_length_390_cov_24.215613_pilon to pilon.fasta [pilon] Writing NODE_8556_length_390_cov_23.327138:1-390 changes to pilon.changes [pilon] Writing updated NODE_8556_length_390_cov_23.327138_pilon to pilon.fasta [pilon] Writing NODE_8557_length_390_cov_22.394052:1-390 changes to pilon.changes [pilon] Writing updated NODE_8557_length_390_cov_22.394052_pilon to pilon.fasta [pilon] Writing NODE_8558_length_390_cov_22.230483:1-390 changes to pilon.changes [pilon] Writing updated NODE_8558_length_390_cov_22.230483_pilon to pilon.fasta [pilon] Writing NODE_8559_length_390_cov_22.182156:1-390 changes to pilon.changes [pilon] Writing updated NODE_8559_length_390_cov_22.182156_pilon to pilon.fasta [pilon] Writing NODE_8560_length_390_cov_21.230483:1-390 changes to pilon.changes [pilon] Writing updated NODE_8560_length_390_cov_21.230483_pilon to pilon.fasta [pilon] Writing NODE_8561_length_390_cov_20.007435:1-390 changes to pilon.changes [pilon] Writing updated NODE_8561_length_390_cov_20.007435_pilon to pilon.fasta [pilon] Writing NODE_8562_length_390_cov_18.669145:1-390 changes to pilon.changes [pilon] Writing updated NODE_8562_length_390_cov_18.669145_pilon to pilon.fasta [pilon] Writing NODE_8563_length_390_cov_14.799257:1-390 changes to pilon.changes [pilon] Writing updated NODE_8563_length_390_cov_14.799257_pilon to pilon.fasta [pilon] Writing NODE_8564_length_390_cov_14.085502:1-390 changes to pilon.changes [pilon] Writing updated NODE_8564_length_390_cov_14.085502_pilon to pilon.fasta [pilon] Writing NODE_8565_length_390_cov_13.851301:1-390 changes to pilon.changes [pilon] Writing updated NODE_8565_length_390_cov_13.851301_pilon to pilon.fasta [pilon] Writing NODE_8566_length_390_cov_12.724907:1-390 changes to pilon.changes [pilon] Writing updated NODE_8566_length_390_cov_12.724907_pilon to pilon.fasta [pilon] Writing NODE_8567_length_390_cov_12.472119:1-390 changes to pilon.changes [pilon] Writing updated NODE_8567_length_390_cov_12.472119_pilon to pilon.fasta [pilon] Writing NODE_8568_length_390_cov_12.315985:1-390 changes to pilon.changes [pilon] Writing updated NODE_8568_length_390_cov_12.315985_pilon to pilon.fasta [pilon] Writing NODE_8569_length_390_cov_11.728625:1-390 changes to pilon.changes [pilon] Writing updated NODE_8569_length_390_cov_11.728625_pilon to pilon.fasta [pilon] Writing NODE_8570_length_390_cov_11.672862:1-390 changes to pilon.changes [pilon] Writing updated NODE_8570_length_390_cov_11.672862_pilon to pilon.fasta [pilon] Writing NODE_8571_length_390_cov_11.260223:1-390 changes to pilon.changes [pilon] Writing updated NODE_8571_length_390_cov_11.260223_pilon to pilon.fasta [pilon] Writing NODE_8572_length_390_cov_10.802974:1-390 changes to pilon.changes [pilon] Writing updated NODE_8572_length_390_cov_10.802974_pilon to pilon.fasta [pilon] Writing NODE_8573_length_390_cov_10.691450:1-390 changes to pilon.changes [pilon] Writing updated NODE_8573_length_390_cov_10.691450_pilon to pilon.fasta [pilon] Writing NODE_8574_length_390_cov_10.011152:1-390 changes to pilon.changes [pilon] Writing updated NODE_8574_length_390_cov_10.011152_pilon to pilon.fasta [pilon] Writing NODE_8575_length_390_cov_9.379182:1-390 changes to pilon.changes [pilon] Writing updated NODE_8575_length_390_cov_9.379182_pilon to pilon.fasta [pilon] Writing NODE_8576_length_390_cov_8.784387:1-390 changes to pilon.changes [pilon] Writing updated NODE_8576_length_390_cov_8.784387_pilon to pilon.fasta [pilon] Writing NODE_8577_length_389_cov_55.343284:1-389 changes to pilon.changes [pilon] Writing updated NODE_8577_length_389_cov_55.343284_pilon to pilon.fasta [pilon] Writing NODE_8578_length_389_cov_51.514925:1-389 changes to pilon.changes [pilon] Writing updated NODE_8578_length_389_cov_51.514925_pilon to pilon.fasta [pilon] Writing NODE_8579_length_389_cov_38.985075:1-389 changes to pilon.changes [pilon] Writing updated NODE_8579_length_389_cov_38.985075_pilon to pilon.fasta [pilon] Writing NODE_8580_length_389_cov_37.738806:1-389 changes to pilon.changes [pilon] Writing updated NODE_8580_length_389_cov_37.738806_pilon to pilon.fasta [pilon] Writing NODE_8581_length_389_cov_33.802239:1-389 changes to pilon.changes [pilon] Writing updated NODE_8581_length_389_cov_33.802239_pilon to pilon.fasta [pilon] Writing NODE_8582_length_389_cov_32.197761:1-389 changes to pilon.changes [pilon] Writing updated NODE_8582_length_389_cov_32.197761_pilon to pilon.fasta [pilon] Writing NODE_8583_length_389_cov_30.768657:1-389 changes to pilon.changes [pilon] Writing updated NODE_8583_length_389_cov_30.768657_pilon to pilon.fasta [pilon] Writing NODE_8584_length_389_cov_25.347015:1-389 changes to pilon.changes [pilon] Writing updated NODE_8584_length_389_cov_25.347015_pilon to pilon.fasta [pilon] Writing NODE_8585_length_389_cov_23.652985:1-389 changes to pilon.changes [pilon] Writing updated NODE_8585_length_389_cov_23.652985_pilon to pilon.fasta [pilon] Writing NODE_8586_length_389_cov_16.167910:1-389 changes to pilon.changes [pilon] Writing updated NODE_8586_length_389_cov_16.167910_pilon to pilon.fasta [pilon] Writing NODE_8587_length_389_cov_15.981343:1-389 changes to pilon.changes [pilon] Writing updated NODE_8587_length_389_cov_15.981343_pilon to pilon.fasta [pilon] Writing NODE_8588_length_389_cov_15.511194:1-389 changes to pilon.changes [pilon] Writing updated NODE_8588_length_389_cov_15.511194_pilon to pilon.fasta [pilon] Writing NODE_8589_length_389_cov_15.320896:1-389 changes to pilon.changes [pilon] Writing updated NODE_8589_length_389_cov_15.320896_pilon to pilon.fasta [pilon] Writing NODE_8590_length_389_cov_15.126866:1-389 changes to pilon.changes [pilon] Writing updated NODE_8590_length_389_cov_15.126866_pilon to pilon.fasta [pilon] Writing NODE_8591_length_389_cov_13.287313:1-389 changes to pilon.changes [pilon] Writing updated NODE_8591_length_389_cov_13.287313_pilon to pilon.fasta [pilon] Writing NODE_8592_length_389_cov_12.776119:1-389 changes to pilon.changes [pilon] Writing updated NODE_8592_length_389_cov_12.776119_pilon to pilon.fasta [pilon] Writing NODE_8593_length_389_cov_12.365672:1-389 changes to pilon.changes [pilon] Writing updated NODE_8593_length_389_cov_12.365672_pilon to pilon.fasta [pilon] Writing NODE_8594_length_389_cov_10.757463:1-389 changes to pilon.changes [pilon] Writing updated NODE_8594_length_389_cov_10.757463_pilon to pilon.fasta [pilon] Writing NODE_8595_length_389_cov_8.608209:1-389 changes to pilon.changes [pilon] Writing updated NODE_8595_length_389_cov_8.608209_pilon to pilon.fasta [pilon] Writing NODE_8596_length_389_cov_3.701493:1-389 changes to pilon.changes [pilon] Writing updated NODE_8596_length_389_cov_3.701493_pilon to pilon.fasta [pilon] Writing NODE_8597_length_388_cov_29.352060:1-388 changes to pilon.changes [pilon] Writing updated NODE_8597_length_388_cov_29.352060_pilon to pilon.fasta [pilon] Writing NODE_8598_length_388_cov_24.632959:1-388 changes to pilon.changes [pilon] Writing updated NODE_8598_length_388_cov_24.632959_pilon to pilon.fasta [pilon] Writing NODE_8599_length_388_cov_23.936330:1-388 changes to pilon.changes [pilon] Writing updated NODE_8599_length_388_cov_23.936330_pilon to pilon.fasta [pilon] Writing NODE_8600_length_388_cov_18.943820:1-388 changes to pilon.changes [pilon] Writing updated NODE_8600_length_388_cov_18.943820_pilon to pilon.fasta [pilon] Writing NODE_8601_length_388_cov_17.550562:1-388 changes to pilon.changes [pilon] Writing updated NODE_8601_length_388_cov_17.550562_pilon to pilon.fasta [pilon] Writing NODE_8602_length_388_cov_16.692884:1-388 changes to pilon.changes [pilon] Writing updated NODE_8602_length_388_cov_16.692884_pilon to pilon.fasta [pilon] Writing NODE_8603_length_388_cov_14.138577:1-388 changes to pilon.changes [pilon] Writing updated NODE_8603_length_388_cov_14.138577_pilon to pilon.fasta [pilon] Writing NODE_8604_length_388_cov_11.883895:1-388 changes to pilon.changes [pilon] Writing updated NODE_8604_length_388_cov_11.883895_pilon to pilon.fasta [pilon] Writing NODE_8605_length_388_cov_8.344569:1-388 changes to pilon.changes [pilon] Writing updated NODE_8605_length_388_cov_8.344569_pilon to pilon.fasta [pilon] Writing NODE_8606_length_387_cov_33.691729:1-387 changes to pilon.changes [pilon] Writing updated NODE_8606_length_387_cov_33.691729_pilon to pilon.fasta [pilon] Writing NODE_8607_length_387_cov_30.097744:1-387 changes to pilon.changes [pilon] Writing updated NODE_8607_length_387_cov_30.097744_pilon to pilon.fasta [pilon] Writing NODE_8608_length_387_cov_30.037594:1-387 changes to pilon.changes [pilon] Writing updated NODE_8608_length_387_cov_30.037594_pilon to pilon.fasta [pilon] Writing NODE_8609_length_387_cov_29.830827:1-387 changes to pilon.changes [pilon] Writing updated NODE_8609_length_387_cov_29.830827_pilon to pilon.fasta [pilon] Writing NODE_8610_length_387_cov_29.687970:1-387 changes to pilon.changes [pilon] Writing updated NODE_8610_length_387_cov_29.687970_pilon to pilon.fasta [pilon] Writing NODE_8611_length_387_cov_28.823308:1-387 changes to pilon.changes [pilon] Writing updated NODE_8611_length_387_cov_28.823308_pilon to pilon.fasta [pilon] Writing NODE_8612_length_387_cov_26.511278:1-387 changes to pilon.changes [pilon] Writing updated NODE_8612_length_387_cov_26.511278_pilon to pilon.fasta [pilon] Writing NODE_8613_length_387_cov_25.778195:1-387 changes to pilon.changes [pilon] Writing updated NODE_8613_length_387_cov_25.778195_pilon to pilon.fasta [pilon] Writing NODE_8614_length_387_cov_23.718045:1-387 changes to pilon.changes [pilon] Writing updated NODE_8614_length_387_cov_23.718045_pilon to pilon.fasta [pilon] Writing NODE_8615_length_387_cov_22.815789:1-387 changes to pilon.changes [pilon] Writing updated NODE_8615_length_387_cov_22.815789_pilon to pilon.fasta [pilon] Writing NODE_8616_length_387_cov_22.770677:1-387 changes to pilon.changes [pilon] Writing updated NODE_8616_length_387_cov_22.770677_pilon to pilon.fasta [pilon] Writing NODE_8617_length_387_cov_22.526316:1-387 changes to pilon.changes [pilon] Writing updated NODE_8617_length_387_cov_22.526316_pilon to pilon.fasta [pilon] Writing NODE_8618_length_387_cov_22.203008:1-387 changes to pilon.changes [pilon] Writing updated NODE_8618_length_387_cov_22.203008_pilon to pilon.fasta [pilon] Writing NODE_8619_length_387_cov_21.770677:1-387 changes to pilon.changes [pilon] Writing updated NODE_8619_length_387_cov_21.770677_pilon to pilon.fasta [pilon] Writing NODE_8620_length_387_cov_21.770677:1-387 changes to pilon.changes [pilon] Writing updated NODE_8620_length_387_cov_21.770677_pilon to pilon.fasta [pilon] Writing NODE_8621_length_387_cov_20.868421:1-387 changes to pilon.changes [pilon] Writing updated NODE_8621_length_387_cov_20.868421_pilon to pilon.fasta [pilon] Writing NODE_8622_length_387_cov_18.278195:1-387 changes to pilon.changes [pilon] Writing updated NODE_8622_length_387_cov_18.278195_pilon to pilon.fasta [pilon] Writing NODE_8623_length_387_cov_17.274436:1-387 changes to pilon.changes [pilon] Writing updated NODE_8623_length_387_cov_17.274436_pilon to pilon.fasta [pilon] Writing NODE_8624_length_387_cov_16.251880:1-387 changes to pilon.changes [pilon] Writing updated NODE_8624_length_387_cov_16.251880_pilon to pilon.fasta [pilon] Writing NODE_8625_length_387_cov_16.191729:1-387 changes to pilon.changes [pilon] Writing updated NODE_8625_length_387_cov_16.191729_pilon to pilon.fasta [pilon] Writing NODE_8626_length_387_cov_16.191729:1-387 changes to pilon.changes [pilon] Writing updated NODE_8626_length_387_cov_16.191729_pilon to pilon.fasta [pilon] Writing NODE_8627_length_387_cov_15.812030:1-387 changes to pilon.changes [pilon] Writing updated NODE_8627_length_387_cov_15.812030_pilon to pilon.fasta [pilon] Writing NODE_8628_length_387_cov_14.203008:1-387 changes to pilon.changes [pilon] Writing updated NODE_8628_length_387_cov_14.203008_pilon to pilon.fasta [pilon] Writing NODE_8629_length_387_cov_13.312030:1-387 changes to pilon.changes [pilon] Writing updated NODE_8629_length_387_cov_13.312030_pilon to pilon.fasta [pilon] Writing NODE_8630_length_387_cov_11.473684:1-387 changes to pilon.changes [pilon] Writing updated NODE_8630_length_387_cov_11.473684_pilon to pilon.fasta [pilon] Writing NODE_8631_length_387_cov_6.736842:1-387 changes to pilon.changes [pilon] Writing updated NODE_8631_length_387_cov_6.736842_pilon to pilon.fasta [pilon] Writing NODE_8632_length_386_cov_33.260377:1-386 changes to pilon.changes [pilon] Writing updated NODE_8632_length_386_cov_33.260377_pilon to pilon.fasta [pilon] Writing NODE_8633_length_386_cov_32.913208:1-386 changes to pilon.changes [pilon] Writing updated NODE_8633_length_386_cov_32.913208_pilon to pilon.fasta [pilon] Writing NODE_8634_length_386_cov_19.871698:1-386 changes to pilon.changes [pilon] Writing updated NODE_8634_length_386_cov_19.871698_pilon to pilon.fasta [pilon] Writing NODE_8635_length_386_cov_19.532075:1-386 changes to pilon.changes [pilon] Writing updated NODE_8635_length_386_cov_19.532075_pilon to pilon.fasta [pilon] Writing NODE_8636_length_386_cov_19.343396:1-386 changes to pilon.changes [pilon] Writing updated NODE_8636_length_386_cov_19.343396_pilon to pilon.fasta [pilon] Writing NODE_8637_length_386_cov_15.445283:1-386 changes to pilon.changes [pilon] Writing updated NODE_8637_length_386_cov_15.445283_pilon to pilon.fasta [pilon] Writing NODE_8638_length_386_cov_15.316981:1-386 changes to pilon.changes [pilon] Writing updated NODE_8638_length_386_cov_15.316981_pilon to pilon.fasta [pilon] Writing NODE_8639_length_386_cov_14.984906:1-386 changes to pilon.changes [pilon] Writing updated NODE_8639_length_386_cov_14.984906_pilon to pilon.fasta [pilon] Writing NODE_8640_length_386_cov_13.275472:1-386 changes to pilon.changes [pilon] Writing updated NODE_8640_length_386_cov_13.275472_pilon to pilon.fasta [pilon] Writing NODE_8641_length_386_cov_13.241509:1-386 changes to pilon.changes [pilon] Writing updated NODE_8641_length_386_cov_13.241509_pilon to pilon.fasta [pilon] Writing NODE_8642_length_386_cov_12.984906:1-386 changes to pilon.changes [pilon] Writing updated NODE_8642_length_386_cov_12.984906_pilon to pilon.fasta [pilon] Writing NODE_8643_length_386_cov_11.822642:1-386 changes to pilon.changes [pilon] Writing updated NODE_8643_length_386_cov_11.822642_pilon to pilon.fasta [pilon] Writing NODE_8644_length_385_cov_40.890152:1-385 changes to pilon.changes [pilon] Writing updated NODE_8644_length_385_cov_40.890152_pilon to pilon.fasta [pilon] Writing NODE_8645_length_385_cov_39.348485:1-385 changes to pilon.changes [pilon] Writing updated NODE_8645_length_385_cov_39.348485_pilon to pilon.fasta [pilon] Writing NODE_8646_length_385_cov_29.670455:1-385 changes to pilon.changes [pilon] Writing updated NODE_8646_length_385_cov_29.670455_pilon to pilon.fasta [pilon] Writing NODE_8647_length_385_cov_26.178030:1-385 changes to pilon.changes [pilon] Writing updated NODE_8647_length_385_cov_26.178030_pilon to pilon.fasta [pilon] Writing NODE_8648_length_385_cov_25.515152:1-385 changes to pilon.changes [pilon] Writing updated NODE_8648_length_385_cov_25.515152_pilon to pilon.fasta [pilon] Writing NODE_8649_length_385_cov_25.488636:1-385 changes to pilon.changes [pilon] Writing updated NODE_8649_length_385_cov_25.488636_pilon to pilon.fasta [pilon] Writing NODE_8650_length_385_cov_22.352273:1-385 changes to pilon.changes [pilon] Writing updated NODE_8650_length_385_cov_22.352273_pilon to pilon.fasta [pilon] Writing NODE_8651_length_385_cov_13.007576:1-385 changes to pilon.changes [pilon] Writing updated NODE_8651_length_385_cov_13.007576_pilon to pilon.fasta [pilon] Writing NODE_8652_length_385_cov_12.564394:1-385 changes to pilon.changes [pilon] Writing updated NODE_8652_length_385_cov_12.564394_pilon to pilon.fasta [pilon] Writing NODE_8653_length_384_cov_57.901141:1-384 changes to pilon.changes [pilon] Writing updated NODE_8653_length_384_cov_57.901141_pilon to pilon.fasta [pilon] Writing NODE_8654_length_384_cov_33.676806:1-384 changes to pilon.changes [pilon] Writing updated NODE_8654_length_384_cov_33.676806_pilon to pilon.fasta [pilon] Writing NODE_8655_length_384_cov_25.505703:1-384 changes to pilon.changes [pilon] Writing updated NODE_8655_length_384_cov_25.505703_pilon to pilon.fasta [pilon] Writing NODE_8656_length_384_cov_24.129278:1-384 changes to pilon.changes [pilon] Writing updated NODE_8656_length_384_cov_24.129278_pilon to pilon.fasta [pilon] Writing NODE_8657_length_384_cov_23.387833:1-384 changes to pilon.changes [pilon] Writing updated NODE_8657_length_384_cov_23.387833_pilon to pilon.fasta [pilon] Writing NODE_8658_length_384_cov_21.178707:1-384 changes to pilon.changes [pilon] Writing updated NODE_8658_length_384_cov_21.178707_pilon to pilon.fasta [pilon] Writing NODE_8659_length_384_cov_19.958175:1-384 changes to pilon.changes [pilon] Writing updated NODE_8659_length_384_cov_19.958175_pilon to pilon.fasta [pilon] Writing NODE_8660_length_384_cov_19.958175:1-384 changes to pilon.changes [pilon] Writing updated NODE_8660_length_384_cov_19.958175_pilon to pilon.fasta [pilon] Writing NODE_8661_length_384_cov_19.794677:1-384 changes to pilon.changes [pilon] Writing updated NODE_8661_length_384_cov_19.794677_pilon to pilon.fasta [pilon] Writing NODE_8662_length_384_cov_17.920152:1-384 changes to pilon.changes [pilon] Writing updated NODE_8662_length_384_cov_17.920152_pilon to pilon.fasta [pilon] Writing NODE_8663_length_384_cov_17.380228:1-384 changes to pilon.changes [pilon] Writing updated NODE_8663_length_384_cov_17.380228_pilon to pilon.fasta [pilon] Writing NODE_8664_length_384_cov_16.357414:1-384 changes to pilon.changes [pilon] Writing updated NODE_8664_length_384_cov_16.357414_pilon to pilon.fasta [pilon] Writing NODE_8665_length_384_cov_16.193916:1-384 changes to pilon.changes [pilon] Writing updated NODE_8665_length_384_cov_16.193916_pilon to pilon.fasta [pilon] Writing NODE_8666_length_384_cov_15.866920:1-384 changes to pilon.changes [pilon] Writing updated NODE_8666_length_384_cov_15.866920_pilon to pilon.fasta [pilon] Writing NODE_8667_length_384_cov_15.638783:1-384 changes to pilon.changes [pilon] Writing updated NODE_8667_length_384_cov_15.638783_pilon to pilon.fasta [pilon] Writing NODE_8668_length_384_cov_15.049430:1-384 changes to pilon.changes [pilon] Writing updated NODE_8668_length_384_cov_15.049430_pilon to pilon.fasta [pilon] Writing NODE_8669_length_384_cov_14.163498:1-384 changes to pilon.changes [pilon] Writing updated NODE_8669_length_384_cov_14.163498_pilon to pilon.fasta [pilon] Writing NODE_8670_length_384_cov_13.969582:1-384 changes to pilon.changes [pilon] Writing updated NODE_8670_length_384_cov_13.969582_pilon to pilon.fasta [pilon] Writing NODE_8671_length_384_cov_13.296578:1-384 changes to pilon.changes [pilon] Writing updated NODE_8671_length_384_cov_13.296578_pilon to pilon.fasta [pilon] Writing NODE_8672_length_384_cov_12.711027:1-384 changes to pilon.changes [pilon] Writing updated NODE_8672_length_384_cov_12.711027_pilon to pilon.fasta [pilon] Writing NODE_8673_length_384_cov_12.600760:1-384 changes to pilon.changes [pilon] Writing updated NODE_8673_length_384_cov_12.600760_pilon to pilon.fasta [pilon] Writing NODE_8674_length_384_cov_12.163498:1-384 changes to pilon.changes [pilon] Writing updated NODE_8674_length_384_cov_12.163498_pilon to pilon.fasta [pilon] Writing NODE_8675_length_384_cov_11.615970:1-384 changes to pilon.changes [pilon] Writing updated NODE_8675_length_384_cov_11.615970_pilon to pilon.fasta [pilon] Writing NODE_8676_length_384_cov_11.197719:1-384 changes to pilon.changes [pilon] Writing updated NODE_8676_length_384_cov_11.197719_pilon to pilon.fasta [pilon] Writing NODE_8677_length_384_cov_10.961977:1-384 changes to pilon.changes [pilon] Writing updated NODE_8677_length_384_cov_10.961977_pilon to pilon.fasta [pilon] Writing NODE_8678_length_384_cov_10.391635:1-384 changes to pilon.changes [pilon] Writing updated NODE_8678_length_384_cov_10.391635_pilon to pilon.fasta [pilon] Writing NODE_8679_length_384_cov_7.057034:1-384 changes to pilon.changes [pilon] Writing updated NODE_8679_length_384_cov_7.057034_pilon to pilon.fasta [pilon] Writing NODE_8680_length_383_cov_72.000000:1-383 changes to pilon.changes [pilon] Writing updated NODE_8680_length_383_cov_72.000000_pilon to pilon.fasta [pilon] Writing NODE_8681_length_383_cov_57.965649:1-383 changes to pilon.changes [pilon] Writing updated NODE_8681_length_383_cov_57.965649_pilon to pilon.fasta [pilon] Writing NODE_8682_length_383_cov_52.633588:1-383 changes to pilon.changes [pilon] Writing updated NODE_8682_length_383_cov_52.633588_pilon to pilon.fasta [pilon] Writing NODE_8683_length_383_cov_51.450382:1-383 changes to pilon.changes [pilon] Writing updated NODE_8683_length_383_cov_51.450382_pilon to pilon.fasta [pilon] Writing NODE_8684_length_383_cov_40.068702:1-383 changes to pilon.changes [pilon] Writing updated NODE_8684_length_383_cov_40.068702_pilon to pilon.fasta [pilon] Writing NODE_8685_length_383_cov_38.270992:1-383 changes to pilon.changes [pilon] Writing updated NODE_8685_length_383_cov_38.270992_pilon to pilon.fasta [pilon] Writing NODE_8686_length_383_cov_29.145038:1-383 changes to pilon.changes [pilon] Writing updated NODE_8686_length_383_cov_29.145038_pilon to pilon.fasta [pilon] Writing NODE_8687_length_383_cov_28.038168:1-383 changes to pilon.changes [pilon] Writing updated NODE_8687_length_383_cov_28.038168_pilon to pilon.fasta [pilon] Writing NODE_8688_length_383_cov_15.171756:1-383 changes to pilon.changes [pilon] Writing updated NODE_8688_length_383_cov_15.171756_pilon to pilon.fasta [pilon] Writing NODE_8689_length_383_cov_11.049618:1-383 changes to pilon.changes [pilon] Writing updated NODE_8689_length_383_cov_11.049618_pilon to pilon.fasta [pilon] Writing NODE_8690_length_383_cov_9.854962:1-383 changes to pilon.changes [pilon] Writing updated NODE_8690_length_383_cov_9.854962_pilon to pilon.fasta [pilon] Writing NODE_8691_length_383_cov_8.935115:1-383 changes to pilon.changes [pilon] Writing updated NODE_8691_length_383_cov_8.935115_pilon to pilon.fasta [pilon] Writing NODE_8692_length_382_cov_54.613027:1-382 changes to pilon.changes [pilon] Writing updated NODE_8692_length_382_cov_54.613027_pilon to pilon.fasta [pilon] Writing NODE_8693_length_382_cov_53.509579:1-382 changes to pilon.changes [pilon] Writing updated NODE_8693_length_382_cov_53.509579_pilon to pilon.fasta [pilon] Writing NODE_8694_length_382_cov_47.363985:1-382 changes to pilon.changes [pilon] Writing updated NODE_8694_length_382_cov_47.363985_pilon to pilon.fasta [pilon] Writing NODE_8695_length_382_cov_34.812261:1-382 changes to pilon.changes [pilon] Writing updated NODE_8695_length_382_cov_34.812261_pilon to pilon.fasta [pilon] Writing NODE_8696_length_382_cov_27.524904:1-382 changes to pilon.changes [pilon] Writing updated NODE_8696_length_382_cov_27.524904_pilon to pilon.fasta [pilon] Writing NODE_8697_length_382_cov_27.130268:1-382 changes to pilon.changes [pilon] Writing updated NODE_8697_length_382_cov_27.130268_pilon to pilon.fasta [pilon] Writing NODE_8698_length_382_cov_25.632184:1-382 changes to pilon.changes [pilon] Writing updated NODE_8698_length_382_cov_25.632184_pilon to pilon.fasta [pilon] Writing NODE_8699_length_382_cov_20.681992:1-382 changes to pilon.changes [pilon] Writing updated NODE_8699_length_382_cov_20.681992_pilon to pilon.fasta [pilon] Writing NODE_8700_length_382_cov_20.088123:1-382 changes to pilon.changes [pilon] Writing updated NODE_8700_length_382_cov_20.088123_pilon to pilon.fasta [pilon] Writing NODE_8701_length_382_cov_16.601533:1-382 changes to pilon.changes [pilon] Writing updated NODE_8701_length_382_cov_16.601533_pilon to pilon.fasta [pilon] Writing NODE_8702_length_382_cov_15.639847:1-382 changes to pilon.changes [pilon] Writing updated NODE_8702_length_382_cov_15.639847_pilon to pilon.fasta [pilon] Writing NODE_8703_length_382_cov_14.141762:1-382 changes to pilon.changes [pilon] Writing updated NODE_8703_length_382_cov_14.141762_pilon to pilon.fasta [pilon] Writing NODE_8704_length_382_cov_13.739464:1-382 changes to pilon.changes [pilon] Writing updated NODE_8704_length_382_cov_13.739464_pilon to pilon.fasta [pilon] Writing NODE_8705_length_382_cov_13.199234:1-382 changes to pilon.changes [pilon] Writing updated NODE_8705_length_382_cov_13.199234_pilon to pilon.fasta [pilon] Writing NODE_8706_length_382_cov_12.766284:1-382 changes to pilon.changes [pilon] Writing updated NODE_8706_length_382_cov_12.766284_pilon to pilon.fasta [pilon] Writing NODE_8707_length_382_cov_11.578544:1-382 changes to pilon.changes [pilon] Writing updated NODE_8707_length_382_cov_11.578544_pilon to pilon.fasta [pilon] Writing NODE_8708_length_382_cov_8.176245:1-382 changes to pilon.changes [pilon] Writing updated NODE_8708_length_382_cov_8.176245_pilon to pilon.fasta [pilon] Writing NODE_8709_length_381_cov_65.907692:1-381 changes to pilon.changes [pilon] Writing updated NODE_8709_length_381_cov_65.907692_pilon to pilon.fasta [pilon] Writing NODE_8710_length_381_cov_57.523077:1-381 changes to pilon.changes [pilon] Writing updated NODE_8710_length_381_cov_57.523077_pilon to pilon.fasta [pilon] Writing NODE_8711_length_381_cov_47.146154:1-381 changes to pilon.changes [pilon] Writing updated NODE_8711_length_381_cov_47.146154_pilon to pilon.fasta [pilon] Writing NODE_8712_length_381_cov_31.492308:1-381 changes to pilon.changes [pilon] Writing updated NODE_8712_length_381_cov_31.492308_pilon to pilon.fasta [pilon] Writing NODE_8713_length_381_cov_26.434615:1-381 changes to pilon.changes [pilon] Writing updated NODE_8713_length_381_cov_26.434615_pilon to pilon.fasta [pilon] Writing NODE_8714_length_381_cov_26.038462:1-381 changes to pilon.changes [pilon] Writing updated NODE_8714_length_381_cov_26.038462_pilon to pilon.fasta [pilon] Writing NODE_8715_length_381_cov_25.369231:1-381 changes to pilon.changes [pilon] Writing updated NODE_8715_length_381_cov_25.369231_pilon to pilon.fasta [pilon] Writing NODE_8716_length_381_cov_25.080769:1-381 changes to pilon.changes [pilon] Writing updated NODE_8716_length_381_cov_25.080769_pilon to pilon.fasta [pilon] Writing NODE_8717_length_381_cov_24.992308:1-381 changes to pilon.changes [pilon] Writing updated NODE_8717_length_381_cov_24.992308_pilon to pilon.fasta [pilon] Writing NODE_8718_length_381_cov_23.619231:1-381 changes to pilon.changes [pilon] Writing updated NODE_8718_length_381_cov_23.619231_pilon to pilon.fasta [pilon] Writing NODE_8719_length_381_cov_20.226923:1-381 changes to pilon.changes [pilon] Writing updated NODE_8719_length_381_cov_20.226923_pilon to pilon.fasta [pilon] Writing NODE_8720_length_381_cov_19.292308:1-381 changes to pilon.changes [pilon] Writing updated NODE_8720_length_381_cov_19.292308_pilon to pilon.fasta [pilon] Writing NODE_8721_length_381_cov_16.961538:1-381 changes to pilon.changes [pilon] Writing updated NODE_8721_length_381_cov_16.961538_pilon to pilon.fasta [pilon] Writing NODE_8722_length_381_cov_16.457692:1-381 changes to pilon.changes [pilon] Writing updated NODE_8722_length_381_cov_16.457692_pilon to pilon.fasta [pilon] Writing NODE_8723_length_381_cov_16.057692:1-381 changes to pilon.changes [pilon] Writing updated NODE_8723_length_381_cov_16.057692_pilon to pilon.fasta [pilon] Writing NODE_8724_length_381_cov_15.784615:1-381 changes to pilon.changes [pilon] Writing updated NODE_8724_length_381_cov_15.784615_pilon to pilon.fasta [pilon] Writing NODE_8725_length_381_cov_14.911538:1-381 changes to pilon.changes [pilon] Writing updated NODE_8725_length_381_cov_14.911538_pilon to pilon.fasta [pilon] Writing NODE_8726_length_381_cov_14.523077:1-381 changes to pilon.changes [pilon] Writing updated NODE_8726_length_381_cov_14.523077_pilon to pilon.fasta [pilon] Writing NODE_8727_length_381_cov_13.011538:1-381 changes to pilon.changes [pilon] Writing updated NODE_8727_length_381_cov_13.011538_pilon to pilon.fasta [pilon] Writing NODE_8728_length_381_cov_12.780769:1-381 changes to pilon.changes [pilon] Writing updated NODE_8728_length_381_cov_12.780769_pilon to pilon.fasta [pilon] Writing NODE_8729_length_381_cov_12.542308:1-381 changes to pilon.changes [pilon] Writing updated NODE_8729_length_381_cov_12.542308_pilon to pilon.fasta [pilon] Writing NODE_8730_length_381_cov_11.696154:1-381 changes to pilon.changes [pilon] Writing updated NODE_8730_length_381_cov_11.696154_pilon to pilon.fasta [pilon] Writing NODE_8731_length_381_cov_11.342308:1-381 changes to pilon.changes [pilon] Writing updated NODE_8731_length_381_cov_11.342308_pilon to pilon.fasta [pilon] Writing NODE_8732_length_381_cov_11.292308:1-381 changes to pilon.changes [pilon] Writing updated NODE_8732_length_381_cov_11.292308_pilon to pilon.fasta [pilon] Writing NODE_8733_length_381_cov_11.261538:1-381 changes to pilon.changes [pilon] Writing updated NODE_8733_length_381_cov_11.261538_pilon to pilon.fasta [pilon] Writing NODE_8734_length_381_cov_9.907692:1-381 changes to pilon.changes [pilon] Writing updated NODE_8734_length_381_cov_9.907692_pilon to pilon.fasta [pilon] Writing NODE_8735_length_381_cov_8.407692:1-381 changes to pilon.changes [pilon] Writing updated NODE_8735_length_381_cov_8.407692_pilon to pilon.fasta [pilon] Writing NODE_8736_length_381_cov_7.607692:1-381 changes to pilon.changes [pilon] Writing updated NODE_8736_length_381_cov_7.607692_pilon to pilon.fasta [pilon] Writing NODE_8737_length_381_cov_5.946154:1-381 changes to pilon.changes [pilon] Writing updated NODE_8737_length_381_cov_5.946154_pilon to pilon.fasta [pilon] Writing NODE_8738_length_380_cov_66.305019:1-380 changes to pilon.changes [pilon] Writing updated NODE_8738_length_380_cov_66.305019_pilon to pilon.fasta [pilon] Writing NODE_8739_length_380_cov_58.810811:1-380 changes to pilon.changes [pilon] Writing updated NODE_8739_length_380_cov_58.810811_pilon to pilon.fasta [pilon] Writing NODE_8740_length_380_cov_51.173745:1-380 changes to pilon.changes [pilon] Writing updated NODE_8740_length_380_cov_51.173745_pilon to pilon.fasta [pilon] Writing NODE_8741_length_380_cov_39.579151:1-380 changes to pilon.changes [pilon] Writing updated NODE_8741_length_380_cov_39.579151_pilon to pilon.fasta [pilon] Writing NODE_8742_length_380_cov_37.725869:1-380 changes to pilon.changes [pilon] Writing updated NODE_8742_length_380_cov_37.725869_pilon to pilon.fasta [pilon] Writing NODE_8743_length_380_cov_36.509653:1-380 changes to pilon.changes [pilon] Writing updated NODE_8743_length_380_cov_36.509653_pilon to pilon.fasta [pilon] Writing NODE_8744_length_380_cov_33.293436:1-380 changes to pilon.changes [pilon] Writing updated NODE_8744_length_380_cov_33.293436_pilon to pilon.fasta [pilon] Writing NODE_8745_length_380_cov_33.154440:1-380 changes to pilon.changes [pilon] Writing updated NODE_8745_length_380_cov_33.154440_pilon to pilon.fasta [pilon] Writing NODE_8746_length_380_cov_27.347490:1-380 changes to pilon.changes [pilon] Writing updated NODE_8746_length_380_cov_27.347490_pilon to pilon.fasta [pilon] Writing NODE_8747_length_380_cov_22.992278:1-380 changes to pilon.changes [pilon] Writing updated NODE_8747_length_380_cov_22.992278_pilon to pilon.fasta [pilon] Writing NODE_8748_length_380_cov_22.698842:1-380 changes to pilon.changes [pilon] Writing updated NODE_8748_length_380_cov_22.698842_pilon to pilon.fasta [pilon] Writing NODE_8749_length_380_cov_20.594595:1-380 changes to pilon.changes [pilon] Writing updated NODE_8749_length_380_cov_20.594595_pilon to pilon.fasta [pilon] Writing NODE_8750_length_380_cov_18.841699:1-380 changes to pilon.changes [pilon] Writing updated NODE_8750_length_380_cov_18.841699_pilon to pilon.fasta [pilon] Writing NODE_8751_length_380_cov_15.988417:1-380 changes to pilon.changes [pilon] Writing updated NODE_8751_length_380_cov_15.988417_pilon to pilon.fasta [pilon] Writing NODE_8752_length_380_cov_12.818533:1-380 changes to pilon.changes [pilon] Writing updated NODE_8752_length_380_cov_12.818533_pilon to pilon.fasta [pilon] Writing NODE_8753_length_380_cov_12.015444:1-380 changes to pilon.changes [pilon] Writing updated NODE_8753_length_380_cov_12.015444_pilon to pilon.fasta [pilon] Writing NODE_8754_length_380_cov_9.903475:1-380 changes to pilon.changes [pilon] Writing updated NODE_8754_length_380_cov_9.903475_pilon to pilon.fasta [pilon] Writing NODE_8755_length_380_cov_9.888031:1-380 changes to pilon.changes [pilon] Writing updated NODE_8755_length_380_cov_9.888031_pilon to pilon.fasta [pilon] Writing NODE_8756_length_380_cov_9.791506:1-380 changes to pilon.changes [pilon] Writing updated NODE_8756_length_380_cov_9.791506_pilon to pilon.fasta [pilon] Writing NODE_8757_length_380_cov_9.262548:1-380 changes to pilon.changes [pilon] Writing updated NODE_8757_length_380_cov_9.262548_pilon to pilon.fasta [pilon] Writing NODE_8758_length_380_cov_8.081081:1-380 changes to pilon.changes [pilon] Writing updated NODE_8758_length_380_cov_8.081081_pilon to pilon.fasta [pilon] Writing NODE_8759_length_379_cov_45.282946:1-379 changes to pilon.changes [pilon] Writing updated NODE_8759_length_379_cov_45.282946_pilon to pilon.fasta [pilon] Writing NODE_8760_length_379_cov_38.519380:1-379 changes to pilon.changes [pilon] Writing updated NODE_8760_length_379_cov_38.519380_pilon to pilon.fasta [pilon] Writing NODE_8761_length_379_cov_13.368217:1-379 changes to pilon.changes [pilon] Writing updated NODE_8761_length_379_cov_13.368217_pilon to pilon.fasta [pilon] Writing NODE_8762_length_379_cov_13.147287:1-379 changes to pilon.changes [pilon] Writing updated NODE_8762_length_379_cov_13.147287_pilon to pilon.fasta [pilon] Writing NODE_8763_length_379_cov_12.717054:1-379 changes to pilon.changes [pilon] Writing updated NODE_8763_length_379_cov_12.717054_pilon to pilon.fasta [pilon] Writing NODE_8764_length_379_cov_12.565891:1-379 changes to pilon.changes [pilon] Writing updated NODE_8764_length_379_cov_12.565891_pilon to pilon.fasta [pilon] Writing NODE_8765_length_379_cov_10.011628:1-379 changes to pilon.changes [pilon] Writing updated NODE_8765_length_379_cov_10.011628_pilon to pilon.fasta [pilon] Writing NODE_8766_length_379_cov_4.879845:1-379 changes to pilon.changes [pilon] Writing updated NODE_8766_length_379_cov_4.879845_pilon to pilon.fasta [pilon] Writing NODE_8767_length_378_cov_40.622568:1-378 changes to pilon.changes [pilon] Writing updated NODE_8767_length_378_cov_40.622568_pilon to pilon.fasta [pilon] Writing NODE_8768_length_378_cov_32.665370:1-378 changes to pilon.changes [pilon] Writing updated NODE_8768_length_378_cov_32.665370_pilon to pilon.fasta [pilon] Writing NODE_8769_length_378_cov_31.568093:1-378 changes to pilon.changes [pilon] Writing updated NODE_8769_length_378_cov_31.568093_pilon to pilon.fasta [pilon] Writing NODE_8770_length_378_cov_29.544747:1-378 changes to pilon.changes [pilon] Writing updated NODE_8770_length_378_cov_29.544747_pilon to pilon.fasta [pilon] Writing NODE_8771_length_378_cov_29.140078:1-378 changes to pilon.changes [pilon] Writing updated NODE_8771_length_378_cov_29.140078_pilon to pilon.fasta [pilon] Writing NODE_8772_length_378_cov_24.813230:1-378 changes to pilon.changes [pilon] Writing updated NODE_8772_length_378_cov_24.813230_pilon to pilon.fasta [pilon] Writing NODE_8773_length_378_cov_23.712062:1-378 changes to pilon.changes [pilon] Writing updated NODE_8773_length_378_cov_23.712062_pilon to pilon.fasta [pilon] Writing NODE_8774_length_378_cov_21.299611:1-378 changes to pilon.changes [pilon] Writing updated NODE_8774_length_378_cov_21.299611_pilon to pilon.fasta [pilon] Writing NODE_8775_length_378_cov_20.571984:1-378 changes to pilon.changes [pilon] Writing updated NODE_8775_length_378_cov_20.571984_pilon to pilon.fasta [pilon] Writing NODE_8776_length_378_cov_20.027237:1-378 changes to pilon.changes [pilon] Writing updated NODE_8776_length_378_cov_20.027237_pilon to pilon.fasta [pilon] Writing NODE_8777_length_378_cov_19.649805:1-378 changes to pilon.changes [pilon] Writing updated NODE_8777_length_378_cov_19.649805_pilon to pilon.fasta [pilon] Writing NODE_8778_length_378_cov_18.766537:1-378 changes to pilon.changes [pilon] Writing updated NODE_8778_length_378_cov_18.766537_pilon to pilon.fasta [pilon] Writing NODE_8779_length_378_cov_17.618677:1-378 changes to pilon.changes [pilon] Writing updated NODE_8779_length_378_cov_17.618677_pilon to pilon.fasta [pilon] Writing NODE_8780_length_378_cov_17.264591:1-378 changes to pilon.changes [pilon] Writing updated NODE_8780_length_378_cov_17.264591_pilon to pilon.fasta [pilon] Writing NODE_8781_length_378_cov_16.844358:1-378 changes to pilon.changes [pilon] Writing updated NODE_8781_length_378_cov_16.844358_pilon to pilon.fasta [pilon] Writing NODE_8782_length_378_cov_16.591440:1-378 changes to pilon.changes [pilon] Writing updated NODE_8782_length_378_cov_16.591440_pilon to pilon.fasta [pilon] Writing NODE_8783_length_378_cov_16.175097:1-378 changes to pilon.changes [pilon] Writing updated NODE_8783_length_378_cov_16.175097_pilon to pilon.fasta [pilon] Writing NODE_8784_length_378_cov_15.828794:1-378 changes to pilon.changes [pilon] Writing updated NODE_8784_length_378_cov_15.828794_pilon to pilon.fasta [pilon] Writing NODE_8785_length_378_cov_15.673152:1-378 changes to pilon.changes [pilon] Writing updated NODE_8785_length_378_cov_15.673152_pilon to pilon.fasta [pilon] Writing NODE_8786_length_378_cov_14.408560:1-378 changes to pilon.changes [pilon] Writing updated NODE_8786_length_378_cov_14.408560_pilon to pilon.fasta [pilon] Writing NODE_8787_length_378_cov_14.338521:1-378 changes to pilon.changes [pilon] Writing updated NODE_8787_length_378_cov_14.338521_pilon to pilon.fasta [pilon] Writing NODE_8788_length_378_cov_13.424125:1-378 changes to pilon.changes [pilon] Writing updated NODE_8788_length_378_cov_13.424125_pilon to pilon.fasta [pilon] Writing NODE_8789_length_378_cov_11.957198:1-378 changes to pilon.changes [pilon] Writing updated NODE_8789_length_378_cov_11.957198_pilon to pilon.fasta [pilon] Writing NODE_8790_length_378_cov_11.622568:1-378 changes to pilon.changes [pilon] Writing updated NODE_8790_length_378_cov_11.622568_pilon to pilon.fasta [pilon] Writing NODE_8791_length_378_cov_8.233463:1-378 changes to pilon.changes [pilon] Writing updated NODE_8791_length_378_cov_8.233463_pilon to pilon.fasta [pilon] Writing NODE_8792_length_378_cov_8.190661:1-378 changes to pilon.changes [pilon] Writing updated NODE_8792_length_378_cov_8.190661_pilon to pilon.fasta [pilon] Writing NODE_8793_length_378_cov_6.789883:1-378 changes to pilon.changes [pilon] Writing updated NODE_8793_length_378_cov_6.789883_pilon to pilon.fasta [pilon] Writing NODE_8794_length_378_cov_6.396887:1-378 changes to pilon.changes [pilon] Writing updated NODE_8794_length_378_cov_6.396887_pilon to pilon.fasta [pilon] Writing NODE_8795_length_377_cov_59.445312:1-377 changes to pilon.changes [pilon] Writing updated NODE_8795_length_377_cov_59.445312_pilon to pilon.fasta [pilon] Writing NODE_8796_length_377_cov_57.964844:1-377 changes to pilon.changes [pilon] Writing updated NODE_8796_length_377_cov_57.964844_pilon to pilon.fasta [pilon] Writing NODE_8797_length_377_cov_50.667969:1-377 changes to pilon.changes [pilon] Writing updated NODE_8797_length_377_cov_50.667969_pilon to pilon.fasta [pilon] Writing NODE_8798_length_377_cov_46.503906:1-377 changes to pilon.changes [pilon] Writing updated NODE_8798_length_377_cov_46.503906_pilon to pilon.fasta [pilon] Writing NODE_8799_length_377_cov_33.898438:1-377 changes to pilon.changes [pilon] Writing updated NODE_8799_length_377_cov_33.898438_pilon to pilon.fasta [pilon] Writing NODE_8800_length_377_cov_31.910156:1-377 changes to pilon.changes [pilon] Writing updated NODE_8800_length_377_cov_31.910156_pilon to pilon.fasta [pilon] Writing NODE_8801_length_377_cov_26.175781:1-377 changes to pilon.changes [pilon] Writing updated NODE_8801_length_377_cov_26.175781_pilon to pilon.fasta [pilon] Writing NODE_8802_length_377_cov_16.437500:1-377 changes to pilon.changes [pilon] Writing updated NODE_8802_length_377_cov_16.437500_pilon to pilon.fasta [pilon] Writing NODE_8803_length_377_cov_16.066406:1-377 changes to pilon.changes [pilon] Writing updated NODE_8803_length_377_cov_16.066406_pilon to pilon.fasta [pilon] Writing NODE_8804_length_377_cov_15.097656:1-377 changes to pilon.changes [pilon] Writing updated NODE_8804_length_377_cov_15.097656_pilon to pilon.fasta [pilon] Writing NODE_8805_length_377_cov_12.437500:1-377 changes to pilon.changes [pilon] Writing updated NODE_8805_length_377_cov_12.437500_pilon to pilon.fasta [pilon] Writing NODE_8806_length_377_cov_11.109375:1-377 changes to pilon.changes [pilon] Writing updated NODE_8806_length_377_cov_11.109375_pilon to pilon.fasta [pilon] Writing NODE_8807_length_377_cov_10.175781:1-377 changes to pilon.changes [pilon] Writing updated NODE_8807_length_377_cov_10.175781_pilon to pilon.fasta [pilon] Writing NODE_8808_length_377_cov_9.933594:1-377 changes to pilon.changes [pilon] Writing updated NODE_8808_length_377_cov_9.933594_pilon to pilon.fasta [pilon] Writing NODE_8809_length_377_cov_4.125000:1-377 changes to pilon.changes [pilon] Writing updated NODE_8809_length_377_cov_4.125000_pilon to pilon.fasta [pilon] Writing NODE_8810_length_376_cov_48.160784:1-376 changes to pilon.changes [pilon] Writing updated NODE_8810_length_376_cov_48.160784_pilon to pilon.fasta [pilon] Writing NODE_8811_length_376_cov_33.839216:1-376 changes to pilon.changes [pilon] Writing updated NODE_8811_length_376_cov_33.839216_pilon to pilon.fasta [pilon] Writing NODE_8812_length_376_cov_25.611765:1-376 changes to pilon.changes [pilon] Writing updated NODE_8812_length_376_cov_25.611765_pilon to pilon.fasta [pilon] Writing NODE_8813_length_376_cov_24.996078:1-376 changes to pilon.changes [pilon] Writing updated NODE_8813_length_376_cov_24.996078_pilon to pilon.fasta [pilon] Writing NODE_8814_length_376_cov_24.556863:1-376 changes to pilon.changes [pilon] Writing updated NODE_8814_length_376_cov_24.556863_pilon to pilon.fasta [pilon] Writing NODE_8815_length_376_cov_20.160784:1-376 changes to pilon.changes [pilon] Writing updated NODE_8815_length_376_cov_20.160784_pilon to pilon.fasta [pilon] Writing NODE_8816_length_376_cov_15.470588:1-376 changes to pilon.changes [pilon] Writing updated NODE_8816_length_376_cov_15.470588_pilon to pilon.fasta [pilon] Writing NODE_8817_length_375_cov_66.877953:1-375 changes to pilon.changes [pilon] Writing updated NODE_8817_length_375_cov_66.877953_pilon to pilon.fasta [pilon] Writing NODE_8818_length_375_cov_62.724409:1-375 changes to pilon.changes [pilon] Writing updated NODE_8818_length_375_cov_62.724409_pilon to pilon.fasta [pilon] Writing NODE_8819_length_375_cov_53.877953:1-375 changes to pilon.changes [pilon] Writing updated NODE_8819_length_375_cov_53.877953_pilon to pilon.fasta [pilon] Writing NODE_8820_length_375_cov_51.925197:1-375 changes to pilon.changes [pilon] Writing updated NODE_8820_length_375_cov_51.925197_pilon to pilon.fasta [pilon] Writing NODE_8821_length_375_cov_37.118110:1-375 changes to pilon.changes [pilon] Writing updated NODE_8821_length_375_cov_37.118110_pilon to pilon.fasta [pilon] Writing NODE_8822_length_375_cov_32.846457:1-375 changes to pilon.changes [pilon] Writing updated NODE_8822_length_375_cov_32.846457_pilon to pilon.fasta [pilon] Writing NODE_8823_length_375_cov_31.661417:1-375 changes to pilon.changes [pilon] Writing updated NODE_8823_length_375_cov_31.661417_pilon to pilon.fasta [pilon] Writing NODE_8824_length_375_cov_27.929134:1-375 changes to pilon.changes [pilon] Writing updated NODE_8824_length_375_cov_27.929134_pilon to pilon.fasta [pilon] Writing NODE_8825_length_375_cov_27.885827:1-375 changes to pilon.changes [pilon] Writing updated NODE_8825_length_375_cov_27.885827_pilon to pilon.fasta [pilon] Writing NODE_8826_length_375_cov_26.818898:1-375 changes to pilon.changes [pilon] Writing updated NODE_8826_length_375_cov_26.818898_pilon to pilon.fasta [pilon] Writing NODE_8827_length_375_cov_26.000000:1-375 changes to pilon.changes [pilon] Writing updated NODE_8827_length_375_cov_26.000000_pilon to pilon.fasta [pilon] Writing NODE_8828_length_375_cov_25.523622:1-375 changes to pilon.changes [pilon] Writing updated NODE_8828_length_375_cov_25.523622_pilon to pilon.fasta [pilon] Writing NODE_8829_length_375_cov_25.102362:1-375 changes to pilon.changes [pilon] Writing updated NODE_8829_length_375_cov_25.102362_pilon to pilon.fasta [pilon] Writing NODE_8830_length_375_cov_24.074803:1-375 changes to pilon.changes [pilon] Writing updated NODE_8830_length_375_cov_24.074803_pilon to pilon.fasta [pilon] Writing NODE_8831_length_375_cov_21.559055:1-375 changes to pilon.changes [pilon] Writing updated NODE_8831_length_375_cov_21.559055_pilon to pilon.fasta [pilon] Writing NODE_8832_length_375_cov_19.476378:1-375 changes to pilon.changes [pilon] Writing updated NODE_8832_length_375_cov_19.476378_pilon to pilon.fasta [pilon] Writing NODE_8833_length_375_cov_18.551181:1-375 changes to pilon.changes [pilon] Writing updated NODE_8833_length_375_cov_18.551181_pilon to pilon.fasta [pilon] Writing NODE_8834_length_375_cov_18.295276:1-375 changes to pilon.changes [pilon] Writing updated NODE_8834_length_375_cov_18.295276_pilon to pilon.fasta [pilon] Writing NODE_8835_length_375_cov_18.102362:1-375 changes to pilon.changes [pilon] Writing updated NODE_8835_length_375_cov_18.102362_pilon to pilon.fasta [pilon] Writing NODE_8836_length_375_cov_17.527559:1-375 changes to pilon.changes [pilon] Writing updated NODE_8836_length_375_cov_17.527559_pilon to pilon.fasta [pilon] Writing NODE_8837_length_375_cov_17.102362:1-375 changes to pilon.changes [pilon] Writing updated NODE_8837_length_375_cov_17.102362_pilon to pilon.fasta [pilon] Writing NODE_8838_length_375_cov_16.098425:1-375 changes to pilon.changes [pilon] Writing updated NODE_8838_length_375_cov_16.098425_pilon to pilon.fasta [pilon] Writing NODE_8839_length_375_cov_15.192913:1-375 changes to pilon.changes [pilon] Writing updated NODE_8839_length_375_cov_15.192913_pilon to pilon.fasta [pilon] Writing NODE_8840_length_375_cov_14.716535:1-375 changes to pilon.changes [pilon] Writing updated NODE_8840_length_375_cov_14.716535_pilon to pilon.fasta [pilon] Writing NODE_8841_length_375_cov_14.641732:1-375 changes to pilon.changes [pilon] Writing updated NODE_8841_length_375_cov_14.641732_pilon to pilon.fasta [pilon] Writing NODE_8842_length_375_cov_13.055118:1-375 changes to pilon.changes [pilon] Writing updated NODE_8842_length_375_cov_13.055118_pilon to pilon.fasta [pilon] Writing NODE_8843_length_375_cov_12.177165:1-375 changes to pilon.changes [pilon] Writing updated NODE_8843_length_375_cov_12.177165_pilon to pilon.fasta [pilon] Writing NODE_8844_length_375_cov_11.303150:1-375 changes to pilon.changes [pilon] Writing updated NODE_8844_length_375_cov_11.303150_pilon to pilon.fasta [pilon] Writing NODE_8845_length_375_cov_8.566929:1-375 changes to pilon.changes [pilon] Writing updated NODE_8845_length_375_cov_8.566929_pilon to pilon.fasta [pilon] Writing NODE_8846_length_375_cov_5.425197:1-375 changes to pilon.changes [pilon] Writing updated NODE_8846_length_375_cov_5.425197_pilon to pilon.fasta [pilon] Writing NODE_8847_length_374_cov_88.924901:1-374 changes to pilon.changes [pilon] Writing updated NODE_8847_length_374_cov_88.924901_pilon to pilon.fasta [pilon] Writing NODE_8848_length_374_cov_63.106719:1-374 changes to pilon.changes [pilon] Writing updated NODE_8848_length_374_cov_63.106719_pilon to pilon.fasta [pilon] Writing NODE_8849_length_374_cov_56.687747:1-374 changes to pilon.changes [pilon] Writing updated NODE_8849_length_374_cov_56.687747_pilon to pilon.fasta [pilon] Writing NODE_8850_length_374_cov_46.529644:1-374 changes to pilon.changes [pilon] Writing updated NODE_8850_length_374_cov_46.529644_pilon to pilon.fasta [pilon] Writing NODE_8851_length_374_cov_36.130435:1-374 changes to pilon.changes [pilon] Writing updated NODE_8851_length_374_cov_36.130435_pilon to pilon.fasta [pilon] Writing NODE_8852_length_374_cov_26.252964:1-374 changes to pilon.changes [pilon] Writing updated NODE_8852_length_374_cov_26.252964_pilon to pilon.fasta [pilon] Writing NODE_8853_length_374_cov_25.577075:1-374 changes to pilon.changes [pilon] Writing updated NODE_8853_length_374_cov_25.577075_pilon to pilon.fasta [pilon] Writing NODE_8854_length_374_cov_24.351779:1-374 changes to pilon.changes [pilon] Writing updated NODE_8854_length_374_cov_24.351779_pilon to pilon.fasta [pilon] Writing NODE_8855_length_374_cov_24.241107:1-374 changes to pilon.changes [pilon] Writing updated NODE_8855_length_374_cov_24.241107_pilon to pilon.fasta [pilon] Writing NODE_8856_length_374_cov_23.300395:1-374 changes to pilon.changes [pilon] Writing updated NODE_8856_length_374_cov_23.300395_pilon to pilon.fasta [pilon] Writing NODE_8857_length_374_cov_23.154150:1-374 changes to pilon.changes [pilon] Writing updated NODE_8857_length_374_cov_23.154150_pilon to pilon.fasta [pilon] Writing NODE_8858_length_374_cov_20.770751:1-374 changes to pilon.changes [pilon] Writing updated NODE_8858_length_374_cov_20.770751_pilon to pilon.fasta [pilon] Writing NODE_8859_length_374_cov_17.861660:1-374 changes to pilon.changes [pilon] Writing updated NODE_8859_length_374_cov_17.861660_pilon to pilon.fasta [pilon] Writing NODE_8860_length_374_cov_16.197628:1-374 changes to pilon.changes [pilon] Writing updated NODE_8860_length_374_cov_16.197628_pilon to pilon.fasta [pilon] Writing NODE_8861_length_374_cov_11.090909:1-374 changes to pilon.changes [pilon] Writing updated NODE_8861_length_374_cov_11.090909_pilon to pilon.fasta [pilon] Writing NODE_8862_length_374_cov_8.616601:1-374 changes to pilon.changes [pilon] Writing updated NODE_8862_length_374_cov_8.616601_pilon to pilon.fasta [pilon] Writing NODE_8863_length_374_cov_8.146245:1-374 changes to pilon.changes [pilon] Writing updated NODE_8863_length_374_cov_8.146245_pilon to pilon.fasta [pilon] Writing NODE_8864_length_374_cov_7.501976:1-374 changes to pilon.changes [pilon] Writing updated NODE_8864_length_374_cov_7.501976_pilon to pilon.fasta [pilon] Writing NODE_8865_length_374_cov_7.335968:1-374 changes to pilon.changes [pilon] Writing updated NODE_8865_length_374_cov_7.335968_pilon to pilon.fasta [pilon] Writing NODE_8866_length_374_cov_4.110672:1-374 changes to pilon.changes [pilon] Writing updated NODE_8866_length_374_cov_4.110672_pilon to pilon.fasta [pilon] Writing NODE_8867_length_373_cov_53.400794:1-373 changes to pilon.changes [pilon] Writing updated NODE_8867_length_373_cov_53.400794_pilon to pilon.fasta [pilon] Writing NODE_8868_length_373_cov_49.710317:1-373 changes to pilon.changes [pilon] Writing updated NODE_8868_length_373_cov_49.710317_pilon to pilon.fasta [pilon] Writing NODE_8869_length_373_cov_41.047619:1-373 changes to pilon.changes [pilon] Writing updated NODE_8869_length_373_cov_41.047619_pilon to pilon.fasta [pilon] Writing NODE_8870_length_373_cov_39.654762:1-373 changes to pilon.changes [pilon] Writing updated NODE_8870_length_373_cov_39.654762_pilon to pilon.fasta [pilon] Writing NODE_8871_length_373_cov_31.500000:1-373 changes to pilon.changes [pilon] Writing updated NODE_8871_length_373_cov_31.500000_pilon to pilon.fasta [pilon] Writing NODE_8872_length_373_cov_27.218254:1-373 changes to pilon.changes [pilon] Writing updated NODE_8872_length_373_cov_27.218254_pilon to pilon.fasta [pilon] Writing NODE_8873_length_373_cov_21.051587:1-373 changes to pilon.changes [pilon] Writing updated NODE_8873_length_373_cov_21.051587_pilon to pilon.fasta [pilon] Writing NODE_8874_length_373_cov_16.003968:1-373 changes to pilon.changes [pilon] Writing updated NODE_8874_length_373_cov_16.003968_pilon to pilon.fasta [pilon] Writing NODE_8875_length_373_cov_14.015873:1-373 changes to pilon.changes [pilon] Writing updated NODE_8875_length_373_cov_14.015873_pilon to pilon.fasta [pilon] Writing NODE_8876_length_373_cov_12.376984:1-373 changes to pilon.changes [pilon] Writing updated NODE_8876_length_373_cov_12.376984_pilon to pilon.fasta [pilon] Writing NODE_8877_length_373_cov_12.035714:1-373 changes to pilon.changes [pilon] Writing updated NODE_8877_length_373_cov_12.035714_pilon to pilon.fasta [pilon] Writing NODE_8878_length_373_cov_7.007937:1-373 changes to pilon.changes [pilon] Writing updated NODE_8878_length_373_cov_7.007937_pilon to pilon.fasta [pilon] Writing NODE_8879_length_373_cov_6.607143:1-373 changes to pilon.changes [pilon] Writing updated NODE_8879_length_373_cov_6.607143_pilon to pilon.fasta [pilon] Writing NODE_8880_length_372_cov_39.035857:1-372 changes to pilon.changes [pilon] Writing updated NODE_8880_length_372_cov_39.035857_pilon to pilon.fasta [pilon] Writing NODE_8881_length_372_cov_35.482072:1-372 changes to pilon.changes [pilon] Writing updated NODE_8881_length_372_cov_35.482072_pilon to pilon.fasta [pilon] Writing NODE_8882_length_372_cov_34.880478:1-372 changes to pilon.changes [pilon] Writing updated NODE_8882_length_372_cov_34.880478_pilon to pilon.fasta [pilon] Writing NODE_8883_length_372_cov_33.127490:1-372 changes to pilon.changes [pilon] Writing updated NODE_8883_length_372_cov_33.127490_pilon to pilon.fasta [pilon] Writing NODE_8884_length_372_cov_31.390438:1-372 changes to pilon.changes [pilon] Writing updated NODE_8884_length_372_cov_31.390438_pilon to pilon.fasta [pilon] Writing NODE_8885_length_372_cov_31.099602:1-372 changes to pilon.changes [pilon] Writing updated NODE_8885_length_372_cov_31.099602_pilon to pilon.fasta [pilon] Writing NODE_8886_length_372_cov_29.055777:1-372 changes to pilon.changes [pilon] Writing updated NODE_8886_length_372_cov_29.055777_pilon to pilon.fasta [pilon] Writing NODE_8887_length_372_cov_26.984064:1-372 changes to pilon.changes [pilon] Writing updated NODE_8887_length_372_cov_26.984064_pilon to pilon.fasta [pilon] Writing NODE_8888_length_372_cov_24.509960:1-372 changes to pilon.changes [pilon] Writing updated NODE_8888_length_372_cov_24.509960_pilon to pilon.fasta [pilon] Writing NODE_8889_length_372_cov_24.011952:1-372 changes to pilon.changes [pilon] Writing updated NODE_8889_length_372_cov_24.011952_pilon to pilon.fasta [pilon] Writing NODE_8890_length_372_cov_22.470120:1-372 changes to pilon.changes [pilon] Writing updated NODE_8890_length_372_cov_22.470120_pilon to pilon.fasta [pilon] Writing NODE_8891_length_372_cov_19.796813:1-372 changes to pilon.changes [pilon] Writing updated NODE_8891_length_372_cov_19.796813_pilon to pilon.fasta [pilon] Writing NODE_8892_length_372_cov_19.752988:1-372 changes to pilon.changes [pilon] Writing updated NODE_8892_length_372_cov_19.752988_pilon to pilon.fasta [pilon] Writing NODE_8893_length_372_cov_19.438247:1-372 changes to pilon.changes [pilon] Writing updated NODE_8893_length_372_cov_19.438247_pilon to pilon.fasta [pilon] Writing NODE_8894_length_372_cov_19.270916:1-372 changes to pilon.changes [pilon] Writing updated NODE_8894_length_372_cov_19.270916_pilon to pilon.fasta [pilon] Writing NODE_8895_length_372_cov_18.717131:1-372 changes to pilon.changes [pilon] Writing updated NODE_8895_length_372_cov_18.717131_pilon to pilon.fasta [pilon] Writing NODE_8896_length_372_cov_18.043825:1-372 changes to pilon.changes [pilon] Writing updated NODE_8896_length_372_cov_18.043825_pilon to pilon.fasta [pilon] Writing NODE_8897_length_372_cov_16.685259:1-372 changes to pilon.changes [pilon] Writing updated NODE_8897_length_372_cov_16.685259_pilon to pilon.fasta [pilon] Writing NODE_8898_length_372_cov_15.820717:1-372 changes to pilon.changes [pilon] Writing updated NODE_8898_length_372_cov_15.820717_pilon to pilon.fasta [pilon] Writing NODE_8899_length_372_cov_14.294821:1-372 changes to pilon.changes [pilon] Writing updated NODE_8899_length_372_cov_14.294821_pilon to pilon.fasta [pilon] Writing NODE_8900_length_372_cov_13.860558:1-372 changes to pilon.changes [pilon] Writing updated NODE_8900_length_372_cov_13.860558_pilon to pilon.fasta [pilon] Writing NODE_8901_length_372_cov_9.976096:1-372 changes to pilon.changes [pilon] Writing updated NODE_8901_length_372_cov_9.976096_pilon to pilon.fasta [pilon] Writing NODE_8902_length_372_cov_9.940239:1-372 changes to pilon.changes [pilon] Writing updated NODE_8902_length_372_cov_9.940239_pilon to pilon.fasta [pilon] Writing NODE_8903_length_372_cov_9.167331:1-372 changes to pilon.changes [pilon] Writing updated NODE_8903_length_372_cov_9.167331_pilon to pilon.fasta [pilon] Writing NODE_8904_length_371_cov_70.980000:1-371 changes to pilon.changes [pilon] Writing updated NODE_8904_length_371_cov_70.980000_pilon to pilon.fasta [pilon] Writing NODE_8905_length_371_cov_56.540000:1-371 changes to pilon.changes [pilon] Writing updated NODE_8905_length_371_cov_56.540000_pilon to pilon.fasta [pilon] Writing NODE_8906_length_371_cov_40.612000:1-371 changes to pilon.changes [pilon] Writing updated NODE_8906_length_371_cov_40.612000_pilon to pilon.fasta [pilon] Writing NODE_8907_length_371_cov_33.600000:1-371 changes to pilon.changes [pilon] Writing updated NODE_8907_length_371_cov_33.600000_pilon to pilon.fasta [pilon] Writing NODE_8908_length_371_cov_25.752000:1-371 changes to pilon.changes [pilon] Writing updated NODE_8908_length_371_cov_25.752000_pilon to pilon.fasta [pilon] Writing NODE_8909_length_371_cov_17.260000:1-371 changes to pilon.changes [pilon] Writing updated NODE_8909_length_371_cov_17.260000_pilon to pilon.fasta [pilon] Writing NODE_8910_length_371_cov_15.208000:1-371 changes to pilon.changes [pilon] Writing updated NODE_8910_length_371_cov_15.208000_pilon to pilon.fasta [pilon] Writing NODE_8911_length_371_cov_9.612000:1-371 changes to pilon.changes [pilon] Writing updated NODE_8911_length_371_cov_9.612000_pilon to pilon.fasta [pilon] Writing NODE_8912_length_371_cov_9.048000:1-371 changes to pilon.changes [pilon] Writing updated NODE_8912_length_371_cov_9.048000_pilon to pilon.fasta [pilon] Writing NODE_8913_length_371_cov_8.256000:1-371 changes to pilon.changes [pilon] Writing updated NODE_8913_length_371_cov_8.256000_pilon to pilon.fasta [pilon] Writing NODE_8914_length_370_cov_56.871486:1-370 changes to pilon.changes [pilon] Writing updated NODE_8914_length_370_cov_56.871486_pilon to pilon.fasta [pilon] Writing NODE_8915_length_370_cov_43.767068:1-370 changes to pilon.changes [pilon] Writing updated NODE_8915_length_370_cov_43.767068_pilon to pilon.fasta [pilon] Writing NODE_8916_length_370_cov_34.682731:1-370 changes to pilon.changes [pilon] Writing updated NODE_8916_length_370_cov_34.682731_pilon to pilon.fasta [pilon] Writing NODE_8917_length_370_cov_17.915663:1-370 changes to pilon.changes [pilon] Writing updated NODE_8917_length_370_cov_17.915663_pilon to pilon.fasta [pilon] Writing NODE_8918_length_370_cov_15.827309:1-370 changes to pilon.changes [pilon] Writing updated NODE_8918_length_370_cov_15.827309_pilon to pilon.fasta [pilon] Writing NODE_8919_length_370_cov_12.485944:1-370 changes to pilon.changes [pilon] Writing updated NODE_8919_length_370_cov_12.485944_pilon to pilon.fasta [pilon] Writing NODE_8920_length_370_cov_12.313253:1-370 changes to pilon.changes [pilon] Writing updated NODE_8920_length_370_cov_12.313253_pilon to pilon.fasta [pilon] Writing NODE_8921_length_370_cov_11.811245:1-370 changes to pilon.changes [pilon] Writing updated NODE_8921_length_370_cov_11.811245_pilon to pilon.fasta [pilon] Writing NODE_8922_length_370_cov_8.839357:1-370 changes to pilon.changes [pilon] Writing updated NODE_8922_length_370_cov_8.839357_pilon to pilon.fasta [pilon] Writing NODE_8923_length_369_cov_52.020161:1-369 changes to pilon.changes [pilon] Writing updated NODE_8923_length_369_cov_52.020161_pilon to pilon.fasta [pilon] Writing NODE_8924_length_369_cov_37.108871:1-369 changes to pilon.changes [pilon] Writing updated NODE_8924_length_369_cov_37.108871_pilon to pilon.fasta [pilon] Writing NODE_8925_length_369_cov_35.951613:1-369 changes to pilon.changes [pilon] Writing updated NODE_8925_length_369_cov_35.951613_pilon to pilon.fasta [pilon] Writing NODE_8926_length_369_cov_31.895161:1-369 changes to pilon.changes [pilon] Writing updated NODE_8926_length_369_cov_31.895161_pilon to pilon.fasta [pilon] Writing NODE_8927_length_369_cov_31.048387:1-369 changes to pilon.changes [pilon] Writing updated NODE_8927_length_369_cov_31.048387_pilon to pilon.fasta [pilon] Writing NODE_8928_length_369_cov_30.536290:1-369 changes to pilon.changes [pilon] Writing updated NODE_8928_length_369_cov_30.536290_pilon to pilon.fasta [pilon] Writing NODE_8929_length_369_cov_28.362903:1-369 changes to pilon.changes [pilon] Writing updated NODE_8929_length_369_cov_28.362903_pilon to pilon.fasta [pilon] Writing NODE_8930_length_369_cov_25.725806:1-369 changes to pilon.changes [pilon] Writing updated NODE_8930_length_369_cov_25.725806_pilon to pilon.fasta [pilon] Writing NODE_8931_length_369_cov_25.395161:1-369 changes to pilon.changes [pilon] Writing updated NODE_8931_length_369_cov_25.395161_pilon to pilon.fasta [pilon] Writing NODE_8932_length_369_cov_23.471774:1-369 changes to pilon.changes [pilon] Writing updated NODE_8932_length_369_cov_23.471774_pilon to pilon.fasta [pilon] Writing NODE_8933_length_369_cov_22.798387:1-369 changes to pilon.changes [pilon] Writing updated NODE_8933_length_369_cov_22.798387_pilon to pilon.fasta [pilon] Writing NODE_8934_length_369_cov_22.088710:1-369 changes to pilon.changes [pilon] Writing updated NODE_8934_length_369_cov_22.088710_pilon to pilon.fasta [pilon] Writing NODE_8935_length_369_cov_20.100806:1-369 changes to pilon.changes [pilon] Writing updated NODE_8935_length_369_cov_20.100806_pilon to pilon.fasta [pilon] Writing NODE_8936_length_369_cov_19.838710:1-369 changes to pilon.changes [pilon] Writing updated NODE_8936_length_369_cov_19.838710_pilon to pilon.fasta [pilon] Writing NODE_8937_length_369_cov_19.370968:1-369 changes to pilon.changes [pilon] Writing updated NODE_8937_length_369_cov_19.370968_pilon to pilon.fasta [pilon] Writing NODE_8938_length_369_cov_18.657258:1-369 changes to pilon.changes [pilon] Writing updated NODE_8938_length_369_cov_18.657258_pilon to pilon.fasta [pilon] Writing NODE_8939_length_369_cov_18.596774:1-369 changes to pilon.changes [pilon] Writing updated NODE_8939_length_369_cov_18.596774_pilon to pilon.fasta [pilon] Writing NODE_8940_length_369_cov_18.362903:1-369 changes to pilon.changes [pilon] Writing updated NODE_8940_length_369_cov_18.362903_pilon to pilon.fasta [pilon] Writing NODE_8941_length_369_cov_17.455645:1-369 changes to pilon.changes [pilon] Writing updated NODE_8941_length_369_cov_17.455645_pilon to pilon.fasta [pilon] Writing NODE_8942_length_369_cov_14.830645:1-369 changes to pilon.changes [pilon] Writing updated NODE_8942_length_369_cov_14.830645_pilon to pilon.fasta [pilon] Writing NODE_8943_length_369_cov_14.657258:1-369 changes to pilon.changes [pilon] Writing updated NODE_8943_length_369_cov_14.657258_pilon to pilon.fasta [pilon] Writing NODE_8944_length_369_cov_13.963710:1-369 changes to pilon.changes [pilon] Writing updated NODE_8944_length_369_cov_13.963710_pilon to pilon.fasta [pilon] Writing NODE_8945_length_369_cov_13.919355:1-369 changes to pilon.changes [pilon] Writing updated NODE_8945_length_369_cov_13.919355_pilon to pilon.fasta [pilon] Writing NODE_8946_length_369_cov_12.693548:1-369 changes to pilon.changes [pilon] Writing updated NODE_8946_length_369_cov_12.693548_pilon to pilon.fasta [pilon] Writing NODE_8947_length_369_cov_12.616935:1-369 changes to pilon.changes [pilon] Writing updated NODE_8947_length_369_cov_12.616935_pilon to pilon.fasta [pilon] Writing NODE_8948_length_369_cov_12.588710:1-369 changes to pilon.changes [pilon] Writing updated NODE_8948_length_369_cov_12.588710_pilon to pilon.fasta [pilon] Writing NODE_8949_length_369_cov_12.213710:1-369 changes to pilon.changes [pilon] Writing updated NODE_8949_length_369_cov_12.213710_pilon to pilon.fasta [pilon] Writing NODE_8950_length_369_cov_11.282258:1-369 changes to pilon.changes [pilon] Writing updated NODE_8950_length_369_cov_11.282258_pilon to pilon.fasta [pilon] Writing NODE_8951_length_369_cov_9.810484:1-369 changes to pilon.changes [pilon] Writing updated NODE_8951_length_369_cov_9.810484_pilon to pilon.fasta [pilon] Writing NODE_8952_length_369_cov_9.689516:1-369 changes to pilon.changes [pilon] Writing updated NODE_8952_length_369_cov_9.689516_pilon to pilon.fasta [pilon] Writing NODE_8953_length_369_cov_9.629032:1-369 changes to pilon.changes [pilon] Writing updated NODE_8953_length_369_cov_9.629032_pilon to pilon.fasta [pilon] Writing NODE_8954_length_369_cov_7.233871:1-369 changes to pilon.changes [pilon] Writing updated NODE_8954_length_369_cov_7.233871_pilon to pilon.fasta [pilon] Writing NODE_8955_length_369_cov_7.016129:1-369 changes to pilon.changes [pilon] Writing updated NODE_8955_length_369_cov_7.016129_pilon to pilon.fasta [pilon] Writing NODE_8956_length_369_cov_6.798387:1-369 changes to pilon.changes [pilon] Writing updated NODE_8956_length_369_cov_6.798387_pilon to pilon.fasta [pilon] Writing NODE_8957_length_369_cov_4.983871:1-369 changes to pilon.changes [pilon] Writing updated NODE_8957_length_369_cov_4.983871_pilon to pilon.fasta [pilon] Writing NODE_8958_length_368_cov_66.611336:1-368 changes to pilon.changes [pilon] Writing updated NODE_8958_length_368_cov_66.611336_pilon to pilon.fasta [pilon] Writing NODE_8959_length_368_cov_50.991903:1-368 changes to pilon.changes [pilon] Writing updated NODE_8959_length_368_cov_50.991903_pilon to pilon.fasta [pilon] Writing NODE_8960_length_368_cov_35.368421:1-368 changes to pilon.changes [pilon] Writing updated NODE_8960_length_368_cov_35.368421_pilon to pilon.fasta [pilon] Writing NODE_8961_length_368_cov_32.672065:1-368 changes to pilon.changes [pilon] Writing updated NODE_8961_length_368_cov_32.672065_pilon to pilon.fasta [pilon] Writing NODE_8962_length_368_cov_30.761134:1-368 changes to pilon.changes [pilon] Writing updated NODE_8962_length_368_cov_30.761134_pilon to pilon.fasta [pilon] Writing NODE_8963_length_368_cov_28.327935:1-368 changes to pilon.changes [pilon] Writing updated NODE_8963_length_368_cov_28.327935_pilon to pilon.fasta [pilon] Writing NODE_8964_length_368_cov_26.016194:1-368 changes to pilon.changes [pilon] Writing updated NODE_8964_length_368_cov_26.016194_pilon to pilon.fasta [pilon] Writing NODE_8965_length_368_cov_24.461538:1-368 changes to pilon.changes [pilon] Writing updated NODE_8965_length_368_cov_24.461538_pilon to pilon.fasta [pilon] Writing NODE_8966_length_368_cov_22.797571:1-368 changes to pilon.changes [pilon] Writing updated NODE_8966_length_368_cov_22.797571_pilon to pilon.fasta [pilon] Writing NODE_8967_length_368_cov_20.987854:1-368 changes to pilon.changes [pilon] Writing updated NODE_8967_length_368_cov_20.987854_pilon to pilon.fasta [pilon] Writing NODE_8968_length_368_cov_20.906883:1-368 changes to pilon.changes [pilon] Writing updated NODE_8968_length_368_cov_20.906883_pilon to pilon.fasta [pilon] Writing NODE_8969_length_368_cov_16.093117:1-368 changes to pilon.changes [pilon] Writing updated NODE_8969_length_368_cov_16.093117_pilon to pilon.fasta [pilon] Writing NODE_8970_length_368_cov_13.089069:1-368 changes to pilon.changes [pilon] Writing updated NODE_8970_length_368_cov_13.089069_pilon to pilon.fasta [pilon] Writing NODE_8971_length_368_cov_12.769231:1-368 changes to pilon.changes [pilon] Writing updated NODE_8971_length_368_cov_12.769231_pilon to pilon.fasta [pilon] Writing NODE_8972_length_368_cov_9.939271:1-368 changes to pilon.changes [pilon] Writing updated NODE_8972_length_368_cov_9.939271_pilon to pilon.fasta [pilon] Writing NODE_8973_length_368_cov_9.716599:1-368 changes to pilon.changes [pilon] Writing updated NODE_8973_length_368_cov_9.716599_pilon to pilon.fasta [pilon] Writing NODE_8974_length_368_cov_4.668016:1-368 changes to pilon.changes [pilon] Writing updated NODE_8974_length_368_cov_4.668016_pilon to pilon.fasta [pilon] Writing NODE_8975_length_367_cov_68.760163:1-367 changes to pilon.changes [pilon] Writing updated NODE_8975_length_367_cov_68.760163_pilon to pilon.fasta [pilon] Writing NODE_8976_length_367_cov_59.650407:1-367 changes to pilon.changes [pilon] Writing updated NODE_8976_length_367_cov_59.650407_pilon to pilon.fasta [pilon] Writing NODE_8977_length_367_cov_58.971545:1-367 changes to pilon.changes [pilon] Writing updated NODE_8977_length_367_cov_58.971545_pilon to pilon.fasta [pilon] Writing NODE_8978_length_367_cov_29.130081:1-367 changes to pilon.changes [pilon] Writing updated NODE_8978_length_367_cov_29.130081_pilon to pilon.fasta [pilon] Writing NODE_8979_length_367_cov_28.691057:1-367 changes to pilon.changes [pilon] Writing updated NODE_8979_length_367_cov_28.691057_pilon to pilon.fasta [pilon] Writing NODE_8980_length_367_cov_28.577236:1-367 changes to pilon.changes [pilon] Writing updated NODE_8980_length_367_cov_28.577236_pilon to pilon.fasta [pilon] Writing NODE_8981_length_367_cov_27.199187:1-367 changes to pilon.changes [pilon] Writing updated NODE_8981_length_367_cov_27.199187_pilon to pilon.fasta [pilon] Writing NODE_8982_length_367_cov_22.455285:1-367 changes to pilon.changes [pilon] Writing updated NODE_8982_length_367_cov_22.455285_pilon to pilon.fasta [pilon] Writing NODE_8983_length_367_cov_21.524390:1-367 changes to pilon.changes [pilon] Writing updated NODE_8983_length_367_cov_21.524390_pilon to pilon.fasta [pilon] Writing NODE_8984_length_367_cov_20.231707:1-367 changes to pilon.changes [pilon] Writing updated NODE_8984_length_367_cov_20.231707_pilon to pilon.fasta [pilon] Writing NODE_8985_length_367_cov_19.686992:1-367 changes to pilon.changes [pilon] Writing updated NODE_8985_length_367_cov_19.686992_pilon to pilon.fasta [pilon] Writing NODE_8986_length_367_cov_17.479675:1-367 changes to pilon.changes [pilon] Writing updated NODE_8986_length_367_cov_17.479675_pilon to pilon.fasta [pilon] Writing NODE_8987_length_367_cov_16.394309:1-367 changes to pilon.changes [pilon] Writing updated NODE_8987_length_367_cov_16.394309_pilon to pilon.fasta [pilon] Writing NODE_8988_length_367_cov_16.325203:1-367 changes to pilon.changes [pilon] Writing updated NODE_8988_length_367_cov_16.325203_pilon to pilon.fasta [pilon] Writing NODE_8989_length_367_cov_15.073171:1-367 changes to pilon.changes [pilon] Writing updated NODE_8989_length_367_cov_15.073171_pilon to pilon.fasta [pilon] Writing NODE_8990_length_367_cov_12.130081:1-367 changes to pilon.changes [pilon] Writing updated NODE_8990_length_367_cov_12.130081_pilon to pilon.fasta [pilon] Writing NODE_8991_length_367_cov_11.731707:1-367 changes to pilon.changes [pilon] Writing updated NODE_8991_length_367_cov_11.731707_pilon to pilon.fasta [pilon] Writing NODE_8992_length_367_cov_11.715447:1-367 changes to pilon.changes [pilon] Writing updated NODE_8992_length_367_cov_11.715447_pilon to pilon.fasta [pilon] Writing NODE_8993_length_367_cov_10.032520:1-367 changes to pilon.changes [pilon] Writing updated NODE_8993_length_367_cov_10.032520_pilon to pilon.fasta [pilon] Writing NODE_8994_length_367_cov_8.069106:1-367 changes to pilon.changes [pilon] Writing updated NODE_8994_length_367_cov_8.069106_pilon to pilon.fasta [pilon] Writing NODE_8995_length_366_cov_67.832653:1-366 changes to pilon.changes [pilon] Writing updated NODE_8995_length_366_cov_67.832653_pilon to pilon.fasta [pilon] Writing NODE_8996_length_366_cov_45.118367:1-366 changes to pilon.changes [pilon] Writing updated NODE_8996_length_366_cov_45.118367_pilon to pilon.fasta [pilon] Writing NODE_8997_length_366_cov_35.591837:1-366 changes to pilon.changes [pilon] Writing updated NODE_8997_length_366_cov_35.591837_pilon to pilon.fasta [pilon] Writing NODE_8998_length_366_cov_35.224490:1-366 changes to pilon.changes [pilon] Writing updated NODE_8998_length_366_cov_35.224490_pilon to pilon.fasta [pilon] Writing NODE_8999_length_366_cov_28.559184:1-366 changes to pilon.changes [pilon] Writing updated NODE_8999_length_366_cov_28.559184_pilon to pilon.fasta [pilon] Writing NODE_9000_length_366_cov_27.620408:1-366 changes to pilon.changes [pilon] Writing updated NODE_9000_length_366_cov_27.620408_pilon to pilon.fasta [pilon] Writing NODE_9001_length_366_cov_26.416327:1-366 changes to pilon.changes [pilon] Writing updated NODE_9001_length_366_cov_26.416327_pilon to pilon.fasta [pilon] Writing NODE_9002_length_366_cov_25.963265:1-366 changes to pilon.changes [pilon] Writing updated NODE_9002_length_366_cov_25.963265_pilon to pilon.fasta [pilon] Writing NODE_9003_length_366_cov_24.702041:1-366 changes to pilon.changes [pilon] Writing updated NODE_9003_length_366_cov_24.702041_pilon to pilon.fasta [pilon] Writing NODE_9004_length_366_cov_24.428571:1-366 changes to pilon.changes [pilon] Writing updated NODE_9004_length_366_cov_24.428571_pilon to pilon.fasta [pilon] Writing NODE_9005_length_366_cov_20.857143:1-366 changes to pilon.changes [pilon] Writing updated NODE_9005_length_366_cov_20.857143_pilon to pilon.fasta [pilon] Writing NODE_9006_length_366_cov_18.346939:1-366 changes to pilon.changes [pilon] Writing updated NODE_9006_length_366_cov_18.346939_pilon to pilon.fasta [pilon] Writing NODE_9007_length_366_cov_15.371429:1-366 changes to pilon.changes [pilon] Writing updated NODE_9007_length_366_cov_15.371429_pilon to pilon.fasta [pilon] Writing NODE_9008_length_366_cov_14.689796:1-366 changes to pilon.changes [pilon] Writing updated NODE_9008_length_366_cov_14.689796_pilon to pilon.fasta [pilon] Writing NODE_9009_length_366_cov_14.342857:1-366 changes to pilon.changes [pilon] Writing updated NODE_9009_length_366_cov_14.342857_pilon to pilon.fasta [pilon] Writing NODE_9010_length_366_cov_12.718367:1-366 changes to pilon.changes [pilon] Writing updated NODE_9010_length_366_cov_12.718367_pilon to pilon.fasta [pilon] Writing NODE_9011_length_366_cov_12.146939:1-366 changes to pilon.changes [pilon] Writing updated NODE_9011_length_366_cov_12.146939_pilon to pilon.fasta [pilon] Writing NODE_9012_length_366_cov_11.530612:1-366 changes to pilon.changes [pilon] Writing updated NODE_9012_length_366_cov_11.530612_pilon to pilon.fasta [pilon] Writing NODE_9013_length_366_cov_10.836735:1-366 changes to pilon.changes [pilon] Writing updated NODE_9013_length_366_cov_10.836735_pilon to pilon.fasta [pilon] Writing NODE_9014_length_366_cov_10.828571:1-366 changes to pilon.changes [pilon] Writing updated NODE_9014_length_366_cov_10.828571_pilon to pilon.fasta [pilon] Writing NODE_9015_length_366_cov_10.346939:1-366 changes to pilon.changes [pilon] Writing updated NODE_9015_length_366_cov_10.346939_pilon to pilon.fasta [pilon] Writing NODE_9016_length_366_cov_9.424490:1-366 changes to pilon.changes [pilon] Writing updated NODE_9016_length_366_cov_9.424490_pilon to pilon.fasta [pilon] Writing NODE_9017_length_366_cov_9.408163:1-366 changes to pilon.changes [pilon] Writing updated NODE_9017_length_366_cov_9.408163_pilon to pilon.fasta [pilon] Writing NODE_9018_length_366_cov_7.600000:1-366 changes to pilon.changes [pilon] Writing updated NODE_9018_length_366_cov_7.600000_pilon to pilon.fasta [pilon] Writing NODE_9019_length_366_cov_6.048980:1-366 changes to pilon.changes [pilon] Writing updated NODE_9019_length_366_cov_6.048980_pilon to pilon.fasta [pilon] Writing NODE_9020_length_366_cov_2.200000:1-366 changes to pilon.changes [pilon] Writing updated NODE_9020_length_366_cov_2.200000_pilon to pilon.fasta [pilon] Writing NODE_9021_length_365_cov_70.176230:1-365 changes to pilon.changes [pilon] Writing updated NODE_9021_length_365_cov_70.176230_pilon to pilon.fasta [pilon] Writing NODE_9022_length_365_cov_54.323770:1-365 changes to pilon.changes [pilon] Writing updated NODE_9022_length_365_cov_54.323770_pilon to pilon.fasta [pilon] Writing NODE_9023_length_365_cov_43.245902:1-365 changes to pilon.changes [pilon] Writing updated NODE_9023_length_365_cov_43.245902_pilon to pilon.fasta [pilon] Writing NODE_9024_length_365_cov_32.840164:1-365 changes to pilon.changes [pilon] Writing updated NODE_9024_length_365_cov_32.840164_pilon to pilon.fasta [pilon] Writing NODE_9025_length_365_cov_28.815574:1-365 changes to pilon.changes [pilon] Writing updated NODE_9025_length_365_cov_28.815574_pilon to pilon.fasta [pilon] Writing NODE_9026_length_365_cov_24.008197:1-365 changes to pilon.changes [pilon] Writing updated NODE_9026_length_365_cov_24.008197_pilon to pilon.fasta [pilon] Writing NODE_9027_length_365_cov_23.762295:1-365 changes to pilon.changes [pilon] Writing updated NODE_9027_length_365_cov_23.762295_pilon to pilon.fasta [pilon] Writing NODE_9028_length_365_cov_19.450820:1-365 changes to pilon.changes [pilon] Writing updated NODE_9028_length_365_cov_19.450820_pilon to pilon.fasta [pilon] Writing NODE_9029_length_365_cov_16.155738:1-365 changes to pilon.changes [pilon] Writing updated NODE_9029_length_365_cov_16.155738_pilon to pilon.fasta [pilon] Writing NODE_9030_length_365_cov_13.950820:1-365 changes to pilon.changes [pilon] Writing updated NODE_9030_length_365_cov_13.950820_pilon to pilon.fasta [pilon] Writing NODE_9031_length_365_cov_12.610656:1-365 changes to pilon.changes [pilon] Writing updated NODE_9031_length_365_cov_12.610656_pilon to pilon.fasta [pilon] Writing NODE_9032_length_365_cov_11.036885:1-365 changes to pilon.changes [pilon] Writing updated NODE_9032_length_365_cov_11.036885_pilon to pilon.fasta [pilon] Writing NODE_9033_length_365_cov_6.118852:1-365 changes to pilon.changes [pilon] Writing updated NODE_9033_length_365_cov_6.118852_pilon to pilon.fasta [pilon] Writing NODE_9034_length_364_cov_67.246914:1-364 changes to pilon.changes [pilon] Writing updated NODE_9034_length_364_cov_67.246914_pilon to pilon.fasta [pilon] Writing NODE_9035_length_364_cov_66.197531:1-364 changes to pilon.changes [pilon] Writing updated NODE_9035_length_364_cov_66.197531_pilon to pilon.fasta [pilon] Writing NODE_9036_length_364_cov_48.255144:1-364 changes to pilon.changes [pilon] Writing updated NODE_9036_length_364_cov_48.255144_pilon to pilon.fasta [pilon] Writing NODE_9037_length_364_cov_36.337449:1-364 changes to pilon.changes [pilon] Writing updated NODE_9037_length_364_cov_36.337449_pilon to pilon.fasta [pilon] Writing NODE_9038_length_364_cov_25.958848:1-364 changes to pilon.changes [pilon] Writing updated NODE_9038_length_364_cov_25.958848_pilon to pilon.fasta [pilon] Writing NODE_9039_length_364_cov_24.127572:1-364 changes to pilon.changes [pilon] Writing updated NODE_9039_length_364_cov_24.127572_pilon to pilon.fasta [pilon] Writing NODE_9040_length_364_cov_23.016461:1-364 changes to pilon.changes [pilon] Writing updated NODE_9040_length_364_cov_23.016461_pilon to pilon.fasta [pilon] Writing NODE_9041_length_364_cov_18.370370:1-364 changes to pilon.changes [pilon] Writing updated NODE_9041_length_364_cov_18.370370_pilon to pilon.fasta [pilon] Writing NODE_9042_length_364_cov_16.687243:1-364 changes to pilon.changes [pilon] Writing updated NODE_9042_length_364_cov_16.687243_pilon to pilon.fasta [pilon] Writing NODE_9043_length_364_cov_15.300412:1-364 changes to pilon.changes [pilon] Writing updated NODE_9043_length_364_cov_15.300412_pilon to pilon.fasta [pilon] Writing NODE_9044_length_364_cov_13.238683:1-364 changes to pilon.changes [pilon] Writing updated NODE_9044_length_364_cov_13.238683_pilon to pilon.fasta [pilon] Writing NODE_9045_length_364_cov_13.222222:1-364 changes to pilon.changes [pilon] Writing updated NODE_9045_length_364_cov_13.222222_pilon to pilon.fasta [pilon] Writing NODE_9046_length_363_cov_42.690083:1-363 changes to pilon.changes [pilon] Writing updated NODE_9046_length_363_cov_42.690083_pilon to pilon.fasta [pilon] Writing NODE_9047_length_363_cov_39.185950:1-363 changes to pilon.changes [pilon] Writing updated NODE_9047_length_363_cov_39.185950_pilon to pilon.fasta [pilon] Writing NODE_9048_length_363_cov_38.669421:1-363 changes to pilon.changes [pilon] Writing updated NODE_9048_length_363_cov_38.669421_pilon to pilon.fasta [pilon] Writing NODE_9049_length_363_cov_36.219008:1-363 changes to pilon.changes [pilon] Writing updated NODE_9049_length_363_cov_36.219008_pilon to pilon.fasta [pilon] Writing NODE_9050_length_363_cov_34.772727:1-363 changes to pilon.changes [pilon] Writing updated NODE_9050_length_363_cov_34.772727_pilon to pilon.fasta [pilon] Writing NODE_9051_length_363_cov_31.309917:1-363 changes to pilon.changes [pilon] Writing updated NODE_9051_length_363_cov_31.309917_pilon to pilon.fasta [pilon] Writing NODE_9052_length_363_cov_31.128099:1-363 changes to pilon.changes [pilon] Writing updated NODE_9052_length_363_cov_31.128099_pilon to pilon.fasta [pilon] Writing NODE_9053_length_363_cov_30.078512:1-363 changes to pilon.changes [pilon] Writing updated NODE_9053_length_363_cov_30.078512_pilon to pilon.fasta [pilon] Writing NODE_9054_length_363_cov_28.942149:1-363 changes to pilon.changes [pilon] Writing updated NODE_9054_length_363_cov_28.942149_pilon to pilon.fasta [pilon] Writing NODE_9055_length_363_cov_27.743802:1-363 changes to pilon.changes [pilon] Writing updated NODE_9055_length_363_cov_27.743802_pilon to pilon.fasta [pilon] Writing NODE_9056_length_363_cov_27.466942:1-363 changes to pilon.changes [pilon] Writing updated NODE_9056_length_363_cov_27.466942_pilon to pilon.fasta [pilon] Writing NODE_9057_length_363_cov_27.181818:1-363 changes to pilon.changes [pilon] Writing updated NODE_9057_length_363_cov_27.181818_pilon to pilon.fasta [pilon] Writing NODE_9058_length_363_cov_26.896694:1-363 changes to pilon.changes [pilon] Writing updated NODE_9058_length_363_cov_26.896694_pilon to pilon.fasta [pilon] Writing NODE_9059_length_363_cov_26.219008:1-363 changes to pilon.changes [pilon] Writing updated NODE_9059_length_363_cov_26.219008_pilon to pilon.fasta [pilon] Writing NODE_9060_length_363_cov_25.185950:1-363 changes to pilon.changes [pilon] Writing updated NODE_9060_length_363_cov_25.185950_pilon to pilon.fasta [pilon] Writing NODE_9061_length_363_cov_25.078512:1-363 changes to pilon.changes [pilon] Writing updated NODE_9061_length_363_cov_25.078512_pilon to pilon.fasta [pilon] Writing NODE_9062_length_363_cov_23.855372:1-363 changes to pilon.changes [pilon] Writing updated NODE_9062_length_363_cov_23.855372_pilon to pilon.fasta [pilon] Writing NODE_9063_length_363_cov_23.128099:1-363 changes to pilon.changes [pilon] Writing updated NODE_9063_length_363_cov_23.128099_pilon to pilon.fasta [pilon] Writing NODE_9064_length_363_cov_22.173554:1-363 changes to pilon.changes [pilon] Writing updated NODE_9064_length_363_cov_22.173554_pilon to pilon.fasta [pilon] Writing NODE_9065_length_363_cov_21.991736:1-363 changes to pilon.changes [pilon] Writing updated NODE_9065_length_363_cov_21.991736_pilon to pilon.fasta [pilon] Writing NODE_9066_length_363_cov_21.198347:1-363 changes to pilon.changes [pilon] Writing updated NODE_9066_length_363_cov_21.198347_pilon to pilon.fasta [pilon] Writing NODE_9067_length_363_cov_20.475207:1-363 changes to pilon.changes [pilon] Writing updated NODE_9067_length_363_cov_20.475207_pilon to pilon.fasta [pilon] Writing NODE_9068_length_363_cov_18.747934:1-363 changes to pilon.changes [pilon] Writing updated NODE_9068_length_363_cov_18.747934_pilon to pilon.fasta [pilon] Writing NODE_9069_length_363_cov_17.173554:1-363 changes to pilon.changes [pilon] Writing updated NODE_9069_length_363_cov_17.173554_pilon to pilon.fasta [pilon] Writing NODE_9070_length_363_cov_16.929752:1-363 changes to pilon.changes [pilon] Writing updated NODE_9070_length_363_cov_16.929752_pilon to pilon.fasta [pilon] Writing NODE_9071_length_363_cov_16.512397:1-363 changes to pilon.changes [pilon] Writing updated NODE_9071_length_363_cov_16.512397_pilon to pilon.fasta [pilon] Writing NODE_9072_length_363_cov_16.409091:1-363 changes to pilon.changes [pilon] Writing updated NODE_9072_length_363_cov_16.409091_pilon to pilon.fasta [pilon] Writing NODE_9073_length_363_cov_16.322314:1-363 changes to pilon.changes [pilon] Writing updated NODE_9073_length_363_cov_16.322314_pilon to pilon.fasta [pilon] Writing NODE_9074_length_363_cov_15.747934:1-363 changes to pilon.changes [pilon] Writing updated NODE_9074_length_363_cov_15.747934_pilon to pilon.fasta [pilon] Writing NODE_9075_length_363_cov_15.429752:1-363 changes to pilon.changes [pilon] Writing updated NODE_9075_length_363_cov_15.429752_pilon to pilon.fasta [pilon] Writing NODE_9076_length_363_cov_14.780992:1-363 changes to pilon.changes [pilon] Writing updated NODE_9076_length_363_cov_14.780992_pilon to pilon.fasta [pilon] Writing NODE_9077_length_363_cov_14.322314:1-363 changes to pilon.changes [pilon] Writing updated NODE_9077_length_363_cov_14.322314_pilon to pilon.fasta [pilon] Writing NODE_9078_length_363_cov_14.148760:1-363 changes to pilon.changes [pilon] Writing updated NODE_9078_length_363_cov_14.148760_pilon to pilon.fasta [pilon] Writing NODE_9079_length_363_cov_13.954545:1-363 changes to pilon.changes [pilon] Writing updated NODE_9079_length_363_cov_13.954545_pilon to pilon.fasta [pilon] Writing NODE_9080_length_363_cov_12.623967:1-363 changes to pilon.changes [pilon] Writing updated NODE_9080_length_363_cov_12.623967_pilon to pilon.fasta [pilon] Writing NODE_9081_length_363_cov_10.706612:1-363 changes to pilon.changes [pilon] Writing updated NODE_9081_length_363_cov_10.706612_pilon to pilon.fasta [pilon] Writing NODE_9082_length_363_cov_4.165289:1-363 changes to pilon.changes [pilon] Writing updated NODE_9082_length_363_cov_4.165289_pilon to pilon.fasta [pilon] Writing NODE_9083_length_362_cov_54.074689:1-362 changes to pilon.changes [pilon] Writing updated NODE_9083_length_362_cov_54.074689_pilon to pilon.fasta [pilon] Writing NODE_9084_length_362_cov_45.431535:1-362 changes to pilon.changes [pilon] Writing updated NODE_9084_length_362_cov_45.431535_pilon to pilon.fasta [pilon] Writing NODE_9085_length_362_cov_36.348548:1-362 changes to pilon.changes [pilon] Writing updated NODE_9085_length_362_cov_36.348548_pilon to pilon.fasta [pilon] Writing NODE_9086_length_362_cov_26.730290:1-362 changes to pilon.changes [pilon] Writing updated NODE_9086_length_362_cov_26.730290_pilon to pilon.fasta [pilon] Writing NODE_9087_length_362_cov_25.323651:1-362 changes to pilon.changes [pilon] Writing updated NODE_9087_length_362_cov_25.323651_pilon to pilon.fasta [pilon] Writing NODE_9088_length_362_cov_25.091286:1-362 changes to pilon.changes [pilon] Writing updated NODE_9088_length_362_cov_25.091286_pilon to pilon.fasta [pilon] Writing NODE_9089_length_362_cov_17.829876:1-362 changes to pilon.changes [pilon] Writing updated NODE_9089_length_362_cov_17.829876_pilon to pilon.fasta [pilon] Writing NODE_9090_length_362_cov_15.618257:1-362 changes to pilon.changes [pilon] Writing updated NODE_9090_length_362_cov_15.618257_pilon to pilon.fasta [pilon] Writing NODE_9091_length_362_cov_13.995851:1-362 changes to pilon.changes [pilon] Writing updated NODE_9091_length_362_cov_13.995851_pilon to pilon.fasta [pilon] Writing NODE_9092_length_362_cov_12.780083:1-362 changes to pilon.changes [pilon] Writing updated NODE_9092_length_362_cov_12.780083_pilon to pilon.fasta [pilon] Writing NODE_9093_length_362_cov_12.286307:1-362 changes to pilon.changes [pilon] Writing updated NODE_9093_length_362_cov_12.286307_pilon to pilon.fasta [pilon] Writing NODE_9094_length_362_cov_7.842324:1-362 changes to pilon.changes [pilon] Writing updated NODE_9094_length_362_cov_7.842324_pilon to pilon.fasta [pilon] Writing NODE_9095_length_362_cov_5.979253:1-362 changes to pilon.changes [pilon] Writing updated NODE_9095_length_362_cov_5.979253_pilon to pilon.fasta [pilon] Writing NODE_9096_length_362_cov_4.626556:1-362 changes to pilon.changes [pilon] Writing updated NODE_9096_length_362_cov_4.626556_pilon to pilon.fasta [pilon] Writing NODE_9097_length_361_cov_44.254167:1-361 changes to pilon.changes [pilon] Writing updated NODE_9097_length_361_cov_44.254167_pilon to pilon.fasta [pilon] Writing NODE_9098_length_361_cov_39.212500:1-361 changes to pilon.changes [pilon] Writing updated NODE_9098_length_361_cov_39.212500_pilon to pilon.fasta [pilon] Writing NODE_9099_length_361_cov_27.387500:1-361 changes to pilon.changes [pilon] Writing updated NODE_9099_length_361_cov_27.387500_pilon to pilon.fasta [pilon] Writing NODE_9100_length_361_cov_24.100000:1-361 changes to pilon.changes [pilon] Writing updated NODE_9100_length_361_cov_24.100000_pilon to pilon.fasta [pilon] Writing NODE_9101_length_361_cov_23.979167:1-361 changes to pilon.changes [pilon] Writing updated NODE_9101_length_361_cov_23.979167_pilon to pilon.fasta [pilon] Writing NODE_9102_length_361_cov_21.304167:1-361 changes to pilon.changes [pilon] Writing updated NODE_9102_length_361_cov_21.304167_pilon to pilon.fasta [pilon] Writing NODE_9103_length_361_cov_19.837500:1-361 changes to pilon.changes [pilon] Writing updated NODE_9103_length_361_cov_19.837500_pilon to pilon.fasta [pilon] Writing NODE_9104_length_361_cov_18.820833:1-361 changes to pilon.changes [pilon] Writing updated NODE_9104_length_361_cov_18.820833_pilon to pilon.fasta [pilon] Writing NODE_9105_length_361_cov_18.329167:1-361 changes to pilon.changes [pilon] Writing updated NODE_9105_length_361_cov_18.329167_pilon to pilon.fasta [pilon] Writing NODE_9106_length_361_cov_17.083333:1-361 changes to pilon.changes [pilon] Writing updated NODE_9106_length_361_cov_17.083333_pilon to pilon.fasta [pilon] Writing NODE_9107_length_361_cov_15.854167:1-361 changes to pilon.changes [pilon] Writing updated NODE_9107_length_361_cov_15.854167_pilon to pilon.fasta [pilon] Writing NODE_9108_length_361_cov_14.733333:1-361 changes to pilon.changes [pilon] Writing updated NODE_9108_length_361_cov_14.733333_pilon to pilon.fasta [pilon] Writing NODE_9109_length_361_cov_13.000000:1-361 changes to pilon.changes [pilon] Writing updated NODE_9109_length_361_cov_13.000000_pilon to pilon.fasta [pilon] Writing NODE_9110_length_361_cov_11.616667:1-361 changes to pilon.changes [pilon] Writing updated NODE_9110_length_361_cov_11.616667_pilon to pilon.fasta [pilon] Writing NODE_9111_length_361_cov_5.562500:1-361 changes to pilon.changes [pilon] Writing updated NODE_9111_length_361_cov_5.562500_pilon to pilon.fasta [pilon] Writing NODE_9112_length_360_cov_57.514644:1-360 changes to pilon.changes [pilon] Writing updated NODE_9112_length_360_cov_57.514644_pilon to pilon.fasta [pilon] Writing NODE_9113_length_360_cov_54.790795:1-360 changes to pilon.changes [pilon] Writing updated NODE_9113_length_360_cov_54.790795_pilon to pilon.fasta [pilon] Writing NODE_9114_length_360_cov_36.125523:1-360 changes to pilon.changes [pilon] Writing updated NODE_9114_length_360_cov_36.125523_pilon to pilon.fasta [pilon] Writing NODE_9115_length_360_cov_31.422594:1-360 changes to pilon.changes [pilon] Writing updated NODE_9115_length_360_cov_31.422594_pilon to pilon.fasta [pilon] Writing NODE_9116_length_360_cov_29.711297:1-360 changes to pilon.changes [pilon] Writing updated NODE_9116_length_360_cov_29.711297_pilon to pilon.fasta [pilon] Writing NODE_9117_length_360_cov_29.518828:1-360 changes to pilon.changes [pilon] Writing updated NODE_9117_length_360_cov_29.518828_pilon to pilon.fasta [pilon] Writing NODE_9118_length_360_cov_26.974895:1-360 changes to pilon.changes [pilon] Writing updated NODE_9118_length_360_cov_26.974895_pilon to pilon.fasta [pilon] Writing NODE_9119_length_360_cov_26.464435:1-360 changes to pilon.changes [pilon] Writing updated NODE_9119_length_360_cov_26.464435_pilon to pilon.fasta [pilon] Writing NODE_9120_length_360_cov_25.485356:1-360 changes to pilon.changes [pilon] Writing updated NODE_9120_length_360_cov_25.485356_pilon to pilon.fasta [pilon] Writing NODE_9121_length_360_cov_23.623431:1-360 changes to pilon.changes [pilon] Writing updated NODE_9121_length_360_cov_23.623431_pilon to pilon.fasta [pilon] Writing NODE_9122_length_360_cov_23.083682:1-360 changes to pilon.changes [pilon] Writing updated NODE_9122_length_360_cov_23.083682_pilon to pilon.fasta [pilon] Writing NODE_9123_length_360_cov_22.389121:1-360 changes to pilon.changes [pilon] Writing updated NODE_9123_length_360_cov_22.389121_pilon to pilon.fasta [pilon] Writing NODE_9124_length_360_cov_22.368201:1-360 changes to pilon.changes [pilon] Writing updated NODE_9124_length_360_cov_22.368201_pilon to pilon.fasta [pilon] Writing NODE_9125_length_360_cov_20.234310:1-360 changes to pilon.changes [pilon] Writing updated NODE_9125_length_360_cov_20.234310_pilon to pilon.fasta [pilon] Writing NODE_9126_length_360_cov_20.016736:1-360 changes to pilon.changes [pilon] Writing updated NODE_9126_length_360_cov_20.016736_pilon to pilon.fasta [pilon] Writing NODE_9127_length_360_cov_19.435146:1-360 changes to pilon.changes [pilon] Writing updated NODE_9127_length_360_cov_19.435146_pilon to pilon.fasta [pilon] Writing NODE_9128_length_360_cov_19.033473:1-360 changes to pilon.changes [pilon] Writing updated NODE_9128_length_360_cov_19.033473_pilon to pilon.fasta [pilon] Writing NODE_9129_length_360_cov_18.707113:1-360 changes to pilon.changes [pilon] Writing updated NODE_9129_length_360_cov_18.707113_pilon to pilon.fasta [pilon] Writing NODE_9130_length_360_cov_18.589958:1-360 changes to pilon.changes [pilon] Writing updated NODE_9130_length_360_cov_18.589958_pilon to pilon.fasta [pilon] Writing NODE_9131_length_360_cov_18.062762:1-360 changes to pilon.changes [pilon] Writing updated NODE_9131_length_360_cov_18.062762_pilon to pilon.fasta [pilon] Writing NODE_9132_length_360_cov_17.753138:1-360 changes to pilon.changes [pilon] Writing updated NODE_9132_length_360_cov_17.753138_pilon to pilon.fasta [pilon] Writing NODE_9133_length_360_cov_16.970711:1-360 changes to pilon.changes [pilon] Writing updated NODE_9133_length_360_cov_16.970711_pilon to pilon.fasta [pilon] Writing NODE_9134_length_360_cov_16.962343:1-360 changes to pilon.changes [pilon] Writing updated NODE_9134_length_360_cov_16.962343_pilon to pilon.fasta [pilon] Writing NODE_9135_length_360_cov_15.970711:1-360 changes to pilon.changes [pilon] Writing updated NODE_9135_length_360_cov_15.970711_pilon to pilon.fasta [pilon] Writing NODE_9136_length_360_cov_15.920502:1-360 changes to pilon.changes [pilon] Writing updated NODE_9136_length_360_cov_15.920502_pilon to pilon.fasta [pilon] Writing NODE_9137_length_360_cov_15.184100:1-360 changes to pilon.changes [pilon] Writing updated NODE_9137_length_360_cov_15.184100_pilon to pilon.fasta [pilon] Writing NODE_9138_length_360_cov_14.958159:1-360 changes to pilon.changes [pilon] Writing updated NODE_9138_length_360_cov_14.958159_pilon to pilon.fasta [pilon] Writing NODE_9139_length_360_cov_14.866109:1-360 changes to pilon.changes [pilon] Writing updated NODE_9139_length_360_cov_14.866109_pilon to pilon.fasta [pilon] Writing NODE_9140_length_360_cov_14.359833:1-360 changes to pilon.changes [pilon] Writing updated NODE_9140_length_360_cov_14.359833_pilon to pilon.fasta [pilon] Writing NODE_9141_length_360_cov_14.046025:1-360 changes to pilon.changes [pilon] Writing updated NODE_9141_length_360_cov_14.046025_pilon to pilon.fasta [pilon] Writing NODE_9142_length_360_cov_13.924686:1-360 changes to pilon.changes [pilon] Writing updated NODE_9142_length_360_cov_13.924686_pilon to pilon.fasta [pilon] Writing NODE_9143_length_360_cov_13.606695:1-360 changes to pilon.changes [pilon] Writing updated NODE_9143_length_360_cov_13.606695_pilon to pilon.fasta [pilon] Writing NODE_9144_length_360_cov_13.581590:1-360 changes to pilon.changes [pilon] Writing updated NODE_9144_length_360_cov_13.581590_pilon to pilon.fasta [pilon] Writing NODE_9145_length_360_cov_12.815900:1-360 changes to pilon.changes [pilon] Writing updated NODE_9145_length_360_cov_12.815900_pilon to pilon.fasta [pilon] Writing NODE_9146_length_360_cov_12.037657:1-360 changes to pilon.changes [pilon] Writing updated NODE_9146_length_360_cov_12.037657_pilon to pilon.fasta [pilon] Writing NODE_9147_length_360_cov_11.476987:1-360 changes to pilon.changes [pilon] Writing updated NODE_9147_length_360_cov_11.476987_pilon to pilon.fasta [pilon] Writing NODE_9148_length_360_cov_11.133891:1-360 changes to pilon.changes [pilon] Writing updated NODE_9148_length_360_cov_11.133891_pilon to pilon.fasta [pilon] Writing NODE_9149_length_360_cov_10.158996:1-360 changes to pilon.changes [pilon] Writing updated NODE_9149_length_360_cov_10.158996_pilon to pilon.fasta [pilon] Writing NODE_9150_length_360_cov_9.682008:1-360 changes to pilon.changes [pilon] Writing updated NODE_9150_length_360_cov_9.682008_pilon to pilon.fasta [pilon] Writing NODE_9151_length_360_cov_9.372385:1-360 changes to pilon.changes [pilon] Writing updated NODE_9151_length_360_cov_9.372385_pilon to pilon.fasta [pilon] Writing NODE_9152_length_360_cov_9.154812:1-360 changes to pilon.changes [pilon] Writing updated NODE_9152_length_360_cov_9.154812_pilon to pilon.fasta [pilon] Writing NODE_9153_length_360_cov_9.012552:1-360 changes to pilon.changes [pilon] Writing updated NODE_9153_length_360_cov_9.012552_pilon to pilon.fasta [pilon] Writing NODE_9154_length_359_cov_63.428571:1-359 changes to pilon.changes [pilon] Writing updated NODE_9154_length_359_cov_63.428571_pilon to pilon.fasta [pilon] Writing NODE_9155_length_359_cov_49.815126:1-359 changes to pilon.changes [pilon] Writing updated NODE_9155_length_359_cov_49.815126_pilon to pilon.fasta [pilon] Writing NODE_9156_length_359_cov_46.777311:1-359 changes to pilon.changes [pilon] Writing updated NODE_9156_length_359_cov_46.777311_pilon to pilon.fasta [pilon] Writing NODE_9157_length_359_cov_38.831933:1-359 changes to pilon.changes [pilon] Writing updated NODE_9157_length_359_cov_38.831933_pilon to pilon.fasta [pilon] Writing NODE_9158_length_359_cov_29.991597:1-359 changes to pilon.changes [pilon] Writing updated NODE_9158_length_359_cov_29.991597_pilon to pilon.fasta [pilon] Writing NODE_9159_length_359_cov_29.037815:1-359 changes to pilon.changes [pilon] Writing updated NODE_9159_length_359_cov_29.037815_pilon to pilon.fasta [pilon] Writing NODE_9160_length_359_cov_20.957983:1-359 changes to pilon.changes [pilon] Writing updated NODE_9160_length_359_cov_20.957983_pilon to pilon.fasta [pilon] Writing NODE_9161_length_359_cov_20.701681:1-359 changes to pilon.changes [pilon] Writing updated NODE_9161_length_359_cov_20.701681_pilon to pilon.fasta [pilon] Writing NODE_9162_length_359_cov_19.642857:1-359 changes to pilon.changes [pilon] Writing updated NODE_9162_length_359_cov_19.642857_pilon to pilon.fasta [pilon] Writing NODE_9163_length_359_cov_15.264706:1-359 changes to pilon.changes [pilon] Writing updated NODE_9163_length_359_cov_15.264706_pilon to pilon.fasta [pilon] Writing NODE_9164_length_359_cov_12.512605:1-359 changes to pilon.changes [pilon] Writing updated NODE_9164_length_359_cov_12.512605_pilon to pilon.fasta [pilon] Writing NODE_9165_length_359_cov_12.415966:1-359 changes to pilon.changes [pilon] Writing updated NODE_9165_length_359_cov_12.415966_pilon to pilon.fasta [pilon] Writing NODE_9166_length_359_cov_11.537815:1-359 changes to pilon.changes [pilon] Writing updated NODE_9166_length_359_cov_11.537815_pilon to pilon.fasta [pilon] Writing NODE_9167_length_359_cov_11.176471:1-359 changes to pilon.changes [pilon] Writing updated NODE_9167_length_359_cov_11.176471_pilon to pilon.fasta [pilon] Writing NODE_9168_length_359_cov_10.764706:1-359 changes to pilon.changes [pilon] Writing updated NODE_9168_length_359_cov_10.764706_pilon to pilon.fasta [pilon] Writing NODE_9169_length_359_cov_9.260504:1-359 changes to pilon.changes [pilon] Writing updated NODE_9169_length_359_cov_9.260504_pilon to pilon.fasta [pilon] Writing NODE_9170_length_359_cov_7.802521:1-359 changes to pilon.changes [pilon] Writing updated NODE_9170_length_359_cov_7.802521_pilon to pilon.fasta [pilon] Writing NODE_9171_length_358_cov_44.835443:1-358 changes to pilon.changes [pilon] Writing updated NODE_9171_length_358_cov_44.835443_pilon to pilon.fasta [pilon] Writing NODE_9172_length_358_cov_34.257384:1-358 changes to pilon.changes [pilon] Writing updated NODE_9172_length_358_cov_34.257384_pilon to pilon.fasta [pilon] Writing NODE_9173_length_358_cov_27.556962:1-358 changes to pilon.changes [pilon] Writing updated NODE_9173_length_358_cov_27.556962_pilon to pilon.fasta [pilon] Writing NODE_9174_length_358_cov_24.700422:1-358 changes to pilon.changes [pilon] Writing updated NODE_9174_length_358_cov_24.700422_pilon to pilon.fasta [pilon] Writing NODE_9175_length_358_cov_21.869198:1-358 changes to pilon.changes [pilon] Writing updated NODE_9175_length_358_cov_21.869198_pilon to pilon.fasta [pilon] Writing NODE_9176_length_358_cov_19.945148:1-358 changes to pilon.changes [pilon] Writing updated NODE_9176_length_358_cov_19.945148_pilon to pilon.fasta [pilon] Writing NODE_9177_length_358_cov_18.628692:1-358 changes to pilon.changes [pilon] Writing updated NODE_9177_length_358_cov_18.628692_pilon to pilon.fasta [pilon] Writing NODE_9178_length_358_cov_14.725738:1-358 changes to pilon.changes [pilon] Writing updated NODE_9178_length_358_cov_14.725738_pilon to pilon.fasta [pilon] Writing NODE_9179_length_358_cov_12.864979:1-358 changes to pilon.changes [pilon] Writing updated NODE_9179_length_358_cov_12.864979_pilon to pilon.fasta [pilon] Writing NODE_9180_length_358_cov_10.084388:1-358 changes to pilon.changes [pilon] Writing updated NODE_9180_length_358_cov_10.084388_pilon to pilon.fasta [pilon] Writing NODE_9181_length_358_cov_7.687764:1-358 changes to pilon.changes [pilon] Writing updated NODE_9181_length_358_cov_7.687764_pilon to pilon.fasta [pilon] Writing NODE_9182_length_358_cov_5.763713:1-358 changes to pilon.changes [pilon] Writing updated NODE_9182_length_358_cov_5.763713_pilon to pilon.fasta [pilon] Writing NODE_9183_length_358_cov_5.265823:1-358 changes to pilon.changes [pilon] Writing updated NODE_9183_length_358_cov_5.265823_pilon to pilon.fasta [pilon] Writing NODE_9184_length_357_cov_38.436441:1-357 changes to pilon.changes [pilon] Writing updated NODE_9184_length_357_cov_38.436441_pilon to pilon.fasta [pilon] Writing NODE_9185_length_357_cov_35.953390:1-357 changes to pilon.changes [pilon] Writing updated NODE_9185_length_357_cov_35.953390_pilon to pilon.fasta [pilon] Writing NODE_9186_length_357_cov_34.665254:1-357 changes to pilon.changes [pilon] Writing updated NODE_9186_length_357_cov_34.665254_pilon to pilon.fasta [pilon] Writing NODE_9187_length_357_cov_32.872881:1-357 changes to pilon.changes [pilon] Writing updated NODE_9187_length_357_cov_32.872881_pilon to pilon.fasta [pilon] Writing NODE_9188_length_357_cov_32.783898:1-357 changes to pilon.changes [pilon] Writing updated NODE_9188_length_357_cov_32.783898_pilon to pilon.fasta [pilon] Writing NODE_9189_length_357_cov_32.436441:1-357 changes to pilon.changes [pilon] Writing updated NODE_9189_length_357_cov_32.436441_pilon to pilon.fasta [pilon] Writing NODE_9190_length_357_cov_29.669492:1-357 changes to pilon.changes [pilon] Writing updated NODE_9190_length_357_cov_29.669492_pilon to pilon.fasta [pilon] Writing NODE_9191_length_357_cov_29.576271:1-357 changes to pilon.changes [pilon] Writing updated NODE_9191_length_357_cov_29.576271_pilon to pilon.fasta [pilon] Writing NODE_9192_length_357_cov_29.470339:1-357 changes to pilon.changes [pilon] Writing updated NODE_9192_length_357_cov_29.470339_pilon to pilon.fasta [pilon] Writing NODE_9193_length_357_cov_28.750000:1-357 changes to pilon.changes [pilon] Writing updated NODE_9193_length_357_cov_28.750000_pilon to pilon.fasta [pilon] Writing NODE_9194_length_357_cov_27.906780:1-357 changes to pilon.changes [pilon] Writing updated NODE_9194_length_357_cov_27.906780_pilon to pilon.fasta [pilon] Writing NODE_9195_length_357_cov_27.733051:1-357 changes to pilon.changes [pilon] Writing updated NODE_9195_length_357_cov_27.733051_pilon to pilon.fasta [pilon] Writing NODE_9196_length_357_cov_27.190678:1-357 changes to pilon.changes [pilon] Writing updated NODE_9196_length_357_cov_27.190678_pilon to pilon.fasta [pilon] Writing NODE_9197_length_357_cov_25.529661:1-357 changes to pilon.changes [pilon] Writing updated NODE_9197_length_357_cov_25.529661_pilon to pilon.fasta [pilon] Writing NODE_9198_length_357_cov_24.487288:1-357 changes to pilon.changes [pilon] Writing updated NODE_9198_length_357_cov_24.487288_pilon to pilon.fasta [pilon] Writing NODE_9199_length_357_cov_23.529661:1-357 changes to pilon.changes [pilon] Writing updated NODE_9199_length_357_cov_23.529661_pilon to pilon.fasta [pilon] Writing NODE_9200_length_357_cov_23.372881:1-357 changes to pilon.changes [pilon] Writing updated NODE_9200_length_357_cov_23.372881_pilon to pilon.fasta [pilon] Writing NODE_9201_length_357_cov_22.940678:1-357 changes to pilon.changes [pilon] Writing updated NODE_9201_length_357_cov_22.940678_pilon to pilon.fasta [pilon] Writing NODE_9202_length_357_cov_21.508475:1-357 changes to pilon.changes [pilon] Writing updated NODE_9202_length_357_cov_21.508475_pilon to pilon.fasta [pilon] Writing NODE_9203_length_357_cov_21.254237:1-357 changes to pilon.changes [pilon] Writing updated NODE_9203_length_357_cov_21.254237_pilon to pilon.fasta [pilon] Writing NODE_9204_length_357_cov_20.211864:1-357 changes to pilon.changes [pilon] Writing updated NODE_9204_length_357_cov_20.211864_pilon to pilon.fasta [pilon] Writing NODE_9205_length_357_cov_19.478814:1-357 changes to pilon.changes [pilon] Writing updated NODE_9205_length_357_cov_19.478814_pilon to pilon.fasta [pilon] Writing NODE_9206_length_357_cov_19.203390:1-357 changes to pilon.changes [pilon] Writing updated NODE_9206_length_357_cov_19.203390_pilon to pilon.fasta [pilon] Writing NODE_9207_length_357_cov_19.169492:1-357 changes to pilon.changes [pilon] Writing updated NODE_9207_length_357_cov_19.169492_pilon to pilon.fasta [pilon] Writing NODE_9208_length_357_cov_18.724576:1-357 changes to pilon.changes [pilon] Writing updated NODE_9208_length_357_cov_18.724576_pilon to pilon.fasta [pilon] Writing NODE_9209_length_357_cov_18.644068:1-357 changes to pilon.changes [pilon] Writing updated NODE_9209_length_357_cov_18.644068_pilon to pilon.fasta [pilon] Writing NODE_9210_length_357_cov_18.601695:1-357 changes to pilon.changes [pilon] Writing updated NODE_9210_length_357_cov_18.601695_pilon to pilon.fasta [pilon] Writing NODE_9211_length_357_cov_18.588983:1-357 changes to pilon.changes [pilon] Writing updated NODE_9211_length_357_cov_18.588983_pilon to pilon.fasta [pilon] Writing NODE_9212_length_357_cov_18.436441:1-357 changes to pilon.changes [pilon] Writing updated NODE_9212_length_357_cov_18.436441_pilon to pilon.fasta [pilon] Writing NODE_9213_length_357_cov_17.830508:1-357 changes to pilon.changes [pilon] Writing updated NODE_9213_length_357_cov_17.830508_pilon to pilon.fasta [pilon] Writing NODE_9214_length_357_cov_17.754237:1-357 changes to pilon.changes [pilon] Writing updated NODE_9214_length_357_cov_17.754237_pilon to pilon.fasta [pilon] Writing NODE_9215_length_357_cov_16.792373:1-357 changes to pilon.changes [pilon] Writing updated NODE_9215_length_357_cov_16.792373_pilon to pilon.fasta [pilon] Writing NODE_9216_length_357_cov_16.563559:1-357 changes to pilon.changes [pilon] Writing updated NODE_9216_length_357_cov_16.563559_pilon to pilon.fasta [pilon] Writing NODE_9217_length_357_cov_16.127119:1-357 changes to pilon.changes [pilon] Writing updated NODE_9217_length_357_cov_16.127119_pilon to pilon.fasta [pilon] Writing NODE_9218_length_357_cov_15.978814:1-357 changes to pilon.changes [pilon] Writing updated NODE_9218_length_357_cov_15.978814_pilon to pilon.fasta [pilon] Writing NODE_9219_length_357_cov_15.766949:1-357 changes to pilon.changes [pilon] Writing updated NODE_9219_length_357_cov_15.766949_pilon to pilon.fasta [pilon] Writing NODE_9220_length_357_cov_15.326271:1-357 changes to pilon.changes [pilon] Writing updated NODE_9220_length_357_cov_15.326271_pilon to pilon.fasta [pilon] Writing NODE_9221_length_357_cov_13.444915:1-357 changes to pilon.changes [pilon] Writing updated NODE_9221_length_357_cov_13.444915_pilon to pilon.fasta [pilon] Writing NODE_9222_length_357_cov_12.389831:1-357 changes to pilon.changes [pilon] Writing updated NODE_9222_length_357_cov_12.389831_pilon to pilon.fasta [pilon] Writing NODE_9223_length_357_cov_12.139831:1-357 changes to pilon.changes [pilon] Writing updated NODE_9223_length_357_cov_12.139831_pilon to pilon.fasta [pilon] Writing NODE_9224_length_357_cov_12.072034:1-357 changes to pilon.changes [pilon] Writing updated NODE_9224_length_357_cov_12.072034_pilon to pilon.fasta [pilon] Writing NODE_9225_length_357_cov_11.228814:1-357 changes to pilon.changes [pilon] Writing updated NODE_9225_length_357_cov_11.228814_pilon to pilon.fasta [pilon] Writing NODE_9226_length_357_cov_10.686441:1-357 changes to pilon.changes [pilon] Writing updated NODE_9226_length_357_cov_10.686441_pilon to pilon.fasta [pilon] Writing NODE_9227_length_357_cov_10.271186:1-357 changes to pilon.changes [pilon] Writing updated NODE_9227_length_357_cov_10.271186_pilon to pilon.fasta [pilon] Writing NODE_9228_length_357_cov_10.144068:1-357 changes to pilon.changes [pilon] Writing updated NODE_9228_length_357_cov_10.144068_pilon to pilon.fasta [pilon] Writing NODE_9229_length_357_cov_9.313559:1-357 changes to pilon.changes [pilon] Writing updated NODE_9229_length_357_cov_9.313559_pilon to pilon.fasta [pilon] Writing NODE_9230_length_357_cov_8.872881:1-357 changes to pilon.changes [pilon] Writing updated NODE_9230_length_357_cov_8.872881_pilon to pilon.fasta [pilon] Writing NODE_9231_length_357_cov_8.512712:1-357 changes to pilon.changes [pilon] Writing updated NODE_9231_length_357_cov_8.512712_pilon to pilon.fasta [pilon] Writing NODE_9232_length_357_cov_5.491525:1-357 changes to pilon.changes [pilon] Writing updated NODE_9232_length_357_cov_5.491525_pilon to pilon.fasta [pilon] Writing NODE_9233_length_357_cov_5.322034:1-357 changes to pilon.changes [pilon] Writing updated NODE_9233_length_357_cov_5.322034_pilon to pilon.fasta [pilon] Writing NODE_9234_length_356_cov_57.680851:1-356 changes to pilon.changes [pilon] Writing updated NODE_9234_length_356_cov_57.680851_pilon to pilon.fasta [pilon] Writing NODE_9235_length_356_cov_54.842553:1-356 changes to pilon.changes [pilon] Writing updated NODE_9235_length_356_cov_54.842553_pilon to pilon.fasta [pilon] Writing NODE_9236_length_356_cov_43.995745:1-356 changes to pilon.changes [pilon] Writing updated NODE_9236_length_356_cov_43.995745_pilon to pilon.fasta [pilon] Writing NODE_9237_length_356_cov_42.604255:1-356 changes to pilon.changes [pilon] Writing updated NODE_9237_length_356_cov_42.604255_pilon to pilon.fasta [pilon] Writing NODE_9238_length_356_cov_42.600000:1-356 changes to pilon.changes [pilon] Writing updated NODE_9238_length_356_cov_42.600000_pilon to pilon.fasta [pilon] Writing NODE_9239_length_356_cov_37.927660:1-356 changes to pilon.changes [pilon] Writing updated NODE_9239_length_356_cov_37.927660_pilon to pilon.fasta [pilon] Writing NODE_9240_length_356_cov_31.161702:1-356 changes to pilon.changes [pilon] Writing updated NODE_9240_length_356_cov_31.161702_pilon to pilon.fasta [pilon] Writing NODE_9241_length_356_cov_28.485106:1-356 changes to pilon.changes [pilon] Writing updated NODE_9241_length_356_cov_28.485106_pilon to pilon.fasta [pilon] Writing NODE_9242_length_356_cov_23.876596:1-356 changes to pilon.changes [pilon] Writing updated NODE_9242_length_356_cov_23.876596_pilon to pilon.fasta [pilon] Writing NODE_9243_length_356_cov_23.655319:1-356 changes to pilon.changes [pilon] Writing updated NODE_9243_length_356_cov_23.655319_pilon to pilon.fasta [pilon] Writing NODE_9244_length_356_cov_17.676596:1-356 changes to pilon.changes [pilon] Writing updated NODE_9244_length_356_cov_17.676596_pilon to pilon.fasta [pilon] Writing NODE_9245_length_356_cov_15.029787:1-356 changes to pilon.changes [pilon] Writing updated NODE_9245_length_356_cov_15.029787_pilon to pilon.fasta [pilon] Writing NODE_9246_length_356_cov_14.893617:1-356 changes to pilon.changes [pilon] Writing updated NODE_9246_length_356_cov_14.893617_pilon to pilon.fasta [pilon] Writing NODE_9247_length_356_cov_12.548936:1-356 changes to pilon.changes [pilon] Writing updated NODE_9247_length_356_cov_12.548936_pilon to pilon.fasta [pilon] Writing NODE_9248_length_356_cov_11.795745:1-356 changes to pilon.changes [pilon] Writing updated NODE_9248_length_356_cov_11.795745_pilon to pilon.fasta [pilon] Writing NODE_9249_length_356_cov_11.578723:1-356 changes to pilon.changes [pilon] Writing updated NODE_9249_length_356_cov_11.578723_pilon to pilon.fasta [pilon] Writing NODE_9250_length_356_cov_9.812766:1-356 changes to pilon.changes [pilon] Writing updated NODE_9250_length_356_cov_9.812766_pilon to pilon.fasta [pilon] Writing NODE_9251_length_356_cov_6.417021:1-356 changes to pilon.changes [pilon] Writing updated NODE_9251_length_356_cov_6.417021_pilon to pilon.fasta [pilon] Writing NODE_9252_length_355_cov_65.299145:1-355 changes to pilon.changes [pilon] Writing updated NODE_9252_length_355_cov_65.299145_pilon to pilon.fasta [pilon] Writing NODE_9253_length_355_cov_40.115385:1-355 changes to pilon.changes [pilon] Writing updated NODE_9253_length_355_cov_40.115385_pilon to pilon.fasta [pilon] Writing NODE_9254_length_355_cov_39.000000:1-355 changes to pilon.changes [pilon] Writing updated NODE_9254_length_355_cov_39.000000_pilon to pilon.fasta [pilon] Writing NODE_9255_length_355_cov_23.055556:1-355 changes to pilon.changes [pilon] Writing updated NODE_9255_length_355_cov_23.055556_pilon to pilon.fasta [pilon] Writing NODE_9256_length_355_cov_21.910256:1-355 changes to pilon.changes [pilon] Writing updated NODE_9256_length_355_cov_21.910256_pilon to pilon.fasta [pilon] Writing NODE_9257_length_355_cov_20.957265:1-355 changes to pilon.changes [pilon] Writing updated NODE_9257_length_355_cov_20.957265_pilon to pilon.fasta [pilon] Writing NODE_9258_length_355_cov_20.350427:1-355 changes to pilon.changes [pilon] Writing updated NODE_9258_length_355_cov_20.350427_pilon to pilon.fasta [pilon] Writing NODE_9259_length_355_cov_19.722222:1-355 changes to pilon.changes [pilon] Writing updated NODE_9259_length_355_cov_19.722222_pilon to pilon.fasta [pilon] Writing NODE_9260_length_355_cov_17.346154:1-355 changes to pilon.changes [pilon] Writing updated NODE_9260_length_355_cov_17.346154_pilon to pilon.fasta [pilon] Writing NODE_9261_length_355_cov_16.277778:1-355 changes to pilon.changes [pilon] Writing updated NODE_9261_length_355_cov_16.277778_pilon to pilon.fasta [pilon] Writing NODE_9262_length_355_cov_16.089744:1-355 changes to pilon.changes [pilon] Writing updated NODE_9262_length_355_cov_16.089744_pilon to pilon.fasta [pilon] Writing NODE_9263_length_355_cov_14.970085:1-355 changes to pilon.changes [pilon] Writing updated NODE_9263_length_355_cov_14.970085_pilon to pilon.fasta [pilon] Writing NODE_9264_length_355_cov_12.867521:1-355 changes to pilon.changes [pilon] Writing updated NODE_9264_length_355_cov_12.867521_pilon to pilon.fasta [pilon] Writing NODE_9265_length_355_cov_12.128205:1-355 changes to pilon.changes [pilon] Writing updated NODE_9265_length_355_cov_12.128205_pilon to pilon.fasta [pilon] Writing NODE_9266_length_355_cov_10.636752:1-355 changes to pilon.changes [pilon] Writing updated NODE_9266_length_355_cov_10.636752_pilon to pilon.fasta [pilon] Writing NODE_9267_length_355_cov_10.534188:1-355 changes to pilon.changes [pilon] Writing updated NODE_9267_length_355_cov_10.534188_pilon to pilon.fasta [pilon] Writing NODE_9268_length_355_cov_6.594017:1-355 changes to pilon.changes [pilon] Writing updated NODE_9268_length_355_cov_6.594017_pilon to pilon.fasta [pilon] Writing NODE_9269_length_354_cov_60.261803:1-354 changes to pilon.changes [pilon] Writing updated NODE_9269_length_354_cov_60.261803_pilon to pilon.fasta [pilon] Writing NODE_9270_length_354_cov_41.231760:1-354 changes to pilon.changes [pilon] Writing updated NODE_9270_length_354_cov_41.231760_pilon to pilon.fasta [pilon] Writing NODE_9271_length_354_cov_37.845494:1-354 changes to pilon.changes [pilon] Writing updated NODE_9271_length_354_cov_37.845494_pilon to pilon.fasta [pilon] Writing NODE_9272_length_354_cov_34.287554:1-354 changes to pilon.changes [pilon] Writing updated NODE_9272_length_354_cov_34.287554_pilon to pilon.fasta [pilon] Writing NODE_9273_length_354_cov_32.467811:1-354 changes to pilon.changes [pilon] Writing updated NODE_9273_length_354_cov_32.467811_pilon to pilon.fasta [pilon] Writing NODE_9274_length_354_cov_30.592275:1-354 changes to pilon.changes [pilon] Writing updated NODE_9274_length_354_cov_30.592275_pilon to pilon.fasta [pilon] Writing NODE_9275_length_354_cov_29.918455:1-354 changes to pilon.changes [pilon] Writing updated NODE_9275_length_354_cov_29.918455_pilon to pilon.fasta [pilon] Writing NODE_9276_length_354_cov_29.768240:1-354 changes to pilon.changes [pilon] Writing updated NODE_9276_length_354_cov_29.768240_pilon to pilon.fasta [pilon] Writing NODE_9277_length_354_cov_29.283262:1-354 changes to pilon.changes [pilon] Writing updated NODE_9277_length_354_cov_29.283262_pilon to pilon.fasta [pilon] Writing NODE_9278_length_354_cov_27.407725:1-354 changes to pilon.changes [pilon] Writing updated NODE_9278_length_354_cov_27.407725_pilon to pilon.fasta [pilon] Writing NODE_9279_length_354_cov_27.154506:1-354 changes to pilon.changes [pilon] Writing updated NODE_9279_length_354_cov_27.154506_pilon to pilon.fasta [pilon] Writing NODE_9280_length_354_cov_25.678112:1-354 changes to pilon.changes [pilon] Writing updated NODE_9280_length_354_cov_25.678112_pilon to pilon.fasta [pilon] Writing NODE_9281_length_354_cov_24.283262:1-354 changes to pilon.changes [pilon] Writing updated NODE_9281_length_354_cov_24.283262_pilon to pilon.fasta [pilon] Writing NODE_9282_length_354_cov_22.506438:1-354 changes to pilon.changes [pilon] Writing updated NODE_9282_length_354_cov_22.506438_pilon to pilon.fasta [pilon] Writing NODE_9283_length_354_cov_22.103004:1-354 changes to pilon.changes [pilon] Writing updated NODE_9283_length_354_cov_22.103004_pilon to pilon.fasta [pilon] Writing NODE_9284_length_354_cov_21.738197:1-354 changes to pilon.changes [pilon] Writing updated NODE_9284_length_354_cov_21.738197_pilon to pilon.fasta [pilon] Writing NODE_9285_length_354_cov_20.613734:1-354 changes to pilon.changes [pilon] Writing updated NODE_9285_length_354_cov_20.613734_pilon to pilon.fasta [pilon] Writing NODE_9286_length_354_cov_19.386266:1-354 changes to pilon.changes [pilon] Writing updated NODE_9286_length_354_cov_19.386266_pilon to pilon.fasta [pilon] Writing NODE_9287_length_354_cov_18.596567:1-354 changes to pilon.changes [pilon] Writing updated NODE_9287_length_354_cov_18.596567_pilon to pilon.fasta [pilon] Writing NODE_9288_length_354_cov_18.510730:1-354 changes to pilon.changes [pilon] Writing updated NODE_9288_length_354_cov_18.510730_pilon to pilon.fasta [pilon] Writing NODE_9289_length_354_cov_18.416309:1-354 changes to pilon.changes [pilon] Writing updated NODE_9289_length_354_cov_18.416309_pilon to pilon.fasta [pilon] Writing NODE_9290_length_354_cov_18.218884:1-354 changes to pilon.changes [pilon] Writing updated NODE_9290_length_354_cov_18.218884_pilon to pilon.fasta [pilon] Writing NODE_9291_length_354_cov_18.163090:1-354 changes to pilon.changes [pilon] Writing updated NODE_9291_length_354_cov_18.163090_pilon to pilon.fasta [pilon] Writing NODE_9292_length_354_cov_18.060086:1-354 changes to pilon.changes [pilon] Writing updated NODE_9292_length_354_cov_18.060086_pilon to pilon.fasta [pilon] Writing NODE_9293_length_354_cov_18.051502:1-354 changes to pilon.changes [pilon] Writing updated NODE_9293_length_354_cov_18.051502_pilon to pilon.fasta [pilon] Writing NODE_9294_length_354_cov_17.442060:1-354 changes to pilon.changes [pilon] Writing updated NODE_9294_length_354_cov_17.442060_pilon to pilon.fasta [pilon] Writing NODE_9295_length_354_cov_17.248927:1-354 changes to pilon.changes [pilon] Writing updated NODE_9295_length_354_cov_17.248927_pilon to pilon.fasta [pilon] Writing NODE_9296_length_354_cov_17.201717:1-354 changes to pilon.changes [pilon] Writing updated NODE_9296_length_354_cov_17.201717_pilon to pilon.fasta [pilon] Writing NODE_9297_length_354_cov_16.974249:1-354 changes to pilon.changes [pilon] Writing updated NODE_9297_length_354_cov_16.974249_pilon to pilon.fasta [pilon] Writing NODE_9298_length_354_cov_16.025751:1-354 changes to pilon.changes [pilon] Writing updated NODE_9298_length_354_cov_16.025751_pilon to pilon.fasta [pilon] Writing NODE_9299_length_354_cov_15.793991:1-354 changes to pilon.changes [pilon] Writing updated NODE_9299_length_354_cov_15.793991_pilon to pilon.fasta [pilon] Writing NODE_9300_length_354_cov_15.596567:1-354 changes to pilon.changes [pilon] Writing updated NODE_9300_length_354_cov_15.596567_pilon to pilon.fasta [pilon] Writing NODE_9301_length_354_cov_15.107296:1-354 changes to pilon.changes [pilon] Writing updated NODE_9301_length_354_cov_15.107296_pilon to pilon.fasta [pilon] Writing NODE_9302_length_354_cov_14.995708:1-354 changes to pilon.changes [pilon] Writing updated NODE_9302_length_354_cov_14.995708_pilon to pilon.fasta [pilon] Writing NODE_9303_length_354_cov_14.961373:1-354 changes to pilon.changes [pilon] Writing updated NODE_9303_length_354_cov_14.961373_pilon to pilon.fasta [pilon] Writing NODE_9304_length_354_cov_14.768240:1-354 changes to pilon.changes [pilon] Writing updated NODE_9304_length_354_cov_14.768240_pilon to pilon.fasta [pilon] Writing NODE_9305_length_354_cov_14.188841:1-354 changes to pilon.changes [pilon] Writing updated NODE_9305_length_354_cov_14.188841_pilon to pilon.fasta [pilon] Writing NODE_9306_length_354_cov_14.163090:1-354 changes to pilon.changes [pilon] Writing updated NODE_9306_length_354_cov_14.163090_pilon to pilon.fasta [pilon] Writing NODE_9307_length_354_cov_14.150215:1-354 changes to pilon.changes [pilon] Writing updated NODE_9307_length_354_cov_14.150215_pilon to pilon.fasta [pilon] Writing NODE_9308_length_354_cov_12.570815:1-354 changes to pilon.changes [pilon] Writing updated NODE_9308_length_354_cov_12.570815_pilon to pilon.fasta [pilon] Writing NODE_9309_length_354_cov_12.111588:1-354 changes to pilon.changes [pilon] Writing updated NODE_9309_length_354_cov_12.111588_pilon to pilon.fasta [pilon] Writing NODE_9310_length_354_cov_11.785408:1-354 changes to pilon.changes [pilon] Writing updated NODE_9310_length_354_cov_11.785408_pilon to pilon.fasta [pilon] Writing NODE_9311_length_354_cov_10.206009:1-354 changes to pilon.changes [pilon] Writing updated NODE_9311_length_354_cov_10.206009_pilon to pilon.fasta [pilon] Writing NODE_9312_length_354_cov_9.150215:1-354 changes to pilon.changes [pilon] Writing updated NODE_9312_length_354_cov_9.150215_pilon to pilon.fasta [pilon] Writing NODE_9313_length_354_cov_8.806867:1-354 changes to pilon.changes [pilon] Writing updated NODE_9313_length_354_cov_8.806867_pilon to pilon.fasta [pilon] Writing NODE_9314_length_354_cov_8.433476:1-354 changes to pilon.changes [pilon] Writing updated NODE_9314_length_354_cov_8.433476_pilon to pilon.fasta [pilon] Writing NODE_9315_length_354_cov_8.339056:1-354 changes to pilon.changes [pilon] Writing updated NODE_9315_length_354_cov_8.339056_pilon to pilon.fasta [pilon] Writing NODE_9316_length_354_cov_7.609442:1-354 changes to pilon.changes [pilon] Writing updated NODE_9316_length_354_cov_7.609442_pilon to pilon.fasta [pilon] Writing NODE_9317_length_354_cov_6.824034:1-354 changes to pilon.changes [pilon] Writing updated NODE_9317_length_354_cov_6.824034_pilon to pilon.fasta [pilon] Writing NODE_9318_length_354_cov_5.927039:1-354 changes to pilon.changes [pilon] Writing updated NODE_9318_length_354_cov_5.927039_pilon to pilon.fasta [pilon] Writing NODE_9319_length_354_cov_5.686695:1-354 changes to pilon.changes [pilon] Writing updated NODE_9319_length_354_cov_5.686695_pilon to pilon.fasta [pilon] Writing NODE_9320_length_354_cov_5.283262:1-354 changes to pilon.changes [pilon] Writing updated NODE_9320_length_354_cov_5.283262_pilon to pilon.fasta [pilon] Writing NODE_9321_length_353_cov_63.112069:1-353 changes to pilon.changes [pilon] Writing updated NODE_9321_length_353_cov_63.112069_pilon to pilon.fasta [pilon] Writing NODE_9322_length_353_cov_56.418103:1-353 changes to pilon.changes [pilon] Writing updated NODE_9322_length_353_cov_56.418103_pilon to pilon.fasta [pilon] Writing NODE_9323_length_353_cov_46.349138:1-353 changes to pilon.changes [pilon] Writing updated NODE_9323_length_353_cov_46.349138_pilon to pilon.fasta [pilon] Writing NODE_9324_length_353_cov_42.737069:1-353 changes to pilon.changes [pilon] Writing updated NODE_9324_length_353_cov_42.737069_pilon to pilon.fasta [pilon] Writing NODE_9325_length_353_cov_39.693966:1-353 changes to pilon.changes [pilon] Writing updated NODE_9325_length_353_cov_39.693966_pilon to pilon.fasta [pilon] Writing NODE_9326_length_353_cov_30.193966:1-353 changes to pilon.changes [pilon] Writing updated NODE_9326_length_353_cov_30.193966_pilon to pilon.fasta [pilon] Writing NODE_9327_length_353_cov_28.439655:1-353 changes to pilon.changes [pilon] Writing updated NODE_9327_length_353_cov_28.439655_pilon to pilon.fasta [pilon] Writing NODE_9328_length_353_cov_28.336207:1-353 changes to pilon.changes [pilon] Writing updated NODE_9328_length_353_cov_28.336207_pilon to pilon.fasta [pilon] Writing NODE_9329_length_353_cov_26.228448:1-353 changes to pilon.changes [pilon] Writing updated NODE_9329_length_353_cov_26.228448_pilon to pilon.fasta [pilon] Writing NODE_9330_length_353_cov_23.508621:1-353 changes to pilon.changes [pilon] Writing updated NODE_9330_length_353_cov_23.508621_pilon to pilon.fasta [pilon] Writing NODE_9331_length_353_cov_22.525862:1-353 changes to pilon.changes [pilon] Writing updated NODE_9331_length_353_cov_22.525862_pilon to pilon.fasta [pilon] Writing NODE_9332_length_353_cov_21.590517:1-353 changes to pilon.changes [pilon] Writing updated NODE_9332_length_353_cov_21.590517_pilon to pilon.fasta [pilon] Writing NODE_9333_length_353_cov_20.400862:1-353 changes to pilon.changes [pilon] Writing updated NODE_9333_length_353_cov_20.400862_pilon to pilon.fasta [pilon] Writing NODE_9334_length_353_cov_19.750000:1-353 changes to pilon.changes [pilon] Writing updated NODE_9334_length_353_cov_19.750000_pilon to pilon.fasta [pilon] Writing NODE_9335_length_353_cov_17.814655:1-353 changes to pilon.changes [pilon] Writing updated NODE_9335_length_353_cov_17.814655_pilon to pilon.fasta [pilon] Writing NODE_9336_length_353_cov_15.797414:1-353 changes to pilon.changes [pilon] Writing updated NODE_9336_length_353_cov_15.797414_pilon to pilon.fasta [pilon] Writing NODE_9337_length_353_cov_14.469828:1-353 changes to pilon.changes [pilon] Writing updated NODE_9337_length_353_cov_14.469828_pilon to pilon.fasta [pilon] Writing NODE_9338_length_353_cov_13.353448:1-353 changes to pilon.changes [pilon] Writing updated NODE_9338_length_353_cov_13.353448_pilon to pilon.fasta [pilon] Writing NODE_9339_length_353_cov_9.219828:1-353 changes to pilon.changes [pilon] Writing updated NODE_9339_length_353_cov_9.219828_pilon to pilon.fasta [pilon] Writing NODE_9340_length_353_cov_8.284483:1-353 changes to pilon.changes [pilon] Writing updated NODE_9340_length_353_cov_8.284483_pilon to pilon.fasta [pilon] Writing NODE_9341_length_353_cov_8.159483:1-353 changes to pilon.changes [pilon] Writing updated NODE_9341_length_353_cov_8.159483_pilon to pilon.fasta [pilon] Writing NODE_9342_length_352_cov_29.519481:1-352 changes to pilon.changes [pilon] Writing updated NODE_9342_length_352_cov_29.519481_pilon to pilon.fasta [pilon] Writing NODE_9343_length_352_cov_24.558442:1-352 changes to pilon.changes [pilon] Writing updated NODE_9343_length_352_cov_24.558442_pilon to pilon.fasta [pilon] Writing NODE_9344_length_352_cov_21.995671:1-352 changes to pilon.changes [pilon] Writing updated NODE_9344_length_352_cov_21.995671_pilon to pilon.fasta [pilon] Writing NODE_9345_length_352_cov_20.493506:1-352 changes to pilon.changes [pilon] Writing updated NODE_9345_length_352_cov_20.493506_pilon to pilon.fasta [pilon] Writing NODE_9346_length_352_cov_18.225108:1-352 changes to pilon.changes [pilon] Writing updated NODE_9346_length_352_cov_18.225108_pilon to pilon.fasta [pilon] Writing NODE_9347_length_352_cov_17.619048:1-352 changes to pilon.changes [pilon] Writing updated NODE_9347_length_352_cov_17.619048_pilon to pilon.fasta [pilon] Writing NODE_9348_length_352_cov_15.086580:1-352 changes to pilon.changes [pilon] Writing updated NODE_9348_length_352_cov_15.086580_pilon to pilon.fasta [pilon] Writing NODE_9349_length_352_cov_10.151515:1-352 changes to pilon.changes [pilon] Writing updated NODE_9349_length_352_cov_10.151515_pilon to pilon.fasta [pilon] Writing NODE_9350_length_352_cov_9.220779:1-352 changes to pilon.changes [pilon] Writing updated NODE_9350_length_352_cov_9.220779_pilon to pilon.fasta [pilon] Writing NODE_9351_length_352_cov_8.792208:1-352 changes to pilon.changes [pilon] Writing updated NODE_9351_length_352_cov_8.792208_pilon to pilon.fasta [pilon] Writing NODE_9352_length_352_cov_8.761905:1-352 changes to pilon.changes [pilon] Writing updated NODE_9352_length_352_cov_8.761905_pilon to pilon.fasta [pilon] Writing NODE_9353_length_351_cov_36.869565:1-351 changes to pilon.changes [pilon] Writing updated NODE_9353_length_351_cov_36.869565_pilon to pilon.fasta [pilon] Writing NODE_9354_length_351_cov_34.321739:1-351 changes to pilon.changes [pilon] Writing updated NODE_9354_length_351_cov_34.321739_pilon to pilon.fasta [pilon] Writing NODE_9355_length_351_cov_31.408696:1-351 changes to pilon.changes [pilon] Writing updated NODE_9355_length_351_cov_31.408696_pilon to pilon.fasta [pilon] Writing NODE_9356_length_351_cov_31.104348:1-351 changes to pilon.changes [pilon] Writing updated NODE_9356_length_351_cov_31.104348_pilon to pilon.fasta [pilon] Writing NODE_9357_length_351_cov_29.900000:1-351 changes to pilon.changes [pilon] Writing updated NODE_9357_length_351_cov_29.900000_pilon to pilon.fasta [pilon] Writing NODE_9358_length_351_cov_29.673913:1-351 changes to pilon.changes [pilon] Writing updated NODE_9358_length_351_cov_29.673913_pilon to pilon.fasta [pilon] Writing NODE_9359_length_351_cov_28.234783:1-351 changes to pilon.changes [pilon] Writing updated NODE_9359_length_351_cov_28.234783_pilon to pilon.fasta [pilon] Writing NODE_9360_length_351_cov_26.552174:1-351 changes to pilon.changes [pilon] Writing updated NODE_9360_length_351_cov_26.552174_pilon to pilon.fasta [pilon] Writing NODE_9361_length_351_cov_26.313043:1-351 changes to pilon.changes [pilon] Writing updated NODE_9361_length_351_cov_26.313043_pilon to pilon.fasta [pilon] Writing NODE_9362_length_351_cov_24.617391:1-351 changes to pilon.changes [pilon] Writing updated NODE_9362_length_351_cov_24.617391_pilon to pilon.fasta [pilon] Writing NODE_9363_length_351_cov_24.073913:1-351 changes to pilon.changes [pilon] Writing updated NODE_9363_length_351_cov_24.073913_pilon to pilon.fasta [pilon] Writing NODE_9364_length_351_cov_23.408696:1-351 changes to pilon.changes [pilon] Writing updated NODE_9364_length_351_cov_23.408696_pilon to pilon.fasta [pilon] Writing NODE_9365_length_351_cov_23.395652:1-351 changes to pilon.changes [pilon] Writing updated NODE_9365_length_351_cov_23.395652_pilon to pilon.fasta [pilon] Writing NODE_9366_length_351_cov_22.600000:1-351 changes to pilon.changes [pilon] Writing updated NODE_9366_length_351_cov_22.600000_pilon to pilon.fasta [pilon] Writing NODE_9367_length_351_cov_21.660870:1-351 changes to pilon.changes [pilon] Writing updated NODE_9367_length_351_cov_21.660870_pilon to pilon.fasta [pilon] Writing NODE_9368_length_351_cov_21.026087:1-351 changes to pilon.changes [pilon] Writing updated NODE_9368_length_351_cov_21.026087_pilon to pilon.fasta [pilon] Writing NODE_9369_length_351_cov_20.473913:1-351 changes to pilon.changes [pilon] Writing updated NODE_9369_length_351_cov_20.473913_pilon to pilon.fasta [pilon] Writing NODE_9370_length_351_cov_20.421739:1-351 changes to pilon.changes [pilon] Writing updated NODE_9370_length_351_cov_20.421739_pilon to pilon.fasta [pilon] Writing NODE_9371_length_351_cov_20.091304:1-351 changes to pilon.changes [pilon] Writing updated NODE_9371_length_351_cov_20.091304_pilon to pilon.fasta [pilon] Writing NODE_9372_length_351_cov_19.930435:1-351 changes to pilon.changes [pilon] Writing updated NODE_9372_length_351_cov_19.930435_pilon to pilon.fasta [pilon] Writing NODE_9373_length_351_cov_19.252174:1-351 changes to pilon.changes [pilon] Writing updated NODE_9373_length_351_cov_19.252174_pilon to pilon.fasta [pilon] Writing NODE_9374_length_351_cov_18.691304:1-351 changes to pilon.changes [pilon] Writing updated NODE_9374_length_351_cov_18.691304_pilon to pilon.fasta [pilon] Writing NODE_9375_length_351_cov_18.121739:1-351 changes to pilon.changes [pilon] Writing updated NODE_9375_length_351_cov_18.121739_pilon to pilon.fasta [pilon] Writing NODE_9376_length_351_cov_18.026087:1-351 changes to pilon.changes [pilon] Writing updated NODE_9376_length_351_cov_18.026087_pilon to pilon.fasta [pilon] Writing NODE_9377_length_351_cov_17.930435:1-351 changes to pilon.changes [pilon] Writing updated NODE_9377_length_351_cov_17.930435_pilon to pilon.fasta [pilon] Writing NODE_9378_length_351_cov_17.704348:1-351 changes to pilon.changes [pilon] Writing updated NODE_9378_length_351_cov_17.704348_pilon to pilon.fasta [pilon] Writing NODE_9379_length_351_cov_17.213043:1-351 changes to pilon.changes [pilon] Writing updated NODE_9379_length_351_cov_17.213043_pilon to pilon.fasta [pilon] Writing NODE_9380_length_351_cov_16.482609:1-351 changes to pilon.changes [pilon] Writing updated NODE_9380_length_351_cov_16.482609_pilon to pilon.fasta [pilon] Writing NODE_9381_length_351_cov_15.634783:1-351 changes to pilon.changes [pilon] Writing updated NODE_9381_length_351_cov_15.634783_pilon to pilon.fasta [pilon] Writing NODE_9382_length_351_cov_15.621739:1-351 changes to pilon.changes [pilon] Writing updated NODE_9382_length_351_cov_15.621739_pilon to pilon.fasta [pilon] Writing NODE_9383_length_351_cov_14.860870:1-351 changes to pilon.changes [pilon] Writing updated NODE_9383_length_351_cov_14.860870_pilon to pilon.fasta [pilon] Writing NODE_9384_length_351_cov_14.843478:1-351 changes to pilon.changes [pilon] Writing updated NODE_9384_length_351_cov_14.843478_pilon to pilon.fasta [pilon] Writing NODE_9385_length_351_cov_13.395652:1-351 changes to pilon.changes [pilon] Writing updated NODE_9385_length_351_cov_13.395652_pilon to pilon.fasta [pilon] Writing NODE_9386_length_351_cov_13.313043:1-351 changes to pilon.changes [pilon] Writing updated NODE_9386_length_351_cov_13.313043_pilon to pilon.fasta [pilon] Writing NODE_9387_length_351_cov_12.778261:1-351 changes to pilon.changes [pilon] Writing updated NODE_9387_length_351_cov_12.778261_pilon to pilon.fasta [pilon] Writing NODE_9388_length_351_cov_12.673913:1-351 changes to pilon.changes [pilon] Writing updated NODE_9388_length_351_cov_12.673913_pilon to pilon.fasta [pilon] Writing NODE_9389_length_351_cov_8.808696:1-351 changes to pilon.changes [pilon] Writing updated NODE_9389_length_351_cov_8.808696_pilon to pilon.fasta [pilon] Writing NODE_9390_length_351_cov_8.634783:1-351 changes to pilon.changes [pilon] Writing updated NODE_9390_length_351_cov_8.634783_pilon to pilon.fasta [pilon] Writing NODE_9391_length_351_cov_8.082609:1-351 changes to pilon.changes [pilon] Writing updated NODE_9391_length_351_cov_8.082609_pilon to pilon.fasta [pilon] Writing NODE_9392_length_351_cov_8.047826:1-351 changes to pilon.changes [pilon] Writing updated NODE_9392_length_351_cov_8.047826_pilon to pilon.fasta [pilon] Writing NODE_9393_length_351_cov_7.600000:1-351 changes to pilon.changes [pilon] Writing updated NODE_9393_length_351_cov_7.600000_pilon to pilon.fasta [pilon] Writing NODE_9394_length_351_cov_6.895652:1-351 changes to pilon.changes [pilon] Writing updated NODE_9394_length_351_cov_6.895652_pilon to pilon.fasta [pilon] Writing NODE_9395_length_350_cov_68.803493:1-350 changes to pilon.changes [pilon] Writing updated NODE_9395_length_350_cov_68.803493_pilon to pilon.fasta [pilon] Writing NODE_9396_length_350_cov_60.855895:1-350 changes to pilon.changes [pilon] Writing updated NODE_9396_length_350_cov_60.855895_pilon to pilon.fasta [pilon] Writing NODE_9397_length_350_cov_41.528384:1-350 changes to pilon.changes [pilon] Writing updated NODE_9397_length_350_cov_41.528384_pilon to pilon.fasta [pilon] Writing NODE_9398_length_350_cov_36.724891:1-350 changes to pilon.changes [pilon] Writing updated NODE_9398_length_350_cov_36.724891_pilon to pilon.fasta [pilon] Writing NODE_9399_length_350_cov_30.794760:1-350 changes to pilon.changes [pilon] Writing updated NODE_9399_length_350_cov_30.794760_pilon to pilon.fasta [pilon] Writing NODE_9400_length_350_cov_29.786026:1-350 changes to pilon.changes [pilon] Writing updated NODE_9400_length_350_cov_29.786026_pilon to pilon.fasta [pilon] Writing NODE_9401_length_350_cov_28.720524:1-350 changes to pilon.changes [pilon] Writing updated NODE_9401_length_350_cov_28.720524_pilon to pilon.fasta [pilon] Writing NODE_9402_length_350_cov_25.017467:1-350 changes to pilon.changes [pilon] Writing updated NODE_9402_length_350_cov_25.017467_pilon to pilon.fasta [pilon] Writing NODE_9403_length_350_cov_21.240175:1-350 changes to pilon.changes [pilon] Writing updated NODE_9403_length_350_cov_21.240175_pilon to pilon.fasta [pilon] Writing NODE_9404_length_350_cov_17.807860:1-350 changes to pilon.changes [pilon] Writing updated NODE_9404_length_350_cov_17.807860_pilon to pilon.fasta [pilon] Writing NODE_9405_length_350_cov_17.262009:1-350 changes to pilon.changes [pilon] Writing updated NODE_9405_length_350_cov_17.262009_pilon to pilon.fasta [pilon] Writing NODE_9406_length_350_cov_16.048035:1-350 changes to pilon.changes [pilon] Writing updated NODE_9406_length_350_cov_16.048035_pilon to pilon.fasta [pilon] Writing NODE_9407_length_350_cov_16.021834:1-350 changes to pilon.changes [pilon] Writing updated NODE_9407_length_350_cov_16.021834_pilon to pilon.fasta [pilon] Writing NODE_9408_length_350_cov_12.895197:1-350 changes to pilon.changes [pilon] Writing updated NODE_9408_length_350_cov_12.895197_pilon to pilon.fasta [pilon] Writing NODE_9409_length_350_cov_12.117904:1-350 changes to pilon.changes [pilon] Writing updated NODE_9409_length_350_cov_12.117904_pilon to pilon.fasta [pilon] Writing NODE_9410_length_350_cov_11.895197:1-350 changes to pilon.changes [pilon] Writing updated NODE_9410_length_350_cov_11.895197_pilon to pilon.fasta [pilon] Writing NODE_9411_length_350_cov_10.113537:1-350 changes to pilon.changes [pilon] Writing updated NODE_9411_length_350_cov_10.113537_pilon to pilon.fasta [pilon] Writing NODE_9412_length_350_cov_8.986900:1-350 changes to pilon.changes [pilon] Writing updated NODE_9412_length_350_cov_8.986900_pilon to pilon.fasta [pilon] Writing NODE_9413_length_350_cov_8.580786:1-350 changes to pilon.changes [pilon] Writing updated NODE_9413_length_350_cov_8.580786_pilon to pilon.fasta [pilon] Writing NODE_9414_length_349_cov_56.074561:1-349 changes to pilon.changes [pilon] Writing updated NODE_9414_length_349_cov_56.074561_pilon to pilon.fasta [pilon] Writing NODE_9415_length_349_cov_51.539474:1-349 changes to pilon.changes [pilon] Writing updated NODE_9415_length_349_cov_51.539474_pilon to pilon.fasta [pilon] Writing NODE_9416_length_349_cov_32.350877:1-349 changes to pilon.changes [pilon] Writing updated NODE_9416_length_349_cov_32.350877_pilon to pilon.fasta [pilon] Writing NODE_9417_length_349_cov_29.315789:1-349 changes to pilon.changes [pilon] Writing updated NODE_9417_length_349_cov_29.315789_pilon to pilon.fasta [pilon] Writing NODE_9418_length_349_cov_23.210526:1-349 changes to pilon.changes [pilon] Writing updated NODE_9418_length_349_cov_23.210526_pilon to pilon.fasta [pilon] Writing NODE_9419_length_349_cov_19.605263:1-349 changes to pilon.changes [pilon] Writing updated NODE_9419_length_349_cov_19.605263_pilon to pilon.fasta [pilon] Writing NODE_9420_length_349_cov_13.254386:1-349 changes to pilon.changes [pilon] Writing updated NODE_9420_length_349_cov_13.254386_pilon to pilon.fasta [pilon] Writing NODE_9421_length_349_cov_13.039474:1-349 changes to pilon.changes [pilon] Writing updated NODE_9421_length_349_cov_13.039474_pilon to pilon.fasta [pilon] Writing NODE_9422_length_349_cov_12.697368:1-349 changes to pilon.changes [pilon] Writing updated NODE_9422_length_349_cov_12.697368_pilon to pilon.fasta [pilon] Writing NODE_9423_length_349_cov_11.293860:1-349 changes to pilon.changes [pilon] Writing updated NODE_9423_length_349_cov_11.293860_pilon to pilon.fasta [pilon] Writing NODE_9424_length_349_cov_10.723684:1-349 changes to pilon.changes [pilon] Writing updated NODE_9424_length_349_cov_10.723684_pilon to pilon.fasta [pilon] Writing NODE_9425_length_349_cov_9.587719:1-349 changes to pilon.changes [pilon] Writing updated NODE_9425_length_349_cov_9.587719_pilon to pilon.fasta [pilon] Writing NODE_9426_length_349_cov_1.885965:1-349 changes to pilon.changes [pilon] Writing updated NODE_9426_length_349_cov_1.885965_pilon to pilon.fasta [pilon] Writing NODE_9427_length_348_cov_49.603524:1-348 changes to pilon.changes [pilon] Writing updated NODE_9427_length_348_cov_49.603524_pilon to pilon.fasta [pilon] Writing NODE_9428_length_348_cov_49.030837:1-348 changes to pilon.changes [pilon] Writing updated NODE_9428_length_348_cov_49.030837_pilon to pilon.fasta [pilon] Writing NODE_9429_length_348_cov_33.779736:1-348 changes to pilon.changes [pilon] Writing updated NODE_9429_length_348_cov_33.779736_pilon to pilon.fasta [pilon] Writing NODE_9430_length_348_cov_30.299559:1-348 changes to pilon.changes [pilon] Writing updated NODE_9430_length_348_cov_30.299559_pilon to pilon.fasta [pilon] Writing NODE_9431_length_348_cov_29.383260:1-348 changes to pilon.changes [pilon] Writing updated NODE_9431_length_348_cov_29.383260_pilon to pilon.fasta [pilon] Writing NODE_9432_length_348_cov_28.295154:1-348 changes to pilon.changes [pilon] Writing updated NODE_9432_length_348_cov_28.295154_pilon to pilon.fasta [pilon] Writing NODE_9433_length_348_cov_25.916300:1-348 changes to pilon.changes [pilon] Writing updated NODE_9433_length_348_cov_25.916300_pilon to pilon.fasta [pilon] Writing NODE_9434_length_348_cov_23.167401:1-348 changes to pilon.changes [pilon] Writing updated NODE_9434_length_348_cov_23.167401_pilon to pilon.fasta [pilon] Writing NODE_9435_length_348_cov_22.841410:1-348 changes to pilon.changes [pilon] Writing updated NODE_9435_length_348_cov_22.841410_pilon to pilon.fasta [pilon] Writing NODE_9436_length_348_cov_22.797357:1-348 changes to pilon.changes [pilon] Writing updated NODE_9436_length_348_cov_22.797357_pilon to pilon.fasta [pilon] Writing NODE_9437_length_348_cov_22.361233:1-348 changes to pilon.changes [pilon] Writing updated NODE_9437_length_348_cov_22.361233_pilon to pilon.fasta [pilon] Writing NODE_9438_length_348_cov_21.991189:1-348 changes to pilon.changes [pilon] Writing updated NODE_9438_length_348_cov_21.991189_pilon to pilon.fasta [pilon] Writing NODE_9439_length_348_cov_21.920705:1-348 changes to pilon.changes [pilon] Writing updated NODE_9439_length_348_cov_21.920705_pilon to pilon.fasta [pilon] Writing NODE_9440_length_348_cov_21.784141:1-348 changes to pilon.changes [pilon] Writing updated NODE_9440_length_348_cov_21.784141_pilon to pilon.fasta [pilon] Writing NODE_9441_length_348_cov_20.841410:1-348 changes to pilon.changes [pilon] Writing updated NODE_9441_length_348_cov_20.841410_pilon to pilon.fasta [pilon] Writing NODE_9442_length_348_cov_20.118943:1-348 changes to pilon.changes [pilon] Writing updated NODE_9442_length_348_cov_20.118943_pilon to pilon.fasta [pilon] Writing NODE_9443_length_348_cov_18.431718:1-348 changes to pilon.changes [pilon] Writing updated NODE_9443_length_348_cov_18.431718_pilon to pilon.fasta [pilon] Writing NODE_9444_length_348_cov_18.374449:1-348 changes to pilon.changes [pilon] Writing updated NODE_9444_length_348_cov_18.374449_pilon to pilon.fasta [pilon] Writing NODE_9445_length_348_cov_18.105727:1-348 changes to pilon.changes [pilon] Writing updated NODE_9445_length_348_cov_18.105727_pilon to pilon.fasta [pilon] Writing NODE_9446_length_348_cov_16.863436:1-348 changes to pilon.changes [pilon] Writing updated NODE_9446_length_348_cov_16.863436_pilon to pilon.fasta [pilon] Writing NODE_9447_length_348_cov_16.731278:1-348 changes to pilon.changes [pilon] Writing updated NODE_9447_length_348_cov_16.731278_pilon to pilon.fasta [pilon] Writing NODE_9448_length_348_cov_16.550661:1-348 changes to pilon.changes [pilon] Writing updated NODE_9448_length_348_cov_16.550661_pilon to pilon.fasta [pilon] Writing NODE_9449_length_348_cov_14.762115:1-348 changes to pilon.changes [pilon] Writing updated NODE_9449_length_348_cov_14.762115_pilon to pilon.fasta [pilon] Writing NODE_9450_length_348_cov_13.810573:1-348 changes to pilon.changes [pilon] Writing updated NODE_9450_length_348_cov_13.810573_pilon to pilon.fasta [pilon] Writing NODE_9451_length_348_cov_13.361233:1-348 changes to pilon.changes [pilon] Writing updated NODE_9451_length_348_cov_13.361233_pilon to pilon.fasta [pilon] Writing NODE_9452_length_348_cov_12.550661:1-348 changes to pilon.changes [pilon] Writing updated NODE_9452_length_348_cov_12.550661_pilon to pilon.fasta [pilon] Writing NODE_9453_length_348_cov_12.145374:1-348 changes to pilon.changes [pilon] Writing updated NODE_9453_length_348_cov_12.145374_pilon to pilon.fasta [pilon] Writing NODE_9454_length_348_cov_12.110132:1-348 changes to pilon.changes [pilon] Writing updated NODE_9454_length_348_cov_12.110132_pilon to pilon.fasta [pilon] Writing NODE_9455_length_348_cov_10.920705:1-348 changes to pilon.changes [pilon] Writing updated NODE_9455_length_348_cov_10.920705_pilon to pilon.fasta [pilon] Writing NODE_9456_length_348_cov_10.471366:1-348 changes to pilon.changes [pilon] Writing updated NODE_9456_length_348_cov_10.471366_pilon to pilon.fasta [pilon] Writing NODE_9457_length_348_cov_10.431718:1-348 changes to pilon.changes [pilon] Writing updated NODE_9457_length_348_cov_10.431718_pilon to pilon.fasta [pilon] Writing NODE_9458_length_348_cov_10.189427:1-348 changes to pilon.changes [pilon] Writing updated NODE_9458_length_348_cov_10.189427_pilon to pilon.fasta [pilon] Writing NODE_9459_length_348_cov_9.048458:1-348 changes to pilon.changes [pilon] Writing updated NODE_9459_length_348_cov_9.048458_pilon to pilon.fasta [pilon] Writing NODE_9460_length_348_cov_8.414097:1-348 changes to pilon.changes [pilon] Writing updated NODE_9460_length_348_cov_8.414097_pilon to pilon.fasta [pilon] Writing NODE_9461_length_348_cov_8.123348:1-348 changes to pilon.changes [pilon] Writing updated NODE_9461_length_348_cov_8.123348_pilon to pilon.fasta [pilon] Writing NODE_9462_length_348_cov_7.942731:1-348 changes to pilon.changes [pilon] Writing updated NODE_9462_length_348_cov_7.942731_pilon to pilon.fasta [pilon] Writing NODE_9463_length_348_cov_7.599119:1-348 changes to pilon.changes [pilon] Writing updated NODE_9463_length_348_cov_7.599119_pilon to pilon.fasta [pilon] Writing NODE_9464_length_348_cov_6.484581:1-348 changes to pilon.changes [pilon] Writing updated NODE_9464_length_348_cov_6.484581_pilon to pilon.fasta [pilon] Writing NODE_9465_length_348_cov_5.894273:1-348 changes to pilon.changes [pilon] Writing updated NODE_9465_length_348_cov_5.894273_pilon to pilon.fasta [pilon] Writing NODE_9466_length_348_cov_1.612335:1-348 changes to pilon.changes [pilon] Writing updated NODE_9466_length_348_cov_1.612335_pilon to pilon.fasta [pilon] Writing NODE_9467_length_347_cov_58.451327:1-347 changes to pilon.changes [pilon] Writing updated NODE_9467_length_347_cov_58.451327_pilon to pilon.fasta [pilon] Writing NODE_9468_length_347_cov_33.044248:1-347 changes to pilon.changes [pilon] Writing updated NODE_9468_length_347_cov_33.044248_pilon to pilon.fasta [pilon] Writing NODE_9469_length_347_cov_27.672566:1-347 changes to pilon.changes [pilon] Writing updated NODE_9469_length_347_cov_27.672566_pilon to pilon.fasta [pilon] Writing NODE_9470_length_347_cov_24.030973:1-347 changes to pilon.changes [pilon] Writing updated NODE_9470_length_347_cov_24.030973_pilon to pilon.fasta [pilon] Writing NODE_9471_length_347_cov_22.057522:1-347 changes to pilon.changes [pilon] Writing updated NODE_9471_length_347_cov_22.057522_pilon to pilon.fasta [pilon] Writing NODE_9472_length_347_cov_22.026549:1-347 changes to pilon.changes [pilon] Writing updated NODE_9472_length_347_cov_22.026549_pilon to pilon.fasta [pilon] Writing NODE_9473_length_347_cov_21.530973:1-347 changes to pilon.changes [pilon] Writing updated NODE_9473_length_347_cov_21.530973_pilon to pilon.fasta [pilon] Writing NODE_9474_length_347_cov_18.216814:1-347 changes to pilon.changes [pilon] Writing updated NODE_9474_length_347_cov_18.216814_pilon to pilon.fasta [pilon] Writing NODE_9475_length_347_cov_15.716814:1-347 changes to pilon.changes [pilon] Writing updated NODE_9475_length_347_cov_15.716814_pilon to pilon.fasta [pilon] Writing NODE_9476_length_347_cov_14.004425:1-347 changes to pilon.changes [pilon] Writing updated NODE_9476_length_347_cov_14.004425_pilon to pilon.fasta [pilon] Writing NODE_9477_length_347_cov_10.486726:1-347 changes to pilon.changes [pilon] Writing updated NODE_9477_length_347_cov_10.486726_pilon to pilon.fasta [pilon] Writing NODE_9478_length_347_cov_8.097345:1-347 changes to pilon.changes [pilon] Writing updated NODE_9478_length_347_cov_8.097345_pilon to pilon.fasta [pilon] Writing NODE_9479_length_347_cov_6.960177:1-347 changes to pilon.changes [pilon] Writing updated NODE_9479_length_347_cov_6.960177_pilon to pilon.fasta [pilon] Writing NODE_9480_length_347_cov_6.632743:1-347 changes to pilon.changes [pilon] Writing updated NODE_9480_length_347_cov_6.632743_pilon to pilon.fasta [pilon] Writing NODE_9481_length_347_cov_1.646018:1-347 changes to pilon.changes [pilon] Writing updated NODE_9481_length_347_cov_1.646018_pilon to pilon.fasta [pilon] Writing NODE_9482_length_346_cov_41.600000:1-346 changes to pilon.changes [pilon] Writing updated NODE_9482_length_346_cov_41.600000_pilon to pilon.fasta [pilon] Writing NODE_9483_length_346_cov_29.795556:1-346 changes to pilon.changes [pilon] Writing updated NODE_9483_length_346_cov_29.795556_pilon to pilon.fasta [pilon] Writing NODE_9484_length_346_cov_28.893333:1-346 changes to pilon.changes [pilon] Writing updated NODE_9484_length_346_cov_28.893333_pilon to pilon.fasta [pilon] Writing NODE_9485_length_346_cov_28.222222:1-346 changes to pilon.changes [pilon] Writing updated NODE_9485_length_346_cov_28.222222_pilon to pilon.fasta [pilon] Writing NODE_9486_length_346_cov_15.235556:1-346 changes to pilon.changes [pilon] Writing updated NODE_9486_length_346_cov_15.235556_pilon to pilon.fasta [pilon] Writing NODE_9487_length_346_cov_13.173333:1-346 changes to pilon.changes [pilon] Writing updated NODE_9487_length_346_cov_13.173333_pilon to pilon.fasta [pilon] Writing NODE_9488_length_346_cov_12.671111:1-346 changes to pilon.changes [pilon] Writing updated NODE_9488_length_346_cov_12.671111_pilon to pilon.fasta [pilon] Writing NODE_9489_length_346_cov_11.208889:1-346 changes to pilon.changes [pilon] Writing updated NODE_9489_length_346_cov_11.208889_pilon to pilon.fasta [pilon] Writing NODE_9490_length_346_cov_8.933333:1-346 changes to pilon.changes [pilon] Writing updated NODE_9490_length_346_cov_8.933333_pilon to pilon.fasta [pilon] Writing NODE_9491_length_346_cov_8.457778:1-346 changes to pilon.changes [pilon] Writing updated NODE_9491_length_346_cov_8.457778_pilon to pilon.fasta [pilon] Writing NODE_9492_length_345_cov_66.897321:1-345 changes to pilon.changes [pilon] Writing updated NODE_9492_length_345_cov_66.897321_pilon to pilon.fasta [pilon] Writing NODE_9493_length_345_cov_39.491071:1-345 changes to pilon.changes [pilon] Writing updated NODE_9493_length_345_cov_39.491071_pilon to pilon.fasta [pilon] Writing NODE_9494_length_345_cov_37.669643:1-345 changes to pilon.changes [pilon] Writing updated NODE_9494_length_345_cov_37.669643_pilon to pilon.fasta [pilon] Writing NODE_9495_length_345_cov_36.991071:1-345 changes to pilon.changes [pilon] Writing updated NODE_9495_length_345_cov_36.991071_pilon to pilon.fasta [pilon] Writing NODE_9496_length_345_cov_35.156250:1-345 changes to pilon.changes [pilon] Writing updated NODE_9496_length_345_cov_35.156250_pilon to pilon.fasta [pilon] Writing NODE_9497_length_345_cov_32.424107:1-345 changes to pilon.changes [pilon] Writing updated NODE_9497_length_345_cov_32.424107_pilon to pilon.fasta [pilon] Writing NODE_9498_length_345_cov_31.205357:1-345 changes to pilon.changes [pilon] Writing updated NODE_9498_length_345_cov_31.205357_pilon to pilon.fasta [pilon] Writing NODE_9499_length_345_cov_29.433036:1-345 changes to pilon.changes [pilon] Writing updated NODE_9499_length_345_cov_29.433036_pilon to pilon.fasta [pilon] Writing NODE_9500_length_345_cov_29.379464:1-345 changes to pilon.changes [pilon] Writing updated NODE_9500_length_345_cov_29.379464_pilon to pilon.fasta [pilon] Writing NODE_9501_length_345_cov_29.348214:1-345 changes to pilon.changes [pilon] Writing updated NODE_9501_length_345_cov_29.348214_pilon to pilon.fasta [pilon] Writing NODE_9502_length_345_cov_29.174107:1-345 changes to pilon.changes [pilon] Writing updated NODE_9502_length_345_cov_29.174107_pilon to pilon.fasta [pilon] Writing NODE_9503_length_345_cov_27.513393:1-345 changes to pilon.changes [pilon] Writing updated NODE_9503_length_345_cov_27.513393_pilon to pilon.fasta [pilon] Writing NODE_9504_length_345_cov_27.285714:1-345 changes to pilon.changes [pilon] Writing updated NODE_9504_length_345_cov_27.285714_pilon to pilon.fasta [pilon] Writing NODE_9505_length_345_cov_26.397321:1-345 changes to pilon.changes [pilon] Writing updated NODE_9505_length_345_cov_26.397321_pilon to pilon.fasta [pilon] Writing NODE_9506_length_345_cov_25.334821:1-345 changes to pilon.changes [pilon] Writing updated NODE_9506_length_345_cov_25.334821_pilon to pilon.fasta [pilon] Writing NODE_9507_length_345_cov_22.629464:1-345 changes to pilon.changes [pilon] Writing updated NODE_9507_length_345_cov_22.629464_pilon to pilon.fasta [pilon] Writing NODE_9508_length_345_cov_22.566964:1-345 changes to pilon.changes [pilon] Writing updated NODE_9508_length_345_cov_22.566964_pilon to pilon.fasta [pilon] Writing NODE_9509_length_345_cov_21.821429:1-345 changes to pilon.changes [pilon] Writing updated NODE_9509_length_345_cov_21.821429_pilon to pilon.fasta [pilon] Writing NODE_9510_length_345_cov_21.754464:1-345 changes to pilon.changes [pilon] Writing updated NODE_9510_length_345_cov_21.754464_pilon to pilon.fasta [pilon] Writing NODE_9511_length_345_cov_21.299107:1-345 changes to pilon.changes [pilon] Writing updated NODE_9511_length_345_cov_21.299107_pilon to pilon.fasta [pilon] Writing NODE_9512_length_345_cov_20.486607:1-345 changes to pilon.changes [pilon] Writing updated NODE_9512_length_345_cov_20.486607_pilon to pilon.fasta [pilon] Writing NODE_9513_length_345_cov_20.209821:1-345 changes to pilon.changes [pilon] Writing updated NODE_9513_length_345_cov_20.209821_pilon to pilon.fasta [pilon] Writing NODE_9514_length_345_cov_20.205357:1-345 changes to pilon.changes [pilon] Writing updated NODE_9514_length_345_cov_20.205357_pilon to pilon.fasta [pilon] Writing NODE_9515_length_345_cov_20.169643:1-345 changes to pilon.changes [pilon] Writing updated NODE_9515_length_345_cov_20.169643_pilon to pilon.fasta [pilon] Writing NODE_9516_length_345_cov_19.950893:1-345 changes to pilon.changes [pilon] Writing updated NODE_9516_length_345_cov_19.950893_pilon to pilon.fasta [pilon] Writing NODE_9517_length_345_cov_18.468750:1-345 changes to pilon.changes [pilon] Writing updated NODE_9517_length_345_cov_18.468750_pilon to pilon.fasta [pilon] Writing NODE_9518_length_345_cov_18.450893:1-345 changes to pilon.changes [pilon] Writing updated NODE_9518_length_345_cov_18.450893_pilon to pilon.fasta [pilon] Writing NODE_9519_length_345_cov_17.316964:1-345 changes to pilon.changes [pilon] Writing updated NODE_9519_length_345_cov_17.316964_pilon to pilon.fasta [pilon] Writing NODE_9520_length_345_cov_15.915179:1-345 changes to pilon.changes [pilon] Writing updated NODE_9520_length_345_cov_15.915179_pilon to pilon.fasta [pilon] Writing NODE_9521_length_345_cov_15.535714:1-345 changes to pilon.changes [pilon] Writing updated NODE_9521_length_345_cov_15.535714_pilon to pilon.fasta [pilon] Writing NODE_9522_length_345_cov_15.254464:1-345 changes to pilon.changes [pilon] Writing updated NODE_9522_length_345_cov_15.254464_pilon to pilon.fasta [pilon] Writing NODE_9523_length_345_cov_15.214286:1-345 changes to pilon.changes [pilon] Writing updated NODE_9523_length_345_cov_15.214286_pilon to pilon.fasta [pilon] Writing NODE_9524_length_345_cov_14.616071:1-345 changes to pilon.changes [pilon] Writing updated NODE_9524_length_345_cov_14.616071_pilon to pilon.fasta [pilon] Writing NODE_9525_length_345_cov_14.602679:1-345 changes to pilon.changes [pilon] Writing updated NODE_9525_length_345_cov_14.602679_pilon to pilon.fasta [pilon] Writing NODE_9526_length_345_cov_14.348214:1-345 changes to pilon.changes [pilon] Writing updated NODE_9526_length_345_cov_14.348214_pilon to pilon.fasta [pilon] Writing NODE_9527_length_345_cov_13.598214:1-345 changes to pilon.changes [pilon] Writing updated NODE_9527_length_345_cov_13.598214_pilon to pilon.fasta [pilon] Writing NODE_9528_length_345_cov_13.272321:1-345 changes to pilon.changes [pilon] Writing updated NODE_9528_length_345_cov_13.272321_pilon to pilon.fasta [pilon] Writing NODE_9529_length_345_cov_12.955357:1-345 changes to pilon.changes [pilon] Writing updated NODE_9529_length_345_cov_12.955357_pilon to pilon.fasta [pilon] Writing NODE_9530_length_345_cov_12.745536:1-345 changes to pilon.changes [pilon] Writing updated NODE_9530_length_345_cov_12.745536_pilon to pilon.fasta [pilon] Writing NODE_9531_length_345_cov_12.196429:1-345 changes to pilon.changes [pilon] Writing updated NODE_9531_length_345_cov_12.196429_pilon to pilon.fasta [pilon] Writing NODE_9532_length_345_cov_12.080357:1-345 changes to pilon.changes [pilon] Writing updated NODE_9532_length_345_cov_12.080357_pilon to pilon.fasta [pilon] Writing NODE_9533_length_345_cov_11.941964:1-345 changes to pilon.changes [pilon] Writing updated NODE_9533_length_345_cov_11.941964_pilon to pilon.fasta [pilon] Writing NODE_9534_length_345_cov_11.633929:1-345 changes to pilon.changes [pilon] Writing updated NODE_9534_length_345_cov_11.633929_pilon to pilon.fasta [pilon] Writing NODE_9535_length_345_cov_11.580357:1-345 changes to pilon.changes [pilon] Writing updated NODE_9535_length_345_cov_11.580357_pilon to pilon.fasta [pilon] Writing NODE_9536_length_345_cov_10.758929:1-345 changes to pilon.changes [pilon] Writing updated NODE_9536_length_345_cov_10.758929_pilon to pilon.fasta [pilon] Writing NODE_9537_length_345_cov_10.718750:1-345 changes to pilon.changes [pilon] Writing updated NODE_9537_length_345_cov_10.718750_pilon to pilon.fasta [pilon] Writing NODE_9538_length_345_cov_10.647321:1-345 changes to pilon.changes [pilon] Writing updated NODE_9538_length_345_cov_10.647321_pilon to pilon.fasta [pilon] Writing NODE_9539_length_345_cov_9.486607:1-345 changes to pilon.changes [pilon] Writing updated NODE_9539_length_345_cov_9.486607_pilon to pilon.fasta [pilon] Writing NODE_9540_length_345_cov_7.375000:1-345 changes to pilon.changes [pilon] Writing updated NODE_9540_length_345_cov_7.375000_pilon to pilon.fasta [pilon] Writing NODE_9541_length_345_cov_6.656250:1-345 changes to pilon.changes [pilon] Writing updated NODE_9541_length_345_cov_6.656250_pilon to pilon.fasta [pilon] Writing NODE_9542_length_345_cov_5.888393:1-345 changes to pilon.changes [pilon] Writing updated NODE_9542_length_345_cov_5.888393_pilon to pilon.fasta [pilon] Writing NODE_9543_length_344_cov_54.466368:1-344 changes to pilon.changes [pilon] Writing updated NODE_9543_length_344_cov_54.466368_pilon to pilon.fasta [pilon] Writing NODE_9544_length_344_cov_49.614350:1-344 changes to pilon.changes [pilon] Writing updated NODE_9544_length_344_cov_49.614350_pilon to pilon.fasta [pilon] Writing NODE_9545_length_344_cov_48.766816:1-344 changes to pilon.changes [pilon] Writing updated NODE_9545_length_344_cov_48.766816_pilon to pilon.fasta [pilon] Writing NODE_9546_length_344_cov_43.470852:1-344 changes to pilon.changes [pilon] Writing updated NODE_9546_length_344_cov_43.470852_pilon to pilon.fasta [pilon] Writing NODE_9547_length_344_cov_33.538117:1-344 changes to pilon.changes [pilon] Writing updated NODE_9547_length_344_cov_33.538117_pilon to pilon.fasta [pilon] Writing NODE_9548_length_344_cov_26.910314:1-344 changes to pilon.changes [pilon] Writing updated NODE_9548_length_344_cov_26.910314_pilon to pilon.fasta [pilon] Writing NODE_9549_length_344_cov_24.170404:1-344 changes to pilon.changes [pilon] Writing updated NODE_9549_length_344_cov_24.170404_pilon to pilon.fasta [pilon] Writing NODE_9550_length_344_cov_24.130045:1-344 changes to pilon.changes [pilon] Writing updated NODE_9550_length_344_cov_24.130045_pilon to pilon.fasta [pilon] Writing NODE_9551_length_344_cov_14.820628:1-344 changes to pilon.changes [pilon] Writing updated NODE_9551_length_344_cov_14.820628_pilon to pilon.fasta [pilon] Writing NODE_9552_length_344_cov_13.941704:1-344 changes to pilon.changes [pilon] Writing updated NODE_9552_length_344_cov_13.941704_pilon to pilon.fasta [pilon] Writing NODE_9553_length_344_cov_13.264574:1-344 changes to pilon.changes [pilon] Writing updated NODE_9553_length_344_cov_13.264574_pilon to pilon.fasta [pilon] Writing NODE_9554_length_344_cov_13.197309:1-344 changes to pilon.changes [pilon] Writing updated NODE_9554_length_344_cov_13.197309_pilon to pilon.fasta [pilon] Writing NODE_9555_length_344_cov_12.748879:1-344 changes to pilon.changes [pilon] Writing updated NODE_9555_length_344_cov_12.748879_pilon to pilon.fasta [pilon] Writing NODE_9556_length_344_cov_10.026906:1-344 changes to pilon.changes [pilon] Writing updated NODE_9556_length_344_cov_10.026906_pilon to pilon.fasta [pilon] Writing NODE_9557_length_344_cov_8.591928:1-344 changes to pilon.changes [pilon] Writing updated NODE_9557_length_344_cov_8.591928_pilon to pilon.fasta [pilon] Writing NODE_9558_length_344_cov_4.798206:1-344 changes to pilon.changes [pilon] Writing updated NODE_9558_length_344_cov_4.798206_pilon to pilon.fasta [pilon] Writing NODE_9559_length_343_cov_51.720721:1-343 changes to pilon.changes [pilon] Writing updated NODE_9559_length_343_cov_51.720721_pilon to pilon.fasta [pilon] Writing NODE_9560_length_343_cov_19.396396:1-343 changes to pilon.changes [pilon] Writing updated NODE_9560_length_343_cov_19.396396_pilon to pilon.fasta [pilon] Writing NODE_9561_length_343_cov_19.162162:1-343 changes to pilon.changes [pilon] Writing updated NODE_9561_length_343_cov_19.162162_pilon to pilon.fasta [pilon] Writing NODE_9562_length_343_cov_16.135135:1-343 changes to pilon.changes [pilon] Writing updated NODE_9562_length_343_cov_16.135135_pilon to pilon.fasta [pilon] Writing NODE_9563_length_343_cov_13.031532:1-343 changes to pilon.changes [pilon] Writing updated NODE_9563_length_343_cov_13.031532_pilon to pilon.fasta [pilon] Writing NODE_9564_length_343_cov_12.873874:1-343 changes to pilon.changes [pilon] Writing updated NODE_9564_length_343_cov_12.873874_pilon to pilon.fasta [pilon] Writing NODE_9565_length_343_cov_12.184685:1-343 changes to pilon.changes [pilon] Writing updated NODE_9565_length_343_cov_12.184685_pilon to pilon.fasta [pilon] Writing NODE_9566_length_343_cov_11.963964:1-343 changes to pilon.changes [pilon] Writing updated NODE_9566_length_343_cov_11.963964_pilon to pilon.fasta [pilon] Writing NODE_9567_length_343_cov_8.135135:1-343 changes to pilon.changes [pilon] Writing updated NODE_9567_length_343_cov_8.135135_pilon to pilon.fasta [pilon] Writing NODE_9568_length_342_cov_32.506787:1-342 changes to pilon.changes [pilon] Writing updated NODE_9568_length_342_cov_32.506787_pilon to pilon.fasta [pilon] Writing NODE_9569_length_342_cov_32.321267:1-342 changes to pilon.changes [pilon] Writing updated NODE_9569_length_342_cov_32.321267_pilon to pilon.fasta [pilon] Writing NODE_9570_length_342_cov_30.511312:1-342 changes to pilon.changes [pilon] Writing updated NODE_9570_length_342_cov_30.511312_pilon to pilon.fasta [pilon] Writing NODE_9571_length_342_cov_30.312217:1-342 changes to pilon.changes [pilon] Writing updated NODE_9571_length_342_cov_30.312217_pilon to pilon.fasta [pilon] Writing NODE_9572_length_342_cov_29.542986:1-342 changes to pilon.changes [pilon] Writing updated NODE_9572_length_342_cov_29.542986_pilon to pilon.fasta [pilon] Writing NODE_9573_length_342_cov_28.389140:1-342 changes to pilon.changes [pilon] Writing updated NODE_9573_length_342_cov_28.389140_pilon to pilon.fasta [pilon] Writing NODE_9574_length_342_cov_27.859729:1-342 changes to pilon.changes [pilon] Writing updated NODE_9574_length_342_cov_27.859729_pilon to pilon.fasta [pilon] Writing NODE_9575_length_342_cov_26.746606:1-342 changes to pilon.changes [pilon] Writing updated NODE_9575_length_342_cov_26.746606_pilon to pilon.fasta [pilon] Writing NODE_9576_length_342_cov_25.809955:1-342 changes to pilon.changes [pilon] Writing updated NODE_9576_length_342_cov_25.809955_pilon to pilon.fasta [pilon] Writing NODE_9577_length_342_cov_25.031674:1-342 changes to pilon.changes [pilon] Writing updated NODE_9577_length_342_cov_25.031674_pilon to pilon.fasta [pilon] Writing NODE_9578_length_342_cov_24.574661:1-342 changes to pilon.changes [pilon] Writing updated NODE_9578_length_342_cov_24.574661_pilon to pilon.fasta [pilon] Writing NODE_9579_length_342_cov_24.398190:1-342 changes to pilon.changes [pilon] Writing updated NODE_9579_length_342_cov_24.398190_pilon to pilon.fasta [pilon] Writing NODE_9580_length_342_cov_23.986425:1-342 changes to pilon.changes [pilon] Writing updated NODE_9580_length_342_cov_23.986425_pilon to pilon.fasta [pilon] Writing NODE_9581_length_342_cov_23.533937:1-342 changes to pilon.changes [pilon] Writing updated NODE_9581_length_342_cov_23.533937_pilon to pilon.fasta [pilon] Writing NODE_9582_length_342_cov_23.389140:1-342 changes to pilon.changes [pilon] Writing updated NODE_9582_length_342_cov_23.389140_pilon to pilon.fasta [pilon] Writing NODE_9583_length_342_cov_23.076923:1-342 changes to pilon.changes [pilon] Writing updated NODE_9583_length_342_cov_23.076923_pilon to pilon.fasta [pilon] Writing NODE_9584_length_342_cov_22.171946:1-342 changes to pilon.changes [pilon] Writing updated NODE_9584_length_342_cov_22.171946_pilon to pilon.fasta [pilon] Writing NODE_9585_length_342_cov_20.466063:1-342 changes to pilon.changes [pilon] Writing updated NODE_9585_length_342_cov_20.466063_pilon to pilon.fasta [pilon] Writing NODE_9586_length_342_cov_20.063348:1-342 changes to pilon.changes [pilon] Writing updated NODE_9586_length_342_cov_20.063348_pilon to pilon.fasta [pilon] Writing NODE_9587_length_342_cov_19.791855:1-342 changes to pilon.changes [pilon] Writing updated NODE_9587_length_342_cov_19.791855_pilon to pilon.fasta [pilon] Writing NODE_9588_length_342_cov_19.457014:1-342 changes to pilon.changes [pilon] Writing updated NODE_9588_length_342_cov_19.457014_pilon to pilon.fasta [pilon] Writing NODE_9589_length_342_cov_18.049774:1-342 changes to pilon.changes [pilon] Writing updated NODE_9589_length_342_cov_18.049774_pilon to pilon.fasta [pilon] Writing NODE_9590_length_342_cov_17.244344:1-342 changes to pilon.changes [pilon] Writing updated NODE_9590_length_342_cov_17.244344_pilon to pilon.fasta [pilon] Writing NODE_9591_length_342_cov_15.692308:1-342 changes to pilon.changes [pilon] Writing updated NODE_9591_length_342_cov_15.692308_pilon to pilon.fasta [pilon] Writing NODE_9592_length_342_cov_15.588235:1-342 changes to pilon.changes [pilon] Writing updated NODE_9592_length_342_cov_15.588235_pilon to pilon.fasta [pilon] Writing NODE_9593_length_342_cov_15.248869:1-342 changes to pilon.changes [pilon] Writing updated NODE_9593_length_342_cov_15.248869_pilon to pilon.fasta [pilon] Writing NODE_9594_length_342_cov_14.809955:1-342 changes to pilon.changes [pilon] Writing updated NODE_9594_length_342_cov_14.809955_pilon to pilon.fasta [pilon] Writing NODE_9595_length_342_cov_14.339367:1-342 changes to pilon.changes [pilon] Writing updated NODE_9595_length_342_cov_14.339367_pilon to pilon.fasta [pilon] Writing NODE_9596_length_342_cov_14.131222:1-342 changes to pilon.changes [pilon] Writing updated NODE_9596_length_342_cov_14.131222_pilon to pilon.fasta [pilon] Writing NODE_9597_length_342_cov_13.597285:1-342 changes to pilon.changes [pilon] Writing updated NODE_9597_length_342_cov_13.597285_pilon to pilon.fasta [pilon] Writing NODE_9598_length_342_cov_13.325792:1-342 changes to pilon.changes [pilon] Writing updated NODE_9598_length_342_cov_13.325792_pilon to pilon.fasta [pilon] Writing NODE_9599_length_342_cov_13.239819:1-342 changes to pilon.changes [pilon] Writing updated NODE_9599_length_342_cov_13.239819_pilon to pilon.fasta [pilon] Writing NODE_9600_length_342_cov_13.149321:1-342 changes to pilon.changes [pilon] Writing updated NODE_9600_length_342_cov_13.149321_pilon to pilon.fasta [pilon] Writing NODE_9601_length_342_cov_11.932127:1-342 changes to pilon.changes [pilon] Writing updated NODE_9601_length_342_cov_11.932127_pilon to pilon.fasta [pilon] Writing NODE_9602_length_342_cov_11.411765:1-342 changes to pilon.changes [pilon] Writing updated NODE_9602_length_342_cov_11.411765_pilon to pilon.fasta [pilon] Writing NODE_9603_length_342_cov_10.859729:1-342 changes to pilon.changes [pilon] Writing updated NODE_9603_length_342_cov_10.859729_pilon to pilon.fasta [pilon] Writing NODE_9604_length_342_cov_9.782805:1-342 changes to pilon.changes [pilon] Writing updated NODE_9604_length_342_cov_9.782805_pilon to pilon.fasta [pilon] Writing NODE_9605_length_342_cov_9.656109:1-342 changes to pilon.changes [pilon] Writing updated NODE_9605_length_342_cov_9.656109_pilon to pilon.fasta [pilon] Writing NODE_9606_length_342_cov_8.855204:1-342 changes to pilon.changes [pilon] Writing updated NODE_9606_length_342_cov_8.855204_pilon to pilon.fasta [pilon] Writing NODE_9607_length_342_cov_8.144796:1-342 changes to pilon.changes [pilon] Writing updated NODE_9607_length_342_cov_8.144796_pilon to pilon.fasta [pilon] Writing NODE_9608_length_342_cov_6.556561:1-342 changes to pilon.changes [pilon] Writing updated NODE_9608_length_342_cov_6.556561_pilon to pilon.fasta [pilon] Writing NODE_9609_length_342_cov_5.524887:1-342 changes to pilon.changes [pilon] Writing updated NODE_9609_length_342_cov_5.524887_pilon to pilon.fasta [pilon] Writing NODE_9610_length_341_cov_75.368182:1-341 changes to pilon.changes [pilon] Writing updated NODE_9610_length_341_cov_75.368182_pilon to pilon.fasta [pilon] Writing NODE_9611_length_341_cov_56.568182:1-341 changes to pilon.changes [pilon] Writing updated NODE_9611_length_341_cov_56.568182_pilon to pilon.fasta [pilon] Writing NODE_9612_length_341_cov_56.104545:1-341 changes to pilon.changes [pilon] Writing updated NODE_9612_length_341_cov_56.104545_pilon to pilon.fasta [pilon] Writing NODE_9613_length_341_cov_54.972727:1-341 changes to pilon.changes [pilon] Writing updated NODE_9613_length_341_cov_54.972727_pilon to pilon.fasta [pilon] Writing NODE_9614_length_341_cov_50.431818:1-341 changes to pilon.changes [pilon] Writing updated NODE_9614_length_341_cov_50.431818_pilon to pilon.fasta [pilon] Writing NODE_9615_length_341_cov_43.504545:1-341 changes to pilon.changes [pilon] Writing updated NODE_9615_length_341_cov_43.504545_pilon to pilon.fasta [pilon] Writing NODE_9616_length_341_cov_38.922727:1-341 changes to pilon.changes [pilon] Writing updated NODE_9616_length_341_cov_38.922727_pilon to pilon.fasta [pilon] Writing NODE_9617_length_341_cov_38.754545:1-341 changes to pilon.changes [pilon] Writing updated NODE_9617_length_341_cov_38.754545_pilon to pilon.fasta [pilon] Writing NODE_9618_length_341_cov_29.740909:1-341 changes to pilon.changes [pilon] Writing updated NODE_9618_length_341_cov_29.740909_pilon to pilon.fasta [pilon] Writing NODE_9619_length_341_cov_23.400000:1-341 changes to pilon.changes [pilon] Writing updated NODE_9619_length_341_cov_23.400000_pilon to pilon.fasta [pilon] Writing NODE_9620_length_341_cov_17.436364:1-341 changes to pilon.changes [pilon] Writing updated NODE_9620_length_341_cov_17.436364_pilon to pilon.fasta [pilon] Writing NODE_9621_length_341_cov_14.831818:1-341 changes to pilon.changes [pilon] Writing updated NODE_9621_length_341_cov_14.831818_pilon to pilon.fasta [pilon] Writing NODE_9622_length_341_cov_11.690909:1-341 changes to pilon.changes [pilon] Writing updated NODE_9622_length_341_cov_11.690909_pilon to pilon.fasta [pilon] Writing NODE_9623_length_341_cov_5.572727:1-341 changes to pilon.changes [pilon] Writing updated NODE_9623_length_341_cov_5.572727_pilon to pilon.fasta [pilon] Writing NODE_9624_length_340_cov_66.164384:1-340 changes to pilon.changes [pilon] Writing updated NODE_9624_length_340_cov_66.164384_pilon to pilon.fasta [pilon] Writing NODE_9625_length_340_cov_39.223744:1-340 changes to pilon.changes [pilon] Writing updated NODE_9625_length_340_cov_39.223744_pilon to pilon.fasta [pilon] Writing NODE_9626_length_340_cov_38.616438:1-340 changes to pilon.changes [pilon] Writing updated NODE_9626_length_340_cov_38.616438_pilon to pilon.fasta [pilon] Writing NODE_9627_length_340_cov_37.132420:1-340 changes to pilon.changes [pilon] Writing updated NODE_9627_length_340_cov_37.132420_pilon to pilon.fasta [pilon] Writing NODE_9628_length_340_cov_33.351598:1-340 changes to pilon.changes [pilon] Writing updated NODE_9628_length_340_cov_33.351598_pilon to pilon.fasta [pilon] Writing NODE_9629_length_340_cov_29.684932:1-340 changes to pilon.changes [pilon] Writing updated NODE_9629_length_340_cov_29.684932_pilon to pilon.fasta [pilon] Writing NODE_9630_length_340_cov_27.561644:1-340 changes to pilon.changes [pilon] Writing updated NODE_9630_length_340_cov_27.561644_pilon to pilon.fasta [pilon] Writing NODE_9631_length_340_cov_21.095890:1-340 changes to pilon.changes [pilon] Writing updated NODE_9631_length_340_cov_21.095890_pilon to pilon.fasta [pilon] Writing NODE_9632_length_340_cov_16.552511:1-340 changes to pilon.changes [pilon] Writing updated NODE_9632_length_340_cov_16.552511_pilon to pilon.fasta [pilon] Writing NODE_9633_length_340_cov_13.251142:1-340 changes to pilon.changes [pilon] Writing updated NODE_9633_length_340_cov_13.251142_pilon to pilon.fasta [pilon] Writing NODE_9634_length_340_cov_11.986301:1-340 changes to pilon.changes [pilon] Writing updated NODE_9634_length_340_cov_11.986301_pilon to pilon.fasta [pilon] Writing NODE_9635_length_340_cov_10.123288:1-340 changes to pilon.changes [pilon] Writing updated NODE_9635_length_340_cov_10.123288_pilon to pilon.fasta [pilon] Writing NODE_9636_length_340_cov_9.319635:1-340 changes to pilon.changes [pilon] Writing updated NODE_9636_length_340_cov_9.319635_pilon to pilon.fasta [pilon] Writing NODE_9637_length_340_cov_7.721461:1-340 changes to pilon.changes [pilon] Writing updated NODE_9637_length_340_cov_7.721461_pilon to pilon.fasta [pilon] Writing NODE_9638_length_339_cov_68.660550:1-339 changes to pilon.changes [pilon] Writing updated NODE_9638_length_339_cov_68.660550_pilon to pilon.fasta [pilon] Writing NODE_9639_length_339_cov_58.550459:1-339 changes to pilon.changes [pilon] Writing updated NODE_9639_length_339_cov_58.550459_pilon to pilon.fasta [pilon] Writing NODE_9640_length_339_cov_44.683486:1-339 changes to pilon.changes [pilon] Writing updated NODE_9640_length_339_cov_44.683486_pilon to pilon.fasta [pilon] Writing NODE_9641_length_339_cov_44.665138:1-339 changes to pilon.changes [pilon] Writing updated NODE_9641_length_339_cov_44.665138_pilon to pilon.fasta [pilon] Writing NODE_9642_length_339_cov_34.192661:1-339 changes to pilon.changes [pilon] Writing updated NODE_9642_length_339_cov_34.192661_pilon to pilon.fasta [pilon] Writing NODE_9643_length_339_cov_30.720183:1-339 changes to pilon.changes [pilon] Writing updated NODE_9643_length_339_cov_30.720183_pilon to pilon.fasta [pilon] Writing NODE_9644_length_339_cov_28.871560:1-339 changes to pilon.changes [pilon] Writing updated NODE_9644_length_339_cov_28.871560_pilon to pilon.fasta [pilon] Writing NODE_9645_length_339_cov_28.155963:1-339 changes to pilon.changes [pilon] Writing updated NODE_9645_length_339_cov_28.155963_pilon to pilon.fasta [pilon] Writing NODE_9646_length_339_cov_27.004587:1-339 changes to pilon.changes [pilon] Writing updated NODE_9646_length_339_cov_27.004587_pilon to pilon.fasta [pilon] Writing NODE_9647_length_339_cov_25.940367:1-339 changes to pilon.changes [pilon] Writing updated NODE_9647_length_339_cov_25.940367_pilon to pilon.fasta [pilon] Writing NODE_9648_length_339_cov_25.623853:1-339 changes to pilon.changes [pilon] Writing updated NODE_9648_length_339_cov_25.623853_pilon to pilon.fasta [pilon] Writing NODE_9649_length_339_cov_24.674312:1-339 changes to pilon.changes [pilon] Writing updated NODE_9649_length_339_cov_24.674312_pilon to pilon.fasta [pilon] Writing NODE_9650_length_339_cov_24.545872:1-339 changes to pilon.changes [pilon] Writing updated NODE_9650_length_339_cov_24.545872_pilon to pilon.fasta [pilon] Writing NODE_9651_length_339_cov_24.477064:1-339 changes to pilon.changes [pilon] Writing updated NODE_9651_length_339_cov_24.477064_pilon to pilon.fasta [pilon] Writing NODE_9652_length_339_cov_24.169725:1-339 changes to pilon.changes [pilon] Writing updated NODE_9652_length_339_cov_24.169725_pilon to pilon.fasta [pilon] Writing NODE_9653_length_339_cov_23.142202:1-339 changes to pilon.changes [pilon] Writing updated NODE_9653_length_339_cov_23.142202_pilon to pilon.fasta [pilon] Writing NODE_9654_length_339_cov_23.128440:1-339 changes to pilon.changes [pilon] Writing updated NODE_9654_length_339_cov_23.128440_pilon to pilon.fasta [pilon] Writing NODE_9655_length_339_cov_21.614679:1-339 changes to pilon.changes [pilon] Writing updated NODE_9655_length_339_cov_21.614679_pilon to pilon.fasta [pilon] Writing NODE_9656_length_339_cov_21.564220:1-339 changes to pilon.changes [pilon] Writing updated NODE_9656_length_339_cov_21.564220_pilon to pilon.fasta [pilon] Writing NODE_9657_length_339_cov_20.830275:1-339 changes to pilon.changes [pilon] Writing updated NODE_9657_length_339_cov_20.830275_pilon to pilon.fasta [pilon] Writing NODE_9658_length_339_cov_20.564220:1-339 changes to pilon.changes [pilon] Writing updated NODE_9658_length_339_cov_20.564220_pilon to pilon.fasta [pilon] Writing NODE_9659_length_339_cov_19.495413:1-339 changes to pilon.changes [pilon] Writing updated NODE_9659_length_339_cov_19.495413_pilon to pilon.fasta [pilon] Writing NODE_9660_length_339_cov_19.403670:1-339 changes to pilon.changes [pilon] Writing updated NODE_9660_length_339_cov_19.403670_pilon to pilon.fasta [pilon] Writing NODE_9661_length_339_cov_17.256881:1-339 changes to pilon.changes [pilon] Writing updated NODE_9661_length_339_cov_17.256881_pilon to pilon.fasta [pilon] Writing NODE_9662_length_339_cov_17.151376:1-339 changes to pilon.changes [pilon] Writing updated NODE_9662_length_339_cov_17.151376_pilon to pilon.fasta [pilon] Writing NODE_9663_length_339_cov_17.137615:1-339 changes to pilon.changes [pilon] Writing updated NODE_9663_length_339_cov_17.137615_pilon to pilon.fasta [pilon] Writing NODE_9664_length_339_cov_16.605505:1-339 changes to pilon.changes [pilon] Writing updated NODE_9664_length_339_cov_16.605505_pilon to pilon.fasta [pilon] Writing NODE_9665_length_339_cov_16.458716:1-339 changes to pilon.changes [pilon] Writing updated NODE_9665_length_339_cov_16.458716_pilon to pilon.fasta [pilon] Writing NODE_9666_length_339_cov_16.270642:1-339 changes to pilon.changes [pilon] Writing updated NODE_9666_length_339_cov_16.270642_pilon to pilon.fasta [pilon] Writing NODE_9667_length_339_cov_16.036697:1-339 changes to pilon.changes [pilon] Writing updated NODE_9667_length_339_cov_16.036697_pilon to pilon.fasta [pilon] Writing NODE_9668_length_339_cov_15.500000:1-339 changes to pilon.changes [pilon] Writing updated NODE_9668_length_339_cov_15.500000_pilon to pilon.fasta [pilon] Writing NODE_9669_length_339_cov_15.435780:1-339 changes to pilon.changes [pilon] Writing updated NODE_9669_length_339_cov_15.435780_pilon to pilon.fasta [pilon] Writing NODE_9670_length_339_cov_15.018349:1-339 changes to pilon.changes [pilon] Writing updated NODE_9670_length_339_cov_15.018349_pilon to pilon.fasta [pilon] Writing NODE_9671_length_339_cov_14.825688:1-339 changes to pilon.changes [pilon] Writing updated NODE_9671_length_339_cov_14.825688_pilon to pilon.fasta [pilon] Writing NODE_9672_length_339_cov_14.573394:1-339 changes to pilon.changes [pilon] Writing updated NODE_9672_length_339_cov_14.573394_pilon to pilon.fasta [pilon] Writing NODE_9673_length_339_cov_13.949541:1-339 changes to pilon.changes [pilon] Writing updated NODE_9673_length_339_cov_13.949541_pilon to pilon.fasta [pilon] Writing NODE_9674_length_339_cov_13.880734:1-339 changes to pilon.changes [pilon] Writing updated NODE_9674_length_339_cov_13.880734_pilon to pilon.fasta [pilon] Writing NODE_9675_length_339_cov_13.729358:1-339 changes to pilon.changes [pilon] Writing updated NODE_9675_length_339_cov_13.729358_pilon to pilon.fasta [pilon] Writing NODE_9676_length_339_cov_13.362385:1-339 changes to pilon.changes [pilon] Writing updated NODE_9676_length_339_cov_13.362385_pilon to pilon.fasta [pilon] Writing NODE_9677_length_339_cov_13.119266:1-339 changes to pilon.changes [pilon] Writing updated NODE_9677_length_339_cov_13.119266_pilon to pilon.fasta [pilon] Writing NODE_9678_length_339_cov_12.366972:1-339 changes to pilon.changes [pilon] Writing updated NODE_9678_length_339_cov_12.366972_pilon to pilon.fasta [pilon] Writing NODE_9679_length_339_cov_12.316514:1-339 changes to pilon.changes [pilon] Writing updated NODE_9679_length_339_cov_12.316514_pilon to pilon.fasta [pilon] Writing NODE_9680_length_339_cov_12.302752:1-339 changes to pilon.changes [pilon] Writing updated NODE_9680_length_339_cov_12.302752_pilon to pilon.fasta [pilon] Writing NODE_9681_length_339_cov_11.197248:1-339 changes to pilon.changes [pilon] Writing updated NODE_9681_length_339_cov_11.197248_pilon to pilon.fasta [pilon] Writing NODE_9682_length_339_cov_10.967890:1-339 changes to pilon.changes [pilon] Writing updated NODE_9682_length_339_cov_10.967890_pilon to pilon.fasta [pilon] Writing NODE_9683_length_339_cov_10.944954:1-339 changes to pilon.changes [pilon] Writing updated NODE_9683_length_339_cov_10.944954_pilon to pilon.fasta [pilon] Writing NODE_9684_length_339_cov_10.899083:1-339 changes to pilon.changes [pilon] Writing updated NODE_9684_length_339_cov_10.899083_pilon to pilon.fasta [pilon] Writing NODE_9685_length_339_cov_10.366972:1-339 changes to pilon.changes [pilon] Writing updated NODE_9685_length_339_cov_10.366972_pilon to pilon.fasta [pilon] Writing NODE_9686_length_339_cov_9.807339:1-339 changes to pilon.changes [pilon] Writing updated NODE_9686_length_339_cov_9.807339_pilon to pilon.fasta [pilon] Writing NODE_9687_length_339_cov_8.857798:1-339 changes to pilon.changes [pilon] Writing updated NODE_9687_length_339_cov_8.857798_pilon to pilon.fasta [pilon] Writing NODE_9688_length_339_cov_8.811927:1-339 changes to pilon.changes [pilon] Writing updated NODE_9688_length_339_cov_8.811927_pilon to pilon.fasta [pilon] Writing NODE_9689_length_339_cov_8.555046:1-339 changes to pilon.changes [pilon] Writing updated NODE_9689_length_339_cov_8.555046_pilon to pilon.fasta [pilon] Writing NODE_9690_length_339_cov_8.366972:1-339 changes to pilon.changes [pilon] Writing updated NODE_9690_length_339_cov_8.366972_pilon to pilon.fasta [pilon] Writing NODE_9691_length_339_cov_7.197248:1-339 changes to pilon.changes [pilon] Writing updated NODE_9691_length_339_cov_7.197248_pilon to pilon.fasta [pilon] Writing NODE_9692_length_339_cov_6.325688:1-339 changes to pilon.changes [pilon] Writing updated NODE_9692_length_339_cov_6.325688_pilon to pilon.fasta [pilon] Writing NODE_9693_length_339_cov_6.100917:1-339 changes to pilon.changes [pilon] Writing updated NODE_9693_length_339_cov_6.100917_pilon to pilon.fasta [pilon] Writing NODE_9694_length_339_cov_5.821101:1-339 changes to pilon.changes [pilon] Writing updated NODE_9694_length_339_cov_5.821101_pilon to pilon.fasta [pilon] Writing NODE_9695_length_338_cov_50.138249:1-338 changes to pilon.changes [pilon] Writing updated NODE_9695_length_338_cov_50.138249_pilon to pilon.fasta [pilon] Writing NODE_9696_length_338_cov_44.695853:1-338 changes to pilon.changes [pilon] Writing updated NODE_9696_length_338_cov_44.695853_pilon to pilon.fasta [pilon] Writing NODE_9697_length_338_cov_33.119816:1-338 changes to pilon.changes [pilon] Writing updated NODE_9697_length_338_cov_33.119816_pilon to pilon.fasta [pilon] Writing NODE_9698_length_338_cov_31.299539:1-338 changes to pilon.changes [pilon] Writing updated NODE_9698_length_338_cov_31.299539_pilon to pilon.fasta [pilon] Writing NODE_9699_length_338_cov_30.857143:1-338 changes to pilon.changes [pilon] Writing updated NODE_9699_length_338_cov_30.857143_pilon to pilon.fasta [pilon] Writing NODE_9700_length_338_cov_29.755760:1-338 changes to pilon.changes [pilon] Writing updated NODE_9700_length_338_cov_29.755760_pilon to pilon.fasta [pilon] Writing NODE_9701_length_338_cov_27.064516:1-338 changes to pilon.changes [pilon] Writing updated NODE_9701_length_338_cov_27.064516_pilon to pilon.fasta [pilon] Writing NODE_9702_length_338_cov_25.635945:1-338 changes to pilon.changes [pilon] Writing updated NODE_9702_length_338_cov_25.635945_pilon to pilon.fasta [pilon] Writing NODE_9703_length_338_cov_25.248848:1-338 changes to pilon.changes [pilon] Writing updated NODE_9703_length_338_cov_25.248848_pilon to pilon.fasta [pilon] Writing NODE_9704_length_338_cov_17.562212:1-338 changes to pilon.changes [pilon] Writing updated NODE_9704_length_338_cov_17.562212_pilon to pilon.fasta [pilon] Writing NODE_9705_length_338_cov_12.907834:1-338 changes to pilon.changes [pilon] Writing updated NODE_9705_length_338_cov_12.907834_pilon to pilon.fasta [pilon] Writing NODE_9706_length_338_cov_12.327189:1-338 changes to pilon.changes [pilon] Writing updated NODE_9706_length_338_cov_12.327189_pilon to pilon.fasta [pilon] Writing NODE_9707_length_338_cov_11.562212:1-338 changes to pilon.changes [pilon] Writing updated NODE_9707_length_338_cov_11.562212_pilon to pilon.fasta [pilon] Writing NODE_9708_length_338_cov_8.516129:1-338 changes to pilon.changes [pilon] Writing updated NODE_9708_length_338_cov_8.516129_pilon to pilon.fasta [pilon] Writing NODE_9709_length_338_cov_6.474654:1-338 changes to pilon.changes [pilon] Writing updated NODE_9709_length_338_cov_6.474654_pilon to pilon.fasta [pilon] Writing NODE_9710_length_338_cov_5.870968:1-338 changes to pilon.changes [pilon] Writing updated NODE_9710_length_338_cov_5.870968_pilon to pilon.fasta [pilon] Writing NODE_9711_length_338_cov_5.285714:1-338 changes to pilon.changes [pilon] Writing updated NODE_9711_length_338_cov_5.285714_pilon to pilon.fasta [pilon] Writing NODE_9712_length_337_cov_36.055556:1-337 changes to pilon.changes [pilon] Writing updated NODE_9712_length_337_cov_36.055556_pilon to pilon.fasta [pilon] Writing NODE_9713_length_337_cov_28.180556:1-337 changes to pilon.changes [pilon] Writing updated NODE_9713_length_337_cov_28.180556_pilon to pilon.fasta [pilon] Writing NODE_9714_length_337_cov_25.634259:1-337 changes to pilon.changes [pilon] Writing updated NODE_9714_length_337_cov_25.634259_pilon to pilon.fasta [pilon] Writing NODE_9715_length_337_cov_23.611111:1-337 changes to pilon.changes [pilon] Writing updated NODE_9715_length_337_cov_23.611111_pilon to pilon.fasta [pilon] Writing NODE_9716_length_337_cov_22.129630:1-337 changes to pilon.changes [pilon] Writing updated NODE_9716_length_337_cov_22.129630_pilon to pilon.fasta [pilon] Writing NODE_9717_length_337_cov_20.162037:1-337 changes to pilon.changes [pilon] Writing updated NODE_9717_length_337_cov_20.162037_pilon to pilon.fasta [pilon] Writing NODE_9718_length_337_cov_18.162037:1-337 changes to pilon.changes [pilon] Writing updated NODE_9718_length_337_cov_18.162037_pilon to pilon.fasta [pilon] Writing NODE_9719_length_337_cov_10.291667:1-337 changes to pilon.changes [pilon] Writing updated NODE_9719_length_337_cov_10.291667_pilon to pilon.fasta [pilon] Writing NODE_9720_length_337_cov_9.777778:1-337 changes to pilon.changes [pilon] Writing updated NODE_9720_length_337_cov_9.777778_pilon to pilon.fasta [pilon] Writing NODE_9721_length_337_cov_8.759259:1-337 changes to pilon.changes [pilon] Writing updated NODE_9721_length_337_cov_8.759259_pilon to pilon.fasta [pilon] Writing NODE_9722_length_337_cov_7.361111:1-337 changes to pilon.changes [pilon] Writing updated NODE_9722_length_337_cov_7.361111_pilon to pilon.fasta [pilon] Writing NODE_9723_length_336_cov_69.600000:1-336 changes to pilon.changes [pilon] Writing updated NODE_9723_length_336_cov_69.600000_pilon to pilon.fasta [pilon] Writing NODE_9724_length_336_cov_62.339535:1-336 changes to pilon.changes [pilon] Writing updated NODE_9724_length_336_cov_62.339535_pilon to pilon.fasta [pilon] Writing NODE_9725_length_336_cov_48.479070:1-336 changes to pilon.changes [pilon] Writing updated NODE_9725_length_336_cov_48.479070_pilon to pilon.fasta [pilon] Writing NODE_9726_length_336_cov_43.967442:1-336 changes to pilon.changes [pilon] Writing updated NODE_9726_length_336_cov_43.967442_pilon to pilon.fasta [pilon] Writing NODE_9727_length_336_cov_36.334884:1-336 changes to pilon.changes [pilon] Writing updated NODE_9727_length_336_cov_36.334884_pilon to pilon.fasta [pilon] Writing NODE_9728_length_336_cov_35.386047:1-336 changes to pilon.changes [pilon] Writing updated NODE_9728_length_336_cov_35.386047_pilon to pilon.fasta [pilon] Writing NODE_9729_length_336_cov_34.502326:1-336 changes to pilon.changes [pilon] Writing updated NODE_9729_length_336_cov_34.502326_pilon to pilon.fasta [pilon] Writing NODE_9730_length_336_cov_32.753488:1-336 changes to pilon.changes [pilon] Writing updated NODE_9730_length_336_cov_32.753488_pilon to pilon.fasta [pilon] Writing NODE_9731_length_336_cov_31.316279:1-336 changes to pilon.changes [pilon] Writing updated NODE_9731_length_336_cov_31.316279_pilon to pilon.fasta [pilon] Writing NODE_9732_length_336_cov_30.665116:1-336 changes to pilon.changes [pilon] Writing updated NODE_9732_length_336_cov_30.665116_pilon to pilon.fasta [pilon] Writing NODE_9733_length_336_cov_30.460465:1-336 changes to pilon.changes [pilon] Writing updated NODE_9733_length_336_cov_30.460465_pilon to pilon.fasta [pilon] Writing NODE_9734_length_336_cov_30.083721:1-336 changes to pilon.changes [pilon] Writing updated NODE_9734_length_336_cov_30.083721_pilon to pilon.fasta [pilon] Writing NODE_9735_length_336_cov_29.906977:1-336 changes to pilon.changes [pilon] Writing updated NODE_9735_length_336_cov_29.906977_pilon to pilon.fasta [pilon] Writing NODE_9736_length_336_cov_29.190698:1-336 changes to pilon.changes [pilon] Writing updated NODE_9736_length_336_cov_29.190698_pilon to pilon.fasta [pilon] Writing NODE_9737_length_336_cov_26.455814:1-336 changes to pilon.changes [pilon] Writing updated NODE_9737_length_336_cov_26.455814_pilon to pilon.fasta [pilon] Writing NODE_9738_length_336_cov_25.334884:1-336 changes to pilon.changes [pilon] Writing updated NODE_9738_length_336_cov_25.334884_pilon to pilon.fasta [pilon] Writing NODE_9739_length_336_cov_23.400000:1-336 changes to pilon.changes [pilon] Writing updated NODE_9739_length_336_cov_23.400000_pilon to pilon.fasta [pilon] Writing NODE_9740_length_336_cov_23.297674:1-336 changes to pilon.changes [pilon] Writing updated NODE_9740_length_336_cov_23.297674_pilon to pilon.fasta [pilon] Writing NODE_9741_length_336_cov_21.465116:1-336 changes to pilon.changes [pilon] Writing updated NODE_9741_length_336_cov_21.465116_pilon to pilon.fasta [pilon] Writing NODE_9742_length_336_cov_21.381395:1-336 changes to pilon.changes [pilon] Writing updated NODE_9742_length_336_cov_21.381395_pilon to pilon.fasta [pilon] Writing NODE_9743_length_336_cov_21.130233:1-336 changes to pilon.changes [pilon] Writing updated NODE_9743_length_336_cov_21.130233_pilon to pilon.fasta [pilon] Writing NODE_9744_length_336_cov_20.618605:1-336 changes to pilon.changes [pilon] Writing updated NODE_9744_length_336_cov_20.618605_pilon to pilon.fasta [pilon] Writing NODE_9745_length_336_cov_20.102326:1-336 changes to pilon.changes [pilon] Writing updated NODE_9745_length_336_cov_20.102326_pilon to pilon.fasta [pilon] Writing NODE_9746_length_336_cov_18.358140:1-336 changes to pilon.changes [pilon] Writing updated NODE_9746_length_336_cov_18.358140_pilon to pilon.fasta [pilon] Writing NODE_9747_length_336_cov_18.186047:1-336 changes to pilon.changes [pilon] Writing updated NODE_9747_length_336_cov_18.186047_pilon to pilon.fasta [pilon] Writing NODE_9748_length_336_cov_17.172093:1-336 changes to pilon.changes [pilon] Writing updated NODE_9748_length_336_cov_17.172093_pilon to pilon.fasta [pilon] Writing NODE_9749_length_336_cov_17.153488:1-336 changes to pilon.changes [pilon] Writing updated NODE_9749_length_336_cov_17.153488_pilon to pilon.fasta [pilon] Writing NODE_9750_length_336_cov_16.283721:1-336 changes to pilon.changes [pilon] Writing updated NODE_9750_length_336_cov_16.283721_pilon to pilon.fasta [pilon] Writing NODE_9751_length_336_cov_16.260465:1-336 changes to pilon.changes [pilon] Writing updated NODE_9751_length_336_cov_16.260465_pilon to pilon.fasta [pilon] Writing NODE_9752_length_336_cov_16.046512:1-336 changes to pilon.changes [pilon] Writing updated NODE_9752_length_336_cov_16.046512_pilon to pilon.fasta [pilon] Writing NODE_9753_length_336_cov_15.381395:1-336 changes to pilon.changes [pilon] Writing updated NODE_9753_length_336_cov_15.381395_pilon to pilon.fasta [pilon] Writing NODE_9754_length_336_cov_14.744186:1-336 changes to pilon.changes [pilon] Writing updated NODE_9754_length_336_cov_14.744186_pilon to pilon.fasta [pilon] Writing NODE_9755_length_336_cov_14.511628:1-336 changes to pilon.changes [pilon] Writing updated NODE_9755_length_336_cov_14.511628_pilon to pilon.fasta [pilon] Writing NODE_9756_length_336_cov_14.237209:1-336 changes to pilon.changes [pilon] Writing updated NODE_9756_length_336_cov_14.237209_pilon to pilon.fasta [pilon] Writing NODE_9757_length_336_cov_14.204651:1-336 changes to pilon.changes [pilon] Writing updated NODE_9757_length_336_cov_14.204651_pilon to pilon.fasta [pilon] Writing NODE_9758_length_336_cov_13.995349:1-336 changes to pilon.changes [pilon] Writing updated NODE_9758_length_336_cov_13.995349_pilon to pilon.fasta [pilon] Writing NODE_9759_length_336_cov_13.976744:1-336 changes to pilon.changes [pilon] Writing updated NODE_9759_length_336_cov_13.976744_pilon to pilon.fasta [pilon] Writing NODE_9760_length_336_cov_13.520930:1-336 changes to pilon.changes [pilon] Writing updated NODE_9760_length_336_cov_13.520930_pilon to pilon.fasta [pilon] Writing NODE_9761_length_336_cov_13.386047:1-336 changes to pilon.changes [pilon] Writing updated NODE_9761_length_336_cov_13.386047_pilon to pilon.fasta [pilon] Writing NODE_9762_length_336_cov_12.102326:1-336 changes to pilon.changes [pilon] Writing updated NODE_9762_length_336_cov_12.102326_pilon to pilon.fasta [pilon] Writing NODE_9763_length_336_cov_11.632558:1-336 changes to pilon.changes [pilon] Writing updated NODE_9763_length_336_cov_11.632558_pilon to pilon.fasta [pilon] Writing NODE_9764_length_336_cov_11.376744:1-336 changes to pilon.changes [pilon] Writing updated NODE_9764_length_336_cov_11.376744_pilon to pilon.fasta [pilon] Writing NODE_9765_length_336_cov_11.055814:1-336 changes to pilon.changes [pilon] Writing updated NODE_9765_length_336_cov_11.055814_pilon to pilon.fasta [pilon] Writing NODE_9766_length_336_cov_10.893023:1-336 changes to pilon.changes [pilon] Writing updated NODE_9766_length_336_cov_10.893023_pilon to pilon.fasta [pilon] Writing NODE_9767_length_336_cov_9.920930:1-336 changes to pilon.changes [pilon] Writing updated NODE_9767_length_336_cov_9.920930_pilon to pilon.fasta [pilon] Writing NODE_9768_length_336_cov_9.823256:1-336 changes to pilon.changes [pilon] Writing updated NODE_9768_length_336_cov_9.823256_pilon to pilon.fasta [pilon] Writing NODE_9769_length_336_cov_9.809302:1-336 changes to pilon.changes [pilon] Writing updated NODE_9769_length_336_cov_9.809302_pilon to pilon.fasta [pilon] Writing NODE_9770_length_336_cov_9.795349:1-336 changes to pilon.changes [pilon] Writing updated NODE_9770_length_336_cov_9.795349_pilon to pilon.fasta [pilon] Writing NODE_9771_length_336_cov_9.651163:1-336 changes to pilon.changes [pilon] Writing updated NODE_9771_length_336_cov_9.651163_pilon to pilon.fasta [pilon] Writing NODE_9772_length_336_cov_8.860465:1-336 changes to pilon.changes [pilon] Writing updated NODE_9772_length_336_cov_8.860465_pilon to pilon.fasta [pilon] Writing NODE_9773_length_336_cov_8.413953:1-336 changes to pilon.changes [pilon] Writing updated NODE_9773_length_336_cov_8.413953_pilon to pilon.fasta [pilon] Writing NODE_9774_length_336_cov_8.009302:1-336 changes to pilon.changes [pilon] Writing updated NODE_9774_length_336_cov_8.009302_pilon to pilon.fasta [pilon] Writing NODE_9775_length_336_cov_5.237209:1-336 changes to pilon.changes [pilon] Writing updated NODE_9775_length_336_cov_5.237209_pilon to pilon.fasta [pilon] Writing NODE_9776_length_336_cov_0.944186:1-336 changes to pilon.changes [pilon] Writing updated NODE_9776_length_336_cov_0.944186_pilon to pilon.fasta [pilon] Writing NODE_9777_length_335_cov_60.046729:1-335 changes to pilon.changes [pilon] Writing updated NODE_9777_length_335_cov_60.046729_pilon to pilon.fasta [pilon] Writing NODE_9778_length_335_cov_33.672897:1-335 changes to pilon.changes [pilon] Writing updated NODE_9778_length_335_cov_33.672897_pilon to pilon.fasta [pilon] Writing NODE_9779_length_335_cov_33.397196:1-335 changes to pilon.changes [pilon] Writing updated NODE_9779_length_335_cov_33.397196_pilon to pilon.fasta [pilon] Writing NODE_9780_length_335_cov_26.883178:1-335 changes to pilon.changes [pilon] Writing updated NODE_9780_length_335_cov_26.883178_pilon to pilon.fasta [pilon] Writing NODE_9781_length_335_cov_23.630841:1-335 changes to pilon.changes [pilon] Writing updated NODE_9781_length_335_cov_23.630841_pilon to pilon.fasta [pilon] Writing NODE_9782_length_335_cov_23.182243:1-335 changes to pilon.changes [pilon] Writing updated NODE_9782_length_335_cov_23.182243_pilon to pilon.fasta [pilon] Writing NODE_9783_length_335_cov_18.359813:1-335 changes to pilon.changes [pilon] Writing updated NODE_9783_length_335_cov_18.359813_pilon to pilon.fasta [pilon] Writing NODE_9784_length_335_cov_17.714953:1-335 changes to pilon.changes [pilon] Writing updated NODE_9784_length_335_cov_17.714953_pilon to pilon.fasta [pilon] Writing NODE_9785_length_335_cov_16.953271:1-335 changes to pilon.changes [pilon] Writing updated NODE_9785_length_335_cov_16.953271_pilon to pilon.fasta [pilon] Writing NODE_9786_length_335_cov_14.149533:1-335 changes to pilon.changes [pilon] Writing updated NODE_9786_length_335_cov_14.149533_pilon to pilon.fasta [pilon] Writing NODE_9787_length_335_cov_13.696262:1-335 changes to pilon.changes [pilon] Writing updated NODE_9787_length_335_cov_13.696262_pilon to pilon.fasta [pilon] Writing NODE_9788_length_335_cov_11.261682:1-335 changes to pilon.changes [pilon] Writing updated NODE_9788_length_335_cov_11.261682_pilon to pilon.fasta [pilon] Writing NODE_9789_length_335_cov_9.214953:1-335 changes to pilon.changes [pilon] Writing updated NODE_9789_length_335_cov_9.214953_pilon to pilon.fasta [pilon] Writing NODE_9790_length_335_cov_9.056075:1-335 changes to pilon.changes [pilon] Writing updated NODE_9790_length_335_cov_9.056075_pilon to pilon.fasta [pilon] Writing NODE_9791_length_334_cov_61.596244:1-334 changes to pilon.changes [pilon] Writing updated NODE_9791_length_334_cov_61.596244_pilon to pilon.fasta [pilon] Writing NODE_9792_length_334_cov_27.319249:1-334 changes to pilon.changes [pilon] Writing updated NODE_9792_length_334_cov_27.319249_pilon to pilon.fasta [pilon] Writing NODE_9793_length_334_cov_20.708920:1-334 changes to pilon.changes [pilon] Writing updated NODE_9793_length_334_cov_20.708920_pilon to pilon.fasta [pilon] Writing NODE_9794_length_334_cov_19.718310:1-334 changes to pilon.changes [pilon] Writing updated NODE_9794_length_334_cov_19.718310_pilon to pilon.fasta [pilon] Writing NODE_9795_length_334_cov_19.544601:1-334 changes to pilon.changes [pilon] Writing updated NODE_9795_length_334_cov_19.544601_pilon to pilon.fasta [pilon] Writing NODE_9796_length_334_cov_18.253521:1-334 changes to pilon.changes [pilon] Writing updated NODE_9796_length_334_cov_18.253521_pilon to pilon.fasta [pilon] Writing NODE_9797_length_334_cov_17.065728:1-334 changes to pilon.changes [pilon] Writing updated NODE_9797_length_334_cov_17.065728_pilon to pilon.fasta [pilon] Writing NODE_9798_length_334_cov_16.131455:1-334 changes to pilon.changes [pilon] Writing updated NODE_9798_length_334_cov_16.131455_pilon to pilon.fasta [pilon] Writing NODE_9799_length_334_cov_14.690141:1-334 changes to pilon.changes [pilon] Writing updated NODE_9799_length_334_cov_14.690141_pilon to pilon.fasta [pilon] Writing NODE_9800_length_334_cov_12.032864:1-334 changes to pilon.changes [pilon] Writing updated NODE_9800_length_334_cov_12.032864_pilon to pilon.fasta [pilon] Writing NODE_9801_length_334_cov_9.211268:1-334 changes to pilon.changes [pilon] Writing updated NODE_9801_length_334_cov_9.211268_pilon to pilon.fasta [pilon] Writing NODE_9802_length_334_cov_8.314554:1-334 changes to pilon.changes [pilon] Writing updated NODE_9802_length_334_cov_8.314554_pilon to pilon.fasta [pilon] Writing NODE_9803_length_334_cov_7.173709:1-334 changes to pilon.changes [pilon] Writing updated NODE_9803_length_334_cov_7.173709_pilon to pilon.fasta [pilon] Writing NODE_9804_length_334_cov_6.032864:1-334 changes to pilon.changes [pilon] Writing updated NODE_9804_length_334_cov_6.032864_pilon to pilon.fasta [pilon] Writing NODE_9805_length_333_cov_43.693396:1-333 changes to pilon.changes [pilon] Writing updated NODE_9805_length_333_cov_43.693396_pilon to pilon.fasta [pilon] Writing NODE_9806_length_333_cov_41.377358:1-333 changes to pilon.changes [pilon] Writing updated NODE_9806_length_333_cov_41.377358_pilon to pilon.fasta [pilon] Writing NODE_9807_length_333_cov_31.518868:1-333 changes to pilon.changes [pilon] Writing updated NODE_9807_length_333_cov_31.518868_pilon to pilon.fasta [pilon] Writing NODE_9808_length_333_cov_31.160377:1-333 changes to pilon.changes [pilon] Writing updated NODE_9808_length_333_cov_31.160377_pilon to pilon.fasta [pilon] Writing NODE_9809_length_333_cov_30.165094:1-333 changes to pilon.changes [pilon] Writing updated NODE_9809_length_333_cov_30.165094_pilon to pilon.fasta [pilon] Writing NODE_9810_length_333_cov_27.320755:1-333 changes to pilon.changes [pilon] Writing updated NODE_9810_length_333_cov_27.320755_pilon to pilon.fasta [pilon] Writing NODE_9811_length_333_cov_26.773585:1-333 changes to pilon.changes [pilon] Writing updated NODE_9811_length_333_cov_26.773585_pilon to pilon.fasta [pilon] Writing NODE_9812_length_333_cov_26.773585:1-333 changes to pilon.changes [pilon] Writing updated NODE_9812_length_333_cov_26.773585_pilon to pilon.fasta [pilon] Writing NODE_9813_length_333_cov_25.509434:1-333 changes to pilon.changes [pilon] Writing updated NODE_9813_length_333_cov_25.509434_pilon to pilon.fasta [pilon] Writing NODE_9814_length_333_cov_24.627358:1-333 changes to pilon.changes [pilon] Writing updated NODE_9814_length_333_cov_24.627358_pilon to pilon.fasta [pilon] Writing NODE_9815_length_333_cov_24.584906:1-333 changes to pilon.changes [pilon] Writing updated NODE_9815_length_333_cov_24.584906_pilon to pilon.fasta [pilon] Writing NODE_9816_length_333_cov_24.084906:1-333 changes to pilon.changes [pilon] Writing updated NODE_9816_length_333_cov_24.084906_pilon to pilon.fasta [pilon] Writing NODE_9817_length_333_cov_23.886792:1-333 changes to pilon.changes [pilon] Writing updated NODE_9817_length_333_cov_23.886792_pilon to pilon.fasta [pilon] Writing NODE_9818_length_333_cov_23.264151:1-333 changes to pilon.changes [pilon] Writing updated NODE_9818_length_333_cov_23.264151_pilon to pilon.fasta [pilon] Writing NODE_9819_length_333_cov_22.773585:1-333 changes to pilon.changes [pilon] Writing updated NODE_9819_length_333_cov_22.773585_pilon to pilon.fasta [pilon] Writing NODE_9820_length_333_cov_21.448113:1-333 changes to pilon.changes [pilon] Writing updated NODE_9820_length_333_cov_21.448113_pilon to pilon.fasta [pilon] Writing NODE_9821_length_333_cov_21.009434:1-333 changes to pilon.changes [pilon] Writing updated NODE_9821_length_333_cov_21.009434_pilon to pilon.fasta [pilon] Writing NODE_9822_length_333_cov_19.099057:1-333 changes to pilon.changes [pilon] Writing updated NODE_9822_length_333_cov_19.099057_pilon to pilon.fasta [pilon] Writing NODE_9823_length_333_cov_18.985849:1-333 changes to pilon.changes [pilon] Writing updated NODE_9823_length_333_cov_18.985849_pilon to pilon.fasta [pilon] Writing NODE_9824_length_333_cov_18.400943:1-333 changes to pilon.changes [pilon] Writing updated NODE_9824_length_333_cov_18.400943_pilon to pilon.fasta [pilon] Writing NODE_9825_length_333_cov_18.141509:1-333 changes to pilon.changes [pilon] Writing updated NODE_9825_length_333_cov_18.141509_pilon to pilon.fasta [pilon] Writing NODE_9826_length_333_cov_17.731132:1-333 changes to pilon.changes [pilon] Writing updated NODE_9826_length_333_cov_17.731132_pilon to pilon.fasta [pilon] Writing NODE_9827_length_333_cov_17.216981:1-333 changes to pilon.changes [pilon] Writing updated NODE_9827_length_333_cov_17.216981_pilon to pilon.fasta [pilon] Writing NODE_9828_length_333_cov_16.679245:1-333 changes to pilon.changes [pilon] Writing updated NODE_9828_length_333_cov_16.679245_pilon to pilon.fasta [pilon] Writing NODE_9829_length_333_cov_16.235849:1-333 changes to pilon.changes [pilon] Writing updated NODE_9829_length_333_cov_16.235849_pilon to pilon.fasta [pilon] Writing NODE_9830_length_333_cov_16.179245:1-333 changes to pilon.changes [pilon] Writing updated NODE_9830_length_333_cov_16.179245_pilon to pilon.fasta [pilon] Writing NODE_9831_length_333_cov_16.009434:1-333 changes to pilon.changes [pilon] Writing updated NODE_9831_length_333_cov_16.009434_pilon to pilon.fasta [pilon] Writing NODE_9832_length_333_cov_15.896226:1-333 changes to pilon.changes [pilon] Writing updated NODE_9832_length_333_cov_15.896226_pilon to pilon.fasta [pilon] Writing NODE_9833_length_333_cov_13.919811:1-333 changes to pilon.changes [pilon] Writing updated NODE_9833_length_333_cov_13.919811_pilon to pilon.fasta [pilon] Writing NODE_9834_length_333_cov_13.231132:1-333 changes to pilon.changes [pilon] Writing updated NODE_9834_length_333_cov_13.231132_pilon to pilon.fasta [pilon] Writing NODE_9835_length_333_cov_12.943396:1-333 changes to pilon.changes [pilon] Writing updated NODE_9835_length_333_cov_12.943396_pilon to pilon.fasta [pilon] Writing NODE_9836_length_333_cov_12.801887:1-333 changes to pilon.changes [pilon] Writing updated NODE_9836_length_333_cov_12.801887_pilon to pilon.fasta [pilon] Writing NODE_9837_length_333_cov_11.655660:1-333 changes to pilon.changes [pilon] Writing updated NODE_9837_length_333_cov_11.655660_pilon to pilon.fasta [pilon] Writing NODE_9838_length_333_cov_10.485849:1-333 changes to pilon.changes [pilon] Writing updated NODE_9838_length_333_cov_10.485849_pilon to pilon.fasta [pilon] Writing NODE_9839_length_333_cov_10.358491:1-333 changes to pilon.changes [pilon] Writing updated NODE_9839_length_333_cov_10.358491_pilon to pilon.fasta [pilon] Writing NODE_9840_length_333_cov_10.349057:1-333 changes to pilon.changes [pilon] Writing updated NODE_9840_length_333_cov_10.349057_pilon to pilon.fasta [pilon] Writing NODE_9841_length_333_cov_10.179245:1-333 changes to pilon.changes [pilon] Writing updated NODE_9841_length_333_cov_10.179245_pilon to pilon.fasta [pilon] Writing NODE_9842_length_333_cov_9.957547:1-333 changes to pilon.changes [pilon] Writing updated NODE_9842_length_333_cov_9.957547_pilon to pilon.fasta [pilon] Writing NODE_9843_length_333_cov_9.584906:1-333 changes to pilon.changes [pilon] Writing updated NODE_9843_length_333_cov_9.584906_pilon to pilon.fasta [pilon] Writing NODE_9844_length_333_cov_9.504717:1-333 changes to pilon.changes [pilon] Writing updated NODE_9844_length_333_cov_9.504717_pilon to pilon.fasta [pilon] Writing NODE_9845_length_333_cov_8.231132:1-333 changes to pilon.changes [pilon] Writing updated NODE_9845_length_333_cov_8.231132_pilon to pilon.fasta [pilon] Writing NODE_9846_length_333_cov_8.127358:1-333 changes to pilon.changes [pilon] Writing updated NODE_9846_length_333_cov_8.127358_pilon to pilon.fasta [pilon] Writing NODE_9847_length_333_cov_6.174528:1-333 changes to pilon.changes [pilon] Writing updated NODE_9847_length_333_cov_6.174528_pilon to pilon.fasta [pilon] Writing NODE_9848_length_333_cov_5.122642:1-333 changes to pilon.changes [pilon] Writing updated NODE_9848_length_333_cov_5.122642_pilon to pilon.fasta [pilon] Writing NODE_9849_length_332_cov_35.213270:1-332 changes to pilon.changes [pilon] Writing updated NODE_9849_length_332_cov_35.213270_pilon to pilon.fasta [pilon] Writing NODE_9850_length_332_cov_28.113744:1-332 changes to pilon.changes [pilon] Writing updated NODE_9850_length_332_cov_28.113744_pilon to pilon.fasta [pilon] Writing NODE_9851_length_332_cov_25.170616:1-332 changes to pilon.changes [pilon] Writing updated NODE_9851_length_332_cov_25.170616_pilon to pilon.fasta [pilon] Writing NODE_9852_length_332_cov_25.142180:1-332 changes to pilon.changes [pilon] Writing updated NODE_9852_length_332_cov_25.142180_pilon to pilon.fasta [pilon] Writing NODE_9853_length_332_cov_19.649289:1-332 changes to pilon.changes [pilon] Writing updated NODE_9853_length_332_cov_19.649289_pilon to pilon.fasta [pilon] Writing NODE_9854_length_332_cov_19.298578:1-332 changes to pilon.changes [pilon] Writing updated NODE_9854_length_332_cov_19.298578_pilon to pilon.fasta [pilon] Writing NODE_9855_length_332_cov_18.563981:1-332 changes to pilon.changes [pilon] Writing updated NODE_9855_length_332_cov_18.563981_pilon to pilon.fasta [pilon] Writing NODE_9856_length_332_cov_17.677725:1-332 changes to pilon.changes [pilon] Writing updated NODE_9856_length_332_cov_17.677725_pilon to pilon.fasta [pilon] Writing NODE_9857_length_332_cov_9.497630:1-332 changes to pilon.changes [pilon] Writing updated NODE_9857_length_332_cov_9.497630_pilon to pilon.fasta [pilon] Writing NODE_9858_length_332_cov_5.981043:1-332 changes to pilon.changes [pilon] Writing updated NODE_9858_length_332_cov_5.981043_pilon to pilon.fasta [pilon] Writing NODE_9859_length_331_cov_58.866667:1-331 changes to pilon.changes [pilon] Writing updated NODE_9859_length_331_cov_58.866667_pilon to pilon.fasta [pilon] Writing NODE_9860_length_331_cov_32.690476:1-331 changes to pilon.changes [pilon] Writing updated NODE_9860_length_331_cov_32.690476_pilon to pilon.fasta [pilon] Writing NODE_9861_length_331_cov_22.585714:1-331 changes to pilon.changes [pilon] Writing updated NODE_9861_length_331_cov_22.585714_pilon to pilon.fasta [pilon] Writing NODE_9862_length_331_cov_20.771429:1-331 changes to pilon.changes [pilon] Writing updated NODE_9862_length_331_cov_20.771429_pilon to pilon.fasta [pilon] Writing NODE_9863_length_331_cov_19.633333:1-331 changes to pilon.changes [pilon] Writing updated NODE_9863_length_331_cov_19.633333_pilon to pilon.fasta [pilon] Writing NODE_9864_length_331_cov_18.352381:1-331 changes to pilon.changes [pilon] Writing updated NODE_9864_length_331_cov_18.352381_pilon to pilon.fasta [pilon] Writing NODE_9865_length_331_cov_17.852381:1-331 changes to pilon.changes [pilon] Writing updated NODE_9865_length_331_cov_17.852381_pilon to pilon.fasta [pilon] Writing NODE_9866_length_331_cov_14.500000:1-331 changes to pilon.changes [pilon] Writing updated NODE_9866_length_331_cov_14.500000_pilon to pilon.fasta [pilon] Writing NODE_9867_length_331_cov_12.138095:1-331 changes to pilon.changes [pilon] Writing updated NODE_9867_length_331_cov_12.138095_pilon to pilon.fasta [pilon] Writing NODE_9868_length_331_cov_8.123810:1-331 changes to pilon.changes [pilon] Writing updated NODE_9868_length_331_cov_8.123810_pilon to pilon.fasta [pilon] Writing NODE_9869_length_331_cov_6.709524:1-331 changes to pilon.changes [pilon] Writing updated NODE_9869_length_331_cov_6.709524_pilon to pilon.fasta [pilon] Writing NODE_9870_length_330_cov_38.674641:1-330 changes to pilon.changes [pilon] Writing updated NODE_9870_length_330_cov_38.674641_pilon to pilon.fasta [pilon] Writing NODE_9871_length_330_cov_36.851675:1-330 changes to pilon.changes [pilon] Writing updated NODE_9871_length_330_cov_36.851675_pilon to pilon.fasta [pilon] Writing NODE_9872_length_330_cov_32.330144:1-330 changes to pilon.changes [pilon] Writing updated NODE_9872_length_330_cov_32.330144_pilon to pilon.fasta [pilon] Writing NODE_9873_length_330_cov_31.411483:1-330 changes to pilon.changes [pilon] Writing updated NODE_9873_length_330_cov_31.411483_pilon to pilon.fasta [pilon] Writing NODE_9874_length_330_cov_30.401914:1-330 changes to pilon.changes [pilon] Writing updated NODE_9874_length_330_cov_30.401914_pilon to pilon.fasta [pilon] Writing NODE_9875_length_330_cov_30.282297:1-330 changes to pilon.changes [pilon] Writing updated NODE_9875_length_330_cov_30.282297_pilon to pilon.fasta [pilon] Writing NODE_9876_length_330_cov_30.200957:1-330 changes to pilon.changes [pilon] Writing updated NODE_9876_length_330_cov_30.200957_pilon to pilon.fasta [pilon] Writing NODE_9877_length_330_cov_30.162679:1-330 changes to pilon.changes [pilon] Writing updated NODE_9877_length_330_cov_30.162679_pilon to pilon.fasta [pilon] Writing NODE_9878_length_330_cov_29.028708:1-330 changes to pilon.changes [pilon] Writing updated NODE_9878_length_330_cov_29.028708_pilon to pilon.fasta [pilon] Writing NODE_9879_length_330_cov_29.009569:1-330 changes to pilon.changes [pilon] Writing updated NODE_9879_length_330_cov_29.009569_pilon to pilon.fasta [pilon] Writing NODE_9880_length_330_cov_28.794258:1-330 changes to pilon.changes [pilon] Writing updated NODE_9880_length_330_cov_28.794258_pilon to pilon.fasta [pilon] Writing NODE_9881_length_330_cov_28.583732:1-330 changes to pilon.changes [pilon] Writing updated NODE_9881_length_330_cov_28.583732_pilon to pilon.fasta [pilon] Writing NODE_9882_length_330_cov_27.861244:1-330 changes to pilon.changes [pilon] Writing updated NODE_9882_length_330_cov_27.861244_pilon to pilon.fasta [pilon] Writing NODE_9883_length_330_cov_26.923445:1-330 changes to pilon.changes [pilon] Writing updated NODE_9883_length_330_cov_26.923445_pilon to pilon.fasta [pilon] Writing NODE_9884_length_330_cov_25.784689:1-330 changes to pilon.changes [pilon] Writing updated NODE_9884_length_330_cov_25.784689_pilon to pilon.fasta [pilon] Writing NODE_9885_length_330_cov_25.368421:1-330 changes to pilon.changes [pilon] Writing updated NODE_9885_length_330_cov_25.368421_pilon to pilon.fasta [pilon] Writing NODE_9886_length_330_cov_24.971292:1-330 changes to pilon.changes [pilon] Writing updated NODE_9886_length_330_cov_24.971292_pilon to pilon.fasta [pilon] Writing NODE_9887_length_330_cov_24.019139:1-330 changes to pilon.changes [pilon] Writing updated NODE_9887_length_330_cov_24.019139_pilon to pilon.fasta [pilon] Writing NODE_9888_length_330_cov_22.698565:1-330 changes to pilon.changes [pilon] Writing updated NODE_9888_length_330_cov_22.698565_pilon to pilon.fasta [pilon] Writing NODE_9889_length_330_cov_22.191388:1-330 changes to pilon.changes [pilon] Writing updated NODE_9889_length_330_cov_22.191388_pilon to pilon.fasta [pilon] Writing NODE_9890_length_330_cov_21.650718:1-330 changes to pilon.changes [pilon] Writing updated NODE_9890_length_330_cov_21.650718_pilon to pilon.fasta [pilon] Writing NODE_9891_length_330_cov_21.511962:1-330 changes to pilon.changes [pilon] Writing updated NODE_9891_length_330_cov_21.511962_pilon to pilon.fasta [pilon] Writing NODE_9892_length_330_cov_21.038278:1-330 changes to pilon.changes [pilon] Writing updated NODE_9892_length_330_cov_21.038278_pilon to pilon.fasta [pilon] Writing NODE_9893_length_330_cov_20.325359:1-330 changes to pilon.changes [pilon] Writing updated NODE_9893_length_330_cov_20.325359_pilon to pilon.fasta [pilon] Writing NODE_9894_length_330_cov_19.583732:1-330 changes to pilon.changes [pilon] Writing updated NODE_9894_length_330_cov_19.583732_pilon to pilon.fasta [pilon] Writing NODE_9895_length_330_cov_19.014354:1-330 changes to pilon.changes [pilon] Writing updated NODE_9895_length_330_cov_19.014354_pilon to pilon.fasta [pilon] Writing NODE_9896_length_330_cov_18.961722:1-330 changes to pilon.changes [pilon] Writing updated NODE_9896_length_330_cov_18.961722_pilon to pilon.fasta [pilon] Writing NODE_9897_length_330_cov_17.889952:1-330 changes to pilon.changes [pilon] Writing updated NODE_9897_length_330_cov_17.889952_pilon to pilon.fasta [pilon] Writing NODE_9898_length_330_cov_17.373206:1-330 changes to pilon.changes [pilon] Writing updated NODE_9898_length_330_cov_17.373206_pilon to pilon.fasta [pilon] Writing NODE_9899_length_330_cov_17.143541:1-330 changes to pilon.changes [pilon] Writing updated NODE_9899_length_330_cov_17.143541_pilon to pilon.fasta [pilon] Writing NODE_9900_length_330_cov_16.775120:1-330 changes to pilon.changes [pilon] Writing updated NODE_9900_length_330_cov_16.775120_pilon to pilon.fasta [pilon] Writing NODE_9901_length_330_cov_16.081340:1-330 changes to pilon.changes [pilon] Writing updated NODE_9901_length_330_cov_16.081340_pilon to pilon.fasta [pilon] Writing NODE_9902_length_330_cov_15.928230:1-330 changes to pilon.changes [pilon] Writing updated NODE_9902_length_330_cov_15.928230_pilon to pilon.fasta [pilon] Writing NODE_9903_length_330_cov_13.822967:1-330 changes to pilon.changes [pilon] Writing updated NODE_9903_length_330_cov_13.822967_pilon to pilon.fasta [pilon] Writing NODE_9904_length_330_cov_13.277512:1-330 changes to pilon.changes [pilon] Writing updated NODE_9904_length_330_cov_13.277512_pilon to pilon.fasta [pilon] Writing NODE_9905_length_330_cov_12.923445:1-330 changes to pilon.changes [pilon] Writing updated NODE_9905_length_330_cov_12.923445_pilon to pilon.fasta [pilon] Writing NODE_9906_length_330_cov_12.095694:1-330 changes to pilon.changes [pilon] Writing updated NODE_9906_length_330_cov_12.095694_pilon to pilon.fasta [pilon] Writing NODE_9907_length_330_cov_12.071770:1-330 changes to pilon.changes [pilon] Writing updated NODE_9907_length_330_cov_12.071770_pilon to pilon.fasta [pilon] Writing NODE_9908_length_330_cov_10.827751:1-330 changes to pilon.changes [pilon] Writing updated NODE_9908_length_330_cov_10.827751_pilon to pilon.fasta [pilon] Writing NODE_9909_length_330_cov_10.755981:1-330 changes to pilon.changes [pilon] Writing updated NODE_9909_length_330_cov_10.755981_pilon to pilon.fasta [pilon] Writing NODE_9910_length_330_cov_10.349282:1-330 changes to pilon.changes [pilon] Writing updated NODE_9910_length_330_cov_10.349282_pilon to pilon.fasta [pilon] Writing NODE_9911_length_330_cov_9.277512:1-330 changes to pilon.changes [pilon] Writing updated NODE_9911_length_330_cov_9.277512_pilon to pilon.fasta [pilon] Writing NODE_9912_length_330_cov_8.186603:1-330 changes to pilon.changes [pilon] Writing updated NODE_9912_length_330_cov_8.186603_pilon to pilon.fasta [pilon] Writing NODE_9913_length_330_cov_8.138756:1-330 changes to pilon.changes [pilon] Writing updated NODE_9913_length_330_cov_8.138756_pilon to pilon.fasta [pilon] Writing NODE_9914_length_330_cov_6.693780:1-330 changes to pilon.changes [pilon] Writing updated NODE_9914_length_330_cov_6.693780_pilon to pilon.fasta [pilon] Writing NODE_9915_length_329_cov_21.841346:1-329 changes to pilon.changes [pilon] Writing updated NODE_9915_length_329_cov_21.841346_pilon to pilon.fasta [pilon] Writing NODE_9916_length_329_cov_21.331731:1-329 changes to pilon.changes [pilon] Writing updated NODE_9916_length_329_cov_21.331731_pilon to pilon.fasta [pilon] Writing NODE_9917_length_329_cov_21.028846:1-329 changes to pilon.changes [pilon] Writing updated NODE_9917_length_329_cov_21.028846_pilon to pilon.fasta [pilon] Writing NODE_9918_length_329_cov_18.831731:1-329 changes to pilon.changes [pilon] Writing updated NODE_9918_length_329_cov_18.831731_pilon to pilon.fasta [pilon] Writing NODE_9919_length_329_cov_18.139423:1-329 changes to pilon.changes [pilon] Writing updated NODE_9919_length_329_cov_18.139423_pilon to pilon.fasta [pilon] Writing NODE_9920_length_329_cov_17.528846:1-329 changes to pilon.changes [pilon] Writing updated NODE_9920_length_329_cov_17.528846_pilon to pilon.fasta [pilon] Writing NODE_9921_length_329_cov_16.716346:1-329 changes to pilon.changes [pilon] Writing updated NODE_9921_length_329_cov_16.716346_pilon to pilon.fasta [pilon] Writing NODE_9922_length_329_cov_16.326923:1-329 changes to pilon.changes [pilon] Writing updated NODE_9922_length_329_cov_16.326923_pilon to pilon.fasta [pilon] Writing NODE_9923_length_329_cov_12.028846:1-329 changes to pilon.changes [pilon] Writing updated NODE_9923_length_329_cov_12.028846_pilon to pilon.fasta [pilon] Writing NODE_9924_length_329_cov_10.346154:1-329 changes to pilon.changes [pilon] Writing updated NODE_9924_length_329_cov_10.346154_pilon to pilon.fasta [pilon] Writing NODE_9925_length_329_cov_9.634615:1-329 changes to pilon.changes [pilon] Writing updated NODE_9925_length_329_cov_9.634615_pilon to pilon.fasta [pilon] Writing NODE_9926_length_329_cov_9.110577:1-329 changes to pilon.changes [pilon] Writing updated NODE_9926_length_329_cov_9.110577_pilon to pilon.fasta [pilon] Writing NODE_9927_length_329_cov_3.947115:1-329 changes to pilon.changes [pilon] Writing updated NODE_9927_length_329_cov_3.947115_pilon to pilon.fasta [pilon] Writing NODE_9928_length_328_cov_39.734300:1-328 changes to pilon.changes [pilon] Writing updated NODE_9928_length_328_cov_39.734300_pilon to pilon.fasta [pilon] Writing NODE_9929_length_328_cov_33.106280:1-328 changes to pilon.changes [pilon] Writing updated NODE_9929_length_328_cov_33.106280_pilon to pilon.fasta [pilon] Writing NODE_9930_length_328_cov_30.859903:1-328 changes to pilon.changes [pilon] Writing updated NODE_9930_length_328_cov_30.859903_pilon to pilon.fasta [pilon] Writing NODE_9931_length_328_cov_28.763285:1-328 changes to pilon.changes [pilon] Writing updated NODE_9931_length_328_cov_28.763285_pilon to pilon.fasta [pilon] Writing NODE_9932_length_328_cov_26.840580:1-328 changes to pilon.changes [pilon] Writing updated NODE_9932_length_328_cov_26.840580_pilon to pilon.fasta [pilon] Writing NODE_9933_length_328_cov_25.927536:1-328 changes to pilon.changes [pilon] Writing updated NODE_9933_length_328_cov_25.927536_pilon to pilon.fasta [pilon] Writing NODE_9934_length_328_cov_21.758454:1-328 changes to pilon.changes [pilon] Writing updated NODE_9934_length_328_cov_21.758454_pilon to pilon.fasta [pilon] Writing NODE_9935_length_328_cov_18.521739:1-328 changes to pilon.changes [pilon] Writing updated NODE_9935_length_328_cov_18.521739_pilon to pilon.fasta [pilon] Writing NODE_9936_length_328_cov_17.246377:1-328 changes to pilon.changes [pilon] Writing updated NODE_9936_length_328_cov_17.246377_pilon to pilon.fasta [pilon] Writing NODE_9937_length_328_cov_15.908213:1-328 changes to pilon.changes [pilon] Writing updated NODE_9937_length_328_cov_15.908213_pilon to pilon.fasta [pilon] Writing NODE_9938_length_328_cov_14.874396:1-328 changes to pilon.changes [pilon] Writing updated NODE_9938_length_328_cov_14.874396_pilon to pilon.fasta [pilon] Writing NODE_9939_length_328_cov_12.347826:1-328 changes to pilon.changes [pilon] Writing updated NODE_9939_length_328_cov_12.347826_pilon to pilon.fasta [pilon] Writing NODE_9940_length_328_cov_12.260870:1-328 changes to pilon.changes [pilon] Writing updated NODE_9940_length_328_cov_12.260870_pilon to pilon.fasta [pilon] Writing NODE_9941_length_328_cov_8.550725:1-328 changes to pilon.changes [pilon] Writing updated NODE_9941_length_328_cov_8.550725_pilon to pilon.fasta [pilon] Writing NODE_9942_length_328_cov_8.072464:1-328 changes to pilon.changes [pilon] Writing updated NODE_9942_length_328_cov_8.072464_pilon to pilon.fasta [pilon] Writing NODE_9943_length_328_cov_5.212560:1-328 changes to pilon.changes [pilon] Writing updated NODE_9943_length_328_cov_5.212560_pilon to pilon.fasta [pilon] Writing NODE_9944_length_327_cov_61.237864:1-327 changes to pilon.changes [pilon] Writing updated NODE_9944_length_327_cov_61.237864_pilon to pilon.fasta [pilon] Writing NODE_9945_length_327_cov_54.417476:1-327 changes to pilon.changes [pilon] Writing updated NODE_9945_length_327_cov_54.417476_pilon to pilon.fasta [pilon] Writing NODE_9946_length_327_cov_42.330097:1-327 changes to pilon.changes [pilon] Writing updated NODE_9946_length_327_cov_42.330097_pilon to pilon.fasta [pilon] Writing NODE_9947_length_327_cov_37.674757:1-327 changes to pilon.changes [pilon] Writing updated NODE_9947_length_327_cov_37.674757_pilon to pilon.fasta [pilon] Writing NODE_9948_length_327_cov_35.237864:1-327 changes to pilon.changes [pilon] Writing updated NODE_9948_length_327_cov_35.237864_pilon to pilon.fasta [pilon] Writing NODE_9949_length_327_cov_32.349515:1-327 changes to pilon.changes [pilon] Writing updated NODE_9949_length_327_cov_32.349515_pilon to pilon.fasta [pilon] Writing NODE_9950_length_327_cov_31.577670:1-327 changes to pilon.changes [pilon] Writing updated NODE_9950_length_327_cov_31.577670_pilon to pilon.fasta [pilon] Writing NODE_9951_length_327_cov_30.373786:1-327 changes to pilon.changes [pilon] Writing updated NODE_9951_length_327_cov_30.373786_pilon to pilon.fasta [pilon] Writing NODE_9952_length_327_cov_29.063107:1-327 changes to pilon.changes [pilon] Writing updated NODE_9952_length_327_cov_29.063107_pilon to pilon.fasta [pilon] Writing NODE_9953_length_327_cov_25.975728:1-327 changes to pilon.changes [pilon] Writing updated NODE_9953_length_327_cov_25.975728_pilon to pilon.fasta [pilon] Writing NODE_9954_length_327_cov_25.713592:1-327 changes to pilon.changes [pilon] Writing updated NODE_9954_length_327_cov_25.713592_pilon to pilon.fasta [pilon] Writing NODE_9955_length_327_cov_25.126214:1-327 changes to pilon.changes [pilon] Writing updated NODE_9955_length_327_cov_25.126214_pilon to pilon.fasta [pilon] Writing NODE_9956_length_327_cov_23.839806:1-327 changes to pilon.changes [pilon] Writing updated NODE_9956_length_327_cov_23.839806_pilon to pilon.fasta [pilon] Writing NODE_9957_length_327_cov_22.669903:1-327 changes to pilon.changes [pilon] Writing updated NODE_9957_length_327_cov_22.669903_pilon to pilon.fasta [pilon] Writing NODE_9958_length_327_cov_22.441748:1-327 changes to pilon.changes [pilon] Writing updated NODE_9958_length_327_cov_22.441748_pilon to pilon.fasta [pilon] Writing NODE_9959_length_327_cov_21.519417:1-327 changes to pilon.changes [pilon] Writing updated NODE_9959_length_327_cov_21.519417_pilon to pilon.fasta [pilon] Writing NODE_9960_length_327_cov_20.708738:1-327 changes to pilon.changes [pilon] Writing updated NODE_9960_length_327_cov_20.708738_pilon to pilon.fasta [pilon] Writing NODE_9961_length_327_cov_20.077670:1-327 changes to pilon.changes [pilon] Writing updated NODE_9961_length_327_cov_20.077670_pilon to pilon.fasta [pilon] Writing NODE_9962_length_327_cov_20.019417:1-327 changes to pilon.changes [pilon] Writing updated NODE_9962_length_327_cov_20.019417_pilon to pilon.fasta [pilon] Writing NODE_9963_length_327_cov_19.834951:1-327 changes to pilon.changes [pilon] Writing updated NODE_9963_length_327_cov_19.834951_pilon to pilon.fasta [pilon] Writing NODE_9964_length_327_cov_19.063107:1-327 changes to pilon.changes [pilon] Writing updated NODE_9964_length_327_cov_19.063107_pilon to pilon.fasta [pilon] Writing NODE_9965_length_327_cov_18.898058:1-327 changes to pilon.changes [pilon] Writing updated NODE_9965_length_327_cov_18.898058_pilon to pilon.fasta [pilon] Writing NODE_9966_length_327_cov_18.796117:1-327 changes to pilon.changes [pilon] Writing updated NODE_9966_length_327_cov_18.796117_pilon to pilon.fasta [pilon] Writing NODE_9967_length_327_cov_18.058252:1-327 changes to pilon.changes [pilon] Writing updated NODE_9967_length_327_cov_18.058252_pilon to pilon.fasta [pilon] Writing NODE_9968_length_327_cov_17.271845:1-327 changes to pilon.changes [pilon] Writing updated NODE_9968_length_327_cov_17.271845_pilon to pilon.fasta [pilon] Writing NODE_9969_length_327_cov_15.936893:1-327 changes to pilon.changes [pilon] Writing updated NODE_9969_length_327_cov_15.936893_pilon to pilon.fasta [pilon] Writing NODE_9970_length_327_cov_15.393204:1-327 changes to pilon.changes [pilon] Writing updated NODE_9970_length_327_cov_15.393204_pilon to pilon.fasta [pilon] Writing NODE_9971_length_327_cov_14.645631:1-327 changes to pilon.changes [pilon] Writing updated NODE_9971_length_327_cov_14.645631_pilon to pilon.fasta [pilon] Writing NODE_9972_length_327_cov_14.291262:1-327 changes to pilon.changes [pilon] Writing updated NODE_9972_length_327_cov_14.291262_pilon to pilon.fasta [pilon] Writing NODE_9973_length_327_cov_13.228155:1-327 changes to pilon.changes [pilon] Writing updated NODE_9973_length_327_cov_13.228155_pilon to pilon.fasta [pilon] Writing NODE_9974_length_327_cov_12.985437:1-327 changes to pilon.changes [pilon] Writing updated NODE_9974_length_327_cov_12.985437_pilon to pilon.fasta [pilon] Writing NODE_9975_length_327_cov_12.733010:1-327 changes to pilon.changes [pilon] Writing updated NODE_9975_length_327_cov_12.733010_pilon to pilon.fasta [pilon] Writing NODE_9976_length_327_cov_12.407767:1-327 changes to pilon.changes [pilon] Writing updated NODE_9976_length_327_cov_12.407767_pilon to pilon.fasta [pilon] Writing NODE_9977_length_327_cov_12.106796:1-327 changes to pilon.changes [pilon] Writing updated NODE_9977_length_327_cov_12.106796_pilon to pilon.fasta [pilon] Writing NODE_9978_length_327_cov_10.660194:1-327 changes to pilon.changes [pilon] Writing updated NODE_9978_length_327_cov_10.660194_pilon to pilon.fasta [pilon] Writing NODE_9979_length_327_cov_10.233010:1-327 changes to pilon.changes [pilon] Writing updated NODE_9979_length_327_cov_10.233010_pilon to pilon.fasta [pilon] Writing NODE_9980_length_327_cov_8.485437:1-327 changes to pilon.changes [pilon] Writing updated NODE_9980_length_327_cov_8.485437_pilon to pilon.fasta [pilon] Writing NODE_9981_length_327_cov_7.893204:1-327 changes to pilon.changes [pilon] Writing updated NODE_9981_length_327_cov_7.893204_pilon to pilon.fasta [pilon] Writing NODE_9982_length_327_cov_7.208738:1-327 changes to pilon.changes [pilon] Writing updated NODE_9982_length_327_cov_7.208738_pilon to pilon.fasta [pilon] Writing NODE_9983_length_327_cov_7.121359:1-327 changes to pilon.changes [pilon] Writing updated NODE_9983_length_327_cov_7.121359_pilon to pilon.fasta [pilon] Writing NODE_9984_length_326_cov_44.585366:1-326 changes to pilon.changes [pilon] Writing updated NODE_9984_length_326_cov_44.585366_pilon to pilon.fasta [pilon] Writing NODE_9985_length_326_cov_36.234146:1-326 changes to pilon.changes [pilon] Writing updated NODE_9985_length_326_cov_36.234146_pilon to pilon.fasta [pilon] Writing NODE_9986_length_326_cov_21.385366:1-326 changes to pilon.changes [pilon] Writing updated NODE_9986_length_326_cov_21.385366_pilon to pilon.fasta [pilon] Writing NODE_9987_length_326_cov_20.634146:1-326 changes to pilon.changes [pilon] Writing updated NODE_9987_length_326_cov_20.634146_pilon to pilon.fasta [pilon] Writing NODE_9988_length_326_cov_20.614634:1-326 changes to pilon.changes [pilon] Writing updated NODE_9988_length_326_cov_20.614634_pilon to pilon.fasta [pilon] Writing NODE_9989_length_326_cov_20.600000:1-326 changes to pilon.changes [pilon] Writing updated NODE_9989_length_326_cov_20.600000_pilon to pilon.fasta [pilon] Writing NODE_9990_length_326_cov_19.565854:1-326 changes to pilon.changes [pilon] Writing updated NODE_9990_length_326_cov_19.565854_pilon to pilon.fasta [pilon] Writing NODE_9991_length_326_cov_18.278049:1-326 changes to pilon.changes [pilon] Writing updated NODE_9991_length_326_cov_18.278049_pilon to pilon.fasta [pilon] Writing NODE_9992_length_326_cov_16.434146:1-326 changes to pilon.changes [pilon] Writing updated NODE_9992_length_326_cov_16.434146_pilon to pilon.fasta [pilon] Writing NODE_9993_length_326_cov_14.517073:1-326 changes to pilon.changes [pilon] Writing updated NODE_9993_length_326_cov_14.517073_pilon to pilon.fasta [pilon] Writing NODE_9994_length_326_cov_11.590244:1-326 changes to pilon.changes [pilon] Writing updated NODE_9994_length_326_cov_11.590244_pilon to pilon.fasta [pilon] Writing NODE_9995_length_326_cov_9.721951:1-326 changes to pilon.changes [pilon] Writing updated NODE_9995_length_326_cov_9.721951_pilon to pilon.fasta [pilon] Writing NODE_9996_length_326_cov_7.029268:1-326 changes to pilon.changes [pilon] Writing updated NODE_9996_length_326_cov_7.029268_pilon to pilon.fasta [pilon] Writing NODE_9997_length_326_cov_6.970732:1-326 changes to pilon.changes [pilon] Writing updated NODE_9997_length_326_cov_6.970732_pilon to pilon.fasta [pilon] Writing NODE_9998_length_325_cov_23.490196:1-325 changes to pilon.changes [pilon] Writing updated NODE_9998_length_325_cov_23.490196_pilon to pilon.fasta [pilon] Writing NODE_9999_length_325_cov_22.799020:1-325 changes to pilon.changes [pilon] Writing updated NODE_9999_length_325_cov_22.799020_pilon to pilon.fasta [pilon] Writing NODE_10000_length_325_cov_21.936275:1-325 changes to pilon.changes [pilon] Writing updated NODE_10000_length_325_cov_21.936275_pilon to pilon.fasta [pilon] Writing NODE_10001_length_325_cov_21.764706:1-325 changes to pilon.changes [pilon] Writing updated NODE_10001_length_325_cov_21.764706_pilon to pilon.fasta [pilon] Writing NODE_10002_length_325_cov_15.465686:1-325 changes to pilon.changes [pilon] Writing updated NODE_10002_length_325_cov_15.465686_pilon to pilon.fasta [pilon] Writing NODE_10003_length_325_cov_14.691176:1-325 changes to pilon.changes [pilon] Writing updated NODE_10003_length_325_cov_14.691176_pilon to pilon.fasta [pilon] Writing NODE_10004_length_325_cov_12.799020:1-325 changes to pilon.changes [pilon] Writing updated NODE_10004_length_325_cov_12.799020_pilon to pilon.fasta [pilon] Writing NODE_10005_length_325_cov_8.333333:1-325 changes to pilon.changes [pilon] Writing updated NODE_10005_length_325_cov_8.333333_pilon to pilon.fasta [pilon] Writing NODE_10006_length_325_cov_8.000000:1-325 changes to pilon.changes [pilon] Writing updated NODE_10006_length_325_cov_8.000000_pilon to pilon.fasta [pilon] Writing NODE_10007_length_324_cov_39.935961:1-324 changes to pilon.changes [pilon] Writing updated NODE_10007_length_324_cov_39.935961_pilon to pilon.fasta [pilon] Writing NODE_10008_length_324_cov_35.876847:1-324 changes to pilon.changes [pilon] Writing updated NODE_10008_length_324_cov_35.876847_pilon to pilon.fasta [pilon] Writing NODE_10009_length_324_cov_32.487685:1-324 changes to pilon.changes [pilon] Writing updated NODE_10009_length_324_cov_32.487685_pilon to pilon.fasta [pilon] Writing NODE_10010_length_324_cov_31.433498:1-324 changes to pilon.changes [pilon] Writing updated NODE_10010_length_324_cov_31.433498_pilon to pilon.fasta [pilon] Writing NODE_10011_length_324_cov_31.369458:1-324 changes to pilon.changes [pilon] Writing updated NODE_10011_length_324_cov_31.369458_pilon to pilon.fasta [pilon] Writing NODE_10012_length_324_cov_29.635468:1-324 changes to pilon.changes [pilon] Writing updated NODE_10012_length_324_cov_29.635468_pilon to pilon.fasta [pilon] Writing NODE_10013_length_324_cov_28.187192:1-324 changes to pilon.changes [pilon] Writing updated NODE_10013_length_324_cov_28.187192_pilon to pilon.fasta [pilon] Writing NODE_10014_length_324_cov_28.049261:1-324 changes to pilon.changes [pilon] Writing updated NODE_10014_length_324_cov_28.049261_pilon to pilon.fasta [pilon] Writing NODE_10015_length_324_cov_27.004926:1-324 changes to pilon.changes [pilon] Writing updated NODE_10015_length_324_cov_27.004926_pilon to pilon.fasta [pilon] Writing NODE_10016_length_324_cov_26.694581:1-324 changes to pilon.changes [pilon] Writing updated NODE_10016_length_324_cov_26.694581_pilon to pilon.fasta [pilon] Writing NODE_10017_length_324_cov_24.886700:1-324 changes to pilon.changes [pilon] Writing updated NODE_10017_length_324_cov_24.886700_pilon to pilon.fasta [pilon] Writing NODE_10018_length_324_cov_24.660099:1-324 changes to pilon.changes [pilon] Writing updated NODE_10018_length_324_cov_24.660099_pilon to pilon.fasta [pilon] Writing NODE_10019_length_324_cov_24.019704:1-324 changes to pilon.changes [pilon] Writing updated NODE_10019_length_324_cov_24.019704_pilon to pilon.fasta [pilon] Writing NODE_10020_length_324_cov_23.975369:1-324 changes to pilon.changes [pilon] Writing updated NODE_10020_length_324_cov_23.975369_pilon to pilon.fasta [pilon] Writing NODE_10021_length_324_cov_23.822660:1-324 changes to pilon.changes [pilon] Writing updated NODE_10021_length_324_cov_23.822660_pilon to pilon.fasta [pilon] Writing NODE_10022_length_324_cov_23.433498:1-324 changes to pilon.changes [pilon] Writing updated NODE_10022_length_324_cov_23.433498_pilon to pilon.fasta [pilon] Writing NODE_10023_length_324_cov_22.591133:1-324 changes to pilon.changes [pilon] Writing updated NODE_10023_length_324_cov_22.591133_pilon to pilon.fasta [pilon] Writing NODE_10024_length_324_cov_22.458128:1-324 changes to pilon.changes [pilon] Writing updated NODE_10024_length_324_cov_22.458128_pilon to pilon.fasta [pilon] Writing NODE_10025_length_324_cov_22.339901:1-324 changes to pilon.changes [pilon] Writing updated NODE_10025_length_324_cov_22.339901_pilon to pilon.fasta [pilon] Writing NODE_10026_length_324_cov_22.172414:1-324 changes to pilon.changes [pilon] Writing updated NODE_10026_length_324_cov_22.172414_pilon to pilon.fasta [pilon] Writing NODE_10027_length_324_cov_22.068966:1-324 changes to pilon.changes [pilon] Writing updated NODE_10027_length_324_cov_22.068966_pilon to pilon.fasta [pilon] Writing NODE_10028_length_324_cov_21.049261:1-324 changes to pilon.changes [pilon] Writing updated NODE_10028_length_324_cov_21.049261_pilon to pilon.fasta [pilon] Writing NODE_10029_length_324_cov_18.078818:1-324 changes to pilon.changes [pilon] Writing updated NODE_10029_length_324_cov_18.078818_pilon to pilon.fasta [pilon] Writing NODE_10030_length_324_cov_17.674877:1-324 changes to pilon.changes [pilon] Writing updated NODE_10030_length_324_cov_17.674877_pilon to pilon.fasta [pilon] Writing NODE_10031_length_324_cov_17.241379:1-324 changes to pilon.changes [pilon] Writing updated NODE_10031_length_324_cov_17.241379_pilon to pilon.fasta [pilon] Writing NODE_10032_length_324_cov_16.916256:1-324 changes to pilon.changes [pilon] Writing updated NODE_10032_length_324_cov_16.916256_pilon to pilon.fasta [pilon] Writing NODE_10033_length_324_cov_16.453202:1-324 changes to pilon.changes [pilon] Writing updated NODE_10033_length_324_cov_16.453202_pilon to pilon.fasta [pilon] Writing NODE_10034_length_324_cov_16.088670:1-324 changes to pilon.changes [pilon] Writing updated NODE_10034_length_324_cov_16.088670_pilon to pilon.fasta [pilon] Writing NODE_10035_length_324_cov_15.620690:1-324 changes to pilon.changes [pilon] Writing updated NODE_10035_length_324_cov_15.620690_pilon to pilon.fasta [pilon] Writing NODE_10036_length_324_cov_14.443350:1-324 changes to pilon.changes [pilon] Writing updated NODE_10036_length_324_cov_14.443350_pilon to pilon.fasta [pilon] Writing NODE_10037_length_324_cov_14.330049:1-324 changes to pilon.changes [pilon] Writing updated NODE_10037_length_324_cov_14.330049_pilon to pilon.fasta [pilon] Writing NODE_10038_length_324_cov_13.221675:1-324 changes to pilon.changes [pilon] Writing updated NODE_10038_length_324_cov_13.221675_pilon to pilon.fasta [pilon] Writing NODE_10039_length_324_cov_13.083744:1-324 changes to pilon.changes [pilon] Writing updated NODE_10039_length_324_cov_13.083744_pilon to pilon.fasta [pilon] Writing NODE_10040_length_324_cov_12.733990:1-324 changes to pilon.changes [pilon] Writing updated NODE_10040_length_324_cov_12.733990_pilon to pilon.fasta [pilon] Writing NODE_10041_length_324_cov_11.591133:1-324 changes to pilon.changes [pilon] Writing updated NODE_10041_length_324_cov_11.591133_pilon to pilon.fasta [pilon] Writing NODE_10042_length_324_cov_11.463054:1-324 changes to pilon.changes [pilon] Writing updated NODE_10042_length_324_cov_11.463054_pilon to pilon.fasta [pilon] Writing NODE_10043_length_324_cov_10.000000:1-324 changes to pilon.changes [pilon] Writing updated NODE_10043_length_324_cov_10.000000_pilon to pilon.fasta [pilon] Writing NODE_10044_length_324_cov_9.039409:1-324 changes to pilon.changes [pilon] Writing updated NODE_10044_length_324_cov_9.039409_pilon to pilon.fasta [pilon] Writing NODE_10045_length_324_cov_7.793103:1-324 changes to pilon.changes [pilon] Writing updated NODE_10045_length_324_cov_7.793103_pilon to pilon.fasta [pilon] Writing NODE_10046_length_323_cov_62.252475:1-323 changes to pilon.changes [pilon] Writing updated NODE_10046_length_323_cov_62.252475_pilon to pilon.fasta [pilon] Writing NODE_10047_length_323_cov_56.054455:1-323 changes to pilon.changes [pilon] Writing updated NODE_10047_length_323_cov_56.054455_pilon to pilon.fasta [pilon] Writing NODE_10048_length_323_cov_54.594059:1-323 changes to pilon.changes [pilon] Writing updated NODE_10048_length_323_cov_54.594059_pilon to pilon.fasta [pilon] Writing NODE_10049_length_323_cov_39.341584:1-323 changes to pilon.changes [pilon] Writing updated NODE_10049_length_323_cov_39.341584_pilon to pilon.fasta [pilon] Writing NODE_10050_length_323_cov_30.801980:1-323 changes to pilon.changes [pilon] Writing updated NODE_10050_length_323_cov_30.801980_pilon to pilon.fasta [pilon] Writing NODE_10051_length_323_cov_29.064356:1-323 changes to pilon.changes [pilon] Writing updated NODE_10051_length_323_cov_29.064356_pilon to pilon.fasta [pilon] Writing NODE_10052_length_323_cov_22.801980:1-323 changes to pilon.changes [pilon] Writing updated NODE_10052_length_323_cov_22.801980_pilon to pilon.fasta [pilon] Writing NODE_10053_length_323_cov_21.841584:1-323 changes to pilon.changes [pilon] Writing updated NODE_10053_length_323_cov_21.841584_pilon to pilon.fasta [pilon] Writing NODE_10054_length_323_cov_19.990099:1-323 changes to pilon.changes [pilon] Writing updated NODE_10054_length_323_cov_19.990099_pilon to pilon.fasta [pilon] Writing NODE_10055_length_323_cov_18.613861:1-323 changes to pilon.changes [pilon] Writing updated NODE_10055_length_323_cov_18.613861_pilon to pilon.fasta [pilon] Writing NODE_10056_length_323_cov_18.450495:1-323 changes to pilon.changes [pilon] Writing updated NODE_10056_length_323_cov_18.450495_pilon to pilon.fasta [pilon] Writing NODE_10057_length_323_cov_16.198020:1-323 changes to pilon.changes [pilon] Writing updated NODE_10057_length_323_cov_16.198020_pilon to pilon.fasta [pilon] Writing NODE_10058_length_323_cov_15.034653:1-323 changes to pilon.changes [pilon] Writing updated NODE_10058_length_323_cov_15.034653_pilon to pilon.fasta [pilon] Writing NODE_10059_length_323_cov_13.742574:1-323 changes to pilon.changes [pilon] Writing updated NODE_10059_length_323_cov_13.742574_pilon to pilon.fasta [pilon] Writing NODE_10060_length_323_cov_12.856436:1-323 changes to pilon.changes [pilon] Writing updated NODE_10060_length_323_cov_12.856436_pilon to pilon.fasta [pilon] Writing NODE_10061_length_323_cov_11.608911:1-323 changes to pilon.changes [pilon] Writing updated NODE_10061_length_323_cov_11.608911_pilon to pilon.fasta [pilon] Writing NODE_10062_length_323_cov_11.282178:1-323 changes to pilon.changes [pilon] Writing updated NODE_10062_length_323_cov_11.282178_pilon to pilon.fasta [pilon] Writing NODE_10063_length_323_cov_10.534653:1-323 changes to pilon.changes [pilon] Writing updated NODE_10063_length_323_cov_10.534653_pilon to pilon.fasta [pilon] Writing NODE_10064_length_323_cov_8.965347:1-323 changes to pilon.changes [pilon] Writing updated NODE_10064_length_323_cov_8.965347_pilon to pilon.fasta [pilon] Writing NODE_10065_length_323_cov_8.688119:1-323 changes to pilon.changes [pilon] Writing updated NODE_10065_length_323_cov_8.688119_pilon to pilon.fasta [pilon] Writing NODE_10066_length_323_cov_8.450495:1-323 changes to pilon.changes [pilon] Writing updated NODE_10066_length_323_cov_8.450495_pilon to pilon.fasta [pilon] Writing NODE_10067_length_323_cov_7.485149:1-323 changes to pilon.changes [pilon] Writing updated NODE_10067_length_323_cov_7.485149_pilon to pilon.fasta [pilon] Writing NODE_10068_length_323_cov_4.801980:1-323 changes to pilon.changes [pilon] Writing updated NODE_10068_length_323_cov_4.801980_pilon to pilon.fasta [pilon] Writing NODE_10069_length_322_cov_52.368159:1-322 changes to pilon.changes [pilon] Writing updated NODE_10069_length_322_cov_52.368159_pilon to pilon.fasta [pilon] Writing NODE_10070_length_322_cov_25.089552:1-322 changes to pilon.changes [pilon] Writing updated NODE_10070_length_322_cov_25.089552_pilon to pilon.fasta [pilon] Writing NODE_10071_length_322_cov_23.711443:1-322 changes to pilon.changes [pilon] Writing updated NODE_10071_length_322_cov_23.711443_pilon to pilon.fasta [pilon] Writing NODE_10072_length_322_cov_22.955224:1-322 changes to pilon.changes [pilon] Writing updated NODE_10072_length_322_cov_22.955224_pilon to pilon.fasta [pilon] Writing NODE_10073_length_322_cov_16.228856:1-322 changes to pilon.changes [pilon] Writing updated NODE_10073_length_322_cov_16.228856_pilon to pilon.fasta [pilon] Writing NODE_10074_length_322_cov_15.582090:1-322 changes to pilon.changes [pilon] Writing updated NODE_10074_length_322_cov_15.582090_pilon to pilon.fasta [pilon] Writing NODE_10075_length_322_cov_15.094527:1-322 changes to pilon.changes [pilon] Writing updated NODE_10075_length_322_cov_15.094527_pilon to pilon.fasta [pilon] Writing NODE_10076_length_322_cov_14.218905:1-322 changes to pilon.changes [pilon] Writing updated NODE_10076_length_322_cov_14.218905_pilon to pilon.fasta [pilon] Writing NODE_10077_length_322_cov_13.358209:1-322 changes to pilon.changes [pilon] Writing updated NODE_10077_length_322_cov_13.358209_pilon to pilon.fasta [pilon] Writing NODE_10078_length_322_cov_12.850746:1-322 changes to pilon.changes [pilon] Writing updated NODE_10078_length_322_cov_12.850746_pilon to pilon.fasta [pilon] Writing NODE_10079_length_322_cov_12.179104:1-322 changes to pilon.changes [pilon] Writing updated NODE_10079_length_322_cov_12.179104_pilon to pilon.fasta [pilon] Writing NODE_10080_length_322_cov_10.696517:1-322 changes to pilon.changes [pilon] Writing updated NODE_10080_length_322_cov_10.696517_pilon to pilon.fasta [pilon] Writing NODE_10081_length_321_cov_37.935000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10081_length_321_cov_37.935000_pilon to pilon.fasta [pilon] Writing NODE_10082_length_321_cov_36.605000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10082_length_321_cov_36.605000_pilon to pilon.fasta [pilon] Writing NODE_10083_length_321_cov_32.730000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10083_length_321_cov_32.730000_pilon to pilon.fasta [pilon] Writing NODE_10084_length_321_cov_29.020000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10084_length_321_cov_29.020000_pilon to pilon.fasta [pilon] Writing NODE_10085_length_321_cov_28.250000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10085_length_321_cov_28.250000_pilon to pilon.fasta [pilon] Writing NODE_10086_length_321_cov_26.660000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10086_length_321_cov_26.660000_pilon to pilon.fasta [pilon] Writing NODE_10087_length_321_cov_25.660000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10087_length_321_cov_25.660000_pilon to pilon.fasta [pilon] Writing NODE_10088_length_321_cov_25.460000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10088_length_321_cov_25.460000_pilon to pilon.fasta [pilon] Writing NODE_10089_length_321_cov_23.985000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10089_length_321_cov_23.985000_pilon to pilon.fasta [pilon] Writing NODE_10090_length_321_cov_23.575000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10090_length_321_cov_23.575000_pilon to pilon.fasta [pilon] Writing NODE_10091_length_321_cov_22.890000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10091_length_321_cov_22.890000_pilon to pilon.fasta [pilon] Writing NODE_10092_length_321_cov_22.835000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10092_length_321_cov_22.835000_pilon to pilon.fasta [pilon] Writing NODE_10093_length_321_cov_22.215000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10093_length_321_cov_22.215000_pilon to pilon.fasta [pilon] Writing NODE_10094_length_321_cov_20.830000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10094_length_321_cov_20.830000_pilon to pilon.fasta [pilon] Writing NODE_10095_length_321_cov_20.765000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10095_length_321_cov_20.765000_pilon to pilon.fasta [pilon] Writing NODE_10096_length_321_cov_20.095000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10096_length_321_cov_20.095000_pilon to pilon.fasta [pilon] Writing NODE_10097_length_321_cov_19.770000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10097_length_321_cov_19.770000_pilon to pilon.fasta [pilon] Writing NODE_10098_length_321_cov_19.685000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10098_length_321_cov_19.685000_pilon to pilon.fasta [pilon] Writing NODE_10099_length_321_cov_19.655000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10099_length_321_cov_19.655000_pilon to pilon.fasta [pilon] Writing NODE_10100_length_321_cov_19.520000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10100_length_321_cov_19.520000_pilon to pilon.fasta [pilon] Writing NODE_10101_length_321_cov_19.450000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10101_length_321_cov_19.450000_pilon to pilon.fasta [pilon] Writing NODE_10102_length_321_cov_19.105000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10102_length_321_cov_19.105000_pilon to pilon.fasta [pilon] Writing NODE_10103_length_321_cov_18.360000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10103_length_321_cov_18.360000_pilon to pilon.fasta [pilon] Writing NODE_10104_length_321_cov_17.805000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10104_length_321_cov_17.805000_pilon to pilon.fasta [pilon] Writing NODE_10105_length_321_cov_17.785000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10105_length_321_cov_17.785000_pilon to pilon.fasta [pilon] Writing NODE_10106_length_321_cov_17.450000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10106_length_321_cov_17.450000_pilon to pilon.fasta [pilon] Writing NODE_10107_length_321_cov_17.350000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10107_length_321_cov_17.350000_pilon to pilon.fasta [pilon] Writing NODE_10108_length_321_cov_16.195000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10108_length_321_cov_16.195000_pilon to pilon.fasta [pilon] Writing NODE_10109_length_321_cov_15.950000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10109_length_321_cov_15.950000_pilon to pilon.fasta [pilon] Writing NODE_10110_length_321_cov_15.635000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10110_length_321_cov_15.635000_pilon to pilon.fasta [pilon] Writing NODE_10111_length_321_cov_15.125000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10111_length_321_cov_15.125000_pilon to pilon.fasta [pilon] Writing NODE_10112_length_321_cov_14.675000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10112_length_321_cov_14.675000_pilon to pilon.fasta [pilon] Writing NODE_10113_length_321_cov_14.430000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10113_length_321_cov_14.430000_pilon to pilon.fasta [pilon] Writing NODE_10114_length_321_cov_13.845000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10114_length_321_cov_13.845000_pilon to pilon.fasta [pilon] Writing NODE_10115_length_321_cov_13.205000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10115_length_321_cov_13.205000_pilon to pilon.fasta [pilon] Writing NODE_10116_length_321_cov_11.990000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10116_length_321_cov_11.990000_pilon to pilon.fasta [pilon] Writing NODE_10117_length_321_cov_11.820000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10117_length_321_cov_11.820000_pilon to pilon.fasta [pilon] Writing NODE_10118_length_321_cov_11.405000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10118_length_321_cov_11.405000_pilon to pilon.fasta [pilon] Writing NODE_10119_length_321_cov_11.365000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10119_length_321_cov_11.365000_pilon to pilon.fasta [pilon] Writing NODE_10120_length_321_cov_10.740000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10120_length_321_cov_10.740000_pilon to pilon.fasta [pilon] Writing NODE_10121_length_321_cov_10.665000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10121_length_321_cov_10.665000_pilon to pilon.fasta [pilon] Writing NODE_10122_length_321_cov_10.010000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10122_length_321_cov_10.010000_pilon to pilon.fasta [pilon] Writing NODE_10123_length_321_cov_9.625000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10123_length_321_cov_9.625000_pilon to pilon.fasta [pilon] Writing NODE_10124_length_321_cov_9.140000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10124_length_321_cov_9.140000_pilon to pilon.fasta [pilon] Writing NODE_10125_length_321_cov_9.115000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10125_length_321_cov_9.115000_pilon to pilon.fasta [pilon] Writing NODE_10126_length_321_cov_8.035000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10126_length_321_cov_8.035000_pilon to pilon.fasta [pilon] Writing NODE_10127_length_321_cov_7.695000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10127_length_321_cov_7.695000_pilon to pilon.fasta [pilon] Writing NODE_10128_length_321_cov_5.865000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10128_length_321_cov_5.865000_pilon to pilon.fasta [pilon] Writing NODE_10129_length_321_cov_5.745000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10129_length_321_cov_5.745000_pilon to pilon.fasta [pilon] Writing NODE_10130_length_321_cov_5.635000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10130_length_321_cov_5.635000_pilon to pilon.fasta [pilon] Writing NODE_10131_length_321_cov_3.635000:1-321 changes to pilon.changes [pilon] Writing updated NODE_10131_length_321_cov_3.635000_pilon to pilon.fasta [pilon] Writing NODE_10132_length_320_cov_53.145729:1-320 changes to pilon.changes [pilon] Writing updated NODE_10132_length_320_cov_53.145729_pilon to pilon.fasta [pilon] Writing NODE_10133_length_320_cov_44.944724:1-320 changes to pilon.changes [pilon] Writing updated NODE_10133_length_320_cov_44.944724_pilon to pilon.fasta [pilon] Writing NODE_10134_length_320_cov_41.894472:1-320 changes to pilon.changes [pilon] Writing updated NODE_10134_length_320_cov_41.894472_pilon to pilon.fasta [pilon] Writing NODE_10135_length_320_cov_38.045226:1-320 changes to pilon.changes [pilon] Writing updated NODE_10135_length_320_cov_38.045226_pilon to pilon.fasta [pilon] Writing NODE_10136_length_320_cov_36.979899:1-320 changes to pilon.changes [pilon] Writing updated NODE_10136_length_320_cov_36.979899_pilon to pilon.fasta [pilon] Writing NODE_10137_length_320_cov_35.608040:1-320 changes to pilon.changes [pilon] Writing updated NODE_10137_length_320_cov_35.608040_pilon to pilon.fasta [pilon] Writing NODE_10138_length_320_cov_30.582915:1-320 changes to pilon.changes [pilon] Writing updated NODE_10138_length_320_cov_30.582915_pilon to pilon.fasta [pilon] Writing NODE_10139_length_320_cov_28.884422:1-320 changes to pilon.changes [pilon] Writing updated NODE_10139_length_320_cov_28.884422_pilon to pilon.fasta [pilon] Writing NODE_10140_length_320_cov_26.517588:1-320 changes to pilon.changes [pilon] Writing updated NODE_10140_length_320_cov_26.517588_pilon to pilon.fasta [pilon] Writing NODE_10141_length_320_cov_21.693467:1-320 changes to pilon.changes [pilon] Writing updated NODE_10141_length_320_cov_21.693467_pilon to pilon.fasta [pilon] Writing NODE_10142_length_320_cov_19.472362:1-320 changes to pilon.changes [pilon] Writing updated NODE_10142_length_320_cov_19.472362_pilon to pilon.fasta [pilon] Writing NODE_10143_length_320_cov_17.728643:1-320 changes to pilon.changes [pilon] Writing updated NODE_10143_length_320_cov_17.728643_pilon to pilon.fasta [pilon] Writing NODE_10144_length_320_cov_13.326633:1-320 changes to pilon.changes [pilon] Writing updated NODE_10144_length_320_cov_13.326633_pilon to pilon.fasta [pilon] Writing NODE_10145_length_320_cov_12.859296:1-320 changes to pilon.changes [pilon] Writing updated NODE_10145_length_320_cov_12.859296_pilon to pilon.fasta [pilon] Writing NODE_10146_length_320_cov_8.597990:1-320 changes to pilon.changes [pilon] Writing updated NODE_10146_length_320_cov_8.597990_pilon to pilon.fasta [pilon] Writing NODE_10147_length_319_cov_37.535354:1-319 changes to pilon.changes [pilon] Writing updated NODE_10147_length_319_cov_37.535354_pilon to pilon.fasta [pilon] Writing NODE_10148_length_319_cov_32.232323:1-319 changes to pilon.changes [pilon] Writing updated NODE_10148_length_319_cov_32.232323_pilon to pilon.fasta [pilon] Writing NODE_10149_length_319_cov_28.944444:1-319 changes to pilon.changes [pilon] Writing updated NODE_10149_length_319_cov_28.944444_pilon to pilon.fasta [pilon] Writing NODE_10150_length_319_cov_24.813131:1-319 changes to pilon.changes [pilon] Writing updated NODE_10150_length_319_cov_24.813131_pilon to pilon.fasta [pilon] Writing NODE_10151_length_319_cov_19.833333:1-319 changes to pilon.changes [pilon] Writing updated NODE_10151_length_319_cov_19.833333_pilon to pilon.fasta [pilon] Writing NODE_10152_length_319_cov_19.686869:1-319 changes to pilon.changes [pilon] Writing updated NODE_10152_length_319_cov_19.686869_pilon to pilon.fasta [pilon] Writing NODE_10153_length_319_cov_11.828283:1-319 changes to pilon.changes [pilon] Writing updated NODE_10153_length_319_cov_11.828283_pilon to pilon.fasta [pilon] Writing NODE_10154_length_319_cov_7.424242:1-319 changes to pilon.changes [pilon] Writing updated NODE_10154_length_319_cov_7.424242_pilon to pilon.fasta [pilon] Writing NODE_10155_length_318_cov_80.776650:1-318 changes to pilon.changes [pilon] Writing updated NODE_10155_length_318_cov_80.776650_pilon to pilon.fasta [pilon] Writing NODE_10156_length_318_cov_45.126904:1-318 changes to pilon.changes [pilon] Writing updated NODE_10156_length_318_cov_45.126904_pilon to pilon.fasta [pilon] Writing NODE_10157_length_318_cov_35.355330:1-318 changes to pilon.changes [pilon] Writing updated NODE_10157_length_318_cov_35.355330_pilon to pilon.fasta [pilon] Writing NODE_10158_length_318_cov_35.005076:1-318 changes to pilon.changes [pilon] Writing updated NODE_10158_length_318_cov_35.005076_pilon to pilon.fasta [pilon] Writing NODE_10159_length_318_cov_33.111675:1-318 changes to pilon.changes [pilon] Writing updated NODE_10159_length_318_cov_33.111675_pilon to pilon.fasta [pilon] Writing NODE_10160_length_318_cov_32.644670:1-318 changes to pilon.changes [pilon] Writing updated NODE_10160_length_318_cov_32.644670_pilon to pilon.fasta [pilon] Writing NODE_10161_length_318_cov_27.898477:1-318 changes to pilon.changes [pilon] Writing updated NODE_10161_length_318_cov_27.898477_pilon to pilon.fasta [pilon] Writing NODE_10162_length_318_cov_23.878173:1-318 changes to pilon.changes [pilon] Writing updated NODE_10162_length_318_cov_23.878173_pilon to pilon.fasta [pilon] Writing NODE_10163_length_318_cov_23.695431:1-318 changes to pilon.changes [pilon] Writing updated NODE_10163_length_318_cov_23.695431_pilon to pilon.fasta [pilon] Writing NODE_10164_length_318_cov_23.380711:1-318 changes to pilon.changes [pilon] Writing updated NODE_10164_length_318_cov_23.380711_pilon to pilon.fasta [pilon] Writing NODE_10165_length_318_cov_22.959391:1-318 changes to pilon.changes [pilon] Writing updated NODE_10165_length_318_cov_22.959391_pilon to pilon.fasta [pilon] Writing NODE_10166_length_318_cov_22.228426:1-318 changes to pilon.changes [pilon] Writing updated NODE_10166_length_318_cov_22.228426_pilon to pilon.fasta [pilon] Writing NODE_10167_length_318_cov_22.076142:1-318 changes to pilon.changes [pilon] Writing updated NODE_10167_length_318_cov_22.076142_pilon to pilon.fasta [pilon] Writing NODE_10168_length_318_cov_21.700508:1-318 changes to pilon.changes [pilon] Writing updated NODE_10168_length_318_cov_21.700508_pilon to pilon.fasta [pilon] Writing NODE_10169_length_318_cov_21.340102:1-318 changes to pilon.changes [pilon] Writing updated NODE_10169_length_318_cov_21.340102_pilon to pilon.fasta [pilon] Writing NODE_10170_length_318_cov_21.045685:1-318 changes to pilon.changes [pilon] Writing updated NODE_10170_length_318_cov_21.045685_pilon to pilon.fasta [pilon] Writing NODE_10171_length_318_cov_20.913706:1-318 changes to pilon.changes [pilon] Writing updated NODE_10171_length_318_cov_20.913706_pilon to pilon.fasta [pilon] Writing NODE_10172_length_318_cov_20.228426:1-318 changes to pilon.changes [pilon] Writing updated NODE_10172_length_318_cov_20.228426_pilon to pilon.fasta [pilon] Writing NODE_10173_length_318_cov_19.431472:1-318 changes to pilon.changes [pilon] Writing updated NODE_10173_length_318_cov_19.431472_pilon to pilon.fasta [pilon] Writing NODE_10174_length_318_cov_18.928934:1-318 changes to pilon.changes [pilon] Writing updated NODE_10174_length_318_cov_18.928934_pilon to pilon.fasta [pilon] Writing NODE_10175_length_318_cov_18.091371:1-318 changes to pilon.changes [pilon] Writing updated NODE_10175_length_318_cov_18.091371_pilon to pilon.fasta [pilon] Writing NODE_10176_length_318_cov_17.817259:1-318 changes to pilon.changes [pilon] Writing updated NODE_10176_length_318_cov_17.817259_pilon to pilon.fasta [pilon] Writing NODE_10177_length_318_cov_15.903553:1-318 changes to pilon.changes [pilon] Writing updated NODE_10177_length_318_cov_15.903553_pilon to pilon.fasta [pilon] Writing NODE_10178_length_318_cov_15.852792:1-318 changes to pilon.changes [pilon] Writing updated NODE_10178_length_318_cov_15.852792_pilon to pilon.fasta [pilon] Writing NODE_10179_length_318_cov_15.274112:1-318 changes to pilon.changes [pilon] Writing updated NODE_10179_length_318_cov_15.274112_pilon to pilon.fasta [pilon] Writing NODE_10180_length_318_cov_14.873096:1-318 changes to pilon.changes [pilon] Writing updated NODE_10180_length_318_cov_14.873096_pilon to pilon.fasta [pilon] Writing NODE_10181_length_318_cov_14.441624:1-318 changes to pilon.changes [pilon] Writing updated NODE_10181_length_318_cov_14.441624_pilon to pilon.fasta [pilon] Writing NODE_10182_length_318_cov_14.309645:1-318 changes to pilon.changes [pilon] Writing updated NODE_10182_length_318_cov_14.309645_pilon to pilon.fasta [pilon] Writing NODE_10183_length_318_cov_14.274112:1-318 changes to pilon.changes [pilon] Writing updated NODE_10183_length_318_cov_14.274112_pilon to pilon.fasta [pilon] Writing NODE_10184_length_318_cov_14.071066:1-318 changes to pilon.changes [pilon] Writing updated NODE_10184_length_318_cov_14.071066_pilon to pilon.fasta [pilon] Writing NODE_10185_length_318_cov_13.954315:1-318 changes to pilon.changes [pilon] Writing updated NODE_10185_length_318_cov_13.954315_pilon to pilon.fasta [pilon] Writing NODE_10186_length_318_cov_12.786802:1-318 changes to pilon.changes [pilon] Writing updated NODE_10186_length_318_cov_12.786802_pilon to pilon.fasta [pilon] Writing NODE_10187_length_318_cov_12.329949:1-318 changes to pilon.changes [pilon] Writing updated NODE_10187_length_318_cov_12.329949_pilon to pilon.fasta [pilon] Writing NODE_10188_length_318_cov_12.015228:1-318 changes to pilon.changes [pilon] Writing updated NODE_10188_length_318_cov_12.015228_pilon to pilon.fasta [pilon] Writing NODE_10189_length_318_cov_11.751269:1-318 changes to pilon.changes [pilon] Writing updated NODE_10189_length_318_cov_11.751269_pilon to pilon.fasta [pilon] Writing NODE_10190_length_318_cov_11.304569:1-318 changes to pilon.changes [pilon] Writing updated NODE_10190_length_318_cov_11.304569_pilon to pilon.fasta [pilon] Writing NODE_10191_length_318_cov_10.055838:1-318 changes to pilon.changes [pilon] Writing updated NODE_10191_length_318_cov_10.055838_pilon to pilon.fasta [pilon] Writing NODE_10192_length_318_cov_9.685279:1-318 changes to pilon.changes [pilon] Writing updated NODE_10192_length_318_cov_9.685279_pilon to pilon.fasta [pilon] Writing NODE_10193_length_318_cov_9.421320:1-318 changes to pilon.changes [pilon] Writing updated NODE_10193_length_318_cov_9.421320_pilon to pilon.fasta [pilon] Writing NODE_10194_length_318_cov_8.670051:1-318 changes to pilon.changes [pilon] Writing updated NODE_10194_length_318_cov_8.670051_pilon to pilon.fasta [pilon] Writing NODE_10195_length_318_cov_7.695431:1-318 changes to pilon.changes [pilon] Writing updated NODE_10195_length_318_cov_7.695431_pilon to pilon.fasta [pilon] Writing NODE_10196_length_318_cov_6.736041:1-318 changes to pilon.changes [pilon] Writing updated NODE_10196_length_318_cov_6.736041_pilon to pilon.fasta [pilon] Writing NODE_10197_length_318_cov_6.522843:1-318 changes to pilon.changes [pilon] Writing updated NODE_10197_length_318_cov_6.522843_pilon to pilon.fasta [pilon] Writing NODE_10198_length_317_cov_60.153061:1-317 changes to pilon.changes [pilon] Writing updated NODE_10198_length_317_cov_60.153061_pilon to pilon.fasta [pilon] Writing NODE_10199_length_317_cov_29.224490:1-317 changes to pilon.changes [pilon] Writing updated NODE_10199_length_317_cov_29.224490_pilon to pilon.fasta [pilon] Writing NODE_10200_length_317_cov_24.683673:1-317 changes to pilon.changes [pilon] Writing updated NODE_10200_length_317_cov_24.683673_pilon to pilon.fasta [pilon] Writing NODE_10201_length_317_cov_23.204082:1-317 changes to pilon.changes [pilon] Writing updated NODE_10201_length_317_cov_23.204082_pilon to pilon.fasta [pilon] Writing NODE_10202_length_317_cov_22.663265:1-317 changes to pilon.changes [pilon] Writing updated NODE_10202_length_317_cov_22.663265_pilon to pilon.fasta [pilon] Writing NODE_10203_length_317_cov_21.229592:1-317 changes to pilon.changes [pilon] Writing updated NODE_10203_length_317_cov_21.229592_pilon to pilon.fasta [pilon] Writing NODE_10204_length_317_cov_21.010204:1-317 changes to pilon.changes [pilon] Writing updated NODE_10204_length_317_cov_21.010204_pilon to pilon.fasta [pilon] Writing NODE_10205_length_317_cov_18.045918:1-317 changes to pilon.changes [pilon] Writing updated NODE_10205_length_317_cov_18.045918_pilon to pilon.fasta [pilon] Writing NODE_10206_length_317_cov_16.811224:1-317 changes to pilon.changes [pilon] Writing updated NODE_10206_length_317_cov_16.811224_pilon to pilon.fasta [pilon] Writing NODE_10207_length_317_cov_14.765306:1-317 changes to pilon.changes [pilon] Writing updated NODE_10207_length_317_cov_14.765306_pilon to pilon.fasta [pilon] Writing NODE_10208_length_317_cov_11.377551:1-317 changes to pilon.changes [pilon] Writing updated NODE_10208_length_317_cov_11.377551_pilon to pilon.fasta [pilon] Writing NODE_10209_length_316_cov_61.369231:1-316 changes to pilon.changes [pilon] Writing updated NODE_10209_length_316_cov_61.369231_pilon to pilon.fasta [pilon] Writing NODE_10210_length_316_cov_36.333333:1-316 changes to pilon.changes [pilon] Writing updated NODE_10210_length_316_cov_36.333333_pilon to pilon.fasta [pilon] Writing NODE_10211_length_316_cov_32.610256:1-316 changes to pilon.changes [pilon] Writing updated NODE_10211_length_316_cov_32.610256_pilon to pilon.fasta [pilon] Writing NODE_10212_length_316_cov_28.364103:1-316 changes to pilon.changes [pilon] Writing updated NODE_10212_length_316_cov_28.364103_pilon to pilon.fasta [pilon] Writing NODE_10213_length_316_cov_25.676923:1-316 changes to pilon.changes [pilon] Writing updated NODE_10213_length_316_cov_25.676923_pilon to pilon.fasta [pilon] Writing NODE_10214_length_316_cov_17.994872:1-316 changes to pilon.changes [pilon] Writing updated NODE_10214_length_316_cov_17.994872_pilon to pilon.fasta [pilon] Writing NODE_10215_length_316_cov_17.189744:1-316 changes to pilon.changes [pilon] Writing updated NODE_10215_length_316_cov_17.189744_pilon to pilon.fasta [pilon] Writing NODE_10216_length_316_cov_16.220513:1-316 changes to pilon.changes [pilon] Writing updated NODE_10216_length_316_cov_16.220513_pilon to pilon.fasta [pilon] Writing NODE_10217_length_316_cov_13.435897:1-316 changes to pilon.changes [pilon] Writing updated NODE_10217_length_316_cov_13.435897_pilon to pilon.fasta [pilon] Writing NODE_10218_length_316_cov_12.866667:1-316 changes to pilon.changes [pilon] Writing updated NODE_10218_length_316_cov_12.866667_pilon to pilon.fasta [pilon] Writing NODE_10219_length_316_cov_12.389744:1-316 changes to pilon.changes [pilon] Writing updated NODE_10219_length_316_cov_12.389744_pilon to pilon.fasta [pilon] Writing NODE_10220_length_316_cov_11.917949:1-316 changes to pilon.changes [pilon] Writing updated NODE_10220_length_316_cov_11.917949_pilon to pilon.fasta [pilon] Writing NODE_10221_length_316_cov_11.743590:1-316 changes to pilon.changes [pilon] Writing updated NODE_10221_length_316_cov_11.743590_pilon to pilon.fasta [pilon] Writing NODE_10222_length_316_cov_11.364103:1-316 changes to pilon.changes [pilon] Writing updated NODE_10222_length_316_cov_11.364103_pilon to pilon.fasta [pilon] Writing NODE_10223_length_316_cov_6.389744:1-316 changes to pilon.changes [pilon] Writing updated NODE_10223_length_316_cov_6.389744_pilon to pilon.fasta [pilon] Writing NODE_10224_length_316_cov_5.656410:1-316 changes to pilon.changes [pilon] Writing updated NODE_10224_length_316_cov_5.656410_pilon to pilon.fasta [pilon] Writing NODE_10225_length_316_cov_2.158974:1-316 changes to pilon.changes [pilon] Writing updated NODE_10225_length_316_cov_2.158974_pilon to pilon.fasta [pilon] Writing NODE_10226_length_315_cov_39.149485:1-315 changes to pilon.changes [pilon] Writing updated NODE_10226_length_315_cov_39.149485_pilon to pilon.fasta [pilon] Writing NODE_10227_length_315_cov_37.237113:1-315 changes to pilon.changes [pilon] Writing updated NODE_10227_length_315_cov_37.237113_pilon to pilon.fasta [pilon] Writing NODE_10228_length_315_cov_30.865979:1-315 changes to pilon.changes [pilon] Writing updated NODE_10228_length_315_cov_30.865979_pilon to pilon.fasta [pilon] Writing NODE_10229_length_315_cov_30.603093:1-315 changes to pilon.changes [pilon] Writing updated NODE_10229_length_315_cov_30.603093_pilon to pilon.fasta [pilon] Writing NODE_10230_length_315_cov_29.701031:1-315 changes to pilon.changes [pilon] Writing updated NODE_10230_length_315_cov_29.701031_pilon to pilon.fasta [pilon] Writing NODE_10231_length_315_cov_29.654639:1-315 changes to pilon.changes [pilon] Writing updated NODE_10231_length_315_cov_29.654639_pilon to pilon.fasta [pilon] Writing NODE_10232_length_315_cov_29.381443:1-315 changes to pilon.changes [pilon] Writing updated NODE_10232_length_315_cov_29.381443_pilon to pilon.fasta [pilon] Writing NODE_10233_length_315_cov_26.840206:1-315 changes to pilon.changes [pilon] Writing updated NODE_10233_length_315_cov_26.840206_pilon to pilon.fasta [pilon] Writing NODE_10234_length_315_cov_26.613402:1-315 changes to pilon.changes [pilon] Writing updated NODE_10234_length_315_cov_26.613402_pilon to pilon.fasta [pilon] Writing NODE_10235_length_315_cov_25.010309:1-315 changes to pilon.changes [pilon] Writing updated NODE_10235_length_315_cov_25.010309_pilon to pilon.fasta [pilon] Writing NODE_10236_length_315_cov_24.742268:1-315 changes to pilon.changes [pilon] Writing updated NODE_10236_length_315_cov_24.742268_pilon to pilon.fasta [pilon] Writing NODE_10237_length_315_cov_23.190722:1-315 changes to pilon.changes [pilon] Writing updated NODE_10237_length_315_cov_23.190722_pilon to pilon.fasta [pilon] Writing NODE_10238_length_315_cov_21.809278:1-315 changes to pilon.changes [pilon] Writing updated NODE_10238_length_315_cov_21.809278_pilon to pilon.fasta [pilon] Writing NODE_10239_length_315_cov_21.515464:1-315 changes to pilon.changes [pilon] Writing updated NODE_10239_length_315_cov_21.515464_pilon to pilon.fasta [pilon] Writing NODE_10240_length_315_cov_20.850515:1-315 changes to pilon.changes [pilon] Writing updated NODE_10240_length_315_cov_20.850515_pilon to pilon.fasta [pilon] Writing NODE_10241_length_315_cov_18.716495:1-315 changes to pilon.changes [pilon] Writing updated NODE_10241_length_315_cov_18.716495_pilon to pilon.fasta [pilon] Writing NODE_10242_length_315_cov_18.144330:1-315 changes to pilon.changes [pilon] Writing updated NODE_10242_length_315_cov_18.144330_pilon to pilon.fasta [pilon] Writing NODE_10243_length_315_cov_15.798969:1-315 changes to pilon.changes [pilon] Writing updated NODE_10243_length_315_cov_15.798969_pilon to pilon.fasta [pilon] Writing NODE_10244_length_315_cov_15.185567:1-315 changes to pilon.changes [pilon] Writing updated NODE_10244_length_315_cov_15.185567_pilon to pilon.fasta [pilon] Writing NODE_10245_length_315_cov_15.036082:1-315 changes to pilon.changes [pilon] Writing updated NODE_10245_length_315_cov_15.036082_pilon to pilon.fasta [pilon] Writing NODE_10246_length_315_cov_13.262887:1-315 changes to pilon.changes [pilon] Writing updated NODE_10246_length_315_cov_13.262887_pilon to pilon.fasta [pilon] Writing NODE_10247_length_315_cov_13.097938:1-315 changes to pilon.changes [pilon] Writing updated NODE_10247_length_315_cov_13.097938_pilon to pilon.fasta [pilon] Writing NODE_10248_length_315_cov_12.943299:1-315 changes to pilon.changes [pilon] Writing updated NODE_10248_length_315_cov_12.943299_pilon to pilon.fasta [pilon] Writing NODE_10249_length_315_cov_12.871134:1-315 changes to pilon.changes [pilon] Writing updated NODE_10249_length_315_cov_12.871134_pilon to pilon.fasta [pilon] Writing NODE_10250_length_315_cov_12.520619:1-315 changes to pilon.changes [pilon] Writing updated NODE_10250_length_315_cov_12.520619_pilon to pilon.fasta [pilon] Writing NODE_10251_length_315_cov_12.463918:1-315 changes to pilon.changes [pilon] Writing updated NODE_10251_length_315_cov_12.463918_pilon to pilon.fasta [pilon] Writing NODE_10252_length_315_cov_12.154639:1-315 changes to pilon.changes [pilon] Writing updated NODE_10252_length_315_cov_12.154639_pilon to pilon.fasta [pilon] Writing NODE_10253_length_315_cov_11.989691:1-315 changes to pilon.changes [pilon] Writing updated NODE_10253_length_315_cov_11.989691_pilon to pilon.fasta [pilon] Writing NODE_10254_length_315_cov_11.273196:1-315 changes to pilon.changes [pilon] Writing updated NODE_10254_length_315_cov_11.273196_pilon to pilon.fasta [pilon] Writing NODE_10255_length_315_cov_10.762887:1-315 changes to pilon.changes [pilon] Writing updated NODE_10255_length_315_cov_10.762887_pilon to pilon.fasta [pilon] Writing NODE_10256_length_315_cov_10.711340:1-315 changes to pilon.changes [pilon] Writing updated NODE_10256_length_315_cov_10.711340_pilon to pilon.fasta [pilon] Writing NODE_10257_length_315_cov_10.149485:1-315 changes to pilon.changes [pilon] Writing updated NODE_10257_length_315_cov_10.149485_pilon to pilon.fasta [pilon] Writing NODE_10258_length_315_cov_9.731959:1-315 changes to pilon.changes [pilon] Writing updated NODE_10258_length_315_cov_9.731959_pilon to pilon.fasta [pilon] Writing NODE_10259_length_315_cov_9.546392:1-315 changes to pilon.changes [pilon] Writing updated NODE_10259_length_315_cov_9.546392_pilon to pilon.fasta [pilon] Writing NODE_10260_length_315_cov_9.113402:1-315 changes to pilon.changes [pilon] Writing updated NODE_10260_length_315_cov_9.113402_pilon to pilon.fasta [pilon] Writing NODE_10261_length_315_cov_9.030928:1-315 changes to pilon.changes [pilon] Writing updated NODE_10261_length_315_cov_9.030928_pilon to pilon.fasta [pilon] Writing NODE_10262_length_315_cov_8.912371:1-315 changes to pilon.changes [pilon] Writing updated NODE_10262_length_315_cov_8.912371_pilon to pilon.fasta [pilon] Writing NODE_10263_length_315_cov_8.891753:1-315 changes to pilon.changes [pilon] Writing updated NODE_10263_length_315_cov_8.891753_pilon to pilon.fasta [pilon] Writing NODE_10264_length_315_cov_8.577320:1-315 changes to pilon.changes [pilon] Writing updated NODE_10264_length_315_cov_8.577320_pilon to pilon.fasta [pilon] Writing NODE_10265_length_315_cov_7.963918:1-315 changes to pilon.changes [pilon] Writing updated NODE_10265_length_315_cov_7.963918_pilon to pilon.fasta [pilon] Writing NODE_10266_length_315_cov_7.917526:1-315 changes to pilon.changes [pilon] Writing updated NODE_10266_length_315_cov_7.917526_pilon to pilon.fasta [pilon] Writing NODE_10267_length_315_cov_7.324742:1-315 changes to pilon.changes [pilon] Writing updated NODE_10267_length_315_cov_7.324742_pilon to pilon.fasta [pilon] Writing NODE_10268_length_315_cov_7.201031:1-315 changes to pilon.changes [pilon] Writing updated NODE_10268_length_315_cov_7.201031_pilon to pilon.fasta [pilon] Writing NODE_10269_length_315_cov_6.855670:1-315 changes to pilon.changes [pilon] Writing updated NODE_10269_length_315_cov_6.855670_pilon to pilon.fasta [pilon] Writing NODE_10270_length_315_cov_6.793814:1-315 changes to pilon.changes [pilon] Writing updated NODE_10270_length_315_cov_6.793814_pilon to pilon.fasta [pilon] Writing NODE_10271_length_315_cov_6.525773:1-315 changes to pilon.changes [pilon] Writing updated NODE_10271_length_315_cov_6.525773_pilon to pilon.fasta [pilon] Writing NODE_10272_length_315_cov_6.082474:1-315 changes to pilon.changes [pilon] Writing updated NODE_10272_length_315_cov_6.082474_pilon to pilon.fasta [pilon] Writing NODE_10273_length_315_cov_5.412371:1-315 changes to pilon.changes [pilon] Writing updated NODE_10273_length_315_cov_5.412371_pilon to pilon.fasta [pilon] Writing NODE_10274_length_314_cov_71.481865:1-314 changes to pilon.changes [pilon] Writing updated NODE_10274_length_314_cov_71.481865_pilon to pilon.fasta [pilon] Writing NODE_10275_length_314_cov_64.347150:1-314 changes to pilon.changes [pilon] Writing updated NODE_10275_length_314_cov_64.347150_pilon to pilon.fasta [pilon] Writing NODE_10276_length_314_cov_32.720207:1-314 changes to pilon.changes [pilon] Writing updated NODE_10276_length_314_cov_32.720207_pilon to pilon.fasta [pilon] Writing NODE_10277_length_314_cov_29.404145:1-314 changes to pilon.changes [pilon] Writing updated NODE_10277_length_314_cov_29.404145_pilon to pilon.fasta [pilon] Writing NODE_10278_length_314_cov_26.077720:1-314 changes to pilon.changes [pilon] Writing updated NODE_10278_length_314_cov_26.077720_pilon to pilon.fasta [pilon] Writing NODE_10279_length_314_cov_24.886010:1-314 changes to pilon.changes [pilon] Writing updated NODE_10279_length_314_cov_24.886010_pilon to pilon.fasta [pilon] Writing NODE_10280_length_314_cov_23.642487:1-314 changes to pilon.changes [pilon] Writing updated NODE_10280_length_314_cov_23.642487_pilon to pilon.fasta [pilon] Writing NODE_10281_length_314_cov_22.854922:1-314 changes to pilon.changes [pilon] Writing updated NODE_10281_length_314_cov_22.854922_pilon to pilon.fasta [pilon] Writing NODE_10282_length_314_cov_22.549223:1-314 changes to pilon.changes [pilon] Writing updated NODE_10282_length_314_cov_22.549223_pilon to pilon.fasta [pilon] Writing NODE_10283_length_314_cov_21.497409:1-314 changes to pilon.changes [pilon] Writing updated NODE_10283_length_314_cov_21.497409_pilon to pilon.fasta [pilon] Writing NODE_10284_length_314_cov_20.740933:1-314 changes to pilon.changes [pilon] Writing updated NODE_10284_length_314_cov_20.740933_pilon to pilon.fasta [pilon] Writing NODE_10285_length_314_cov_19.834197:1-314 changes to pilon.changes [pilon] Writing updated NODE_10285_length_314_cov_19.834197_pilon to pilon.fasta [pilon] Writing NODE_10286_length_314_cov_16.875648:1-314 changes to pilon.changes [pilon] Writing updated NODE_10286_length_314_cov_16.875648_pilon to pilon.fasta [pilon] Writing NODE_10287_length_314_cov_15.300518:1-314 changes to pilon.changes [pilon] Writing updated NODE_10287_length_314_cov_15.300518_pilon to pilon.fasta [pilon] Writing NODE_10288_length_314_cov_14.968912:1-314 changes to pilon.changes [pilon] Writing updated NODE_10288_length_314_cov_14.968912_pilon to pilon.fasta [pilon] Writing NODE_10289_length_314_cov_13.538860:1-314 changes to pilon.changes [pilon] Writing updated NODE_10289_length_314_cov_13.538860_pilon to pilon.fasta [pilon] Writing NODE_10290_length_314_cov_10.554404:1-314 changes to pilon.changes [pilon] Writing updated NODE_10290_length_314_cov_10.554404_pilon to pilon.fasta [pilon] Writing NODE_10291_length_314_cov_8.699482:1-314 changes to pilon.changes [pilon] Writing updated NODE_10291_length_314_cov_8.699482_pilon to pilon.fasta [pilon] Writing NODE_10292_length_314_cov_6.715026:1-314 changes to pilon.changes [pilon] Writing updated NODE_10292_length_314_cov_6.715026_pilon to pilon.fasta [pilon] Writing NODE_10293_length_313_cov_41.020833:1-313 changes to pilon.changes [pilon] Writing updated NODE_10293_length_313_cov_41.020833_pilon to pilon.fasta [pilon] Writing NODE_10294_length_313_cov_30.291667:1-313 changes to pilon.changes [pilon] Writing updated NODE_10294_length_313_cov_30.291667_pilon to pilon.fasta [pilon] Writing NODE_10295_length_313_cov_29.520833:1-313 changes to pilon.changes [pilon] Writing updated NODE_10295_length_313_cov_29.520833_pilon to pilon.fasta [pilon] Writing NODE_10296_length_313_cov_23.296875:1-313 changes to pilon.changes [pilon] Writing updated NODE_10296_length_313_cov_23.296875_pilon to pilon.fasta [pilon] Writing NODE_10297_length_313_cov_22.286458:1-313 changes to pilon.changes [pilon] Writing updated NODE_10297_length_313_cov_22.286458_pilon to pilon.fasta [pilon] Writing NODE_10298_length_313_cov_21.182292:1-313 changes to pilon.changes [pilon] Writing updated NODE_10298_length_313_cov_21.182292_pilon to pilon.fasta [pilon] Writing NODE_10299_length_313_cov_17.921875:1-313 changes to pilon.changes [pilon] Writing updated NODE_10299_length_313_cov_17.921875_pilon to pilon.fasta [pilon] Writing NODE_10300_length_313_cov_14.911458:1-313 changes to pilon.changes [pilon] Writing updated NODE_10300_length_313_cov_14.911458_pilon to pilon.fasta [pilon] Writing NODE_10301_length_313_cov_11.026042:1-313 changes to pilon.changes [pilon] Writing updated NODE_10301_length_313_cov_11.026042_pilon to pilon.fasta [pilon] Writing NODE_10302_length_313_cov_6.744792:1-313 changes to pilon.changes [pilon] Writing updated NODE_10302_length_313_cov_6.744792_pilon to pilon.fasta [pilon] Writing NODE_10303_length_313_cov_5.895833:1-313 changes to pilon.changes [pilon] Writing updated NODE_10303_length_313_cov_5.895833_pilon to pilon.fasta [pilon] Writing NODE_10304_length_313_cov_5.505208:1-313 changes to pilon.changes [pilon] Writing updated NODE_10304_length_313_cov_5.505208_pilon to pilon.fasta [pilon] Writing NODE_10305_length_313_cov_1.052083:1-313 changes to pilon.changes [pilon] Writing updated NODE_10305_length_313_cov_1.052083_pilon to pilon.fasta [pilon] Writing NODE_10306_length_312_cov_38.178010:1-312 changes to pilon.changes [pilon] Writing updated NODE_10306_length_312_cov_38.178010_pilon to pilon.fasta [pilon] Writing NODE_10307_length_312_cov_36.062827:1-312 changes to pilon.changes [pilon] Writing updated NODE_10307_length_312_cov_36.062827_pilon to pilon.fasta [pilon] Writing NODE_10308_length_312_cov_34.298429:1-312 changes to pilon.changes [pilon] Writing updated NODE_10308_length_312_cov_34.298429_pilon to pilon.fasta [pilon] Writing NODE_10309_length_312_cov_33.094241:1-312 changes to pilon.changes [pilon] Writing updated NODE_10309_length_312_cov_33.094241_pilon to pilon.fasta [pilon] Writing NODE_10310_length_312_cov_31.963351:1-312 changes to pilon.changes [pilon] Writing updated NODE_10310_length_312_cov_31.963351_pilon to pilon.fasta [pilon] Writing NODE_10311_length_312_cov_27.235602:1-312 changes to pilon.changes [pilon] Writing updated NODE_10311_length_312_cov_27.235602_pilon to pilon.fasta [pilon] Writing NODE_10312_length_312_cov_26.968586:1-312 changes to pilon.changes [pilon] Writing updated NODE_10312_length_312_cov_26.968586_pilon to pilon.fasta [pilon] Writing NODE_10313_length_312_cov_26.874346:1-312 changes to pilon.changes [pilon] Writing updated NODE_10313_length_312_cov_26.874346_pilon to pilon.fasta [pilon] Writing NODE_10314_length_312_cov_26.465969:1-312 changes to pilon.changes [pilon] Writing updated NODE_10314_length_312_cov_26.465969_pilon to pilon.fasta [pilon] Writing NODE_10315_length_312_cov_26.251309:1-312 changes to pilon.changes [pilon] Writing updated NODE_10315_length_312_cov_26.251309_pilon to pilon.fasta [pilon] Writing NODE_10316_length_312_cov_26.141361:1-312 changes to pilon.changes [pilon] Writing updated NODE_10316_length_312_cov_26.141361_pilon to pilon.fasta [pilon] Writing NODE_10317_length_312_cov_25.706806:1-312 changes to pilon.changes [pilon] Writing updated NODE_10317_length_312_cov_25.706806_pilon to pilon.fasta [pilon] Writing NODE_10318_length_312_cov_24.921466:1-312 changes to pilon.changes [pilon] Writing updated NODE_10318_length_312_cov_24.921466_pilon to pilon.fasta [pilon] Writing NODE_10319_length_312_cov_23.214660:1-312 changes to pilon.changes [pilon] Writing updated NODE_10319_length_312_cov_23.214660_pilon to pilon.fasta [pilon] Writing NODE_10320_length_312_cov_21.853403:1-312 changes to pilon.changes [pilon] Writing updated NODE_10320_length_312_cov_21.853403_pilon to pilon.fasta [pilon] Writing NODE_10321_length_312_cov_21.465969:1-312 changes to pilon.changes [pilon] Writing updated NODE_10321_length_312_cov_21.465969_pilon to pilon.fasta [pilon] Writing NODE_10322_length_312_cov_21.408377:1-312 changes to pilon.changes [pilon] Writing updated NODE_10322_length_312_cov_21.408377_pilon to pilon.fasta [pilon] Writing NODE_10323_length_312_cov_21.387435:1-312 changes to pilon.changes [pilon] Writing updated NODE_10323_length_312_cov_21.387435_pilon to pilon.fasta [pilon] Writing NODE_10324_length_312_cov_21.319372:1-312 changes to pilon.changes [pilon] Writing updated NODE_10324_length_312_cov_21.319372_pilon to pilon.fasta [pilon] Writing NODE_10325_length_312_cov_20.764398:1-312 changes to pilon.changes [pilon] Writing updated NODE_10325_length_312_cov_20.764398_pilon to pilon.fasta [pilon] Writing NODE_10326_length_312_cov_20.225131:1-312 changes to pilon.changes [pilon] Writing updated NODE_10326_length_312_cov_20.225131_pilon to pilon.fasta [pilon] Writing NODE_10327_length_312_cov_19.732984:1-312 changes to pilon.changes [pilon] Writing updated NODE_10327_length_312_cov_19.732984_pilon to pilon.fasta [pilon] Writing NODE_10328_length_312_cov_19.675393:1-312 changes to pilon.changes [pilon] Writing updated NODE_10328_length_312_cov_19.675393_pilon to pilon.fasta [pilon] Writing NODE_10329_length_312_cov_19.335079:1-312 changes to pilon.changes [pilon] Writing updated NODE_10329_length_312_cov_19.335079_pilon to pilon.fasta [pilon] Writing NODE_10330_length_312_cov_18.602094:1-312 changes to pilon.changes [pilon] Writing updated NODE_10330_length_312_cov_18.602094_pilon to pilon.fasta [pilon] Writing NODE_10331_length_312_cov_16.073298:1-312 changes to pilon.changes [pilon] Writing updated NODE_10331_length_312_cov_16.073298_pilon to pilon.fasta [pilon] Writing NODE_10332_length_312_cov_15.481675:1-312 changes to pilon.changes [pilon] Writing updated NODE_10332_length_312_cov_15.481675_pilon to pilon.fasta [pilon] Writing NODE_10333_length_312_cov_14.837696:1-312 changes to pilon.changes [pilon] Writing updated NODE_10333_length_312_cov_14.837696_pilon to pilon.fasta [pilon] Writing NODE_10334_length_312_cov_14.492147:1-312 changes to pilon.changes [pilon] Writing updated NODE_10334_length_312_cov_14.492147_pilon to pilon.fasta [pilon] Writing NODE_10335_length_312_cov_14.230366:1-312 changes to pilon.changes [pilon] Writing updated NODE_10335_length_312_cov_14.230366_pilon to pilon.fasta [pilon] Writing NODE_10336_length_312_cov_14.162304:1-312 changes to pilon.changes [pilon] Writing updated NODE_10336_length_312_cov_14.162304_pilon to pilon.fasta [pilon] Writing NODE_10337_length_312_cov_14.130890:1-312 changes to pilon.changes [pilon] Writing updated NODE_10337_length_312_cov_14.130890_pilon to pilon.fasta [pilon] Writing NODE_10338_length_312_cov_13.670157:1-312 changes to pilon.changes [pilon] Writing updated NODE_10338_length_312_cov_13.670157_pilon to pilon.fasta [pilon] Writing NODE_10339_length_312_cov_13.649215:1-312 changes to pilon.changes [pilon] Writing updated NODE_10339_length_312_cov_13.649215_pilon to pilon.fasta [pilon] Writing NODE_10340_length_312_cov_12.900524:1-312 changes to pilon.changes [pilon] Writing updated NODE_10340_length_312_cov_12.900524_pilon to pilon.fasta [pilon] Writing NODE_10341_length_312_cov_11.743455:1-312 changes to pilon.changes [pilon] Writing updated NODE_10341_length_312_cov_11.743455_pilon to pilon.fasta [pilon] Writing NODE_10342_length_312_cov_10.701571:1-312 changes to pilon.changes [pilon] Writing updated NODE_10342_length_312_cov_10.701571_pilon to pilon.fasta [pilon] Writing NODE_10343_length_312_cov_10.282723:1-312 changes to pilon.changes [pilon] Writing updated NODE_10343_length_312_cov_10.282723_pilon to pilon.fasta [pilon] Writing NODE_10344_length_312_cov_9.178010:1-312 changes to pilon.changes [pilon] Writing updated NODE_10344_length_312_cov_9.178010_pilon to pilon.fasta [pilon] Writing NODE_10345_length_312_cov_8.073298:1-312 changes to pilon.changes [pilon] Writing updated NODE_10345_length_312_cov_8.073298_pilon to pilon.fasta [pilon] Writing NODE_10346_length_312_cov_6.979058:1-312 changes to pilon.changes [pilon] Writing updated NODE_10346_length_312_cov_6.979058_pilon to pilon.fasta [pilon] Writing NODE_10347_length_312_cov_6.910995:1-312 changes to pilon.changes [pilon] Writing updated NODE_10347_length_312_cov_6.910995_pilon to pilon.fasta [pilon] Writing NODE_10348_length_312_cov_5.424084:1-312 changes to pilon.changes [pilon] Writing updated NODE_10348_length_312_cov_5.424084_pilon to pilon.fasta [pilon] Writing NODE_10349_length_311_cov_56.421053:1-311 changes to pilon.changes [pilon] Writing updated NODE_10349_length_311_cov_56.421053_pilon to pilon.fasta [pilon] Writing NODE_10350_length_311_cov_49.510526:1-311 changes to pilon.changes [pilon] Writing updated NODE_10350_length_311_cov_49.510526_pilon to pilon.fasta [pilon] Writing NODE_10351_length_311_cov_28.989474:1-311 changes to pilon.changes [pilon] Writing updated NODE_10351_length_311_cov_28.989474_pilon to pilon.fasta [pilon] Writing NODE_10352_length_311_cov_23.142105:1-311 changes to pilon.changes [pilon] Writing updated NODE_10352_length_311_cov_23.142105_pilon to pilon.fasta [pilon] Writing NODE_10353_length_311_cov_19.973684:1-311 changes to pilon.changes [pilon] Writing updated NODE_10353_length_311_cov_19.973684_pilon to pilon.fasta [pilon] Writing NODE_10354_length_311_cov_19.536842:1-311 changes to pilon.changes [pilon] Writing updated NODE_10354_length_311_cov_19.536842_pilon to pilon.fasta [pilon] Writing NODE_10355_length_311_cov_19.000000:1-311 changes to pilon.changes [pilon] Writing updated NODE_10355_length_311_cov_19.000000_pilon to pilon.fasta [pilon] Writing NODE_10356_length_311_cov_13.068421:1-311 changes to pilon.changes [pilon] Writing updated NODE_10356_length_311_cov_13.068421_pilon to pilon.fasta [pilon] Writing NODE_10357_length_311_cov_12.915789:1-311 changes to pilon.changes [pilon] Writing updated NODE_10357_length_311_cov_12.915789_pilon to pilon.fasta [pilon] Writing NODE_10358_length_311_cov_10.573684:1-311 changes to pilon.changes [pilon] Writing updated NODE_10358_length_311_cov_10.573684_pilon to pilon.fasta [pilon] Writing NODE_10359_length_311_cov_1.384211:1-311 changes to pilon.changes [pilon] Writing updated NODE_10359_length_311_cov_1.384211_pilon to pilon.fasta [pilon] Writing NODE_10360_length_310_cov_37.523810:1-310 changes to pilon.changes [pilon] Writing updated NODE_10360_length_310_cov_37.523810_pilon to pilon.fasta [pilon] Writing NODE_10361_length_310_cov_32.619048:1-310 changes to pilon.changes [pilon] Writing updated NODE_10361_length_310_cov_32.619048_pilon to pilon.fasta [pilon] Writing NODE_10362_length_310_cov_24.693122:1-310 changes to pilon.changes [pilon] Writing updated NODE_10362_length_310_cov_24.693122_pilon to pilon.fasta [pilon] Writing NODE_10363_length_310_cov_22.677249:1-310 changes to pilon.changes [pilon] Writing updated NODE_10363_length_310_cov_22.677249_pilon to pilon.fasta [pilon] Writing NODE_10364_length_310_cov_18.719577:1-310 changes to pilon.changes [pilon] Writing updated NODE_10364_length_310_cov_18.719577_pilon to pilon.fasta [pilon] Writing NODE_10365_length_310_cov_18.095238:1-310 changes to pilon.changes [pilon] Writing updated NODE_10365_length_310_cov_18.095238_pilon to pilon.fasta [pilon] Writing NODE_10366_length_310_cov_15.486772:1-310 changes to pilon.changes [pilon] Writing updated NODE_10366_length_310_cov_15.486772_pilon to pilon.fasta [pilon] Writing NODE_10367_length_310_cov_13.883598:1-310 changes to pilon.changes [pilon] Writing updated NODE_10367_length_310_cov_13.883598_pilon to pilon.fasta [pilon] Writing NODE_10368_length_310_cov_13.253968:1-310 changes to pilon.changes [pilon] Writing updated NODE_10368_length_310_cov_13.253968_pilon to pilon.fasta [pilon] Writing NODE_10369_length_310_cov_9.566138:1-310 changes to pilon.changes [pilon] Writing updated NODE_10369_length_310_cov_9.566138_pilon to pilon.fasta [pilon] Writing NODE_10370_length_310_cov_9.190476:1-310 changes to pilon.changes [pilon] Writing updated NODE_10370_length_310_cov_9.190476_pilon to pilon.fasta [pilon] Writing NODE_10371_length_310_cov_2.687831:1-310 changes to pilon.changes [pilon] Writing updated NODE_10371_length_310_cov_2.687831_pilon to pilon.fasta [pilon] Writing NODE_10372_length_309_cov_35.436170:1-309 changes to pilon.changes [pilon] Writing updated NODE_10372_length_309_cov_35.436170_pilon to pilon.fasta [pilon] Writing NODE_10373_length_309_cov_34.537234:1-309 changes to pilon.changes [pilon] Writing updated NODE_10373_length_309_cov_34.537234_pilon to pilon.fasta [pilon] Writing NODE_10374_length_309_cov_34.414894:1-309 changes to pilon.changes [pilon] Writing updated NODE_10374_length_309_cov_34.414894_pilon to pilon.fasta [pilon] Writing NODE_10375_length_309_cov_31.234043:1-309 changes to pilon.changes [pilon] Writing updated NODE_10375_length_309_cov_31.234043_pilon to pilon.fasta [pilon] Writing NODE_10376_length_309_cov_29.851064:1-309 changes to pilon.changes [pilon] Writing updated NODE_10376_length_309_cov_29.851064_pilon to pilon.fasta [pilon] Writing NODE_10377_length_309_cov_28.457447:1-309 changes to pilon.changes [pilon] Writing updated NODE_10377_length_309_cov_28.457447_pilon to pilon.fasta [pilon] Writing NODE_10378_length_309_cov_28.101064:1-309 changes to pilon.changes [pilon] Writing updated NODE_10378_length_309_cov_28.101064_pilon to pilon.fasta [pilon] Writing NODE_10379_length_309_cov_26.484043:1-309 changes to pilon.changes [pilon] Writing updated NODE_10379_length_309_cov_26.484043_pilon to pilon.fasta [pilon] Writing NODE_10380_length_309_cov_25.388298:1-309 changes to pilon.changes [pilon] Writing updated NODE_10380_length_309_cov_25.388298_pilon to pilon.fasta [pilon] Writing NODE_10381_length_309_cov_25.244681:1-309 changes to pilon.changes [pilon] Writing updated NODE_10381_length_309_cov_25.244681_pilon to pilon.fasta [pilon] Writing NODE_10382_length_309_cov_24.377660:1-309 changes to pilon.changes [pilon] Writing updated NODE_10382_length_309_cov_24.377660_pilon to pilon.fasta [pilon] Writing NODE_10383_length_309_cov_24.212766:1-309 changes to pilon.changes [pilon] Writing updated NODE_10383_length_309_cov_24.212766_pilon to pilon.fasta [pilon] Writing NODE_10384_length_309_cov_20.340426:1-309 changes to pilon.changes [pilon] Writing updated NODE_10384_length_309_cov_20.340426_pilon to pilon.fasta [pilon] Writing NODE_10385_length_309_cov_18.952128:1-309 changes to pilon.changes [pilon] Writing updated NODE_10385_length_309_cov_18.952128_pilon to pilon.fasta [pilon] Writing NODE_10386_length_309_cov_18.148936:1-309 changes to pilon.changes [pilon] Writing updated NODE_10386_length_309_cov_18.148936_pilon to pilon.fasta [pilon] Writing NODE_10387_length_309_cov_18.106383:1-309 changes to pilon.changes [pilon] Writing updated NODE_10387_length_309_cov_18.106383_pilon to pilon.fasta [pilon] Writing NODE_10388_length_309_cov_18.031915:1-309 changes to pilon.changes [pilon] Writing updated NODE_10388_length_309_cov_18.031915_pilon to pilon.fasta [pilon] Writing NODE_10389_length_309_cov_17.994681:1-309 changes to pilon.changes [pilon] Writing updated NODE_10389_length_309_cov_17.994681_pilon to pilon.fasta [pilon] Writing NODE_10390_length_309_cov_17.968085:1-309 changes to pilon.changes [pilon] Writing updated NODE_10390_length_309_cov_17.968085_pilon to pilon.fasta [pilon] Writing NODE_10391_length_309_cov_17.904255:1-309 changes to pilon.changes [pilon] Writing updated NODE_10391_length_309_cov_17.904255_pilon to pilon.fasta [pilon] Writing NODE_10392_length_309_cov_16.792553:1-309 changes to pilon.changes [pilon] Writing updated NODE_10392_length_309_cov_16.792553_pilon to pilon.fasta [pilon] Writing NODE_10393_length_309_cov_16.659574:1-309 changes to pilon.changes [pilon] Writing updated NODE_10393_length_309_cov_16.659574_pilon to pilon.fasta [pilon] Writing NODE_10394_length_309_cov_16.351064:1-309 changes to pilon.changes [pilon] Writing updated NODE_10394_length_309_cov_16.351064_pilon to pilon.fasta [pilon] Writing NODE_10395_length_309_cov_16.265957:1-309 changes to pilon.changes [pilon] Writing updated NODE_10395_length_309_cov_16.265957_pilon to pilon.fasta [pilon] Writing NODE_10396_length_309_cov_15.819149:1-309 changes to pilon.changes [pilon] Writing updated NODE_10396_length_309_cov_15.819149_pilon to pilon.fasta [pilon] Writing NODE_10397_length_309_cov_14.946809:1-309 changes to pilon.changes [pilon] Writing updated NODE_10397_length_309_cov_14.946809_pilon to pilon.fasta [pilon] Writing NODE_10398_length_309_cov_12.691489:1-309 changes to pilon.changes [pilon] Writing updated NODE_10398_length_309_cov_12.691489_pilon to pilon.fasta [pilon] Writing NODE_10399_length_309_cov_12.617021:1-309 changes to pilon.changes [pilon] Writing updated NODE_10399_length_309_cov_12.617021_pilon to pilon.fasta [pilon] Writing NODE_10400_length_309_cov_11.585106:1-309 changes to pilon.changes [pilon] Writing updated NODE_10400_length_309_cov_11.585106_pilon to pilon.fasta [pilon] Writing NODE_10401_length_309_cov_11.398936:1-309 changes to pilon.changes [pilon] Writing updated NODE_10401_length_309_cov_11.398936_pilon to pilon.fasta [pilon] Writing NODE_10402_length_309_cov_11.297872:1-309 changes to pilon.changes [pilon] Writing updated NODE_10402_length_309_cov_11.297872_pilon to pilon.fasta [pilon] Writing NODE_10403_length_309_cov_10.946809:1-309 changes to pilon.changes [pilon] Writing updated NODE_10403_length_309_cov_10.946809_pilon to pilon.fasta [pilon] Writing NODE_10404_length_309_cov_10.356383:1-309 changes to pilon.changes [pilon] Writing updated NODE_10404_length_309_cov_10.356383_pilon to pilon.fasta [pilon] Writing NODE_10405_length_309_cov_8.888298:1-309 changes to pilon.changes [pilon] Writing updated NODE_10405_length_309_cov_8.888298_pilon to pilon.fasta [pilon] Writing NODE_10406_length_309_cov_7.941489:1-309 changes to pilon.changes [pilon] Writing updated NODE_10406_length_309_cov_7.941489_pilon to pilon.fasta [pilon] Writing NODE_10407_length_308_cov_62.475936:1-308 changes to pilon.changes [pilon] Writing updated NODE_10407_length_308_cov_62.475936_pilon to pilon.fasta [pilon] Writing NODE_10408_length_308_cov_28.556150:1-308 changes to pilon.changes [pilon] Writing updated NODE_10408_length_308_cov_28.556150_pilon to pilon.fasta [pilon] Writing NODE_10409_length_308_cov_25.347594:1-308 changes to pilon.changes [pilon] Writing updated NODE_10409_length_308_cov_25.347594_pilon to pilon.fasta [pilon] Writing NODE_10410_length_308_cov_23.668449:1-308 changes to pilon.changes [pilon] Writing updated NODE_10410_length_308_cov_23.668449_pilon to pilon.fasta [pilon] Writing NODE_10411_length_308_cov_23.561497:1-308 changes to pilon.changes [pilon] Writing updated NODE_10411_length_308_cov_23.561497_pilon to pilon.fasta [pilon] Writing NODE_10412_length_308_cov_21.582888:1-308 changes to pilon.changes [pilon] Writing updated NODE_10412_length_308_cov_21.582888_pilon to pilon.fasta [pilon] Writing NODE_10413_length_308_cov_19.839572:1-308 changes to pilon.changes [pilon] Writing updated NODE_10413_length_308_cov_19.839572_pilon to pilon.fasta [pilon] Writing NODE_10414_length_308_cov_17.748663:1-308 changes to pilon.changes [pilon] Writing updated NODE_10414_length_308_cov_17.748663_pilon to pilon.fasta [pilon] Writing NODE_10415_length_308_cov_17.497326:1-308 changes to pilon.changes [pilon] Writing updated NODE_10415_length_308_cov_17.497326_pilon to pilon.fasta [pilon] Writing NODE_10416_length_308_cov_17.085561:1-308 changes to pilon.changes [pilon] Writing updated NODE_10416_length_308_cov_17.085561_pilon to pilon.fasta [pilon] Writing NODE_10417_length_308_cov_14.053476:1-308 changes to pilon.changes [pilon] Writing updated NODE_10417_length_308_cov_14.053476_pilon to pilon.fasta [pilon] Writing NODE_10418_length_308_cov_13.518717:1-308 changes to pilon.changes [pilon] Writing updated NODE_10418_length_308_cov_13.518717_pilon to pilon.fasta [pilon] Writing NODE_10419_length_308_cov_11.262032:1-308 changes to pilon.changes [pilon] Writing updated NODE_10419_length_308_cov_11.262032_pilon to pilon.fasta [pilon] Writing NODE_10420_length_308_cov_10.336898:1-308 changes to pilon.changes [pilon] Writing updated NODE_10420_length_308_cov_10.336898_pilon to pilon.fasta [pilon] Writing NODE_10421_length_308_cov_9.326203:1-308 changes to pilon.changes [pilon] Writing updated NODE_10421_length_308_cov_9.326203_pilon to pilon.fasta [pilon] Writing NODE_10422_length_307_cov_31.897849:1-307 changes to pilon.changes [pilon] Writing updated NODE_10422_length_307_cov_31.897849_pilon to pilon.fasta [pilon] Writing NODE_10423_length_307_cov_28.989247:1-307 changes to pilon.changes [pilon] Writing updated NODE_10423_length_307_cov_28.989247_pilon to pilon.fasta [pilon] Writing NODE_10424_length_307_cov_27.752688:1-307 changes to pilon.changes [pilon] Writing updated NODE_10424_length_307_cov_27.752688_pilon to pilon.fasta [pilon] Writing NODE_10425_length_307_cov_26.107527:1-307 changes to pilon.changes [pilon] Writing updated NODE_10425_length_307_cov_26.107527_pilon to pilon.fasta [pilon] Writing NODE_10426_length_307_cov_24.865591:1-307 changes to pilon.changes [pilon] Writing updated NODE_10426_length_307_cov_24.865591_pilon to pilon.fasta [pilon] Writing NODE_10427_length_307_cov_23.284946:1-307 changes to pilon.changes [pilon] Writing updated NODE_10427_length_307_cov_23.284946_pilon to pilon.fasta [pilon] Writing NODE_10428_length_307_cov_18.924731:1-307 changes to pilon.changes [pilon] Writing updated NODE_10428_length_307_cov_18.924731_pilon to pilon.fasta [pilon] Writing NODE_10429_length_307_cov_17.892473:1-307 changes to pilon.changes [pilon] Writing updated NODE_10429_length_307_cov_17.892473_pilon to pilon.fasta [pilon] Writing NODE_10430_length_307_cov_17.241935:1-307 changes to pilon.changes [pilon] Writing updated NODE_10430_length_307_cov_17.241935_pilon to pilon.fasta [pilon] Writing NODE_10431_length_307_cov_13.005376:1-307 changes to pilon.changes [pilon] Writing updated NODE_10431_length_307_cov_13.005376_pilon to pilon.fasta [pilon] Writing NODE_10432_length_307_cov_11.838710:1-307 changes to pilon.changes [pilon] Writing updated NODE_10432_length_307_cov_11.838710_pilon to pilon.fasta [pilon] Writing NODE_10433_length_307_cov_10.870968:1-307 changes to pilon.changes [pilon] Writing updated NODE_10433_length_307_cov_10.870968_pilon to pilon.fasta [pilon] Writing NODE_10434_length_307_cov_8.500000:1-307 changes to pilon.changes [pilon] Writing updated NODE_10434_length_307_cov_8.500000_pilon to pilon.fasta [pilon] Writing NODE_10435_length_307_cov_8.408602:1-307 changes to pilon.changes [pilon] Writing updated NODE_10435_length_307_cov_8.408602_pilon to pilon.fasta [pilon] Writing NODE_10436_length_307_cov_3.123656:1-307 changes to pilon.changes [pilon] Writing updated NODE_10436_length_307_cov_3.123656_pilon to pilon.fasta [pilon] Writing NODE_10437_length_306_cov_36.145946:1-306 changes to pilon.changes [pilon] Writing updated NODE_10437_length_306_cov_36.145946_pilon to pilon.fasta [pilon] Writing NODE_10438_length_306_cov_27.059459:1-306 changes to pilon.changes [pilon] Writing updated NODE_10438_length_306_cov_27.059459_pilon to pilon.fasta [pilon] Writing NODE_10439_length_306_cov_25.172973:1-306 changes to pilon.changes [pilon] Writing updated NODE_10439_length_306_cov_25.172973_pilon to pilon.fasta [pilon] Writing NODE_10440_length_306_cov_25.167568:1-306 changes to pilon.changes [pilon] Writing updated NODE_10440_length_306_cov_25.167568_pilon to pilon.fasta [pilon] Writing NODE_10441_length_306_cov_25.140541:1-306 changes to pilon.changes [pilon] Writing updated NODE_10441_length_306_cov_25.140541_pilon to pilon.fasta [pilon] Writing NODE_10442_length_306_cov_24.778378:1-306 changes to pilon.changes [pilon] Writing updated NODE_10442_length_306_cov_24.778378_pilon to pilon.fasta [pilon] Writing NODE_10443_length_306_cov_23.270270:1-306 changes to pilon.changes [pilon] Writing updated NODE_10443_length_306_cov_23.270270_pilon to pilon.fasta [pilon] Writing NODE_10444_length_306_cov_23.102703:1-306 changes to pilon.changes [pilon] Writing updated NODE_10444_length_306_cov_23.102703_pilon to pilon.fasta [pilon] Writing NODE_10445_length_306_cov_22.140541:1-306 changes to pilon.changes [pilon] Writing updated NODE_10445_length_306_cov_22.140541_pilon to pilon.fasta [pilon] Writing NODE_10446_length_306_cov_21.270270:1-306 changes to pilon.changes [pilon] Writing updated NODE_10446_length_306_cov_21.270270_pilon to pilon.fasta [pilon] Writing NODE_10447_length_306_cov_20.735135:1-306 changes to pilon.changes [pilon] Writing updated NODE_10447_length_306_cov_20.735135_pilon to pilon.fasta [pilon] Writing NODE_10448_length_306_cov_20.697297:1-306 changes to pilon.changes [pilon] Writing updated NODE_10448_length_306_cov_20.697297_pilon to pilon.fasta [pilon] Writing NODE_10449_length_306_cov_20.632432:1-306 changes to pilon.changes [pilon] Writing updated NODE_10449_length_306_cov_20.632432_pilon to pilon.fasta [pilon] Writing NODE_10450_length_306_cov_19.037838:1-306 changes to pilon.changes [pilon] Writing updated NODE_10450_length_306_cov_19.037838_pilon to pilon.fasta [pilon] Writing NODE_10451_length_306_cov_18.983784:1-306 changes to pilon.changes [pilon] Writing updated NODE_10451_length_306_cov_18.983784_pilon to pilon.fasta [pilon] Writing NODE_10452_length_306_cov_17.610811:1-306 changes to pilon.changes [pilon] Writing updated NODE_10452_length_306_cov_17.610811_pilon to pilon.fasta [pilon] Writing NODE_10453_length_306_cov_17.216216:1-306 changes to pilon.changes [pilon] Writing updated NODE_10453_length_306_cov_17.216216_pilon to pilon.fasta [pilon] Writing NODE_10454_length_306_cov_17.118919:1-306 changes to pilon.changes [pilon] Writing updated NODE_10454_length_306_cov_17.118919_pilon to pilon.fasta [pilon] Writing NODE_10455_length_306_cov_16.783784:1-306 changes to pilon.changes [pilon] Writing updated NODE_10455_length_306_cov_16.783784_pilon to pilon.fasta [pilon] Writing NODE_10456_length_306_cov_16.702703:1-306 changes to pilon.changes [pilon] Writing updated NODE_10456_length_306_cov_16.702703_pilon to pilon.fasta [pilon] Writing NODE_10457_length_306_cov_16.243243:1-306 changes to pilon.changes [pilon] Writing updated NODE_10457_length_306_cov_16.243243_pilon to pilon.fasta [pilon] Writing NODE_10458_length_306_cov_16.059459:1-306 changes to pilon.changes [pilon] Writing updated NODE_10458_length_306_cov_16.059459_pilon to pilon.fasta [pilon] Writing NODE_10459_length_306_cov_15.481081:1-306 changes to pilon.changes [pilon] Writing updated NODE_10459_length_306_cov_15.481081_pilon to pilon.fasta [pilon] Writing NODE_10460_length_306_cov_15.102703:1-306 changes to pilon.changes [pilon] Writing updated NODE_10460_length_306_cov_15.102703_pilon to pilon.fasta [pilon] Writing NODE_10461_length_306_cov_14.978378:1-306 changes to pilon.changes [pilon] Writing updated NODE_10461_length_306_cov_14.978378_pilon to pilon.fasta [pilon] Writing NODE_10462_length_306_cov_14.881081:1-306 changes to pilon.changes [pilon] Writing updated NODE_10462_length_306_cov_14.881081_pilon to pilon.fasta [pilon] Writing NODE_10463_length_306_cov_14.481081:1-306 changes to pilon.changes [pilon] Writing updated NODE_10463_length_306_cov_14.481081_pilon to pilon.fasta [pilon] Writing NODE_10464_length_306_cov_13.167568:1-306 changes to pilon.changes [pilon] Writing updated NODE_10464_length_306_cov_13.167568_pilon to pilon.fasta [pilon] Writing NODE_10465_length_306_cov_12.848649:1-306 changes to pilon.changes [pilon] Writing updated NODE_10465_length_306_cov_12.848649_pilon to pilon.fasta [pilon] Writing NODE_10466_length_306_cov_12.637838:1-306 changes to pilon.changes [pilon] Writing updated NODE_10466_length_306_cov_12.637838_pilon to pilon.fasta [pilon] Writing NODE_10467_length_306_cov_11.864865:1-306 changes to pilon.changes [pilon] Writing updated NODE_10467_length_306_cov_11.864865_pilon to pilon.fasta [pilon] Writing NODE_10468_length_306_cov_11.762162:1-306 changes to pilon.changes [pilon] Writing updated NODE_10468_length_306_cov_11.762162_pilon to pilon.fasta [pilon] Writing NODE_10469_length_306_cov_11.610811:1-306 changes to pilon.changes [pilon] Writing updated NODE_10469_length_306_cov_11.610811_pilon to pilon.fasta [pilon] Writing NODE_10470_length_306_cov_11.448649:1-306 changes to pilon.changes [pilon] Writing updated NODE_10470_length_306_cov_11.448649_pilon to pilon.fasta [pilon] Writing NODE_10471_length_306_cov_11.070270:1-306 changes to pilon.changes [pilon] Writing updated NODE_10471_length_306_cov_11.070270_pilon to pilon.fasta [pilon] Writing NODE_10472_length_306_cov_10.729730:1-306 changes to pilon.changes [pilon] Writing updated NODE_10472_length_306_cov_10.729730_pilon to pilon.fasta [pilon] Writing NODE_10473_length_306_cov_9.367568:1-306 changes to pilon.changes [pilon] Writing updated NODE_10473_length_306_cov_9.367568_pilon to pilon.fasta [pilon] Writing NODE_10474_length_306_cov_9.362162:1-306 changes to pilon.changes [pilon] Writing updated NODE_10474_length_306_cov_9.362162_pilon to pilon.fasta [pilon] Writing NODE_10475_length_306_cov_9.189189:1-306 changes to pilon.changes [pilon] Writing updated NODE_10475_length_306_cov_9.189189_pilon to pilon.fasta [pilon] Writing NODE_10476_length_306_cov_9.091892:1-306 changes to pilon.changes [pilon] Writing updated NODE_10476_length_306_cov_9.091892_pilon to pilon.fasta [pilon] Writing NODE_10477_length_306_cov_8.394595:1-306 changes to pilon.changes [pilon] Writing updated NODE_10477_length_306_cov_8.394595_pilon to pilon.fasta [pilon] Writing NODE_10478_length_306_cov_8.178378:1-306 changes to pilon.changes [pilon] Writing updated NODE_10478_length_306_cov_8.178378_pilon to pilon.fasta [pilon] Writing NODE_10479_length_306_cov_8.172973:1-306 changes to pilon.changes [pilon] Writing updated NODE_10479_length_306_cov_8.172973_pilon to pilon.fasta [pilon] Writing NODE_10480_length_306_cov_7.967568:1-306 changes to pilon.changes [pilon] Writing updated NODE_10480_length_306_cov_7.967568_pilon to pilon.fasta [pilon] Writing NODE_10481_length_306_cov_7.513514:1-306 changes to pilon.changes [pilon] Writing updated NODE_10481_length_306_cov_7.513514_pilon to pilon.fasta [pilon] Writing NODE_10482_length_306_cov_7.491892:1-306 changes to pilon.changes [pilon] Writing updated NODE_10482_length_306_cov_7.491892_pilon to pilon.fasta [pilon] Writing NODE_10483_length_306_cov_6.800000:1-306 changes to pilon.changes [pilon] Writing updated NODE_10483_length_306_cov_6.800000_pilon to pilon.fasta [pilon] Writing NODE_10484_length_306_cov_5.956757:1-306 changes to pilon.changes [pilon] Writing updated NODE_10484_length_306_cov_5.956757_pilon to pilon.fasta [pilon] Writing NODE_10485_length_305_cov_55.505435:1-305 changes to pilon.changes [pilon] Writing updated NODE_10485_length_305_cov_55.505435_pilon to pilon.fasta [pilon] Writing NODE_10486_length_305_cov_40.717391:1-305 changes to pilon.changes [pilon] Writing updated NODE_10486_length_305_cov_40.717391_pilon to pilon.fasta [pilon] Writing NODE_10487_length_305_cov_31.092391:1-305 changes to pilon.changes [pilon] Writing updated NODE_10487_length_305_cov_31.092391_pilon to pilon.fasta [pilon] Writing NODE_10488_length_305_cov_29.005435:1-305 changes to pilon.changes [pilon] Writing updated NODE_10488_length_305_cov_29.005435_pilon to pilon.fasta [pilon] Writing NODE_10489_length_305_cov_26.130435:1-305 changes to pilon.changes [pilon] Writing updated NODE_10489_length_305_cov_26.130435_pilon to pilon.fasta [pilon] Writing NODE_10490_length_305_cov_23.298913:1-305 changes to pilon.changes [pilon] Writing updated NODE_10490_length_305_cov_23.298913_pilon to pilon.fasta [pilon] Writing NODE_10491_length_305_cov_20.875000:1-305 changes to pilon.changes [pilon] Writing updated NODE_10491_length_305_cov_20.875000_pilon to pilon.fasta [pilon] Writing NODE_10492_length_305_cov_18.869565:1-305 changes to pilon.changes [pilon] Writing updated NODE_10492_length_305_cov_18.869565_pilon to pilon.fasta [pilon] Writing NODE_10493_length_305_cov_18.418478:1-305 changes to pilon.changes [pilon] Writing updated NODE_10493_length_305_cov_18.418478_pilon to pilon.fasta [pilon] Writing NODE_10494_length_305_cov_15.875000:1-305 changes to pilon.changes [pilon] Writing updated NODE_10494_length_305_cov_15.875000_pilon to pilon.fasta [pilon] Writing NODE_10495_length_305_cov_13.331522:1-305 changes to pilon.changes [pilon] Writing updated NODE_10495_length_305_cov_13.331522_pilon to pilon.fasta [pilon] Writing NODE_10496_length_305_cov_11.081522:1-305 changes to pilon.changes [pilon] Writing updated NODE_10496_length_305_cov_11.081522_pilon to pilon.fasta [pilon] Writing NODE_10497_length_305_cov_8.625000:1-305 changes to pilon.changes [pilon] Writing updated NODE_10497_length_305_cov_8.625000_pilon to pilon.fasta [pilon] Writing NODE_10498_length_304_cov_46.568306:1-304 changes to pilon.changes [pilon] Writing updated NODE_10498_length_304_cov_46.568306_pilon to pilon.fasta [pilon] Writing NODE_10499_length_304_cov_32.027322:1-304 changes to pilon.changes [pilon] Writing updated NODE_10499_length_304_cov_32.027322_pilon to pilon.fasta [pilon] Writing NODE_10500_length_304_cov_31.103825:1-304 changes to pilon.changes [pilon] Writing updated NODE_10500_length_304_cov_31.103825_pilon to pilon.fasta [pilon] Writing NODE_10501_length_304_cov_26.021858:1-304 changes to pilon.changes [pilon] Writing updated NODE_10501_length_304_cov_26.021858_pilon to pilon.fasta [pilon] Writing NODE_10502_length_304_cov_25.896175:1-304 changes to pilon.changes [pilon] Writing updated NODE_10502_length_304_cov_25.896175_pilon to pilon.fasta [pilon] Writing NODE_10503_length_304_cov_24.956284:1-304 changes to pilon.changes [pilon] Writing updated NODE_10503_length_304_cov_24.956284_pilon to pilon.fasta [pilon] Writing NODE_10504_length_304_cov_22.169399:1-304 changes to pilon.changes [pilon] Writing updated NODE_10504_length_304_cov_22.169399_pilon to pilon.fasta [pilon] Writing NODE_10505_length_304_cov_20.409836:1-304 changes to pilon.changes [pilon] Writing updated NODE_10505_length_304_cov_20.409836_pilon to pilon.fasta [pilon] Writing NODE_10506_length_304_cov_20.251366:1-304 changes to pilon.changes [pilon] Writing updated NODE_10506_length_304_cov_20.251366_pilon to pilon.fasta [pilon] Writing NODE_10507_length_304_cov_18.628415:1-304 changes to pilon.changes [pilon] Writing updated NODE_10507_length_304_cov_18.628415_pilon to pilon.fasta [pilon] Writing NODE_10508_length_304_cov_16.245902:1-304 changes to pilon.changes [pilon] Writing updated NODE_10508_length_304_cov_16.245902_pilon to pilon.fasta [pilon] Writing NODE_10509_length_304_cov_15.513661:1-304 changes to pilon.changes [pilon] Writing updated NODE_10509_length_304_cov_15.513661_pilon to pilon.fasta [pilon] Writing NODE_10510_length_304_cov_12.557377:1-304 changes to pilon.changes [pilon] Writing updated NODE_10510_length_304_cov_12.557377_pilon to pilon.fasta [pilon] Writing NODE_10511_length_304_cov_12.256831:1-304 changes to pilon.changes [pilon] Writing updated NODE_10511_length_304_cov_12.256831_pilon to pilon.fasta [pilon] Writing NODE_10512_length_304_cov_12.071038:1-304 changes to pilon.changes [pilon] Writing updated NODE_10512_length_304_cov_12.071038_pilon to pilon.fasta [pilon] Writing NODE_10513_length_304_cov_11.918033:1-304 changes to pilon.changes [pilon] Writing updated NODE_10513_length_304_cov_11.918033_pilon to pilon.fasta [pilon] Writing NODE_10514_length_304_cov_10.967213:1-304 changes to pilon.changes [pilon] Writing updated NODE_10514_length_304_cov_10.967213_pilon to pilon.fasta [pilon] Writing NODE_10515_length_304_cov_10.961749:1-304 changes to pilon.changes [pilon] Writing updated NODE_10515_length_304_cov_10.961749_pilon to pilon.fasta [pilon] Writing NODE_10516_length_304_cov_10.715847:1-304 changes to pilon.changes [pilon] Writing updated NODE_10516_length_304_cov_10.715847_pilon to pilon.fasta [pilon] Writing NODE_10517_length_304_cov_8.693989:1-304 changes to pilon.changes [pilon] Writing updated NODE_10517_length_304_cov_8.693989_pilon to pilon.fasta [pilon] Writing NODE_10518_length_304_cov_1.420765:1-304 changes to pilon.changes [pilon] Writing updated NODE_10518_length_304_cov_1.420765_pilon to pilon.fasta [pilon] Writing NODE_10519_length_303_cov_36.791209:1-303 changes to pilon.changes [pilon] Writing updated NODE_10519_length_303_cov_36.791209_pilon to pilon.fasta [pilon] Writing NODE_10520_length_303_cov_34.516484:1-303 changes to pilon.changes [pilon] Writing updated NODE_10520_length_303_cov_34.516484_pilon to pilon.fasta [pilon] Writing NODE_10521_length_303_cov_31.368132:1-303 changes to pilon.changes [pilon] Writing updated NODE_10521_length_303_cov_31.368132_pilon to pilon.fasta [pilon] Writing NODE_10522_length_303_cov_30.516484:1-303 changes to pilon.changes [pilon] Writing updated NODE_10522_length_303_cov_30.516484_pilon to pilon.fasta [pilon] Writing NODE_10523_length_303_cov_29.428571:1-303 changes to pilon.changes [pilon] Writing updated NODE_10523_length_303_cov_29.428571_pilon to pilon.fasta [pilon] Writing NODE_10524_length_303_cov_29.148352:1-303 changes to pilon.changes [pilon] Writing updated NODE_10524_length_303_cov_29.148352_pilon to pilon.fasta [pilon] Writing NODE_10525_length_303_cov_27.593407:1-303 changes to pilon.changes [pilon] Writing updated NODE_10525_length_303_cov_27.593407_pilon to pilon.fasta [pilon] Writing NODE_10526_length_303_cov_26.208791:1-303 changes to pilon.changes [pilon] Writing updated NODE_10526_length_303_cov_26.208791_pilon to pilon.fasta [pilon] Writing NODE_10527_length_303_cov_26.137363:1-303 changes to pilon.changes [pilon] Writing updated NODE_10527_length_303_cov_26.137363_pilon to pilon.fasta [pilon] Writing NODE_10528_length_303_cov_25.225275:1-303 changes to pilon.changes [pilon] Writing updated NODE_10528_length_303_cov_25.225275_pilon to pilon.fasta [pilon] Writing NODE_10529_length_303_cov_24.774725:1-303 changes to pilon.changes [pilon] Writing updated NODE_10529_length_303_cov_24.774725_pilon to pilon.fasta [pilon] Writing NODE_10530_length_303_cov_23.912088:1-303 changes to pilon.changes [pilon] Writing updated NODE_10530_length_303_cov_23.912088_pilon to pilon.fasta [pilon] Writing NODE_10531_length_303_cov_23.895604:1-303 changes to pilon.changes [pilon] Writing updated NODE_10531_length_303_cov_23.895604_pilon to pilon.fasta [pilon] Writing NODE_10532_length_303_cov_23.060440:1-303 changes to pilon.changes [pilon] Writing updated NODE_10532_length_303_cov_23.060440_pilon to pilon.fasta [pilon] Writing NODE_10533_length_303_cov_21.989011:1-303 changes to pilon.changes [pilon] Writing updated NODE_10533_length_303_cov_21.989011_pilon to pilon.fasta [pilon] Writing NODE_10534_length_303_cov_21.884615:1-303 changes to pilon.changes [pilon] Writing updated NODE_10534_length_303_cov_21.884615_pilon to pilon.fasta [pilon] Writing NODE_10535_length_303_cov_21.307692:1-303 changes to pilon.changes [pilon] Writing updated NODE_10535_length_303_cov_21.307692_pilon to pilon.fasta [pilon] Writing NODE_10536_length_303_cov_20.719780:1-303 changes to pilon.changes [pilon] Writing updated NODE_10536_length_303_cov_20.719780_pilon to pilon.fasta [pilon] Writing NODE_10537_length_303_cov_19.846154:1-303 changes to pilon.changes [pilon] Writing updated NODE_10537_length_303_cov_19.846154_pilon to pilon.fasta [pilon] Writing NODE_10538_length_303_cov_19.384615:1-303 changes to pilon.changes [pilon] Writing updated NODE_10538_length_303_cov_19.384615_pilon to pilon.fasta [pilon] Writing NODE_10539_length_303_cov_19.010989:1-303 changes to pilon.changes [pilon] Writing updated NODE_10539_length_303_cov_19.010989_pilon to pilon.fasta [pilon] Writing NODE_10540_length_303_cov_19.010989:1-303 changes to pilon.changes [pilon] Writing updated NODE_10540_length_303_cov_19.010989_pilon to pilon.fasta [pilon] Writing NODE_10541_length_303_cov_18.686813:1-303 changes to pilon.changes [pilon] Writing updated NODE_10541_length_303_cov_18.686813_pilon to pilon.fasta [pilon] Writing NODE_10542_length_303_cov_18.527473:1-303 changes to pilon.changes [pilon] Writing updated NODE_10542_length_303_cov_18.527473_pilon to pilon.fasta [pilon] Writing NODE_10543_length_303_cov_17.703297:1-303 changes to pilon.changes [pilon] Writing updated NODE_10543_length_303_cov_17.703297_pilon to pilon.fasta [pilon] Writing NODE_10544_length_303_cov_16.923077:1-303 changes to pilon.changes [pilon] Writing updated NODE_10544_length_303_cov_16.923077_pilon to pilon.fasta [pilon] Writing NODE_10545_length_303_cov_16.494505:1-303 changes to pilon.changes [pilon] Writing updated NODE_10545_length_303_cov_16.494505_pilon to pilon.fasta [pilon] Writing NODE_10546_length_303_cov_15.554945:1-303 changes to pilon.changes [pilon] Writing updated NODE_10546_length_303_cov_15.554945_pilon to pilon.fasta [pilon] Writing NODE_10547_length_303_cov_15.010989:1-303 changes to pilon.changes [pilon] Writing updated NODE_10547_length_303_cov_15.010989_pilon to pilon.fasta [pilon] Writing NODE_10548_length_303_cov_14.609890:1-303 changes to pilon.changes [pilon] Writing updated NODE_10548_length_303_cov_14.609890_pilon to pilon.fasta [pilon] Writing NODE_10549_length_303_cov_14.285714:1-303 changes to pilon.changes [pilon] Writing updated NODE_10549_length_303_cov_14.285714_pilon to pilon.fasta [pilon] Writing NODE_10550_length_303_cov_13.065934:1-303 changes to pilon.changes [pilon] Writing updated NODE_10550_length_303_cov_13.065934_pilon to pilon.fasta [pilon] Writing NODE_10551_length_303_cov_12.560440:1-303 changes to pilon.changes [pilon] Writing updated NODE_10551_length_303_cov_12.560440_pilon to pilon.fasta [pilon] Writing NODE_10552_length_303_cov_11.780220:1-303 changes to pilon.changes [pilon] Writing updated NODE_10552_length_303_cov_11.780220_pilon to pilon.fasta [pilon] Writing NODE_10553_length_303_cov_11.258242:1-303 changes to pilon.changes [pilon] Writing updated NODE_10553_length_303_cov_11.258242_pilon to pilon.fasta [pilon] Writing NODE_10554_length_303_cov_10.126374:1-303 changes to pilon.changes [pilon] Writing updated NODE_10554_length_303_cov_10.126374_pilon to pilon.fasta [pilon] Writing NODE_10555_length_303_cov_9.906593:1-303 changes to pilon.changes [pilon] Writing updated NODE_10555_length_303_cov_9.906593_pilon to pilon.fasta [pilon] Writing NODE_10556_length_303_cov_9.434066:1-303 changes to pilon.changes [pilon] Writing updated NODE_10556_length_303_cov_9.434066_pilon to pilon.fasta [pilon] Writing NODE_10557_length_303_cov_9.357143:1-303 changes to pilon.changes [pilon] Writing updated NODE_10557_length_303_cov_9.357143_pilon to pilon.fasta [pilon] Writing NODE_10558_length_303_cov_9.324176:1-303 changes to pilon.changes [pilon] Writing updated NODE_10558_length_303_cov_9.324176_pilon to pilon.fasta [pilon] Writing NODE_10559_length_303_cov_9.203297:1-303 changes to pilon.changes [pilon] Writing updated NODE_10559_length_303_cov_9.203297_pilon to pilon.fasta [pilon] Writing NODE_10560_length_303_cov_9.060440:1-303 changes to pilon.changes [pilon] Writing updated NODE_10560_length_303_cov_9.060440_pilon to pilon.fasta [pilon] Writing NODE_10561_length_303_cov_8.741758:1-303 changes to pilon.changes [pilon] Writing updated NODE_10561_length_303_cov_8.741758_pilon to pilon.fasta [pilon] Writing NODE_10562_length_303_cov_8.626374:1-303 changes to pilon.changes [pilon] Writing updated NODE_10562_length_303_cov_8.626374_pilon to pilon.fasta [pilon] Writing NODE_10563_length_303_cov_8.346154:1-303 changes to pilon.changes [pilon] Writing updated NODE_10563_length_303_cov_8.346154_pilon to pilon.fasta [pilon] Writing NODE_10564_length_303_cov_8.280220:1-303 changes to pilon.changes [pilon] Writing updated NODE_10564_length_303_cov_8.280220_pilon to pilon.fasta [pilon] Writing NODE_10565_length_303_cov_7.912088:1-303 changes to pilon.changes [pilon] Writing updated NODE_10565_length_303_cov_7.912088_pilon to pilon.fasta [pilon] Writing NODE_10566_length_303_cov_6.824176:1-303 changes to pilon.changes [pilon] Writing updated NODE_10566_length_303_cov_6.824176_pilon to pilon.fasta [pilon] Writing NODE_10567_length_303_cov_6.818681:1-303 changes to pilon.changes [pilon] Writing updated NODE_10567_length_303_cov_6.818681_pilon to pilon.fasta [pilon] Writing NODE_10568_length_303_cov_6.785714:1-303 changes to pilon.changes [pilon] Writing updated NODE_10568_length_303_cov_6.785714_pilon to pilon.fasta [pilon] Writing NODE_10569_length_303_cov_6.703297:1-303 changes to pilon.changes [pilon] Writing updated NODE_10569_length_303_cov_6.703297_pilon to pilon.fasta [pilon] Writing NODE_10570_length_303_cov_5.456044:1-303 changes to pilon.changes [pilon] Writing updated NODE_10570_length_303_cov_5.456044_pilon to pilon.fasta [pilon] Writing NODE_10571_length_302_cov_28.022099:1-302 changes to pilon.changes [pilon] Writing updated NODE_10571_length_302_cov_28.022099_pilon to pilon.fasta [pilon] Writing NODE_10572_length_302_cov_24.740331:1-302 changes to pilon.changes [pilon] Writing updated NODE_10572_length_302_cov_24.740331_pilon to pilon.fasta [pilon] Writing NODE_10573_length_302_cov_22.707182:1-302 changes to pilon.changes [pilon] Writing updated NODE_10573_length_302_cov_22.707182_pilon to pilon.fasta [pilon] Writing NODE_10574_length_302_cov_22.138122:1-302 changes to pilon.changes [pilon] Writing updated NODE_10574_length_302_cov_22.138122_pilon to pilon.fasta [pilon] Writing NODE_10575_length_302_cov_21.812155:1-302 changes to pilon.changes [pilon] Writing updated NODE_10575_length_302_cov_21.812155_pilon to pilon.fasta [pilon] Writing NODE_10576_length_302_cov_19.011050:1-302 changes to pilon.changes [pilon] Writing updated NODE_10576_length_302_cov_19.011050_pilon to pilon.fasta [pilon] Writing NODE_10577_length_302_cov_18.773481:1-302 changes to pilon.changes [pilon] Writing updated NODE_10577_length_302_cov_18.773481_pilon to pilon.fasta [pilon] Writing NODE_10578_length_302_cov_18.176796:1-302 changes to pilon.changes [pilon] Writing updated NODE_10578_length_302_cov_18.176796_pilon to pilon.fasta [pilon] Writing NODE_10579_length_302_cov_17.966851:1-302 changes to pilon.changes [pilon] Writing updated NODE_10579_length_302_cov_17.966851_pilon to pilon.fasta [pilon] Writing NODE_10580_length_302_cov_16.762431:1-302 changes to pilon.changes [pilon] Writing updated NODE_10580_length_302_cov_16.762431_pilon to pilon.fasta [pilon] Writing NODE_10581_length_302_cov_15.508287:1-302 changes to pilon.changes [pilon] Writing updated NODE_10581_length_302_cov_15.508287_pilon to pilon.fasta [pilon] Writing NODE_10582_length_302_cov_15.381215:1-302 changes to pilon.changes [pilon] Writing updated NODE_10582_length_302_cov_15.381215_pilon to pilon.fasta [pilon] Writing NODE_10583_length_302_cov_15.248619:1-302 changes to pilon.changes [pilon] Writing updated NODE_10583_length_302_cov_15.248619_pilon to pilon.fasta [pilon] Writing NODE_10584_length_302_cov_14.685083:1-302 changes to pilon.changes [pilon] Writing updated NODE_10584_length_302_cov_14.685083_pilon to pilon.fasta [pilon] Writing NODE_10585_length_302_cov_14.425414:1-302 changes to pilon.changes [pilon] Writing updated NODE_10585_length_302_cov_14.425414_pilon to pilon.fasta [pilon] Writing NODE_10586_length_302_cov_13.436464:1-302 changes to pilon.changes [pilon] Writing updated NODE_10586_length_302_cov_13.436464_pilon to pilon.fasta [pilon] Writing NODE_10587_length_302_cov_13.243094:1-302 changes to pilon.changes [pilon] Writing updated NODE_10587_length_302_cov_13.243094_pilon to pilon.fasta [pilon] Writing NODE_10588_length_302_cov_10.497238:1-302 changes to pilon.changes [pilon] Writing updated NODE_10588_length_302_cov_10.497238_pilon to pilon.fasta [pilon] Writing NODE_10589_length_302_cov_7.182320:1-302 changes to pilon.changes [pilon] Writing updated NODE_10589_length_302_cov_7.182320_pilon to pilon.fasta [pilon] Writing NODE_10590_length_301_cov_39.600000:1-301 changes to pilon.changes [pilon] Writing updated NODE_10590_length_301_cov_39.600000_pilon to pilon.fasta [pilon] Writing NODE_10591_length_301_cov_24.500000:1-301 changes to pilon.changes [pilon] Writing updated NODE_10591_length_301_cov_24.500000_pilon to pilon.fasta [pilon] Writing NODE_10592_length_301_cov_23.161111:1-301 changes to pilon.changes [pilon] Writing updated NODE_10592_length_301_cov_23.161111_pilon to pilon.fasta [pilon] Writing NODE_10593_length_301_cov_22.344444:1-301 changes to pilon.changes [pilon] Writing updated NODE_10593_length_301_cov_22.344444_pilon to pilon.fasta [pilon] Writing NODE_10594_length_301_cov_21.244444:1-301 changes to pilon.changes [pilon] Writing updated NODE_10594_length_301_cov_21.244444_pilon to pilon.fasta [pilon] Writing NODE_10595_length_301_cov_16.405556:1-301 changes to pilon.changes [pilon] Writing updated NODE_10595_length_301_cov_16.405556_pilon to pilon.fasta [pilon] Writing NODE_10596_length_301_cov_16.322222:1-301 changes to pilon.changes [pilon] Writing updated NODE_10596_length_301_cov_16.322222_pilon to pilon.fasta [pilon] Writing NODE_10597_length_301_cov_9.533333:1-301 changes to pilon.changes [pilon] Writing updated NODE_10597_length_301_cov_9.533333_pilon to pilon.fasta [pilon] Writing NODE_10598_length_301_cov_7.411111:1-301 changes to pilon.changes [pilon] Writing updated NODE_10598_length_301_cov_7.411111_pilon to pilon.fasta [pilon] Writing NODE_10599_length_301_cov_5.250000:1-301 changes to pilon.changes [pilon] Writing updated NODE_10599_length_301_cov_5.250000_pilon to pilon.fasta [pilon] Writing NODE_10600_length_301_cov_5.072222:1-301 changes to pilon.changes [pilon] Writing updated NODE_10600_length_301_cov_5.072222_pilon to pilon.fasta [pilon] Writing NODE_10601_length_300_cov_40.687151:1-300 changes to pilon.changes [pilon] Writing updated NODE_10601_length_300_cov_40.687151_pilon to pilon.fasta [pilon] Writing NODE_10602_length_300_cov_36.726257:1-300 changes to pilon.changes [pilon] Writing updated NODE_10602_length_300_cov_36.726257_pilon to pilon.fasta [pilon] Writing NODE_10603_length_300_cov_36.541899:1-300 changes to pilon.changes [pilon] Writing updated NODE_10603_length_300_cov_36.541899_pilon to pilon.fasta [pilon] Writing NODE_10604_length_300_cov_33.100559:1-300 changes to pilon.changes [pilon] Writing updated NODE_10604_length_300_cov_33.100559_pilon to pilon.fasta [pilon] Writing NODE_10605_length_300_cov_29.715084:1-300 changes to pilon.changes [pilon] Writing updated NODE_10605_length_300_cov_29.715084_pilon to pilon.fasta [pilon] Writing NODE_10606_length_300_cov_27.703911:1-300 changes to pilon.changes [pilon] Writing updated NODE_10606_length_300_cov_27.703911_pilon to pilon.fasta [pilon] Writing NODE_10607_length_300_cov_27.156425:1-300 changes to pilon.changes [pilon] Writing updated NODE_10607_length_300_cov_27.156425_pilon to pilon.fasta [pilon] Writing NODE_10608_length_300_cov_26.927374:1-300 changes to pilon.changes [pilon] Writing updated NODE_10608_length_300_cov_26.927374_pilon to pilon.fasta [pilon] Writing NODE_10609_length_300_cov_26.692737:1-300 changes to pilon.changes [pilon] Writing updated NODE_10609_length_300_cov_26.692737_pilon to pilon.fasta [pilon] Writing NODE_10610_length_300_cov_26.620112:1-300 changes to pilon.changes [pilon] Writing updated NODE_10610_length_300_cov_26.620112_pilon to pilon.fasta [pilon] Writing NODE_10611_length_300_cov_26.441341:1-300 changes to pilon.changes [pilon] Writing updated NODE_10611_length_300_cov_26.441341_pilon to pilon.fasta [pilon] Writing NODE_10612_length_300_cov_25.100559:1-300 changes to pilon.changes [pilon] Writing updated NODE_10612_length_300_cov_25.100559_pilon to pilon.fasta [pilon] Writing NODE_10613_length_300_cov_24.927374:1-300 changes to pilon.changes [pilon] Writing updated NODE_10613_length_300_cov_24.927374_pilon to pilon.fasta [pilon] Writing NODE_10614_length_300_cov_24.441341:1-300 changes to pilon.changes [pilon] Writing updated NODE_10614_length_300_cov_24.441341_pilon to pilon.fasta [pilon] Writing NODE_10615_length_300_cov_24.340782:1-300 changes to pilon.changes [pilon] Writing updated NODE_10615_length_300_cov_24.340782_pilon to pilon.fasta [pilon] Writing NODE_10616_length_300_cov_24.284916:1-300 changes to pilon.changes [pilon] Writing updated NODE_10616_length_300_cov_24.284916_pilon to pilon.fasta [pilon] Writing NODE_10617_length_300_cov_24.139665:1-300 changes to pilon.changes [pilon] Writing updated NODE_10617_length_300_cov_24.139665_pilon to pilon.fasta [pilon] Writing NODE_10618_length_300_cov_23.413408:1-300 changes to pilon.changes [pilon] Writing updated NODE_10618_length_300_cov_23.413408_pilon to pilon.fasta [pilon] Writing NODE_10619_length_300_cov_23.162011:1-300 changes to pilon.changes [pilon] Writing updated NODE_10619_length_300_cov_23.162011_pilon to pilon.fasta [pilon] Writing NODE_10620_length_300_cov_22.435754:1-300 changes to pilon.changes [pilon] Writing updated NODE_10620_length_300_cov_22.435754_pilon to pilon.fasta [pilon] Writing NODE_10621_length_300_cov_22.217877:1-300 changes to pilon.changes [pilon] Writing updated NODE_10621_length_300_cov_22.217877_pilon to pilon.fasta [pilon] Writing NODE_10622_length_300_cov_22.212291:1-300 changes to pilon.changes [pilon] Writing updated NODE_10622_length_300_cov_22.212291_pilon to pilon.fasta [pilon] Writing NODE_10623_length_300_cov_21.843575:1-300 changes to pilon.changes [pilon] Writing updated NODE_10623_length_300_cov_21.843575_pilon to pilon.fasta [pilon] Writing NODE_10624_length_300_cov_21.446927:1-300 changes to pilon.changes [pilon] Writing updated NODE_10624_length_300_cov_21.446927_pilon to pilon.fasta [pilon] Writing NODE_10625_length_300_cov_20.497207:1-300 changes to pilon.changes [pilon] Writing updated NODE_10625_length_300_cov_20.497207_pilon to pilon.fasta [pilon] Writing NODE_10626_length_300_cov_20.050279:1-300 changes to pilon.changes [pilon] Writing updated NODE_10626_length_300_cov_20.050279_pilon to pilon.fasta [pilon] Writing NODE_10627_length_300_cov_19.385475:1-300 changes to pilon.changes [pilon] Writing updated NODE_10627_length_300_cov_19.385475_pilon to pilon.fasta [pilon] Writing NODE_10628_length_300_cov_19.351955:1-300 changes to pilon.changes [pilon] Writing updated NODE_10628_length_300_cov_19.351955_pilon to pilon.fasta [pilon] Writing NODE_10629_length_300_cov_18.759777:1-300 changes to pilon.changes [pilon] Writing updated NODE_10629_length_300_cov_18.759777_pilon to pilon.fasta [pilon] Writing NODE_10630_length_300_cov_18.223464:1-300 changes to pilon.changes [pilon] Writing updated NODE_10630_length_300_cov_18.223464_pilon to pilon.fasta [pilon] Writing NODE_10631_length_300_cov_17.871508:1-300 changes to pilon.changes [pilon] Writing updated NODE_10631_length_300_cov_17.871508_pilon to pilon.fasta [pilon] Writing NODE_10632_length_300_cov_16.770950:1-300 changes to pilon.changes [pilon] Writing updated NODE_10632_length_300_cov_16.770950_pilon to pilon.fasta [pilon] Writing NODE_10633_length_300_cov_16.245810:1-300 changes to pilon.changes [pilon] Writing updated NODE_10633_length_300_cov_16.245810_pilon to pilon.fasta [pilon] Writing NODE_10634_length_300_cov_15.804469:1-300 changes to pilon.changes [pilon] Writing updated NODE_10634_length_300_cov_15.804469_pilon to pilon.fasta [pilon] Writing NODE_10635_length_300_cov_15.636872:1-300 changes to pilon.changes [pilon] Writing updated NODE_10635_length_300_cov_15.636872_pilon to pilon.fasta [pilon] Writing NODE_10636_length_300_cov_15.100559:1-300 changes to pilon.changes [pilon] Writing updated NODE_10636_length_300_cov_15.100559_pilon to pilon.fasta [pilon] Writing NODE_10637_length_300_cov_14.944134:1-300 changes to pilon.changes [pilon] Writing updated NODE_10637_length_300_cov_14.944134_pilon to pilon.fasta [pilon] Writing NODE_10638_length_300_cov_14.541899:1-300 changes to pilon.changes [pilon] Writing updated NODE_10638_length_300_cov_14.541899_pilon to pilon.fasta [pilon] Writing NODE_10639_length_300_cov_14.525140:1-300 changes to pilon.changes [pilon] Writing updated NODE_10639_length_300_cov_14.525140_pilon to pilon.fasta [pilon] Writing NODE_10640_length_300_cov_13.748603:1-300 changes to pilon.changes [pilon] Writing updated NODE_10640_length_300_cov_13.748603_pilon to pilon.fasta [pilon] Writing NODE_10641_length_300_cov_13.162011:1-300 changes to pilon.changes [pilon] Writing updated NODE_10641_length_300_cov_13.162011_pilon to pilon.fasta [pilon] Writing NODE_10642_length_300_cov_12.977654:1-300 changes to pilon.changes [pilon] Writing updated NODE_10642_length_300_cov_12.977654_pilon to pilon.fasta [pilon] Writing NODE_10643_length_300_cov_12.871508:1-300 changes to pilon.changes [pilon] Writing updated NODE_10643_length_300_cov_12.871508_pilon to pilon.fasta [pilon] Writing NODE_10644_length_300_cov_12.731844:1-300 changes to pilon.changes [pilon] Writing updated NODE_10644_length_300_cov_12.731844_pilon to pilon.fasta [pilon] Writing NODE_10645_length_300_cov_12.614525:1-300 changes to pilon.changes [pilon] Writing updated NODE_10645_length_300_cov_12.614525_pilon to pilon.fasta [pilon] Writing NODE_10646_length_300_cov_11.787709:1-300 changes to pilon.changes [pilon] Writing updated NODE_10646_length_300_cov_11.787709_pilon to pilon.fasta [pilon] Writing NODE_10647_length_300_cov_11.692737:1-300 changes to pilon.changes [pilon] Writing updated NODE_10647_length_300_cov_11.692737_pilon to pilon.fasta [pilon] Writing NODE_10648_length_300_cov_11.474860:1-300 changes to pilon.changes [pilon] Writing updated NODE_10648_length_300_cov_11.474860_pilon to pilon.fasta [pilon] Writing NODE_10649_length_300_cov_11.385475:1-300 changes to pilon.changes [pilon] Writing updated NODE_10649_length_300_cov_11.385475_pilon to pilon.fasta [pilon] Writing NODE_10650_length_300_cov_11.206704:1-300 changes to pilon.changes [pilon] Writing updated NODE_10650_length_300_cov_11.206704_pilon to pilon.fasta [pilon] Writing NODE_10651_length_300_cov_11.033520:1-300 changes to pilon.changes [pilon] Writing updated NODE_10651_length_300_cov_11.033520_pilon to pilon.fasta [pilon] Writing NODE_10652_length_300_cov_10.620112:1-300 changes to pilon.changes [pilon] Writing updated NODE_10652_length_300_cov_10.620112_pilon to pilon.fasta [pilon] Writing NODE_10653_length_300_cov_10.491620:1-300 changes to pilon.changes [pilon] Writing updated NODE_10653_length_300_cov_10.491620_pilon to pilon.fasta [pilon] Writing NODE_10654_length_300_cov_8.368715:1-300 changes to pilon.changes [pilon] Writing updated NODE_10654_length_300_cov_8.368715_pilon to pilon.fasta [pilon] Writing NODE_10655_length_300_cov_8.229050:1-300 changes to pilon.changes [pilon] Writing updated NODE_10655_length_300_cov_8.229050_pilon to pilon.fasta [pilon] Writing NODE_10656_length_300_cov_7.027933:1-300 changes to pilon.changes [pilon] Writing updated NODE_10656_length_300_cov_7.027933_pilon to pilon.fasta [pilon] Writing NODE_10657_length_300_cov_6.424581:1-300 changes to pilon.changes [pilon] Writing updated NODE_10657_length_300_cov_6.424581_pilon to pilon.fasta [pilon] Writing NODE_10658_length_300_cov_5.927374:1-300 changes to pilon.changes [pilon] Writing updated NODE_10658_length_300_cov_5.927374_pilon to pilon.fasta [pilon] Writing NODE_10659_length_300_cov_5.608939:1-300 changes to pilon.changes [pilon] Writing updated NODE_10659_length_300_cov_5.608939_pilon to pilon.fasta [pilon] Writing NODE_10660_length_300_cov_5.608939:1-300 changes to pilon.changes [pilon] Writing updated NODE_10660_length_300_cov_5.608939_pilon to pilon.fasta [pilon] Writing NODE_10661_length_300_cov_5.301676:1-300 changes to pilon.changes [pilon] Writing updated NODE_10661_length_300_cov_5.301676_pilon to pilon.fasta [pilon] Writing NODE_10662_length_300_cov_5.240223:1-300 changes to pilon.changes [pilon] Writing updated NODE_10662_length_300_cov_5.240223_pilon to pilon.fasta [pilon] Writing NODE_10663_length_299_cov_29.224719:1-299 changes to pilon.changes [pilon] Writing updated NODE_10663_length_299_cov_29.224719_pilon to pilon.fasta [pilon] Writing NODE_10664_length_299_cov_28.264045:1-299 changes to pilon.changes [pilon] Writing updated NODE_10664_length_299_cov_28.264045_pilon to pilon.fasta [pilon] Writing NODE_10665_length_299_cov_28.196629:1-299 changes to pilon.changes [pilon] Writing updated NODE_10665_length_299_cov_28.196629_pilon to pilon.fasta [pilon] Writing NODE_10666_length_299_cov_27.466292:1-299 changes to pilon.changes [pilon] Writing updated NODE_10666_length_299_cov_27.466292_pilon to pilon.fasta [pilon] Writing NODE_10667_length_299_cov_20.353933:1-299 changes to pilon.changes [pilon] Writing updated NODE_10667_length_299_cov_20.353933_pilon to pilon.fasta [pilon] Writing NODE_10668_length_299_cov_18.657303:1-299 changes to pilon.changes [pilon] Writing updated NODE_10668_length_299_cov_18.657303_pilon to pilon.fasta [pilon] Writing NODE_10669_length_299_cov_18.353933:1-299 changes to pilon.changes [pilon] Writing updated NODE_10669_length_299_cov_18.353933_pilon to pilon.fasta [pilon] Writing NODE_10670_length_299_cov_18.151685:1-299 changes to pilon.changes [pilon] Writing updated NODE_10670_length_299_cov_18.151685_pilon to pilon.fasta [pilon] Writing NODE_10671_length_299_cov_17.224719:1-299 changes to pilon.changes [pilon] Writing updated NODE_10671_length_299_cov_17.224719_pilon to pilon.fasta [pilon] Writing NODE_10672_length_299_cov_17.078652:1-299 changes to pilon.changes [pilon] Writing updated NODE_10672_length_299_cov_17.078652_pilon to pilon.fasta [pilon] Writing NODE_10673_length_299_cov_16.095506:1-299 changes to pilon.changes [pilon] Writing updated NODE_10673_length_299_cov_16.095506_pilon to pilon.fasta [pilon] Writing NODE_10674_length_299_cov_15.724719:1-299 changes to pilon.changes [pilon] Writing updated NODE_10674_length_299_cov_15.724719_pilon to pilon.fasta [pilon] Writing NODE_10675_length_299_cov_14.483146:1-299 changes to pilon.changes [pilon] Writing updated NODE_10675_length_299_cov_14.483146_pilon to pilon.fasta [pilon] Writing NODE_10676_length_299_cov_14.292135:1-299 changes to pilon.changes [pilon] Writing updated NODE_10676_length_299_cov_14.292135_pilon to pilon.fasta [pilon] Writing NODE_10677_length_299_cov_12.713483:1-299 changes to pilon.changes [pilon] Writing updated NODE_10677_length_299_cov_12.713483_pilon to pilon.fasta [pilon] Writing NODE_10678_length_299_cov_11.578652:1-299 changes to pilon.changes [pilon] Writing updated NODE_10678_length_299_cov_11.578652_pilon to pilon.fasta [pilon] Writing NODE_10679_length_299_cov_10.932584:1-299 changes to pilon.changes [pilon] Writing updated NODE_10679_length_299_cov_10.932584_pilon to pilon.fasta [pilon] Writing NODE_10680_length_299_cov_10.752809:1-299 changes to pilon.changes [pilon] Writing updated NODE_10680_length_299_cov_10.752809_pilon to pilon.fasta [pilon] Writing NODE_10681_length_299_cov_7.629213:1-299 changes to pilon.changes [pilon] Writing updated NODE_10681_length_299_cov_7.629213_pilon to pilon.fasta [pilon] Writing NODE_10682_length_299_cov_7.455056:1-299 changes to pilon.changes [pilon] Writing updated NODE_10682_length_299_cov_7.455056_pilon to pilon.fasta [pilon] Writing NODE_10683_length_299_cov_6.117978:1-299 changes to pilon.changes [pilon] Writing updated NODE_10683_length_299_cov_6.117978_pilon to pilon.fasta [pilon] Writing NODE_10684_length_299_cov_2.539326:1-299 changes to pilon.changes [pilon] Writing updated NODE_10684_length_299_cov_2.539326_pilon to pilon.fasta [pilon] Writing NODE_10685_length_298_cov_33.836158:1-298 changes to pilon.changes [pilon] Writing updated NODE_10685_length_298_cov_33.836158_pilon to pilon.fasta [pilon] Writing NODE_10686_length_298_cov_31.457627:1-298 changes to pilon.changes [pilon] Writing updated NODE_10686_length_298_cov_31.457627_pilon to pilon.fasta [pilon] Writing NODE_10687_length_298_cov_25.197740:1-298 changes to pilon.changes [pilon] Writing updated NODE_10687_length_298_cov_25.197740_pilon to pilon.fasta [pilon] Writing NODE_10688_length_298_cov_23.615819:1-298 changes to pilon.changes [pilon] Writing updated NODE_10688_length_298_cov_23.615819_pilon to pilon.fasta [pilon] Writing NODE_10689_length_298_cov_23.316384:1-298 changes to pilon.changes [pilon] Writing updated NODE_10689_length_298_cov_23.316384_pilon to pilon.fasta [pilon] Writing NODE_10690_length_298_cov_22.446328:1-298 changes to pilon.changes [pilon] Writing updated NODE_10690_length_298_cov_22.446328_pilon to pilon.fasta [pilon] Writing NODE_10691_length_298_cov_20.350282:1-298 changes to pilon.changes [pilon] Writing updated NODE_10691_length_298_cov_20.350282_pilon to pilon.fasta [pilon] Writing NODE_10692_length_298_cov_18.480226:1-298 changes to pilon.changes [pilon] Writing updated NODE_10692_length_298_cov_18.480226_pilon to pilon.fasta [pilon] Writing NODE_10693_length_298_cov_15.757062:1-298 changes to pilon.changes [pilon] Writing updated NODE_10693_length_298_cov_15.757062_pilon to pilon.fasta [pilon] Writing NODE_10694_length_298_cov_13.322034:1-298 changes to pilon.changes [pilon] Writing updated NODE_10694_length_298_cov_13.322034_pilon to pilon.fasta [pilon] Writing NODE_10695_length_298_cov_12.610169:1-298 changes to pilon.changes [pilon] Writing updated NODE_10695_length_298_cov_12.610169_pilon to pilon.fasta [pilon] Writing NODE_10696_length_297_cov_38.960227:1-297 changes to pilon.changes [pilon] Writing updated NODE_10696_length_297_cov_38.960227_pilon to pilon.fasta [pilon] Writing NODE_10697_length_297_cov_32.369318:1-297 changes to pilon.changes [pilon] Writing updated NODE_10697_length_297_cov_32.369318_pilon to pilon.fasta [pilon] Writing NODE_10698_length_297_cov_31.954545:1-297 changes to pilon.changes [pilon] Writing updated NODE_10698_length_297_cov_31.954545_pilon to pilon.fasta [pilon] Writing NODE_10699_length_297_cov_29.585227:1-297 changes to pilon.changes [pilon] Writing updated NODE_10699_length_297_cov_29.585227_pilon to pilon.fasta [pilon] Writing NODE_10700_length_297_cov_28.426136:1-297 changes to pilon.changes [pilon] Writing updated NODE_10700_length_297_cov_28.426136_pilon to pilon.fasta [pilon] Writing NODE_10701_length_297_cov_28.357955:1-297 changes to pilon.changes [pilon] Writing updated NODE_10701_length_297_cov_28.357955_pilon to pilon.fasta [pilon] Writing NODE_10702_length_297_cov_26.738636:1-297 changes to pilon.changes [pilon] Writing updated NODE_10702_length_297_cov_26.738636_pilon to pilon.fasta [pilon] Writing NODE_10703_length_297_cov_26.210227:1-297 changes to pilon.changes [pilon] Writing updated NODE_10703_length_297_cov_26.210227_pilon to pilon.fasta [pilon] Writing NODE_10704_length_297_cov_24.522727:1-297 changes to pilon.changes [pilon] Writing updated NODE_10704_length_297_cov_24.522727_pilon to pilon.fasta [pilon] Writing NODE_10705_length_297_cov_24.329545:1-297 changes to pilon.changes [pilon] Writing updated NODE_10705_length_297_cov_24.329545_pilon to pilon.fasta [pilon] Writing NODE_10706_length_297_cov_23.903409:1-297 changes to pilon.changes [pilon] Writing updated NODE_10706_length_297_cov_23.903409_pilon to pilon.fasta [pilon] Writing NODE_10707_length_297_cov_22.142045:1-297 changes to pilon.changes [pilon] Writing updated NODE_10707_length_297_cov_22.142045_pilon to pilon.fasta [pilon] Writing NODE_10708_length_297_cov_21.977273:1-297 changes to pilon.changes [pilon] Writing updated NODE_10708_length_297_cov_21.977273_pilon to pilon.fasta [pilon] Writing NODE_10709_length_297_cov_21.198864:1-297 changes to pilon.changes [pilon] Writing updated NODE_10709_length_297_cov_21.198864_pilon to pilon.fasta [pilon] Writing NODE_10710_length_297_cov_20.625000:1-297 changes to pilon.changes [pilon] Writing updated NODE_10710_length_297_cov_20.625000_pilon to pilon.fasta [pilon] Writing NODE_10711_length_297_cov_19.767045:1-297 changes to pilon.changes [pilon] Writing updated NODE_10711_length_297_cov_19.767045_pilon to pilon.fasta [pilon] Writing NODE_10712_length_297_cov_17.642045:1-297 changes to pilon.changes [pilon] Writing updated NODE_10712_length_297_cov_17.642045_pilon to pilon.fasta [pilon] Writing NODE_10713_length_297_cov_17.147727:1-297 changes to pilon.changes [pilon] Writing updated NODE_10713_length_297_cov_17.147727_pilon to pilon.fasta [pilon] Writing NODE_10714_length_297_cov_15.857955:1-297 changes to pilon.changes [pilon] Writing updated NODE_10714_length_297_cov_15.857955_pilon to pilon.fasta [pilon] Writing NODE_10715_length_297_cov_15.653409:1-297 changes to pilon.changes [pilon] Writing updated NODE_10715_length_297_cov_15.653409_pilon to pilon.fasta [pilon] Writing NODE_10716_length_297_cov_15.318182:1-297 changes to pilon.changes [pilon] Writing updated NODE_10716_length_297_cov_15.318182_pilon to pilon.fasta [pilon] Writing NODE_10717_length_297_cov_15.159091:1-297 changes to pilon.changes [pilon] Writing updated NODE_10717_length_297_cov_15.159091_pilon to pilon.fasta [pilon] Writing NODE_10718_length_297_cov_14.482955:1-297 changes to pilon.changes [pilon] Writing updated NODE_10718_length_297_cov_14.482955_pilon to pilon.fasta [pilon] Writing NODE_10719_length_297_cov_13.988636:1-297 changes to pilon.changes [pilon] Writing updated NODE_10719_length_297_cov_13.988636_pilon to pilon.fasta [pilon] Writing NODE_10720_length_297_cov_13.562500:1-297 changes to pilon.changes [pilon] Writing updated NODE_10720_length_297_cov_13.562500_pilon to pilon.fasta [pilon] Writing NODE_10721_length_297_cov_13.090909:1-297 changes to pilon.changes [pilon] Writing updated NODE_10721_length_297_cov_13.090909_pilon to pilon.fasta [pilon] Writing NODE_10722_length_297_cov_11.755682:1-297 changes to pilon.changes [pilon] Writing updated NODE_10722_length_297_cov_11.755682_pilon to pilon.fasta [pilon] Writing NODE_10723_length_297_cov_11.403409:1-297 changes to pilon.changes [pilon] Writing updated NODE_10723_length_297_cov_11.403409_pilon to pilon.fasta [pilon] Writing NODE_10724_length_297_cov_11.329545:1-297 changes to pilon.changes [pilon] Writing updated NODE_10724_length_297_cov_11.329545_pilon to pilon.fasta [pilon] Writing NODE_10725_length_297_cov_11.215909:1-297 changes to pilon.changes [pilon] Writing updated NODE_10725_length_297_cov_11.215909_pilon to pilon.fasta [pilon] Writing NODE_10726_length_297_cov_10.977273:1-297 changes to pilon.changes [pilon] Writing updated NODE_10726_length_297_cov_10.977273_pilon to pilon.fasta [pilon] Writing NODE_10727_length_297_cov_9.948864:1-297 changes to pilon.changes [pilon] Writing updated NODE_10727_length_297_cov_9.948864_pilon to pilon.fasta [pilon] Writing NODE_10728_length_297_cov_9.926136:1-297 changes to pilon.changes [pilon] Writing updated NODE_10728_length_297_cov_9.926136_pilon to pilon.fasta [pilon] Writing NODE_10729_length_297_cov_9.676136:1-297 changes to pilon.changes [pilon] Writing updated NODE_10729_length_297_cov_9.676136_pilon to pilon.fasta [pilon] Writing NODE_10730_length_297_cov_9.045455:1-297 changes to pilon.changes [pilon] Writing updated NODE_10730_length_297_cov_9.045455_pilon to pilon.fasta [pilon] Writing NODE_10731_length_297_cov_7.698864:1-297 changes to pilon.changes [pilon] Writing updated NODE_10731_length_297_cov_7.698864_pilon to pilon.fasta [pilon] Writing NODE_10732_length_297_cov_7.431818:1-297 changes to pilon.changes [pilon] Writing updated NODE_10732_length_297_cov_7.431818_pilon to pilon.fasta [pilon] Writing NODE_10733_length_297_cov_7.352273:1-297 changes to pilon.changes [pilon] Writing updated NODE_10733_length_297_cov_7.352273_pilon to pilon.fasta [pilon] Writing NODE_10734_length_297_cov_5.664773:1-297 changes to pilon.changes [pilon] Writing updated NODE_10734_length_297_cov_5.664773_pilon to pilon.fasta [pilon] Writing NODE_10735_length_297_cov_5.517045:1-297 changes to pilon.changes [pilon] Writing updated NODE_10735_length_297_cov_5.517045_pilon to pilon.fasta [pilon] Writing NODE_10736_length_296_cov_43.937143:1-296 changes to pilon.changes [pilon] Writing updated NODE_10736_length_296_cov_43.937143_pilon to pilon.fasta [pilon] Writing NODE_10737_length_296_cov_36.251429:1-296 changes to pilon.changes [pilon] Writing updated NODE_10737_length_296_cov_36.251429_pilon to pilon.fasta [pilon] Writing NODE_10738_length_296_cov_33.182857:1-296 changes to pilon.changes [pilon] Writing updated NODE_10738_length_296_cov_33.182857_pilon to pilon.fasta [pilon] Writing NODE_10739_length_296_cov_32.468571:1-296 changes to pilon.changes [pilon] Writing updated NODE_10739_length_296_cov_32.468571_pilon to pilon.fasta [pilon] Writing NODE_10740_length_296_cov_31.114286:1-296 changes to pilon.changes [pilon] Writing updated NODE_10740_length_296_cov_31.114286_pilon to pilon.fasta [pilon] Writing NODE_10741_length_296_cov_21.645714:1-296 changes to pilon.changes [pilon] Writing updated NODE_10741_length_296_cov_21.645714_pilon to pilon.fasta [pilon] Writing NODE_10742_length_296_cov_15.211429:1-296 changes to pilon.changes [pilon] Writing updated NODE_10742_length_296_cov_15.211429_pilon to pilon.fasta [pilon] Writing NODE_10743_length_296_cov_14.531429:1-296 changes to pilon.changes [pilon] Writing updated NODE_10743_length_296_cov_14.531429_pilon to pilon.fasta [pilon] Writing NODE_10744_length_296_cov_12.902857:1-296 changes to pilon.changes [pilon] Writing updated NODE_10744_length_296_cov_12.902857_pilon to pilon.fasta [pilon] Writing NODE_10745_length_296_cov_9.811429:1-296 changes to pilon.changes [pilon] Writing updated NODE_10745_length_296_cov_9.811429_pilon to pilon.fasta [pilon] Writing NODE_10746_length_296_cov_9.285714:1-296 changes to pilon.changes [pilon] Writing updated NODE_10746_length_296_cov_9.285714_pilon to pilon.fasta [pilon] Writing NODE_10747_length_296_cov_7.051429:1-296 changes to pilon.changes [pilon] Writing updated NODE_10747_length_296_cov_7.051429_pilon to pilon.fasta [pilon] Writing NODE_10748_length_295_cov_29.247126:1-295 changes to pilon.changes [pilon] Writing updated NODE_10748_length_295_cov_29.247126_pilon to pilon.fasta [pilon] Writing NODE_10749_length_295_cov_22.741379:1-295 changes to pilon.changes [pilon] Writing updated NODE_10749_length_295_cov_22.741379_pilon to pilon.fasta [pilon] Writing NODE_10750_length_295_cov_22.327586:1-295 changes to pilon.changes [pilon] Writing updated NODE_10750_length_295_cov_22.327586_pilon to pilon.fasta [pilon] Writing NODE_10751_length_295_cov_21.080460:1-295 changes to pilon.changes [pilon] Writing updated NODE_10751_length_295_cov_21.080460_pilon to pilon.fasta [pilon] Writing NODE_10752_length_295_cov_19.683908:1-295 changes to pilon.changes [pilon] Writing updated NODE_10752_length_295_cov_19.683908_pilon to pilon.fasta [pilon] Writing NODE_10753_length_295_cov_16.971264:1-295 changes to pilon.changes [pilon] Writing updated NODE_10753_length_295_cov_16.971264_pilon to pilon.fasta [pilon] Writing NODE_10754_length_295_cov_14.431034:1-295 changes to pilon.changes [pilon] Writing updated NODE_10754_length_295_cov_14.431034_pilon to pilon.fasta [pilon] Writing NODE_10755_length_295_cov_14.396552:1-295 changes to pilon.changes [pilon] Writing updated NODE_10755_length_295_cov_14.396552_pilon to pilon.fasta [pilon] Writing NODE_10756_length_295_cov_11.718391:1-295 changes to pilon.changes [pilon] Writing updated NODE_10756_length_295_cov_11.718391_pilon to pilon.fasta [pilon] Writing NODE_10757_length_295_cov_10.706897:1-295 changes to pilon.changes [pilon] Writing updated NODE_10757_length_295_cov_10.706897_pilon to pilon.fasta [pilon] Writing NODE_10758_length_295_cov_10.586207:1-295 changes to pilon.changes [pilon] Writing updated NODE_10758_length_295_cov_10.586207_pilon to pilon.fasta [pilon] Writing NODE_10759_length_295_cov_10.293103:1-295 changes to pilon.changes [pilon] Writing updated NODE_10759_length_295_cov_10.293103_pilon to pilon.fasta [pilon] Writing NODE_10760_length_295_cov_9.040230:1-295 changes to pilon.changes [pilon] Writing updated NODE_10760_length_295_cov_9.040230_pilon to pilon.fasta [pilon] Writing NODE_10761_length_295_cov_8.873563:1-295 changes to pilon.changes [pilon] Writing updated NODE_10761_length_295_cov_8.873563_pilon to pilon.fasta [pilon] Writing NODE_10762_length_294_cov_146.063584:1-294 changes to pilon.changes [pilon] Writing updated NODE_10762_length_294_cov_146.063584_pilon to pilon.fasta [pilon] Writing NODE_10763_length_294_cov_40.549133:1-294 changes to pilon.changes [pilon] Writing updated NODE_10763_length_294_cov_40.549133_pilon to pilon.fasta [pilon] Writing NODE_10764_length_294_cov_38.797688:1-294 changes to pilon.changes [pilon] Writing updated NODE_10764_length_294_cov_38.797688_pilon to pilon.fasta [pilon] Writing NODE_10765_length_294_cov_34.213873:1-294 changes to pilon.changes [pilon] Writing updated NODE_10765_length_294_cov_34.213873_pilon to pilon.fasta [pilon] Writing NODE_10766_length_294_cov_33.554913:1-294 changes to pilon.changes [pilon] Writing updated NODE_10766_length_294_cov_33.554913_pilon to pilon.fasta [pilon] Writing NODE_10767_length_294_cov_33.497110:1-294 changes to pilon.changes [pilon] Writing updated NODE_10767_length_294_cov_33.497110_pilon to pilon.fasta [pilon] Writing NODE_10768_length_294_cov_33.445087:1-294 changes to pilon.changes [pilon] Writing updated NODE_10768_length_294_cov_33.445087_pilon to pilon.fasta [pilon] Writing NODE_10769_length_294_cov_24.843931:1-294 changes to pilon.changes [pilon] Writing updated NODE_10769_length_294_cov_24.843931_pilon to pilon.fasta [pilon] Writing NODE_10770_length_294_cov_21.878613:1-294 changes to pilon.changes [pilon] Writing updated NODE_10770_length_294_cov_21.878613_pilon to pilon.fasta [pilon] Writing NODE_10771_length_294_cov_21.508671:1-294 changes to pilon.changes [pilon] Writing updated NODE_10771_length_294_cov_21.508671_pilon to pilon.fasta [pilon] Writing NODE_10772_length_294_cov_20.630058:1-294 changes to pilon.changes [pilon] Writing updated NODE_10772_length_294_cov_20.630058_pilon to pilon.fasta [pilon] Writing NODE_10773_length_294_cov_20.473988:1-294 changes to pilon.changes [pilon] Writing updated NODE_10773_length_294_cov_20.473988_pilon to pilon.fasta [pilon] Writing NODE_10774_length_294_cov_19.716763:1-294 changes to pilon.changes [pilon] Writing updated NODE_10774_length_294_cov_19.716763_pilon to pilon.fasta [pilon] Writing NODE_10775_length_294_cov_19.497110:1-294 changes to pilon.changes [pilon] Writing updated NODE_10775_length_294_cov_19.497110_pilon to pilon.fasta [pilon] Writing NODE_10776_length_294_cov_18.468208:1-294 changes to pilon.changes [pilon] Writing updated NODE_10776_length_294_cov_18.468208_pilon to pilon.fasta [pilon] Writing NODE_10777_length_294_cov_17.520231:1-294 changes to pilon.changes [pilon] Writing updated NODE_10777_length_294_cov_17.520231_pilon to pilon.fasta [pilon] Writing NODE_10778_length_294_cov_17.312139:1-294 changes to pilon.changes [pilon] Writing updated NODE_10778_length_294_cov_17.312139_pilon to pilon.fasta [pilon] Writing NODE_10779_length_294_cov_17.260116:1-294 changes to pilon.changes [pilon] Writing updated NODE_10779_length_294_cov_17.260116_pilon to pilon.fasta [pilon] Writing NODE_10780_length_294_cov_16.919075:1-294 changes to pilon.changes [pilon] Writing updated NODE_10780_length_294_cov_16.919075_pilon to pilon.fasta [pilon] Writing NODE_10781_length_294_cov_16.734104:1-294 changes to pilon.changes [pilon] Writing updated NODE_10781_length_294_cov_16.734104_pilon to pilon.fasta [pilon] Writing NODE_10782_length_294_cov_16.647399:1-294 changes to pilon.changes [pilon] Writing updated NODE_10782_length_294_cov_16.647399_pilon to pilon.fasta [pilon] Writing NODE_10783_length_294_cov_16.439306:1-294 changes to pilon.changes [pilon] Writing updated NODE_10783_length_294_cov_16.439306_pilon to pilon.fasta [pilon] Writing NODE_10784_length_294_cov_15.208092:1-294 changes to pilon.changes [pilon] Writing updated NODE_10784_length_294_cov_15.208092_pilon to pilon.fasta [pilon] Writing NODE_10785_length_294_cov_13.734104:1-294 changes to pilon.changes [pilon] Writing updated NODE_10785_length_294_cov_13.734104_pilon to pilon.fasta [pilon] Writing NODE_10786_length_294_cov_13.612717:1-294 changes to pilon.changes [pilon] Writing updated NODE_10786_length_294_cov_13.612717_pilon to pilon.fasta [pilon] Writing NODE_10787_length_294_cov_13.566474:1-294 changes to pilon.changes [pilon] Writing updated NODE_10787_length_294_cov_13.566474_pilon to pilon.fasta [pilon] Writing NODE_10788_length_294_cov_12.959538:1-294 changes to pilon.changes [pilon] Writing updated NODE_10788_length_294_cov_12.959538_pilon to pilon.fasta [pilon] Writing NODE_10789_length_294_cov_11.537572:1-294 changes to pilon.changes [pilon] Writing updated NODE_10789_length_294_cov_11.537572_pilon to pilon.fasta [pilon] Writing NODE_10790_length_294_cov_11.092486:1-294 changes to pilon.changes [pilon] Writing updated NODE_10790_length_294_cov_11.092486_pilon to pilon.fasta [pilon] Writing NODE_10791_length_294_cov_8.774566:1-294 changes to pilon.changes [pilon] Writing updated NODE_10791_length_294_cov_8.774566_pilon to pilon.fasta [pilon] Writing NODE_10792_length_294_cov_8.560694:1-294 changes to pilon.changes [pilon] Writing updated NODE_10792_length_294_cov_8.560694_pilon to pilon.fasta [pilon] Writing NODE_10793_length_294_cov_7.109827:1-294 changes to pilon.changes [pilon] Writing updated NODE_10793_length_294_cov_7.109827_pilon to pilon.fasta [pilon] Writing NODE_10794_length_294_cov_7.069364:1-294 changes to pilon.changes [pilon] Writing updated NODE_10794_length_294_cov_7.069364_pilon to pilon.fasta [pilon] Writing NODE_10795_length_294_cov_6.919075:1-294 changes to pilon.changes [pilon] Writing updated NODE_10795_length_294_cov_6.919075_pilon to pilon.fasta [pilon] Writing NODE_10796_length_294_cov_6.630058:1-294 changes to pilon.changes [pilon] Writing updated NODE_10796_length_294_cov_6.630058_pilon to pilon.fasta [pilon] Writing NODE_10797_length_294_cov_6.595376:1-294 changes to pilon.changes [pilon] Writing updated NODE_10797_length_294_cov_6.595376_pilon to pilon.fasta [pilon] Writing NODE_10798_length_294_cov_5.965318:1-294 changes to pilon.changes [pilon] Writing updated NODE_10798_length_294_cov_5.965318_pilon to pilon.fasta [pilon] Writing NODE_10799_length_294_cov_5.682081:1-294 changes to pilon.changes [pilon] Writing updated NODE_10799_length_294_cov_5.682081_pilon to pilon.fasta [pilon] Writing NODE_10800_length_294_cov_1.797688:1-294 changes to pilon.changes [pilon] Writing updated NODE_10800_length_294_cov_1.797688_pilon to pilon.fasta [pilon] Writing NODE_10801_length_293_cov_24.720930:1-293 changes to pilon.changes [pilon] Writing updated NODE_10801_length_293_cov_24.720930_pilon to pilon.fasta [pilon] Writing NODE_10802_length_293_cov_23.587209:1-293 changes to pilon.changes [pilon] Writing updated NODE_10802_length_293_cov_23.587209_pilon to pilon.fasta [pilon] Writing NODE_10803_length_293_cov_12.843023:1-293 changes to pilon.changes [pilon] Writing updated NODE_10803_length_293_cov_12.843023_pilon to pilon.fasta [pilon] Writing NODE_10804_length_293_cov_10.191860:1-293 changes to pilon.changes [pilon] Writing updated NODE_10804_length_293_cov_10.191860_pilon to pilon.fasta [pilon] Writing NODE_10805_length_293_cov_9.877907:1-293 changes to pilon.changes [pilon] Writing updated NODE_10805_length_293_cov_9.877907_pilon to pilon.fasta [pilon] Writing NODE_10806_length_293_cov_9.238372:1-293 changes to pilon.changes [pilon] Writing updated NODE_10806_length_293_cov_9.238372_pilon to pilon.fasta [pilon] Writing NODE_10807_length_292_cov_45.906433:1-292 changes to pilon.changes [pilon] Writing updated NODE_10807_length_292_cov_45.906433_pilon to pilon.fasta [pilon] Writing NODE_10808_length_292_cov_23.175439:1-292 changes to pilon.changes [pilon] Writing updated NODE_10808_length_292_cov_23.175439_pilon to pilon.fasta [pilon] Writing NODE_10809_length_292_cov_20.228070:1-292 changes to pilon.changes [pilon] Writing updated NODE_10809_length_292_cov_20.228070_pilon to pilon.fasta [pilon] Writing NODE_10810_length_292_cov_15.824561:1-292 changes to pilon.changes [pilon] Writing updated NODE_10810_length_292_cov_15.824561_pilon to pilon.fasta [pilon] Writing NODE_10811_length_292_cov_14.368421:1-292 changes to pilon.changes [pilon] Writing updated NODE_10811_length_292_cov_14.368421_pilon to pilon.fasta [pilon] Writing NODE_10812_length_292_cov_12.374269:1-292 changes to pilon.changes [pilon] Writing updated NODE_10812_length_292_cov_12.374269_pilon to pilon.fasta [pilon] Writing NODE_10813_length_292_cov_8.286550:1-292 changes to pilon.changes [pilon] Writing updated NODE_10813_length_292_cov_8.286550_pilon to pilon.fasta [pilon] Writing NODE_10814_length_292_cov_7.789474:1-292 changes to pilon.changes [pilon] Writing updated NODE_10814_length_292_cov_7.789474_pilon to pilon.fasta [pilon] Writing NODE_10815_length_291_cov_34.252941:1-291 changes to pilon.changes [pilon] Writing updated NODE_10815_length_291_cov_34.252941_pilon to pilon.fasta [pilon] Writing NODE_10816_length_291_cov_33.747059:1-291 changes to pilon.changes [pilon] Writing updated NODE_10816_length_291_cov_33.747059_pilon to pilon.fasta [pilon] Writing NODE_10817_length_291_cov_32.664706:1-291 changes to pilon.changes [pilon] Writing updated NODE_10817_length_291_cov_32.664706_pilon to pilon.fasta [pilon] Writing NODE_10818_length_291_cov_32.170588:1-291 changes to pilon.changes [pilon] Writing updated NODE_10818_length_291_cov_32.170588_pilon to pilon.fasta [pilon] Writing NODE_10819_length_291_cov_32.011765:1-291 changes to pilon.changes [pilon] Writing updated NODE_10819_length_291_cov_32.011765_pilon to pilon.fasta [pilon] Writing NODE_10820_length_291_cov_31.923529:1-291 changes to pilon.changes [pilon] Writing updated NODE_10820_length_291_cov_31.923529_pilon to pilon.fasta [pilon] Writing NODE_10821_length_291_cov_29.329412:1-291 changes to pilon.changes [pilon] Writing updated NODE_10821_length_291_cov_29.329412_pilon to pilon.fasta [pilon] Writing NODE_10822_length_291_cov_27.229412:1-291 changes to pilon.changes [pilon] Writing updated NODE_10822_length_291_cov_27.229412_pilon to pilon.fasta [pilon] Writing NODE_10823_length_291_cov_25.905882:1-291 changes to pilon.changes [pilon] Writing updated NODE_10823_length_291_cov_25.905882_pilon to pilon.fasta [pilon] Writing NODE_10824_length_291_cov_25.541176:1-291 changes to pilon.changes [pilon] Writing updated NODE_10824_length_291_cov_25.541176_pilon to pilon.fasta [pilon] Writing NODE_10825_length_291_cov_24.558824:1-291 changes to pilon.changes [pilon] Writing updated NODE_10825_length_291_cov_24.558824_pilon to pilon.fasta [pilon] Writing NODE_10826_length_291_cov_23.017647:1-291 changes to pilon.changes [pilon] Writing updated NODE_10826_length_291_cov_23.017647_pilon to pilon.fasta [pilon] Writing NODE_10827_length_291_cov_22.164706:1-291 changes to pilon.changes [pilon] Writing updated NODE_10827_length_291_cov_22.164706_pilon to pilon.fasta [pilon] Writing NODE_10828_length_291_cov_21.964706:1-291 changes to pilon.changes [pilon] Writing updated NODE_10828_length_291_cov_21.964706_pilon to pilon.fasta [pilon] Writing NODE_10829_length_291_cov_20.323529:1-291 changes to pilon.changes [pilon] Writing updated NODE_10829_length_291_cov_20.323529_pilon to pilon.fasta [pilon] Writing NODE_10830_length_291_cov_19.429412:1-291 changes to pilon.changes [pilon] Writing updated NODE_10830_length_291_cov_19.429412_pilon to pilon.fasta [pilon] Writing NODE_10831_length_291_cov_18.594118:1-291 changes to pilon.changes [pilon] Writing updated NODE_10831_length_291_cov_18.594118_pilon to pilon.fasta [pilon] Writing NODE_10832_length_291_cov_18.305882:1-291 changes to pilon.changes [pilon] Writing updated NODE_10832_length_291_cov_18.305882_pilon to pilon.fasta [pilon] Writing NODE_10833_length_291_cov_14.494118:1-291 changes to pilon.changes [pilon] Writing updated NODE_10833_length_291_cov_14.494118_pilon to pilon.fasta [pilon] Writing NODE_10834_length_291_cov_13.758824:1-291 changes to pilon.changes [pilon] Writing updated NODE_10834_length_291_cov_13.758824_pilon to pilon.fasta [pilon] Writing NODE_10835_length_291_cov_13.470588:1-291 changes to pilon.changes [pilon] Writing updated NODE_10835_length_291_cov_13.470588_pilon to pilon.fasta [pilon] Writing NODE_10836_length_291_cov_12.176471:1-291 changes to pilon.changes [pilon] Writing updated NODE_10836_length_291_cov_12.176471_pilon to pilon.fasta [pilon] Writing NODE_10837_length_291_cov_11.005882:1-291 changes to pilon.changes [pilon] Writing updated NODE_10837_length_291_cov_11.005882_pilon to pilon.fasta [pilon] Writing NODE_10838_length_291_cov_10.841176:1-291 changes to pilon.changes [pilon] Writing updated NODE_10838_length_291_cov_10.841176_pilon to pilon.fasta [pilon] Writing NODE_10839_length_291_cov_10.588235:1-291 changes to pilon.changes [pilon] Writing updated NODE_10839_length_291_cov_10.588235_pilon to pilon.fasta [pilon] Writing NODE_10840_length_291_cov_10.052941:1-291 changes to pilon.changes [pilon] Writing updated NODE_10840_length_291_cov_10.052941_pilon to pilon.fasta [pilon] Writing NODE_10841_length_291_cov_9.435294:1-291 changes to pilon.changes [pilon] Writing updated NODE_10841_length_291_cov_9.435294_pilon to pilon.fasta [pilon] Writing NODE_10842_length_291_cov_9.252941:1-291 changes to pilon.changes [pilon] Writing updated NODE_10842_length_291_cov_9.252941_pilon to pilon.fasta [pilon] Writing NODE_10843_length_291_cov_7.705882:1-291 changes to pilon.changes [pilon] Writing updated NODE_10843_length_291_cov_7.705882_pilon to pilon.fasta [pilon] Writing NODE_10844_length_291_cov_6.447059:1-291 changes to pilon.changes [pilon] Writing updated NODE_10844_length_291_cov_6.447059_pilon to pilon.fasta [pilon] Writing NODE_10845_length_291_cov_6.000000:1-291 changes to pilon.changes [pilon] Writing updated NODE_10845_length_291_cov_6.000000_pilon to pilon.fasta [pilon] Writing NODE_10846_length_290_cov_64.568047:1-290 changes to pilon.changes [pilon] Writing updated NODE_10846_length_290_cov_64.568047_pilon to pilon.fasta [pilon] Writing NODE_10847_length_290_cov_44.603550:1-290 changes to pilon.changes [pilon] Writing updated NODE_10847_length_290_cov_44.603550_pilon to pilon.fasta [pilon] Writing NODE_10848_length_290_cov_31.313609:1-290 changes to pilon.changes [pilon] Writing updated NODE_10848_length_290_cov_31.313609_pilon to pilon.fasta [pilon] Writing NODE_10849_length_290_cov_30.952663:1-290 changes to pilon.changes [pilon] Writing updated NODE_10849_length_290_cov_30.952663_pilon to pilon.fasta [pilon] Writing NODE_10850_length_290_cov_29.023669:1-290 changes to pilon.changes [pilon] Writing updated NODE_10850_length_290_cov_29.023669_pilon to pilon.fasta [pilon] Writing NODE_10851_length_290_cov_28.082840:1-290 changes to pilon.changes [pilon] Writing updated NODE_10851_length_290_cov_28.082840_pilon to pilon.fasta [pilon] Writing NODE_10852_length_290_cov_25.396450:1-290 changes to pilon.changes [pilon] Writing updated NODE_10852_length_290_cov_25.396450_pilon to pilon.fasta [pilon] Writing NODE_10853_length_290_cov_21.911243:1-290 changes to pilon.changes [pilon] Writing updated NODE_10853_length_290_cov_21.911243_pilon to pilon.fasta [pilon] Writing NODE_10854_length_290_cov_20.970414:1-290 changes to pilon.changes [pilon] Writing updated NODE_10854_length_290_cov_20.970414_pilon to pilon.fasta [pilon] Writing NODE_10855_length_290_cov_18.757396:1-290 changes to pilon.changes [pilon] Writing updated NODE_10855_length_290_cov_18.757396_pilon to pilon.fasta [pilon] Writing NODE_10856_length_290_cov_16.112426:1-290 changes to pilon.changes [pilon] Writing updated NODE_10856_length_290_cov_16.112426_pilon to pilon.fasta [pilon] Writing NODE_10857_length_290_cov_15.349112:1-290 changes to pilon.changes [pilon] Writing updated NODE_10857_length_290_cov_15.349112_pilon to pilon.fasta [pilon] Writing NODE_10858_length_290_cov_12.218935:1-290 changes to pilon.changes [pilon] Writing updated NODE_10858_length_290_cov_12.218935_pilon to pilon.fasta [pilon] Writing NODE_10859_length_290_cov_10.443787:1-290 changes to pilon.changes [pilon] Writing updated NODE_10859_length_290_cov_10.443787_pilon to pilon.fasta [pilon] Writing NODE_10860_length_290_cov_9.698225:1-290 changes to pilon.changes [pilon] Writing updated NODE_10860_length_290_cov_9.698225_pilon to pilon.fasta [pilon] Writing NODE_10861_length_290_cov_8.923077:1-290 changes to pilon.changes [pilon] Writing updated NODE_10861_length_290_cov_8.923077_pilon to pilon.fasta [pilon] Writing NODE_10862_length_290_cov_8.869822:1-290 changes to pilon.changes [pilon] Writing updated NODE_10862_length_290_cov_8.869822_pilon to pilon.fasta [pilon] Writing NODE_10863_length_290_cov_3.130178:1-290 changes to pilon.changes [pilon] Writing updated NODE_10863_length_290_cov_3.130178_pilon to pilon.fasta [pilon] Writing NODE_10864_length_289_cov_32.880952:1-289 changes to pilon.changes [pilon] Writing updated NODE_10864_length_289_cov_32.880952_pilon to pilon.fasta [pilon] Writing NODE_10865_length_289_cov_28.261905:1-289 changes to pilon.changes [pilon] Writing updated NODE_10865_length_289_cov_28.261905_pilon to pilon.fasta [pilon] Writing NODE_10866_length_289_cov_25.767857:1-289 changes to pilon.changes [pilon] Writing updated NODE_10866_length_289_cov_25.767857_pilon to pilon.fasta [pilon] Writing NODE_10867_length_289_cov_16.625000:1-289 changes to pilon.changes [pilon] Writing updated NODE_10867_length_289_cov_16.625000_pilon to pilon.fasta [pilon] Writing NODE_10868_length_289_cov_15.095238:1-289 changes to pilon.changes [pilon] Writing updated NODE_10868_length_289_cov_15.095238_pilon to pilon.fasta [pilon] Writing NODE_10869_length_289_cov_13.238095:1-289 changes to pilon.changes [pilon] Writing updated NODE_10869_length_289_cov_13.238095_pilon to pilon.fasta [pilon] Writing NODE_10870_length_289_cov_13.119048:1-289 changes to pilon.changes [pilon] Writing updated NODE_10870_length_289_cov_13.119048_pilon to pilon.fasta [pilon] Writing NODE_10871_length_289_cov_12.845238:1-289 changes to pilon.changes [pilon] Writing updated NODE_10871_length_289_cov_12.845238_pilon to pilon.fasta [pilon] Writing NODE_10872_length_289_cov_12.732143:1-289 changes to pilon.changes [pilon] Writing updated NODE_10872_length_289_cov_12.732143_pilon to pilon.fasta [pilon] Writing NODE_10873_length_289_cov_12.065476:1-289 changes to pilon.changes [pilon] Writing updated NODE_10873_length_289_cov_12.065476_pilon to pilon.fasta [pilon] Writing NODE_10874_length_289_cov_11.964286:1-289 changes to pilon.changes [pilon] Writing updated NODE_10874_length_289_cov_11.964286_pilon to pilon.fasta [pilon] Writing NODE_10875_length_289_cov_11.434524:1-289 changes to pilon.changes [pilon] Writing updated NODE_10875_length_289_cov_11.434524_pilon to pilon.fasta [pilon] Writing NODE_10876_length_289_cov_8.922619:1-289 changes to pilon.changes [pilon] Writing updated NODE_10876_length_289_cov_8.922619_pilon to pilon.fasta [pilon] Writing NODE_10877_length_289_cov_8.869048:1-289 changes to pilon.changes [pilon] Writing updated NODE_10877_length_289_cov_8.869048_pilon to pilon.fasta [pilon] Writing NODE_10878_length_289_cov_8.589286:1-289 changes to pilon.changes [pilon] Writing updated NODE_10878_length_289_cov_8.589286_pilon to pilon.fasta [pilon] Writing NODE_10879_length_289_cov_7.791667:1-289 changes to pilon.changes [pilon] Writing updated NODE_10879_length_289_cov_7.791667_pilon to pilon.fasta [pilon] Writing NODE_10880_length_288_cov_52.449102:1-288 changes to pilon.changes [pilon] Writing updated NODE_10880_length_288_cov_52.449102_pilon to pilon.fasta [pilon] Writing NODE_10881_length_288_cov_36.413174:1-288 changes to pilon.changes [pilon] Writing updated NODE_10881_length_288_cov_36.413174_pilon to pilon.fasta [pilon] Writing NODE_10882_length_288_cov_35.568862:1-288 changes to pilon.changes [pilon] Writing updated NODE_10882_length_288_cov_35.568862_pilon to pilon.fasta [pilon] Writing NODE_10883_length_288_cov_34.628743:1-288 changes to pilon.changes [pilon] Writing updated NODE_10883_length_288_cov_34.628743_pilon to pilon.fasta [pilon] Writing NODE_10884_length_288_cov_32.269461:1-288 changes to pilon.changes [pilon] Writing updated NODE_10884_length_288_cov_32.269461_pilon to pilon.fasta [pilon] Writing NODE_10885_length_288_cov_30.724551:1-288 changes to pilon.changes [pilon] Writing updated NODE_10885_length_288_cov_30.724551_pilon to pilon.fasta [pilon] Writing NODE_10886_length_288_cov_26.497006:1-288 changes to pilon.changes [pilon] Writing updated NODE_10886_length_288_cov_26.497006_pilon to pilon.fasta [pilon] Writing NODE_10887_length_288_cov_25.137725:1-288 changes to pilon.changes [pilon] Writing updated NODE_10887_length_288_cov_25.137725_pilon to pilon.fasta [pilon] Writing NODE_10888_length_288_cov_24.622754:1-288 changes to pilon.changes [pilon] Writing updated NODE_10888_length_288_cov_24.622754_pilon to pilon.fasta [pilon] Writing NODE_10889_length_288_cov_24.383234:1-288 changes to pilon.changes [pilon] Writing updated NODE_10889_length_288_cov_24.383234_pilon to pilon.fasta [pilon] Writing NODE_10890_length_288_cov_24.287425:1-288 changes to pilon.changes [pilon] Writing updated NODE_10890_length_288_cov_24.287425_pilon to pilon.fasta [pilon] Writing NODE_10891_length_288_cov_24.209581:1-288 changes to pilon.changes [pilon] Writing updated NODE_10891_length_288_cov_24.209581_pilon to pilon.fasta [pilon] Writing NODE_10892_length_288_cov_23.964072:1-288 changes to pilon.changes [pilon] Writing updated NODE_10892_length_288_cov_23.964072_pilon to pilon.fasta [pilon] Writing NODE_10893_length_288_cov_23.838323:1-288 changes to pilon.changes [pilon] Writing updated NODE_10893_length_288_cov_23.838323_pilon to pilon.fasta [pilon] Writing NODE_10894_length_288_cov_23.443114:1-288 changes to pilon.changes [pilon] Writing updated NODE_10894_length_288_cov_23.443114_pilon to pilon.fasta [pilon] Writing NODE_10895_length_288_cov_21.748503:1-288 changes to pilon.changes [pilon] Writing updated NODE_10895_length_288_cov_21.748503_pilon to pilon.fasta [pilon] Writing NODE_10896_length_288_cov_21.586826:1-288 changes to pilon.changes [pilon] Writing updated NODE_10896_length_288_cov_21.586826_pilon to pilon.fasta [pilon] Writing NODE_10897_length_288_cov_21.425150:1-288 changes to pilon.changes [pilon] Writing updated NODE_10897_length_288_cov_21.425150_pilon to pilon.fasta [pilon] Writing NODE_10898_length_288_cov_20.604790:1-288 changes to pilon.changes [pilon] Writing updated NODE_10898_length_288_cov_20.604790_pilon to pilon.fasta [pilon] Writing NODE_10899_length_288_cov_20.239521:1-288 changes to pilon.changes [pilon] Writing updated NODE_10899_length_288_cov_20.239521_pilon to pilon.fasta [pilon] Writing NODE_10900_length_288_cov_20.161677:1-288 changes to pilon.changes [pilon] Writing updated NODE_10900_length_288_cov_20.161677_pilon to pilon.fasta [pilon] Writing NODE_10901_length_288_cov_19.646707:1-288 changes to pilon.changes [pilon] Writing updated NODE_10901_length_288_cov_19.646707_pilon to pilon.fasta [pilon] Writing NODE_10902_length_288_cov_19.646707:1-288 changes to pilon.changes [pilon] Writing updated NODE_10902_length_288_cov_19.646707_pilon to pilon.fasta [pilon] Writing NODE_10903_length_288_cov_19.323353:1-288 changes to pilon.changes [pilon] Writing updated NODE_10903_length_288_cov_19.323353_pilon to pilon.fasta [pilon] Writing NODE_10904_length_288_cov_19.167665:1-288 changes to pilon.changes [pilon] Writing updated NODE_10904_length_288_cov_19.167665_pilon to pilon.fasta [pilon] Writing NODE_10905_length_288_cov_18.227545:1-288 changes to pilon.changes [pilon] Writing updated NODE_10905_length_288_cov_18.227545_pilon to pilon.fasta [pilon] Writing NODE_10906_length_288_cov_17.736527:1-288 changes to pilon.changes [pilon] Writing updated NODE_10906_length_288_cov_17.736527_pilon to pilon.fasta [pilon] Writing NODE_10907_length_288_cov_17.179641:1-288 changes to pilon.changes [pilon] Writing updated NODE_10907_length_288_cov_17.179641_pilon to pilon.fasta [pilon] Writing NODE_10908_length_288_cov_16.868263:1-288 changes to pilon.changes [pilon] Writing updated NODE_10908_length_288_cov_16.868263_pilon to pilon.fasta [pilon] Writing NODE_10909_length_288_cov_16.568862:1-288 changes to pilon.changes [pilon] Writing updated NODE_10909_length_288_cov_16.568862_pilon to pilon.fasta [pilon] Writing NODE_10910_length_288_cov_16.401198:1-288 changes to pilon.changes [pilon] Writing updated NODE_10910_length_288_cov_16.401198_pilon to pilon.fasta [pilon] Writing NODE_10911_length_288_cov_16.275449:1-288 changes to pilon.changes [pilon] Writing updated NODE_10911_length_288_cov_16.275449_pilon to pilon.fasta [pilon] Writing NODE_10912_length_288_cov_16.035928:1-288 changes to pilon.changes [pilon] Writing updated NODE_10912_length_288_cov_16.035928_pilon to pilon.fasta [pilon] Writing NODE_10913_length_288_cov_14.778443:1-288 changes to pilon.changes [pilon] Writing updated NODE_10913_length_288_cov_14.778443_pilon to pilon.fasta [pilon] Writing NODE_10914_length_288_cov_14.592814:1-288 changes to pilon.changes [pilon] Writing updated NODE_10914_length_288_cov_14.592814_pilon to pilon.fasta [pilon] Writing NODE_10915_length_288_cov_13.964072:1-288 changes to pilon.changes [pilon] Writing updated NODE_10915_length_288_cov_13.964072_pilon to pilon.fasta [pilon] Writing NODE_10916_length_288_cov_13.736527:1-288 changes to pilon.changes [pilon] Writing updated NODE_10916_length_288_cov_13.736527_pilon to pilon.fasta [pilon] Writing NODE_10917_length_288_cov_13.724551:1-288 changes to pilon.changes [pilon] Writing updated NODE_10917_length_288_cov_13.724551_pilon to pilon.fasta [pilon] Writing NODE_10918_length_288_cov_11.179641:1-288 changes to pilon.changes [pilon] Writing updated NODE_10918_length_288_cov_11.179641_pilon to pilon.fasta [pilon] Writing NODE_10919_length_288_cov_10.580838:1-288 changes to pilon.changes [pilon] Writing updated NODE_10919_length_288_cov_10.580838_pilon to pilon.fasta [pilon] Writing NODE_10920_length_288_cov_10.371257:1-288 changes to pilon.changes [pilon] Writing updated NODE_10920_length_288_cov_10.371257_pilon to pilon.fasta [pilon] Writing NODE_10921_length_288_cov_9.616766:1-288 changes to pilon.changes [pilon] Writing updated NODE_10921_length_288_cov_9.616766_pilon to pilon.fasta [pilon] Writing NODE_10922_length_288_cov_9.407186:1-288 changes to pilon.changes [pilon] Writing updated NODE_10922_length_288_cov_9.407186_pilon to pilon.fasta [pilon] Writing NODE_10923_length_288_cov_8.886228:1-288 changes to pilon.changes [pilon] Writing updated NODE_10923_length_288_cov_8.886228_pilon to pilon.fasta [pilon] Writing NODE_10924_length_288_cov_8.652695:1-288 changes to pilon.changes [pilon] Writing updated NODE_10924_length_288_cov_8.652695_pilon to pilon.fasta [pilon] Writing NODE_10925_length_288_cov_7.473054:1-288 changes to pilon.changes [pilon] Writing updated NODE_10925_length_288_cov_7.473054_pilon to pilon.fasta [pilon] Writing NODE_10926_length_288_cov_6.371257:1-288 changes to pilon.changes [pilon] Writing updated NODE_10926_length_288_cov_6.371257_pilon to pilon.fasta [pilon] Writing NODE_10927_length_288_cov_6.257485:1-288 changes to pilon.changes [pilon] Writing updated NODE_10927_length_288_cov_6.257485_pilon to pilon.fasta [pilon] Writing NODE_10928_length_288_cov_1.544910:1-288 changes to pilon.changes [pilon] Writing updated NODE_10928_length_288_cov_1.544910_pilon to pilon.fasta [pilon] Writing NODE_10929_length_287_cov_24.006024:1-287 changes to pilon.changes [pilon] Writing updated NODE_10929_length_287_cov_24.006024_pilon to pilon.fasta [pilon] Writing NODE_10930_length_287_cov_21.066265:1-287 changes to pilon.changes [pilon] Writing updated NODE_10930_length_287_cov_21.066265_pilon to pilon.fasta [pilon] Writing NODE_10931_length_287_cov_20.596386:1-287 changes to pilon.changes [pilon] Writing updated NODE_10931_length_287_cov_20.596386_pilon to pilon.fasta [pilon] Writing NODE_10932_length_287_cov_19.072289:1-287 changes to pilon.changes [pilon] Writing updated NODE_10932_length_287_cov_19.072289_pilon to pilon.fasta [pilon] Writing NODE_10933_length_287_cov_17.831325:1-287 changes to pilon.changes [pilon] Writing updated NODE_10933_length_287_cov_17.831325_pilon to pilon.fasta [pilon] Writing NODE_10934_length_287_cov_14.415663:1-287 changes to pilon.changes [pilon] Writing updated NODE_10934_length_287_cov_14.415663_pilon to pilon.fasta [pilon] Writing NODE_10935_length_287_cov_11.560241:1-287 changes to pilon.changes [pilon] Writing updated NODE_10935_length_287_cov_11.560241_pilon to pilon.fasta [pilon] Writing NODE_10936_length_287_cov_2.885542:1-287 changes to pilon.changes [pilon] Writing updated NODE_10936_length_287_cov_2.885542_pilon to pilon.fasta [pilon] Writing NODE_10937_length_286_cov_22.606061:1-286 changes to pilon.changes [pilon] Writing updated NODE_10937_length_286_cov_22.606061_pilon to pilon.fasta [pilon] Writing NODE_10938_length_286_cov_21.042424:1-286 changes to pilon.changes [pilon] Writing updated NODE_10938_length_286_cov_21.042424_pilon to pilon.fasta [pilon] Writing NODE_10939_length_286_cov_20.824242:1-286 changes to pilon.changes [pilon] Writing updated NODE_10939_length_286_cov_20.824242_pilon to pilon.fasta [pilon] Writing NODE_10940_length_286_cov_20.727273:1-286 changes to pilon.changes [pilon] Writing updated NODE_10940_length_286_cov_20.727273_pilon to pilon.fasta [pilon] Writing NODE_10941_length_286_cov_18.515152:1-286 changes to pilon.changes [pilon] Writing updated NODE_10941_length_286_cov_18.515152_pilon to pilon.fasta [pilon] Writing NODE_10942_length_286_cov_16.872727:1-286 changes to pilon.changes [pilon] Writing updated NODE_10942_length_286_cov_16.872727_pilon to pilon.fasta [pilon] Writing NODE_10943_length_286_cov_16.115152:1-286 changes to pilon.changes [pilon] Writing updated NODE_10943_length_286_cov_16.115152_pilon to pilon.fasta [pilon] Writing NODE_10944_length_286_cov_14.412121:1-286 changes to pilon.changes [pilon] Writing updated NODE_10944_length_286_cov_14.412121_pilon to pilon.fasta [pilon] Writing NODE_10945_length_286_cov_13.351515:1-286 changes to pilon.changes [pilon] Writing updated NODE_10945_length_286_cov_13.351515_pilon to pilon.fasta [pilon] Writing NODE_10946_length_286_cov_10.048485:1-286 changes to pilon.changes [pilon] Writing updated NODE_10946_length_286_cov_10.048485_pilon to pilon.fasta [pilon] Writing NODE_10947_length_286_cov_5.951515:1-286 changes to pilon.changes [pilon] Writing updated NODE_10947_length_286_cov_5.951515_pilon to pilon.fasta [pilon] Writing NODE_10948_length_285_cov_36.798780:1-285 changes to pilon.changes [pilon] Writing updated NODE_10948_length_285_cov_36.798780_pilon to pilon.fasta [pilon] Writing NODE_10949_length_285_cov_35.603659:1-285 changes to pilon.changes [pilon] Writing updated NODE_10949_length_285_cov_35.603659_pilon to pilon.fasta [pilon] Writing NODE_10950_length_285_cov_35.225610:1-285 changes to pilon.changes [pilon] Writing updated NODE_10950_length_285_cov_35.225610_pilon to pilon.fasta [pilon] Writing NODE_10951_length_285_cov_34.969512:1-285 changes to pilon.changes [pilon] Writing updated NODE_10951_length_285_cov_34.969512_pilon to pilon.fasta [pilon] Writing NODE_10952_length_285_cov_34.810976:1-285 changes to pilon.changes [pilon] Writing updated NODE_10952_length_285_cov_34.810976_pilon to pilon.fasta [pilon] Writing NODE_10953_length_285_cov_30.676829:1-285 changes to pilon.changes [pilon] Writing updated NODE_10953_length_285_cov_30.676829_pilon to pilon.fasta [pilon] Writing NODE_10954_length_285_cov_29.420732:1-285 changes to pilon.changes [pilon] Writing updated NODE_10954_length_285_cov_29.420732_pilon to pilon.fasta [pilon] Writing NODE_10955_length_285_cov_28.865854:1-285 changes to pilon.changes [pilon] Writing updated NODE_10955_length_285_cov_28.865854_pilon to pilon.fasta [pilon] Writing NODE_10956_length_285_cov_26.914634:1-285 changes to pilon.changes [pilon] Writing updated NODE_10956_length_285_cov_26.914634_pilon to pilon.fasta [pilon] Writing NODE_10957_length_285_cov_25.121951:1-285 changes to pilon.changes [pilon] Writing updated NODE_10957_length_285_cov_25.121951_pilon to pilon.fasta [pilon] Writing NODE_10958_length_285_cov_24.347561:1-285 changes to pilon.changes [pilon] Writing updated NODE_10958_length_285_cov_24.347561_pilon to pilon.fasta [pilon] Writing NODE_10959_length_285_cov_24.298780:1-285 changes to pilon.changes [pilon] Writing updated NODE_10959_length_285_cov_24.298780_pilon to pilon.fasta [pilon] Writing NODE_10960_length_285_cov_23.932927:1-285 changes to pilon.changes [pilon] Writing updated NODE_10960_length_285_cov_23.932927_pilon to pilon.fasta [pilon] Writing NODE_10961_length_285_cov_22.115854:1-285 changes to pilon.changes [pilon] Writing updated NODE_10961_length_285_cov_22.115854_pilon to pilon.fasta [pilon] Writing NODE_10962_length_285_cov_21.073171:1-285 changes to pilon.changes [pilon] Writing updated NODE_10962_length_285_cov_21.073171_pilon to pilon.fasta [pilon] Writing NODE_10963_length_285_cov_20.871951:1-285 changes to pilon.changes [pilon] Writing updated NODE_10963_length_285_cov_20.871951_pilon to pilon.fasta [pilon] Writing NODE_10964_length_285_cov_20.573171:1-285 changes to pilon.changes [pilon] Writing updated NODE_10964_length_285_cov_20.573171_pilon to pilon.fasta [pilon] Writing NODE_10965_length_285_cov_20.219512:1-285 changes to pilon.changes [pilon] Writing updated NODE_10965_length_285_cov_20.219512_pilon to pilon.fasta [pilon] Writing NODE_10966_length_285_cov_20.219512:1-285 changes to pilon.changes [pilon] Writing updated NODE_10966_length_285_cov_20.219512_pilon to pilon.fasta [pilon] Writing NODE_10967_length_285_cov_20.128049:1-285 changes to pilon.changes [pilon] Writing updated NODE_10967_length_285_cov_20.128049_pilon to pilon.fasta [pilon] Writing NODE_10968_length_285_cov_19.676829:1-285 changes to pilon.changes [pilon] Writing updated NODE_10968_length_285_cov_19.676829_pilon to pilon.fasta [pilon] Writing NODE_10969_length_285_cov_19.432927:1-285 changes to pilon.changes [pilon] Writing updated NODE_10969_length_285_cov_19.432927_pilon to pilon.fasta [pilon] Writing NODE_10970_length_285_cov_19.085366:1-285 changes to pilon.changes [pilon] Writing updated NODE_10970_length_285_cov_19.085366_pilon to pilon.fasta [pilon] Writing NODE_10971_length_285_cov_18.932927:1-285 changes to pilon.changes [pilon] Writing updated NODE_10971_length_285_cov_18.932927_pilon to pilon.fasta [pilon] Writing NODE_10972_length_285_cov_18.817073:1-285 changes to pilon.changes [pilon] Writing updated NODE_10972_length_285_cov_18.817073_pilon to pilon.fasta [pilon] Writing NODE_10973_length_285_cov_18.658537:1-285 changes to pilon.changes [pilon] Writing updated NODE_10973_length_285_cov_18.658537_pilon to pilon.fasta [pilon] Writing NODE_10974_length_285_cov_17.774390:1-285 changes to pilon.changes [pilon] Writing updated NODE_10974_length_285_cov_17.774390_pilon to pilon.fasta [pilon] Writing NODE_10975_length_285_cov_17.384146:1-285 changes to pilon.changes [pilon] Writing updated NODE_10975_length_285_cov_17.384146_pilon to pilon.fasta [pilon] Writing NODE_10976_length_285_cov_16.506098:1-285 changes to pilon.changes [pilon] Writing updated NODE_10976_length_285_cov_16.506098_pilon to pilon.fasta [pilon] Writing NODE_10977_length_285_cov_16.365854:1-285 changes to pilon.changes [pilon] Writing updated NODE_10977_length_285_cov_16.365854_pilon to pilon.fasta [pilon] Writing NODE_10978_length_285_cov_15.932927:1-285 changes to pilon.changes [pilon] Writing updated NODE_10978_length_285_cov_15.932927_pilon to pilon.fasta [pilon] Writing NODE_10979_length_285_cov_15.896341:1-285 changes to pilon.changes [pilon] Writing updated NODE_10979_length_285_cov_15.896341_pilon to pilon.fasta [pilon] Writing NODE_10980_length_285_cov_15.231707:1-285 changes to pilon.changes [pilon] Writing updated NODE_10980_length_285_cov_15.231707_pilon to pilon.fasta [pilon] Writing NODE_10981_length_285_cov_15.134146:1-285 changes to pilon.changes [pilon] Writing updated NODE_10981_length_285_cov_15.134146_pilon to pilon.fasta [pilon] Writing NODE_10982_length_285_cov_14.926829:1-285 changes to pilon.changes [pilon] Writing updated NODE_10982_length_285_cov_14.926829_pilon to pilon.fasta [pilon] Writing NODE_10983_length_285_cov_14.756098:1-285 changes to pilon.changes [pilon] Writing updated NODE_10983_length_285_cov_14.756098_pilon to pilon.fasta [pilon] Writing NODE_10984_length_285_cov_14.542683:1-285 changes to pilon.changes [pilon] Writing updated NODE_10984_length_285_cov_14.542683_pilon to pilon.fasta [pilon] Writing NODE_10985_length_285_cov_12.896341:1-285 changes to pilon.changes [pilon] Writing updated NODE_10985_length_285_cov_12.896341_pilon to pilon.fasta [pilon] Writing NODE_10986_length_285_cov_12.847561:1-285 changes to pilon.changes [pilon] Writing updated NODE_10986_length_285_cov_12.847561_pilon to pilon.fasta [pilon] Writing NODE_10987_length_285_cov_12.274390:1-285 changes to pilon.changes [pilon] Writing updated NODE_10987_length_285_cov_12.274390_pilon to pilon.fasta [pilon] Writing NODE_10988_length_285_cov_11.359756:1-285 changes to pilon.changes [pilon] Writing updated NODE_10988_length_285_cov_11.359756_pilon to pilon.fasta [pilon] Writing NODE_10989_length_285_cov_10.024390:1-285 changes to pilon.changes [pilon] Writing updated NODE_10989_length_285_cov_10.024390_pilon to pilon.fasta [pilon] Writing NODE_10990_length_285_cov_8.945122:1-285 changes to pilon.changes [pilon] Writing updated NODE_10990_length_285_cov_8.945122_pilon to pilon.fasta [pilon] Writing NODE_10991_length_285_cov_8.603659:1-285 changes to pilon.changes [pilon] Writing updated NODE_10991_length_285_cov_8.603659_pilon to pilon.fasta [pilon] Writing NODE_10992_length_285_cov_8.335366:1-285 changes to pilon.changes [pilon] Writing updated NODE_10992_length_285_cov_8.335366_pilon to pilon.fasta [pilon] Writing NODE_10993_length_285_cov_7.451220:1-285 changes to pilon.changes [pilon] Writing updated NODE_10993_length_285_cov_7.451220_pilon to pilon.fasta [pilon] Writing NODE_10994_length_285_cov_7.182927:1-285 changes to pilon.changes [pilon] Writing updated NODE_10994_length_285_cov_7.182927_pilon to pilon.fasta [pilon] Writing NODE_10995_length_285_cov_6.634146:1-285 changes to pilon.changes [pilon] Writing updated NODE_10995_length_285_cov_6.634146_pilon to pilon.fasta [pilon] Writing NODE_10996_length_285_cov_6.475610:1-285 changes to pilon.changes [pilon] Writing updated NODE_10996_length_285_cov_6.475610_pilon to pilon.fasta [pilon] Writing NODE_10997_length_285_cov_6.384146:1-285 changes to pilon.changes [pilon] Writing updated NODE_10997_length_285_cov_6.384146_pilon to pilon.fasta [pilon] Writing NODE_10998_length_285_cov_6.292683:1-285 changes to pilon.changes [pilon] Writing updated NODE_10998_length_285_cov_6.292683_pilon to pilon.fasta [pilon] Writing NODE_10999_length_285_cov_6.262195:1-285 changes to pilon.changes [pilon] Writing updated NODE_10999_length_285_cov_6.262195_pilon to pilon.fasta [pilon] Writing NODE_11000_length_285_cov_6.048780:1-285 changes to pilon.changes [pilon] Writing updated NODE_11000_length_285_cov_6.048780_pilon to pilon.fasta [pilon] Writing NODE_11001_length_285_cov_1.292683:1-285 changes to pilon.changes [pilon] Writing updated NODE_11001_length_285_cov_1.292683_pilon to pilon.fasta [pilon] Writing NODE_11002_length_284_cov_34.134969:1-284 changes to pilon.changes [pilon] Writing updated NODE_11002_length_284_cov_34.134969_pilon to pilon.fasta [pilon] Writing NODE_11003_length_284_cov_31.674847:1-284 changes to pilon.changes [pilon] Writing updated NODE_11003_length_284_cov_31.674847_pilon to pilon.fasta [pilon] Writing NODE_11004_length_284_cov_24.607362:1-284 changes to pilon.changes [pilon] Writing updated NODE_11004_length_284_cov_24.607362_pilon to pilon.fasta [pilon] Writing NODE_11005_length_284_cov_22.042945:1-284 changes to pilon.changes [pilon] Writing updated NODE_11005_length_284_cov_22.042945_pilon to pilon.fasta [pilon] Writing NODE_11006_length_284_cov_20.595092:1-284 changes to pilon.changes [pilon] Writing updated NODE_11006_length_284_cov_20.595092_pilon to pilon.fasta [pilon] Writing NODE_11007_length_284_cov_19.380368:1-284 changes to pilon.changes [pilon] Writing updated NODE_11007_length_284_cov_19.380368_pilon to pilon.fasta [pilon] Writing NODE_11008_length_284_cov_15.478528:1-284 changes to pilon.changes [pilon] Writing updated NODE_11008_length_284_cov_15.478528_pilon to pilon.fasta [pilon] Writing NODE_11009_length_284_cov_14.441718:1-284 changes to pilon.changes [pilon] Writing updated NODE_11009_length_284_cov_14.441718_pilon to pilon.fasta [pilon] Writing NODE_11010_length_284_cov_10.601227:1-284 changes to pilon.changes [pilon] Writing updated NODE_11010_length_284_cov_10.601227_pilon to pilon.fasta [pilon] Writing NODE_11011_length_284_cov_5.723926:1-284 changes to pilon.changes [pilon] Writing updated NODE_11011_length_284_cov_5.723926_pilon to pilon.fasta [pilon] Writing NODE_11012_length_284_cov_2.889571:1-284 changes to pilon.changes [pilon] Writing updated NODE_11012_length_284_cov_2.889571_pilon to pilon.fasta [pilon] Writing NODE_11013_length_283_cov_32.154321:1-283 changes to pilon.changes [pilon] Writing updated NODE_11013_length_283_cov_32.154321_pilon to pilon.fasta [pilon] Writing NODE_11014_length_283_cov_22.567901:1-283 changes to pilon.changes [pilon] Writing updated NODE_11014_length_283_cov_22.567901_pilon to pilon.fasta [pilon] Writing NODE_11015_length_283_cov_18.944444:1-283 changes to pilon.changes [pilon] Writing updated NODE_11015_length_283_cov_18.944444_pilon to pilon.fasta [pilon] Writing NODE_11016_length_283_cov_12.623457:1-283 changes to pilon.changes [pilon] Writing updated NODE_11016_length_283_cov_12.623457_pilon to pilon.fasta [pilon] Writing NODE_11017_length_283_cov_1.123457:1-283 changes to pilon.changes [pilon] Writing updated NODE_11017_length_283_cov_1.123457_pilon to pilon.fasta [pilon] Writing NODE_11018_length_282_cov_45.397516:1-282 changes to pilon.changes [pilon] Writing updated NODE_11018_length_282_cov_45.397516_pilon to pilon.fasta [pilon] Writing NODE_11019_length_282_cov_36.459627:1-282 changes to pilon.changes [pilon] Writing updated NODE_11019_length_282_cov_36.459627_pilon to pilon.fasta [pilon] Writing NODE_11020_length_282_cov_34.981366:1-282 changes to pilon.changes [pilon] Writing updated NODE_11020_length_282_cov_34.981366_pilon to pilon.fasta [pilon] Writing NODE_11021_length_282_cov_28.658385:1-282 changes to pilon.changes [pilon] Writing updated NODE_11021_length_282_cov_28.658385_pilon to pilon.fasta [pilon] Writing NODE_11022_length_282_cov_27.291925:1-282 changes to pilon.changes [pilon] Writing updated NODE_11022_length_282_cov_27.291925_pilon to pilon.fasta [pilon] Writing NODE_11023_length_282_cov_25.583851:1-282 changes to pilon.changes [pilon] Writing updated NODE_11023_length_282_cov_25.583851_pilon to pilon.fasta [pilon] Writing NODE_11024_length_282_cov_22.086957:1-282 changes to pilon.changes [pilon] Writing updated NODE_11024_length_282_cov_22.086957_pilon to pilon.fasta [pilon] Writing NODE_11025_length_282_cov_22.012422:1-282 changes to pilon.changes [pilon] Writing updated NODE_11025_length_282_cov_22.012422_pilon to pilon.fasta [pilon] Writing NODE_11026_length_282_cov_20.571429:1-282 changes to pilon.changes [pilon] Writing updated NODE_11026_length_282_cov_20.571429_pilon to pilon.fasta [pilon] Writing NODE_11027_length_282_cov_19.763975:1-282 changes to pilon.changes [pilon] Writing updated NODE_11027_length_282_cov_19.763975_pilon to pilon.fasta [pilon] Writing NODE_11028_length_282_cov_19.633540:1-282 changes to pilon.changes [pilon] Writing updated NODE_11028_length_282_cov_19.633540_pilon to pilon.fasta [pilon] Writing NODE_11029_length_282_cov_18.720497:1-282 changes to pilon.changes [pilon] Writing updated NODE_11029_length_282_cov_18.720497_pilon to pilon.fasta [pilon] Writing NODE_11030_length_282_cov_18.633540:1-282 changes to pilon.changes [pilon] Writing updated NODE_11030_length_282_cov_18.633540_pilon to pilon.fasta [pilon] Writing NODE_11031_length_282_cov_17.832298:1-282 changes to pilon.changes [pilon] Writing updated NODE_11031_length_282_cov_17.832298_pilon to pilon.fasta [pilon] Writing NODE_11032_length_282_cov_17.254658:1-282 changes to pilon.changes [pilon] Writing updated NODE_11032_length_282_cov_17.254658_pilon to pilon.fasta [pilon] Writing NODE_11033_length_282_cov_16.732919:1-282 changes to pilon.changes [pilon] Writing updated NODE_11033_length_282_cov_16.732919_pilon to pilon.fasta [pilon] Writing NODE_11034_length_282_cov_16.645963:1-282 changes to pilon.changes [pilon] Writing updated NODE_11034_length_282_cov_16.645963_pilon to pilon.fasta [pilon] Writing NODE_11035_length_282_cov_16.043478:1-282 changes to pilon.changes [pilon] Writing updated NODE_11035_length_282_cov_16.043478_pilon to pilon.fasta [pilon] Writing NODE_11036_length_282_cov_14.757764:1-282 changes to pilon.changes [pilon] Writing updated NODE_11036_length_282_cov_14.757764_pilon to pilon.fasta [pilon] Writing NODE_11037_length_282_cov_14.478261:1-282 changes to pilon.changes [pilon] Writing updated NODE_11037_length_282_cov_14.478261_pilon to pilon.fasta [pilon] Writing NODE_11038_length_282_cov_14.180124:1-282 changes to pilon.changes [pilon] Writing updated NODE_11038_length_282_cov_14.180124_pilon to pilon.fasta [pilon] Writing NODE_11039_length_282_cov_14.118012:1-282 changes to pilon.changes [pilon] Writing updated NODE_11039_length_282_cov_14.118012_pilon to pilon.fasta [pilon] Writing NODE_11040_length_282_cov_12.944099:1-282 changes to pilon.changes [pilon] Writing updated NODE_11040_length_282_cov_12.944099_pilon to pilon.fasta [pilon] Writing NODE_11041_length_282_cov_11.099379:1-282 changes to pilon.changes [pilon] Writing updated NODE_11041_length_282_cov_11.099379_pilon to pilon.fasta [pilon] Writing NODE_11042_length_282_cov_10.391304:1-282 changes to pilon.changes [pilon] Writing updated NODE_11042_length_282_cov_10.391304_pilon to pilon.fasta [pilon] Writing NODE_11043_length_282_cov_10.155280:1-282 changes to pilon.changes [pilon] Writing updated NODE_11043_length_282_cov_10.155280_pilon to pilon.fasta [pilon] Writing NODE_11044_length_282_cov_9.664596:1-282 changes to pilon.changes [pilon] Writing updated NODE_11044_length_282_cov_9.664596_pilon to pilon.fasta [pilon] Writing NODE_11045_length_282_cov_9.540373:1-282 changes to pilon.changes [pilon] Writing updated NODE_11045_length_282_cov_9.540373_pilon to pilon.fasta [pilon] Writing NODE_11046_length_282_cov_9.273292:1-282 changes to pilon.changes [pilon] Writing updated NODE_11046_length_282_cov_9.273292_pilon to pilon.fasta [pilon] Writing NODE_11047_length_282_cov_8.906832:1-282 changes to pilon.changes [pilon] Writing updated NODE_11047_length_282_cov_8.906832_pilon to pilon.fasta [pilon] Writing NODE_11048_length_282_cov_8.664596:1-282 changes to pilon.changes [pilon] Writing updated NODE_11048_length_282_cov_8.664596_pilon to pilon.fasta [pilon] Writing NODE_11049_length_282_cov_8.515528:1-282 changes to pilon.changes [pilon] Writing updated NODE_11049_length_282_cov_8.515528_pilon to pilon.fasta [pilon] Writing NODE_11050_length_282_cov_8.229814:1-282 changes to pilon.changes [pilon] Writing updated NODE_11050_length_282_cov_8.229814_pilon to pilon.fasta [pilon] Writing NODE_11051_length_282_cov_7.913043:1-282 changes to pilon.changes [pilon] Writing updated NODE_11051_length_282_cov_7.913043_pilon to pilon.fasta [pilon] Writing NODE_11052_length_282_cov_6.894410:1-282 changes to pilon.changes [pilon] Writing updated NODE_11052_length_282_cov_6.894410_pilon to pilon.fasta [pilon] Writing NODE_11053_length_281_cov_37.618750:1-281 changes to pilon.changes [pilon] Writing updated NODE_11053_length_281_cov_37.618750_pilon to pilon.fasta [pilon] Writing NODE_11054_length_281_cov_33.981250:1-281 changes to pilon.changes [pilon] Writing updated NODE_11054_length_281_cov_33.981250_pilon to pilon.fasta [pilon] Writing NODE_11055_length_281_cov_31.850000:1-281 changes to pilon.changes [pilon] Writing updated NODE_11055_length_281_cov_31.850000_pilon to pilon.fasta [pilon] Writing NODE_11056_length_281_cov_19.762500:1-281 changes to pilon.changes [pilon] Writing updated NODE_11056_length_281_cov_19.762500_pilon to pilon.fasta [pilon] Writing NODE_11057_length_281_cov_8.800000:1-281 changes to pilon.changes [pilon] Writing updated NODE_11057_length_281_cov_8.800000_pilon to pilon.fasta [pilon] Writing NODE_11058_length_281_cov_8.750000:1-281 changes to pilon.changes [pilon] Writing updated NODE_11058_length_281_cov_8.750000_pilon to pilon.fasta [pilon] Writing NODE_11059_length_281_cov_8.512500:1-281 changes to pilon.changes [pilon] Writing updated NODE_11059_length_281_cov_8.512500_pilon to pilon.fasta [pilon] Writing NODE_11060_length_281_cov_8.456250:1-281 changes to pilon.changes [pilon] Writing updated NODE_11060_length_281_cov_8.456250_pilon to pilon.fasta [pilon] Writing NODE_11061_length_281_cov_6.825000:1-281 changes to pilon.changes [pilon] Writing updated NODE_11061_length_281_cov_6.825000_pilon to pilon.fasta [pilon] Writing NODE_11062_length_281_cov_6.337500:1-281 changes to pilon.changes [pilon] Writing updated NODE_11062_length_281_cov_6.337500_pilon to pilon.fasta [pilon] Writing NODE_11063_length_281_cov_5.425000:1-281 changes to pilon.changes [pilon] Writing updated NODE_11063_length_281_cov_5.425000_pilon to pilon.fasta [pilon] Writing NODE_11064_length_281_cov_1.537500:1-281 changes to pilon.changes [pilon] Writing updated NODE_11064_length_281_cov_1.537500_pilon to pilon.fasta [pilon] Writing NODE_11065_length_280_cov_30.855346:1-280 changes to pilon.changes [pilon] Writing updated NODE_11065_length_280_cov_30.855346_pilon to pilon.fasta [pilon] Writing NODE_11066_length_280_cov_26.943396:1-280 changes to pilon.changes [pilon] Writing updated NODE_11066_length_280_cov_26.943396_pilon to pilon.fasta [pilon] Writing NODE_11067_length_280_cov_25.289308:1-280 changes to pilon.changes [pilon] Writing updated NODE_11067_length_280_cov_25.289308_pilon to pilon.fasta [pilon] Writing NODE_11068_length_280_cov_24.484277:1-280 changes to pilon.changes [pilon] Writing updated NODE_11068_length_280_cov_24.484277_pilon to pilon.fasta [pilon] Writing NODE_11069_length_280_cov_24.389937:1-280 changes to pilon.changes [pilon] Writing updated NODE_11069_length_280_cov_24.389937_pilon to pilon.fasta [pilon] Writing NODE_11070_length_280_cov_23.987421:1-280 changes to pilon.changes [pilon] Writing updated NODE_11070_length_280_cov_23.987421_pilon to pilon.fasta [pilon] Writing NODE_11071_length_280_cov_22.283019:1-280 changes to pilon.changes [pilon] Writing updated NODE_11071_length_280_cov_22.283019_pilon to pilon.fasta [pilon] Writing NODE_11072_length_280_cov_19.289308:1-280 changes to pilon.changes [pilon] Writing updated NODE_11072_length_280_cov_19.289308_pilon to pilon.fasta [pilon] Writing NODE_11073_length_280_cov_19.232704:1-280 changes to pilon.changes [pilon] Writing updated NODE_11073_length_280_cov_19.232704_pilon to pilon.fasta [pilon] Writing NODE_11074_length_280_cov_17.465409:1-280 changes to pilon.changes [pilon] Writing updated NODE_11074_length_280_cov_17.465409_pilon to pilon.fasta [pilon] Writing NODE_11075_length_280_cov_17.364780:1-280 changes to pilon.changes [pilon] Writing updated NODE_11075_length_280_cov_17.364780_pilon to pilon.fasta [pilon] Writing NODE_11076_length_280_cov_17.251572:1-280 changes to pilon.changes [pilon] Writing updated NODE_11076_length_280_cov_17.251572_pilon to pilon.fasta [pilon] Writing NODE_11077_length_280_cov_16.704403:1-280 changes to pilon.changes [pilon] Writing updated NODE_11077_length_280_cov_16.704403_pilon to pilon.fasta [pilon] Writing NODE_11078_length_280_cov_14.849057:1-280 changes to pilon.changes [pilon] Writing updated NODE_11078_length_280_cov_14.849057_pilon to pilon.fasta [pilon] Writing NODE_11079_length_280_cov_13.528302:1-280 changes to pilon.changes [pilon] Writing updated NODE_11079_length_280_cov_13.528302_pilon to pilon.fasta [pilon] Writing NODE_11080_length_280_cov_13.477987:1-280 changes to pilon.changes [pilon] Writing updated NODE_11080_length_280_cov_13.477987_pilon to pilon.fasta [pilon] Writing NODE_11081_length_280_cov_12.779874:1-280 changes to pilon.changes [pilon] Writing updated NODE_11081_length_280_cov_12.779874_pilon to pilon.fasta [pilon] Writing NODE_11082_length_280_cov_9.566038:1-280 changes to pilon.changes [pilon] Writing updated NODE_11082_length_280_cov_9.566038_pilon to pilon.fasta [pilon] Writing NODE_11083_length_280_cov_8.830189:1-280 changes to pilon.changes [pilon] Writing updated NODE_11083_length_280_cov_8.830189_pilon to pilon.fasta [pilon] Writing NODE_11084_length_280_cov_7.987421:1-280 changes to pilon.changes [pilon] Writing updated NODE_11084_length_280_cov_7.987421_pilon to pilon.fasta [pilon] Writing NODE_11085_length_280_cov_7.723270:1-280 changes to pilon.changes [pilon] Writing updated NODE_11085_length_280_cov_7.723270_pilon to pilon.fasta [pilon] Writing NODE_11086_length_280_cov_7.245283:1-280 changes to pilon.changes [pilon] Writing updated NODE_11086_length_280_cov_7.245283_pilon to pilon.fasta [pilon] Writing NODE_11087_length_280_cov_6.062893:1-280 changes to pilon.changes [pilon] Writing updated NODE_11087_length_280_cov_6.062893_pilon to pilon.fasta [pilon] Writing NODE_11088_length_280_cov_5.232704:1-280 changes to pilon.changes [pilon] Writing updated NODE_11088_length_280_cov_5.232704_pilon to pilon.fasta [pilon] Writing NODE_11089_length_279_cov_42.531646:1-279 changes to pilon.changes [pilon] Writing updated NODE_11089_length_279_cov_42.531646_pilon to pilon.fasta [pilon] Writing NODE_11090_length_279_cov_34.367089:1-279 changes to pilon.changes [pilon] Writing updated NODE_11090_length_279_cov_34.367089_pilon to pilon.fasta [pilon] Writing NODE_11091_length_279_cov_33.265823:1-279 changes to pilon.changes [pilon] Writing updated NODE_11091_length_279_cov_33.265823_pilon to pilon.fasta [pilon] Writing NODE_11092_length_279_cov_31.582278:1-279 changes to pilon.changes [pilon] Writing updated NODE_11092_length_279_cov_31.582278_pilon to pilon.fasta [pilon] Writing NODE_11093_length_279_cov_30.424051:1-279 changes to pilon.changes [pilon] Writing updated NODE_11093_length_279_cov_30.424051_pilon to pilon.fasta [pilon] Writing NODE_11094_length_279_cov_29.930380:1-279 changes to pilon.changes [pilon] Writing updated NODE_11094_length_279_cov_29.930380_pilon to pilon.fasta [pilon] Writing NODE_11095_length_279_cov_29.208861:1-279 changes to pilon.changes [pilon] Writing updated NODE_11095_length_279_cov_29.208861_pilon to pilon.fasta [pilon] Writing NODE_11096_length_279_cov_29.082278:1-279 changes to pilon.changes [pilon] Writing updated NODE_11096_length_279_cov_29.082278_pilon to pilon.fasta [pilon] Writing NODE_11097_length_279_cov_28.639241:1-279 changes to pilon.changes [pilon] Writing updated NODE_11097_length_279_cov_28.639241_pilon to pilon.fasta [pilon] Writing NODE_11098_length_279_cov_28.272152:1-279 changes to pilon.changes [pilon] Writing updated NODE_11098_length_279_cov_28.272152_pilon to pilon.fasta [pilon] Writing NODE_11099_length_279_cov_26.449367:1-279 changes to pilon.changes [pilon] Writing updated NODE_11099_length_279_cov_26.449367_pilon to pilon.fasta [pilon] Writing NODE_11100_length_279_cov_26.405063:1-279 changes to pilon.changes [pilon] Writing updated NODE_11100_length_279_cov_26.405063_pilon to pilon.fasta [pilon] Writing NODE_11101_length_279_cov_25.582278:1-279 changes to pilon.changes [pilon] Writing updated NODE_11101_length_279_cov_25.582278_pilon to pilon.fasta [pilon] Writing NODE_11102_length_279_cov_25.487342:1-279 changes to pilon.changes [pilon] Writing updated NODE_11102_length_279_cov_25.487342_pilon to pilon.fasta [pilon] Writing NODE_11103_length_279_cov_24.702532:1-279 changes to pilon.changes [pilon] Writing updated NODE_11103_length_279_cov_24.702532_pilon to pilon.fasta [pilon] Writing NODE_11104_length_279_cov_23.335443:1-279 changes to pilon.changes [pilon] Writing updated NODE_11104_length_279_cov_23.335443_pilon to pilon.fasta [pilon] Writing NODE_11105_length_279_cov_22.120253:1-279 changes to pilon.changes [pilon] Writing updated NODE_11105_length_279_cov_22.120253_pilon to pilon.fasta [pilon] Writing NODE_11106_length_279_cov_22.107595:1-279 changes to pilon.changes [pilon] Writing updated NODE_11106_length_279_cov_22.107595_pilon to pilon.fasta [pilon] Writing NODE_11107_length_279_cov_21.151899:1-279 changes to pilon.changes [pilon] Writing updated NODE_11107_length_279_cov_21.151899_pilon to pilon.fasta [pilon] Writing NODE_11108_length_279_cov_19.670886:1-279 changes to pilon.changes [pilon] Writing updated NODE_11108_length_279_cov_19.670886_pilon to pilon.fasta [pilon] Writing NODE_11109_length_279_cov_19.455696:1-279 changes to pilon.changes [pilon] Writing updated NODE_11109_length_279_cov_19.455696_pilon to pilon.fasta [pilon] Writing NODE_11110_length_279_cov_18.936709:1-279 changes to pilon.changes [pilon] Writing updated NODE_11110_length_279_cov_18.936709_pilon to pilon.fasta [pilon] Writing NODE_11111_length_279_cov_18.601266:1-279 changes to pilon.changes [pilon] Writing updated NODE_11111_length_279_cov_18.601266_pilon to pilon.fasta [pilon] Writing NODE_11112_length_279_cov_18.474684:1-279 changes to pilon.changes [pilon] Writing updated NODE_11112_length_279_cov_18.474684_pilon to pilon.fasta [pilon] Writing NODE_11113_length_279_cov_17.746835:1-279 changes to pilon.changes [pilon] Writing updated NODE_11113_length_279_cov_17.746835_pilon to pilon.fasta [pilon] Writing NODE_11114_length_279_cov_17.594937:1-279 changes to pilon.changes [pilon] Writing updated NODE_11114_length_279_cov_17.594937_pilon to pilon.fasta [pilon] Writing NODE_11115_length_279_cov_16.500000:1-279 changes to pilon.changes [pilon] Writing updated NODE_11115_length_279_cov_16.500000_pilon to pilon.fasta [pilon] Writing NODE_11116_length_279_cov_15.962025:1-279 changes to pilon.changes [pilon] Writing updated NODE_11116_length_279_cov_15.962025_pilon to pilon.fasta [pilon] Writing NODE_11117_length_279_cov_15.113924:1-279 changes to pilon.changes [pilon] Writing updated NODE_11117_length_279_cov_15.113924_pilon to pilon.fasta [pilon] Writing NODE_11118_length_279_cov_15.107595:1-279 changes to pilon.changes [pilon] Writing updated NODE_11118_length_279_cov_15.107595_pilon to pilon.fasta [pilon] Writing NODE_11119_length_279_cov_14.974684:1-279 changes to pilon.changes [pilon] Writing updated NODE_11119_length_279_cov_14.974684_pilon to pilon.fasta [pilon] Writing NODE_11120_length_279_cov_14.702532:1-279 changes to pilon.changes [pilon] Writing updated NODE_11120_length_279_cov_14.702532_pilon to pilon.fasta [pilon] Writing NODE_11121_length_279_cov_14.183544:1-279 changes to pilon.changes [pilon] Writing updated NODE_11121_length_279_cov_14.183544_pilon to pilon.fasta [pilon] Writing NODE_11122_length_279_cov_12.987342:1-279 changes to pilon.changes [pilon] Writing updated NODE_11122_length_279_cov_12.987342_pilon to pilon.fasta [pilon] Writing NODE_11123_length_279_cov_12.436709:1-279 changes to pilon.changes [pilon] Writing updated NODE_11123_length_279_cov_12.436709_pilon to pilon.fasta [pilon] Writing NODE_11124_length_279_cov_11.924051:1-279 changes to pilon.changes [pilon] Writing updated NODE_11124_length_279_cov_11.924051_pilon to pilon.fasta [pilon] Writing NODE_11125_length_279_cov_10.613924:1-279 changes to pilon.changes [pilon] Writing updated NODE_11125_length_279_cov_10.613924_pilon to pilon.fasta [pilon] Writing NODE_11126_length_279_cov_10.031646:1-279 changes to pilon.changes [pilon] Writing updated NODE_11126_length_279_cov_10.031646_pilon to pilon.fasta [pilon] Writing NODE_11127_length_279_cov_9.481013:1-279 changes to pilon.changes [pilon] Writing updated NODE_11127_length_279_cov_9.481013_pilon to pilon.fasta [pilon] Writing NODE_11128_length_279_cov_9.462025:1-279 changes to pilon.changes [pilon] Writing updated NODE_11128_length_279_cov_9.462025_pilon to pilon.fasta [pilon] Writing NODE_11129_length_279_cov_9.373418:1-279 changes to pilon.changes [pilon] Writing updated NODE_11129_length_279_cov_9.373418_pilon to pilon.fasta [pilon] Writing NODE_11130_length_279_cov_9.031646:1-279 changes to pilon.changes [pilon] Writing updated NODE_11130_length_279_cov_9.031646_pilon to pilon.fasta [pilon] Writing NODE_11131_length_279_cov_9.006329:1-279 changes to pilon.changes [pilon] Writing updated NODE_11131_length_279_cov_9.006329_pilon to pilon.fasta [pilon] Writing NODE_11132_length_279_cov_8.607595:1-279 changes to pilon.changes [pilon] Writing updated NODE_11132_length_279_cov_8.607595_pilon to pilon.fasta [pilon] Writing NODE_11133_length_279_cov_8.101266:1-279 changes to pilon.changes [pilon] Writing updated NODE_11133_length_279_cov_8.101266_pilon to pilon.fasta [pilon] Writing NODE_11134_length_279_cov_7.379747:1-279 changes to pilon.changes [pilon] Writing updated NODE_11134_length_279_cov_7.379747_pilon to pilon.fasta [pilon] Writing NODE_11135_length_279_cov_5.689873:1-279 changes to pilon.changes [pilon] Writing updated NODE_11135_length_279_cov_5.689873_pilon to pilon.fasta [pilon] Writing NODE_11136_length_279_cov_5.651899:1-279 changes to pilon.changes [pilon] Writing updated NODE_11136_length_279_cov_5.651899_pilon to pilon.fasta [pilon] Writing NODE_11137_length_279_cov_5.544304:1-279 changes to pilon.changes [pilon] Writing updated NODE_11137_length_279_cov_5.544304_pilon to pilon.fasta [pilon] Writing NODE_11138_length_279_cov_5.158228:1-279 changes to pilon.changes [pilon] Writing updated NODE_11138_length_279_cov_5.158228_pilon to pilon.fasta [pilon] Writing NODE_11139_length_279_cov_1.246835:1-279 changes to pilon.changes [pilon] Writing updated NODE_11139_length_279_cov_1.246835_pilon to pilon.fasta [pilon] Writing NODE_11140_length_278_cov_51.585987:1-278 changes to pilon.changes [pilon] Writing updated NODE_11140_length_278_cov_51.585987_pilon to pilon.fasta [pilon] Writing NODE_11141_length_278_cov_48.515924:1-278 changes to pilon.changes [pilon] Writing updated NODE_11141_length_278_cov_48.515924_pilon to pilon.fasta [pilon] Writing NODE_11142_length_278_cov_24.872611:1-278 changes to pilon.changes [pilon] Writing updated NODE_11142_length_278_cov_24.872611_pilon to pilon.fasta [pilon] Writing NODE_11143_length_278_cov_23.675159:1-278 changes to pilon.changes [pilon] Writing updated NODE_11143_length_278_cov_23.675159_pilon to pilon.fasta [pilon] Writing NODE_11144_length_278_cov_21.828025:1-278 changes to pilon.changes [pilon] Writing updated NODE_11144_length_278_cov_21.828025_pilon to pilon.fasta [pilon] Writing NODE_11145_length_278_cov_14.592357:1-278 changes to pilon.changes [pilon] Writing updated NODE_11145_length_278_cov_14.592357_pilon to pilon.fasta [pilon] Writing NODE_11146_length_278_cov_9.968153:1-278 changes to pilon.changes [pilon] Writing updated NODE_11146_length_278_cov_9.968153_pilon to pilon.fasta [pilon] Writing NODE_11147_length_278_cov_7.955414:1-278 changes to pilon.changes [pilon] Writing updated NODE_11147_length_278_cov_7.955414_pilon to pilon.fasta [pilon] Writing NODE_11148_length_278_cov_7.777070:1-278 changes to pilon.changes [pilon] Writing updated NODE_11148_length_278_cov_7.777070_pilon to pilon.fasta [pilon] Writing NODE_11149_length_278_cov_7.617834:1-278 changes to pilon.changes [pilon] Writing updated NODE_11149_length_278_cov_7.617834_pilon to pilon.fasta [pilon] Writing NODE_11150_length_278_cov_7.299363:1-278 changes to pilon.changes [pilon] Writing updated NODE_11150_length_278_cov_7.299363_pilon to pilon.fasta [pilon] Writing NODE_11151_length_277_cov_22.269231:1-277 changes to pilon.changes [pilon] Writing updated NODE_11151_length_277_cov_22.269231_pilon to pilon.fasta [pilon] Writing NODE_11152_length_277_cov_20.557692:1-277 changes to pilon.changes [pilon] Writing updated NODE_11152_length_277_cov_20.557692_pilon to pilon.fasta [pilon] Writing NODE_11153_length_277_cov_19.833333:1-277 changes to pilon.changes [pilon] Writing updated NODE_11153_length_277_cov_19.833333_pilon to pilon.fasta [pilon] Writing NODE_11154_length_277_cov_18.108974:1-277 changes to pilon.changes [pilon] Writing updated NODE_11154_length_277_cov_18.108974_pilon to pilon.fasta [pilon] Writing NODE_11155_length_277_cov_17.333333:1-277 changes to pilon.changes [pilon] Writing updated NODE_11155_length_277_cov_17.333333_pilon to pilon.fasta [pilon] Writing NODE_11156_length_277_cov_16.211538:1-277 changes to pilon.changes [pilon] Writing updated NODE_11156_length_277_cov_16.211538_pilon to pilon.fasta [pilon] Writing NODE_11157_length_277_cov_15.897436:1-277 changes to pilon.changes [pilon] Writing updated NODE_11157_length_277_cov_15.897436_pilon to pilon.fasta [pilon] Writing NODE_11158_length_277_cov_15.134615:1-277 changes to pilon.changes [pilon] Writing updated NODE_11158_length_277_cov_15.134615_pilon to pilon.fasta [pilon] Writing NODE_11159_length_277_cov_13.583333:1-277 changes to pilon.changes [pilon] Writing updated NODE_11159_length_277_cov_13.583333_pilon to pilon.fasta [pilon] Writing NODE_11160_length_277_cov_13.198718:1-277 changes to pilon.changes [pilon] Writing updated NODE_11160_length_277_cov_13.198718_pilon to pilon.fasta [pilon] Writing NODE_11161_length_277_cov_9.923077:1-277 changes to pilon.changes [pilon] Writing updated NODE_11161_length_277_cov_9.923077_pilon to pilon.fasta [pilon] Writing NODE_11162_length_277_cov_9.743590:1-277 changes to pilon.changes [pilon] Writing updated NODE_11162_length_277_cov_9.743590_pilon to pilon.fasta [pilon] Writing NODE_11163_length_277_cov_6.294872:1-277 changes to pilon.changes [pilon] Writing updated NODE_11163_length_277_cov_6.294872_pilon to pilon.fasta [pilon] Writing NODE_11164_length_276_cov_37.645161:1-276 changes to pilon.changes [pilon] Writing updated NODE_11164_length_276_cov_37.645161_pilon to pilon.fasta [pilon] Writing NODE_11165_length_276_cov_33.148387:1-276 changes to pilon.changes [pilon] Writing updated NODE_11165_length_276_cov_33.148387_pilon to pilon.fasta [pilon] Writing NODE_11166_length_276_cov_32.729032:1-276 changes to pilon.changes [pilon] Writing updated NODE_11166_length_276_cov_32.729032_pilon to pilon.fasta [pilon] Writing NODE_11167_length_276_cov_32.716129:1-276 changes to pilon.changes [pilon] Writing updated NODE_11167_length_276_cov_32.716129_pilon to pilon.fasta [pilon] Writing NODE_11168_length_276_cov_31.658065:1-276 changes to pilon.changes [pilon] Writing updated NODE_11168_length_276_cov_31.658065_pilon to pilon.fasta [pilon] Writing NODE_11169_length_276_cov_30.348387:1-276 changes to pilon.changes [pilon] Writing updated NODE_11169_length_276_cov_30.348387_pilon to pilon.fasta [pilon] Writing NODE_11170_length_276_cov_30.245161:1-276 changes to pilon.changes [pilon] Writing updated NODE_11170_length_276_cov_30.245161_pilon to pilon.fasta [pilon] Writing NODE_11171_length_276_cov_29.961290:1-276 changes to pilon.changes [pilon] Writing updated NODE_11171_length_276_cov_29.961290_pilon to pilon.fasta [pilon] Writing NODE_11172_length_276_cov_29.845161:1-276 changes to pilon.changes [pilon] Writing updated NODE_11172_length_276_cov_29.845161_pilon to pilon.fasta [pilon] Writing NODE_11173_length_276_cov_28.929032:1-276 changes to pilon.changes [pilon] Writing updated NODE_11173_length_276_cov_28.929032_pilon to pilon.fasta [pilon] Writing NODE_11174_length_276_cov_28.012903:1-276 changes to pilon.changes [pilon] Writing updated NODE_11174_length_276_cov_28.012903_pilon to pilon.fasta [pilon] Writing NODE_11175_length_276_cov_27.883871:1-276 changes to pilon.changes [pilon] Writing updated NODE_11175_length_276_cov_27.883871_pilon to pilon.fasta [pilon] Writing NODE_11176_length_276_cov_26.154839:1-276 changes to pilon.changes [pilon] Writing updated NODE_11176_length_276_cov_26.154839_pilon to pilon.fasta [pilon] Writing NODE_11177_length_276_cov_23.464516:1-276 changes to pilon.changes [pilon] Writing updated NODE_11177_length_276_cov_23.464516_pilon to pilon.fasta [pilon] Writing NODE_11178_length_276_cov_22.187097:1-276 changes to pilon.changes [pilon] Writing updated NODE_11178_length_276_cov_22.187097_pilon to pilon.fasta [pilon] Writing NODE_11179_length_276_cov_22.103226:1-276 changes to pilon.changes [pilon] Writing updated NODE_11179_length_276_cov_22.103226_pilon to pilon.fasta [pilon] Writing NODE_11180_length_276_cov_21.870968:1-276 changes to pilon.changes [pilon] Writing updated NODE_11180_length_276_cov_21.870968_pilon to pilon.fasta [pilon] Writing NODE_11181_length_276_cov_21.529032:1-276 changes to pilon.changes [pilon] Writing updated NODE_11181_length_276_cov_21.529032_pilon to pilon.fasta [pilon] Writing NODE_11182_length_276_cov_19.703226:1-276 changes to pilon.changes [pilon] Writing updated NODE_11182_length_276_cov_19.703226_pilon to pilon.fasta [pilon] Writing NODE_11183_length_276_cov_19.677419:1-276 changes to pilon.changes [pilon] Writing updated NODE_11183_length_276_cov_19.677419_pilon to pilon.fasta [pilon] Writing NODE_11184_length_276_cov_19.541935:1-276 changes to pilon.changes [pilon] Writing updated NODE_11184_length_276_cov_19.541935_pilon to pilon.fasta [pilon] Writing NODE_11185_length_276_cov_19.258065:1-276 changes to pilon.changes [pilon] Writing updated NODE_11185_length_276_cov_19.258065_pilon to pilon.fasta [pilon] Writing NODE_11186_length_276_cov_18.438710:1-276 changes to pilon.changes [pilon] Writing updated NODE_11186_length_276_cov_18.438710_pilon to pilon.fasta [pilon] Writing NODE_11187_length_276_cov_18.316129:1-276 changes to pilon.changes [pilon] Writing updated NODE_11187_length_276_cov_18.316129_pilon to pilon.fasta [pilon] Writing NODE_11188_length_276_cov_18.025806:1-276 changes to pilon.changes [pilon] Writing updated NODE_11188_length_276_cov_18.025806_pilon to pilon.fasta [pilon] Writing NODE_11189_length_276_cov_17.025806:1-276 changes to pilon.changes [pilon] Writing updated NODE_11189_length_276_cov_17.025806_pilon to pilon.fasta [pilon] Writing NODE_11190_length_276_cov_16.993548:1-276 changes to pilon.changes [pilon] Writing updated NODE_11190_length_276_cov_16.993548_pilon to pilon.fasta [pilon] Writing NODE_11191_length_276_cov_16.316129:1-276 changes to pilon.changes [pilon] Writing updated NODE_11191_length_276_cov_16.316129_pilon to pilon.fasta [pilon] Writing NODE_11192_length_276_cov_16.219355:1-276 changes to pilon.changes [pilon] Writing updated NODE_11192_length_276_cov_16.219355_pilon to pilon.fasta [pilon] Writing NODE_11193_length_276_cov_15.825806:1-276 changes to pilon.changes [pilon] Writing updated NODE_11193_length_276_cov_15.825806_pilon to pilon.fasta [pilon] Writing NODE_11194_length_276_cov_15.406452:1-276 changes to pilon.changes [pilon] Writing updated NODE_11194_length_276_cov_15.406452_pilon to pilon.fasta [pilon] Writing NODE_11195_length_276_cov_14.309677:1-276 changes to pilon.changes [pilon] Writing updated NODE_11195_length_276_cov_14.309677_pilon to pilon.fasta [pilon] Writing NODE_11196_length_276_cov_14.154839:1-276 changes to pilon.changes [pilon] Writing updated NODE_11196_length_276_cov_14.154839_pilon to pilon.fasta [pilon] Writing NODE_11197_length_276_cov_13.225806:1-276 changes to pilon.changes [pilon] Writing updated NODE_11197_length_276_cov_13.225806_pilon to pilon.fasta [pilon] Writing NODE_11198_length_276_cov_13.135484:1-276 changes to pilon.changes [pilon] Writing updated NODE_11198_length_276_cov_13.135484_pilon to pilon.fasta [pilon] Writing NODE_11199_length_276_cov_13.109677:1-276 changes to pilon.changes [pilon] Writing updated NODE_11199_length_276_cov_13.109677_pilon to pilon.fasta [pilon] Writing NODE_11200_length_276_cov_12.845161:1-276 changes to pilon.changes [pilon] Writing updated NODE_11200_length_276_cov_12.845161_pilon to pilon.fasta [pilon] Writing NODE_11201_length_276_cov_12.806452:1-276 changes to pilon.changes [pilon] Writing updated NODE_11201_length_276_cov_12.806452_pilon to pilon.fasta [pilon] Writing NODE_11202_length_276_cov_12.683871:1-276 changes to pilon.changes [pilon] Writing updated NODE_11202_length_276_cov_12.683871_pilon to pilon.fasta [pilon] Writing NODE_11203_length_276_cov_12.683871:1-276 changes to pilon.changes [pilon] Writing updated NODE_11203_length_276_cov_12.683871_pilon to pilon.fasta [pilon] Writing NODE_11204_length_276_cov_12.503226:1-276 changes to pilon.changes [pilon] Writing updated NODE_11204_length_276_cov_12.503226_pilon to pilon.fasta [pilon] Writing NODE_11205_length_276_cov_10.496774:1-276 changes to pilon.changes [pilon] Writing updated NODE_11205_length_276_cov_10.496774_pilon to pilon.fasta [pilon] Writing NODE_11206_length_276_cov_9.664516:1-276 changes to pilon.changes [pilon] Writing updated NODE_11206_length_276_cov_9.664516_pilon to pilon.fasta [pilon] Writing NODE_11207_length_276_cov_9.490323:1-276 changes to pilon.changes [pilon] Writing updated NODE_11207_length_276_cov_9.490323_pilon to pilon.fasta [pilon] Writing NODE_11208_length_276_cov_9.374194:1-276 changes to pilon.changes [pilon] Writing updated NODE_11208_length_276_cov_9.374194_pilon to pilon.fasta [pilon] Writing NODE_11209_length_276_cov_9.129032:1-276 changes to pilon.changes [pilon] Writing updated NODE_11209_length_276_cov_9.129032_pilon to pilon.fasta [pilon] Writing NODE_11210_length_276_cov_7.509677:1-276 changes to pilon.changes [pilon] Writing updated NODE_11210_length_276_cov_7.509677_pilon to pilon.fasta [pilon] Writing NODE_11211_length_276_cov_7.070968:1-276 changes to pilon.changes [pilon] Writing updated NODE_11211_length_276_cov_7.070968_pilon to pilon.fasta [pilon] Writing NODE_11212_length_276_cov_6.658065:1-276 changes to pilon.changes [pilon] Writing updated NODE_11212_length_276_cov_6.658065_pilon to pilon.fasta [pilon] Writing NODE_11213_length_276_cov_6.612903:1-276 changes to pilon.changes [pilon] Writing updated NODE_11213_length_276_cov_6.612903_pilon to pilon.fasta [pilon] Writing NODE_11214_length_276_cov_5.645161:1-276 changes to pilon.changes [pilon] Writing updated NODE_11214_length_276_cov_5.645161_pilon to pilon.fasta [pilon] Writing NODE_11215_length_276_cov_5.503226:1-276 changes to pilon.changes [pilon] Writing updated NODE_11215_length_276_cov_5.503226_pilon to pilon.fasta [pilon] Writing NODE_11216_length_276_cov_5.225806:1-276 changes to pilon.changes [pilon] Writing updated NODE_11216_length_276_cov_5.225806_pilon to pilon.fasta [pilon] Writing NODE_11217_length_275_cov_24.844156:1-275 changes to pilon.changes [pilon] Writing updated NODE_11217_length_275_cov_24.844156_pilon to pilon.fasta [pilon] Writing NODE_11218_length_275_cov_24.610390:1-275 changes to pilon.changes [pilon] Writing updated NODE_11218_length_275_cov_24.610390_pilon to pilon.fasta [pilon] Writing NODE_11219_length_275_cov_21.558442:1-275 changes to pilon.changes [pilon] Writing updated NODE_11219_length_275_cov_21.558442_pilon to pilon.fasta [pilon] Writing NODE_11220_length_275_cov_18.928571:1-275 changes to pilon.changes [pilon] Writing updated NODE_11220_length_275_cov_18.928571_pilon to pilon.fasta [pilon] Writing NODE_11221_length_275_cov_15.201299:1-275 changes to pilon.changes [pilon] Writing updated NODE_11221_length_275_cov_15.201299_pilon to pilon.fasta [pilon] Writing NODE_11222_length_275_cov_13.331169:1-275 changes to pilon.changes [pilon] Writing updated NODE_11222_length_275_cov_13.331169_pilon to pilon.fasta [pilon] Writing NODE_11223_length_275_cov_3.714286:1-275 changes to pilon.changes [pilon] Writing updated NODE_11223_length_275_cov_3.714286_pilon to pilon.fasta [pilon] Writing NODE_11224_length_274_cov_28.045752:1-274 changes to pilon.changes [pilon] Writing updated NODE_11224_length_274_cov_28.045752_pilon to pilon.fasta [pilon] Writing NODE_11225_length_274_cov_23.032680:1-274 changes to pilon.changes [pilon] Writing updated NODE_11225_length_274_cov_23.032680_pilon to pilon.fasta [pilon] Writing NODE_11226_length_274_cov_22.607843:1-274 changes to pilon.changes [pilon] Writing updated NODE_11226_length_274_cov_22.607843_pilon to pilon.fasta [pilon] Writing NODE_11227_length_274_cov_19.640523:1-274 changes to pilon.changes [pilon] Writing updated NODE_11227_length_274_cov_19.640523_pilon to pilon.fasta [pilon] Writing NODE_11228_length_274_cov_18.359477:1-274 changes to pilon.changes [pilon] Writing updated NODE_11228_length_274_cov_18.359477_pilon to pilon.fasta [pilon] Writing NODE_11229_length_274_cov_18.006536:1-274 changes to pilon.changes [pilon] Writing updated NODE_11229_length_274_cov_18.006536_pilon to pilon.fasta [pilon] Writing NODE_11230_length_274_cov_17.287582:1-274 changes to pilon.changes [pilon] Writing updated NODE_11230_length_274_cov_17.287582_pilon to pilon.fasta [pilon] Writing NODE_11231_length_274_cov_13.411765:1-274 changes to pilon.changes [pilon] Writing updated NODE_11231_length_274_cov_13.411765_pilon to pilon.fasta [pilon] Writing NODE_11232_length_274_cov_12.986928:1-274 changes to pilon.changes [pilon] Writing updated NODE_11232_length_274_cov_12.986928_pilon to pilon.fasta [pilon] Writing NODE_11233_length_274_cov_12.568627:1-274 changes to pilon.changes [pilon] Writing updated NODE_11233_length_274_cov_12.568627_pilon to pilon.fasta [pilon] Writing NODE_11234_length_274_cov_12.444444:1-274 changes to pilon.changes [pilon] Writing updated NODE_11234_length_274_cov_12.444444_pilon to pilon.fasta [pilon] Writing NODE_11235_length_274_cov_10.418301:1-274 changes to pilon.changes [pilon] Writing updated NODE_11235_length_274_cov_10.418301_pilon to pilon.fasta [pilon] Writing NODE_11236_length_274_cov_9.849673:1-274 changes to pilon.changes [pilon] Writing updated NODE_11236_length_274_cov_9.849673_pilon to pilon.fasta [pilon] Writing NODE_11237_length_274_cov_7.830065:1-274 changes to pilon.changes [pilon] Writing updated NODE_11237_length_274_cov_7.830065_pilon to pilon.fasta [pilon] Writing NODE_11238_length_274_cov_7.555556:1-274 changes to pilon.changes [pilon] Writing updated NODE_11238_length_274_cov_7.555556_pilon to pilon.fasta [pilon] Writing NODE_11239_length_274_cov_7.215686:1-274 changes to pilon.changes [pilon] Writing updated NODE_11239_length_274_cov_7.215686_pilon to pilon.fasta [pilon] Writing NODE_11240_length_273_cov_43.493421:1-273 changes to pilon.changes [pilon] Writing updated NODE_11240_length_273_cov_43.493421_pilon to pilon.fasta [pilon] Writing NODE_11241_length_273_cov_31.717105:1-273 changes to pilon.changes [pilon] Writing updated NODE_11241_length_273_cov_31.717105_pilon to pilon.fasta [pilon] Writing NODE_11242_length_273_cov_30.013158:1-273 changes to pilon.changes [pilon] Writing updated NODE_11242_length_273_cov_30.013158_pilon to pilon.fasta [pilon] Writing NODE_11243_length_273_cov_29.703947:1-273 changes to pilon.changes [pilon] Writing updated NODE_11243_length_273_cov_29.703947_pilon to pilon.fasta [pilon] Writing NODE_11244_length_273_cov_29.631579:1-273 changes to pilon.changes [pilon] Writing updated NODE_11244_length_273_cov_29.631579_pilon to pilon.fasta [pilon] Writing NODE_11245_length_273_cov_29.572368:1-273 changes to pilon.changes [pilon] Writing updated NODE_11245_length_273_cov_29.572368_pilon to pilon.fasta [pilon] Writing NODE_11246_length_273_cov_29.256579:1-273 changes to pilon.changes [pilon] Writing updated NODE_11246_length_273_cov_29.256579_pilon to pilon.fasta [pilon] Writing NODE_11247_length_273_cov_25.967105:1-273 changes to pilon.changes [pilon] Writing updated NODE_11247_length_273_cov_25.967105_pilon to pilon.fasta [pilon] Writing NODE_11248_length_273_cov_24.743421:1-273 changes to pilon.changes [pilon] Writing updated NODE_11248_length_273_cov_24.743421_pilon to pilon.fasta [pilon] Writing NODE_11249_length_273_cov_24.375000:1-273 changes to pilon.changes [pilon] Writing updated NODE_11249_length_273_cov_24.375000_pilon to pilon.fasta [pilon] Writing NODE_11250_length_273_cov_24.368421:1-273 changes to pilon.changes [pilon] Writing updated NODE_11250_length_273_cov_24.368421_pilon to pilon.fasta [pilon] Writing NODE_11251_length_273_cov_23.894737:1-273 changes to pilon.changes [pilon] Writing updated NODE_11251_length_273_cov_23.894737_pilon to pilon.fasta [pilon] Writing NODE_11252_length_273_cov_23.513158:1-273 changes to pilon.changes [pilon] Writing updated NODE_11252_length_273_cov_23.513158_pilon to pilon.fasta [pilon] Writing NODE_11253_length_273_cov_23.006579:1-273 changes to pilon.changes [pilon] Writing updated NODE_11253_length_273_cov_23.006579_pilon to pilon.fasta [pilon] Writing NODE_11254_length_273_cov_21.342105:1-273 changes to pilon.changes [pilon] Writing updated NODE_11254_length_273_cov_21.342105_pilon to pilon.fasta [pilon] Writing NODE_11255_length_273_cov_20.717105:1-273 changes to pilon.changes [pilon] Writing updated NODE_11255_length_273_cov_20.717105_pilon to pilon.fasta [pilon] Writing NODE_11256_length_273_cov_19.763158:1-273 changes to pilon.changes [pilon] Writing updated NODE_11256_length_273_cov_19.763158_pilon to pilon.fasta [pilon] Writing NODE_11257_length_273_cov_19.361842:1-273 changes to pilon.changes [pilon] Writing updated NODE_11257_length_273_cov_19.361842_pilon to pilon.fasta [pilon] Writing NODE_11258_length_273_cov_19.190789:1-273 changes to pilon.changes [pilon] Writing updated NODE_11258_length_273_cov_19.190789_pilon to pilon.fasta [pilon] Writing NODE_11259_length_273_cov_19.157895:1-273 changes to pilon.changes [pilon] Writing updated NODE_11259_length_273_cov_19.157895_pilon to pilon.fasta [pilon] Writing NODE_11260_length_273_cov_18.927632:1-273 changes to pilon.changes [pilon] Writing updated NODE_11260_length_273_cov_18.927632_pilon to pilon.fasta [pilon] Writing NODE_11261_length_273_cov_18.473684:1-273 changes to pilon.changes [pilon] Writing updated NODE_11261_length_273_cov_18.473684_pilon to pilon.fasta [pilon] Writing NODE_11262_length_273_cov_18.092105:1-273 changes to pilon.changes [pilon] Writing updated NODE_11262_length_273_cov_18.092105_pilon to pilon.fasta [pilon] Writing NODE_11263_length_273_cov_17.631579:1-273 changes to pilon.changes [pilon] Writing updated NODE_11263_length_273_cov_17.631579_pilon to pilon.fasta [pilon] Writing NODE_11264_length_273_cov_17.144737:1-273 changes to pilon.changes [pilon] Writing updated NODE_11264_length_273_cov_17.144737_pilon to pilon.fasta [pilon] Writing NODE_11265_length_273_cov_16.967105:1-273 changes to pilon.changes [pilon] Writing updated NODE_11265_length_273_cov_16.967105_pilon to pilon.fasta [pilon] Writing NODE_11266_length_273_cov_15.421053:1-273 changes to pilon.changes [pilon] Writing updated NODE_11266_length_273_cov_15.421053_pilon to pilon.fasta [pilon] Writing NODE_11267_length_273_cov_15.013158:1-273 changes to pilon.changes [pilon] Writing updated NODE_11267_length_273_cov_15.013158_pilon to pilon.fasta [pilon] Writing NODE_11268_length_273_cov_14.894737:1-273 changes to pilon.changes [pilon] Writing updated NODE_11268_length_273_cov_14.894737_pilon to pilon.fasta [pilon] Writing NODE_11269_length_273_cov_14.848684:1-273 changes to pilon.changes [pilon] Writing updated NODE_11269_length_273_cov_14.848684_pilon to pilon.fasta [pilon] Writing NODE_11270_length_273_cov_14.559211:1-273 changes to pilon.changes [pilon] Writing updated NODE_11270_length_273_cov_14.559211_pilon to pilon.fasta [pilon] Writing NODE_11271_length_273_cov_13.973684:1-273 changes to pilon.changes [pilon] Writing updated NODE_11271_length_273_cov_13.973684_pilon to pilon.fasta [pilon] Writing NODE_11272_length_273_cov_12.532895:1-273 changes to pilon.changes [pilon] Writing updated NODE_11272_length_273_cov_12.532895_pilon to pilon.fasta [pilon] Writing NODE_11273_length_273_cov_12.434211:1-273 changes to pilon.changes [pilon] Writing updated NODE_11273_length_273_cov_12.434211_pilon to pilon.fasta [pilon] Writing NODE_11274_length_273_cov_12.342105:1-273 changes to pilon.changes [pilon] Writing updated NODE_11274_length_273_cov_12.342105_pilon to pilon.fasta [pilon] Writing NODE_11275_length_273_cov_12.000000:1-273 changes to pilon.changes [pilon] Writing updated NODE_11275_length_273_cov_12.000000_pilon to pilon.fasta [pilon] Writing NODE_11276_length_273_cov_11.967105:1-273 changes to pilon.changes [pilon] Writing updated NODE_11276_length_273_cov_11.967105_pilon to pilon.fasta [pilon] Writing NODE_11277_length_273_cov_11.947368:1-273 changes to pilon.changes [pilon] Writing updated NODE_11277_length_273_cov_11.947368_pilon to pilon.fasta [pilon] Writing NODE_11278_length_273_cov_11.894737:1-273 changes to pilon.changes [pilon] Writing updated NODE_11278_length_273_cov_11.894737_pilon to pilon.fasta [pilon] Writing NODE_11279_length_273_cov_11.848684:1-273 changes to pilon.changes [pilon] Writing updated NODE_11279_length_273_cov_11.848684_pilon to pilon.fasta [pilon] Writing NODE_11280_length_273_cov_11.657895:1-273 changes to pilon.changes [pilon] Writing updated NODE_11280_length_273_cov_11.657895_pilon to pilon.fasta [pilon] Writing NODE_11281_length_273_cov_11.144737:1-273 changes to pilon.changes [pilon] Writing updated NODE_11281_length_273_cov_11.144737_pilon to pilon.fasta [pilon] Writing NODE_11282_length_273_cov_10.769737:1-273 changes to pilon.changes [pilon] Writing updated NODE_11282_length_273_cov_10.769737_pilon to pilon.fasta [pilon] Writing NODE_11283_length_273_cov_9.940789:1-273 changes to pilon.changes [pilon] Writing updated NODE_11283_length_273_cov_9.940789_pilon to pilon.fasta [pilon] Writing NODE_11284_length_273_cov_9.375000:1-273 changes to pilon.changes [pilon] Writing updated NODE_11284_length_273_cov_9.375000_pilon to pilon.fasta [pilon] Writing NODE_11285_length_273_cov_9.078947:1-273 changes to pilon.changes [pilon] Writing updated NODE_11285_length_273_cov_9.078947_pilon to pilon.fasta [pilon] Writing NODE_11286_length_273_cov_8.631579:1-273 changes to pilon.changes [pilon] Writing updated NODE_11286_length_273_cov_8.631579_pilon to pilon.fasta [pilon] Writing NODE_11287_length_273_cov_8.052632:1-273 changes to pilon.changes [pilon] Writing updated NODE_11287_length_273_cov_8.052632_pilon to pilon.fasta [pilon] Writing NODE_11288_length_273_cov_7.986842:1-273 changes to pilon.changes [pilon] Writing updated NODE_11288_length_273_cov_7.986842_pilon to pilon.fasta [pilon] Writing NODE_11289_length_273_cov_7.967105:1-273 changes to pilon.changes [pilon] Writing updated NODE_11289_length_273_cov_7.967105_pilon to pilon.fasta [pilon] Writing NODE_11290_length_273_cov_7.710526:1-273 changes to pilon.changes [pilon] Writing updated NODE_11290_length_273_cov_7.710526_pilon to pilon.fasta [pilon] Writing NODE_11291_length_273_cov_7.026316:1-273 changes to pilon.changes [pilon] Writing updated NODE_11291_length_273_cov_7.026316_pilon to pilon.fasta [pilon] Writing NODE_11292_length_273_cov_6.184211:1-273 changes to pilon.changes [pilon] Writing updated NODE_11292_length_273_cov_6.184211_pilon to pilon.fasta [pilon] Writing NODE_11293_length_273_cov_6.111842:1-273 changes to pilon.changes [pilon] Writing updated NODE_11293_length_273_cov_6.111842_pilon to pilon.fasta [pilon] Writing NODE_11294_length_273_cov_6.092105:1-273 changes to pilon.changes [pilon] Writing updated NODE_11294_length_273_cov_6.092105_pilon to pilon.fasta [pilon] Writing NODE_11295_length_273_cov_5.243421:1-273 changes to pilon.changes [pilon] Writing updated NODE_11295_length_273_cov_5.243421_pilon to pilon.fasta [pilon] Writing NODE_11296_length_273_cov_5.065789:1-273 changes to pilon.changes [pilon] Writing updated NODE_11296_length_273_cov_5.065789_pilon to pilon.fasta [pilon] Writing NODE_11297_length_273_cov_4.690789:1-273 changes to pilon.changes [pilon] Writing updated NODE_11297_length_273_cov_4.690789_pilon to pilon.fasta [pilon] Writing NODE_11298_length_272_cov_23.172185:1-272 changes to pilon.changes [pilon] Writing updated NODE_11298_length_272_cov_23.172185_pilon to pilon.fasta [pilon] Writing NODE_11299_length_272_cov_22.847682:1-272 changes to pilon.changes [pilon] Writing updated NODE_11299_length_272_cov_22.847682_pilon to pilon.fasta [pilon] Writing NODE_11300_length_272_cov_22.317881:1-272 changes to pilon.changes [pilon] Writing updated NODE_11300_length_272_cov_22.317881_pilon to pilon.fasta [pilon] Writing NODE_11301_length_272_cov_21.450331:1-272 changes to pilon.changes [pilon] Writing updated NODE_11301_length_272_cov_21.450331_pilon to pilon.fasta [pilon] Writing NODE_11302_length_272_cov_14.251656:1-272 changes to pilon.changes [pilon] Writing updated NODE_11302_length_272_cov_14.251656_pilon to pilon.fasta [pilon] Writing NODE_11303_length_272_cov_8.774834:1-272 changes to pilon.changes [pilon] Writing updated NODE_11303_length_272_cov_8.774834_pilon to pilon.fasta [pilon] Writing NODE_11304_length_271_cov_21.326667:1-271 changes to pilon.changes [pilon] Writing updated NODE_11304_length_271_cov_21.326667_pilon to pilon.fasta [pilon] Writing NODE_11305_length_271_cov_20.700000:1-271 changes to pilon.changes [pilon] Writing updated NODE_11305_length_271_cov_20.700000_pilon to pilon.fasta [pilon] Writing NODE_11306_length_271_cov_19.853333:1-271 changes to pilon.changes [pilon] Writing updated NODE_11306_length_271_cov_19.853333_pilon to pilon.fasta [pilon] Writing NODE_11307_length_271_cov_19.293333:1-271 changes to pilon.changes [pilon] Writing updated NODE_11307_length_271_cov_19.293333_pilon to pilon.fasta [pilon] Writing NODE_11308_length_271_cov_14.273333:1-271 changes to pilon.changes [pilon] Writing updated NODE_11308_length_271_cov_14.273333_pilon to pilon.fasta [pilon] Writing NODE_11309_length_271_cov_9.226667:1-271 changes to pilon.changes [pilon] Writing updated NODE_11309_length_271_cov_9.226667_pilon to pilon.fasta [pilon] Writing NODE_11310_length_271_cov_8.746667:1-271 changes to pilon.changes [pilon] Writing updated NODE_11310_length_271_cov_8.746667_pilon to pilon.fasta [pilon] Writing NODE_11311_length_271_cov_7.593333:1-271 changes to pilon.changes [pilon] Writing updated NODE_11311_length_271_cov_7.593333_pilon to pilon.fasta [pilon] Writing NODE_11312_length_271_cov_6.073333:1-271 changes to pilon.changes [pilon] Writing updated NODE_11312_length_271_cov_6.073333_pilon to pilon.fasta [pilon] Writing NODE_11313_length_270_cov_36.651007:1-270 changes to pilon.changes [pilon] Writing updated NODE_11313_length_270_cov_36.651007_pilon to pilon.fasta [pilon] Writing NODE_11314_length_270_cov_34.912752:1-270 changes to pilon.changes [pilon] Writing updated NODE_11314_length_270_cov_34.912752_pilon to pilon.fasta [pilon] Writing NODE_11315_length_270_cov_33.295302:1-270 changes to pilon.changes [pilon] Writing updated NODE_11315_length_270_cov_33.295302_pilon to pilon.fasta [pilon] Writing NODE_11316_length_270_cov_32.651007:1-270 changes to pilon.changes [pilon] Writing updated NODE_11316_length_270_cov_32.651007_pilon to pilon.fasta [pilon] Writing NODE_11317_length_270_cov_30.436242:1-270 changes to pilon.changes [pilon] Writing updated NODE_11317_length_270_cov_30.436242_pilon to pilon.fasta [pilon] Writing NODE_11318_length_270_cov_30.288591:1-270 changes to pilon.changes [pilon] Writing updated NODE_11318_length_270_cov_30.288591_pilon to pilon.fasta [pilon] Writing NODE_11319_length_270_cov_29.993289:1-270 changes to pilon.changes [pilon] Writing updated NODE_11319_length_270_cov_29.993289_pilon to pilon.fasta [pilon] Writing NODE_11320_length_270_cov_28.248322:1-270 changes to pilon.changes [pilon] Writing updated NODE_11320_length_270_cov_28.248322_pilon to pilon.fasta [pilon] Writing NODE_11321_length_270_cov_27.436242:1-270 changes to pilon.changes [pilon] Writing updated NODE_11321_length_270_cov_27.436242_pilon to pilon.fasta [pilon] Writing NODE_11322_length_270_cov_26.281879:1-270 changes to pilon.changes [pilon] Writing updated NODE_11322_length_270_cov_26.281879_pilon to pilon.fasta [pilon] Writing NODE_11323_length_270_cov_25.375839:1-270 changes to pilon.changes [pilon] Writing updated NODE_11323_length_270_cov_25.375839_pilon to pilon.fasta [pilon] Writing NODE_11324_length_270_cov_24.550336:1-270 changes to pilon.changes [pilon] Writing updated NODE_11324_length_270_cov_24.550336_pilon to pilon.fasta [pilon] Writing NODE_11325_length_270_cov_23.657718:1-270 changes to pilon.changes [pilon] Writing updated NODE_11325_length_270_cov_23.657718_pilon to pilon.fasta [pilon] Writing NODE_11326_length_270_cov_22.429530:1-270 changes to pilon.changes [pilon] Writing updated NODE_11326_length_270_cov_22.429530_pilon to pilon.fasta [pilon] Writing NODE_11327_length_270_cov_22.093960:1-270 changes to pilon.changes [pilon] Writing updated NODE_11327_length_270_cov_22.093960_pilon to pilon.fasta [pilon] Writing NODE_11328_length_270_cov_21.536913:1-270 changes to pilon.changes [pilon] Writing updated NODE_11328_length_270_cov_21.536913_pilon to pilon.fasta [pilon] Writing NODE_11329_length_270_cov_21.268456:1-270 changes to pilon.changes [pilon] Writing updated NODE_11329_length_270_cov_21.268456_pilon to pilon.fasta [pilon] Writing NODE_11330_length_270_cov_20.805369:1-270 changes to pilon.changes [pilon] Writing updated NODE_11330_length_270_cov_20.805369_pilon to pilon.fasta [pilon] Writing NODE_11331_length_270_cov_20.644295:1-270 changes to pilon.changes [pilon] Writing updated NODE_11331_length_270_cov_20.644295_pilon to pilon.fasta [pilon] Writing NODE_11332_length_270_cov_20.134228:1-270 changes to pilon.changes [pilon] Writing updated NODE_11332_length_270_cov_20.134228_pilon to pilon.fasta [pilon] Writing NODE_11333_length_270_cov_18.818792:1-270 changes to pilon.changes [pilon] Writing updated NODE_11333_length_270_cov_18.818792_pilon to pilon.fasta [pilon] Writing NODE_11334_length_270_cov_18.691275:1-270 changes to pilon.changes [pilon] Writing updated NODE_11334_length_270_cov_18.691275_pilon to pilon.fasta [pilon] Writing NODE_11335_length_270_cov_18.342282:1-270 changes to pilon.changes [pilon] Writing updated NODE_11335_length_270_cov_18.342282_pilon to pilon.fasta [pilon] Writing NODE_11336_length_270_cov_17.932886:1-270 changes to pilon.changes [pilon] Writing updated NODE_11336_length_270_cov_17.932886_pilon to pilon.fasta [pilon] Writing NODE_11337_length_270_cov_17.805369:1-270 changes to pilon.changes [pilon] Writing updated NODE_11337_length_270_cov_17.805369_pilon to pilon.fasta [pilon] Writing NODE_11338_length_270_cov_17.691275:1-270 changes to pilon.changes [pilon] Writing updated NODE_11338_length_270_cov_17.691275_pilon to pilon.fasta [pilon] Writing NODE_11339_length_270_cov_16.771812:1-270 changes to pilon.changes [pilon] Writing updated NODE_11339_length_270_cov_16.771812_pilon to pilon.fasta [pilon] Writing NODE_11340_length_270_cov_16.744966:1-270 changes to pilon.changes [pilon] Writing updated NODE_11340_length_270_cov_16.744966_pilon to pilon.fasta [pilon] Writing NODE_11341_length_270_cov_16.597315:1-270 changes to pilon.changes [pilon] Writing updated NODE_11341_length_270_cov_16.597315_pilon to pilon.fasta [pilon] Writing NODE_11342_length_270_cov_16.342282:1-270 changes to pilon.changes [pilon] Writing updated NODE_11342_length_270_cov_16.342282_pilon to pilon.fasta [pilon] Writing NODE_11343_length_270_cov_16.308725:1-270 changes to pilon.changes [pilon] Writing updated NODE_11343_length_270_cov_16.308725_pilon to pilon.fasta [pilon] Writing NODE_11344_length_270_cov_16.275168:1-270 changes to pilon.changes [pilon] Writing updated NODE_11344_length_270_cov_16.275168_pilon to pilon.fasta [pilon] Writing NODE_11345_length_270_cov_16.046980:1-270 changes to pilon.changes [pilon] Writing updated NODE_11345_length_270_cov_16.046980_pilon to pilon.fasta [pilon] Writing NODE_11346_length_270_cov_15.906040:1-270 changes to pilon.changes [pilon] Writing updated NODE_11346_length_270_cov_15.906040_pilon to pilon.fasta [pilon] Writing NODE_11347_length_270_cov_15.523490:1-270 changes to pilon.changes [pilon] Writing updated NODE_11347_length_270_cov_15.523490_pilon to pilon.fasta [pilon] Writing NODE_11348_length_270_cov_15.442953:1-270 changes to pilon.changes [pilon] Writing updated NODE_11348_length_270_cov_15.442953_pilon to pilon.fasta [pilon] Writing NODE_11349_length_270_cov_15.348993:1-270 changes to pilon.changes [pilon] Writing updated NODE_11349_length_270_cov_15.348993_pilon to pilon.fasta [pilon] Writing NODE_11350_length_270_cov_15.181208:1-270 changes to pilon.changes [pilon] Writing updated NODE_11350_length_270_cov_15.181208_pilon to pilon.fasta [pilon] Writing NODE_11351_length_270_cov_13.872483:1-270 changes to pilon.changes [pilon] Writing updated NODE_11351_length_270_cov_13.872483_pilon to pilon.fasta [pilon] Writing NODE_11352_length_270_cov_12.053691:1-270 changes to pilon.changes [pilon] Writing updated NODE_11352_length_270_cov_12.053691_pilon to pilon.fasta [pilon] Writing NODE_11353_length_270_cov_10.429530:1-270 changes to pilon.changes [pilon] Writing updated NODE_11353_length_270_cov_10.429530_pilon to pilon.fasta [pilon] Writing NODE_11354_length_270_cov_9.630872:1-270 changes to pilon.changes [pilon] Writing updated NODE_11354_length_270_cov_9.630872_pilon to pilon.fasta [pilon] Writing NODE_11355_length_270_cov_9.201342:1-270 changes to pilon.changes [pilon] Writing updated NODE_11355_length_270_cov_9.201342_pilon to pilon.fasta [pilon] Writing NODE_11356_length_270_cov_9.033557:1-270 changes to pilon.changes [pilon] Writing updated NODE_11356_length_270_cov_9.033557_pilon to pilon.fasta [pilon] Writing NODE_11357_length_270_cov_8.785235:1-270 changes to pilon.changes [pilon] Writing updated NODE_11357_length_270_cov_8.785235_pilon to pilon.fasta [pilon] Writing NODE_11358_length_270_cov_8.208054:1-270 changes to pilon.changes [pilon] Writing updated NODE_11358_length_270_cov_8.208054_pilon to pilon.fasta [pilon] Writing NODE_11359_length_270_cov_7.912752:1-270 changes to pilon.changes [pilon] Writing updated NODE_11359_length_270_cov_7.912752_pilon to pilon.fasta [pilon] Writing NODE_11360_length_270_cov_7.624161:1-270 changes to pilon.changes [pilon] Writing updated NODE_11360_length_270_cov_7.624161_pilon to pilon.fasta [pilon] Writing NODE_11361_length_270_cov_5.295302:1-270 changes to pilon.changes [pilon] Writing updated NODE_11361_length_270_cov_5.295302_pilon to pilon.fasta [pilon] Writing NODE_11362_length_270_cov_5.154362:1-270 changes to pilon.changes [pilon] Writing updated NODE_11362_length_270_cov_5.154362_pilon to pilon.fasta [pilon] Writing NODE_11363_length_269_cov_19.412162:1-269 changes to pilon.changes [pilon] Writing updated NODE_11363_length_269_cov_19.412162_pilon to pilon.fasta [pilon] Writing NODE_11364_length_269_cov_15.391892:1-269 changes to pilon.changes [pilon] Writing updated NODE_11364_length_269_cov_15.391892_pilon to pilon.fasta [pilon] Writing NODE_11365_length_269_cov_12.601351:1-269 changes to pilon.changes [pilon] Writing updated NODE_11365_length_269_cov_12.601351_pilon to pilon.fasta [pilon] Writing NODE_11366_length_269_cov_9.716216:1-269 changes to pilon.changes [pilon] Writing updated NODE_11366_length_269_cov_9.716216_pilon to pilon.fasta [pilon] Writing NODE_11367_length_269_cov_9.094595:1-269 changes to pilon.changes [pilon] Writing updated NODE_11367_length_269_cov_9.094595_pilon to pilon.fasta [pilon] Writing NODE_11368_length_269_cov_7.932432:1-269 changes to pilon.changes [pilon] Writing updated NODE_11368_length_269_cov_7.932432_pilon to pilon.fasta [pilon] Writing NODE_11369_length_269_cov_7.155405:1-269 changes to pilon.changes [pilon] Writing updated NODE_11369_length_269_cov_7.155405_pilon to pilon.fasta [pilon] Writing NODE_11370_length_269_cov_6.398649:1-269 changes to pilon.changes [pilon] Writing updated NODE_11370_length_269_cov_6.398649_pilon to pilon.fasta [pilon] Writing NODE_11371_length_269_cov_6.324324:1-269 changes to pilon.changes [pilon] Writing updated NODE_11371_length_269_cov_6.324324_pilon to pilon.fasta [pilon] Writing NODE_11372_length_269_cov_5.614865:1-269 changes to pilon.changes [pilon] Writing updated NODE_11372_length_269_cov_5.614865_pilon to pilon.fasta [pilon] Writing NODE_11373_length_268_cov_33.299320:1-268 changes to pilon.changes [pilon] Writing updated NODE_11373_length_268_cov_33.299320_pilon to pilon.fasta [pilon] Writing NODE_11374_length_268_cov_21.231293:1-268 changes to pilon.changes [pilon] Writing updated NODE_11374_length_268_cov_21.231293_pilon to pilon.fasta [pilon] Writing NODE_11375_length_268_cov_17.544218:1-268 changes to pilon.changes [pilon] Writing updated NODE_11375_length_268_cov_17.544218_pilon to pilon.fasta [pilon] Writing NODE_11376_length_268_cov_17.197279:1-268 changes to pilon.changes [pilon] Writing updated NODE_11376_length_268_cov_17.197279_pilon to pilon.fasta [pilon] Writing NODE_11377_length_268_cov_15.020408:1-268 changes to pilon.changes [pilon] Writing updated NODE_11377_length_268_cov_15.020408_pilon to pilon.fasta [pilon] Writing NODE_11378_length_268_cov_9.857143:1-268 changes to pilon.changes [pilon] Writing updated NODE_11378_length_268_cov_9.857143_pilon to pilon.fasta [pilon] Writing NODE_11379_length_268_cov_9.108844:1-268 changes to pilon.changes [pilon] Writing updated NODE_11379_length_268_cov_9.108844_pilon to pilon.fasta [pilon] Writing NODE_11380_length_268_cov_7.210884:1-268 changes to pilon.changes [pilon] Writing updated NODE_11380_length_268_cov_7.210884_pilon to pilon.fasta [pilon] Writing NODE_11381_length_268_cov_6.877551:1-268 changes to pilon.changes [pilon] Writing updated NODE_11381_length_268_cov_6.877551_pilon to pilon.fasta [pilon] Writing NODE_11382_length_268_cov_5.340136:1-268 changes to pilon.changes [pilon] Writing updated NODE_11382_length_268_cov_5.340136_pilon to pilon.fasta [pilon] Writing NODE_11383_length_267_cov_41.417808:1-267 changes to pilon.changes [pilon] Writing updated NODE_11383_length_267_cov_41.417808_pilon to pilon.fasta [pilon] Writing NODE_11384_length_267_cov_37.890411:1-267 changes to pilon.changes [pilon] Writing updated NODE_11384_length_267_cov_37.890411_pilon to pilon.fasta [pilon] Writing NODE_11385_length_267_cov_36.082192:1-267 changes to pilon.changes [pilon] Writing updated NODE_11385_length_267_cov_36.082192_pilon to pilon.fasta [pilon] Writing NODE_11386_length_267_cov_34.383562:1-267 changes to pilon.changes [pilon] Writing updated NODE_11386_length_267_cov_34.383562_pilon to pilon.fasta [pilon] Writing NODE_11387_length_267_cov_30.609589:1-267 changes to pilon.changes [pilon] Writing updated NODE_11387_length_267_cov_30.609589_pilon to pilon.fasta [pilon] Writing NODE_11388_length_267_cov_28.089041:1-267 changes to pilon.changes [pilon] Writing updated NODE_11388_length_267_cov_28.089041_pilon to pilon.fasta [pilon] Writing NODE_11389_length_267_cov_27.130137:1-267 changes to pilon.changes [pilon] Writing updated NODE_11389_length_267_cov_27.130137_pilon to pilon.fasta [pilon] Writing NODE_11390_length_267_cov_26.458904:1-267 changes to pilon.changes [pilon] Writing updated NODE_11390_length_267_cov_26.458904_pilon to pilon.fasta [pilon] Writing NODE_11391_length_267_cov_25.041096:1-267 changes to pilon.changes [pilon] Writing updated NODE_11391_length_267_cov_25.041096_pilon to pilon.fasta [pilon] Writing NODE_11392_length_267_cov_24.780822:1-267 changes to pilon.changes [pilon] Writing updated NODE_11392_length_267_cov_24.780822_pilon to pilon.fasta [pilon] Writing NODE_11393_length_267_cov_22.952055:1-267 changes to pilon.changes [pilon] Writing updated NODE_11393_length_267_cov_22.952055_pilon to pilon.fasta [pilon] Writing NODE_11394_length_267_cov_22.184932:1-267 changes to pilon.changes [pilon] Writing updated NODE_11394_length_267_cov_22.184932_pilon to pilon.fasta [pilon] Writing NODE_11395_length_267_cov_21.869863:1-267 changes to pilon.changes [pilon] Writing updated NODE_11395_length_267_cov_21.869863_pilon to pilon.fasta [pilon] Writing NODE_11396_length_267_cov_20.554795:1-267 changes to pilon.changes [pilon] Writing updated NODE_11396_length_267_cov_20.554795_pilon to pilon.fasta [pilon] Writing NODE_11397_length_267_cov_20.226027:1-267 changes to pilon.changes [pilon] Writing updated NODE_11397_length_267_cov_20.226027_pilon to pilon.fasta [pilon] Writing NODE_11398_length_267_cov_19.972603:1-267 changes to pilon.changes [pilon] Writing updated NODE_11398_length_267_cov_19.972603_pilon to pilon.fasta [pilon] Writing NODE_11399_length_267_cov_19.589041:1-267 changes to pilon.changes [pilon] Writing updated NODE_11399_length_267_cov_19.589041_pilon to pilon.fasta [pilon] Writing NODE_11400_length_267_cov_19.424658:1-267 changes to pilon.changes [pilon] Writing updated NODE_11400_length_267_cov_19.424658_pilon to pilon.fasta [pilon] Writing NODE_11401_length_267_cov_18.561644:1-267 changes to pilon.changes [pilon] Writing updated NODE_11401_length_267_cov_18.561644_pilon to pilon.fasta [pilon] Writing NODE_11402_length_267_cov_18.410959:1-267 changes to pilon.changes [pilon] Writing updated NODE_11402_length_267_cov_18.410959_pilon to pilon.fasta [pilon] Writing NODE_11403_length_267_cov_18.006849:1-267 changes to pilon.changes [pilon] Writing updated NODE_11403_length_267_cov_18.006849_pilon to pilon.fasta [pilon] Writing NODE_11404_length_267_cov_17.335616:1-267 changes to pilon.changes [pilon] Writing updated NODE_11404_length_267_cov_17.335616_pilon to pilon.fasta [pilon] Writing NODE_11405_length_267_cov_17.246575:1-267 changes to pilon.changes [pilon] Writing updated NODE_11405_length_267_cov_17.246575_pilon to pilon.fasta [pilon] Writing NODE_11406_length_267_cov_16.986301:1-267 changes to pilon.changes [pilon] Writing updated NODE_11406_length_267_cov_16.986301_pilon to pilon.fasta [pilon] Writing NODE_11407_length_267_cov_16.753425:1-267 changes to pilon.changes [pilon] Writing updated NODE_11407_length_267_cov_16.753425_pilon to pilon.fasta [pilon] Writing NODE_11408_length_267_cov_16.349315:1-267 changes to pilon.changes [pilon] Writing updated NODE_11408_length_267_cov_16.349315_pilon to pilon.fasta [pilon] Writing NODE_11409_length_267_cov_16.349315:1-267 changes to pilon.changes [pilon] Writing updated NODE_11409_length_267_cov_16.349315_pilon to pilon.fasta [pilon] Writing NODE_11410_length_267_cov_16.020548:1-267 changes to pilon.changes [pilon] Writing updated NODE_11410_length_267_cov_16.020548_pilon to pilon.fasta [pilon] Writing NODE_11411_length_267_cov_15.171233:1-267 changes to pilon.changes [pilon] Writing updated NODE_11411_length_267_cov_15.171233_pilon to pilon.fasta [pilon] Writing NODE_11412_length_267_cov_15.157534:1-267 changes to pilon.changes [pilon] Writing updated NODE_11412_length_267_cov_15.157534_pilon to pilon.fasta [pilon] Writing NODE_11413_length_267_cov_15.041096:1-267 changes to pilon.changes [pilon] Writing updated NODE_11413_length_267_cov_15.041096_pilon to pilon.fasta [pilon] Writing NODE_11414_length_267_cov_14.993151:1-267 changes to pilon.changes [pilon] Writing updated NODE_11414_length_267_cov_14.993151_pilon to pilon.fasta [pilon] Writing NODE_11415_length_267_cov_14.732877:1-267 changes to pilon.changes [pilon] Writing updated NODE_11415_length_267_cov_14.732877_pilon to pilon.fasta [pilon] Writing NODE_11416_length_267_cov_14.726027:1-267 changes to pilon.changes [pilon] Writing updated NODE_11416_length_267_cov_14.726027_pilon to pilon.fasta [pilon] Writing NODE_11417_length_267_cov_13.924658:1-267 changes to pilon.changes [pilon] Writing updated NODE_11417_length_267_cov_13.924658_pilon to pilon.fasta [pilon] Writing NODE_11418_length_267_cov_12.109589:1-267 changes to pilon.changes [pilon] Writing updated NODE_11418_length_267_cov_12.109589_pilon to pilon.fasta [pilon] Writing NODE_11419_length_267_cov_11.431507:1-267 changes to pilon.changes [pilon] Writing updated NODE_11419_length_267_cov_11.431507_pilon to pilon.fasta [pilon] Writing NODE_11420_length_267_cov_11.027397:1-267 changes to pilon.changes [pilon] Writing updated NODE_11420_length_267_cov_11.027397_pilon to pilon.fasta [pilon] Writing NODE_11421_length_267_cov_10.965753:1-267 changes to pilon.changes [pilon] Writing updated NODE_11421_length_267_cov_10.965753_pilon to pilon.fasta [pilon] Writing NODE_11422_length_267_cov_9.671233:1-267 changes to pilon.changes [pilon] Writing updated NODE_11422_length_267_cov_9.671233_pilon to pilon.fasta [pilon] Writing NODE_11423_length_267_cov_9.431507:1-267 changes to pilon.changes [pilon] Writing updated NODE_11423_length_267_cov_9.431507_pilon to pilon.fasta [pilon] Writing NODE_11424_length_267_cov_9.410959:1-267 changes to pilon.changes [pilon] Writing updated NODE_11424_length_267_cov_9.410959_pilon to pilon.fasta [pilon] Writing NODE_11425_length_267_cov_8.849315:1-267 changes to pilon.changes [pilon] Writing updated NODE_11425_length_267_cov_8.849315_pilon to pilon.fasta [pilon] Writing NODE_11426_length_267_cov_8.356164:1-267 changes to pilon.changes [pilon] Writing updated NODE_11426_length_267_cov_8.356164_pilon to pilon.fasta [pilon] Writing NODE_11427_length_267_cov_8.095890:1-267 changes to pilon.changes [pilon] Writing updated NODE_11427_length_267_cov_8.095890_pilon to pilon.fasta [pilon] Writing NODE_11428_length_267_cov_6.342466:1-267 changes to pilon.changes [pilon] Writing updated NODE_11428_length_267_cov_6.342466_pilon to pilon.fasta [pilon] Writing NODE_11429_length_267_cov_5.897260:1-267 changes to pilon.changes [pilon] Writing updated NODE_11429_length_267_cov_5.897260_pilon to pilon.fasta [pilon] Writing NODE_11430_length_267_cov_5.746575:1-267 changes to pilon.changes [pilon] Writing updated NODE_11430_length_267_cov_5.746575_pilon to pilon.fasta [pilon] Writing NODE_11431_length_267_cov_5.732877:1-267 changes to pilon.changes [pilon] Writing updated NODE_11431_length_267_cov_5.732877_pilon to pilon.fasta [pilon] Writing NODE_11432_length_267_cov_5.684932:1-267 changes to pilon.changes [pilon] Writing updated NODE_11432_length_267_cov_5.684932_pilon to pilon.fasta [pilon] Writing NODE_11433_length_266_cov_24.606897:1-266 changes to pilon.changes [pilon] Writing updated NODE_11433_length_266_cov_24.606897_pilon to pilon.fasta [pilon] Writing NODE_11434_length_266_cov_23.744828:1-266 changes to pilon.changes [pilon] Writing updated NODE_11434_length_266_cov_23.744828_pilon to pilon.fasta [pilon] Writing NODE_11435_length_266_cov_15.765517:1-266 changes to pilon.changes [pilon] Writing updated NODE_11435_length_266_cov_15.765517_pilon to pilon.fasta [pilon] Writing NODE_11436_length_266_cov_15.662069:1-266 changes to pilon.changes [pilon] Writing updated NODE_11436_length_266_cov_15.662069_pilon to pilon.fasta [pilon] Writing NODE_11437_length_266_cov_15.434483:1-266 changes to pilon.changes [pilon] Writing updated NODE_11437_length_266_cov_15.434483_pilon to pilon.fasta [pilon] Writing NODE_11438_length_266_cov_14.234483:1-266 changes to pilon.changes [pilon] Writing updated NODE_11438_length_266_cov_14.234483_pilon to pilon.fasta [pilon] Writing NODE_11439_length_266_cov_10.958621:1-266 changes to pilon.changes [pilon] Writing updated NODE_11439_length_266_cov_10.958621_pilon to pilon.fasta [pilon] Writing NODE_11440_length_266_cov_10.593103:1-266 changes to pilon.changes [pilon] Writing updated NODE_11440_length_266_cov_10.593103_pilon to pilon.fasta [pilon] Writing NODE_11441_length_266_cov_10.282759:1-266 changes to pilon.changes [pilon] Writing updated NODE_11441_length_266_cov_10.282759_pilon to pilon.fasta [pilon] Writing NODE_11442_length_265_cov_32.743056:1-265 changes to pilon.changes [pilon] Writing updated NODE_11442_length_265_cov_32.743056_pilon to pilon.fasta [pilon] Writing NODE_11443_length_265_cov_24.798611:1-265 changes to pilon.changes [pilon] Writing updated NODE_11443_length_265_cov_24.798611_pilon to pilon.fasta [pilon] Writing NODE_11444_length_265_cov_24.097222:1-265 changes to pilon.changes [pilon] Writing updated NODE_11444_length_265_cov_24.097222_pilon to pilon.fasta [pilon] Writing NODE_11445_length_265_cov_14.152778:1-265 changes to pilon.changes [pilon] Writing updated NODE_11445_length_265_cov_14.152778_pilon to pilon.fasta [pilon] Writing NODE_11446_length_265_cov_12.847222:1-265 changes to pilon.changes [pilon] Writing updated NODE_11446_length_265_cov_12.847222_pilon to pilon.fasta [pilon] Writing NODE_11447_length_265_cov_11.597222:1-265 changes to pilon.changes [pilon] Writing updated NODE_11447_length_265_cov_11.597222_pilon to pilon.fasta [pilon] Writing NODE_11448_length_265_cov_11.298611:1-265 changes to pilon.changes [pilon] Writing updated NODE_11448_length_265_cov_11.298611_pilon to pilon.fasta [pilon] Writing NODE_11449_length_265_cov_9.430556:1-265 changes to pilon.changes [pilon] Writing updated NODE_11449_length_265_cov_9.430556_pilon to pilon.fasta [pilon] Writing NODE_11450_length_265_cov_9.291667:1-265 changes to pilon.changes [pilon] Writing updated NODE_11450_length_265_cov_9.291667_pilon to pilon.fasta [pilon] Writing NODE_11451_length_265_cov_6.534722:1-265 changes to pilon.changes [pilon] Writing updated NODE_11451_length_265_cov_6.534722_pilon to pilon.fasta [pilon] Writing NODE_11452_length_265_cov_6.034722:1-265 changes to pilon.changes [pilon] Writing updated NODE_11452_length_265_cov_6.034722_pilon to pilon.fasta [pilon] Writing NODE_11453_length_265_cov_1.104167:1-265 changes to pilon.changes [pilon] Writing updated NODE_11453_length_265_cov_1.104167_pilon to pilon.fasta [pilon] Writing NODE_11454_length_264_cov_33.566434:1-264 changes to pilon.changes [pilon] Writing updated NODE_11454_length_264_cov_33.566434_pilon to pilon.fasta [pilon] Writing NODE_11455_length_264_cov_30.944056:1-264 changes to pilon.changes [pilon] Writing updated NODE_11455_length_264_cov_30.944056_pilon to pilon.fasta [pilon] Writing NODE_11456_length_264_cov_28.391608:1-264 changes to pilon.changes [pilon] Writing updated NODE_11456_length_264_cov_28.391608_pilon to pilon.fasta [pilon] Writing NODE_11457_length_264_cov_27.930070:1-264 changes to pilon.changes [pilon] Writing updated NODE_11457_length_264_cov_27.930070_pilon to pilon.fasta [pilon] Writing NODE_11458_length_264_cov_27.405594:1-264 changes to pilon.changes [pilon] Writing updated NODE_11458_length_264_cov_27.405594_pilon to pilon.fasta [pilon] Writing NODE_11459_length_264_cov_26.860140:1-264 changes to pilon.changes [pilon] Writing updated NODE_11459_length_264_cov_26.860140_pilon to pilon.fasta [pilon] Writing NODE_11460_length_264_cov_26.685315:1-264 changes to pilon.changes [pilon] Writing updated NODE_11460_length_264_cov_26.685315_pilon to pilon.fasta [pilon] Writing NODE_11461_length_264_cov_25.069930:1-264 changes to pilon.changes [pilon] Writing updated NODE_11461_length_264_cov_25.069930_pilon to pilon.fasta [pilon] Writing NODE_11462_length_264_cov_25.006993:1-264 changes to pilon.changes [pilon] Writing updated NODE_11462_length_264_cov_25.006993_pilon to pilon.fasta [pilon] Writing NODE_11463_length_264_cov_24.979021:1-264 changes to pilon.changes [pilon] Writing updated NODE_11463_length_264_cov_24.979021_pilon to pilon.fasta [pilon] Writing NODE_11464_length_264_cov_24.825175:1-264 changes to pilon.changes [pilon] Writing updated NODE_11464_length_264_cov_24.825175_pilon to pilon.fasta [pilon] Writing NODE_11465_length_264_cov_22.790210:1-264 changes to pilon.changes [pilon] Writing updated NODE_11465_length_264_cov_22.790210_pilon to pilon.fasta [pilon] Writing NODE_11466_length_264_cov_22.608392:1-264 changes to pilon.changes [pilon] Writing updated NODE_11466_length_264_cov_22.608392_pilon to pilon.fasta [pilon] Writing NODE_11467_length_264_cov_22.398601:1-264 changes to pilon.changes [pilon] Writing updated NODE_11467_length_264_cov_22.398601_pilon to pilon.fasta [pilon] Writing NODE_11468_length_264_cov_22.160839:1-264 changes to pilon.changes [pilon] Writing updated NODE_11468_length_264_cov_22.160839_pilon to pilon.fasta [pilon] Writing NODE_11469_length_264_cov_20.874126:1-264 changes to pilon.changes [pilon] Writing updated NODE_11469_length_264_cov_20.874126_pilon to pilon.fasta [pilon] Writing NODE_11470_length_264_cov_20.692308:1-264 changes to pilon.changes [pilon] Writing updated NODE_11470_length_264_cov_20.692308_pilon to pilon.fasta [pilon] Writing NODE_11471_length_264_cov_19.986014:1-264 changes to pilon.changes [pilon] Writing updated NODE_11471_length_264_cov_19.986014_pilon to pilon.fasta [pilon] Writing NODE_11472_length_264_cov_19.104895:1-264 changes to pilon.changes [pilon] Writing updated NODE_11472_length_264_cov_19.104895_pilon to pilon.fasta [pilon] Writing NODE_11473_length_264_cov_18.643357:1-264 changes to pilon.changes [pilon] Writing updated NODE_11473_length_264_cov_18.643357_pilon to pilon.fasta [pilon] Writing NODE_11474_length_264_cov_18.461538:1-264 changes to pilon.changes [pilon] Writing updated NODE_11474_length_264_cov_18.461538_pilon to pilon.fasta [pilon] Writing NODE_11475_length_264_cov_18.000000:1-264 changes to pilon.changes [pilon] Writing updated NODE_11475_length_264_cov_18.000000_pilon to pilon.fasta [pilon] Writing NODE_11476_length_264_cov_17.818182:1-264 changes to pilon.changes [pilon] Writing updated NODE_11476_length_264_cov_17.818182_pilon to pilon.fasta [pilon] Writing NODE_11477_length_264_cov_17.069930:1-264 changes to pilon.changes [pilon] Writing updated NODE_11477_length_264_cov_17.069930_pilon to pilon.fasta [pilon] Writing NODE_11478_length_264_cov_16.895105:1-264 changes to pilon.changes [pilon] Writing updated NODE_11478_length_264_cov_16.895105_pilon to pilon.fasta [pilon] Writing NODE_11479_length_264_cov_16.622378:1-264 changes to pilon.changes [pilon] Writing updated NODE_11479_length_264_cov_16.622378_pilon to pilon.fasta [pilon] Writing NODE_11480_length_264_cov_16.580420:1-264 changes to pilon.changes [pilon] Writing updated NODE_11480_length_264_cov_16.580420_pilon to pilon.fasta [pilon] Writing NODE_11481_length_264_cov_16.083916:1-264 changes to pilon.changes [pilon] Writing updated NODE_11481_length_264_cov_16.083916_pilon to pilon.fasta [pilon] Writing NODE_11482_length_264_cov_15.699301:1-264 changes to pilon.changes [pilon] Writing updated NODE_11482_length_264_cov_15.699301_pilon to pilon.fasta [pilon] Writing NODE_11483_length_264_cov_15.524476:1-264 changes to pilon.changes [pilon] Writing updated NODE_11483_length_264_cov_15.524476_pilon to pilon.fasta [pilon] Writing NODE_11484_length_264_cov_15.496503:1-264 changes to pilon.changes [pilon] Writing updated NODE_11484_length_264_cov_15.496503_pilon to pilon.fasta [pilon] Writing NODE_11485_length_264_cov_15.160839:1-264 changes to pilon.changes [pilon] Writing updated NODE_11485_length_264_cov_15.160839_pilon to pilon.fasta [pilon] Writing NODE_11486_length_264_cov_15.125874:1-264 changes to pilon.changes [pilon] Writing updated NODE_11486_length_264_cov_15.125874_pilon to pilon.fasta [pilon] Writing NODE_11487_length_264_cov_14.608392:1-264 changes to pilon.changes [pilon] Writing updated NODE_11487_length_264_cov_14.608392_pilon to pilon.fasta [pilon] Writing NODE_11488_length_264_cov_14.377622:1-264 changes to pilon.changes [pilon] Writing updated NODE_11488_length_264_cov_14.377622_pilon to pilon.fasta [pilon] Writing NODE_11489_length_264_cov_14.328671:1-264 changes to pilon.changes [pilon] Writing updated NODE_11489_length_264_cov_14.328671_pilon to pilon.fasta [pilon] Writing NODE_11490_length_264_cov_13.867133:1-264 changes to pilon.changes [pilon] Writing updated NODE_11490_length_264_cov_13.867133_pilon to pilon.fasta [pilon] Writing NODE_11491_length_264_cov_13.300699:1-264 changes to pilon.changes [pilon] Writing updated NODE_11491_length_264_cov_13.300699_pilon to pilon.fasta [pilon] Writing NODE_11492_length_264_cov_11.923077:1-264 changes to pilon.changes [pilon] Writing updated NODE_11492_length_264_cov_11.923077_pilon to pilon.fasta [pilon] Writing NODE_11493_length_264_cov_10.090909:1-264 changes to pilon.changes [pilon] Writing updated NODE_11493_length_264_cov_10.090909_pilon to pilon.fasta [pilon] Writing NODE_11494_length_264_cov_8.916084:1-264 changes to pilon.changes [pilon] Writing updated NODE_11494_length_264_cov_8.916084_pilon to pilon.fasta [pilon] Writing NODE_11495_length_264_cov_8.846154:1-264 changes to pilon.changes [pilon] Writing updated NODE_11495_length_264_cov_8.846154_pilon to pilon.fasta [pilon] Writing NODE_11496_length_264_cov_8.699301:1-264 changes to pilon.changes [pilon] Writing updated NODE_11496_length_264_cov_8.699301_pilon to pilon.fasta [pilon] Writing NODE_11497_length_264_cov_8.321678:1-264 changes to pilon.changes [pilon] Writing updated NODE_11497_length_264_cov_8.321678_pilon to pilon.fasta [pilon] Writing NODE_11498_length_264_cov_7.965035:1-264 changes to pilon.changes [pilon] Writing updated NODE_11498_length_264_cov_7.965035_pilon to pilon.fasta [pilon] Writing NODE_11499_length_264_cov_7.328671:1-264 changes to pilon.changes [pilon] Writing updated NODE_11499_length_264_cov_7.328671_pilon to pilon.fasta [pilon] Writing NODE_11500_length_264_cov_6.979021:1-264 changes to pilon.changes [pilon] Writing updated NODE_11500_length_264_cov_6.979021_pilon to pilon.fasta [pilon] Writing NODE_11501_length_264_cov_6.629371:1-264 changes to pilon.changes [pilon] Writing updated NODE_11501_length_264_cov_6.629371_pilon to pilon.fasta [pilon] Writing NODE_11502_length_264_cov_6.181818:1-264 changes to pilon.changes [pilon] Writing updated NODE_11502_length_264_cov_6.181818_pilon to pilon.fasta [pilon] Writing NODE_11503_length_264_cov_6.083916:1-264 changes to pilon.changes [pilon] Writing updated NODE_11503_length_264_cov_6.083916_pilon to pilon.fasta [pilon] Writing NODE_11504_length_264_cov_5.972028:1-264 changes to pilon.changes [pilon] Writing updated NODE_11504_length_264_cov_5.972028_pilon to pilon.fasta [pilon] Writing NODE_11505_length_264_cov_5.314685:1-264 changes to pilon.changes [pilon] Writing updated NODE_11505_length_264_cov_5.314685_pilon to pilon.fasta [pilon] Writing NODE_11506_length_263_cov_65.000000:1-263 changes to pilon.changes [pilon] Writing updated NODE_11506_length_263_cov_65.000000_pilon to pilon.fasta [pilon] Writing NODE_11507_length_263_cov_38.704225:1-263 changes to pilon.changes [pilon] Writing updated NODE_11507_length_263_cov_38.704225_pilon to pilon.fasta [pilon] Writing NODE_11508_length_263_cov_32.528169:1-263 changes to pilon.changes [pilon] Writing updated NODE_11508_length_263_cov_32.528169_pilon to pilon.fasta [pilon] Writing NODE_11509_length_263_cov_29.161972:1-263 changes to pilon.changes [pilon] Writing updated NODE_11509_length_263_cov_29.161972_pilon to pilon.fasta [pilon] Writing NODE_11510_length_263_cov_26.894366:1-263 changes to pilon.changes [pilon] Writing updated NODE_11510_length_263_cov_26.894366_pilon to pilon.fasta [pilon] Writing NODE_11511_length_263_cov_26.000000:1-263 changes to pilon.changes [pilon] Writing updated NODE_11511_length_263_cov_26.000000_pilon to pilon.fasta [pilon] Writing NODE_11512_length_263_cov_23.852113:1-263 changes to pilon.changes [pilon] Writing updated NODE_11512_length_263_cov_23.852113_pilon to pilon.fasta [pilon] Writing NODE_11513_length_263_cov_23.619718:1-263 changes to pilon.changes [pilon] Writing updated NODE_11513_length_263_cov_23.619718_pilon to pilon.fasta [pilon] Writing NODE_11514_length_263_cov_23.070423:1-263 changes to pilon.changes [pilon] Writing updated NODE_11514_length_263_cov_23.070423_pilon to pilon.fasta [pilon] Writing NODE_11515_length_263_cov_21.471831:1-263 changes to pilon.changes [pilon] Writing updated NODE_11515_length_263_cov_21.471831_pilon to pilon.fasta [pilon] Writing NODE_11516_length_263_cov_19.760563:1-263 changes to pilon.changes [pilon] Writing updated NODE_11516_length_263_cov_19.760563_pilon to pilon.fasta [pilon] Writing NODE_11517_length_263_cov_19.021127:1-263 changes to pilon.changes [pilon] Writing updated NODE_11517_length_263_cov_19.021127_pilon to pilon.fasta [pilon] Writing NODE_11518_length_263_cov_16.739437:1-263 changes to pilon.changes [pilon] Writing updated NODE_11518_length_263_cov_16.739437_pilon to pilon.fasta [pilon] Writing NODE_11519_length_263_cov_16.105634:1-263 changes to pilon.changes [pilon] Writing updated NODE_11519_length_263_cov_16.105634_pilon to pilon.fasta [pilon] Writing NODE_11520_length_263_cov_15.267606:1-263 changes to pilon.changes [pilon] Writing updated NODE_11520_length_263_cov_15.267606_pilon to pilon.fasta [pilon] Writing NODE_11521_length_263_cov_14.429577:1-263 changes to pilon.changes [pilon] Writing updated NODE_11521_length_263_cov_14.429577_pilon to pilon.fasta [pilon] Writing NODE_11522_length_263_cov_14.197183:1-263 changes to pilon.changes [pilon] Writing updated NODE_11522_length_263_cov_14.197183_pilon to pilon.fasta [pilon] Writing NODE_11523_length_263_cov_14.126761:1-263 changes to pilon.changes [pilon] Writing updated NODE_11523_length_263_cov_14.126761_pilon to pilon.fasta [pilon] Writing NODE_11524_length_263_cov_11.838028:1-263 changes to pilon.changes [pilon] Writing updated NODE_11524_length_263_cov_11.838028_pilon to pilon.fasta [pilon] Writing NODE_11525_length_263_cov_11.619718:1-263 changes to pilon.changes [pilon] Writing updated NODE_11525_length_263_cov_11.619718_pilon to pilon.fasta [pilon] Writing NODE_11526_length_263_cov_9.971831:1-263 changes to pilon.changes [pilon] Writing updated NODE_11526_length_263_cov_9.971831_pilon to pilon.fasta [pilon] Writing NODE_11527_length_263_cov_9.105634:1-263 changes to pilon.changes [pilon] Writing updated NODE_11527_length_263_cov_9.105634_pilon to pilon.fasta [pilon] Writing NODE_11528_length_263_cov_9.042254:1-263 changes to pilon.changes [pilon] Writing updated NODE_11528_length_263_cov_9.042254_pilon to pilon.fasta [pilon] Writing NODE_11529_length_263_cov_8.140845:1-263 changes to pilon.changes [pilon] Writing updated NODE_11529_length_263_cov_8.140845_pilon to pilon.fasta [pilon] Writing NODE_11530_length_263_cov_7.992958:1-263 changes to pilon.changes [pilon] Writing updated NODE_11530_length_263_cov_7.992958_pilon to pilon.fasta [pilon] Writing NODE_11531_length_263_cov_6.457746:1-263 changes to pilon.changes [pilon] Writing updated NODE_11531_length_263_cov_6.457746_pilon to pilon.fasta [pilon] Writing NODE_11532_length_263_cov_5.830986:1-263 changes to pilon.changes [pilon] Writing updated NODE_11532_length_263_cov_5.830986_pilon to pilon.fasta [pilon] Writing NODE_11533_length_262_cov_32.425532:1-262 changes to pilon.changes [pilon] Writing updated NODE_11533_length_262_cov_32.425532_pilon to pilon.fasta [pilon] Writing NODE_11534_length_262_cov_28.950355:1-262 changes to pilon.changes [pilon] Writing updated NODE_11534_length_262_cov_28.950355_pilon to pilon.fasta [pilon] Writing NODE_11535_length_262_cov_28.234043:1-262 changes to pilon.changes [pilon] Writing updated NODE_11535_length_262_cov_28.234043_pilon to pilon.fasta [pilon] Writing NODE_11536_length_262_cov_27.014184:1-262 changes to pilon.changes [pilon] Writing updated NODE_11536_length_262_cov_27.014184_pilon to pilon.fasta [pilon] Writing NODE_11537_length_262_cov_26.971631:1-262 changes to pilon.changes [pilon] Writing updated NODE_11537_length_262_cov_26.971631_pilon to pilon.fasta [pilon] Writing NODE_11538_length_262_cov_26.234043:1-262 changes to pilon.changes [pilon] Writing updated NODE_11538_length_262_cov_26.234043_pilon to pilon.fasta [pilon] Writing NODE_11539_length_262_cov_23.843972:1-262 changes to pilon.changes [pilon] Writing updated NODE_11539_length_262_cov_23.843972_pilon to pilon.fasta [pilon] Writing NODE_11540_length_262_cov_22.212766:1-262 changes to pilon.changes [pilon] Writing updated NODE_11540_length_262_cov_22.212766_pilon to pilon.fasta [pilon] Writing NODE_11541_length_262_cov_21.794326:1-262 changes to pilon.changes [pilon] Writing updated NODE_11541_length_262_cov_21.794326_pilon to pilon.fasta [pilon] Writing NODE_11542_length_262_cov_21.170213:1-262 changes to pilon.changes [pilon] Writing updated NODE_11542_length_262_cov_21.170213_pilon to pilon.fasta [pilon] Writing NODE_11543_length_262_cov_20.304965:1-262 changes to pilon.changes [pilon] Writing updated NODE_11543_length_262_cov_20.304965_pilon to pilon.fasta [pilon] Writing NODE_11544_length_262_cov_18.673759:1-262 changes to pilon.changes [pilon] Writing updated NODE_11544_length_262_cov_18.673759_pilon to pilon.fasta [pilon] Writing NODE_11545_length_262_cov_17.879433:1-262 changes to pilon.changes [pilon] Writing updated NODE_11545_length_262_cov_17.879433_pilon to pilon.fasta [pilon] Writing NODE_11546_length_262_cov_15.815603:1-262 changes to pilon.changes [pilon] Writing updated NODE_11546_length_262_cov_15.815603_pilon to pilon.fasta [pilon] Writing NODE_11547_length_262_cov_15.198582:1-262 changes to pilon.changes [pilon] Writing updated NODE_11547_length_262_cov_15.198582_pilon to pilon.fasta [pilon] Writing NODE_11548_length_262_cov_14.347518:1-262 changes to pilon.changes [pilon] Writing updated NODE_11548_length_262_cov_14.347518_pilon to pilon.fasta [pilon] Writing NODE_11549_length_262_cov_11.687943:1-262 changes to pilon.changes [pilon] Writing updated NODE_11549_length_262_cov_11.687943_pilon to pilon.fasta [pilon] Writing NODE_11550_length_262_cov_10.148936:1-262 changes to pilon.changes [pilon] Writing updated NODE_11550_length_262_cov_10.148936_pilon to pilon.fasta [pilon] Writing NODE_11551_length_262_cov_6.851064:1-262 changes to pilon.changes [pilon] Writing updated NODE_11551_length_262_cov_6.851064_pilon to pilon.fasta [pilon] Writing NODE_11552_length_261_cov_46.521429:1-261 changes to pilon.changes [pilon] Writing updated NODE_11552_length_261_cov_46.521429_pilon to pilon.fasta [pilon] Writing NODE_11553_length_261_cov_45.400000:1-261 changes to pilon.changes [pilon] Writing updated NODE_11553_length_261_cov_45.400000_pilon to pilon.fasta [pilon] Writing NODE_11554_length_261_cov_38.642857:1-261 changes to pilon.changes [pilon] Writing updated NODE_11554_length_261_cov_38.642857_pilon to pilon.fasta [pilon] Writing NODE_11555_length_261_cov_34.500000:1-261 changes to pilon.changes [pilon] Writing updated NODE_11555_length_261_cov_34.500000_pilon to pilon.fasta [pilon] Writing NODE_11556_length_261_cov_31.785714:1-261 changes to pilon.changes [pilon] Writing updated NODE_11556_length_261_cov_31.785714_pilon to pilon.fasta [pilon] Writing NODE_11557_length_261_cov_31.342857:1-261 changes to pilon.changes [pilon] Writing updated NODE_11557_length_261_cov_31.342857_pilon to pilon.fasta [pilon] Writing NODE_11558_length_261_cov_31.078571:1-261 changes to pilon.changes [pilon] Writing updated NODE_11558_length_261_cov_31.078571_pilon to pilon.fasta [pilon] Writing NODE_11559_length_261_cov_29.785714:1-261 changes to pilon.changes [pilon] Writing updated NODE_11559_length_261_cov_29.785714_pilon to pilon.fasta [pilon] Writing NODE_11560_length_261_cov_28.864286:1-261 changes to pilon.changes [pilon] Writing updated NODE_11560_length_261_cov_28.864286_pilon to pilon.fasta [pilon] Writing NODE_11561_length_261_cov_27.035714:1-261 changes to pilon.changes [pilon] Writing updated NODE_11561_length_261_cov_27.035714_pilon to pilon.fasta [pilon] Writing NODE_11562_length_261_cov_26.792857:1-261 changes to pilon.changes [pilon] Writing updated NODE_11562_length_261_cov_26.792857_pilon to pilon.fasta [pilon] Writing NODE_11563_length_261_cov_26.571429:1-261 changes to pilon.changes [pilon] Writing updated NODE_11563_length_261_cov_26.571429_pilon to pilon.fasta [pilon] Writing NODE_11564_length_261_cov_26.307143:1-261 changes to pilon.changes [pilon] Writing updated NODE_11564_length_261_cov_26.307143_pilon to pilon.fasta [pilon] Writing NODE_11565_length_261_cov_24.935714:1-261 changes to pilon.changes [pilon] Writing updated NODE_11565_length_261_cov_24.935714_pilon to pilon.fasta [pilon] Writing NODE_11566_length_261_cov_24.592857:1-261 changes to pilon.changes [pilon] Writing updated NODE_11566_length_261_cov_24.592857_pilon to pilon.fasta [pilon] Writing NODE_11567_length_261_cov_24.457143:1-261 changes to pilon.changes [pilon] Writing updated NODE_11567_length_261_cov_24.457143_pilon to pilon.fasta [pilon] Writing NODE_11568_length_261_cov_24.135714:1-261 changes to pilon.changes [pilon] Writing updated NODE_11568_length_261_cov_24.135714_pilon to pilon.fasta [pilon] Writing NODE_11569_length_261_cov_24.114286:1-261 changes to pilon.changes [pilon] Writing updated NODE_11569_length_261_cov_24.114286_pilon to pilon.fasta [pilon] Writing NODE_11570_length_261_cov_23.278571:1-261 changes to pilon.changes [pilon] Writing updated NODE_11570_length_261_cov_23.278571_pilon to pilon.fasta [pilon] Writing NODE_11571_length_261_cov_22.992857:1-261 changes to pilon.changes [pilon] Writing updated NODE_11571_length_261_cov_22.992857_pilon to pilon.fasta [pilon] Writing NODE_11572_length_261_cov_22.521429:1-261 changes to pilon.changes [pilon] Writing updated NODE_11572_length_261_cov_22.521429_pilon to pilon.fasta [pilon] Writing NODE_11573_length_261_cov_22.350000:1-261 changes to pilon.changes [pilon] Writing updated NODE_11573_length_261_cov_22.350000_pilon to pilon.fasta [pilon] Writing NODE_11574_length_261_cov_20.121429:1-261 changes to pilon.changes [pilon] Writing updated NODE_11574_length_261_cov_20.121429_pilon to pilon.fasta [pilon] Writing NODE_11575_length_261_cov_18.978571:1-261 changes to pilon.changes [pilon] Writing updated NODE_11575_length_261_cov_18.978571_pilon to pilon.fasta [pilon] Writing NODE_11576_length_261_cov_18.635714:1-261 changes to pilon.changes [pilon] Writing updated NODE_11576_length_261_cov_18.635714_pilon to pilon.fasta [pilon] Writing NODE_11577_length_261_cov_18.307143:1-261 changes to pilon.changes [pilon] Writing updated NODE_11577_length_261_cov_18.307143_pilon to pilon.fasta [pilon] Writing NODE_11578_length_261_cov_17.800000:1-261 changes to pilon.changes [pilon] Writing updated NODE_11578_length_261_cov_17.800000_pilon to pilon.fasta [pilon] Writing NODE_11579_length_261_cov_17.521429:1-261 changes to pilon.changes [pilon] Writing updated NODE_11579_length_261_cov_17.521429_pilon to pilon.fasta [pilon] Writing NODE_11580_length_261_cov_17.021429:1-261 changes to pilon.changes [pilon] Writing updated NODE_11580_length_261_cov_17.021429_pilon to pilon.fasta [pilon] Writing NODE_11581_length_261_cov_16.350000:1-261 changes to pilon.changes [pilon] Writing updated NODE_11581_length_261_cov_16.350000_pilon to pilon.fasta [pilon] Writing NODE_11582_length_261_cov_16.121429:1-261 changes to pilon.changes [pilon] Writing updated NODE_11582_length_261_cov_16.121429_pilon to pilon.fasta [pilon] Writing NODE_11583_length_261_cov_15.392857:1-261 changes to pilon.changes [pilon] Writing updated NODE_11583_length_261_cov_15.392857_pilon to pilon.fasta [pilon] Writing NODE_11584_length_261_cov_14.878571:1-261 changes to pilon.changes [pilon] Writing updated NODE_11584_length_261_cov_14.878571_pilon to pilon.fasta [pilon] Writing NODE_11585_length_261_cov_14.185714:1-261 changes to pilon.changes [pilon] Writing updated NODE_11585_length_261_cov_14.185714_pilon to pilon.fasta [pilon] Writing NODE_11586_length_261_cov_13.785714:1-261 changes to pilon.changes [pilon] Writing updated NODE_11586_length_261_cov_13.785714_pilon to pilon.fasta [pilon] Writing NODE_11587_length_261_cov_13.435714:1-261 changes to pilon.changes [pilon] Writing updated NODE_11587_length_261_cov_13.435714_pilon to pilon.fasta [pilon] Writing NODE_11588_length_261_cov_13.000000:1-261 changes to pilon.changes [pilon] Writing updated NODE_11588_length_261_cov_13.000000_pilon to pilon.fasta [pilon] Writing NODE_11589_length_261_cov_12.714286:1-261 changes to pilon.changes [pilon] Writing updated NODE_11589_length_261_cov_12.714286_pilon to pilon.fasta [pilon] Writing NODE_11590_length_261_cov_8.478571:1-261 changes to pilon.changes [pilon] Writing updated NODE_11590_length_261_cov_8.478571_pilon to pilon.fasta [pilon] Writing NODE_11591_length_261_cov_7.192857:1-261 changes to pilon.changes [pilon] Writing updated NODE_11591_length_261_cov_7.192857_pilon to pilon.fasta [pilon] Writing NODE_11592_length_261_cov_7.178571:1-261 changes to pilon.changes [pilon] Writing updated NODE_11592_length_261_cov_7.178571_pilon to pilon.fasta [pilon] Writing NODE_11593_length_261_cov_7.092857:1-261 changes to pilon.changes [pilon] Writing updated NODE_11593_length_261_cov_7.092857_pilon to pilon.fasta [pilon] Writing NODE_11594_length_261_cov_6.557143:1-261 changes to pilon.changes [pilon] Writing updated NODE_11594_length_261_cov_6.557143_pilon to pilon.fasta [pilon] Writing NODE_11595_length_261_cov_6.285714:1-261 changes to pilon.changes [pilon] Writing updated NODE_11595_length_261_cov_6.285714_pilon to pilon.fasta [pilon] Writing NODE_11596_length_261_cov_5.271429:1-261 changes to pilon.changes [pilon] Writing updated NODE_11596_length_261_cov_5.271429_pilon to pilon.fasta [pilon] Writing NODE_11597_length_261_cov_5.164286:1-261 changes to pilon.changes [pilon] Writing updated NODE_11597_length_261_cov_5.164286_pilon to pilon.fasta [pilon] Writing NODE_11598_length_261_cov_5.021429:1-261 changes to pilon.changes [pilon] Writing updated NODE_11598_length_261_cov_5.021429_pilon to pilon.fasta [pilon] Writing NODE_11599_length_260_cov_30.100719:1-260 changes to pilon.changes [pilon] Writing updated NODE_11599_length_260_cov_30.100719_pilon to pilon.fasta [pilon] Writing NODE_11600_length_260_cov_20.086331:1-260 changes to pilon.changes [pilon] Writing updated NODE_11600_length_260_cov_20.086331_pilon to pilon.fasta [pilon] Writing NODE_11601_length_260_cov_17.546763:1-260 changes to pilon.changes [pilon] Writing updated NODE_11601_length_260_cov_17.546763_pilon to pilon.fasta [pilon] Writing NODE_11602_length_260_cov_16.223022:1-260 changes to pilon.changes [pilon] Writing updated NODE_11602_length_260_cov_16.223022_pilon to pilon.fasta [pilon] Writing NODE_11603_length_260_cov_12.151079:1-260 changes to pilon.changes [pilon] Writing updated NODE_11603_length_260_cov_12.151079_pilon to pilon.fasta [pilon] Writing NODE_11604_length_260_cov_10.741007:1-260 changes to pilon.changes [pilon] Writing updated NODE_11604_length_260_cov_10.741007_pilon to pilon.fasta [pilon] Writing NODE_11605_length_260_cov_7.172662:1-260 changes to pilon.changes [pilon] Writing updated NODE_11605_length_260_cov_7.172662_pilon to pilon.fasta [pilon] Writing NODE_11606_length_260_cov_7.007194:1-260 changes to pilon.changes [pilon] Writing updated NODE_11606_length_260_cov_7.007194_pilon to pilon.fasta [pilon] Writing NODE_11607_length_260_cov_5.172662:1-260 changes to pilon.changes [pilon] Writing updated NODE_11607_length_260_cov_5.172662_pilon to pilon.fasta [pilon] Writing NODE_11608_length_260_cov_4.294964:1-260 changes to pilon.changes [pilon] Writing updated NODE_11608_length_260_cov_4.294964_pilon to pilon.fasta [pilon] Writing NODE_11609_length_260_cov_1.856115:1-260 changes to pilon.changes [pilon] Writing updated NODE_11609_length_260_cov_1.856115_pilon to pilon.fasta [pilon] Writing NODE_11610_length_259_cov_30.913043:1-259 changes to pilon.changes [pilon] Writing updated NODE_11610_length_259_cov_30.913043_pilon to pilon.fasta [pilon] Writing NODE_11611_length_259_cov_14.826087:1-259 changes to pilon.changes [pilon] Writing updated NODE_11611_length_259_cov_14.826087_pilon to pilon.fasta [pilon] Writing NODE_11612_length_259_cov_11.818841:1-259 changes to pilon.changes [pilon] Writing updated NODE_11612_length_259_cov_11.818841_pilon to pilon.fasta [pilon] Writing NODE_11613_length_259_cov_10.862319:1-259 changes to pilon.changes [pilon] Writing updated NODE_11613_length_259_cov_10.862319_pilon to pilon.fasta [pilon] Writing NODE_11614_length_259_cov_10.007246:1-259 changes to pilon.changes [pilon] Writing updated NODE_11614_length_259_cov_10.007246_pilon to pilon.fasta [pilon] Writing NODE_11615_length_259_cov_9.500000:1-259 changes to pilon.changes [pilon] Writing updated NODE_11615_length_259_cov_9.500000_pilon to pilon.fasta [pilon] Writing NODE_11616_length_259_cov_8.188406:1-259 changes to pilon.changes [pilon] Writing updated NODE_11616_length_259_cov_8.188406_pilon to pilon.fasta [pilon] Writing NODE_11617_length_259_cov_7.601449:1-259 changes to pilon.changes [pilon] Writing updated NODE_11617_length_259_cov_7.601449_pilon to pilon.fasta [pilon] Writing NODE_11618_length_259_cov_5.673913:1-259 changes to pilon.changes [pilon] Writing updated NODE_11618_length_259_cov_5.673913_pilon to pilon.fasta [pilon] Writing NODE_11619_length_259_cov_1.224638:1-259 changes to pilon.changes [pilon] Writing updated NODE_11619_length_259_cov_1.224638_pilon to pilon.fasta [pilon] Writing NODE_11620_length_258_cov_37.781022:1-258 changes to pilon.changes [pilon] Writing updated NODE_11620_length_258_cov_37.781022_pilon to pilon.fasta [pilon] Writing NODE_11621_length_258_cov_30.102190:1-258 changes to pilon.changes [pilon] Writing updated NODE_11621_length_258_cov_30.102190_pilon to pilon.fasta [pilon] Writing NODE_11622_length_258_cov_28.277372:1-258 changes to pilon.changes [pilon] Writing updated NODE_11622_length_258_cov_28.277372_pilon to pilon.fasta [pilon] Writing NODE_11623_length_258_cov_27.605839:1-258 changes to pilon.changes [pilon] Writing updated NODE_11623_length_258_cov_27.605839_pilon to pilon.fasta [pilon] Writing NODE_11624_length_258_cov_26.547445:1-258 changes to pilon.changes [pilon] Writing updated NODE_11624_length_258_cov_26.547445_pilon to pilon.fasta [pilon] Writing NODE_11625_length_258_cov_25.839416:1-258 changes to pilon.changes [pilon] Writing updated NODE_11625_length_258_cov_25.839416_pilon to pilon.fasta [pilon] Writing NODE_11626_length_258_cov_24.795620:1-258 changes to pilon.changes [pilon] Writing updated NODE_11626_length_258_cov_24.795620_pilon to pilon.fasta [pilon] Writing NODE_11627_length_258_cov_24.452555:1-258 changes to pilon.changes [pilon] Writing updated NODE_11627_length_258_cov_24.452555_pilon to pilon.fasta [pilon] Writing NODE_11628_length_258_cov_23.759124:1-258 changes to pilon.changes [pilon] Writing updated NODE_11628_length_258_cov_23.759124_pilon to pilon.fasta [pilon] Writing NODE_11629_length_258_cov_23.729927:1-258 changes to pilon.changes [pilon] Writing updated NODE_11629_length_258_cov_23.729927_pilon to pilon.fasta [pilon] Writing NODE_11630_length_258_cov_22.729927:1-258 changes to pilon.changes [pilon] Writing updated NODE_11630_length_258_cov_22.729927_pilon to pilon.fasta [pilon] Writing NODE_11631_length_258_cov_22.503650:1-258 changes to pilon.changes [pilon] Writing updated NODE_11631_length_258_cov_22.503650_pilon to pilon.fasta [pilon] Writing NODE_11632_length_258_cov_22.145985:1-258 changes to pilon.changes [pilon] Writing updated NODE_11632_length_258_cov_22.145985_pilon to pilon.fasta [pilon] Writing NODE_11633_length_258_cov_21.934307:1-258 changes to pilon.changes [pilon] Writing updated NODE_11633_length_258_cov_21.934307_pilon to pilon.fasta [pilon] Writing NODE_11634_length_258_cov_21.934307:1-258 changes to pilon.changes [pilon] Writing updated NODE_11634_length_258_cov_21.934307_pilon to pilon.fasta [pilon] Writing NODE_11635_length_258_cov_21.737226:1-258 changes to pilon.changes [pilon] Writing updated NODE_11635_length_258_cov_21.737226_pilon to pilon.fasta [pilon] Writing NODE_11636_length_258_cov_21.708029:1-258 changes to pilon.changes [pilon] Writing updated NODE_11636_length_258_cov_21.708029_pilon to pilon.fasta [pilon] Writing NODE_11637_length_258_cov_21.343066:1-258 changes to pilon.changes [pilon] Writing updated NODE_11637_length_258_cov_21.343066_pilon to pilon.fasta [pilon] Writing NODE_11638_length_258_cov_20.620438:1-258 changes to pilon.changes [pilon] Writing updated NODE_11638_length_258_cov_20.620438_pilon to pilon.fasta [pilon] Writing NODE_11639_length_258_cov_19.540146:1-258 changes to pilon.changes [pilon] Writing updated NODE_11639_length_258_cov_19.540146_pilon to pilon.fasta [pilon] Writing NODE_11640_length_258_cov_18.810219:1-258 changes to pilon.changes [pilon] Writing updated NODE_11640_length_258_cov_18.810219_pilon to pilon.fasta [pilon] Writing NODE_11641_length_258_cov_18.518248:1-258 changes to pilon.changes [pilon] Writing updated NODE_11641_length_258_cov_18.518248_pilon to pilon.fasta [pilon] Writing NODE_11642_length_258_cov_17.036496:1-258 changes to pilon.changes [pilon] Writing updated NODE_11642_length_258_cov_17.036496_pilon to pilon.fasta [pilon] Writing NODE_11643_length_258_cov_16.861314:1-258 changes to pilon.changes [pilon] Writing updated NODE_11643_length_258_cov_16.861314_pilon to pilon.fasta [pilon] Writing NODE_11644_length_258_cov_16.759124:1-258 changes to pilon.changes [pilon] Writing updated NODE_11644_length_258_cov_16.759124_pilon to pilon.fasta [pilon] Writing NODE_11645_length_258_cov_16.525547:1-258 changes to pilon.changes [pilon] Writing updated NODE_11645_length_258_cov_16.525547_pilon to pilon.fasta [pilon] Writing NODE_11646_length_258_cov_16.131387:1-258 changes to pilon.changes [pilon] Writing updated NODE_11646_length_258_cov_16.131387_pilon to pilon.fasta [pilon] Writing NODE_11647_length_258_cov_15.970803:1-258 changes to pilon.changes [pilon] Writing updated NODE_11647_length_258_cov_15.970803_pilon to pilon.fasta [pilon] Writing NODE_11648_length_258_cov_15.766423:1-258 changes to pilon.changes [pilon] Writing updated NODE_11648_length_258_cov_15.766423_pilon to pilon.fasta [pilon] Writing NODE_11649_length_258_cov_15.525547:1-258 changes to pilon.changes [pilon] Writing updated NODE_11649_length_258_cov_15.525547_pilon to pilon.fasta [pilon] Writing NODE_11650_length_258_cov_15.145985:1-258 changes to pilon.changes [pilon] Writing updated NODE_11650_length_258_cov_15.145985_pilon to pilon.fasta [pilon] Writing NODE_11651_length_258_cov_14.613139:1-258 changes to pilon.changes [pilon] Writing updated NODE_11651_length_258_cov_14.613139_pilon to pilon.fasta [pilon] Writing NODE_11652_length_258_cov_14.145985:1-258 changes to pilon.changes [pilon] Writing updated NODE_11652_length_258_cov_14.145985_pilon to pilon.fasta [pilon] Writing NODE_11653_length_258_cov_13.350365:1-258 changes to pilon.changes [pilon] Writing updated NODE_11653_length_258_cov_13.350365_pilon to pilon.fasta [pilon] Writing NODE_11654_length_258_cov_13.291971:1-258 changes to pilon.changes [pilon] Writing updated NODE_11654_length_258_cov_13.291971_pilon to pilon.fasta [pilon] Writing NODE_11655_length_258_cov_13.065693:1-258 changes to pilon.changes [pilon] Writing updated NODE_11655_length_258_cov_13.065693_pilon to pilon.fasta [pilon] Writing NODE_11656_length_258_cov_12.956204:1-258 changes to pilon.changes [pilon] Writing updated NODE_11656_length_258_cov_12.956204_pilon to pilon.fasta [pilon] Writing NODE_11657_length_258_cov_12.854015:1-258 changes to pilon.changes [pilon] Writing updated NODE_11657_length_258_cov_12.854015_pilon to pilon.fasta [pilon] Writing NODE_11658_length_258_cov_12.671533:1-258 changes to pilon.changes [pilon] Writing updated NODE_11658_length_258_cov_12.671533_pilon to pilon.fasta [pilon] Writing NODE_11659_length_258_cov_12.335766:1-258 changes to pilon.changes [pilon] Writing updated NODE_11659_length_258_cov_12.335766_pilon to pilon.fasta [pilon] Writing NODE_11660_length_258_cov_12.248175:1-258 changes to pilon.changes [pilon] Writing updated NODE_11660_length_258_cov_12.248175_pilon to pilon.fasta [pilon] Writing NODE_11661_length_258_cov_12.080292:1-258 changes to pilon.changes [pilon] Writing updated NODE_11661_length_258_cov_12.080292_pilon to pilon.fasta [pilon] Writing NODE_11662_length_258_cov_11.729927:1-258 changes to pilon.changes [pilon] Writing updated NODE_11662_length_258_cov_11.729927_pilon to pilon.fasta [pilon] Writing NODE_11663_length_258_cov_11.080292:1-258 changes to pilon.changes [pilon] Writing updated NODE_11663_length_258_cov_11.080292_pilon to pilon.fasta [pilon] Writing NODE_11664_length_258_cov_10.963504:1-258 changes to pilon.changes [pilon] Writing updated NODE_11664_length_258_cov_10.963504_pilon to pilon.fasta [pilon] Writing NODE_11665_length_258_cov_9.992701:1-258 changes to pilon.changes [pilon] Writing updated NODE_11665_length_258_cov_9.992701_pilon to pilon.fasta [pilon] Writing NODE_11666_length_258_cov_9.970803:1-258 changes to pilon.changes [pilon] Writing updated NODE_11666_length_258_cov_9.970803_pilon to pilon.fasta [pilon] Writing NODE_11667_length_258_cov_9.912409:1-258 changes to pilon.changes [pilon] Writing updated NODE_11667_length_258_cov_9.912409_pilon to pilon.fasta [pilon] Writing NODE_11668_length_258_cov_9.554745:1-258 changes to pilon.changes [pilon] Writing updated NODE_11668_length_258_cov_9.554745_pilon to pilon.fasta [pilon] Writing NODE_11669_length_258_cov_9.445255:1-258 changes to pilon.changes [pilon] Writing updated NODE_11669_length_258_cov_9.445255_pilon to pilon.fasta [pilon] Writing NODE_11670_length_258_cov_9.240876:1-258 changes to pilon.changes [pilon] Writing updated NODE_11670_length_258_cov_9.240876_pilon to pilon.fasta [pilon] Writing NODE_11671_length_258_cov_8.576642:1-258 changes to pilon.changes [pilon] Writing updated NODE_11671_length_258_cov_8.576642_pilon to pilon.fasta [pilon] Writing NODE_11672_length_258_cov_8.510949:1-258 changes to pilon.changes [pilon] Writing updated NODE_11672_length_258_cov_8.510949_pilon to pilon.fasta [pilon] Writing NODE_11673_length_258_cov_8.138686:1-258 changes to pilon.changes [pilon] Writing updated NODE_11673_length_258_cov_8.138686_pilon to pilon.fasta [pilon] Writing NODE_11674_length_258_cov_7.503650:1-258 changes to pilon.changes [pilon] Writing updated NODE_11674_length_258_cov_7.503650_pilon to pilon.fasta [pilon] Writing NODE_11675_length_258_cov_7.416058:1-258 changes to pilon.changes [pilon] Writing updated NODE_11675_length_258_cov_7.416058_pilon to pilon.fasta [pilon] Writing NODE_11676_length_258_cov_7.401460:1-258 changes to pilon.changes [pilon] Writing updated NODE_11676_length_258_cov_7.401460_pilon to pilon.fasta [pilon] Writing NODE_11677_length_258_cov_7.218978:1-258 changes to pilon.changes [pilon] Writing updated NODE_11677_length_258_cov_7.218978_pilon to pilon.fasta [pilon] Writing NODE_11678_length_258_cov_7.167883:1-258 changes to pilon.changes [pilon] Writing updated NODE_11678_length_258_cov_7.167883_pilon to pilon.fasta [pilon] Writing NODE_11679_length_258_cov_6.788321:1-258 changes to pilon.changes [pilon] Writing updated NODE_11679_length_258_cov_6.788321_pilon to pilon.fasta [pilon] Writing NODE_11680_length_258_cov_6.233577:1-258 changes to pilon.changes [pilon] Writing updated NODE_11680_length_258_cov_6.233577_pilon to pilon.fasta [pilon] Writing NODE_11681_length_258_cov_2.197080:1-258 changes to pilon.changes [pilon] Writing updated NODE_11681_length_258_cov_2.197080_pilon to pilon.fasta [pilon] Writing NODE_11682_length_257_cov_23.955882:1-257 changes to pilon.changes [pilon] Writing updated NODE_11682_length_257_cov_23.955882_pilon to pilon.fasta [pilon] Writing NODE_11683_length_257_cov_12.345588:1-257 changes to pilon.changes [pilon] Writing updated NODE_11683_length_257_cov_12.345588_pilon to pilon.fasta [pilon] Writing NODE_11684_length_257_cov_11.000000:1-257 changes to pilon.changes [pilon] Writing updated NODE_11684_length_257_cov_11.000000_pilon to pilon.fasta [pilon] Writing NODE_11685_length_257_cov_10.433824:1-257 changes to pilon.changes [pilon] Writing updated NODE_11685_length_257_cov_10.433824_pilon to pilon.fasta [pilon] Writing NODE_11686_length_257_cov_9.257353:1-257 changes to pilon.changes [pilon] Writing updated NODE_11686_length_257_cov_9.257353_pilon to pilon.fasta [pilon] Writing NODE_11687_length_257_cov_8.014706:1-257 changes to pilon.changes [pilon] Writing updated NODE_11687_length_257_cov_8.014706_pilon to pilon.fasta [pilon] Writing NODE_11688_length_257_cov_6.154412:1-257 changes to pilon.changes [pilon] Writing updated NODE_11688_length_257_cov_6.154412_pilon to pilon.fasta [pilon] Writing NODE_11689_length_257_cov_5.860294:1-257 changes to pilon.changes [pilon] Writing updated NODE_11689_length_257_cov_5.860294_pilon to pilon.fasta [pilon] Writing NODE_11690_length_257_cov_5.433824:1-257 changes to pilon.changes [pilon] Writing updated NODE_11690_length_257_cov_5.433824_pilon to pilon.fasta [pilon] Writing NODE_11691_length_256_cov_57.681481:1-256 changes to pilon.changes [pilon] Writing updated NODE_11691_length_256_cov_57.681481_pilon to pilon.fasta [pilon] Writing NODE_11692_length_256_cov_43.355556:1-256 changes to pilon.changes [pilon] Writing updated NODE_11692_length_256_cov_43.355556_pilon to pilon.fasta [pilon] Writing NODE_11693_length_256_cov_30.948148:1-256 changes to pilon.changes [pilon] Writing updated NODE_11693_length_256_cov_30.948148_pilon to pilon.fasta [pilon] Writing NODE_11694_length_256_cov_19.496296:1-256 changes to pilon.changes [pilon] Writing updated NODE_11694_length_256_cov_19.496296_pilon to pilon.fasta [pilon] Writing NODE_11695_length_256_cov_16.444444:1-256 changes to pilon.changes [pilon] Writing updated NODE_11695_length_256_cov_16.444444_pilon to pilon.fasta [pilon] Writing NODE_11696_length_256_cov_12.903704:1-256 changes to pilon.changes [pilon] Writing updated NODE_11696_length_256_cov_12.903704_pilon to pilon.fasta [pilon] Writing NODE_11697_length_256_cov_8.244444:1-256 changes to pilon.changes [pilon] Writing updated NODE_11697_length_256_cov_8.244444_pilon to pilon.fasta [pilon] Writing NODE_11698_length_256_cov_7.562963:1-256 changes to pilon.changes [pilon] Writing updated NODE_11698_length_256_cov_7.562963_pilon to pilon.fasta [pilon] Writing NODE_11699_length_256_cov_6.511111:1-256 changes to pilon.changes [pilon] Writing updated NODE_11699_length_256_cov_6.511111_pilon to pilon.fasta [pilon] Writing NODE_11700_length_256_cov_5.185185:1-256 changes to pilon.changes [pilon] Writing updated NODE_11700_length_256_cov_5.185185_pilon to pilon.fasta [pilon] Writing NODE_11701_length_255_cov_43.902985:1-255 changes to pilon.changes [pilon] Writing updated NODE_11701_length_255_cov_43.902985_pilon to pilon.fasta [pilon] Writing NODE_11702_length_255_cov_43.037313:1-255 changes to pilon.changes [pilon] Writing updated NODE_11702_length_255_cov_43.037313_pilon to pilon.fasta [pilon] Writing NODE_11703_length_255_cov_41.104478:1-255 changes to pilon.changes [pilon] Writing updated NODE_11703_length_255_cov_41.104478_pilon to pilon.fasta [pilon] Writing NODE_11704_length_255_cov_32.865672:1-255 changes to pilon.changes [pilon] Writing updated NODE_11704_length_255_cov_32.865672_pilon to pilon.fasta [pilon] Writing NODE_11705_length_255_cov_31.716418:1-255 changes to pilon.changes [pilon] Writing updated NODE_11705_length_255_cov_31.716418_pilon to pilon.fasta [pilon] Writing NODE_11706_length_255_cov_31.589552:1-255 changes to pilon.changes [pilon] Writing updated NODE_11706_length_255_cov_31.589552_pilon to pilon.fasta [pilon] Writing NODE_11707_length_255_cov_31.447761:1-255 changes to pilon.changes [pilon] Writing updated NODE_11707_length_255_cov_31.447761_pilon to pilon.fasta [pilon] Writing NODE_11708_length_255_cov_30.492537:1-255 changes to pilon.changes [pilon] Writing updated NODE_11708_length_255_cov_30.492537_pilon to pilon.fasta [pilon] Writing NODE_11709_length_255_cov_30.477612:1-255 changes to pilon.changes [pilon] Writing updated NODE_11709_length_255_cov_30.477612_pilon to pilon.fasta [pilon] Writing NODE_11710_length_255_cov_30.208955:1-255 changes to pilon.changes [pilon] Writing updated NODE_11710_length_255_cov_30.208955_pilon to pilon.fasta [pilon] Writing NODE_11711_length_255_cov_29.350746:1-255 changes to pilon.changes [pilon] Writing updated NODE_11711_length_255_cov_29.350746_pilon to pilon.fasta [pilon] Writing NODE_11712_length_255_cov_29.231343:1-255 changes to pilon.changes [pilon] Writing updated NODE_11712_length_255_cov_29.231343_pilon to pilon.fasta [pilon] Writing NODE_11713_length_255_cov_29.134328:1-255 changes to pilon.changes [pilon] Writing updated NODE_11713_length_255_cov_29.134328_pilon to pilon.fasta [pilon] Writing NODE_11714_length_255_cov_28.552239:1-255 changes to pilon.changes [pilon] Writing updated NODE_11714_length_255_cov_28.552239_pilon to pilon.fasta [pilon] Writing NODE_11715_length_255_cov_28.455224:1-255 changes to pilon.changes [pilon] Writing updated NODE_11715_length_255_cov_28.455224_pilon to pilon.fasta [pilon] Writing NODE_11716_length_255_cov_27.947761:1-255 changes to pilon.changes [pilon] Writing updated NODE_11716_length_255_cov_27.947761_pilon to pilon.fasta [pilon] Writing NODE_11717_length_255_cov_27.425373:1-255 changes to pilon.changes [pilon] Writing updated NODE_11717_length_255_cov_27.425373_pilon to pilon.fasta [pilon] Writing NODE_11718_length_255_cov_27.208955:1-255 changes to pilon.changes [pilon] Writing updated NODE_11718_length_255_cov_27.208955_pilon to pilon.fasta [pilon] Writing NODE_11719_length_255_cov_26.671642:1-255 changes to pilon.changes [pilon] Writing updated NODE_11719_length_255_cov_26.671642_pilon to pilon.fasta [pilon] Writing NODE_11720_length_255_cov_25.582090:1-255 changes to pilon.changes [pilon] Writing updated NODE_11720_length_255_cov_25.582090_pilon to pilon.fasta [pilon] Writing NODE_11721_length_255_cov_24.582090:1-255 changes to pilon.changes [pilon] Writing updated NODE_11721_length_255_cov_24.582090_pilon to pilon.fasta [pilon] Writing NODE_11722_length_255_cov_24.462687:1-255 changes to pilon.changes [pilon] Writing updated NODE_11722_length_255_cov_24.462687_pilon to pilon.fasta [pilon] Writing NODE_11723_length_255_cov_24.432836:1-255 changes to pilon.changes [pilon] Writing updated NODE_11723_length_255_cov_24.432836_pilon to pilon.fasta [pilon] Writing NODE_11724_length_255_cov_24.417910:1-255 changes to pilon.changes [pilon] Writing updated NODE_11724_length_255_cov_24.417910_pilon to pilon.fasta [pilon] Writing NODE_11725_length_255_cov_24.373134:1-255 changes to pilon.changes [pilon] Writing updated NODE_11725_length_255_cov_24.373134_pilon to pilon.fasta [pilon] Writing NODE_11726_length_255_cov_24.365672:1-255 changes to pilon.changes [pilon] Writing updated NODE_11726_length_255_cov_24.365672_pilon to pilon.fasta [pilon] Writing NODE_11727_length_255_cov_23.470149:1-255 changes to pilon.changes [pilon] Writing updated NODE_11727_length_255_cov_23.470149_pilon to pilon.fasta [pilon] Writing NODE_11728_length_255_cov_23.402985:1-255 changes to pilon.changes [pilon] Writing updated NODE_11728_length_255_cov_23.402985_pilon to pilon.fasta [pilon] Writing NODE_11729_length_255_cov_22.582090:1-255 changes to pilon.changes [pilon] Writing updated NODE_11729_length_255_cov_22.582090_pilon to pilon.fasta [pilon] Writing NODE_11730_length_255_cov_22.395522:1-255 changes to pilon.changes [pilon] Writing updated NODE_11730_length_255_cov_22.395522_pilon to pilon.fasta [pilon] Writing NODE_11731_length_255_cov_22.253731:1-255 changes to pilon.changes [pilon] Writing updated NODE_11731_length_255_cov_22.253731_pilon to pilon.fasta [pilon] Writing NODE_11732_length_255_cov_22.223881:1-255 changes to pilon.changes [pilon] Writing updated NODE_11732_length_255_cov_22.223881_pilon to pilon.fasta [pilon] Writing NODE_11733_length_255_cov_21.873134:1-255 changes to pilon.changes [pilon] Writing updated NODE_11733_length_255_cov_21.873134_pilon to pilon.fasta [pilon] Writing NODE_11734_length_255_cov_21.544776:1-255 changes to pilon.changes [pilon] Writing updated NODE_11734_length_255_cov_21.544776_pilon to pilon.fasta [pilon] Writing NODE_11735_length_255_cov_21.313433:1-255 changes to pilon.changes [pilon] Writing updated NODE_11735_length_255_cov_21.313433_pilon to pilon.fasta [pilon] Writing NODE_11736_length_255_cov_20.738806:1-255 changes to pilon.changes [pilon] Writing updated NODE_11736_length_255_cov_20.738806_pilon to pilon.fasta [pilon] Writing NODE_11737_length_255_cov_20.626866:1-255 changes to pilon.changes [pilon] Writing updated NODE_11737_length_255_cov_20.626866_pilon to pilon.fasta [pilon] Writing NODE_11738_length_255_cov_20.261194:1-255 changes to pilon.changes [pilon] Writing updated NODE_11738_length_255_cov_20.261194_pilon to pilon.fasta [pilon] Writing NODE_11739_length_255_cov_20.208955:1-255 changes to pilon.changes [pilon] Writing updated NODE_11739_length_255_cov_20.208955_pilon to pilon.fasta [pilon] Writing NODE_11740_length_255_cov_20.208955:1-255 changes to pilon.changes [pilon] Writing updated NODE_11740_length_255_cov_20.208955_pilon to pilon.fasta [pilon] Writing NODE_11741_length_255_cov_19.932836:1-255 changes to pilon.changes [pilon] Writing updated NODE_11741_length_255_cov_19.932836_pilon to pilon.fasta [pilon] Writing NODE_11742_length_255_cov_19.716418:1-255 changes to pilon.changes [pilon] Writing updated NODE_11742_length_255_cov_19.716418_pilon to pilon.fasta [pilon] Writing NODE_11743_length_255_cov_19.567164:1-255 changes to pilon.changes [pilon] Writing updated NODE_11743_length_255_cov_19.567164_pilon to pilon.fasta [pilon] Writing NODE_11744_length_255_cov_19.283582:1-255 changes to pilon.changes [pilon] Writing updated NODE_11744_length_255_cov_19.283582_pilon to pilon.fasta [pilon] Writing NODE_11745_length_255_cov_19.276119:1-255 changes to pilon.changes [pilon] Writing updated NODE_11745_length_255_cov_19.276119_pilon to pilon.fasta [pilon] Writing NODE_11746_length_255_cov_19.000000:1-255 changes to pilon.changes [pilon] Writing updated NODE_11746_length_255_cov_19.000000_pilon to pilon.fasta [pilon] Writing NODE_11747_length_255_cov_18.768657:1-255 changes to pilon.changes [pilon] Writing updated NODE_11747_length_255_cov_18.768657_pilon to pilon.fasta [pilon] Writing NODE_11748_length_255_cov_18.611940:1-255 changes to pilon.changes [pilon] Writing updated NODE_11748_length_255_cov_18.611940_pilon to pilon.fasta [pilon] Writing NODE_11749_length_255_cov_18.395522:1-255 changes to pilon.changes [pilon] Writing updated NODE_11749_length_255_cov_18.395522_pilon to pilon.fasta [pilon] Writing NODE_11750_length_255_cov_17.365672:1-255 changes to pilon.changes [pilon] Writing updated NODE_11750_length_255_cov_17.365672_pilon to pilon.fasta [pilon] Writing NODE_11751_length_255_cov_17.253731:1-255 changes to pilon.changes [pilon] Writing updated NODE_11751_length_255_cov_17.253731_pilon to pilon.fasta [pilon] Writing NODE_11752_length_255_cov_17.171642:1-255 changes to pilon.changes [pilon] Writing updated NODE_11752_length_255_cov_17.171642_pilon to pilon.fasta [pilon] Writing NODE_11753_length_255_cov_16.619403:1-255 changes to pilon.changes [pilon] Writing updated NODE_11753_length_255_cov_16.619403_pilon to pilon.fasta [pilon] Writing NODE_11754_length_255_cov_15.985075:1-255 changes to pilon.changes [pilon] Writing updated NODE_11754_length_255_cov_15.985075_pilon to pilon.fasta [pilon] Writing NODE_11755_length_255_cov_15.097015:1-255 changes to pilon.changes [pilon] Writing updated NODE_11755_length_255_cov_15.097015_pilon to pilon.fasta [pilon] Writing NODE_11756_length_255_cov_14.708955:1-255 changes to pilon.changes [pilon] Writing updated NODE_11756_length_255_cov_14.708955_pilon to pilon.fasta [pilon] Writing NODE_11757_length_255_cov_14.492537:1-255 changes to pilon.changes [pilon] Writing updated NODE_11757_length_255_cov_14.492537_pilon to pilon.fasta [pilon] Writing NODE_11758_length_255_cov_14.059701:1-255 changes to pilon.changes [pilon] Writing updated NODE_11758_length_255_cov_14.059701_pilon to pilon.fasta [pilon] Writing NODE_11759_length_255_cov_13.865672:1-255 changes to pilon.changes [pilon] Writing updated NODE_11759_length_255_cov_13.865672_pilon to pilon.fasta [pilon] Writing NODE_11760_length_255_cov_13.858209:1-255 changes to pilon.changes [pilon] Writing updated NODE_11760_length_255_cov_13.858209_pilon to pilon.fasta [pilon] Writing NODE_11761_length_255_cov_13.664179:1-255 changes to pilon.changes [pilon] Writing updated NODE_11761_length_255_cov_13.664179_pilon to pilon.fasta [pilon] Writing NODE_11762_length_255_cov_13.388060:1-255 changes to pilon.changes [pilon] Writing updated NODE_11762_length_255_cov_13.388060_pilon to pilon.fasta [pilon] Writing NODE_11763_length_255_cov_13.246269:1-255 changes to pilon.changes [pilon] Writing updated NODE_11763_length_255_cov_13.246269_pilon to pilon.fasta [pilon] Writing NODE_11764_length_255_cov_12.164179:1-255 changes to pilon.changes [pilon] Writing updated NODE_11764_length_255_cov_12.164179_pilon to pilon.fasta [pilon] Writing NODE_11765_length_255_cov_12.059701:1-255 changes to pilon.changes [pilon] Writing updated NODE_11765_length_255_cov_12.059701_pilon to pilon.fasta [pilon] Writing NODE_11766_length_255_cov_11.432836:1-255 changes to pilon.changes [pilon] Writing updated NODE_11766_length_255_cov_11.432836_pilon to pilon.fasta [pilon] Writing NODE_11767_length_255_cov_11.171642:1-255 changes to pilon.changes [pilon] Writing updated NODE_11767_length_255_cov_11.171642_pilon to pilon.fasta [pilon] Writing NODE_11768_length_255_cov_8.604478:1-255 changes to pilon.changes [pilon] Writing updated NODE_11768_length_255_cov_8.604478_pilon to pilon.fasta [pilon] Writing NODE_11769_length_255_cov_6.828358:1-255 changes to pilon.changes [pilon] Writing updated NODE_11769_length_255_cov_6.828358_pilon to pilon.fasta [pilon] Writing NODE_11770_length_254_cov_44.218045:1-254 changes to pilon.changes [pilon] Writing updated NODE_11770_length_254_cov_44.218045_pilon to pilon.fasta [pilon] Writing NODE_11771_length_254_cov_33.992481:1-254 changes to pilon.changes [pilon] Writing updated NODE_11771_length_254_cov_33.992481_pilon to pilon.fasta [pilon] Writing NODE_11772_length_254_cov_32.969925:1-254 changes to pilon.changes [pilon] Writing updated NODE_11772_length_254_cov_32.969925_pilon to pilon.fasta [pilon] Writing NODE_11773_length_254_cov_30.308271:1-254 changes to pilon.changes [pilon] Writing updated NODE_11773_length_254_cov_30.308271_pilon to pilon.fasta [pilon] Writing NODE_11774_length_254_cov_22.097744:1-254 changes to pilon.changes [pilon] Writing updated NODE_11774_length_254_cov_22.097744_pilon to pilon.fasta [pilon] Writing NODE_11775_length_254_cov_19.684211:1-254 changes to pilon.changes [pilon] Writing updated NODE_11775_length_254_cov_19.684211_pilon to pilon.fasta [pilon] Writing NODE_11776_length_254_cov_18.789474:1-254 changes to pilon.changes [pilon] Writing updated NODE_11776_length_254_cov_18.789474_pilon to pilon.fasta [pilon] Writing NODE_11777_length_254_cov_10.300752:1-254 changes to pilon.changes [pilon] Writing updated NODE_11777_length_254_cov_10.300752_pilon to pilon.fasta [pilon] Writing NODE_11778_length_254_cov_10.300752:1-254 changes to pilon.changes [pilon] Writing updated NODE_11778_length_254_cov_10.300752_pilon to pilon.fasta [pilon] Writing NODE_11779_length_254_cov_8.165414:1-254 changes to pilon.changes [pilon] Writing updated NODE_11779_length_254_cov_8.165414_pilon to pilon.fasta [pilon] Writing NODE_11780_length_254_cov_7.939850:1-254 changes to pilon.changes [pilon] Writing updated NODE_11780_length_254_cov_7.939850_pilon to pilon.fasta [pilon] Writing NODE_11781_length_254_cov_7.609023:1-254 changes to pilon.changes [pilon] Writing updated NODE_11781_length_254_cov_7.609023_pilon to pilon.fasta [pilon] Writing NODE_11782_length_254_cov_7.067669:1-254 changes to pilon.changes [pilon] Writing updated NODE_11782_length_254_cov_7.067669_pilon to pilon.fasta [pilon] Writing NODE_11783_length_254_cov_7.007519:1-254 changes to pilon.changes [pilon] Writing updated NODE_11783_length_254_cov_7.007519_pilon to pilon.fasta [pilon] Writing NODE_11784_length_253_cov_31.818182:1-253 changes to pilon.changes [pilon] Writing updated NODE_11784_length_253_cov_31.818182_pilon to pilon.fasta [pilon] Writing NODE_11785_length_253_cov_28.704545:1-253 changes to pilon.changes [pilon] Writing updated NODE_11785_length_253_cov_28.704545_pilon to pilon.fasta [pilon] Writing NODE_11786_length_253_cov_22.113636:1-253 changes to pilon.changes [pilon] Writing updated NODE_11786_length_253_cov_22.113636_pilon to pilon.fasta [pilon] Writing NODE_11787_length_253_cov_19.454545:1-253 changes to pilon.changes [pilon] Writing updated NODE_11787_length_253_cov_19.454545_pilon to pilon.fasta [pilon] Writing NODE_11788_length_253_cov_18.250000:1-253 changes to pilon.changes [pilon] Writing updated NODE_11788_length_253_cov_18.250000_pilon to pilon.fasta [pilon] Writing NODE_11789_length_253_cov_16.674242:1-253 changes to pilon.changes [pilon] Writing updated NODE_11789_length_253_cov_16.674242_pilon to pilon.fasta [pilon] Writing NODE_11790_length_253_cov_16.234848:1-253 changes to pilon.changes [pilon] Writing updated NODE_11790_length_253_cov_16.234848_pilon to pilon.fasta [pilon] Writing NODE_11791_length_253_cov_14.371212:1-253 changes to pilon.changes [pilon] Writing updated NODE_11791_length_253_cov_14.371212_pilon to pilon.fasta [pilon] Writing NODE_11792_length_253_cov_14.212121:1-253 changes to pilon.changes [pilon] Writing updated NODE_11792_length_253_cov_14.212121_pilon to pilon.fasta [pilon] Writing NODE_11793_length_253_cov_14.083333:1-253 changes to pilon.changes [pilon] Writing updated NODE_11793_length_253_cov_14.083333_pilon to pilon.fasta [pilon] Writing NODE_11794_length_253_cov_13.825758:1-253 changes to pilon.changes [pilon] Writing updated NODE_11794_length_253_cov_13.825758_pilon to pilon.fasta [pilon] Writing NODE_11795_length_253_cov_10.075758:1-253 changes to pilon.changes [pilon] Writing updated NODE_11795_length_253_cov_10.075758_pilon to pilon.fasta [pilon] Writing NODE_11796_length_253_cov_8.204545:1-253 changes to pilon.changes [pilon] Writing updated NODE_11796_length_253_cov_8.204545_pilon to pilon.fasta [pilon] Writing NODE_11797_length_253_cov_5.674242:1-253 changes to pilon.changes [pilon] Writing updated NODE_11797_length_253_cov_5.674242_pilon to pilon.fasta [pilon] Writing NODE_11798_length_252_cov_37.580153:1-252 changes to pilon.changes [pilon] Writing updated NODE_11798_length_252_cov_37.580153_pilon to pilon.fasta [pilon] Writing NODE_11799_length_252_cov_31.847328:1-252 changes to pilon.changes [pilon] Writing updated NODE_11799_length_252_cov_31.847328_pilon to pilon.fasta [pilon] Writing NODE_11800_length_252_cov_31.366412:1-252 changes to pilon.changes [pilon] Writing updated NODE_11800_length_252_cov_31.366412_pilon to pilon.fasta [pilon] Writing NODE_11801_length_252_cov_31.083969:1-252 changes to pilon.changes [pilon] Writing updated NODE_11801_length_252_cov_31.083969_pilon to pilon.fasta [pilon] Writing NODE_11802_length_252_cov_29.763359:1-252 changes to pilon.changes [pilon] Writing updated NODE_11802_length_252_cov_29.763359_pilon to pilon.fasta [pilon] Writing NODE_11803_length_252_cov_28.190840:1-252 changes to pilon.changes [pilon] Writing updated NODE_11803_length_252_cov_28.190840_pilon to pilon.fasta [pilon] Writing NODE_11804_length_252_cov_27.732824:1-252 changes to pilon.changes [pilon] Writing updated NODE_11804_length_252_cov_27.732824_pilon to pilon.fasta [pilon] Writing NODE_11805_length_252_cov_27.396947:1-252 changes to pilon.changes [pilon] Writing updated NODE_11805_length_252_cov_27.396947_pilon to pilon.fasta [pilon] Writing NODE_11806_length_252_cov_26.641221:1-252 changes to pilon.changes [pilon] Writing updated NODE_11806_length_252_cov_26.641221_pilon to pilon.fasta [pilon] Writing NODE_11807_length_252_cov_25.748092:1-252 changes to pilon.changes [pilon] Writing updated NODE_11807_length_252_cov_25.748092_pilon to pilon.fasta [pilon] Writing NODE_11808_length_252_cov_25.366412:1-252 changes to pilon.changes [pilon] Writing updated NODE_11808_length_252_cov_25.366412_pilon to pilon.fasta [pilon] Writing NODE_11809_length_252_cov_23.801527:1-252 changes to pilon.changes [pilon] Writing updated NODE_11809_length_252_cov_23.801527_pilon to pilon.fasta [pilon] Writing NODE_11810_length_252_cov_21.572519:1-252 changes to pilon.changes [pilon] Writing updated NODE_11810_length_252_cov_21.572519_pilon to pilon.fasta [pilon] Writing NODE_11811_length_252_cov_21.541985:1-252 changes to pilon.changes [pilon] Writing updated NODE_11811_length_252_cov_21.541985_pilon to pilon.fasta [pilon] Writing NODE_11812_length_252_cov_21.450382:1-252 changes to pilon.changes [pilon] Writing updated NODE_11812_length_252_cov_21.450382_pilon to pilon.fasta [pilon] Writing NODE_11813_length_252_cov_21.435115:1-252 changes to pilon.changes [pilon] Writing updated NODE_11813_length_252_cov_21.435115_pilon to pilon.fasta [pilon] Writing NODE_11814_length_252_cov_21.381679:1-252 changes to pilon.changes [pilon] Writing updated NODE_11814_length_252_cov_21.381679_pilon to pilon.fasta [pilon] Writing NODE_11815_length_252_cov_19.793893:1-252 changes to pilon.changes [pilon] Writing updated NODE_11815_length_252_cov_19.793893_pilon to pilon.fasta [pilon] Writing NODE_11816_length_252_cov_19.244275:1-252 changes to pilon.changes [pilon] Writing updated NODE_11816_length_252_cov_19.244275_pilon to pilon.fasta [pilon] Writing NODE_11817_length_252_cov_19.015267:1-252 changes to pilon.changes [pilon] Writing updated NODE_11817_length_252_cov_19.015267_pilon to pilon.fasta [pilon] Writing NODE_11818_length_252_cov_18.122137:1-252 changes to pilon.changes [pilon] Writing updated NODE_11818_length_252_cov_18.122137_pilon to pilon.fasta [pilon] Writing NODE_11819_length_252_cov_17.587786:1-252 changes to pilon.changes [pilon] Writing updated NODE_11819_length_252_cov_17.587786_pilon to pilon.fasta [pilon] Writing NODE_11820_length_252_cov_17.480916:1-252 changes to pilon.changes [pilon] Writing updated NODE_11820_length_252_cov_17.480916_pilon to pilon.fasta [pilon] Writing NODE_11821_length_252_cov_17.030534:1-252 changes to pilon.changes [pilon] Writing updated NODE_11821_length_252_cov_17.030534_pilon to pilon.fasta [pilon] Writing NODE_11822_length_252_cov_16.625954:1-252 changes to pilon.changes [pilon] Writing updated NODE_11822_length_252_cov_16.625954_pilon to pilon.fasta [pilon] Writing NODE_11823_length_252_cov_16.404580:1-252 changes to pilon.changes [pilon] Writing updated NODE_11823_length_252_cov_16.404580_pilon to pilon.fasta [pilon] Writing NODE_11824_length_252_cov_16.122137:1-252 changes to pilon.changes [pilon] Writing updated NODE_11824_length_252_cov_16.122137_pilon to pilon.fasta [pilon] Writing NODE_11825_length_252_cov_15.320611:1-252 changes to pilon.changes [pilon] Writing updated NODE_11825_length_252_cov_15.320611_pilon to pilon.fasta [pilon] Writing NODE_11826_length_252_cov_15.007634:1-252 changes to pilon.changes [pilon] Writing updated NODE_11826_length_252_cov_15.007634_pilon to pilon.fasta [pilon] Writing NODE_11827_length_252_cov_14.809160:1-252 changes to pilon.changes [pilon] Writing updated NODE_11827_length_252_cov_14.809160_pilon to pilon.fasta [pilon] Writing NODE_11828_length_252_cov_14.496183:1-252 changes to pilon.changes [pilon] Writing updated NODE_11828_length_252_cov_14.496183_pilon to pilon.fasta [pilon] Writing NODE_11829_length_252_cov_13.984733:1-252 changes to pilon.changes [pilon] Writing updated NODE_11829_length_252_cov_13.984733_pilon to pilon.fasta [pilon] Writing NODE_11830_length_252_cov_13.404580:1-252 changes to pilon.changes [pilon] Writing updated NODE_11830_length_252_cov_13.404580_pilon to pilon.fasta [pilon] Writing NODE_11831_length_252_cov_13.366412:1-252 changes to pilon.changes [pilon] Writing updated NODE_11831_length_252_cov_13.366412_pilon to pilon.fasta [pilon] Writing NODE_11832_length_252_cov_12.824427:1-252 changes to pilon.changes [pilon] Writing updated NODE_11832_length_252_cov_12.824427_pilon to pilon.fasta [pilon] Writing NODE_11833_length_252_cov_12.816794:1-252 changes to pilon.changes [pilon] Writing updated NODE_11833_length_252_cov_12.816794_pilon to pilon.fasta [pilon] Writing NODE_11834_length_252_cov_12.587786:1-252 changes to pilon.changes [pilon] Writing updated NODE_11834_length_252_cov_12.587786_pilon to pilon.fasta [pilon] Writing NODE_11835_length_252_cov_11.984733:1-252 changes to pilon.changes [pilon] Writing updated NODE_11835_length_252_cov_11.984733_pilon to pilon.fasta [pilon] Writing NODE_11836_length_252_cov_11.541985:1-252 changes to pilon.changes [pilon] Writing updated NODE_11836_length_252_cov_11.541985_pilon to pilon.fasta [pilon] Writing NODE_11837_length_252_cov_11.442748:1-252 changes to pilon.changes [pilon] Writing updated NODE_11837_length_252_cov_11.442748_pilon to pilon.fasta [pilon] Writing NODE_11838_length_252_cov_11.206107:1-252 changes to pilon.changes [pilon] Writing updated NODE_11838_length_252_cov_11.206107_pilon to pilon.fasta [pilon] Writing NODE_11839_length_252_cov_11.198473:1-252 changes to pilon.changes [pilon] Writing updated NODE_11839_length_252_cov_11.198473_pilon to pilon.fasta [pilon] Writing NODE_11840_length_252_cov_10.786260:1-252 changes to pilon.changes [pilon] Writing updated NODE_11840_length_252_cov_10.786260_pilon to pilon.fasta [pilon] Writing NODE_11841_length_252_cov_10.656489:1-252 changes to pilon.changes [pilon] Writing updated NODE_11841_length_252_cov_10.656489_pilon to pilon.fasta [pilon] Writing NODE_11842_length_252_cov_10.503817:1-252 changes to pilon.changes [pilon] Writing updated NODE_11842_length_252_cov_10.503817_pilon to pilon.fasta [pilon] Writing NODE_11843_length_252_cov_10.312977:1-252 changes to pilon.changes [pilon] Writing updated NODE_11843_length_252_cov_10.312977_pilon to pilon.fasta [pilon] Writing NODE_11844_length_252_cov_9.435115:1-252 changes to pilon.changes [pilon] Writing updated NODE_11844_length_252_cov_9.435115_pilon to pilon.fasta [pilon] Writing NODE_11845_length_252_cov_9.404580:1-252 changes to pilon.changes [pilon] Writing updated NODE_11845_length_252_cov_9.404580_pilon to pilon.fasta [pilon] Writing NODE_11846_length_252_cov_8.748092:1-252 changes to pilon.changes [pilon] Writing updated NODE_11846_length_252_cov_8.748092_pilon to pilon.fasta [pilon] Writing NODE_11847_length_252_cov_8.274809:1-252 changes to pilon.changes [pilon] Writing updated NODE_11847_length_252_cov_8.274809_pilon to pilon.fasta [pilon] Writing NODE_11848_length_252_cov_8.061069:1-252 changes to pilon.changes [pilon] Writing updated NODE_11848_length_252_cov_8.061069_pilon to pilon.fasta [pilon] Writing NODE_11849_length_252_cov_8.045802:1-252 changes to pilon.changes [pilon] Writing updated NODE_11849_length_252_cov_8.045802_pilon to pilon.fasta [pilon] Writing NODE_11850_length_252_cov_7.465649:1-252 changes to pilon.changes [pilon] Writing updated NODE_11850_length_252_cov_7.465649_pilon to pilon.fasta [pilon] Writing NODE_11851_length_252_cov_6.938931:1-252 changes to pilon.changes [pilon] Writing updated NODE_11851_length_252_cov_6.938931_pilon to pilon.fasta [pilon] Writing NODE_11852_length_252_cov_6.923664:1-252 changes to pilon.changes [pilon] Writing updated NODE_11852_length_252_cov_6.923664_pilon to pilon.fasta [pilon] Writing NODE_11853_length_252_cov_6.465649:1-252 changes to pilon.changes [pilon] Writing updated NODE_11853_length_252_cov_6.465649_pilon to pilon.fasta [pilon] Writing NODE_11854_length_252_cov_6.122137:1-252 changes to pilon.changes [pilon] Writing updated NODE_11854_length_252_cov_6.122137_pilon to pilon.fasta [pilon] Writing NODE_11855_length_251_cov_24.853846:1-251 changes to pilon.changes [pilon] Writing updated NODE_11855_length_251_cov_24.853846_pilon to pilon.fasta [pilon] Writing NODE_11856_length_251_cov_22.230769:1-251 changes to pilon.changes [pilon] Writing updated NODE_11856_length_251_cov_22.230769_pilon to pilon.fasta [pilon] Writing NODE_11857_length_251_cov_21.053846:1-251 changes to pilon.changes [pilon] Writing updated NODE_11857_length_251_cov_21.053846_pilon to pilon.fasta [pilon] Writing NODE_11858_length_251_cov_16.946154:1-251 changes to pilon.changes [pilon] Writing updated NODE_11858_length_251_cov_16.946154_pilon to pilon.fasta [pilon] Writing NODE_11859_length_251_cov_16.715385:1-251 changes to pilon.changes [pilon] Writing updated NODE_11859_length_251_cov_16.715385_pilon to pilon.fasta [pilon] Writing NODE_11860_length_251_cov_15.446154:1-251 changes to pilon.changes [pilon] Writing updated NODE_11860_length_251_cov_15.446154_pilon to pilon.fasta [pilon] Writing NODE_11861_length_251_cov_13.823077:1-251 changes to pilon.changes [pilon] Writing updated NODE_11861_length_251_cov_13.823077_pilon to pilon.fasta [pilon] Writing NODE_11862_length_251_cov_10.353846:1-251 changes to pilon.changes [pilon] Writing updated NODE_11862_length_251_cov_10.353846_pilon to pilon.fasta [pilon] Writing NODE_11863_length_250_cov_34.984496:1-250 changes to pilon.changes [pilon] Writing updated NODE_11863_length_250_cov_34.984496_pilon to pilon.fasta [pilon] Writing NODE_11864_length_250_cov_28.821705:1-250 changes to pilon.changes [pilon] Writing updated NODE_11864_length_250_cov_28.821705_pilon to pilon.fasta [pilon] Writing NODE_11865_length_250_cov_25.689922:1-250 changes to pilon.changes [pilon] Writing updated NODE_11865_length_250_cov_25.689922_pilon to pilon.fasta [pilon] Writing NODE_11866_length_250_cov_23.565891:1-250 changes to pilon.changes [pilon] Writing updated NODE_11866_length_250_cov_23.565891_pilon to pilon.fasta [pilon] Writing NODE_11867_length_250_cov_22.503876:1-250 changes to pilon.changes [pilon] Writing updated NODE_11867_length_250_cov_22.503876_pilon to pilon.fasta [pilon] Writing NODE_11868_length_250_cov_19.728682:1-250 changes to pilon.changes [pilon] Writing updated NODE_11868_length_250_cov_19.728682_pilon to pilon.fasta [pilon] Writing NODE_11869_length_250_cov_18.441860:1-250 changes to pilon.changes [pilon] Writing updated NODE_11869_length_250_cov_18.441860_pilon to pilon.fasta [pilon] Writing NODE_11870_length_250_cov_10.534884:1-250 changes to pilon.changes [pilon] Writing updated NODE_11870_length_250_cov_10.534884_pilon to pilon.fasta [pilon] Writing NODE_11871_length_250_cov_9.465116:1-250 changes to pilon.changes [pilon] Writing updated NODE_11871_length_250_cov_9.465116_pilon to pilon.fasta [pilon] Writing NODE_11872_length_250_cov_8.837209:1-250 changes to pilon.changes [pilon] Writing updated NODE_11872_length_250_cov_8.837209_pilon to pilon.fasta [pilon] Writing NODE_11873_length_250_cov_7.147287:1-250 changes to pilon.changes [pilon] Writing updated NODE_11873_length_250_cov_7.147287_pilon to pilon.fasta [pilon] Writing NODE_11874_length_250_cov_6.217054:1-250 changes to pilon.changes [pilon] Writing updated NODE_11874_length_250_cov_6.217054_pilon to pilon.fasta [pilon] Writing NODE_11875_length_250_cov_5.906977:1-250 changes to pilon.changes [pilon] Writing updated NODE_11875_length_250_cov_5.906977_pilon to pilon.fasta [pilon] Writing NODE_11876_length_250_cov_5.511628:1-250 changes to pilon.changes [pilon] Writing updated NODE_11876_length_250_cov_5.511628_pilon to pilon.fasta [pilon] Writing NODE_11877_length_249_cov_45.062500:1-249 changes to pilon.changes [pilon] Writing updated NODE_11877_length_249_cov_45.062500_pilon to pilon.fasta [pilon] Writing NODE_11878_length_249_cov_36.992188:1-249 changes to pilon.changes [pilon] Writing updated NODE_11878_length_249_cov_36.992188_pilon to pilon.fasta [pilon] Writing NODE_11879_length_249_cov_33.367188:1-249 changes to pilon.changes [pilon] Writing updated NODE_11879_length_249_cov_33.367188_pilon to pilon.fasta [pilon] Writing NODE_11880_length_249_cov_33.289062:1-249 changes to pilon.changes [pilon] Writing updated NODE_11880_length_249_cov_33.289062_pilon to pilon.fasta [pilon] Writing NODE_11881_length_249_cov_30.445312:1-249 changes to pilon.changes [pilon] Writing updated NODE_11881_length_249_cov_30.445312_pilon to pilon.fasta [pilon] Writing NODE_11882_length_249_cov_30.390625:1-249 changes to pilon.changes [pilon] Writing updated NODE_11882_length_249_cov_30.390625_pilon to pilon.fasta [pilon] Writing NODE_11883_length_249_cov_28.476562:1-249 changes to pilon.changes [pilon] Writing updated NODE_11883_length_249_cov_28.476562_pilon to pilon.fasta [pilon] Writing NODE_11884_length_249_cov_27.773438:1-249 changes to pilon.changes [pilon] Writing updated NODE_11884_length_249_cov_27.773438_pilon to pilon.fasta [pilon] Writing NODE_11885_length_249_cov_25.781250:1-249 changes to pilon.changes [pilon] Writing updated NODE_11885_length_249_cov_25.781250_pilon to pilon.fasta [pilon] Writing NODE_11886_length_249_cov_25.703125:1-249 changes to pilon.changes [pilon] Writing updated NODE_11886_length_249_cov_25.703125_pilon to pilon.fasta [pilon] Writing NODE_11887_length_249_cov_25.000000:1-249 changes to pilon.changes [pilon] Writing updated NODE_11887_length_249_cov_25.000000_pilon to pilon.fasta [pilon] Writing NODE_11888_length_249_cov_24.609375:1-249 changes to pilon.changes [pilon] Writing updated NODE_11888_length_249_cov_24.609375_pilon to pilon.fasta [pilon] Writing NODE_11889_length_249_cov_23.585938:1-249 changes to pilon.changes [pilon] Writing updated NODE_11889_length_249_cov_23.585938_pilon to pilon.fasta [pilon] Writing NODE_11890_length_249_cov_23.335938:1-249 changes to pilon.changes [pilon] Writing updated NODE_11890_length_249_cov_23.335938_pilon to pilon.fasta [pilon] Writing NODE_11891_length_249_cov_23.132812:1-249 changes to pilon.changes [pilon] Writing updated NODE_11891_length_249_cov_23.132812_pilon to pilon.fasta [pilon] Writing NODE_11892_length_249_cov_22.265625:1-249 changes to pilon.changes [pilon] Writing updated NODE_11892_length_249_cov_22.265625_pilon to pilon.fasta [pilon] Writing NODE_11893_length_249_cov_21.820312:1-249 changes to pilon.changes [pilon] Writing updated NODE_11893_length_249_cov_21.820312_pilon to pilon.fasta [pilon] Writing NODE_11894_length_249_cov_21.179688:1-249 changes to pilon.changes [pilon] Writing updated NODE_11894_length_249_cov_21.179688_pilon to pilon.fasta [pilon] Writing NODE_11895_length_249_cov_21.101562:1-249 changes to pilon.changes [pilon] Writing updated NODE_11895_length_249_cov_21.101562_pilon to pilon.fasta [pilon] Writing NODE_11896_length_249_cov_20.906250:1-249 changes to pilon.changes [pilon] Writing updated NODE_11896_length_249_cov_20.906250_pilon to pilon.fasta [pilon] Writing NODE_11897_length_249_cov_20.554688:1-249 changes to pilon.changes [pilon] Writing updated NODE_11897_length_249_cov_20.554688_pilon to pilon.fasta [pilon] Writing NODE_11898_length_249_cov_19.445312:1-249 changes to pilon.changes [pilon] Writing updated NODE_11898_length_249_cov_19.445312_pilon to pilon.fasta [pilon] Writing NODE_11899_length_249_cov_19.390625:1-249 changes to pilon.changes [pilon] Writing updated NODE_11899_length_249_cov_19.390625_pilon to pilon.fasta [pilon] Writing NODE_11900_length_249_cov_18.945312:1-249 changes to pilon.changes [pilon] Writing updated NODE_11900_length_249_cov_18.945312_pilon to pilon.fasta [pilon] Writing NODE_11901_length_249_cov_18.109375:1-249 changes to pilon.changes [pilon] Writing updated NODE_11901_length_249_cov_18.109375_pilon to pilon.fasta [pilon] Writing NODE_11902_length_249_cov_18.023438:1-249 changes to pilon.changes [pilon] Writing updated NODE_11902_length_249_cov_18.023438_pilon to pilon.fasta [pilon] Writing NODE_11903_length_249_cov_17.703125:1-249 changes to pilon.changes [pilon] Writing updated NODE_11903_length_249_cov_17.703125_pilon to pilon.fasta [pilon] Writing NODE_11904_length_249_cov_17.531250:1-249 changes to pilon.changes [pilon] Writing updated NODE_11904_length_249_cov_17.531250_pilon to pilon.fasta [pilon] Writing NODE_11905_length_249_cov_17.351562:1-249 changes to pilon.changes [pilon] Writing updated NODE_11905_length_249_cov_17.351562_pilon to pilon.fasta [pilon] Writing NODE_11906_length_249_cov_17.015625:1-249 changes to pilon.changes [pilon] Writing updated NODE_11906_length_249_cov_17.015625_pilon to pilon.fasta [pilon] Writing NODE_11907_length_249_cov_16.945312:1-249 changes to pilon.changes [pilon] Writing updated NODE_11907_length_249_cov_16.945312_pilon to pilon.fasta [pilon] Writing NODE_11908_length_249_cov_16.234375:1-249 changes to pilon.changes [pilon] Writing updated NODE_11908_length_249_cov_16.234375_pilon to pilon.fasta [pilon] Writing NODE_11909_length_249_cov_15.875000:1-249 changes to pilon.changes [pilon] Writing updated NODE_11909_length_249_cov_15.875000_pilon to pilon.fasta [pilon] Writing NODE_11910_length_249_cov_15.781250:1-249 changes to pilon.changes [pilon] Writing updated NODE_11910_length_249_cov_15.781250_pilon to pilon.fasta [pilon] Writing NODE_11911_length_249_cov_15.578125:1-249 changes to pilon.changes [pilon] Writing updated NODE_11911_length_249_cov_15.578125_pilon to pilon.fasta [pilon] Writing NODE_11912_length_249_cov_15.554688:1-249 changes to pilon.changes [pilon] Writing updated NODE_11912_length_249_cov_15.554688_pilon to pilon.fasta [pilon] Writing NODE_11913_length_249_cov_13.960938:1-249 changes to pilon.changes [pilon] Writing updated NODE_11913_length_249_cov_13.960938_pilon to pilon.fasta [pilon] Writing NODE_11914_length_249_cov_13.828125:1-249 changes to pilon.changes [pilon] Writing updated NODE_11914_length_249_cov_13.828125_pilon to pilon.fasta [pilon] Writing NODE_11915_length_249_cov_13.601562:1-249 changes to pilon.changes [pilon] Writing updated NODE_11915_length_249_cov_13.601562_pilon to pilon.fasta [pilon] Writing NODE_11916_length_249_cov_13.195312:1-249 changes to pilon.changes [pilon] Writing updated NODE_11916_length_249_cov_13.195312_pilon to pilon.fasta [pilon] Writing NODE_11917_length_249_cov_12.914062:1-249 changes to pilon.changes [pilon] Writing updated NODE_11917_length_249_cov_12.914062_pilon to pilon.fasta [pilon] Writing NODE_11918_length_249_cov_12.750000:1-249 changes to pilon.changes [pilon] Writing updated NODE_11918_length_249_cov_12.750000_pilon to pilon.fasta [pilon] Writing NODE_11919_length_249_cov_12.507812:1-249 changes to pilon.changes [pilon] Writing updated NODE_11919_length_249_cov_12.507812_pilon to pilon.fasta [pilon] Writing NODE_11920_length_249_cov_12.421875:1-249 changes to pilon.changes [pilon] Writing updated NODE_11920_length_249_cov_12.421875_pilon to pilon.fasta [pilon] Writing NODE_11921_length_249_cov_12.367188:1-249 changes to pilon.changes [pilon] Writing updated NODE_11921_length_249_cov_12.367188_pilon to pilon.fasta [pilon] Writing NODE_11922_length_249_cov_11.890625:1-249 changes to pilon.changes [pilon] Writing updated NODE_11922_length_249_cov_11.890625_pilon to pilon.fasta [pilon] Writing NODE_11923_length_249_cov_11.773438:1-249 changes to pilon.changes [pilon] Writing updated NODE_11923_length_249_cov_11.773438_pilon to pilon.fasta [pilon] Writing NODE_11924_length_249_cov_11.546875:1-249 changes to pilon.changes [pilon] Writing updated NODE_11924_length_249_cov_11.546875_pilon to pilon.fasta [pilon] Writing NODE_11925_length_249_cov_10.664062:1-249 changes to pilon.changes [pilon] Writing updated NODE_11925_length_249_cov_10.664062_pilon to pilon.fasta [pilon] Writing NODE_11926_length_249_cov_9.945312:1-249 changes to pilon.changes [pilon] Writing updated NODE_11926_length_249_cov_9.945312_pilon to pilon.fasta [pilon] Writing NODE_11927_length_249_cov_8.320312:1-249 changes to pilon.changes [pilon] Writing updated NODE_11927_length_249_cov_8.320312_pilon to pilon.fasta [pilon] Writing NODE_11928_length_249_cov_7.781250:1-249 changes to pilon.changes [pilon] Writing updated NODE_11928_length_249_cov_7.781250_pilon to pilon.fasta [pilon] Writing NODE_11929_length_249_cov_7.328125:1-249 changes to pilon.changes [pilon] Writing updated NODE_11929_length_249_cov_7.328125_pilon to pilon.fasta [pilon] Writing NODE_11930_length_249_cov_6.492188:1-249 changes to pilon.changes [pilon] Writing updated NODE_11930_length_249_cov_6.492188_pilon to pilon.fasta [pilon] Writing NODE_11931_length_249_cov_6.351562:1-249 changes to pilon.changes [pilon] Writing updated NODE_11931_length_249_cov_6.351562_pilon to pilon.fasta [pilon] Writing NODE_11932_length_248_cov_31.763780:1-248 changes to pilon.changes [pilon] Writing updated NODE_11932_length_248_cov_31.763780_pilon to pilon.fasta [pilon] Writing NODE_11933_length_248_cov_30.685039:1-248 changes to pilon.changes [pilon] Writing updated NODE_11933_length_248_cov_30.685039_pilon to pilon.fasta [pilon] Writing NODE_11934_length_248_cov_23.362205:1-248 changes to pilon.changes [pilon] Writing updated NODE_11934_length_248_cov_23.362205_pilon to pilon.fasta [pilon] Writing NODE_11935_length_248_cov_21.133858:1-248 changes to pilon.changes [pilon] Writing updated NODE_11935_length_248_cov_21.133858_pilon to pilon.fasta [pilon] Writing NODE_11936_length_248_cov_20.984252:1-248 changes to pilon.changes [pilon] Writing updated NODE_11936_length_248_cov_20.984252_pilon to pilon.fasta [pilon] Writing NODE_11937_length_248_cov_20.377953:1-248 changes to pilon.changes [pilon] Writing updated NODE_11937_length_248_cov_20.377953_pilon to pilon.fasta [pilon] Writing NODE_11938_length_248_cov_16.905512:1-248 changes to pilon.changes [pilon] Writing updated NODE_11938_length_248_cov_16.905512_pilon to pilon.fasta [pilon] Writing NODE_11939_length_248_cov_14.811024:1-248 changes to pilon.changes [pilon] Writing updated NODE_11939_length_248_cov_14.811024_pilon to pilon.fasta [pilon] Writing NODE_11940_length_248_cov_13.874016:1-248 changes to pilon.changes [pilon] Writing updated NODE_11940_length_248_cov_13.874016_pilon to pilon.fasta [pilon] Writing NODE_11941_length_248_cov_12.039370:1-248 changes to pilon.changes [pilon] Writing updated NODE_11941_length_248_cov_12.039370_pilon to pilon.fasta [pilon] Writing NODE_11942_length_248_cov_7.433071:1-248 changes to pilon.changes [pilon] Writing updated NODE_11942_length_248_cov_7.433071_pilon to pilon.fasta [pilon] Writing NODE_11943_length_248_cov_7.188976:1-248 changes to pilon.changes [pilon] Writing updated NODE_11943_length_248_cov_7.188976_pilon to pilon.fasta [pilon] Writing NODE_11944_length_248_cov_7.055118:1-248 changes to pilon.changes [pilon] Writing updated NODE_11944_length_248_cov_7.055118_pilon to pilon.fasta [pilon] Writing NODE_11945_length_247_cov_36.452381:1-247 changes to pilon.changes [pilon] Writing updated NODE_11945_length_247_cov_36.452381_pilon to pilon.fasta [pilon] Writing NODE_11946_length_247_cov_28.674603:1-247 changes to pilon.changes [pilon] Writing updated NODE_11946_length_247_cov_28.674603_pilon to pilon.fasta [pilon] Writing NODE_11947_length_247_cov_27.095238:1-247 changes to pilon.changes [pilon] Writing updated NODE_11947_length_247_cov_27.095238_pilon to pilon.fasta [pilon] Writing NODE_11948_length_247_cov_26.531746:1-247 changes to pilon.changes [pilon] Writing updated NODE_11948_length_247_cov_26.531746_pilon to pilon.fasta [pilon] Writing NODE_11949_length_247_cov_20.484127:1-247 changes to pilon.changes [pilon] Writing updated NODE_11949_length_247_cov_20.484127_pilon to pilon.fasta [pilon] Writing NODE_11950_length_247_cov_18.928571:1-247 changes to pilon.changes [pilon] Writing updated NODE_11950_length_247_cov_18.928571_pilon to pilon.fasta [pilon] Writing NODE_11951_length_247_cov_14.904762:1-247 changes to pilon.changes [pilon] Writing updated NODE_11951_length_247_cov_14.904762_pilon to pilon.fasta [pilon] Writing NODE_11952_length_247_cov_13.801587:1-247 changes to pilon.changes [pilon] Writing updated NODE_11952_length_247_cov_13.801587_pilon to pilon.fasta [pilon] Writing NODE_11953_length_247_cov_13.761905:1-247 changes to pilon.changes [pilon] Writing updated NODE_11953_length_247_cov_13.761905_pilon to pilon.fasta [pilon] Writing NODE_11954_length_247_cov_11.158730:1-247 changes to pilon.changes [pilon] Writing updated NODE_11954_length_247_cov_11.158730_pilon to pilon.fasta [pilon] Writing NODE_11955_length_247_cov_10.492063:1-247 changes to pilon.changes [pilon] Writing updated NODE_11955_length_247_cov_10.492063_pilon to pilon.fasta [pilon] Writing NODE_11956_length_247_cov_9.968254:1-247 changes to pilon.changes [pilon] Writing updated NODE_11956_length_247_cov_9.968254_pilon to pilon.fasta [pilon] Writing NODE_11957_length_247_cov_8.928571:1-247 changes to pilon.changes [pilon] Writing updated NODE_11957_length_247_cov_8.928571_pilon to pilon.fasta [pilon] Writing NODE_11958_length_247_cov_8.134921:1-247 changes to pilon.changes [pilon] Writing updated NODE_11958_length_247_cov_8.134921_pilon to pilon.fasta [pilon] Writing NODE_11959_length_247_cov_6.984127:1-247 changes to pilon.changes [pilon] Writing updated NODE_11959_length_247_cov_6.984127_pilon to pilon.fasta [pilon] Writing NODE_11960_length_246_cov_43.224000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11960_length_246_cov_43.224000_pilon to pilon.fasta [pilon] Writing NODE_11961_length_246_cov_37.576000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11961_length_246_cov_37.576000_pilon to pilon.fasta [pilon] Writing NODE_11962_length_246_cov_35.744000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11962_length_246_cov_35.744000_pilon to pilon.fasta [pilon] Writing NODE_11963_length_246_cov_35.736000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11963_length_246_cov_35.736000_pilon to pilon.fasta [pilon] Writing NODE_11964_length_246_cov_35.112000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11964_length_246_cov_35.112000_pilon to pilon.fasta [pilon] Writing NODE_11965_length_246_cov_35.016000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11965_length_246_cov_35.016000_pilon to pilon.fasta [pilon] Writing NODE_11966_length_246_cov_34.912000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11966_length_246_cov_34.912000_pilon to pilon.fasta [pilon] Writing NODE_11967_length_246_cov_33.744000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11967_length_246_cov_33.744000_pilon to pilon.fasta [pilon] Writing NODE_11968_length_246_cov_32.920000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11968_length_246_cov_32.920000_pilon to pilon.fasta [pilon] Writing NODE_11969_length_246_cov_32.704000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11969_length_246_cov_32.704000_pilon to pilon.fasta [pilon] Writing NODE_11970_length_246_cov_31.360000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11970_length_246_cov_31.360000_pilon to pilon.fasta [pilon] Writing NODE_11971_length_246_cov_30.840000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11971_length_246_cov_30.840000_pilon to pilon.fasta [pilon] Writing NODE_11972_length_246_cov_30.784000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11972_length_246_cov_30.784000_pilon to pilon.fasta [pilon] Writing NODE_11973_length_246_cov_30.736000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11973_length_246_cov_30.736000_pilon to pilon.fasta [pilon] Writing NODE_11974_length_246_cov_30.512000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11974_length_246_cov_30.512000_pilon to pilon.fasta [pilon] Writing NODE_11975_length_246_cov_29.984000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11975_length_246_cov_29.984000_pilon to pilon.fasta [pilon] Writing NODE_11976_length_246_cov_29.760000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11976_length_246_cov_29.760000_pilon to pilon.fasta [pilon] Writing NODE_11977_length_246_cov_28.264000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11977_length_246_cov_28.264000_pilon to pilon.fasta [pilon] Writing NODE_11978_length_246_cov_27.944000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11978_length_246_cov_27.944000_pilon to pilon.fasta [pilon] Writing NODE_11979_length_246_cov_27.576000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11979_length_246_cov_27.576000_pilon to pilon.fasta [pilon] Writing NODE_11980_length_246_cov_26.848000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11980_length_246_cov_26.848000_pilon to pilon.fasta [pilon] Writing NODE_11981_length_246_cov_26.808000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11981_length_246_cov_26.808000_pilon to pilon.fasta [pilon] Writing NODE_11982_length_246_cov_26.472000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11982_length_246_cov_26.472000_pilon to pilon.fasta [pilon] Writing NODE_11983_length_246_cov_25.952000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11983_length_246_cov_25.952000_pilon to pilon.fasta [pilon] Writing NODE_11984_length_246_cov_25.440000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11984_length_246_cov_25.440000_pilon to pilon.fasta [pilon] Writing NODE_11985_length_246_cov_24.984000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11985_length_246_cov_24.984000_pilon to pilon.fasta [pilon] Writing NODE_11986_length_246_cov_24.384000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11986_length_246_cov_24.384000_pilon to pilon.fasta [pilon] Writing NODE_11987_length_246_cov_24.160000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11987_length_246_cov_24.160000_pilon to pilon.fasta [pilon] Writing NODE_11988_length_246_cov_23.568000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11988_length_246_cov_23.568000_pilon to pilon.fasta [pilon] Writing NODE_11989_length_246_cov_23.256000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11989_length_246_cov_23.256000_pilon to pilon.fasta [pilon] Writing NODE_11990_length_246_cov_22.392000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11990_length_246_cov_22.392000_pilon to pilon.fasta [pilon] Writing NODE_11991_length_246_cov_21.680000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11991_length_246_cov_21.680000_pilon to pilon.fasta [pilon] Writing NODE_11992_length_246_cov_21.504000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11992_length_246_cov_21.504000_pilon to pilon.fasta [pilon] Writing NODE_11993_length_246_cov_20.208000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11993_length_246_cov_20.208000_pilon to pilon.fasta [pilon] Writing NODE_11994_length_246_cov_20.184000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11994_length_246_cov_20.184000_pilon to pilon.fasta [pilon] Writing NODE_11995_length_246_cov_20.088000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11995_length_246_cov_20.088000_pilon to pilon.fasta [pilon] Writing NODE_11996_length_246_cov_19.840000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11996_length_246_cov_19.840000_pilon to pilon.fasta [pilon] Writing NODE_11997_length_246_cov_19.744000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11997_length_246_cov_19.744000_pilon to pilon.fasta [pilon] Writing NODE_11998_length_246_cov_19.736000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11998_length_246_cov_19.736000_pilon to pilon.fasta [pilon] Writing NODE_11999_length_246_cov_18.776000:1-246 changes to pilon.changes [pilon] Writing updated NODE_11999_length_246_cov_18.776000_pilon to pilon.fasta [pilon] Writing NODE_12000_length_246_cov_18.560000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12000_length_246_cov_18.560000_pilon to pilon.fasta [pilon] Writing NODE_12001_length_246_cov_18.152000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12001_length_246_cov_18.152000_pilon to pilon.fasta [pilon] Writing NODE_12002_length_246_cov_17.920000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12002_length_246_cov_17.920000_pilon to pilon.fasta [pilon] Writing NODE_12003_length_246_cov_17.816000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12003_length_246_cov_17.816000_pilon to pilon.fasta [pilon] Writing NODE_12004_length_246_cov_17.576000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12004_length_246_cov_17.576000_pilon to pilon.fasta [pilon] Writing NODE_12005_length_246_cov_17.360000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12005_length_246_cov_17.360000_pilon to pilon.fasta [pilon] Writing NODE_12006_length_246_cov_17.008000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12006_length_246_cov_17.008000_pilon to pilon.fasta [pilon] Writing NODE_12007_length_246_cov_16.680000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12007_length_246_cov_16.680000_pilon to pilon.fasta [pilon] Writing NODE_12008_length_246_cov_16.536000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12008_length_246_cov_16.536000_pilon to pilon.fasta [pilon] Writing NODE_12009_length_246_cov_16.232000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12009_length_246_cov_16.232000_pilon to pilon.fasta [pilon] Writing NODE_12010_length_246_cov_16.008000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12010_length_246_cov_16.008000_pilon to pilon.fasta [pilon] Writing NODE_12011_length_246_cov_15.136000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12011_length_246_cov_15.136000_pilon to pilon.fasta [pilon] Writing NODE_12012_length_246_cov_14.760000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12012_length_246_cov_14.760000_pilon to pilon.fasta [pilon] Writing NODE_12013_length_246_cov_14.728000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12013_length_246_cov_14.728000_pilon to pilon.fasta [pilon] Writing NODE_12014_length_246_cov_14.496000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12014_length_246_cov_14.496000_pilon to pilon.fasta [pilon] Writing NODE_12015_length_246_cov_14.344000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12015_length_246_cov_14.344000_pilon to pilon.fasta [pilon] Writing NODE_12016_length_246_cov_13.880000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12016_length_246_cov_13.880000_pilon to pilon.fasta [pilon] Writing NODE_12017_length_246_cov_13.744000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12017_length_246_cov_13.744000_pilon to pilon.fasta [pilon] Writing NODE_12018_length_246_cov_13.240000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12018_length_246_cov_13.240000_pilon to pilon.fasta [pilon] Writing NODE_12019_length_246_cov_12.912000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12019_length_246_cov_12.912000_pilon to pilon.fasta [pilon] Writing NODE_12020_length_246_cov_12.736000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12020_length_246_cov_12.736000_pilon to pilon.fasta [pilon] Writing NODE_12021_length_246_cov_12.632000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12021_length_246_cov_12.632000_pilon to pilon.fasta [pilon] Writing NODE_12022_length_246_cov_11.888000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12022_length_246_cov_11.888000_pilon to pilon.fasta [pilon] Writing NODE_12023_length_246_cov_11.744000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12023_length_246_cov_11.744000_pilon to pilon.fasta [pilon] Writing NODE_12024_length_246_cov_11.648000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12024_length_246_cov_11.648000_pilon to pilon.fasta [pilon] Writing NODE_12025_length_246_cov_11.432000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12025_length_246_cov_11.432000_pilon to pilon.fasta [pilon] Writing NODE_12026_length_246_cov_11.352000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12026_length_246_cov_11.352000_pilon to pilon.fasta [pilon] Writing NODE_12027_length_246_cov_11.200000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12027_length_246_cov_11.200000_pilon to pilon.fasta [pilon] Writing NODE_12028_length_246_cov_10.824000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12028_length_246_cov_10.824000_pilon to pilon.fasta [pilon] Writing NODE_12029_length_246_cov_10.568000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12029_length_246_cov_10.568000_pilon to pilon.fasta [pilon] Writing NODE_12030_length_246_cov_10.440000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12030_length_246_cov_10.440000_pilon to pilon.fasta [pilon] Writing NODE_12031_length_246_cov_10.424000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12031_length_246_cov_10.424000_pilon to pilon.fasta [pilon] Writing NODE_12032_length_246_cov_10.360000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12032_length_246_cov_10.360000_pilon to pilon.fasta [pilon] Writing NODE_12033_length_246_cov_10.248000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12033_length_246_cov_10.248000_pilon to pilon.fasta [pilon] Writing NODE_12034_length_246_cov_9.928000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12034_length_246_cov_9.928000_pilon to pilon.fasta [pilon] Writing NODE_12035_length_246_cov_9.328000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12035_length_246_cov_9.328000_pilon to pilon.fasta [pilon] Writing NODE_12036_length_246_cov_9.176000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12036_length_246_cov_9.176000_pilon to pilon.fasta [pilon] Writing NODE_12037_length_246_cov_9.024000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12037_length_246_cov_9.024000_pilon to pilon.fasta [pilon] Writing NODE_12038_length_246_cov_8.240000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12038_length_246_cov_8.240000_pilon to pilon.fasta [pilon] Writing NODE_12039_length_246_cov_8.104000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12039_length_246_cov_8.104000_pilon to pilon.fasta [pilon] Writing NODE_12040_length_246_cov_8.072000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12040_length_246_cov_8.072000_pilon to pilon.fasta [pilon] Writing NODE_12041_length_246_cov_7.592000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12041_length_246_cov_7.592000_pilon to pilon.fasta [pilon] Writing NODE_12042_length_246_cov_7.376000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12042_length_246_cov_7.376000_pilon to pilon.fasta [pilon] Writing NODE_12043_length_246_cov_7.272000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12043_length_246_cov_7.272000_pilon to pilon.fasta [pilon] Writing NODE_12044_length_246_cov_7.064000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12044_length_246_cov_7.064000_pilon to pilon.fasta [pilon] Writing NODE_12045_length_246_cov_6.784000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12045_length_246_cov_6.784000_pilon to pilon.fasta [pilon] Writing NODE_12046_length_246_cov_6.672000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12046_length_246_cov_6.672000_pilon to pilon.fasta [pilon] Writing NODE_12047_length_246_cov_6.616000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12047_length_246_cov_6.616000_pilon to pilon.fasta [pilon] Writing NODE_12048_length_246_cov_5.264000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12048_length_246_cov_5.264000_pilon to pilon.fasta [pilon] Writing NODE_12049_length_246_cov_5.160000:1-246 changes to pilon.changes [pilon] Writing updated NODE_12049_length_246_cov_5.160000_pilon to pilon.fasta [pilon] Writing NODE_12050_length_245_cov_42.483871:1-245 changes to pilon.changes [pilon] Writing updated NODE_12050_length_245_cov_42.483871_pilon to pilon.fasta [pilon] Writing NODE_12051_length_245_cov_34.967742:1-245 changes to pilon.changes [pilon] Writing updated NODE_12051_length_245_cov_34.967742_pilon to pilon.fasta [pilon] Writing NODE_12052_length_245_cov_30.830645:1-245 changes to pilon.changes [pilon] Writing updated NODE_12052_length_245_cov_30.830645_pilon to pilon.fasta [pilon] Writing NODE_12053_length_245_cov_27.588710:1-245 changes to pilon.changes [pilon] Writing updated NODE_12053_length_245_cov_27.588710_pilon to pilon.fasta [pilon] Writing NODE_12054_length_245_cov_26.596774:1-245 changes to pilon.changes [pilon] Writing updated NODE_12054_length_245_cov_26.596774_pilon to pilon.fasta [pilon] Writing NODE_12055_length_245_cov_24.701613:1-245 changes to pilon.changes [pilon] Writing updated NODE_12055_length_245_cov_24.701613_pilon to pilon.fasta [pilon] Writing NODE_12056_length_245_cov_24.548387:1-245 changes to pilon.changes [pilon] Writing updated NODE_12056_length_245_cov_24.548387_pilon to pilon.fasta [pilon] Writing NODE_12057_length_245_cov_22.709677:1-245 changes to pilon.changes [pilon] Writing updated NODE_12057_length_245_cov_22.709677_pilon to pilon.fasta [pilon] Writing NODE_12058_length_245_cov_22.201613:1-245 changes to pilon.changes [pilon] Writing updated NODE_12058_length_245_cov_22.201613_pilon to pilon.fasta [pilon] Writing NODE_12059_length_245_cov_21.790323:1-245 changes to pilon.changes [pilon] Writing updated NODE_12059_length_245_cov_21.790323_pilon to pilon.fasta [pilon] Writing NODE_12060_length_245_cov_21.266129:1-245 changes to pilon.changes [pilon] Writing updated NODE_12060_length_245_cov_21.266129_pilon to pilon.fasta [pilon] Writing NODE_12061_length_245_cov_20.814516:1-245 changes to pilon.changes [pilon] Writing updated NODE_12061_length_245_cov_20.814516_pilon to pilon.fasta [pilon] Writing NODE_12062_length_245_cov_20.709677:1-245 changes to pilon.changes [pilon] Writing updated NODE_12062_length_245_cov_20.709677_pilon to pilon.fasta [pilon] Writing NODE_12063_length_245_cov_20.338710:1-245 changes to pilon.changes [pilon] Writing updated NODE_12063_length_245_cov_20.338710_pilon to pilon.fasta [pilon] Writing NODE_12064_length_245_cov_17.790323:1-245 changes to pilon.changes [pilon] Writing updated NODE_12064_length_245_cov_17.790323_pilon to pilon.fasta [pilon] Writing NODE_12065_length_245_cov_17.314516:1-245 changes to pilon.changes [pilon] Writing updated NODE_12065_length_245_cov_17.314516_pilon to pilon.fasta [pilon] Writing NODE_12066_length_245_cov_15.451613:1-245 changes to pilon.changes [pilon] Writing updated NODE_12066_length_245_cov_15.451613_pilon to pilon.fasta [pilon] Writing NODE_12067_length_245_cov_13.451613:1-245 changes to pilon.changes [pilon] Writing updated NODE_12067_length_245_cov_13.451613_pilon to pilon.fasta [pilon] Writing NODE_12068_length_245_cov_9.846774:1-245 changes to pilon.changes [pilon] Writing updated NODE_12068_length_245_cov_9.846774_pilon to pilon.fasta [pilon] Writing NODE_12069_length_245_cov_8.951613:1-245 changes to pilon.changes [pilon] Writing updated NODE_12069_length_245_cov_8.951613_pilon to pilon.fasta [pilon] Writing NODE_12070_length_245_cov_8.919355:1-245 changes to pilon.changes [pilon] Writing updated NODE_12070_length_245_cov_8.919355_pilon to pilon.fasta [pilon] Writing NODE_12071_length_245_cov_7.838710:1-245 changes to pilon.changes [pilon] Writing updated NODE_12071_length_245_cov_7.838710_pilon to pilon.fasta [pilon] Writing NODE_12072_length_244_cov_36.569106:1-244 changes to pilon.changes [pilon] Writing updated NODE_12072_length_244_cov_36.569106_pilon to pilon.fasta [pilon] Writing NODE_12073_length_244_cov_35.113821:1-244 changes to pilon.changes [pilon] Writing updated NODE_12073_length_244_cov_35.113821_pilon to pilon.fasta [pilon] Writing NODE_12074_length_244_cov_34.325203:1-244 changes to pilon.changes [pilon] Writing updated NODE_12074_length_244_cov_34.325203_pilon to pilon.fasta [pilon] Writing NODE_12075_length_244_cov_29.048780:1-244 changes to pilon.changes [pilon] Writing updated NODE_12075_length_244_cov_29.048780_pilon to pilon.fasta [pilon] Writing NODE_12076_length_244_cov_28.146341:1-244 changes to pilon.changes [pilon] Writing updated NODE_12076_length_244_cov_28.146341_pilon to pilon.fasta [pilon] Writing NODE_12077_length_244_cov_26.130081:1-244 changes to pilon.changes [pilon] Writing updated NODE_12077_length_244_cov_26.130081_pilon to pilon.fasta [pilon] Writing NODE_12078_length_244_cov_25.780488:1-244 changes to pilon.changes [pilon] Writing updated NODE_12078_length_244_cov_25.780488_pilon to pilon.fasta [pilon] Writing NODE_12079_length_244_cov_22.252033:1-244 changes to pilon.changes [pilon] Writing updated NODE_12079_length_244_cov_22.252033_pilon to pilon.fasta [pilon] Writing NODE_12080_length_244_cov_21.991870:1-244 changes to pilon.changes [pilon] Writing updated NODE_12080_length_244_cov_21.991870_pilon to pilon.fasta [pilon] Writing NODE_12081_length_244_cov_20.780488:1-244 changes to pilon.changes [pilon] Writing updated NODE_12081_length_244_cov_20.780488_pilon to pilon.fasta [pilon] Writing NODE_12082_length_244_cov_20.048780:1-244 changes to pilon.changes [pilon] Writing updated NODE_12082_length_244_cov_20.048780_pilon to pilon.fasta [pilon] Writing NODE_12083_length_244_cov_19.430894:1-244 changes to pilon.changes [pilon] Writing updated NODE_12083_length_244_cov_19.430894_pilon to pilon.fasta [pilon] Writing NODE_12084_length_244_cov_19.430894:1-244 changes to pilon.changes [pilon] Writing updated NODE_12084_length_244_cov_19.430894_pilon to pilon.fasta [pilon] Writing NODE_12085_length_244_cov_19.373984:1-244 changes to pilon.changes [pilon] Writing updated NODE_12085_length_244_cov_19.373984_pilon to pilon.fasta [pilon] Writing NODE_12086_length_244_cov_16.821138:1-244 changes to pilon.changes [pilon] Writing updated NODE_12086_length_244_cov_16.821138_pilon to pilon.fasta [pilon] Writing NODE_12087_length_244_cov_15.959350:1-244 changes to pilon.changes [pilon] Writing updated NODE_12087_length_244_cov_15.959350_pilon to pilon.fasta [pilon] Writing NODE_12088_length_244_cov_15.731707:1-244 changes to pilon.changes [pilon] Writing updated NODE_12088_length_244_cov_15.731707_pilon to pilon.fasta [pilon] Writing NODE_12089_length_244_cov_15.178862:1-244 changes to pilon.changes [pilon] Writing updated NODE_12089_length_244_cov_15.178862_pilon to pilon.fasta [pilon] Writing NODE_12090_length_244_cov_14.577236:1-244 changes to pilon.changes [pilon] Writing updated NODE_12090_length_244_cov_14.577236_pilon to pilon.fasta [pilon] Writing NODE_12091_length_244_cov_13.682927:1-244 changes to pilon.changes [pilon] Writing updated NODE_12091_length_244_cov_13.682927_pilon to pilon.fasta [pilon] Writing NODE_12092_length_244_cov_13.097561:1-244 changes to pilon.changes [pilon] Writing updated NODE_12092_length_244_cov_13.097561_pilon to pilon.fasta [pilon] Writing NODE_12093_length_244_cov_12.626016:1-244 changes to pilon.changes [pilon] Writing updated NODE_12093_length_244_cov_12.626016_pilon to pilon.fasta [pilon] Writing NODE_12094_length_244_cov_11.934959:1-244 changes to pilon.changes [pilon] Writing updated NODE_12094_length_244_cov_11.934959_pilon to pilon.fasta [pilon] Writing NODE_12095_length_244_cov_11.317073:1-244 changes to pilon.changes [pilon] Writing updated NODE_12095_length_244_cov_11.317073_pilon to pilon.fasta [pilon] Writing NODE_12096_length_244_cov_9.552846:1-244 changes to pilon.changes [pilon] Writing updated NODE_12096_length_244_cov_9.552846_pilon to pilon.fasta [pilon] Writing NODE_12097_length_244_cov_9.398374:1-244 changes to pilon.changes [pilon] Writing updated NODE_12097_length_244_cov_9.398374_pilon to pilon.fasta [pilon] Writing NODE_12098_length_244_cov_9.268293:1-244 changes to pilon.changes [pilon] Writing updated NODE_12098_length_244_cov_9.268293_pilon to pilon.fasta [pilon] Writing NODE_12099_length_244_cov_7.544715:1-244 changes to pilon.changes [pilon] Writing updated NODE_12099_length_244_cov_7.544715_pilon to pilon.fasta [pilon] Writing NODE_12100_length_244_cov_7.512195:1-244 changes to pilon.changes [pilon] Writing updated NODE_12100_length_244_cov_7.512195_pilon to pilon.fasta [pilon] Writing NODE_12101_length_244_cov_5.650407:1-244 changes to pilon.changes [pilon] Writing updated NODE_12101_length_244_cov_5.650407_pilon to pilon.fasta [pilon] Writing NODE_12102_length_243_cov_51.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12102_length_243_cov_51.770492_pilon to pilon.fasta [pilon] Writing NODE_12103_length_243_cov_51.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12103_length_243_cov_51.491803_pilon to pilon.fasta [pilon] Writing NODE_12104_length_243_cov_51.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_12104_length_243_cov_51.090164_pilon to pilon.fasta [pilon] Writing NODE_12105_length_243_cov_48.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12105_length_243_cov_48.016393_pilon to pilon.fasta [pilon] Writing NODE_12106_length_243_cov_47.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12106_length_243_cov_47.188525_pilon to pilon.fasta [pilon] Writing NODE_12107_length_243_cov_46.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12107_length_243_cov_46.877049_pilon to pilon.fasta [pilon] Writing NODE_12108_length_243_cov_46.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12108_length_243_cov_46.868852_pilon to pilon.fasta [pilon] Writing NODE_12109_length_243_cov_46.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12109_length_243_cov_46.721311_pilon to pilon.fasta [pilon] Writing NODE_12110_length_243_cov_45.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12110_length_243_cov_45.893443_pilon to pilon.fasta [pilon] Writing NODE_12111_length_243_cov_45.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12111_length_243_cov_45.786885_pilon to pilon.fasta [pilon] Writing NODE_12112_length_243_cov_45.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12112_length_243_cov_45.663934_pilon to pilon.fasta [pilon] Writing NODE_12113_length_243_cov_45.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12113_length_243_cov_45.393443_pilon to pilon.fasta [pilon] Writing NODE_12114_length_243_cov_45.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12114_length_243_cov_45.360656_pilon to pilon.fasta [pilon] Writing NODE_12115_length_243_cov_44.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12115_length_243_cov_44.983607_pilon to pilon.fasta [pilon] Writing NODE_12116_length_243_cov_44.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12116_length_243_cov_44.622951_pilon to pilon.fasta [pilon] Writing NODE_12117_length_243_cov_44.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12117_length_243_cov_44.540984_pilon to pilon.fasta [pilon] Writing NODE_12118_length_243_cov_44.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12118_length_243_cov_44.418033_pilon to pilon.fasta [pilon] Writing NODE_12119_length_243_cov_44.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12119_length_243_cov_44.155738_pilon to pilon.fasta [pilon] Writing NODE_12120_length_243_cov_43.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12120_length_243_cov_43.729508_pilon to pilon.fasta [pilon] Writing NODE_12121_length_243_cov_43.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12121_length_243_cov_43.450820_pilon to pilon.fasta [pilon] Writing NODE_12122_length_243_cov_43.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12122_length_243_cov_43.418033_pilon to pilon.fasta [pilon] Writing NODE_12123_length_243_cov_43.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12123_length_243_cov_43.163934_pilon to pilon.fasta [pilon] Writing NODE_12124_length_243_cov_42.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_12124_length_243_cov_42.967213_pilon to pilon.fasta [pilon] Writing NODE_12125_length_243_cov_42.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12125_length_243_cov_42.672131_pilon to pilon.fasta [pilon] Writing NODE_12126_length_243_cov_42.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12126_length_243_cov_42.377049_pilon to pilon.fasta [pilon] Writing NODE_12127_length_243_cov_42.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12127_length_243_cov_42.368852_pilon to pilon.fasta [pilon] Writing NODE_12128_length_243_cov_42.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12128_length_243_cov_42.106557_pilon to pilon.fasta [pilon] Writing NODE_12129_length_243_cov_41.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12129_length_243_cov_41.983607_pilon to pilon.fasta [pilon] Writing NODE_12130_length_243_cov_41.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_12130_length_243_cov_41.737705_pilon to pilon.fasta [pilon] Writing NODE_12131_length_243_cov_41.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12131_length_243_cov_41.540984_pilon to pilon.fasta [pilon] Writing NODE_12132_length_243_cov_41.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12132_length_243_cov_41.516393_pilon to pilon.fasta [pilon] Writing NODE_12133_length_243_cov_41.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_12133_length_243_cov_41.344262_pilon to pilon.fasta [pilon] Writing NODE_12134_length_243_cov_41.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12134_length_243_cov_41.311475_pilon to pilon.fasta [pilon] Writing NODE_12135_length_243_cov_40.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12135_length_243_cov_40.918033_pilon to pilon.fasta [pilon] Writing NODE_12136_length_243_cov_40.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12136_length_243_cov_40.868852_pilon to pilon.fasta [pilon] Writing NODE_12137_length_243_cov_40.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12137_length_243_cov_40.778689_pilon to pilon.fasta [pilon] Writing NODE_12138_length_243_cov_40.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12138_length_243_cov_40.500000_pilon to pilon.fasta [pilon] Writing NODE_12139_length_243_cov_40.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12139_length_243_cov_40.475410_pilon to pilon.fasta [pilon] Writing NODE_12140_length_243_cov_40.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_12140_length_243_cov_40.467213_pilon to pilon.fasta [pilon] Writing NODE_12141_length_243_cov_40.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12141_length_243_cov_40.286885_pilon to pilon.fasta [pilon] Writing NODE_12142_length_243_cov_40.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12142_length_243_cov_40.270492_pilon to pilon.fasta [pilon] Writing NODE_12143_length_243_cov_40.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12143_length_243_cov_40.163934_pilon to pilon.fasta [pilon] Writing NODE_12144_length_243_cov_39.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12144_length_243_cov_39.893443_pilon to pilon.fasta [pilon] Writing NODE_12145_length_243_cov_39.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12145_length_243_cov_39.680328_pilon to pilon.fasta [pilon] Writing NODE_12146_length_243_cov_39.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12146_length_243_cov_39.459016_pilon to pilon.fasta [pilon] Writing NODE_12147_length_243_cov_39.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_12147_length_243_cov_39.426230_pilon to pilon.fasta [pilon] Writing NODE_12148_length_243_cov_39.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12148_length_243_cov_39.368852_pilon to pilon.fasta [pilon] Writing NODE_12149_length_243_cov_39.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_12149_length_243_cov_39.344262_pilon to pilon.fasta [pilon] Writing NODE_12150_length_243_cov_39.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_12150_length_243_cov_39.237705_pilon to pilon.fasta [pilon] Writing NODE_12151_length_243_cov_39.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12151_length_243_cov_39.172131_pilon to pilon.fasta [pilon] Writing NODE_12152_length_243_cov_39.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12152_length_243_cov_39.155738_pilon to pilon.fasta [pilon] Writing NODE_12153_length_243_cov_39.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12153_length_243_cov_39.139344_pilon to pilon.fasta [pilon] Writing NODE_12154_length_243_cov_39.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12154_length_243_cov_39.106557_pilon to pilon.fasta [pilon] Writing NODE_12155_length_243_cov_38.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12155_length_243_cov_38.983607_pilon to pilon.fasta [pilon] Writing NODE_12156_length_243_cov_38.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12156_length_243_cov_38.975410_pilon to pilon.fasta [pilon] Writing NODE_12157_length_243_cov_38.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12157_length_243_cov_38.918033_pilon to pilon.fasta [pilon] Writing NODE_12158_length_243_cov_38.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12158_length_243_cov_38.901639_pilon to pilon.fasta [pilon] Writing NODE_12159_length_243_cov_38.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12159_length_243_cov_38.836066_pilon to pilon.fasta [pilon] Writing NODE_12160_length_243_cov_38.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12160_length_243_cov_38.795082_pilon to pilon.fasta [pilon] Writing NODE_12161_length_243_cov_38.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12161_length_243_cov_38.762295_pilon to pilon.fasta [pilon] Writing NODE_12162_length_243_cov_38.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12162_length_243_cov_38.704918_pilon to pilon.fasta [pilon] Writing NODE_12163_length_243_cov_38.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12163_length_243_cov_38.655738_pilon to pilon.fasta [pilon] Writing NODE_12164_length_243_cov_38.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12164_length_243_cov_38.631148_pilon to pilon.fasta [pilon] Writing NODE_12165_length_243_cov_38.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_12165_length_243_cov_38.352459_pilon to pilon.fasta [pilon] Writing NODE_12166_length_243_cov_38.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12166_length_243_cov_38.336066_pilon to pilon.fasta [pilon] Writing NODE_12167_length_243_cov_38.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12167_length_243_cov_38.319672_pilon to pilon.fasta [pilon] Writing NODE_12168_length_243_cov_38.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12168_length_243_cov_38.204918_pilon to pilon.fasta [pilon] Writing NODE_12169_length_243_cov_38.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12169_length_243_cov_38.155738_pilon to pilon.fasta [pilon] Writing NODE_12170_length_243_cov_38.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12170_length_243_cov_38.139344_pilon to pilon.fasta [pilon] Writing NODE_12171_length_243_cov_37.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12171_length_243_cov_37.950820_pilon to pilon.fasta [pilon] Writing NODE_12172_length_243_cov_37.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12172_length_243_cov_37.934426_pilon to pilon.fasta [pilon] Writing NODE_12173_length_243_cov_37.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12173_length_243_cov_37.909836_pilon to pilon.fasta [pilon] Writing NODE_12174_length_243_cov_37.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12174_length_243_cov_37.729508_pilon to pilon.fasta [pilon] Writing NODE_12175_length_243_cov_37.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12175_length_243_cov_37.721311_pilon to pilon.fasta [pilon] Writing NODE_12176_length_243_cov_37.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12176_length_243_cov_37.639344_pilon to pilon.fasta [pilon] Writing NODE_12177_length_243_cov_37.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_12177_length_243_cov_37.590164_pilon to pilon.fasta [pilon] Writing NODE_12178_length_243_cov_37.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12178_length_243_cov_37.557377_pilon to pilon.fasta [pilon] Writing NODE_12179_length_243_cov_37.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12179_length_243_cov_37.557377_pilon to pilon.fasta [pilon] Writing NODE_12180_length_243_cov_37.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12180_length_243_cov_37.532787_pilon to pilon.fasta [pilon] Writing NODE_12181_length_243_cov_37.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12181_length_243_cov_37.491803_pilon to pilon.fasta [pilon] Writing NODE_12182_length_243_cov_37.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12182_length_243_cov_37.459016_pilon to pilon.fasta [pilon] Writing NODE_12183_length_243_cov_37.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12183_length_243_cov_37.393443_pilon to pilon.fasta [pilon] Writing NODE_12184_length_243_cov_37.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_12184_length_243_cov_37.352459_pilon to pilon.fasta [pilon] Writing NODE_12185_length_243_cov_37.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12185_length_243_cov_37.278689_pilon to pilon.fasta [pilon] Writing NODE_12186_length_243_cov_37.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12186_length_243_cov_37.278689_pilon to pilon.fasta [pilon] Writing NODE_12187_length_243_cov_37.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12187_length_243_cov_37.245902_pilon to pilon.fasta [pilon] Writing NODE_12188_length_243_cov_37.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12188_length_243_cov_37.213115_pilon to pilon.fasta [pilon] Writing NODE_12189_length_243_cov_37.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12189_length_243_cov_37.204918_pilon to pilon.fasta [pilon] Writing NODE_12190_length_243_cov_37.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12190_length_243_cov_37.131148_pilon to pilon.fasta [pilon] Writing NODE_12191_length_243_cov_37.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12191_length_243_cov_37.081967_pilon to pilon.fasta [pilon] Writing NODE_12192_length_243_cov_37.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12192_length_243_cov_37.049180_pilon to pilon.fasta [pilon] Writing NODE_12193_length_243_cov_37.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12193_length_243_cov_37.024590_pilon to pilon.fasta [pilon] Writing NODE_12194_length_243_cov_37.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12194_length_243_cov_37.008197_pilon to pilon.fasta [pilon] Writing NODE_12195_length_243_cov_36.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12195_length_243_cov_36.983607_pilon to pilon.fasta [pilon] Writing NODE_12196_length_243_cov_36.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12196_length_243_cov_36.983607_pilon to pilon.fasta [pilon] Writing NODE_12197_length_243_cov_36.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12197_length_243_cov_36.901639_pilon to pilon.fasta [pilon] Writing NODE_12198_length_243_cov_36.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12198_length_243_cov_36.836066_pilon to pilon.fasta [pilon] Writing NODE_12199_length_243_cov_36.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12199_length_243_cov_36.786885_pilon to pilon.fasta [pilon] Writing NODE_12200_length_243_cov_36.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_12200_length_243_cov_36.754098_pilon to pilon.fasta [pilon] Writing NODE_12201_length_243_cov_36.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12201_length_243_cov_36.704918_pilon to pilon.fasta [pilon] Writing NODE_12202_length_243_cov_36.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12202_length_243_cov_36.639344_pilon to pilon.fasta [pilon] Writing NODE_12203_length_243_cov_36.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12203_length_243_cov_36.622951_pilon to pilon.fasta [pilon] Writing NODE_12204_length_243_cov_36.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12204_length_243_cov_36.622951_pilon to pilon.fasta [pilon] Writing NODE_12205_length_243_cov_36.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12205_length_243_cov_36.581967_pilon to pilon.fasta [pilon] Writing NODE_12206_length_243_cov_36.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12206_length_243_cov_36.475410_pilon to pilon.fasta [pilon] Writing NODE_12207_length_243_cov_36.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_12207_length_243_cov_36.467213_pilon to pilon.fasta [pilon] Writing NODE_12208_length_243_cov_36.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12208_length_243_cov_36.459016_pilon to pilon.fasta [pilon] Writing NODE_12209_length_243_cov_36.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12209_length_243_cov_36.459016_pilon to pilon.fasta [pilon] Writing NODE_12210_length_243_cov_36.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12210_length_243_cov_36.418033_pilon to pilon.fasta [pilon] Writing NODE_12211_length_243_cov_36.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12211_length_243_cov_36.336066_pilon to pilon.fasta [pilon] Writing NODE_12212_length_243_cov_36.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_12212_length_243_cov_36.327869_pilon to pilon.fasta [pilon] Writing NODE_12213_length_243_cov_36.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12213_length_243_cov_36.204918_pilon to pilon.fasta [pilon] Writing NODE_12214_length_243_cov_36.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12214_length_243_cov_36.155738_pilon to pilon.fasta [pilon] Writing NODE_12215_length_243_cov_36.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12215_length_243_cov_36.155738_pilon to pilon.fasta [pilon] Writing NODE_12216_length_243_cov_36.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_12216_length_243_cov_36.147541_pilon to pilon.fasta [pilon] Writing NODE_12217_length_243_cov_36.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12217_length_243_cov_36.000000_pilon to pilon.fasta [pilon] Writing NODE_12218_length_243_cov_35.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12218_length_243_cov_35.909836_pilon to pilon.fasta [pilon] Writing NODE_12219_length_243_cov_35.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12219_length_243_cov_35.860656_pilon to pilon.fasta [pilon] Writing NODE_12220_length_243_cov_35.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12220_length_243_cov_35.762295_pilon to pilon.fasta [pilon] Writing NODE_12221_length_243_cov_35.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12221_length_243_cov_35.721311_pilon to pilon.fasta [pilon] Writing NODE_12222_length_243_cov_35.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12222_length_243_cov_35.639344_pilon to pilon.fasta [pilon] Writing NODE_12223_length_243_cov_35.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12223_length_243_cov_35.532787_pilon to pilon.fasta [pilon] Writing NODE_12224_length_243_cov_35.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12224_length_243_cov_35.500000_pilon to pilon.fasta [pilon] Writing NODE_12225_length_243_cov_35.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12225_length_243_cov_35.491803_pilon to pilon.fasta [pilon] Writing NODE_12226_length_243_cov_35.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12226_length_243_cov_35.491803_pilon to pilon.fasta [pilon] Writing NODE_12227_length_243_cov_35.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12227_length_243_cov_35.450820_pilon to pilon.fasta [pilon] Writing NODE_12228_length_243_cov_35.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12228_length_243_cov_35.409836_pilon to pilon.fasta [pilon] Writing NODE_12229_length_243_cov_35.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12229_length_243_cov_35.409836_pilon to pilon.fasta [pilon] Writing NODE_12230_length_243_cov_35.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12230_length_243_cov_35.393443_pilon to pilon.fasta [pilon] Writing NODE_12231_length_243_cov_35.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12231_length_243_cov_35.377049_pilon to pilon.fasta [pilon] Writing NODE_12232_length_243_cov_35.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12232_length_243_cov_35.360656_pilon to pilon.fasta [pilon] Writing NODE_12233_length_243_cov_35.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12233_length_243_cov_35.360656_pilon to pilon.fasta [pilon] Writing NODE_12234_length_243_cov_35.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12234_length_243_cov_35.229508_pilon to pilon.fasta [pilon] Writing NODE_12235_length_243_cov_35.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12235_length_243_cov_35.163934_pilon to pilon.fasta [pilon] Writing NODE_12236_length_243_cov_35.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_12236_length_243_cov_35.147541_pilon to pilon.fasta [pilon] Writing NODE_12237_length_243_cov_35.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12237_length_243_cov_35.106557_pilon to pilon.fasta [pilon] Writing NODE_12238_length_243_cov_35.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12238_length_243_cov_35.040984_pilon to pilon.fasta [pilon] Writing NODE_12239_length_243_cov_35.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12239_length_243_cov_35.040984_pilon to pilon.fasta [pilon] Writing NODE_12240_length_243_cov_35.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12240_length_243_cov_35.008197_pilon to pilon.fasta [pilon] Writing NODE_12241_length_243_cov_34.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12241_length_243_cov_34.975410_pilon to pilon.fasta [pilon] Writing NODE_12242_length_243_cov_34.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12242_length_243_cov_34.950820_pilon to pilon.fasta [pilon] Writing NODE_12243_length_243_cov_34.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12243_length_243_cov_34.901639_pilon to pilon.fasta [pilon] Writing NODE_12244_length_243_cov_34.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12244_length_243_cov_34.893443_pilon to pilon.fasta [pilon] Writing NODE_12245_length_243_cov_34.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12245_length_243_cov_34.778689_pilon to pilon.fasta [pilon] Writing NODE_12246_length_243_cov_34.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_12246_length_243_cov_34.737705_pilon to pilon.fasta [pilon] Writing NODE_12247_length_243_cov_34.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12247_length_243_cov_34.729508_pilon to pilon.fasta [pilon] Writing NODE_12248_length_243_cov_34.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12248_length_243_cov_34.688525_pilon to pilon.fasta [pilon] Writing NODE_12249_length_243_cov_34.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12249_length_243_cov_34.663934_pilon to pilon.fasta [pilon] Writing NODE_12250_length_243_cov_34.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12250_length_243_cov_34.622951_pilon to pilon.fasta [pilon] Writing NODE_12251_length_243_cov_34.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12251_length_243_cov_34.614754_pilon to pilon.fasta [pilon] Writing NODE_12252_length_243_cov_34.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12252_length_243_cov_34.606557_pilon to pilon.fasta [pilon] Writing NODE_12253_length_243_cov_34.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_12253_length_243_cov_34.573770_pilon to pilon.fasta [pilon] Writing NODE_12254_length_243_cov_34.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12254_length_243_cov_34.442623_pilon to pilon.fasta [pilon] Writing NODE_12255_length_243_cov_34.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12255_length_243_cov_34.360656_pilon to pilon.fasta [pilon] Writing NODE_12256_length_243_cov_34.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_12256_length_243_cov_34.344262_pilon to pilon.fasta [pilon] Writing NODE_12257_length_243_cov_34.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12257_length_243_cov_34.311475_pilon to pilon.fasta [pilon] Writing NODE_12258_length_243_cov_34.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12258_length_243_cov_34.303279_pilon to pilon.fasta [pilon] Writing NODE_12259_length_243_cov_34.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12259_length_243_cov_34.295082_pilon to pilon.fasta [pilon] Writing NODE_12260_length_243_cov_34.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12260_length_243_cov_34.295082_pilon to pilon.fasta [pilon] Writing NODE_12261_length_243_cov_34.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12261_length_243_cov_34.262295_pilon to pilon.fasta [pilon] Writing NODE_12262_length_243_cov_34.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_12262_length_243_cov_34.254098_pilon to pilon.fasta [pilon] Writing NODE_12263_length_243_cov_34.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12263_length_243_cov_34.229508_pilon to pilon.fasta [pilon] Writing NODE_12264_length_243_cov_34.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12264_length_243_cov_34.196721_pilon to pilon.fasta [pilon] Writing NODE_12265_length_243_cov_34.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12265_length_243_cov_34.180328_pilon to pilon.fasta [pilon] Writing NODE_12266_length_243_cov_34.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12266_length_243_cov_34.163934_pilon to pilon.fasta [pilon] Writing NODE_12267_length_243_cov_34.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12267_length_243_cov_34.114754_pilon to pilon.fasta [pilon] Writing NODE_12268_length_243_cov_34.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12268_length_243_cov_34.114754_pilon to pilon.fasta [pilon] Writing NODE_12269_length_243_cov_34.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_12269_length_243_cov_34.090164_pilon to pilon.fasta [pilon] Writing NODE_12270_length_243_cov_34.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12270_length_243_cov_34.024590_pilon to pilon.fasta [pilon] Writing NODE_12271_length_243_cov_34.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12271_length_243_cov_34.016393_pilon to pilon.fasta [pilon] Writing NODE_12272_length_243_cov_33.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12272_length_243_cov_33.991803_pilon to pilon.fasta [pilon] Writing NODE_12273_length_243_cov_33.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12273_length_243_cov_33.975410_pilon to pilon.fasta [pilon] Writing NODE_12274_length_243_cov_33.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12274_length_243_cov_33.942623_pilon to pilon.fasta [pilon] Writing NODE_12275_length_243_cov_33.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12275_length_243_cov_33.868852_pilon to pilon.fasta [pilon] Writing NODE_12276_length_243_cov_33.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_12276_length_243_cov_33.754098_pilon to pilon.fasta [pilon] Writing NODE_12277_length_243_cov_33.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_12277_length_243_cov_33.737705_pilon to pilon.fasta [pilon] Writing NODE_12278_length_243_cov_33.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12278_length_243_cov_33.696721_pilon to pilon.fasta [pilon] Writing NODE_12279_length_243_cov_33.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12279_length_243_cov_33.663934_pilon to pilon.fasta [pilon] Writing NODE_12280_length_243_cov_33.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12280_length_243_cov_33.655738_pilon to pilon.fasta [pilon] Writing NODE_12281_length_243_cov_33.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12281_length_243_cov_33.639344_pilon to pilon.fasta [pilon] Writing NODE_12282_length_243_cov_33.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12282_length_243_cov_33.639344_pilon to pilon.fasta [pilon] Writing NODE_12283_length_243_cov_33.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12283_length_243_cov_33.622951_pilon to pilon.fasta [pilon] Writing NODE_12284_length_243_cov_33.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12284_length_243_cov_33.606557_pilon to pilon.fasta [pilon] Writing NODE_12285_length_243_cov_33.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12285_length_243_cov_33.598361_pilon to pilon.fasta [pilon] Writing NODE_12286_length_243_cov_33.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12286_length_243_cov_33.532787_pilon to pilon.fasta [pilon] Writing NODE_12287_length_243_cov_33.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12287_length_243_cov_33.483607_pilon to pilon.fasta [pilon] Writing NODE_12288_length_243_cov_33.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12288_length_243_cov_33.483607_pilon to pilon.fasta [pilon] Writing NODE_12289_length_243_cov_33.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_12289_length_243_cov_33.467213_pilon to pilon.fasta [pilon] Writing NODE_12290_length_243_cov_33.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12290_length_243_cov_33.459016_pilon to pilon.fasta [pilon] Writing NODE_12291_length_243_cov_33.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12291_length_243_cov_33.434426_pilon to pilon.fasta [pilon] Writing NODE_12292_length_243_cov_33.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12292_length_243_cov_33.377049_pilon to pilon.fasta [pilon] Writing NODE_12293_length_243_cov_33.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_12293_length_243_cov_33.352459_pilon to pilon.fasta [pilon] Writing NODE_12294_length_243_cov_33.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_12294_length_243_cov_33.327869_pilon to pilon.fasta [pilon] Writing NODE_12295_length_243_cov_33.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_12295_length_243_cov_33.254098_pilon to pilon.fasta [pilon] Writing NODE_12296_length_243_cov_33.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12296_length_243_cov_33.196721_pilon to pilon.fasta [pilon] Writing NODE_12297_length_243_cov_33.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12297_length_243_cov_33.188525_pilon to pilon.fasta [pilon] Writing NODE_12298_length_243_cov_33.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12298_length_243_cov_33.188525_pilon to pilon.fasta [pilon] Writing NODE_12299_length_243_cov_33.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12299_length_243_cov_33.172131_pilon to pilon.fasta [pilon] Writing NODE_12300_length_243_cov_33.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_12300_length_243_cov_33.147541_pilon to pilon.fasta [pilon] Writing NODE_12301_length_243_cov_33.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12301_length_243_cov_33.139344_pilon to pilon.fasta [pilon] Writing NODE_12302_length_243_cov_33.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12302_length_243_cov_33.131148_pilon to pilon.fasta [pilon] Writing NODE_12303_length_243_cov_33.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12303_length_243_cov_33.122951_pilon to pilon.fasta [pilon] Writing NODE_12304_length_243_cov_33.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12304_length_243_cov_33.114754_pilon to pilon.fasta [pilon] Writing NODE_12305_length_243_cov_33.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12305_length_243_cov_33.049180_pilon to pilon.fasta [pilon] Writing NODE_12306_length_243_cov_32.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12306_length_243_cov_32.991803_pilon to pilon.fasta [pilon] Writing NODE_12307_length_243_cov_32.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12307_length_243_cov_32.991803_pilon to pilon.fasta [pilon] Writing NODE_12308_length_243_cov_32.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12308_length_243_cov_32.959016_pilon to pilon.fasta [pilon] Writing NODE_12309_length_243_cov_32.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12309_length_243_cov_32.959016_pilon to pilon.fasta [pilon] Writing NODE_12310_length_243_cov_32.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12310_length_243_cov_32.959016_pilon to pilon.fasta [pilon] Writing NODE_12311_length_243_cov_32.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12311_length_243_cov_32.950820_pilon to pilon.fasta [pilon] Writing NODE_12312_length_243_cov_32.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12312_length_243_cov_32.942623_pilon to pilon.fasta [pilon] Writing NODE_12313_length_243_cov_32.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12313_length_243_cov_32.934426_pilon to pilon.fasta [pilon] Writing NODE_12314_length_243_cov_32.885246:1-243 changes to pilon.changes [pilon] Writing updated NODE_12314_length_243_cov_32.885246_pilon to pilon.fasta [pilon] Writing NODE_12315_length_243_cov_32.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12315_length_243_cov_32.868852_pilon to pilon.fasta [pilon] Writing NODE_12316_length_243_cov_32.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12316_length_243_cov_32.860656_pilon to pilon.fasta [pilon] Writing NODE_12317_length_243_cov_32.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_12317_length_243_cov_32.844262_pilon to pilon.fasta [pilon] Writing NODE_12318_length_243_cov_32.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12318_length_243_cov_32.786885_pilon to pilon.fasta [pilon] Writing NODE_12319_length_243_cov_32.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12319_length_243_cov_32.688525_pilon to pilon.fasta [pilon] Writing NODE_12320_length_243_cov_32.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12320_length_243_cov_32.688525_pilon to pilon.fasta [pilon] Writing NODE_12321_length_243_cov_32.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12321_length_243_cov_32.680328_pilon to pilon.fasta [pilon] Writing NODE_12322_length_243_cov_32.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12322_length_243_cov_32.672131_pilon to pilon.fasta [pilon] Writing NODE_12323_length_243_cov_32.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12323_length_243_cov_32.655738_pilon to pilon.fasta [pilon] Writing NODE_12324_length_243_cov_32.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12324_length_243_cov_32.655738_pilon to pilon.fasta [pilon] Writing NODE_12325_length_243_cov_32.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12325_length_243_cov_32.639344_pilon to pilon.fasta [pilon] Writing NODE_12326_length_243_cov_32.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12326_length_243_cov_32.631148_pilon to pilon.fasta [pilon] Writing NODE_12327_length_243_cov_32.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12327_length_243_cov_32.631148_pilon to pilon.fasta [pilon] Writing NODE_12328_length_243_cov_32.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12328_length_243_cov_32.622951_pilon to pilon.fasta [pilon] Writing NODE_12329_length_243_cov_32.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12329_length_243_cov_32.606557_pilon to pilon.fasta [pilon] Writing NODE_12330_length_243_cov_32.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_12330_length_243_cov_32.590164_pilon to pilon.fasta [pilon] Writing NODE_12331_length_243_cov_32.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12331_length_243_cov_32.540984_pilon to pilon.fasta [pilon] Writing NODE_12332_length_243_cov_32.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12332_length_243_cov_32.532787_pilon to pilon.fasta [pilon] Writing NODE_12333_length_243_cov_32.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12333_length_243_cov_32.516393_pilon to pilon.fasta [pilon] Writing NODE_12334_length_243_cov_32.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12334_length_243_cov_32.516393_pilon to pilon.fasta [pilon] Writing NODE_12335_length_243_cov_32.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12335_length_243_cov_32.508197_pilon to pilon.fasta [pilon] Writing NODE_12336_length_243_cov_32.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12336_length_243_cov_32.483607_pilon to pilon.fasta [pilon] Writing NODE_12337_length_243_cov_32.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12337_length_243_cov_32.483607_pilon to pilon.fasta [pilon] Writing NODE_12338_length_243_cov_32.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12338_length_243_cov_32.475410_pilon to pilon.fasta [pilon] Writing NODE_12339_length_243_cov_32.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12339_length_243_cov_32.459016_pilon to pilon.fasta [pilon] Writing NODE_12340_length_243_cov_32.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12340_length_243_cov_32.450820_pilon to pilon.fasta [pilon] Writing NODE_12341_length_243_cov_32.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12341_length_243_cov_32.442623_pilon to pilon.fasta [pilon] Writing NODE_12342_length_243_cov_32.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12342_length_243_cov_32.434426_pilon to pilon.fasta [pilon] Writing NODE_12343_length_243_cov_32.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12343_length_243_cov_32.336066_pilon to pilon.fasta [pilon] Writing NODE_12344_length_243_cov_32.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12344_length_243_cov_32.336066_pilon to pilon.fasta [pilon] Writing NODE_12345_length_243_cov_32.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12345_length_243_cov_32.262295_pilon to pilon.fasta [pilon] Writing NODE_12346_length_243_cov_32.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12346_length_243_cov_32.245902_pilon to pilon.fasta [pilon] Writing NODE_12347_length_243_cov_32.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12347_length_243_cov_32.155738_pilon to pilon.fasta [pilon] Writing NODE_12348_length_243_cov_32.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12348_length_243_cov_32.098361_pilon to pilon.fasta [pilon] Writing NODE_12349_length_243_cov_32.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12349_length_243_cov_32.081967_pilon to pilon.fasta [pilon] Writing NODE_12350_length_243_cov_32.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12350_length_243_cov_32.081967_pilon to pilon.fasta [pilon] Writing NODE_12351_length_243_cov_32.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12351_length_243_cov_32.040984_pilon to pilon.fasta [pilon] Writing NODE_12352_length_243_cov_32.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12352_length_243_cov_32.032787_pilon to pilon.fasta [pilon] Writing NODE_12353_length_243_cov_32.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12353_length_243_cov_32.024590_pilon to pilon.fasta [pilon] Writing NODE_12354_length_243_cov_32.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12354_length_243_cov_32.024590_pilon to pilon.fasta [pilon] Writing NODE_12355_length_243_cov_31.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12355_length_243_cov_31.991803_pilon to pilon.fasta [pilon] Writing NODE_12356_length_243_cov_31.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12356_length_243_cov_31.918033_pilon to pilon.fasta [pilon] Writing NODE_12357_length_243_cov_31.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12357_length_243_cov_31.909836_pilon to pilon.fasta [pilon] Writing NODE_12358_length_243_cov_31.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12358_length_243_cov_31.893443_pilon to pilon.fasta [pilon] Writing NODE_12359_length_243_cov_31.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_12359_length_243_cov_31.852459_pilon to pilon.fasta [pilon] Writing NODE_12360_length_243_cov_31.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_12360_length_243_cov_31.844262_pilon to pilon.fasta [pilon] Writing NODE_12361_length_243_cov_31.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12361_length_243_cov_31.819672_pilon to pilon.fasta [pilon] Writing NODE_12362_length_243_cov_31.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12362_length_243_cov_31.803279_pilon to pilon.fasta [pilon] Writing NODE_12363_length_243_cov_31.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12363_length_243_cov_31.786885_pilon to pilon.fasta [pilon] Writing NODE_12364_length_243_cov_31.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12364_length_243_cov_31.778689_pilon to pilon.fasta [pilon] Writing NODE_12365_length_243_cov_31.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12365_length_243_cov_31.770492_pilon to pilon.fasta [pilon] Writing NODE_12366_length_243_cov_31.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12366_length_243_cov_31.762295_pilon to pilon.fasta [pilon] Writing NODE_12367_length_243_cov_31.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12367_length_243_cov_31.745902_pilon to pilon.fasta [pilon] Writing NODE_12368_length_243_cov_31.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12368_length_243_cov_31.721311_pilon to pilon.fasta [pilon] Writing NODE_12369_length_243_cov_31.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12369_length_243_cov_31.713115_pilon to pilon.fasta [pilon] Writing NODE_12370_length_243_cov_31.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12370_length_243_cov_31.696721_pilon to pilon.fasta [pilon] Writing NODE_12371_length_243_cov_31.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12371_length_243_cov_31.680328_pilon to pilon.fasta [pilon] Writing NODE_12372_length_243_cov_31.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12372_length_243_cov_31.663934_pilon to pilon.fasta [pilon] Writing NODE_12373_length_243_cov_31.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12373_length_243_cov_31.557377_pilon to pilon.fasta [pilon] Writing NODE_12374_length_243_cov_31.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12374_length_243_cov_31.549180_pilon to pilon.fasta [pilon] Writing NODE_12375_length_243_cov_31.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12375_length_243_cov_31.508197_pilon to pilon.fasta [pilon] Writing NODE_12376_length_243_cov_31.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12376_length_243_cov_31.508197_pilon to pilon.fasta [pilon] Writing NODE_12377_length_243_cov_31.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12377_length_243_cov_31.491803_pilon to pilon.fasta [pilon] Writing NODE_12378_length_243_cov_31.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12378_length_243_cov_31.483607_pilon to pilon.fasta [pilon] Writing NODE_12379_length_243_cov_31.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12379_length_243_cov_31.442623_pilon to pilon.fasta [pilon] Writing NODE_12380_length_243_cov_31.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12380_length_243_cov_31.442623_pilon to pilon.fasta [pilon] Writing NODE_12381_length_243_cov_31.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12381_length_243_cov_31.434426_pilon to pilon.fasta [pilon] Writing NODE_12382_length_243_cov_31.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12382_length_243_cov_31.418033_pilon to pilon.fasta [pilon] Writing NODE_12383_length_243_cov_31.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12383_length_243_cov_31.409836_pilon to pilon.fasta [pilon] Writing NODE_12384_length_243_cov_31.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12384_length_243_cov_31.368852_pilon to pilon.fasta [pilon] Writing NODE_12385_length_243_cov_31.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_12385_length_243_cov_31.344262_pilon to pilon.fasta [pilon] Writing NODE_12386_length_243_cov_31.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_12386_length_243_cov_31.344262_pilon to pilon.fasta [pilon] Writing NODE_12387_length_243_cov_31.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12387_length_243_cov_31.319672_pilon to pilon.fasta [pilon] Writing NODE_12388_length_243_cov_31.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12388_length_243_cov_31.319672_pilon to pilon.fasta [pilon] Writing NODE_12389_length_243_cov_31.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12389_length_243_cov_31.311475_pilon to pilon.fasta [pilon] Writing NODE_12390_length_243_cov_31.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12390_length_243_cov_31.311475_pilon to pilon.fasta [pilon] Writing NODE_12391_length_243_cov_31.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12391_length_243_cov_31.295082_pilon to pilon.fasta [pilon] Writing NODE_12392_length_243_cov_31.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12392_length_243_cov_31.221311_pilon to pilon.fasta [pilon] Writing NODE_12393_length_243_cov_31.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12393_length_243_cov_31.204918_pilon to pilon.fasta [pilon] Writing NODE_12394_length_243_cov_31.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12394_length_243_cov_31.188525_pilon to pilon.fasta [pilon] Writing NODE_12395_length_243_cov_31.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12395_length_243_cov_31.122951_pilon to pilon.fasta [pilon] Writing NODE_12396_length_243_cov_31.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12396_length_243_cov_31.065574_pilon to pilon.fasta [pilon] Writing NODE_12397_length_243_cov_31.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12397_length_243_cov_31.065574_pilon to pilon.fasta [pilon] Writing NODE_12398_length_243_cov_31.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12398_length_243_cov_31.032787_pilon to pilon.fasta [pilon] Writing NODE_12399_length_243_cov_31.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12399_length_243_cov_31.016393_pilon to pilon.fasta [pilon] Writing NODE_12400_length_243_cov_31.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12400_length_243_cov_31.008197_pilon to pilon.fasta [pilon] Writing NODE_12401_length_243_cov_30.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_12401_length_243_cov_30.852459_pilon to pilon.fasta [pilon] Writing NODE_12402_length_243_cov_30.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_12402_length_243_cov_30.852459_pilon to pilon.fasta [pilon] Writing NODE_12403_length_243_cov_30.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_12403_length_243_cov_30.827869_pilon to pilon.fasta [pilon] Writing NODE_12404_length_243_cov_30.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_12404_length_243_cov_30.827869_pilon to pilon.fasta [pilon] Writing NODE_12405_length_243_cov_30.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12405_length_243_cov_30.819672_pilon to pilon.fasta [pilon] Writing NODE_12406_length_243_cov_30.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12406_length_243_cov_30.811475_pilon to pilon.fasta [pilon] Writing NODE_12407_length_243_cov_30.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12407_length_243_cov_30.803279_pilon to pilon.fasta [pilon] Writing NODE_12408_length_243_cov_30.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12408_length_243_cov_30.786885_pilon to pilon.fasta [pilon] Writing NODE_12409_length_243_cov_30.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12409_length_243_cov_30.778689_pilon to pilon.fasta [pilon] Writing NODE_12410_length_243_cov_30.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12410_length_243_cov_30.762295_pilon to pilon.fasta [pilon] Writing NODE_12411_length_243_cov_30.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12411_length_243_cov_30.762295_pilon to pilon.fasta [pilon] Writing NODE_12412_length_243_cov_30.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12412_length_243_cov_30.704918_pilon to pilon.fasta [pilon] Writing NODE_12413_length_243_cov_30.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12413_length_243_cov_30.672131_pilon to pilon.fasta [pilon] Writing NODE_12414_length_243_cov_30.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12414_length_243_cov_30.655738_pilon to pilon.fasta [pilon] Writing NODE_12415_length_243_cov_30.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_12415_length_243_cov_30.647541_pilon to pilon.fasta [pilon] Writing NODE_12416_length_243_cov_30.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12416_length_243_cov_30.631148_pilon to pilon.fasta [pilon] Writing NODE_12417_length_243_cov_30.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12417_length_243_cov_30.631148_pilon to pilon.fasta [pilon] Writing NODE_12418_length_243_cov_30.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12418_length_243_cov_30.598361_pilon to pilon.fasta [pilon] Writing NODE_12419_length_243_cov_30.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12419_length_243_cov_30.581967_pilon to pilon.fasta [pilon] Writing NODE_12420_length_243_cov_30.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12420_length_243_cov_30.557377_pilon to pilon.fasta [pilon] Writing NODE_12421_length_243_cov_30.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12421_length_243_cov_30.516393_pilon to pilon.fasta [pilon] Writing NODE_12422_length_243_cov_30.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12422_length_243_cov_30.508197_pilon to pilon.fasta [pilon] Writing NODE_12423_length_243_cov_30.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12423_length_243_cov_30.434426_pilon to pilon.fasta [pilon] Writing NODE_12424_length_243_cov_30.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12424_length_243_cov_30.418033_pilon to pilon.fasta [pilon] Writing NODE_12425_length_243_cov_30.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12425_length_243_cov_30.409836_pilon to pilon.fasta [pilon] Writing NODE_12426_length_243_cov_30.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12426_length_243_cov_30.401639_pilon to pilon.fasta [pilon] Writing NODE_12427_length_243_cov_30.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12427_length_243_cov_30.393443_pilon to pilon.fasta [pilon] Writing NODE_12428_length_243_cov_30.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12428_length_243_cov_30.368852_pilon to pilon.fasta [pilon] Writing NODE_12429_length_243_cov_30.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12429_length_243_cov_30.336066_pilon to pilon.fasta [pilon] Writing NODE_12430_length_243_cov_30.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12430_length_243_cov_30.311475_pilon to pilon.fasta [pilon] Writing NODE_12431_length_243_cov_30.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12431_length_243_cov_30.311475_pilon to pilon.fasta [pilon] Writing NODE_12432_length_243_cov_30.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12432_length_243_cov_30.295082_pilon to pilon.fasta [pilon] Writing NODE_12433_length_243_cov_30.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12433_length_243_cov_30.270492_pilon to pilon.fasta [pilon] Writing NODE_12434_length_243_cov_30.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12434_length_243_cov_30.262295_pilon to pilon.fasta [pilon] Writing NODE_12435_length_243_cov_30.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12435_length_243_cov_30.245902_pilon to pilon.fasta [pilon] Writing NODE_12436_length_243_cov_30.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12436_length_243_cov_30.229508_pilon to pilon.fasta [pilon] Writing NODE_12437_length_243_cov_30.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12437_length_243_cov_30.213115_pilon to pilon.fasta [pilon] Writing NODE_12438_length_243_cov_30.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12438_length_243_cov_30.204918_pilon to pilon.fasta [pilon] Writing NODE_12439_length_243_cov_30.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12439_length_243_cov_30.196721_pilon to pilon.fasta [pilon] Writing NODE_12440_length_243_cov_30.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12440_length_243_cov_30.131148_pilon to pilon.fasta [pilon] Writing NODE_12441_length_243_cov_30.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12441_length_243_cov_30.106557_pilon to pilon.fasta [pilon] Writing NODE_12442_length_243_cov_30.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_12442_length_243_cov_30.090164_pilon to pilon.fasta [pilon] Writing NODE_12443_length_243_cov_30.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12443_length_243_cov_30.081967_pilon to pilon.fasta [pilon] Writing NODE_12444_length_243_cov_30.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_12444_length_243_cov_30.073770_pilon to pilon.fasta [pilon] Writing NODE_12445_length_243_cov_30.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12445_length_243_cov_30.065574_pilon to pilon.fasta [pilon] Writing NODE_12446_length_243_cov_30.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12446_length_243_cov_30.057377_pilon to pilon.fasta [pilon] Writing NODE_12447_length_243_cov_30.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12447_length_243_cov_30.049180_pilon to pilon.fasta [pilon] Writing NODE_12448_length_243_cov_30.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12448_length_243_cov_30.024590_pilon to pilon.fasta [pilon] Writing NODE_12449_length_243_cov_29.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12449_length_243_cov_29.959016_pilon to pilon.fasta [pilon] Writing NODE_12450_length_243_cov_29.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12450_length_243_cov_29.901639_pilon to pilon.fasta [pilon] Writing NODE_12451_length_243_cov_29.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12451_length_243_cov_29.893443_pilon to pilon.fasta [pilon] Writing NODE_12452_length_243_cov_29.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12452_length_243_cov_29.868852_pilon to pilon.fasta [pilon] Writing NODE_12453_length_243_cov_29.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12453_length_243_cov_29.836066_pilon to pilon.fasta [pilon] Writing NODE_12454_length_243_cov_29.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_12454_length_243_cov_29.827869_pilon to pilon.fasta [pilon] Writing NODE_12455_length_243_cov_29.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12455_length_243_cov_29.803279_pilon to pilon.fasta [pilon] Writing NODE_12456_length_243_cov_29.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12456_length_243_cov_29.803279_pilon to pilon.fasta [pilon] Writing NODE_12457_length_243_cov_29.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12457_length_243_cov_29.770492_pilon to pilon.fasta [pilon] Writing NODE_12458_length_243_cov_29.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12458_length_243_cov_29.762295_pilon to pilon.fasta [pilon] Writing NODE_12459_length_243_cov_29.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_12459_length_243_cov_29.754098_pilon to pilon.fasta [pilon] Writing NODE_12460_length_243_cov_29.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_12460_length_243_cov_29.754098_pilon to pilon.fasta [pilon] Writing NODE_12461_length_243_cov_29.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12461_length_243_cov_29.704918_pilon to pilon.fasta [pilon] Writing NODE_12462_length_243_cov_29.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12462_length_243_cov_29.696721_pilon to pilon.fasta [pilon] Writing NODE_12463_length_243_cov_29.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12463_length_243_cov_29.680328_pilon to pilon.fasta [pilon] Writing NODE_12464_length_243_cov_29.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12464_length_243_cov_29.680328_pilon to pilon.fasta [pilon] Writing NODE_12465_length_243_cov_29.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12465_length_243_cov_29.672131_pilon to pilon.fasta [pilon] Writing NODE_12466_length_243_cov_29.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12466_length_243_cov_29.663934_pilon to pilon.fasta [pilon] Writing NODE_12467_length_243_cov_29.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12467_length_243_cov_29.663934_pilon to pilon.fasta [pilon] Writing NODE_12468_length_243_cov_29.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12468_length_243_cov_29.663934_pilon to pilon.fasta [pilon] Writing NODE_12469_length_243_cov_29.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_12469_length_243_cov_29.647541_pilon to pilon.fasta [pilon] Writing NODE_12470_length_243_cov_29.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12470_length_243_cov_29.614754_pilon to pilon.fasta [pilon] Writing NODE_12471_length_243_cov_29.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12471_length_243_cov_29.614754_pilon to pilon.fasta [pilon] Writing NODE_12472_length_243_cov_29.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12472_length_243_cov_29.606557_pilon to pilon.fasta [pilon] Writing NODE_12473_length_243_cov_29.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_12473_length_243_cov_29.573770_pilon to pilon.fasta [pilon] Writing NODE_12474_length_243_cov_29.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12474_length_243_cov_29.549180_pilon to pilon.fasta [pilon] Writing NODE_12475_length_243_cov_29.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12475_length_243_cov_29.549180_pilon to pilon.fasta [pilon] Writing NODE_12476_length_243_cov_29.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12476_length_243_cov_29.516393_pilon to pilon.fasta [pilon] Writing NODE_12477_length_243_cov_29.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12477_length_243_cov_29.508197_pilon to pilon.fasta [pilon] Writing NODE_12478_length_243_cov_29.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12478_length_243_cov_29.483607_pilon to pilon.fasta [pilon] Writing NODE_12479_length_243_cov_29.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12479_length_243_cov_29.459016_pilon to pilon.fasta [pilon] Writing NODE_12480_length_243_cov_29.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12480_length_243_cov_29.450820_pilon to pilon.fasta [pilon] Writing NODE_12481_length_243_cov_29.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12481_length_243_cov_29.434426_pilon to pilon.fasta [pilon] Writing NODE_12482_length_243_cov_29.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12482_length_243_cov_29.434426_pilon to pilon.fasta [pilon] Writing NODE_12483_length_243_cov_29.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12483_length_243_cov_29.377049_pilon to pilon.fasta [pilon] Writing NODE_12484_length_243_cov_29.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12484_length_243_cov_29.377049_pilon to pilon.fasta [pilon] Writing NODE_12485_length_243_cov_29.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12485_length_243_cov_29.368852_pilon to pilon.fasta [pilon] Writing NODE_12486_length_243_cov_29.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12486_length_243_cov_29.368852_pilon to pilon.fasta [pilon] Writing NODE_12487_length_243_cov_29.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_12487_length_243_cov_29.352459_pilon to pilon.fasta [pilon] Writing NODE_12488_length_243_cov_29.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12488_length_243_cov_29.319672_pilon to pilon.fasta [pilon] Writing NODE_12489_length_243_cov_29.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12489_length_243_cov_29.319672_pilon to pilon.fasta [pilon] Writing NODE_12490_length_243_cov_29.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12490_length_243_cov_29.303279_pilon to pilon.fasta [pilon] Writing NODE_12491_length_243_cov_29.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12491_length_243_cov_29.262295_pilon to pilon.fasta [pilon] Writing NODE_12492_length_243_cov_29.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12492_length_243_cov_29.213115_pilon to pilon.fasta [pilon] Writing NODE_12493_length_243_cov_29.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12493_length_243_cov_29.196721_pilon to pilon.fasta [pilon] Writing NODE_12494_length_243_cov_29.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12494_length_243_cov_29.188525_pilon to pilon.fasta [pilon] Writing NODE_12495_length_243_cov_29.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12495_length_243_cov_29.172131_pilon to pilon.fasta [pilon] Writing NODE_12496_length_243_cov_29.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12496_length_243_cov_29.163934_pilon to pilon.fasta [pilon] Writing NODE_12497_length_243_cov_29.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12497_length_243_cov_29.163934_pilon to pilon.fasta [pilon] Writing NODE_12498_length_243_cov_29.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12498_length_243_cov_29.155738_pilon to pilon.fasta [pilon] Writing NODE_12499_length_243_cov_29.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12499_length_243_cov_29.131148_pilon to pilon.fasta [pilon] Writing NODE_12500_length_243_cov_29.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12500_length_243_cov_29.114754_pilon to pilon.fasta [pilon] Writing NODE_12501_length_243_cov_29.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12501_length_243_cov_29.106557_pilon to pilon.fasta [pilon] Writing NODE_12502_length_243_cov_29.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12502_length_243_cov_29.098361_pilon to pilon.fasta [pilon] Writing NODE_12503_length_243_cov_29.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12503_length_243_cov_29.040984_pilon to pilon.fasta [pilon] Writing NODE_12504_length_243_cov_29.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12504_length_243_cov_29.032787_pilon to pilon.fasta [pilon] Writing NODE_12505_length_243_cov_29.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12505_length_243_cov_29.016393_pilon to pilon.fasta [pilon] Writing NODE_12506_length_243_cov_29.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12506_length_243_cov_29.016393_pilon to pilon.fasta [pilon] Writing NODE_12507_length_243_cov_29.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12507_length_243_cov_29.008197_pilon to pilon.fasta [pilon] Writing NODE_12508_length_243_cov_29.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12508_length_243_cov_29.000000_pilon to pilon.fasta [pilon] Writing NODE_12509_length_243_cov_28.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_12509_length_243_cov_28.967213_pilon to pilon.fasta [pilon] Writing NODE_12510_length_243_cov_28.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12510_length_243_cov_28.942623_pilon to pilon.fasta [pilon] Writing NODE_12511_length_243_cov_28.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12511_length_243_cov_28.901639_pilon to pilon.fasta [pilon] Writing NODE_12512_length_243_cov_28.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12512_length_243_cov_28.877049_pilon to pilon.fasta [pilon] Writing NODE_12513_length_243_cov_28.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12513_length_243_cov_28.877049_pilon to pilon.fasta [pilon] Writing NODE_12514_length_243_cov_28.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12514_length_243_cov_28.868852_pilon to pilon.fasta [pilon] Writing NODE_12515_length_243_cov_28.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12515_length_243_cov_28.836066_pilon to pilon.fasta [pilon] Writing NODE_12516_length_243_cov_28.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12516_length_243_cov_28.819672_pilon to pilon.fasta [pilon] Writing NODE_12517_length_243_cov_28.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12517_length_243_cov_28.811475_pilon to pilon.fasta [pilon] Writing NODE_12518_length_243_cov_28.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12518_length_243_cov_28.811475_pilon to pilon.fasta [pilon] Writing NODE_12519_length_243_cov_28.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12519_length_243_cov_28.803279_pilon to pilon.fasta [pilon] Writing NODE_12520_length_243_cov_28.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12520_length_243_cov_28.795082_pilon to pilon.fasta [pilon] Writing NODE_12521_length_243_cov_28.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12521_length_243_cov_28.786885_pilon to pilon.fasta [pilon] Writing NODE_12522_length_243_cov_28.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12522_length_243_cov_28.786885_pilon to pilon.fasta [pilon] Writing NODE_12523_length_243_cov_28.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12523_length_243_cov_28.778689_pilon to pilon.fasta [pilon] Writing NODE_12524_length_243_cov_28.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12524_length_243_cov_28.762295_pilon to pilon.fasta [pilon] Writing NODE_12525_length_243_cov_28.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12525_length_243_cov_28.729508_pilon to pilon.fasta [pilon] Writing NODE_12526_length_243_cov_28.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12526_length_243_cov_28.729508_pilon to pilon.fasta [pilon] Writing NODE_12527_length_243_cov_28.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12527_length_243_cov_28.729508_pilon to pilon.fasta [pilon] Writing NODE_12528_length_243_cov_28.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12528_length_243_cov_28.713115_pilon to pilon.fasta [pilon] Writing NODE_12529_length_243_cov_28.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12529_length_243_cov_28.655738_pilon to pilon.fasta [pilon] Writing NODE_12530_length_243_cov_28.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12530_length_243_cov_28.639344_pilon to pilon.fasta [pilon] Writing NODE_12531_length_243_cov_28.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12531_length_243_cov_28.622951_pilon to pilon.fasta [pilon] Writing NODE_12532_length_243_cov_28.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12532_length_243_cov_28.598361_pilon to pilon.fasta [pilon] Writing NODE_12533_length_243_cov_28.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12533_length_243_cov_28.598361_pilon to pilon.fasta [pilon] Writing NODE_12534_length_243_cov_28.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12534_length_243_cov_28.581967_pilon to pilon.fasta [pilon] Writing NODE_12535_length_243_cov_28.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12535_length_243_cov_28.532787_pilon to pilon.fasta [pilon] Writing NODE_12536_length_243_cov_28.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12536_length_243_cov_28.524590_pilon to pilon.fasta [pilon] Writing NODE_12537_length_243_cov_28.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12537_length_243_cov_28.508197_pilon to pilon.fasta [pilon] Writing NODE_12538_length_243_cov_28.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12538_length_243_cov_28.475410_pilon to pilon.fasta [pilon] Writing NODE_12539_length_243_cov_28.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12539_length_243_cov_28.459016_pilon to pilon.fasta [pilon] Writing NODE_12540_length_243_cov_28.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12540_length_243_cov_28.459016_pilon to pilon.fasta [pilon] Writing NODE_12541_length_243_cov_28.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12541_length_243_cov_28.442623_pilon to pilon.fasta [pilon] Writing NODE_12542_length_243_cov_28.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12542_length_243_cov_28.434426_pilon to pilon.fasta [pilon] Writing NODE_12543_length_243_cov_28.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12543_length_243_cov_28.418033_pilon to pilon.fasta [pilon] Writing NODE_12544_length_243_cov_28.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12544_length_243_cov_28.393443_pilon to pilon.fasta [pilon] Writing NODE_12545_length_243_cov_28.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12545_length_243_cov_28.377049_pilon to pilon.fasta [pilon] Writing NODE_12546_length_243_cov_28.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12546_length_243_cov_28.360656_pilon to pilon.fasta [pilon] Writing NODE_12547_length_243_cov_28.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12547_length_243_cov_28.360656_pilon to pilon.fasta [pilon] Writing NODE_12548_length_243_cov_28.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_12548_length_243_cov_28.344262_pilon to pilon.fasta [pilon] Writing NODE_12549_length_243_cov_28.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12549_length_243_cov_28.286885_pilon to pilon.fasta [pilon] Writing NODE_12550_length_243_cov_28.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12550_length_243_cov_28.278689_pilon to pilon.fasta [pilon] Writing NODE_12551_length_243_cov_28.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12551_length_243_cov_28.278689_pilon to pilon.fasta [pilon] Writing NODE_12552_length_243_cov_28.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12552_length_243_cov_28.270492_pilon to pilon.fasta [pilon] Writing NODE_12553_length_243_cov_28.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12553_length_243_cov_28.229508_pilon to pilon.fasta [pilon] Writing NODE_12554_length_243_cov_28.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12554_length_243_cov_28.213115_pilon to pilon.fasta [pilon] Writing NODE_12555_length_243_cov_28.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12555_length_243_cov_28.204918_pilon to pilon.fasta [pilon] Writing NODE_12556_length_243_cov_28.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12556_length_243_cov_28.196721_pilon to pilon.fasta [pilon] Writing NODE_12557_length_243_cov_28.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12557_length_243_cov_28.172131_pilon to pilon.fasta [pilon] Writing NODE_12558_length_243_cov_28.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12558_length_243_cov_28.172131_pilon to pilon.fasta [pilon] Writing NODE_12559_length_243_cov_28.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12559_length_243_cov_28.155738_pilon to pilon.fasta [pilon] Writing NODE_12560_length_243_cov_28.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12560_length_243_cov_28.139344_pilon to pilon.fasta [pilon] Writing NODE_12561_length_243_cov_28.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12561_length_243_cov_28.122951_pilon to pilon.fasta [pilon] Writing NODE_12562_length_243_cov_28.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12562_length_243_cov_28.106557_pilon to pilon.fasta [pilon] Writing NODE_12563_length_243_cov_28.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12563_length_243_cov_28.106557_pilon to pilon.fasta [pilon] Writing NODE_12564_length_243_cov_28.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12564_length_243_cov_28.098361_pilon to pilon.fasta [pilon] Writing NODE_12565_length_243_cov_28.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_12565_length_243_cov_28.073770_pilon to pilon.fasta [pilon] Writing NODE_12566_length_243_cov_28.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12566_length_243_cov_28.065574_pilon to pilon.fasta [pilon] Writing NODE_12567_length_243_cov_28.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12567_length_243_cov_28.065574_pilon to pilon.fasta [pilon] Writing NODE_12568_length_243_cov_28.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12568_length_243_cov_28.065574_pilon to pilon.fasta [pilon] Writing NODE_12569_length_243_cov_28.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12569_length_243_cov_28.049180_pilon to pilon.fasta [pilon] Writing NODE_12570_length_243_cov_28.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12570_length_243_cov_28.016393_pilon to pilon.fasta [pilon] Writing NODE_12571_length_243_cov_28.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12571_length_243_cov_28.016393_pilon to pilon.fasta [pilon] Writing NODE_12572_length_243_cov_27.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12572_length_243_cov_27.950820_pilon to pilon.fasta [pilon] Writing NODE_12573_length_243_cov_27.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12573_length_243_cov_27.950820_pilon to pilon.fasta [pilon] Writing NODE_12574_length_243_cov_27.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12574_length_243_cov_27.942623_pilon to pilon.fasta [pilon] Writing NODE_12575_length_243_cov_27.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12575_length_243_cov_27.909836_pilon to pilon.fasta [pilon] Writing NODE_12576_length_243_cov_27.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12576_length_243_cov_27.868852_pilon to pilon.fasta [pilon] Writing NODE_12577_length_243_cov_27.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12577_length_243_cov_27.819672_pilon to pilon.fasta [pilon] Writing NODE_12578_length_243_cov_27.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12578_length_243_cov_27.803279_pilon to pilon.fasta [pilon] Writing NODE_12579_length_243_cov_27.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12579_length_243_cov_27.786885_pilon to pilon.fasta [pilon] Writing NODE_12580_length_243_cov_27.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12580_length_243_cov_27.770492_pilon to pilon.fasta [pilon] Writing NODE_12581_length_243_cov_27.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_12581_length_243_cov_27.737705_pilon to pilon.fasta [pilon] Writing NODE_12582_length_243_cov_27.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12582_length_243_cov_27.729508_pilon to pilon.fasta [pilon] Writing NODE_12583_length_243_cov_27.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12583_length_243_cov_27.713115_pilon to pilon.fasta [pilon] Writing NODE_12584_length_243_cov_27.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12584_length_243_cov_27.696721_pilon to pilon.fasta [pilon] Writing NODE_12585_length_243_cov_27.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12585_length_243_cov_27.688525_pilon to pilon.fasta [pilon] Writing NODE_12586_length_243_cov_27.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12586_length_243_cov_27.680328_pilon to pilon.fasta [pilon] Writing NODE_12587_length_243_cov_27.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12587_length_243_cov_27.680328_pilon to pilon.fasta [pilon] Writing NODE_12588_length_243_cov_27.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12588_length_243_cov_27.672131_pilon to pilon.fasta [pilon] Writing NODE_12589_length_243_cov_27.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12589_length_243_cov_27.672131_pilon to pilon.fasta [pilon] Writing NODE_12590_length_243_cov_27.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12590_length_243_cov_27.663934_pilon to pilon.fasta [pilon] Writing NODE_12591_length_243_cov_27.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12591_length_243_cov_27.663934_pilon to pilon.fasta [pilon] Writing NODE_12592_length_243_cov_27.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12592_length_243_cov_27.663934_pilon to pilon.fasta [pilon] Writing NODE_12593_length_243_cov_27.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12593_length_243_cov_27.655738_pilon to pilon.fasta [pilon] Writing NODE_12594_length_243_cov_27.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12594_length_243_cov_27.639344_pilon to pilon.fasta [pilon] Writing NODE_12595_length_243_cov_27.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12595_length_243_cov_27.639344_pilon to pilon.fasta [pilon] Writing NODE_12596_length_243_cov_27.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12596_length_243_cov_27.639344_pilon to pilon.fasta [pilon] Writing NODE_12597_length_243_cov_27.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12597_length_243_cov_27.614754_pilon to pilon.fasta [pilon] Writing NODE_12598_length_243_cov_27.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12598_length_243_cov_27.614754_pilon to pilon.fasta [pilon] Writing NODE_12599_length_243_cov_27.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12599_length_243_cov_27.598361_pilon to pilon.fasta [pilon] Writing NODE_12600_length_243_cov_27.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_12600_length_243_cov_27.573770_pilon to pilon.fasta [pilon] Writing NODE_12601_length_243_cov_27.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12601_length_243_cov_27.565574_pilon to pilon.fasta [pilon] Writing NODE_12602_length_243_cov_27.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12602_length_243_cov_27.557377_pilon to pilon.fasta [pilon] Writing NODE_12603_length_243_cov_27.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12603_length_243_cov_27.557377_pilon to pilon.fasta [pilon] Writing NODE_12604_length_243_cov_27.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12604_length_243_cov_27.557377_pilon to pilon.fasta [pilon] Writing NODE_12605_length_243_cov_27.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12605_length_243_cov_27.508197_pilon to pilon.fasta [pilon] Writing NODE_12606_length_243_cov_27.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12606_length_243_cov_27.500000_pilon to pilon.fasta [pilon] Writing NODE_12607_length_243_cov_27.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12607_length_243_cov_27.491803_pilon to pilon.fasta [pilon] Writing NODE_12608_length_243_cov_27.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12608_length_243_cov_27.483607_pilon to pilon.fasta [pilon] Writing NODE_12609_length_243_cov_27.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12609_length_243_cov_27.475410_pilon to pilon.fasta [pilon] Writing NODE_12610_length_243_cov_27.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12610_length_243_cov_27.459016_pilon to pilon.fasta [pilon] Writing NODE_12611_length_243_cov_27.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12611_length_243_cov_27.442623_pilon to pilon.fasta [pilon] Writing NODE_12612_length_243_cov_27.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12612_length_243_cov_27.434426_pilon to pilon.fasta [pilon] Writing NODE_12613_length_243_cov_27.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12613_length_243_cov_27.434426_pilon to pilon.fasta [pilon] Writing NODE_12614_length_243_cov_27.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_12614_length_243_cov_27.426230_pilon to pilon.fasta [pilon] Writing NODE_12615_length_243_cov_27.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_12615_length_243_cov_27.426230_pilon to pilon.fasta [pilon] Writing NODE_12616_length_243_cov_27.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_12616_length_243_cov_27.385246_pilon to pilon.fasta [pilon] Writing NODE_12617_length_243_cov_27.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12617_length_243_cov_27.368852_pilon to pilon.fasta [pilon] Writing NODE_12618_length_243_cov_27.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_12618_length_243_cov_27.352459_pilon to pilon.fasta [pilon] Writing NODE_12619_length_243_cov_27.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_12619_length_243_cov_27.327869_pilon to pilon.fasta [pilon] Writing NODE_12620_length_243_cov_27.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12620_length_243_cov_27.295082_pilon to pilon.fasta [pilon] Writing NODE_12621_length_243_cov_27.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12621_length_243_cov_27.286885_pilon to pilon.fasta [pilon] Writing NODE_12622_length_243_cov_27.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12622_length_243_cov_27.278689_pilon to pilon.fasta [pilon] Writing NODE_12623_length_243_cov_27.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12623_length_243_cov_27.262295_pilon to pilon.fasta [pilon] Writing NODE_12624_length_243_cov_27.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12624_length_243_cov_27.262295_pilon to pilon.fasta [pilon] Writing NODE_12625_length_243_cov_27.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12625_length_243_cov_27.245902_pilon to pilon.fasta [pilon] Writing NODE_12626_length_243_cov_27.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12626_length_243_cov_27.221311_pilon to pilon.fasta [pilon] Writing NODE_12627_length_243_cov_27.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12627_length_243_cov_27.213115_pilon to pilon.fasta [pilon] Writing NODE_12628_length_243_cov_27.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12628_length_243_cov_27.213115_pilon to pilon.fasta [pilon] Writing NODE_12629_length_243_cov_27.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12629_length_243_cov_27.204918_pilon to pilon.fasta [pilon] Writing NODE_12630_length_243_cov_27.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12630_length_243_cov_27.163934_pilon to pilon.fasta [pilon] Writing NODE_12631_length_243_cov_27.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12631_length_243_cov_27.155738_pilon to pilon.fasta [pilon] Writing NODE_12632_length_243_cov_27.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12632_length_243_cov_27.155738_pilon to pilon.fasta [pilon] Writing NODE_12633_length_243_cov_27.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12633_length_243_cov_27.098361_pilon to pilon.fasta [pilon] Writing NODE_12634_length_243_cov_27.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_12634_length_243_cov_27.090164_pilon to pilon.fasta [pilon] Writing NODE_12635_length_243_cov_27.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12635_length_243_cov_27.049180_pilon to pilon.fasta [pilon] Writing NODE_12636_length_243_cov_27.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12636_length_243_cov_27.049180_pilon to pilon.fasta [pilon] Writing NODE_12637_length_243_cov_27.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12637_length_243_cov_27.040984_pilon to pilon.fasta [pilon] Writing NODE_12638_length_243_cov_27.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12638_length_243_cov_27.032787_pilon to pilon.fasta [pilon] Writing NODE_12639_length_243_cov_26.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12639_length_243_cov_26.991803_pilon to pilon.fasta [pilon] Writing NODE_12640_length_243_cov_26.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_12640_length_243_cov_26.967213_pilon to pilon.fasta [pilon] Writing NODE_12641_length_243_cov_26.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12641_length_243_cov_26.959016_pilon to pilon.fasta [pilon] Writing NODE_12642_length_243_cov_26.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12642_length_243_cov_26.950820_pilon to pilon.fasta [pilon] Writing NODE_12643_length_243_cov_26.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12643_length_243_cov_26.942623_pilon to pilon.fasta [pilon] Writing NODE_12644_length_243_cov_26.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12644_length_243_cov_26.934426_pilon to pilon.fasta [pilon] Writing NODE_12645_length_243_cov_26.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12645_length_243_cov_26.909836_pilon to pilon.fasta [pilon] Writing NODE_12646_length_243_cov_26.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12646_length_243_cov_26.901639_pilon to pilon.fasta [pilon] Writing NODE_12647_length_243_cov_26.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12647_length_243_cov_26.893443_pilon to pilon.fasta [pilon] Writing NODE_12648_length_243_cov_26.885246:1-243 changes to pilon.changes [pilon] Writing updated NODE_12648_length_243_cov_26.885246_pilon to pilon.fasta [pilon] Writing NODE_12649_length_243_cov_26.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12649_length_243_cov_26.877049_pilon to pilon.fasta [pilon] Writing NODE_12650_length_243_cov_26.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12650_length_243_cov_26.877049_pilon to pilon.fasta [pilon] Writing NODE_12651_length_243_cov_26.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12651_length_243_cov_26.860656_pilon to pilon.fasta [pilon] Writing NODE_12652_length_243_cov_26.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12652_length_243_cov_26.860656_pilon to pilon.fasta [pilon] Writing NODE_12653_length_243_cov_26.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12653_length_243_cov_26.836066_pilon to pilon.fasta [pilon] Writing NODE_12654_length_243_cov_26.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12654_length_243_cov_26.819672_pilon to pilon.fasta [pilon] Writing NODE_12655_length_243_cov_26.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12655_length_243_cov_26.778689_pilon to pilon.fasta [pilon] Writing NODE_12656_length_243_cov_26.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_12656_length_243_cov_26.754098_pilon to pilon.fasta [pilon] Writing NODE_12657_length_243_cov_26.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12657_length_243_cov_26.745902_pilon to pilon.fasta [pilon] Writing NODE_12658_length_243_cov_26.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12658_length_243_cov_26.745902_pilon to pilon.fasta [pilon] Writing NODE_12659_length_243_cov_26.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12659_length_243_cov_26.729508_pilon to pilon.fasta [pilon] Writing NODE_12660_length_243_cov_26.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12660_length_243_cov_26.721311_pilon to pilon.fasta [pilon] Writing NODE_12661_length_243_cov_26.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12661_length_243_cov_26.696721_pilon to pilon.fasta [pilon] Writing NODE_12662_length_243_cov_26.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12662_length_243_cov_26.688525_pilon to pilon.fasta [pilon] Writing NODE_12663_length_243_cov_26.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12663_length_243_cov_26.680328_pilon to pilon.fasta [pilon] Writing NODE_12664_length_243_cov_26.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12664_length_243_cov_26.631148_pilon to pilon.fasta [pilon] Writing NODE_12665_length_243_cov_26.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12665_length_243_cov_26.622951_pilon to pilon.fasta [pilon] Writing NODE_12666_length_243_cov_26.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12666_length_243_cov_26.614754_pilon to pilon.fasta [pilon] Writing NODE_12667_length_243_cov_26.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_12667_length_243_cov_26.590164_pilon to pilon.fasta [pilon] Writing NODE_12668_length_243_cov_26.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12668_length_243_cov_26.581967_pilon to pilon.fasta [pilon] Writing NODE_12669_length_243_cov_26.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12669_length_243_cov_26.565574_pilon to pilon.fasta [pilon] Writing NODE_12670_length_243_cov_26.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12670_length_243_cov_26.565574_pilon to pilon.fasta [pilon] Writing NODE_12671_length_243_cov_26.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12671_length_243_cov_26.565574_pilon to pilon.fasta [pilon] Writing NODE_12672_length_243_cov_26.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12672_length_243_cov_26.565574_pilon to pilon.fasta [pilon] Writing NODE_12673_length_243_cov_26.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12673_length_243_cov_26.549180_pilon to pilon.fasta [pilon] Writing NODE_12674_length_243_cov_26.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12674_length_243_cov_26.500000_pilon to pilon.fasta [pilon] Writing NODE_12675_length_243_cov_26.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12675_length_243_cov_26.500000_pilon to pilon.fasta [pilon] Writing NODE_12676_length_243_cov_26.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12676_length_243_cov_26.483607_pilon to pilon.fasta [pilon] Writing NODE_12677_length_243_cov_26.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12677_length_243_cov_26.483607_pilon to pilon.fasta [pilon] Writing NODE_12678_length_243_cov_26.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_12678_length_243_cov_26.467213_pilon to pilon.fasta [pilon] Writing NODE_12679_length_243_cov_26.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_12679_length_243_cov_26.426230_pilon to pilon.fasta [pilon] Writing NODE_12680_length_243_cov_26.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_12680_length_243_cov_26.426230_pilon to pilon.fasta [pilon] Writing NODE_12681_length_243_cov_26.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12681_length_243_cov_26.409836_pilon to pilon.fasta [pilon] Writing NODE_12682_length_243_cov_26.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12682_length_243_cov_26.401639_pilon to pilon.fasta [pilon] Writing NODE_12683_length_243_cov_26.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12683_length_243_cov_26.401639_pilon to pilon.fasta [pilon] Writing NODE_12684_length_243_cov_26.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12684_length_243_cov_26.401639_pilon to pilon.fasta [pilon] Writing NODE_12685_length_243_cov_26.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12685_length_243_cov_26.401639_pilon to pilon.fasta [pilon] Writing NODE_12686_length_243_cov_26.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12686_length_243_cov_26.393443_pilon to pilon.fasta [pilon] Writing NODE_12687_length_243_cov_26.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12687_length_243_cov_26.393443_pilon to pilon.fasta [pilon] Writing NODE_12688_length_243_cov_26.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12688_length_243_cov_26.393443_pilon to pilon.fasta [pilon] Writing NODE_12689_length_243_cov_26.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12689_length_243_cov_26.377049_pilon to pilon.fasta [pilon] Writing NODE_12690_length_243_cov_26.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12690_length_243_cov_26.368852_pilon to pilon.fasta [pilon] Writing NODE_12691_length_243_cov_26.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12691_length_243_cov_26.360656_pilon to pilon.fasta [pilon] Writing NODE_12692_length_243_cov_26.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_12692_length_243_cov_26.352459_pilon to pilon.fasta [pilon] Writing NODE_12693_length_243_cov_26.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_12693_length_243_cov_26.327869_pilon to pilon.fasta [pilon] Writing NODE_12694_length_243_cov_26.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12694_length_243_cov_26.311475_pilon to pilon.fasta [pilon] Writing NODE_12695_length_243_cov_26.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12695_length_243_cov_26.303279_pilon to pilon.fasta [pilon] Writing NODE_12696_length_243_cov_26.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12696_length_243_cov_26.295082_pilon to pilon.fasta [pilon] Writing NODE_12697_length_243_cov_26.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12697_length_243_cov_26.278689_pilon to pilon.fasta [pilon] Writing NODE_12698_length_243_cov_26.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12698_length_243_cov_26.245902_pilon to pilon.fasta [pilon] Writing NODE_12699_length_243_cov_26.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_12699_length_243_cov_26.237705_pilon to pilon.fasta [pilon] Writing NODE_12700_length_243_cov_26.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12700_length_243_cov_26.204918_pilon to pilon.fasta [pilon] Writing NODE_12701_length_243_cov_26.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12701_length_243_cov_26.204918_pilon to pilon.fasta [pilon] Writing NODE_12702_length_243_cov_26.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_12702_length_243_cov_26.147541_pilon to pilon.fasta [pilon] Writing NODE_12703_length_243_cov_26.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12703_length_243_cov_26.131148_pilon to pilon.fasta [pilon] Writing NODE_12704_length_243_cov_26.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12704_length_243_cov_26.131148_pilon to pilon.fasta [pilon] Writing NODE_12705_length_243_cov_26.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12705_length_243_cov_26.122951_pilon to pilon.fasta [pilon] Writing NODE_12706_length_243_cov_26.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12706_length_243_cov_26.122951_pilon to pilon.fasta [pilon] Writing NODE_12707_length_243_cov_26.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12707_length_243_cov_26.114754_pilon to pilon.fasta [pilon] Writing NODE_12708_length_243_cov_26.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12708_length_243_cov_26.106557_pilon to pilon.fasta [pilon] Writing NODE_12709_length_243_cov_26.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12709_length_243_cov_26.106557_pilon to pilon.fasta [pilon] Writing NODE_12710_length_243_cov_26.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12710_length_243_cov_26.081967_pilon to pilon.fasta [pilon] Writing NODE_12711_length_243_cov_26.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_12711_length_243_cov_26.073770_pilon to pilon.fasta [pilon] Writing NODE_12712_length_243_cov_26.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_12712_length_243_cov_26.073770_pilon to pilon.fasta [pilon] Writing NODE_12713_length_243_cov_26.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12713_length_243_cov_26.057377_pilon to pilon.fasta [pilon] Writing NODE_12714_length_243_cov_26.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12714_length_243_cov_26.057377_pilon to pilon.fasta [pilon] Writing NODE_12715_length_243_cov_26.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12715_length_243_cov_26.040984_pilon to pilon.fasta [pilon] Writing NODE_12716_length_243_cov_26.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12716_length_243_cov_26.040984_pilon to pilon.fasta [pilon] Writing NODE_12717_length_243_cov_26.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12717_length_243_cov_26.008197_pilon to pilon.fasta [pilon] Writing NODE_12718_length_243_cov_26.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12718_length_243_cov_26.000000_pilon to pilon.fasta [pilon] Writing NODE_12719_length_243_cov_25.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12719_length_243_cov_25.983607_pilon to pilon.fasta [pilon] Writing NODE_12720_length_243_cov_25.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12720_length_243_cov_25.975410_pilon to pilon.fasta [pilon] Writing NODE_12721_length_243_cov_25.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12721_length_243_cov_25.959016_pilon to pilon.fasta [pilon] Writing NODE_12722_length_243_cov_25.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12722_length_243_cov_25.959016_pilon to pilon.fasta [pilon] Writing NODE_12723_length_243_cov_25.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_12723_length_243_cov_25.926230_pilon to pilon.fasta [pilon] Writing NODE_12724_length_243_cov_25.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_12724_length_243_cov_25.926230_pilon to pilon.fasta [pilon] Writing NODE_12725_length_243_cov_25.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_12725_length_243_cov_25.926230_pilon to pilon.fasta [pilon] Writing NODE_12726_length_243_cov_25.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12726_length_243_cov_25.909836_pilon to pilon.fasta [pilon] Writing NODE_12727_length_243_cov_25.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12727_length_243_cov_25.893443_pilon to pilon.fasta [pilon] Writing NODE_12728_length_243_cov_25.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12728_length_243_cov_25.877049_pilon to pilon.fasta [pilon] Writing NODE_12729_length_243_cov_25.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12729_length_243_cov_25.860656_pilon to pilon.fasta [pilon] Writing NODE_12730_length_243_cov_25.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12730_length_243_cov_25.811475_pilon to pilon.fasta [pilon] Writing NODE_12731_length_243_cov_25.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12731_length_243_cov_25.811475_pilon to pilon.fasta [pilon] Writing NODE_12732_length_243_cov_25.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12732_length_243_cov_25.803279_pilon to pilon.fasta [pilon] Writing NODE_12733_length_243_cov_25.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12733_length_243_cov_25.795082_pilon to pilon.fasta [pilon] Writing NODE_12734_length_243_cov_25.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12734_length_243_cov_25.795082_pilon to pilon.fasta [pilon] Writing NODE_12735_length_243_cov_25.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12735_length_243_cov_25.786885_pilon to pilon.fasta [pilon] Writing NODE_12736_length_243_cov_25.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_12736_length_243_cov_25.737705_pilon to pilon.fasta [pilon] Writing NODE_12737_length_243_cov_25.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12737_length_243_cov_25.729508_pilon to pilon.fasta [pilon] Writing NODE_12738_length_243_cov_25.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12738_length_243_cov_25.721311_pilon to pilon.fasta [pilon] Writing NODE_12739_length_243_cov_25.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12739_length_243_cov_25.696721_pilon to pilon.fasta [pilon] Writing NODE_12740_length_243_cov_25.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12740_length_243_cov_25.696721_pilon to pilon.fasta [pilon] Writing NODE_12741_length_243_cov_25.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12741_length_243_cov_25.688525_pilon to pilon.fasta [pilon] Writing NODE_12742_length_243_cov_25.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12742_length_243_cov_25.680328_pilon to pilon.fasta [pilon] Writing NODE_12743_length_243_cov_25.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12743_length_243_cov_25.655738_pilon to pilon.fasta [pilon] Writing NODE_12744_length_243_cov_25.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_12744_length_243_cov_25.647541_pilon to pilon.fasta [pilon] Writing NODE_12745_length_243_cov_25.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12745_length_243_cov_25.622951_pilon to pilon.fasta [pilon] Writing NODE_12746_length_243_cov_25.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12746_length_243_cov_25.614754_pilon to pilon.fasta [pilon] Writing NODE_12747_length_243_cov_25.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12747_length_243_cov_25.614754_pilon to pilon.fasta [pilon] Writing NODE_12748_length_243_cov_25.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12748_length_243_cov_25.598361_pilon to pilon.fasta [pilon] Writing NODE_12749_length_243_cov_25.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12749_length_243_cov_25.581967_pilon to pilon.fasta [pilon] Writing NODE_12750_length_243_cov_25.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12750_length_243_cov_25.581967_pilon to pilon.fasta [pilon] Writing NODE_12751_length_243_cov_25.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12751_length_243_cov_25.565574_pilon to pilon.fasta [pilon] Writing NODE_12752_length_243_cov_25.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12752_length_243_cov_25.565574_pilon to pilon.fasta [pilon] Writing NODE_12753_length_243_cov_25.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12753_length_243_cov_25.524590_pilon to pilon.fasta [pilon] Writing NODE_12754_length_243_cov_25.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12754_length_243_cov_25.508197_pilon to pilon.fasta [pilon] Writing NODE_12755_length_243_cov_25.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12755_length_243_cov_25.491803_pilon to pilon.fasta [pilon] Writing NODE_12756_length_243_cov_25.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12756_length_243_cov_25.483607_pilon to pilon.fasta [pilon] Writing NODE_12757_length_243_cov_25.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12757_length_243_cov_25.483607_pilon to pilon.fasta [pilon] Writing NODE_12758_length_243_cov_25.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12758_length_243_cov_25.459016_pilon to pilon.fasta [pilon] Writing NODE_12759_length_243_cov_25.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12759_length_243_cov_25.450820_pilon to pilon.fasta [pilon] Writing NODE_12760_length_243_cov_25.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12760_length_243_cov_25.450820_pilon to pilon.fasta [pilon] Writing NODE_12761_length_243_cov_25.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12761_length_243_cov_25.450820_pilon to pilon.fasta [pilon] Writing NODE_12762_length_243_cov_25.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12762_length_243_cov_25.442623_pilon to pilon.fasta [pilon] Writing NODE_12763_length_243_cov_25.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12763_length_243_cov_25.434426_pilon to pilon.fasta [pilon] Writing NODE_12764_length_243_cov_25.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_12764_length_243_cov_25.426230_pilon to pilon.fasta [pilon] Writing NODE_12765_length_243_cov_25.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12765_length_243_cov_25.409836_pilon to pilon.fasta [pilon] Writing NODE_12766_length_243_cov_25.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12766_length_243_cov_25.409836_pilon to pilon.fasta [pilon] Writing NODE_12767_length_243_cov_25.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_12767_length_243_cov_25.385246_pilon to pilon.fasta [pilon] Writing NODE_12768_length_243_cov_25.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12768_length_243_cov_25.377049_pilon to pilon.fasta [pilon] Writing NODE_12769_length_243_cov_25.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12769_length_243_cov_25.368852_pilon to pilon.fasta [pilon] Writing NODE_12770_length_243_cov_25.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12770_length_243_cov_25.360656_pilon to pilon.fasta [pilon] Writing NODE_12771_length_243_cov_25.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12771_length_243_cov_25.336066_pilon to pilon.fasta [pilon] Writing NODE_12772_length_243_cov_25.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12772_length_243_cov_25.319672_pilon to pilon.fasta [pilon] Writing NODE_12773_length_243_cov_25.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12773_length_243_cov_25.311475_pilon to pilon.fasta [pilon] Writing NODE_12774_length_243_cov_25.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12774_length_243_cov_25.311475_pilon to pilon.fasta [pilon] Writing NODE_12775_length_243_cov_25.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12775_length_243_cov_25.303279_pilon to pilon.fasta [pilon] Writing NODE_12776_length_243_cov_25.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12776_length_243_cov_25.295082_pilon to pilon.fasta [pilon] Writing NODE_12777_length_243_cov_25.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12777_length_243_cov_25.286885_pilon to pilon.fasta [pilon] Writing NODE_12778_length_243_cov_25.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12778_length_243_cov_25.270492_pilon to pilon.fasta [pilon] Writing NODE_12779_length_243_cov_25.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12779_length_243_cov_25.262295_pilon to pilon.fasta [pilon] Writing NODE_12780_length_243_cov_25.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12780_length_243_cov_25.245902_pilon to pilon.fasta [pilon] Writing NODE_12781_length_243_cov_25.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_12781_length_243_cov_25.237705_pilon to pilon.fasta [pilon] Writing NODE_12782_length_243_cov_25.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12782_length_243_cov_25.229508_pilon to pilon.fasta [pilon] Writing NODE_12783_length_243_cov_25.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12783_length_243_cov_25.221311_pilon to pilon.fasta [pilon] Writing NODE_12784_length_243_cov_25.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12784_length_243_cov_25.221311_pilon to pilon.fasta [pilon] Writing NODE_12785_length_243_cov_25.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12785_length_243_cov_25.213115_pilon to pilon.fasta [pilon] Writing NODE_12786_length_243_cov_25.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12786_length_243_cov_25.204918_pilon to pilon.fasta [pilon] Writing NODE_12787_length_243_cov_25.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12787_length_243_cov_25.139344_pilon to pilon.fasta [pilon] Writing NODE_12788_length_243_cov_25.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12788_length_243_cov_25.114754_pilon to pilon.fasta [pilon] Writing NODE_12789_length_243_cov_25.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12789_length_243_cov_25.098361_pilon to pilon.fasta [pilon] Writing NODE_12790_length_243_cov_25.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12790_length_243_cov_25.098361_pilon to pilon.fasta [pilon] Writing NODE_12791_length_243_cov_25.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_12791_length_243_cov_25.073770_pilon to pilon.fasta [pilon] Writing NODE_12792_length_243_cov_25.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12792_length_243_cov_25.065574_pilon to pilon.fasta [pilon] Writing NODE_12793_length_243_cov_25.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12793_length_243_cov_25.065574_pilon to pilon.fasta [pilon] Writing NODE_12794_length_243_cov_25.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12794_length_243_cov_25.057377_pilon to pilon.fasta [pilon] Writing NODE_12795_length_243_cov_25.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12795_length_243_cov_25.057377_pilon to pilon.fasta [pilon] Writing NODE_12796_length_243_cov_25.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12796_length_243_cov_25.057377_pilon to pilon.fasta [pilon] Writing NODE_12797_length_243_cov_25.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12797_length_243_cov_25.049180_pilon to pilon.fasta [pilon] Writing NODE_12798_length_243_cov_25.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12798_length_243_cov_25.040984_pilon to pilon.fasta [pilon] Writing NODE_12799_length_243_cov_25.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12799_length_243_cov_25.032787_pilon to pilon.fasta [pilon] Writing NODE_12800_length_243_cov_25.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12800_length_243_cov_25.032787_pilon to pilon.fasta [pilon] Writing NODE_12801_length_243_cov_25.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12801_length_243_cov_25.024590_pilon to pilon.fasta [pilon] Writing NODE_12802_length_243_cov_25.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12802_length_243_cov_25.016393_pilon to pilon.fasta [pilon] Writing NODE_12803_length_243_cov_25.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12803_length_243_cov_25.008197_pilon to pilon.fasta [pilon] Writing NODE_12804_length_243_cov_25.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12804_length_243_cov_25.000000_pilon to pilon.fasta [pilon] Writing NODE_12805_length_243_cov_25.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12805_length_243_cov_25.000000_pilon to pilon.fasta [pilon] Writing NODE_12806_length_243_cov_24.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12806_length_243_cov_24.975410_pilon to pilon.fasta [pilon] Writing NODE_12807_length_243_cov_24.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12807_length_243_cov_24.959016_pilon to pilon.fasta [pilon] Writing NODE_12808_length_243_cov_24.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12808_length_243_cov_24.959016_pilon to pilon.fasta [pilon] Writing NODE_12809_length_243_cov_24.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12809_length_243_cov_24.918033_pilon to pilon.fasta [pilon] Writing NODE_12810_length_243_cov_24.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12810_length_243_cov_24.918033_pilon to pilon.fasta [pilon] Writing NODE_12811_length_243_cov_24.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12811_length_243_cov_24.909836_pilon to pilon.fasta [pilon] Writing NODE_12812_length_243_cov_24.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12812_length_243_cov_24.893443_pilon to pilon.fasta [pilon] Writing NODE_12813_length_243_cov_24.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12813_length_243_cov_24.893443_pilon to pilon.fasta [pilon] Writing NODE_12814_length_243_cov_24.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12814_length_243_cov_24.877049_pilon to pilon.fasta [pilon] Writing NODE_12815_length_243_cov_24.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12815_length_243_cov_24.877049_pilon to pilon.fasta [pilon] Writing NODE_12816_length_243_cov_24.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12816_length_243_cov_24.868852_pilon to pilon.fasta [pilon] Writing NODE_12817_length_243_cov_24.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12817_length_243_cov_24.868852_pilon to pilon.fasta [pilon] Writing NODE_12818_length_243_cov_24.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12818_length_243_cov_24.836066_pilon to pilon.fasta [pilon] Writing NODE_12819_length_243_cov_24.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12819_length_243_cov_24.836066_pilon to pilon.fasta [pilon] Writing NODE_12820_length_243_cov_24.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12820_length_243_cov_24.836066_pilon to pilon.fasta [pilon] Writing NODE_12821_length_243_cov_24.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_12821_length_243_cov_24.827869_pilon to pilon.fasta [pilon] Writing NODE_12822_length_243_cov_24.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12822_length_243_cov_24.819672_pilon to pilon.fasta [pilon] Writing NODE_12823_length_243_cov_24.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12823_length_243_cov_24.811475_pilon to pilon.fasta [pilon] Writing NODE_12824_length_243_cov_24.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12824_length_243_cov_24.811475_pilon to pilon.fasta [pilon] Writing NODE_12825_length_243_cov_24.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12825_length_243_cov_24.803279_pilon to pilon.fasta [pilon] Writing NODE_12826_length_243_cov_24.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12826_length_243_cov_24.786885_pilon to pilon.fasta [pilon] Writing NODE_12827_length_243_cov_24.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12827_length_243_cov_24.786885_pilon to pilon.fasta [pilon] Writing NODE_12828_length_243_cov_24.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12828_length_243_cov_24.778689_pilon to pilon.fasta [pilon] Writing NODE_12829_length_243_cov_24.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12829_length_243_cov_24.778689_pilon to pilon.fasta [pilon] Writing NODE_12830_length_243_cov_24.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12830_length_243_cov_24.770492_pilon to pilon.fasta [pilon] Writing NODE_12831_length_243_cov_24.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12831_length_243_cov_24.770492_pilon to pilon.fasta [pilon] Writing NODE_12832_length_243_cov_24.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12832_length_243_cov_24.762295_pilon to pilon.fasta [pilon] Writing NODE_12833_length_243_cov_24.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12833_length_243_cov_24.762295_pilon to pilon.fasta [pilon] Writing NODE_12834_length_243_cov_24.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12834_length_243_cov_24.713115_pilon to pilon.fasta [pilon] Writing NODE_12835_length_243_cov_24.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12835_length_243_cov_24.713115_pilon to pilon.fasta [pilon] Writing NODE_12836_length_243_cov_24.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12836_length_243_cov_24.713115_pilon to pilon.fasta [pilon] Writing NODE_12837_length_243_cov_24.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12837_length_243_cov_24.713115_pilon to pilon.fasta [pilon] Writing NODE_12838_length_243_cov_24.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12838_length_243_cov_24.696721_pilon to pilon.fasta [pilon] Writing NODE_12839_length_243_cov_24.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_12839_length_243_cov_24.688525_pilon to pilon.fasta [pilon] Writing NODE_12840_length_243_cov_24.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12840_length_243_cov_24.680328_pilon to pilon.fasta [pilon] Writing NODE_12841_length_243_cov_24.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12841_length_243_cov_24.672131_pilon to pilon.fasta [pilon] Writing NODE_12842_length_243_cov_24.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_12842_length_243_cov_24.590164_pilon to pilon.fasta [pilon] Writing NODE_12843_length_243_cov_24.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12843_length_243_cov_24.581967_pilon to pilon.fasta [pilon] Writing NODE_12844_length_243_cov_24.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12844_length_243_cov_24.557377_pilon to pilon.fasta [pilon] Writing NODE_12845_length_243_cov_24.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12845_length_243_cov_24.557377_pilon to pilon.fasta [pilon] Writing NODE_12846_length_243_cov_24.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12846_length_243_cov_24.557377_pilon to pilon.fasta [pilon] Writing NODE_12847_length_243_cov_24.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12847_length_243_cov_24.549180_pilon to pilon.fasta [pilon] Writing NODE_12848_length_243_cov_24.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12848_length_243_cov_24.540984_pilon to pilon.fasta [pilon] Writing NODE_12849_length_243_cov_24.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12849_length_243_cov_24.540984_pilon to pilon.fasta [pilon] Writing NODE_12850_length_243_cov_24.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12850_length_243_cov_24.524590_pilon to pilon.fasta [pilon] Writing NODE_12851_length_243_cov_24.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12851_length_243_cov_24.524590_pilon to pilon.fasta [pilon] Writing NODE_12852_length_243_cov_24.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12852_length_243_cov_24.508197_pilon to pilon.fasta [pilon] Writing NODE_12853_length_243_cov_24.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12853_length_243_cov_24.491803_pilon to pilon.fasta [pilon] Writing NODE_12854_length_243_cov_24.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12854_length_243_cov_24.475410_pilon to pilon.fasta [pilon] Writing NODE_12855_length_243_cov_24.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12855_length_243_cov_24.475410_pilon to pilon.fasta [pilon] Writing NODE_12856_length_243_cov_24.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12856_length_243_cov_24.475410_pilon to pilon.fasta [pilon] Writing NODE_12857_length_243_cov_24.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_12857_length_243_cov_24.467213_pilon to pilon.fasta [pilon] Writing NODE_12858_length_243_cov_24.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12858_length_243_cov_24.450820_pilon to pilon.fasta [pilon] Writing NODE_12859_length_243_cov_24.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12859_length_243_cov_24.442623_pilon to pilon.fasta [pilon] Writing NODE_12860_length_243_cov_24.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12860_length_243_cov_24.434426_pilon to pilon.fasta [pilon] Writing NODE_12861_length_243_cov_24.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_12861_length_243_cov_24.385246_pilon to pilon.fasta [pilon] Writing NODE_12862_length_243_cov_24.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12862_length_243_cov_24.377049_pilon to pilon.fasta [pilon] Writing NODE_12863_length_243_cov_24.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12863_length_243_cov_24.368852_pilon to pilon.fasta [pilon] Writing NODE_12864_length_243_cov_24.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12864_length_243_cov_24.360656_pilon to pilon.fasta [pilon] Writing NODE_12865_length_243_cov_24.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_12865_length_243_cov_24.352459_pilon to pilon.fasta [pilon] Writing NODE_12866_length_243_cov_24.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12866_length_243_cov_24.336066_pilon to pilon.fasta [pilon] Writing NODE_12867_length_243_cov_24.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12867_length_243_cov_24.336066_pilon to pilon.fasta [pilon] Writing NODE_12868_length_243_cov_24.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12868_length_243_cov_24.336066_pilon to pilon.fasta [pilon] Writing NODE_12869_length_243_cov_24.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12869_length_243_cov_24.311475_pilon to pilon.fasta [pilon] Writing NODE_12870_length_243_cov_24.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_12870_length_243_cov_24.311475_pilon to pilon.fasta [pilon] Writing NODE_12871_length_243_cov_24.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_12871_length_243_cov_24.295082_pilon to pilon.fasta [pilon] Writing NODE_12872_length_243_cov_24.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12872_length_243_cov_24.278689_pilon to pilon.fasta [pilon] Writing NODE_12873_length_243_cov_24.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12873_length_243_cov_24.270492_pilon to pilon.fasta [pilon] Writing NODE_12874_length_243_cov_24.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_12874_length_243_cov_24.270492_pilon to pilon.fasta [pilon] Writing NODE_12875_length_243_cov_24.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_12875_length_243_cov_24.254098_pilon to pilon.fasta [pilon] Writing NODE_12876_length_243_cov_24.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12876_length_243_cov_24.245902_pilon to pilon.fasta [pilon] Writing NODE_12877_length_243_cov_24.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12877_length_243_cov_24.245902_pilon to pilon.fasta [pilon] Writing NODE_12878_length_243_cov_24.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_12878_length_243_cov_24.237705_pilon to pilon.fasta [pilon] Writing NODE_12879_length_243_cov_24.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12879_length_243_cov_24.229508_pilon to pilon.fasta [pilon] Writing NODE_12880_length_243_cov_24.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12880_length_243_cov_24.229508_pilon to pilon.fasta [pilon] Writing NODE_12881_length_243_cov_24.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12881_length_243_cov_24.229508_pilon to pilon.fasta [pilon] Writing NODE_12882_length_243_cov_24.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12882_length_243_cov_24.221311_pilon to pilon.fasta [pilon] Writing NODE_12883_length_243_cov_24.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12883_length_243_cov_24.221311_pilon to pilon.fasta [pilon] Writing NODE_12884_length_243_cov_24.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12884_length_243_cov_24.204918_pilon to pilon.fasta [pilon] Writing NODE_12885_length_243_cov_24.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12885_length_243_cov_24.180328_pilon to pilon.fasta [pilon] Writing NODE_12886_length_243_cov_24.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12886_length_243_cov_24.180328_pilon to pilon.fasta [pilon] Writing NODE_12887_length_243_cov_24.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_12887_length_243_cov_24.180328_pilon to pilon.fasta [pilon] Writing NODE_12888_length_243_cov_24.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12888_length_243_cov_24.172131_pilon to pilon.fasta [pilon] Writing NODE_12889_length_243_cov_24.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12889_length_243_cov_24.172131_pilon to pilon.fasta [pilon] Writing NODE_12890_length_243_cov_24.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12890_length_243_cov_24.155738_pilon to pilon.fasta [pilon] Writing NODE_12891_length_243_cov_24.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12891_length_243_cov_24.155738_pilon to pilon.fasta [pilon] Writing NODE_12892_length_243_cov_24.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_12892_length_243_cov_24.147541_pilon to pilon.fasta [pilon] Writing NODE_12893_length_243_cov_24.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12893_length_243_cov_24.131148_pilon to pilon.fasta [pilon] Writing NODE_12894_length_243_cov_24.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12894_length_243_cov_24.131148_pilon to pilon.fasta [pilon] Writing NODE_12895_length_243_cov_24.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12895_length_243_cov_24.122951_pilon to pilon.fasta [pilon] Writing NODE_12896_length_243_cov_24.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_12896_length_243_cov_24.122951_pilon to pilon.fasta [pilon] Writing NODE_12897_length_243_cov_24.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12897_length_243_cov_24.114754_pilon to pilon.fasta [pilon] Writing NODE_12898_length_243_cov_24.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_12898_length_243_cov_24.090164_pilon to pilon.fasta [pilon] Writing NODE_12899_length_243_cov_24.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_12899_length_243_cov_24.090164_pilon to pilon.fasta [pilon] Writing NODE_12900_length_243_cov_24.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_12900_length_243_cov_24.073770_pilon to pilon.fasta [pilon] Writing NODE_12901_length_243_cov_24.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12901_length_243_cov_24.065574_pilon to pilon.fasta [pilon] Writing NODE_12902_length_243_cov_24.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12902_length_243_cov_24.057377_pilon to pilon.fasta [pilon] Writing NODE_12903_length_243_cov_24.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12903_length_243_cov_24.049180_pilon to pilon.fasta [pilon] Writing NODE_12904_length_243_cov_24.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_12904_length_243_cov_24.049180_pilon to pilon.fasta [pilon] Writing NODE_12905_length_243_cov_24.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12905_length_243_cov_24.032787_pilon to pilon.fasta [pilon] Writing NODE_12906_length_243_cov_24.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12906_length_243_cov_24.032787_pilon to pilon.fasta [pilon] Writing NODE_12907_length_243_cov_24.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_12907_length_243_cov_24.032787_pilon to pilon.fasta [pilon] Writing NODE_12908_length_243_cov_24.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_12908_length_243_cov_24.016393_pilon to pilon.fasta [pilon] Writing NODE_12909_length_243_cov_24.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12909_length_243_cov_24.000000_pilon to pilon.fasta [pilon] Writing NODE_12910_length_243_cov_24.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_12910_length_243_cov_24.000000_pilon to pilon.fasta [pilon] Writing NODE_12911_length_243_cov_23.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12911_length_243_cov_23.983607_pilon to pilon.fasta [pilon] Writing NODE_12912_length_243_cov_23.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12912_length_243_cov_23.975410_pilon to pilon.fasta [pilon] Writing NODE_12913_length_243_cov_23.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12913_length_243_cov_23.959016_pilon to pilon.fasta [pilon] Writing NODE_12914_length_243_cov_23.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_12914_length_243_cov_23.942623_pilon to pilon.fasta [pilon] Writing NODE_12915_length_243_cov_23.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12915_length_243_cov_23.909836_pilon to pilon.fasta [pilon] Writing NODE_12916_length_243_cov_23.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12916_length_243_cov_23.909836_pilon to pilon.fasta [pilon] Writing NODE_12917_length_243_cov_23.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12917_length_243_cov_23.909836_pilon to pilon.fasta [pilon] Writing NODE_12918_length_243_cov_23.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12918_length_243_cov_23.877049_pilon to pilon.fasta [pilon] Writing NODE_12919_length_243_cov_23.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12919_length_243_cov_23.860656_pilon to pilon.fasta [pilon] Writing NODE_12920_length_243_cov_23.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_12920_length_243_cov_23.852459_pilon to pilon.fasta [pilon] Writing NODE_12921_length_243_cov_23.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_12921_length_243_cov_23.844262_pilon to pilon.fasta [pilon] Writing NODE_12922_length_243_cov_23.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_12922_length_243_cov_23.836066_pilon to pilon.fasta [pilon] Writing NODE_12923_length_243_cov_23.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_12923_length_243_cov_23.827869_pilon to pilon.fasta [pilon] Writing NODE_12924_length_243_cov_23.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12924_length_243_cov_23.778689_pilon to pilon.fasta [pilon] Writing NODE_12925_length_243_cov_23.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12925_length_243_cov_23.762295_pilon to pilon.fasta [pilon] Writing NODE_12926_length_243_cov_23.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_12926_length_243_cov_23.729508_pilon to pilon.fasta [pilon] Writing NODE_12927_length_243_cov_23.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12927_length_243_cov_23.721311_pilon to pilon.fasta [pilon] Writing NODE_12928_length_243_cov_23.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12928_length_243_cov_23.704918_pilon to pilon.fasta [pilon] Writing NODE_12929_length_243_cov_23.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_12929_length_243_cov_23.672131_pilon to pilon.fasta [pilon] Writing NODE_12930_length_243_cov_23.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12930_length_243_cov_23.655738_pilon to pilon.fasta [pilon] Writing NODE_12931_length_243_cov_23.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12931_length_243_cov_23.639344_pilon to pilon.fasta [pilon] Writing NODE_12932_length_243_cov_23.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12932_length_243_cov_23.614754_pilon to pilon.fasta [pilon] Writing NODE_12933_length_243_cov_23.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12933_length_243_cov_23.606557_pilon to pilon.fasta [pilon] Writing NODE_12934_length_243_cov_23.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12934_length_243_cov_23.598361_pilon to pilon.fasta [pilon] Writing NODE_12935_length_243_cov_23.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_12935_length_243_cov_23.590164_pilon to pilon.fasta [pilon] Writing NODE_12936_length_243_cov_23.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_12936_length_243_cov_23.573770_pilon to pilon.fasta [pilon] Writing NODE_12937_length_243_cov_23.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12937_length_243_cov_23.565574_pilon to pilon.fasta [pilon] Writing NODE_12938_length_243_cov_23.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12938_length_243_cov_23.565574_pilon to pilon.fasta [pilon] Writing NODE_12939_length_243_cov_23.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_12939_length_243_cov_23.565574_pilon to pilon.fasta [pilon] Writing NODE_12940_length_243_cov_23.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_12940_length_243_cov_23.557377_pilon to pilon.fasta [pilon] Writing NODE_12941_length_243_cov_23.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12941_length_243_cov_23.524590_pilon to pilon.fasta [pilon] Writing NODE_12942_length_243_cov_23.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12942_length_243_cov_23.475410_pilon to pilon.fasta [pilon] Writing NODE_12943_length_243_cov_23.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12943_length_243_cov_23.475410_pilon to pilon.fasta [pilon] Writing NODE_12944_length_243_cov_23.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_12944_length_243_cov_23.475410_pilon to pilon.fasta [pilon] Writing NODE_12945_length_243_cov_23.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_12945_length_243_cov_23.467213_pilon to pilon.fasta [pilon] Writing NODE_12946_length_243_cov_23.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_12946_length_243_cov_23.459016_pilon to pilon.fasta [pilon] Writing NODE_12947_length_243_cov_23.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12947_length_243_cov_23.450820_pilon to pilon.fasta [pilon] Writing NODE_12948_length_243_cov_23.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_12948_length_243_cov_23.450820_pilon to pilon.fasta [pilon] Writing NODE_12949_length_243_cov_23.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12949_length_243_cov_23.418033_pilon to pilon.fasta [pilon] Writing NODE_12950_length_243_cov_23.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_12950_length_243_cov_23.409836_pilon to pilon.fasta [pilon] Writing NODE_12951_length_243_cov_23.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12951_length_243_cov_23.401639_pilon to pilon.fasta [pilon] Writing NODE_12952_length_243_cov_23.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_12952_length_243_cov_23.401639_pilon to pilon.fasta [pilon] Writing NODE_12953_length_243_cov_23.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_12953_length_243_cov_23.393443_pilon to pilon.fasta [pilon] Writing NODE_12954_length_243_cov_23.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_12954_length_243_cov_23.385246_pilon to pilon.fasta [pilon] Writing NODE_12955_length_243_cov_23.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_12955_length_243_cov_23.385246_pilon to pilon.fasta [pilon] Writing NODE_12956_length_243_cov_23.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_12956_length_243_cov_23.385246_pilon to pilon.fasta [pilon] Writing NODE_12957_length_243_cov_23.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12957_length_243_cov_23.377049_pilon to pilon.fasta [pilon] Writing NODE_12958_length_243_cov_23.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_12958_length_243_cov_23.377049_pilon to pilon.fasta [pilon] Writing NODE_12959_length_243_cov_23.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_12959_length_243_cov_23.368852_pilon to pilon.fasta [pilon] Writing NODE_12960_length_243_cov_23.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_12960_length_243_cov_23.360656_pilon to pilon.fasta [pilon] Writing NODE_12961_length_243_cov_23.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_12961_length_243_cov_23.344262_pilon to pilon.fasta [pilon] Writing NODE_12962_length_243_cov_23.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_12962_length_243_cov_23.327869_pilon to pilon.fasta [pilon] Writing NODE_12963_length_243_cov_23.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_12963_length_243_cov_23.327869_pilon to pilon.fasta [pilon] Writing NODE_12964_length_243_cov_23.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12964_length_243_cov_23.319672_pilon to pilon.fasta [pilon] Writing NODE_12965_length_243_cov_23.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_12965_length_243_cov_23.319672_pilon to pilon.fasta [pilon] Writing NODE_12966_length_243_cov_23.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_12966_length_243_cov_23.303279_pilon to pilon.fasta [pilon] Writing NODE_12967_length_243_cov_23.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_12967_length_243_cov_23.286885_pilon to pilon.fasta [pilon] Writing NODE_12968_length_243_cov_23.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_12968_length_243_cov_23.278689_pilon to pilon.fasta [pilon] Writing NODE_12969_length_243_cov_23.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_12969_length_243_cov_23.262295_pilon to pilon.fasta [pilon] Writing NODE_12970_length_243_cov_23.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12970_length_243_cov_23.245902_pilon to pilon.fasta [pilon] Writing NODE_12971_length_243_cov_23.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_12971_length_243_cov_23.245902_pilon to pilon.fasta [pilon] Writing NODE_12972_length_243_cov_23.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12972_length_243_cov_23.221311_pilon to pilon.fasta [pilon] Writing NODE_12973_length_243_cov_23.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12973_length_243_cov_23.221311_pilon to pilon.fasta [pilon] Writing NODE_12974_length_243_cov_23.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12974_length_243_cov_23.221311_pilon to pilon.fasta [pilon] Writing NODE_12975_length_243_cov_23.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_12975_length_243_cov_23.221311_pilon to pilon.fasta [pilon] Writing NODE_12976_length_243_cov_23.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_12976_length_243_cov_23.213115_pilon to pilon.fasta [pilon] Writing NODE_12977_length_243_cov_23.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_12977_length_243_cov_23.204918_pilon to pilon.fasta [pilon] Writing NODE_12978_length_243_cov_23.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_12978_length_243_cov_23.196721_pilon to pilon.fasta [pilon] Writing NODE_12979_length_243_cov_23.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_12979_length_243_cov_23.163934_pilon to pilon.fasta [pilon] Writing NODE_12980_length_243_cov_23.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_12980_length_243_cov_23.155738_pilon to pilon.fasta [pilon] Writing NODE_12981_length_243_cov_23.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_12981_length_243_cov_23.147541_pilon to pilon.fasta [pilon] Writing NODE_12982_length_243_cov_23.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_12982_length_243_cov_23.139344_pilon to pilon.fasta [pilon] Writing NODE_12983_length_243_cov_23.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_12983_length_243_cov_23.131148_pilon to pilon.fasta [pilon] Writing NODE_12984_length_243_cov_23.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_12984_length_243_cov_23.114754_pilon to pilon.fasta [pilon] Writing NODE_12985_length_243_cov_23.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_12985_length_243_cov_23.106557_pilon to pilon.fasta [pilon] Writing NODE_12986_length_243_cov_23.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_12986_length_243_cov_23.098361_pilon to pilon.fasta [pilon] Writing NODE_12987_length_243_cov_23.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12987_length_243_cov_23.081967_pilon to pilon.fasta [pilon] Writing NODE_12988_length_243_cov_23.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_12988_length_243_cov_23.081967_pilon to pilon.fasta [pilon] Writing NODE_12989_length_243_cov_23.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_12989_length_243_cov_23.073770_pilon to pilon.fasta [pilon] Writing NODE_12990_length_243_cov_23.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_12990_length_243_cov_23.040984_pilon to pilon.fasta [pilon] Writing NODE_12991_length_243_cov_23.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12991_length_243_cov_23.024590_pilon to pilon.fasta [pilon] Writing NODE_12992_length_243_cov_23.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_12992_length_243_cov_23.024590_pilon to pilon.fasta [pilon] Writing NODE_12993_length_243_cov_23.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_12993_length_243_cov_23.008197_pilon to pilon.fasta [pilon] Writing NODE_12994_length_243_cov_22.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_12994_length_243_cov_22.991803_pilon to pilon.fasta [pilon] Writing NODE_12995_length_243_cov_22.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_12995_length_243_cov_22.983607_pilon to pilon.fasta [pilon] Writing NODE_12996_length_243_cov_22.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_12996_length_243_cov_22.967213_pilon to pilon.fasta [pilon] Writing NODE_12997_length_243_cov_22.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_12997_length_243_cov_22.934426_pilon to pilon.fasta [pilon] Writing NODE_12998_length_243_cov_22.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_12998_length_243_cov_22.926230_pilon to pilon.fasta [pilon] Writing NODE_12999_length_243_cov_22.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_12999_length_243_cov_22.918033_pilon to pilon.fasta [pilon] Writing NODE_13000_length_243_cov_22.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_13000_length_243_cov_22.909836_pilon to pilon.fasta [pilon] Writing NODE_13001_length_243_cov_22.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13001_length_243_cov_22.901639_pilon to pilon.fasta [pilon] Writing NODE_13002_length_243_cov_22.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13002_length_243_cov_22.901639_pilon to pilon.fasta [pilon] Writing NODE_13003_length_243_cov_22.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13003_length_243_cov_22.877049_pilon to pilon.fasta [pilon] Writing NODE_13004_length_243_cov_22.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13004_length_243_cov_22.852459_pilon to pilon.fasta [pilon] Writing NODE_13005_length_243_cov_22.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13005_length_243_cov_22.844262_pilon to pilon.fasta [pilon] Writing NODE_13006_length_243_cov_22.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13006_length_243_cov_22.844262_pilon to pilon.fasta [pilon] Writing NODE_13007_length_243_cov_22.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13007_length_243_cov_22.844262_pilon to pilon.fasta [pilon] Writing NODE_13008_length_243_cov_22.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13008_length_243_cov_22.844262_pilon to pilon.fasta [pilon] Writing NODE_13009_length_243_cov_22.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13009_length_243_cov_22.844262_pilon to pilon.fasta [pilon] Writing NODE_13010_length_243_cov_22.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13010_length_243_cov_22.827869_pilon to pilon.fasta [pilon] Writing NODE_13011_length_243_cov_22.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13011_length_243_cov_22.786885_pilon to pilon.fasta [pilon] Writing NODE_13012_length_243_cov_22.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13012_length_243_cov_22.778689_pilon to pilon.fasta [pilon] Writing NODE_13013_length_243_cov_22.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13013_length_243_cov_22.770492_pilon to pilon.fasta [pilon] Writing NODE_13014_length_243_cov_22.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13014_length_243_cov_22.762295_pilon to pilon.fasta [pilon] Writing NODE_13015_length_243_cov_22.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13015_length_243_cov_22.754098_pilon to pilon.fasta [pilon] Writing NODE_13016_length_243_cov_22.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13016_length_243_cov_22.754098_pilon to pilon.fasta [pilon] Writing NODE_13017_length_243_cov_22.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13017_length_243_cov_22.754098_pilon to pilon.fasta [pilon] Writing NODE_13018_length_243_cov_22.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13018_length_243_cov_22.754098_pilon to pilon.fasta [pilon] Writing NODE_13019_length_243_cov_22.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13019_length_243_cov_22.737705_pilon to pilon.fasta [pilon] Writing NODE_13020_length_243_cov_22.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13020_length_243_cov_22.721311_pilon to pilon.fasta [pilon] Writing NODE_13021_length_243_cov_22.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13021_length_243_cov_22.713115_pilon to pilon.fasta [pilon] Writing NODE_13022_length_243_cov_22.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13022_length_243_cov_22.704918_pilon to pilon.fasta [pilon] Writing NODE_13023_length_243_cov_22.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13023_length_243_cov_22.688525_pilon to pilon.fasta [pilon] Writing NODE_13024_length_243_cov_22.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13024_length_243_cov_22.688525_pilon to pilon.fasta [pilon] Writing NODE_13025_length_243_cov_22.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13025_length_243_cov_22.672131_pilon to pilon.fasta [pilon] Writing NODE_13026_length_243_cov_22.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13026_length_243_cov_22.655738_pilon to pilon.fasta [pilon] Writing NODE_13027_length_243_cov_22.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13027_length_243_cov_22.647541_pilon to pilon.fasta [pilon] Writing NODE_13028_length_243_cov_22.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13028_length_243_cov_22.647541_pilon to pilon.fasta [pilon] Writing NODE_13029_length_243_cov_22.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13029_length_243_cov_22.631148_pilon to pilon.fasta [pilon] Writing NODE_13030_length_243_cov_22.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13030_length_243_cov_22.631148_pilon to pilon.fasta [pilon] Writing NODE_13031_length_243_cov_22.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13031_length_243_cov_22.631148_pilon to pilon.fasta [pilon] Writing NODE_13032_length_243_cov_22.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13032_length_243_cov_22.622951_pilon to pilon.fasta [pilon] Writing NODE_13033_length_243_cov_22.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13033_length_243_cov_22.614754_pilon to pilon.fasta [pilon] Writing NODE_13034_length_243_cov_22.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13034_length_243_cov_22.606557_pilon to pilon.fasta [pilon] Writing NODE_13035_length_243_cov_22.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13035_length_243_cov_22.565574_pilon to pilon.fasta [pilon] Writing NODE_13036_length_243_cov_22.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_13036_length_243_cov_22.557377_pilon to pilon.fasta [pilon] Writing NODE_13037_length_243_cov_22.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_13037_length_243_cov_22.557377_pilon to pilon.fasta [pilon] Writing NODE_13038_length_243_cov_22.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13038_length_243_cov_22.549180_pilon to pilon.fasta [pilon] Writing NODE_13039_length_243_cov_22.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13039_length_243_cov_22.540984_pilon to pilon.fasta [pilon] Writing NODE_13040_length_243_cov_22.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13040_length_243_cov_22.540984_pilon to pilon.fasta [pilon] Writing NODE_13041_length_243_cov_22.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13041_length_243_cov_22.524590_pilon to pilon.fasta [pilon] Writing NODE_13042_length_243_cov_22.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13042_length_243_cov_22.516393_pilon to pilon.fasta [pilon] Writing NODE_13043_length_243_cov_22.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13043_length_243_cov_22.491803_pilon to pilon.fasta [pilon] Writing NODE_13044_length_243_cov_22.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13044_length_243_cov_22.475410_pilon to pilon.fasta [pilon] Writing NODE_13045_length_243_cov_22.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13045_length_243_cov_22.475410_pilon to pilon.fasta [pilon] Writing NODE_13046_length_243_cov_22.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13046_length_243_cov_22.450820_pilon to pilon.fasta [pilon] Writing NODE_13047_length_243_cov_22.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_13047_length_243_cov_22.442623_pilon to pilon.fasta [pilon] Writing NODE_13048_length_243_cov_22.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_13048_length_243_cov_22.442623_pilon to pilon.fasta [pilon] Writing NODE_13049_length_243_cov_22.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13049_length_243_cov_22.434426_pilon to pilon.fasta [pilon] Writing NODE_13050_length_243_cov_22.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13050_length_243_cov_22.418033_pilon to pilon.fasta [pilon] Writing NODE_13051_length_243_cov_22.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13051_length_243_cov_22.377049_pilon to pilon.fasta [pilon] Writing NODE_13052_length_243_cov_22.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13052_length_243_cov_22.368852_pilon to pilon.fasta [pilon] Writing NODE_13053_length_243_cov_22.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13053_length_243_cov_22.368852_pilon to pilon.fasta [pilon] Writing NODE_13054_length_243_cov_22.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13054_length_243_cov_22.360656_pilon to pilon.fasta [pilon] Writing NODE_13055_length_243_cov_22.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13055_length_243_cov_22.360656_pilon to pilon.fasta [pilon] Writing NODE_13056_length_243_cov_22.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13056_length_243_cov_22.360656_pilon to pilon.fasta [pilon] Writing NODE_13057_length_243_cov_22.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13057_length_243_cov_22.336066_pilon to pilon.fasta [pilon] Writing NODE_13058_length_243_cov_22.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13058_length_243_cov_22.336066_pilon to pilon.fasta [pilon] Writing NODE_13059_length_243_cov_22.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13059_length_243_cov_22.311475_pilon to pilon.fasta [pilon] Writing NODE_13060_length_243_cov_22.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13060_length_243_cov_22.311475_pilon to pilon.fasta [pilon] Writing NODE_13061_length_243_cov_22.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13061_length_243_cov_22.311475_pilon to pilon.fasta [pilon] Writing NODE_13062_length_243_cov_22.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13062_length_243_cov_22.303279_pilon to pilon.fasta [pilon] Writing NODE_13063_length_243_cov_22.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13063_length_243_cov_22.270492_pilon to pilon.fasta [pilon] Writing NODE_13064_length_243_cov_22.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13064_length_243_cov_22.262295_pilon to pilon.fasta [pilon] Writing NODE_13065_length_243_cov_22.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13065_length_243_cov_22.262295_pilon to pilon.fasta [pilon] Writing NODE_13066_length_243_cov_22.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13066_length_243_cov_22.262295_pilon to pilon.fasta [pilon] Writing NODE_13067_length_243_cov_22.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13067_length_243_cov_22.245902_pilon to pilon.fasta [pilon] Writing NODE_13068_length_243_cov_22.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13068_length_243_cov_22.245902_pilon to pilon.fasta [pilon] Writing NODE_13069_length_243_cov_22.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13069_length_243_cov_22.245902_pilon to pilon.fasta [pilon] Writing NODE_13070_length_243_cov_22.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13070_length_243_cov_22.237705_pilon to pilon.fasta [pilon] Writing NODE_13071_length_243_cov_22.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13071_length_243_cov_22.229508_pilon to pilon.fasta [pilon] Writing NODE_13072_length_243_cov_22.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13072_length_243_cov_22.204918_pilon to pilon.fasta [pilon] Writing NODE_13073_length_243_cov_22.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13073_length_243_cov_22.204918_pilon to pilon.fasta [pilon] Writing NODE_13074_length_243_cov_22.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13074_length_243_cov_22.196721_pilon to pilon.fasta [pilon] Writing NODE_13075_length_243_cov_22.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13075_length_243_cov_22.188525_pilon to pilon.fasta [pilon] Writing NODE_13076_length_243_cov_22.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13076_length_243_cov_22.180328_pilon to pilon.fasta [pilon] Writing NODE_13077_length_243_cov_22.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13077_length_243_cov_22.172131_pilon to pilon.fasta [pilon] Writing NODE_13078_length_243_cov_22.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13078_length_243_cov_22.147541_pilon to pilon.fasta [pilon] Writing NODE_13079_length_243_cov_22.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13079_length_243_cov_22.139344_pilon to pilon.fasta [pilon] Writing NODE_13080_length_243_cov_22.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13080_length_243_cov_22.131148_pilon to pilon.fasta [pilon] Writing NODE_13081_length_243_cov_22.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13081_length_243_cov_22.114754_pilon to pilon.fasta [pilon] Writing NODE_13082_length_243_cov_22.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13082_length_243_cov_22.106557_pilon to pilon.fasta [pilon] Writing NODE_13083_length_243_cov_22.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13083_length_243_cov_22.098361_pilon to pilon.fasta [pilon] Writing NODE_13084_length_243_cov_22.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13084_length_243_cov_22.098361_pilon to pilon.fasta [pilon] Writing NODE_13085_length_243_cov_22.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13085_length_243_cov_22.090164_pilon to pilon.fasta [pilon] Writing NODE_13086_length_243_cov_22.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13086_length_243_cov_22.081967_pilon to pilon.fasta [pilon] Writing NODE_13087_length_243_cov_22.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13087_length_243_cov_22.073770_pilon to pilon.fasta [pilon] Writing NODE_13088_length_243_cov_22.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_13088_length_243_cov_22.057377_pilon to pilon.fasta [pilon] Writing NODE_13089_length_243_cov_22.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_13089_length_243_cov_22.057377_pilon to pilon.fasta [pilon] Writing NODE_13090_length_243_cov_22.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_13090_length_243_cov_22.057377_pilon to pilon.fasta [pilon] Writing NODE_13091_length_243_cov_22.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13091_length_243_cov_22.040984_pilon to pilon.fasta [pilon] Writing NODE_13092_length_243_cov_22.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13092_length_243_cov_22.040984_pilon to pilon.fasta [pilon] Writing NODE_13093_length_243_cov_22.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13093_length_243_cov_22.032787_pilon to pilon.fasta [pilon] Writing NODE_13094_length_243_cov_22.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13094_length_243_cov_22.016393_pilon to pilon.fasta [pilon] Writing NODE_13095_length_243_cov_22.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13095_length_243_cov_22.016393_pilon to pilon.fasta [pilon] Writing NODE_13096_length_243_cov_22.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13096_length_243_cov_22.008197_pilon to pilon.fasta [pilon] Writing NODE_13097_length_243_cov_22.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_13097_length_243_cov_22.000000_pilon to pilon.fasta [pilon] Writing NODE_13098_length_243_cov_22.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_13098_length_243_cov_22.000000_pilon to pilon.fasta [pilon] Writing NODE_13099_length_243_cov_22.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_13099_length_243_cov_22.000000_pilon to pilon.fasta [pilon] Writing NODE_13100_length_243_cov_21.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_13100_length_243_cov_21.942623_pilon to pilon.fasta [pilon] Writing NODE_13101_length_243_cov_21.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13101_length_243_cov_21.934426_pilon to pilon.fasta [pilon] Writing NODE_13102_length_243_cov_21.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13102_length_243_cov_21.918033_pilon to pilon.fasta [pilon] Writing NODE_13103_length_243_cov_21.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13103_length_243_cov_21.918033_pilon to pilon.fasta [pilon] Writing NODE_13104_length_243_cov_21.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_13104_length_243_cov_21.909836_pilon to pilon.fasta [pilon] Writing NODE_13105_length_243_cov_21.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13105_length_243_cov_21.901639_pilon to pilon.fasta [pilon] Writing NODE_13106_length_243_cov_21.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13106_length_243_cov_21.901639_pilon to pilon.fasta [pilon] Writing NODE_13107_length_243_cov_21.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13107_length_243_cov_21.893443_pilon to pilon.fasta [pilon] Writing NODE_13108_length_243_cov_21.885246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13108_length_243_cov_21.885246_pilon to pilon.fasta [pilon] Writing NODE_13109_length_243_cov_21.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13109_length_243_cov_21.868852_pilon to pilon.fasta [pilon] Writing NODE_13110_length_243_cov_21.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13110_length_243_cov_21.868852_pilon to pilon.fasta [pilon] Writing NODE_13111_length_243_cov_21.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13111_length_243_cov_21.868852_pilon to pilon.fasta [pilon] Writing NODE_13112_length_243_cov_21.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13112_length_243_cov_21.860656_pilon to pilon.fasta [pilon] Writing NODE_13113_length_243_cov_21.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13113_length_243_cov_21.852459_pilon to pilon.fasta [pilon] Writing NODE_13114_length_243_cov_21.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13114_length_243_cov_21.844262_pilon to pilon.fasta [pilon] Writing NODE_13115_length_243_cov_21.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13115_length_243_cov_21.836066_pilon to pilon.fasta [pilon] Writing NODE_13116_length_243_cov_21.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13116_length_243_cov_21.827869_pilon to pilon.fasta [pilon] Writing NODE_13117_length_243_cov_21.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13117_length_243_cov_21.819672_pilon to pilon.fasta [pilon] Writing NODE_13118_length_243_cov_21.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13118_length_243_cov_21.819672_pilon to pilon.fasta [pilon] Writing NODE_13119_length_243_cov_21.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13119_length_243_cov_21.811475_pilon to pilon.fasta [pilon] Writing NODE_13120_length_243_cov_21.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13120_length_243_cov_21.811475_pilon to pilon.fasta [pilon] Writing NODE_13121_length_243_cov_21.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13121_length_243_cov_21.803279_pilon to pilon.fasta [pilon] Writing NODE_13122_length_243_cov_21.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13122_length_243_cov_21.762295_pilon to pilon.fasta [pilon] Writing NODE_13123_length_243_cov_21.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13123_length_243_cov_21.762295_pilon to pilon.fasta [pilon] Writing NODE_13124_length_243_cov_21.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13124_length_243_cov_21.754098_pilon to pilon.fasta [pilon] Writing NODE_13125_length_243_cov_21.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13125_length_243_cov_21.737705_pilon to pilon.fasta [pilon] Writing NODE_13126_length_243_cov_21.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13126_length_243_cov_21.704918_pilon to pilon.fasta [pilon] Writing NODE_13127_length_243_cov_21.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13127_length_243_cov_21.688525_pilon to pilon.fasta [pilon] Writing NODE_13128_length_243_cov_21.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13128_length_243_cov_21.680328_pilon to pilon.fasta [pilon] Writing NODE_13129_length_243_cov_21.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13129_length_243_cov_21.680328_pilon to pilon.fasta [pilon] Writing NODE_13130_length_243_cov_21.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_13130_length_243_cov_21.663934_pilon to pilon.fasta [pilon] Writing NODE_13131_length_243_cov_21.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_13131_length_243_cov_21.663934_pilon to pilon.fasta [pilon] Writing NODE_13132_length_243_cov_21.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13132_length_243_cov_21.655738_pilon to pilon.fasta [pilon] Writing NODE_13133_length_243_cov_21.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13133_length_243_cov_21.655738_pilon to pilon.fasta [pilon] Writing NODE_13134_length_243_cov_21.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13134_length_243_cov_21.647541_pilon to pilon.fasta [pilon] Writing NODE_13135_length_243_cov_21.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13135_length_243_cov_21.647541_pilon to pilon.fasta [pilon] Writing NODE_13136_length_243_cov_21.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13136_length_243_cov_21.631148_pilon to pilon.fasta [pilon] Writing NODE_13137_length_243_cov_21.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13137_length_243_cov_21.631148_pilon to pilon.fasta [pilon] Writing NODE_13138_length_243_cov_21.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13138_length_243_cov_21.622951_pilon to pilon.fasta [pilon] Writing NODE_13139_length_243_cov_21.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13139_length_243_cov_21.622951_pilon to pilon.fasta [pilon] Writing NODE_13140_length_243_cov_21.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13140_length_243_cov_21.614754_pilon to pilon.fasta [pilon] Writing NODE_13141_length_243_cov_21.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13141_length_243_cov_21.606557_pilon to pilon.fasta [pilon] Writing NODE_13142_length_243_cov_21.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13142_length_243_cov_21.606557_pilon to pilon.fasta [pilon] Writing NODE_13143_length_243_cov_21.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13143_length_243_cov_21.606557_pilon to pilon.fasta [pilon] Writing NODE_13144_length_243_cov_21.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13144_length_243_cov_21.549180_pilon to pilon.fasta [pilon] Writing NODE_13145_length_243_cov_21.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13145_length_243_cov_21.549180_pilon to pilon.fasta [pilon] Writing NODE_13146_length_243_cov_21.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13146_length_243_cov_21.532787_pilon to pilon.fasta [pilon] Writing NODE_13147_length_243_cov_21.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13147_length_243_cov_21.532787_pilon to pilon.fasta [pilon] Writing NODE_13148_length_243_cov_21.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13148_length_243_cov_21.516393_pilon to pilon.fasta [pilon] Writing NODE_13149_length_243_cov_21.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13149_length_243_cov_21.516393_pilon to pilon.fasta [pilon] Writing NODE_13150_length_243_cov_21.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13150_length_243_cov_21.508197_pilon to pilon.fasta [pilon] Writing NODE_13151_length_243_cov_21.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13151_length_243_cov_21.508197_pilon to pilon.fasta [pilon] Writing NODE_13152_length_243_cov_21.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13152_length_243_cov_21.508197_pilon to pilon.fasta [pilon] Writing NODE_13153_length_243_cov_21.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13153_length_243_cov_21.491803_pilon to pilon.fasta [pilon] Writing NODE_13154_length_243_cov_21.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13154_length_243_cov_21.483607_pilon to pilon.fasta [pilon] Writing NODE_13155_length_243_cov_21.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13155_length_243_cov_21.483607_pilon to pilon.fasta [pilon] Writing NODE_13156_length_243_cov_21.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13156_length_243_cov_21.475410_pilon to pilon.fasta [pilon] Writing NODE_13157_length_243_cov_21.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13157_length_243_cov_21.467213_pilon to pilon.fasta [pilon] Writing NODE_13158_length_243_cov_21.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13158_length_243_cov_21.467213_pilon to pilon.fasta [pilon] Writing NODE_13159_length_243_cov_21.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13159_length_243_cov_21.450820_pilon to pilon.fasta [pilon] Writing NODE_13160_length_243_cov_21.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13160_length_243_cov_21.450820_pilon to pilon.fasta [pilon] Writing NODE_13161_length_243_cov_21.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_13161_length_243_cov_21.442623_pilon to pilon.fasta [pilon] Writing NODE_13162_length_243_cov_21.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13162_length_243_cov_21.434426_pilon to pilon.fasta [pilon] Writing NODE_13163_length_243_cov_21.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13163_length_243_cov_21.434426_pilon to pilon.fasta [pilon] Writing NODE_13164_length_243_cov_21.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13164_length_243_cov_21.393443_pilon to pilon.fasta [pilon] Writing NODE_13165_length_243_cov_21.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13165_length_243_cov_21.385246_pilon to pilon.fasta [pilon] Writing NODE_13166_length_243_cov_21.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13166_length_243_cov_21.377049_pilon to pilon.fasta [pilon] Writing NODE_13167_length_243_cov_21.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13167_length_243_cov_21.377049_pilon to pilon.fasta [pilon] Writing NODE_13168_length_243_cov_21.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13168_length_243_cov_21.368852_pilon to pilon.fasta [pilon] Writing NODE_13169_length_243_cov_21.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13169_length_243_cov_21.368852_pilon to pilon.fasta [pilon] Writing NODE_13170_length_243_cov_21.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13170_length_243_cov_21.368852_pilon to pilon.fasta [pilon] Writing NODE_13171_length_243_cov_21.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13171_length_243_cov_21.360656_pilon to pilon.fasta [pilon] Writing NODE_13172_length_243_cov_21.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13172_length_243_cov_21.360656_pilon to pilon.fasta [pilon] Writing NODE_13173_length_243_cov_21.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13173_length_243_cov_21.352459_pilon to pilon.fasta [pilon] Writing NODE_13174_length_243_cov_21.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13174_length_243_cov_21.336066_pilon to pilon.fasta [pilon] Writing NODE_13175_length_243_cov_21.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13175_length_243_cov_21.311475_pilon to pilon.fasta [pilon] Writing NODE_13176_length_243_cov_21.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13176_length_243_cov_21.303279_pilon to pilon.fasta [pilon] Writing NODE_13177_length_243_cov_21.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13177_length_243_cov_21.303279_pilon to pilon.fasta [pilon] Writing NODE_13178_length_243_cov_21.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13178_length_243_cov_21.303279_pilon to pilon.fasta [pilon] Writing NODE_13179_length_243_cov_21.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13179_length_243_cov_21.295082_pilon to pilon.fasta [pilon] Writing NODE_13180_length_243_cov_21.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13180_length_243_cov_21.278689_pilon to pilon.fasta [pilon] Writing NODE_13181_length_243_cov_21.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13181_length_243_cov_21.270492_pilon to pilon.fasta [pilon] Writing NODE_13182_length_243_cov_21.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13182_length_243_cov_21.254098_pilon to pilon.fasta [pilon] Writing NODE_13183_length_243_cov_21.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13183_length_243_cov_21.254098_pilon to pilon.fasta [pilon] Writing NODE_13184_length_243_cov_21.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13184_length_243_cov_21.237705_pilon to pilon.fasta [pilon] Writing NODE_13185_length_243_cov_21.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13185_length_243_cov_21.229508_pilon to pilon.fasta [pilon] Writing NODE_13186_length_243_cov_21.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13186_length_243_cov_21.221311_pilon to pilon.fasta [pilon] Writing NODE_13187_length_243_cov_21.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13187_length_243_cov_21.213115_pilon to pilon.fasta [pilon] Writing NODE_13188_length_243_cov_21.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13188_length_243_cov_21.188525_pilon to pilon.fasta [pilon] Writing NODE_13189_length_243_cov_21.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13189_length_243_cov_21.188525_pilon to pilon.fasta [pilon] Writing NODE_13190_length_243_cov_21.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13190_length_243_cov_21.188525_pilon to pilon.fasta [pilon] Writing NODE_13191_length_243_cov_21.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13191_length_243_cov_21.188525_pilon to pilon.fasta [pilon] Writing NODE_13192_length_243_cov_21.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13192_length_243_cov_21.180328_pilon to pilon.fasta [pilon] Writing NODE_13193_length_243_cov_21.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13193_length_243_cov_21.155738_pilon to pilon.fasta [pilon] Writing NODE_13194_length_243_cov_21.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13194_length_243_cov_21.139344_pilon to pilon.fasta [pilon] Writing NODE_13195_length_243_cov_21.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13195_length_243_cov_21.131148_pilon to pilon.fasta [pilon] Writing NODE_13196_length_243_cov_21.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13196_length_243_cov_21.122951_pilon to pilon.fasta [pilon] Writing NODE_13197_length_243_cov_21.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13197_length_243_cov_21.114754_pilon to pilon.fasta [pilon] Writing NODE_13198_length_243_cov_21.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13198_length_243_cov_21.114754_pilon to pilon.fasta [pilon] Writing NODE_13199_length_243_cov_21.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13199_length_243_cov_21.098361_pilon to pilon.fasta [pilon] Writing NODE_13200_length_243_cov_21.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13200_length_243_cov_21.090164_pilon to pilon.fasta [pilon] Writing NODE_13201_length_243_cov_21.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13201_length_243_cov_21.073770_pilon to pilon.fasta [pilon] Writing NODE_13202_length_243_cov_21.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13202_length_243_cov_21.073770_pilon to pilon.fasta [pilon] Writing NODE_13203_length_243_cov_21.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_13203_length_243_cov_21.057377_pilon to pilon.fasta [pilon] Writing NODE_13204_length_243_cov_21.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13204_length_243_cov_21.049180_pilon to pilon.fasta [pilon] Writing NODE_13205_length_243_cov_21.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13205_length_243_cov_21.024590_pilon to pilon.fasta [pilon] Writing NODE_13206_length_243_cov_21.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13206_length_243_cov_21.024590_pilon to pilon.fasta [pilon] Writing NODE_13207_length_243_cov_21.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13207_length_243_cov_21.008197_pilon to pilon.fasta [pilon] Writing NODE_13208_length_243_cov_20.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13208_length_243_cov_20.991803_pilon to pilon.fasta [pilon] Writing NODE_13209_length_243_cov_20.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13209_length_243_cov_20.983607_pilon to pilon.fasta [pilon] Writing NODE_13210_length_243_cov_20.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13210_length_243_cov_20.983607_pilon to pilon.fasta [pilon] Writing NODE_13211_length_243_cov_20.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13211_length_243_cov_20.975410_pilon to pilon.fasta [pilon] Writing NODE_13212_length_243_cov_20.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13212_length_243_cov_20.975410_pilon to pilon.fasta [pilon] Writing NODE_13213_length_243_cov_20.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13213_length_243_cov_20.967213_pilon to pilon.fasta [pilon] Writing NODE_13214_length_243_cov_20.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13214_length_243_cov_20.959016_pilon to pilon.fasta [pilon] Writing NODE_13215_length_243_cov_20.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13215_length_243_cov_20.950820_pilon to pilon.fasta [pilon] Writing NODE_13216_length_243_cov_20.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13216_length_243_cov_20.934426_pilon to pilon.fasta [pilon] Writing NODE_13217_length_243_cov_20.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13217_length_243_cov_20.934426_pilon to pilon.fasta [pilon] Writing NODE_13218_length_243_cov_20.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13218_length_243_cov_20.918033_pilon to pilon.fasta [pilon] Writing NODE_13219_length_243_cov_20.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13219_length_243_cov_20.901639_pilon to pilon.fasta [pilon] Writing NODE_13220_length_243_cov_20.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13220_length_243_cov_20.893443_pilon to pilon.fasta [pilon] Writing NODE_13221_length_243_cov_20.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13221_length_243_cov_20.893443_pilon to pilon.fasta [pilon] Writing NODE_13222_length_243_cov_20.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13222_length_243_cov_20.893443_pilon to pilon.fasta [pilon] Writing NODE_13223_length_243_cov_20.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13223_length_243_cov_20.893443_pilon to pilon.fasta [pilon] Writing NODE_13224_length_243_cov_20.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13224_length_243_cov_20.893443_pilon to pilon.fasta [pilon] Writing NODE_13225_length_243_cov_20.885246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13225_length_243_cov_20.885246_pilon to pilon.fasta [pilon] Writing NODE_13226_length_243_cov_20.885246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13226_length_243_cov_20.885246_pilon to pilon.fasta [pilon] Writing NODE_13227_length_243_cov_20.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13227_length_243_cov_20.868852_pilon to pilon.fasta [pilon] Writing NODE_13228_length_243_cov_20.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13228_length_243_cov_20.868852_pilon to pilon.fasta [pilon] Writing NODE_13229_length_243_cov_20.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13229_length_243_cov_20.844262_pilon to pilon.fasta [pilon] Writing NODE_13230_length_243_cov_20.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13230_length_243_cov_20.827869_pilon to pilon.fasta [pilon] Writing NODE_13231_length_243_cov_20.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13231_length_243_cov_20.819672_pilon to pilon.fasta [pilon] Writing NODE_13232_length_243_cov_20.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13232_length_243_cov_20.811475_pilon to pilon.fasta [pilon] Writing NODE_13233_length_243_cov_20.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13233_length_243_cov_20.803279_pilon to pilon.fasta [pilon] Writing NODE_13234_length_243_cov_20.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13234_length_243_cov_20.803279_pilon to pilon.fasta [pilon] Writing NODE_13235_length_243_cov_20.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13235_length_243_cov_20.786885_pilon to pilon.fasta [pilon] Writing NODE_13236_length_243_cov_20.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13236_length_243_cov_20.762295_pilon to pilon.fasta [pilon] Writing NODE_13237_length_243_cov_20.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13237_length_243_cov_20.754098_pilon to pilon.fasta [pilon] Writing NODE_13238_length_243_cov_20.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13238_length_243_cov_20.745902_pilon to pilon.fasta [pilon] Writing NODE_13239_length_243_cov_20.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13239_length_243_cov_20.737705_pilon to pilon.fasta [pilon] Writing NODE_13240_length_243_cov_20.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13240_length_243_cov_20.729508_pilon to pilon.fasta [pilon] Writing NODE_13241_length_243_cov_20.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13241_length_243_cov_20.721311_pilon to pilon.fasta [pilon] Writing NODE_13242_length_243_cov_20.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13242_length_243_cov_20.704918_pilon to pilon.fasta [pilon] Writing NODE_13243_length_243_cov_20.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13243_length_243_cov_20.696721_pilon to pilon.fasta [pilon] Writing NODE_13244_length_243_cov_20.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13244_length_243_cov_20.688525_pilon to pilon.fasta [pilon] Writing NODE_13245_length_243_cov_20.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13245_length_243_cov_20.680328_pilon to pilon.fasta [pilon] Writing NODE_13246_length_243_cov_20.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13246_length_243_cov_20.680328_pilon to pilon.fasta [pilon] Writing NODE_13247_length_243_cov_20.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13247_length_243_cov_20.680328_pilon to pilon.fasta [pilon] Writing NODE_13248_length_243_cov_20.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13248_length_243_cov_20.672131_pilon to pilon.fasta [pilon] Writing NODE_13249_length_243_cov_20.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13249_length_243_cov_20.647541_pilon to pilon.fasta [pilon] Writing NODE_13250_length_243_cov_20.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13250_length_243_cov_20.639344_pilon to pilon.fasta [pilon] Writing NODE_13251_length_243_cov_20.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13251_length_243_cov_20.639344_pilon to pilon.fasta [pilon] Writing NODE_13252_length_243_cov_20.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13252_length_243_cov_20.631148_pilon to pilon.fasta [pilon] Writing NODE_13253_length_243_cov_20.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13253_length_243_cov_20.622951_pilon to pilon.fasta [pilon] Writing NODE_13254_length_243_cov_20.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13254_length_243_cov_20.581967_pilon to pilon.fasta [pilon] Writing NODE_13255_length_243_cov_20.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13255_length_243_cov_20.573770_pilon to pilon.fasta [pilon] Writing NODE_13256_length_243_cov_20.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13256_length_243_cov_20.565574_pilon to pilon.fasta [pilon] Writing NODE_13257_length_243_cov_20.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13257_length_243_cov_20.540984_pilon to pilon.fasta [pilon] Writing NODE_13258_length_243_cov_20.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13258_length_243_cov_20.532787_pilon to pilon.fasta [pilon] Writing NODE_13259_length_243_cov_20.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13259_length_243_cov_20.524590_pilon to pilon.fasta [pilon] Writing NODE_13260_length_243_cov_20.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13260_length_243_cov_20.524590_pilon to pilon.fasta [pilon] Writing NODE_13261_length_243_cov_20.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13261_length_243_cov_20.516393_pilon to pilon.fasta [pilon] Writing NODE_13262_length_243_cov_20.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13262_length_243_cov_20.491803_pilon to pilon.fasta [pilon] Writing NODE_13263_length_243_cov_20.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13263_length_243_cov_20.483607_pilon to pilon.fasta [pilon] Writing NODE_13264_length_243_cov_20.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13264_length_243_cov_20.467213_pilon to pilon.fasta [pilon] Writing NODE_13265_length_243_cov_20.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13265_length_243_cov_20.459016_pilon to pilon.fasta [pilon] Writing NODE_13266_length_243_cov_20.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13266_length_243_cov_20.459016_pilon to pilon.fasta [pilon] Writing NODE_13267_length_243_cov_20.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_13267_length_243_cov_20.442623_pilon to pilon.fasta [pilon] Writing NODE_13268_length_243_cov_20.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13268_length_243_cov_20.434426_pilon to pilon.fasta [pilon] Writing NODE_13269_length_243_cov_20.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13269_length_243_cov_20.418033_pilon to pilon.fasta [pilon] Writing NODE_13270_length_243_cov_20.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_13270_length_243_cov_20.409836_pilon to pilon.fasta [pilon] Writing NODE_13271_length_243_cov_20.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13271_length_243_cov_20.401639_pilon to pilon.fasta [pilon] Writing NODE_13272_length_243_cov_20.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13272_length_243_cov_20.401639_pilon to pilon.fasta [pilon] Writing NODE_13273_length_243_cov_20.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13273_length_243_cov_20.401639_pilon to pilon.fasta [pilon] Writing NODE_13274_length_243_cov_20.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13274_length_243_cov_20.393443_pilon to pilon.fasta [pilon] Writing NODE_13275_length_243_cov_20.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13275_length_243_cov_20.393443_pilon to pilon.fasta [pilon] Writing NODE_13276_length_243_cov_20.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13276_length_243_cov_20.385246_pilon to pilon.fasta [pilon] Writing NODE_13277_length_243_cov_20.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13277_length_243_cov_20.385246_pilon to pilon.fasta [pilon] Writing NODE_13278_length_243_cov_20.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13278_length_243_cov_20.377049_pilon to pilon.fasta [pilon] Writing NODE_13279_length_243_cov_20.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13279_length_243_cov_20.377049_pilon to pilon.fasta [pilon] Writing NODE_13280_length_243_cov_20.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13280_length_243_cov_20.360656_pilon to pilon.fasta [pilon] Writing NODE_13281_length_243_cov_20.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13281_length_243_cov_20.352459_pilon to pilon.fasta [pilon] Writing NODE_13282_length_243_cov_20.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13282_length_243_cov_20.352459_pilon to pilon.fasta [pilon] Writing NODE_13283_length_243_cov_20.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13283_length_243_cov_20.336066_pilon to pilon.fasta [pilon] Writing NODE_13284_length_243_cov_20.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13284_length_243_cov_20.327869_pilon to pilon.fasta [pilon] Writing NODE_13285_length_243_cov_20.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13285_length_243_cov_20.327869_pilon to pilon.fasta [pilon] Writing NODE_13286_length_243_cov_20.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13286_length_243_cov_20.311475_pilon to pilon.fasta [pilon] Writing NODE_13287_length_243_cov_20.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13287_length_243_cov_20.311475_pilon to pilon.fasta [pilon] Writing NODE_13288_length_243_cov_20.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13288_length_243_cov_20.303279_pilon to pilon.fasta [pilon] Writing NODE_13289_length_243_cov_20.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13289_length_243_cov_20.295082_pilon to pilon.fasta [pilon] Writing NODE_13290_length_243_cov_20.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13290_length_243_cov_20.295082_pilon to pilon.fasta [pilon] Writing NODE_13291_length_243_cov_20.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13291_length_243_cov_20.295082_pilon to pilon.fasta [pilon] Writing NODE_13292_length_243_cov_20.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13292_length_243_cov_20.286885_pilon to pilon.fasta [pilon] Writing NODE_13293_length_243_cov_20.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13293_length_243_cov_20.278689_pilon to pilon.fasta [pilon] Writing NODE_13294_length_243_cov_20.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13294_length_243_cov_20.278689_pilon to pilon.fasta [pilon] Writing NODE_13295_length_243_cov_20.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13295_length_243_cov_20.278689_pilon to pilon.fasta [pilon] Writing NODE_13296_length_243_cov_20.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13296_length_243_cov_20.270492_pilon to pilon.fasta [pilon] Writing NODE_13297_length_243_cov_20.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13297_length_243_cov_20.262295_pilon to pilon.fasta [pilon] Writing NODE_13298_length_243_cov_20.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13298_length_243_cov_20.245902_pilon to pilon.fasta [pilon] Writing NODE_13299_length_243_cov_20.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13299_length_243_cov_20.237705_pilon to pilon.fasta [pilon] Writing NODE_13300_length_243_cov_20.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13300_length_243_cov_20.237705_pilon to pilon.fasta [pilon] Writing NODE_13301_length_243_cov_20.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13301_length_243_cov_20.229508_pilon to pilon.fasta [pilon] Writing NODE_13302_length_243_cov_20.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13302_length_243_cov_20.221311_pilon to pilon.fasta [pilon] Writing NODE_13303_length_243_cov_20.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13303_length_243_cov_20.213115_pilon to pilon.fasta [pilon] Writing NODE_13304_length_243_cov_20.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13304_length_243_cov_20.213115_pilon to pilon.fasta [pilon] Writing NODE_13305_length_243_cov_20.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13305_length_243_cov_20.204918_pilon to pilon.fasta [pilon] Writing NODE_13306_length_243_cov_20.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13306_length_243_cov_20.204918_pilon to pilon.fasta [pilon] Writing NODE_13307_length_243_cov_20.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13307_length_243_cov_20.196721_pilon to pilon.fasta [pilon] Writing NODE_13308_length_243_cov_20.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13308_length_243_cov_20.188525_pilon to pilon.fasta [pilon] Writing NODE_13309_length_243_cov_20.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13309_length_243_cov_20.188525_pilon to pilon.fasta [pilon] Writing NODE_13310_length_243_cov_20.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13310_length_243_cov_20.172131_pilon to pilon.fasta [pilon] Writing NODE_13311_length_243_cov_20.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_13311_length_243_cov_20.163934_pilon to pilon.fasta [pilon] Writing NODE_13312_length_243_cov_20.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13312_length_243_cov_20.155738_pilon to pilon.fasta [pilon] Writing NODE_13313_length_243_cov_20.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13313_length_243_cov_20.139344_pilon to pilon.fasta [pilon] Writing NODE_13314_length_243_cov_20.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13314_length_243_cov_20.122951_pilon to pilon.fasta [pilon] Writing NODE_13315_length_243_cov_20.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13315_length_243_cov_20.114754_pilon to pilon.fasta [pilon] Writing NODE_13316_length_243_cov_20.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13316_length_243_cov_20.114754_pilon to pilon.fasta [pilon] Writing NODE_13317_length_243_cov_20.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13317_length_243_cov_20.098361_pilon to pilon.fasta [pilon] Writing NODE_13318_length_243_cov_20.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13318_length_243_cov_20.090164_pilon to pilon.fasta [pilon] Writing NODE_13319_length_243_cov_20.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13319_length_243_cov_20.090164_pilon to pilon.fasta [pilon] Writing NODE_13320_length_243_cov_20.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13320_length_243_cov_20.081967_pilon to pilon.fasta [pilon] Writing NODE_13321_length_243_cov_20.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13321_length_243_cov_20.073770_pilon to pilon.fasta [pilon] Writing NODE_13322_length_243_cov_20.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13322_length_243_cov_20.073770_pilon to pilon.fasta [pilon] Writing NODE_13323_length_243_cov_20.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13323_length_243_cov_20.065574_pilon to pilon.fasta [pilon] Writing NODE_13324_length_243_cov_20.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13324_length_243_cov_20.065574_pilon to pilon.fasta [pilon] Writing NODE_13325_length_243_cov_20.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_13325_length_243_cov_20.057377_pilon to pilon.fasta [pilon] Writing NODE_13326_length_243_cov_20.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13326_length_243_cov_20.040984_pilon to pilon.fasta [pilon] Writing NODE_13327_length_243_cov_20.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13327_length_243_cov_20.016393_pilon to pilon.fasta [pilon] Writing NODE_13328_length_243_cov_20.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13328_length_243_cov_20.008197_pilon to pilon.fasta [pilon] Writing NODE_13329_length_243_cov_20.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13329_length_243_cov_20.008197_pilon to pilon.fasta [pilon] Writing NODE_13330_length_243_cov_20.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_13330_length_243_cov_20.000000_pilon to pilon.fasta [pilon] Writing NODE_13331_length_243_cov_19.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13331_length_243_cov_19.967213_pilon to pilon.fasta [pilon] Writing NODE_13332_length_243_cov_19.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13332_length_243_cov_19.967213_pilon to pilon.fasta [pilon] Writing NODE_13333_length_243_cov_19.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13333_length_243_cov_19.967213_pilon to pilon.fasta [pilon] Writing NODE_13334_length_243_cov_19.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13334_length_243_cov_19.959016_pilon to pilon.fasta [pilon] Writing NODE_13335_length_243_cov_19.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13335_length_243_cov_19.934426_pilon to pilon.fasta [pilon] Writing NODE_13336_length_243_cov_19.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13336_length_243_cov_19.934426_pilon to pilon.fasta [pilon] Writing NODE_13337_length_243_cov_19.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13337_length_243_cov_19.926230_pilon to pilon.fasta [pilon] Writing NODE_13338_length_243_cov_19.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13338_length_243_cov_19.926230_pilon to pilon.fasta [pilon] Writing NODE_13339_length_243_cov_19.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13339_length_243_cov_19.926230_pilon to pilon.fasta [pilon] Writing NODE_13340_length_243_cov_19.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13340_length_243_cov_19.918033_pilon to pilon.fasta [pilon] Writing NODE_13341_length_243_cov_19.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13341_length_243_cov_19.918033_pilon to pilon.fasta [pilon] Writing NODE_13342_length_243_cov_19.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13342_length_243_cov_19.901639_pilon to pilon.fasta [pilon] Writing NODE_13343_length_243_cov_19.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13343_length_243_cov_19.893443_pilon to pilon.fasta [pilon] Writing NODE_13344_length_243_cov_19.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13344_length_243_cov_19.893443_pilon to pilon.fasta [pilon] Writing NODE_13345_length_243_cov_19.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13345_length_243_cov_19.868852_pilon to pilon.fasta [pilon] Writing NODE_13346_length_243_cov_19.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13346_length_243_cov_19.860656_pilon to pilon.fasta [pilon] Writing NODE_13347_length_243_cov_19.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13347_length_243_cov_19.860656_pilon to pilon.fasta [pilon] Writing NODE_13348_length_243_cov_19.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13348_length_243_cov_19.852459_pilon to pilon.fasta [pilon] Writing NODE_13349_length_243_cov_19.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13349_length_243_cov_19.852459_pilon to pilon.fasta [pilon] Writing NODE_13350_length_243_cov_19.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13350_length_243_cov_19.836066_pilon to pilon.fasta [pilon] Writing NODE_13351_length_243_cov_19.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13351_length_243_cov_19.836066_pilon to pilon.fasta [pilon] Writing NODE_13352_length_243_cov_19.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13352_length_243_cov_19.827869_pilon to pilon.fasta [pilon] Writing NODE_13353_length_243_cov_19.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13353_length_243_cov_19.827869_pilon to pilon.fasta [pilon] Writing NODE_13354_length_243_cov_19.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13354_length_243_cov_19.811475_pilon to pilon.fasta [pilon] Writing NODE_13355_length_243_cov_19.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13355_length_243_cov_19.811475_pilon to pilon.fasta [pilon] Writing NODE_13356_length_243_cov_19.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13356_length_243_cov_19.803279_pilon to pilon.fasta [pilon] Writing NODE_13357_length_243_cov_19.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13357_length_243_cov_19.778689_pilon to pilon.fasta [pilon] Writing NODE_13358_length_243_cov_19.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13358_length_243_cov_19.770492_pilon to pilon.fasta [pilon] Writing NODE_13359_length_243_cov_19.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13359_length_243_cov_19.754098_pilon to pilon.fasta [pilon] Writing NODE_13360_length_243_cov_19.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13360_length_243_cov_19.754098_pilon to pilon.fasta [pilon] Writing NODE_13361_length_243_cov_19.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13361_length_243_cov_19.729508_pilon to pilon.fasta [pilon] Writing NODE_13362_length_243_cov_19.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13362_length_243_cov_19.729508_pilon to pilon.fasta [pilon] Writing NODE_13363_length_243_cov_19.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13363_length_243_cov_19.713115_pilon to pilon.fasta [pilon] Writing NODE_13364_length_243_cov_19.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13364_length_243_cov_19.704918_pilon to pilon.fasta [pilon] Writing NODE_13365_length_243_cov_19.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13365_length_243_cov_19.696721_pilon to pilon.fasta [pilon] Writing NODE_13366_length_243_cov_19.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13366_length_243_cov_19.680328_pilon to pilon.fasta [pilon] Writing NODE_13367_length_243_cov_19.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13367_length_243_cov_19.672131_pilon to pilon.fasta [pilon] Writing NODE_13368_length_243_cov_19.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13368_length_243_cov_19.672131_pilon to pilon.fasta [pilon] Writing NODE_13369_length_243_cov_19.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13369_length_243_cov_19.655738_pilon to pilon.fasta [pilon] Writing NODE_13370_length_243_cov_19.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13370_length_243_cov_19.631148_pilon to pilon.fasta [pilon] Writing NODE_13371_length_243_cov_19.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13371_length_243_cov_19.631148_pilon to pilon.fasta [pilon] Writing NODE_13372_length_243_cov_19.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13372_length_243_cov_19.622951_pilon to pilon.fasta [pilon] Writing NODE_13373_length_243_cov_19.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13373_length_243_cov_19.614754_pilon to pilon.fasta [pilon] Writing NODE_13374_length_243_cov_19.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13374_length_243_cov_19.598361_pilon to pilon.fasta [pilon] Writing NODE_13375_length_243_cov_19.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13375_length_243_cov_19.590164_pilon to pilon.fasta [pilon] Writing NODE_13376_length_243_cov_19.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13376_length_243_cov_19.581967_pilon to pilon.fasta [pilon] Writing NODE_13377_length_243_cov_19.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13377_length_243_cov_19.581967_pilon to pilon.fasta [pilon] Writing NODE_13378_length_243_cov_19.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13378_length_243_cov_19.573770_pilon to pilon.fasta [pilon] Writing NODE_13379_length_243_cov_19.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13379_length_243_cov_19.540984_pilon to pilon.fasta [pilon] Writing NODE_13380_length_243_cov_19.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13380_length_243_cov_19.540984_pilon to pilon.fasta [pilon] Writing NODE_13381_length_243_cov_19.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13381_length_243_cov_19.532787_pilon to pilon.fasta [pilon] Writing NODE_13382_length_243_cov_19.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13382_length_243_cov_19.532787_pilon to pilon.fasta [pilon] Writing NODE_13383_length_243_cov_19.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13383_length_243_cov_19.516393_pilon to pilon.fasta [pilon] Writing NODE_13384_length_243_cov_19.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13384_length_243_cov_19.508197_pilon to pilon.fasta [pilon] Writing NODE_13385_length_243_cov_19.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_13385_length_243_cov_19.500000_pilon to pilon.fasta [pilon] Writing NODE_13386_length_243_cov_19.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13386_length_243_cov_19.483607_pilon to pilon.fasta [pilon] Writing NODE_13387_length_243_cov_19.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13387_length_243_cov_19.483607_pilon to pilon.fasta [pilon] Writing NODE_13388_length_243_cov_19.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13388_length_243_cov_19.467213_pilon to pilon.fasta [pilon] Writing NODE_13389_length_243_cov_19.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13389_length_243_cov_19.450820_pilon to pilon.fasta [pilon] Writing NODE_13390_length_243_cov_19.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13390_length_243_cov_19.418033_pilon to pilon.fasta [pilon] Writing NODE_13391_length_243_cov_19.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13391_length_243_cov_19.385246_pilon to pilon.fasta [pilon] Writing NODE_13392_length_243_cov_19.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13392_length_243_cov_19.377049_pilon to pilon.fasta [pilon] Writing NODE_13393_length_243_cov_19.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13393_length_243_cov_19.352459_pilon to pilon.fasta [pilon] Writing NODE_13394_length_243_cov_19.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13394_length_243_cov_19.344262_pilon to pilon.fasta [pilon] Writing NODE_13395_length_243_cov_19.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13395_length_243_cov_19.344262_pilon to pilon.fasta [pilon] Writing NODE_13396_length_243_cov_19.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13396_length_243_cov_19.336066_pilon to pilon.fasta [pilon] Writing NODE_13397_length_243_cov_19.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13397_length_243_cov_19.336066_pilon to pilon.fasta [pilon] Writing NODE_13398_length_243_cov_19.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13398_length_243_cov_19.327869_pilon to pilon.fasta [pilon] Writing NODE_13399_length_243_cov_19.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13399_length_243_cov_19.311475_pilon to pilon.fasta [pilon] Writing NODE_13400_length_243_cov_19.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13400_length_243_cov_19.303279_pilon to pilon.fasta [pilon] Writing NODE_13401_length_243_cov_19.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13401_length_243_cov_19.303279_pilon to pilon.fasta [pilon] Writing NODE_13402_length_243_cov_19.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13402_length_243_cov_19.295082_pilon to pilon.fasta [pilon] Writing NODE_13403_length_243_cov_19.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13403_length_243_cov_19.286885_pilon to pilon.fasta [pilon] Writing NODE_13404_length_243_cov_19.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13404_length_243_cov_19.286885_pilon to pilon.fasta [pilon] Writing NODE_13405_length_243_cov_19.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13405_length_243_cov_19.278689_pilon to pilon.fasta [pilon] Writing NODE_13406_length_243_cov_19.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13406_length_243_cov_19.270492_pilon to pilon.fasta [pilon] Writing NODE_13407_length_243_cov_19.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13407_length_243_cov_19.245902_pilon to pilon.fasta [pilon] Writing NODE_13408_length_243_cov_19.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13408_length_243_cov_19.245902_pilon to pilon.fasta [pilon] Writing NODE_13409_length_243_cov_19.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13409_length_243_cov_19.188525_pilon to pilon.fasta [pilon] Writing NODE_13410_length_243_cov_19.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13410_length_243_cov_19.180328_pilon to pilon.fasta [pilon] Writing NODE_13411_length_243_cov_19.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13411_length_243_cov_19.180328_pilon to pilon.fasta [pilon] Writing NODE_13412_length_243_cov_19.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13412_length_243_cov_19.172131_pilon to pilon.fasta [pilon] Writing NODE_13413_length_243_cov_19.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13413_length_243_cov_19.155738_pilon to pilon.fasta [pilon] Writing NODE_13414_length_243_cov_19.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13414_length_243_cov_19.155738_pilon to pilon.fasta [pilon] Writing NODE_13415_length_243_cov_19.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13415_length_243_cov_19.147541_pilon to pilon.fasta [pilon] Writing NODE_13416_length_243_cov_19.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13416_length_243_cov_19.139344_pilon to pilon.fasta [pilon] Writing NODE_13417_length_243_cov_19.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13417_length_243_cov_19.131148_pilon to pilon.fasta [pilon] Writing NODE_13418_length_243_cov_19.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13418_length_243_cov_19.122951_pilon to pilon.fasta [pilon] Writing NODE_13419_length_243_cov_19.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13419_length_243_cov_19.122951_pilon to pilon.fasta [pilon] Writing NODE_13420_length_243_cov_19.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13420_length_243_cov_19.098361_pilon to pilon.fasta [pilon] Writing NODE_13421_length_243_cov_19.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13421_length_243_cov_19.090164_pilon to pilon.fasta [pilon] Writing NODE_13422_length_243_cov_19.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13422_length_243_cov_19.090164_pilon to pilon.fasta [pilon] Writing NODE_13423_length_243_cov_19.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13423_length_243_cov_19.081967_pilon to pilon.fasta [pilon] Writing NODE_13424_length_243_cov_19.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13424_length_243_cov_19.081967_pilon to pilon.fasta [pilon] Writing NODE_13425_length_243_cov_19.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13425_length_243_cov_19.065574_pilon to pilon.fasta [pilon] Writing NODE_13426_length_243_cov_19.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13426_length_243_cov_19.049180_pilon to pilon.fasta [pilon] Writing NODE_13427_length_243_cov_19.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13427_length_243_cov_19.040984_pilon to pilon.fasta [pilon] Writing NODE_13428_length_243_cov_19.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13428_length_243_cov_19.024590_pilon to pilon.fasta [pilon] Writing NODE_13429_length_243_cov_19.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13429_length_243_cov_19.024590_pilon to pilon.fasta [pilon] Writing NODE_13430_length_243_cov_19.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13430_length_243_cov_19.024590_pilon to pilon.fasta [pilon] Writing NODE_13431_length_243_cov_19.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13431_length_243_cov_19.016393_pilon to pilon.fasta [pilon] Writing NODE_13432_length_243_cov_18.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13432_length_243_cov_18.983607_pilon to pilon.fasta [pilon] Writing NODE_13433_length_243_cov_18.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13433_length_243_cov_18.975410_pilon to pilon.fasta [pilon] Writing NODE_13434_length_243_cov_18.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13434_length_243_cov_18.967213_pilon to pilon.fasta [pilon] Writing NODE_13435_length_243_cov_18.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13435_length_243_cov_18.959016_pilon to pilon.fasta [pilon] Writing NODE_13436_length_243_cov_18.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13436_length_243_cov_18.959016_pilon to pilon.fasta [pilon] Writing NODE_13437_length_243_cov_18.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13437_length_243_cov_18.959016_pilon to pilon.fasta [pilon] Writing NODE_13438_length_243_cov_18.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13438_length_243_cov_18.950820_pilon to pilon.fasta [pilon] Writing NODE_13439_length_243_cov_18.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_13439_length_243_cov_18.942623_pilon to pilon.fasta [pilon] Writing NODE_13440_length_243_cov_18.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13440_length_243_cov_18.934426_pilon to pilon.fasta [pilon] Writing NODE_13441_length_243_cov_18.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13441_length_243_cov_18.934426_pilon to pilon.fasta [pilon] Writing NODE_13442_length_243_cov_18.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13442_length_243_cov_18.918033_pilon to pilon.fasta [pilon] Writing NODE_13443_length_243_cov_18.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13443_length_243_cov_18.918033_pilon to pilon.fasta [pilon] Writing NODE_13444_length_243_cov_18.885246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13444_length_243_cov_18.885246_pilon to pilon.fasta [pilon] Writing NODE_13445_length_243_cov_18.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13445_length_243_cov_18.877049_pilon to pilon.fasta [pilon] Writing NODE_13446_length_243_cov_18.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13446_length_243_cov_18.860656_pilon to pilon.fasta [pilon] Writing NODE_13447_length_243_cov_18.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13447_length_243_cov_18.860656_pilon to pilon.fasta [pilon] Writing NODE_13448_length_243_cov_18.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13448_length_243_cov_18.852459_pilon to pilon.fasta [pilon] Writing NODE_13449_length_243_cov_18.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13449_length_243_cov_18.836066_pilon to pilon.fasta [pilon] Writing NODE_13450_length_243_cov_18.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13450_length_243_cov_18.827869_pilon to pilon.fasta [pilon] Writing NODE_13451_length_243_cov_18.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13451_length_243_cov_18.827869_pilon to pilon.fasta [pilon] Writing NODE_13452_length_243_cov_18.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13452_length_243_cov_18.819672_pilon to pilon.fasta [pilon] Writing NODE_13453_length_243_cov_18.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13453_length_243_cov_18.811475_pilon to pilon.fasta [pilon] Writing NODE_13454_length_243_cov_18.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13454_length_243_cov_18.795082_pilon to pilon.fasta [pilon] Writing NODE_13455_length_243_cov_18.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13455_length_243_cov_18.786885_pilon to pilon.fasta [pilon] Writing NODE_13456_length_243_cov_18.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13456_length_243_cov_18.786885_pilon to pilon.fasta [pilon] Writing NODE_13457_length_243_cov_18.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13457_length_243_cov_18.786885_pilon to pilon.fasta [pilon] Writing NODE_13458_length_243_cov_18.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13458_length_243_cov_18.778689_pilon to pilon.fasta [pilon] Writing NODE_13459_length_243_cov_18.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13459_length_243_cov_18.778689_pilon to pilon.fasta [pilon] Writing NODE_13460_length_243_cov_18.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13460_length_243_cov_18.762295_pilon to pilon.fasta [pilon] Writing NODE_13461_length_243_cov_18.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13461_length_243_cov_18.762295_pilon to pilon.fasta [pilon] Writing NODE_13462_length_243_cov_18.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13462_length_243_cov_18.745902_pilon to pilon.fasta [pilon] Writing NODE_13463_length_243_cov_18.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13463_length_243_cov_18.745902_pilon to pilon.fasta [pilon] Writing NODE_13464_length_243_cov_18.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13464_length_243_cov_18.745902_pilon to pilon.fasta [pilon] Writing NODE_13465_length_243_cov_18.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13465_length_243_cov_18.745902_pilon to pilon.fasta [pilon] Writing NODE_13466_length_243_cov_18.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13466_length_243_cov_18.713115_pilon to pilon.fasta [pilon] Writing NODE_13467_length_243_cov_18.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13467_length_243_cov_18.713115_pilon to pilon.fasta [pilon] Writing NODE_13468_length_243_cov_18.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13468_length_243_cov_18.704918_pilon to pilon.fasta [pilon] Writing NODE_13469_length_243_cov_18.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13469_length_243_cov_18.696721_pilon to pilon.fasta [pilon] Writing NODE_13470_length_243_cov_18.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13470_length_243_cov_18.696721_pilon to pilon.fasta [pilon] Writing NODE_13471_length_243_cov_18.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13471_length_243_cov_18.672131_pilon to pilon.fasta [pilon] Writing NODE_13472_length_243_cov_18.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13472_length_243_cov_18.672131_pilon to pilon.fasta [pilon] Writing NODE_13473_length_243_cov_18.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13473_length_243_cov_18.655738_pilon to pilon.fasta [pilon] Writing NODE_13474_length_243_cov_18.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13474_length_243_cov_18.647541_pilon to pilon.fasta [pilon] Writing NODE_13475_length_243_cov_18.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13475_length_243_cov_18.639344_pilon to pilon.fasta [pilon] Writing NODE_13476_length_243_cov_18.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13476_length_243_cov_18.631148_pilon to pilon.fasta [pilon] Writing NODE_13477_length_243_cov_18.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13477_length_243_cov_18.614754_pilon to pilon.fasta [pilon] Writing NODE_13478_length_243_cov_18.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13478_length_243_cov_18.606557_pilon to pilon.fasta [pilon] Writing NODE_13479_length_243_cov_18.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13479_length_243_cov_18.606557_pilon to pilon.fasta [pilon] Writing NODE_13480_length_243_cov_18.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13480_length_243_cov_18.606557_pilon to pilon.fasta [pilon] Writing NODE_13481_length_243_cov_18.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13481_length_243_cov_18.565574_pilon to pilon.fasta [pilon] Writing NODE_13482_length_243_cov_18.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13482_length_243_cov_18.549180_pilon to pilon.fasta [pilon] Writing NODE_13483_length_243_cov_18.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13483_length_243_cov_18.532787_pilon to pilon.fasta [pilon] Writing NODE_13484_length_243_cov_18.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13484_length_243_cov_18.532787_pilon to pilon.fasta [pilon] Writing NODE_13485_length_243_cov_18.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13485_length_243_cov_18.508197_pilon to pilon.fasta [pilon] Writing NODE_13486_length_243_cov_18.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13486_length_243_cov_18.508197_pilon to pilon.fasta [pilon] Writing NODE_13487_length_243_cov_18.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_13487_length_243_cov_18.500000_pilon to pilon.fasta [pilon] Writing NODE_13488_length_243_cov_18.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13488_length_243_cov_18.467213_pilon to pilon.fasta [pilon] Writing NODE_13489_length_243_cov_18.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13489_length_243_cov_18.426230_pilon to pilon.fasta [pilon] Writing NODE_13490_length_243_cov_18.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13490_length_243_cov_18.426230_pilon to pilon.fasta [pilon] Writing NODE_13491_length_243_cov_18.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13491_length_243_cov_18.426230_pilon to pilon.fasta [pilon] Writing NODE_13492_length_243_cov_18.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13492_length_243_cov_18.418033_pilon to pilon.fasta [pilon] Writing NODE_13493_length_243_cov_18.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_13493_length_243_cov_18.409836_pilon to pilon.fasta [pilon] Writing NODE_13494_length_243_cov_18.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_13494_length_243_cov_18.409836_pilon to pilon.fasta [pilon] Writing NODE_13495_length_243_cov_18.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13495_length_243_cov_18.393443_pilon to pilon.fasta [pilon] Writing NODE_13496_length_243_cov_18.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13496_length_243_cov_18.377049_pilon to pilon.fasta [pilon] Writing NODE_13497_length_243_cov_18.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13497_length_243_cov_18.377049_pilon to pilon.fasta [pilon] Writing NODE_13498_length_243_cov_18.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13498_length_243_cov_18.368852_pilon to pilon.fasta [pilon] Writing NODE_13499_length_243_cov_18.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13499_length_243_cov_18.360656_pilon to pilon.fasta [pilon] Writing NODE_13500_length_243_cov_18.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13500_length_243_cov_18.352459_pilon to pilon.fasta [pilon] Writing NODE_13501_length_243_cov_18.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13501_length_243_cov_18.352459_pilon to pilon.fasta [pilon] Writing NODE_13502_length_243_cov_18.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13502_length_243_cov_18.352459_pilon to pilon.fasta [pilon] Writing NODE_13503_length_243_cov_18.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13503_length_243_cov_18.352459_pilon to pilon.fasta [pilon] Writing NODE_13504_length_243_cov_18.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13504_length_243_cov_18.336066_pilon to pilon.fasta [pilon] Writing NODE_13505_length_243_cov_18.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13505_length_243_cov_18.336066_pilon to pilon.fasta [pilon] Writing NODE_13506_length_243_cov_18.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13506_length_243_cov_18.327869_pilon to pilon.fasta [pilon] Writing NODE_13507_length_243_cov_18.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13507_length_243_cov_18.319672_pilon to pilon.fasta [pilon] Writing NODE_13508_length_243_cov_18.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13508_length_243_cov_18.311475_pilon to pilon.fasta [pilon] Writing NODE_13509_length_243_cov_18.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13509_length_243_cov_18.311475_pilon to pilon.fasta [pilon] Writing NODE_13510_length_243_cov_18.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13510_length_243_cov_18.303279_pilon to pilon.fasta [pilon] Writing NODE_13511_length_243_cov_18.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13511_length_243_cov_18.303279_pilon to pilon.fasta [pilon] Writing NODE_13512_length_243_cov_18.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13512_length_243_cov_18.278689_pilon to pilon.fasta [pilon] Writing NODE_13513_length_243_cov_18.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13513_length_243_cov_18.278689_pilon to pilon.fasta [pilon] Writing NODE_13514_length_243_cov_18.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13514_length_243_cov_18.270492_pilon to pilon.fasta [pilon] Writing NODE_13515_length_243_cov_18.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13515_length_243_cov_18.262295_pilon to pilon.fasta [pilon] Writing NODE_13516_length_243_cov_18.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13516_length_243_cov_18.229508_pilon to pilon.fasta [pilon] Writing NODE_13517_length_243_cov_18.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13517_length_243_cov_18.229508_pilon to pilon.fasta [pilon] Writing NODE_13518_length_243_cov_18.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13518_length_243_cov_18.204918_pilon to pilon.fasta [pilon] Writing NODE_13519_length_243_cov_18.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13519_length_243_cov_18.172131_pilon to pilon.fasta [pilon] Writing NODE_13520_length_243_cov_18.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13520_length_243_cov_18.155738_pilon to pilon.fasta [pilon] Writing NODE_13521_length_243_cov_18.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13521_length_243_cov_18.155738_pilon to pilon.fasta [pilon] Writing NODE_13522_length_243_cov_18.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13522_length_243_cov_18.147541_pilon to pilon.fasta [pilon] Writing NODE_13523_length_243_cov_18.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13523_length_243_cov_18.147541_pilon to pilon.fasta [pilon] Writing NODE_13524_length_243_cov_18.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13524_length_243_cov_18.139344_pilon to pilon.fasta [pilon] Writing NODE_13525_length_243_cov_18.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13525_length_243_cov_18.131148_pilon to pilon.fasta [pilon] Writing NODE_13526_length_243_cov_18.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13526_length_243_cov_18.106557_pilon to pilon.fasta [pilon] Writing NODE_13527_length_243_cov_18.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13527_length_243_cov_18.090164_pilon to pilon.fasta [pilon] Writing NODE_13528_length_243_cov_18.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13528_length_243_cov_18.073770_pilon to pilon.fasta [pilon] Writing NODE_13529_length_243_cov_18.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13529_length_243_cov_18.073770_pilon to pilon.fasta [pilon] Writing NODE_13530_length_243_cov_18.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13530_length_243_cov_18.073770_pilon to pilon.fasta [pilon] Writing NODE_13531_length_243_cov_18.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13531_length_243_cov_18.065574_pilon to pilon.fasta [pilon] Writing NODE_13532_length_243_cov_18.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_13532_length_243_cov_18.057377_pilon to pilon.fasta [pilon] Writing NODE_13533_length_243_cov_18.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13533_length_243_cov_18.040984_pilon to pilon.fasta [pilon] Writing NODE_13534_length_243_cov_18.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13534_length_243_cov_18.040984_pilon to pilon.fasta [pilon] Writing NODE_13535_length_243_cov_18.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13535_length_243_cov_18.016393_pilon to pilon.fasta [pilon] Writing NODE_13536_length_243_cov_18.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13536_length_243_cov_18.016393_pilon to pilon.fasta [pilon] Writing NODE_13537_length_243_cov_18.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13537_length_243_cov_18.016393_pilon to pilon.fasta [pilon] Writing NODE_13538_length_243_cov_18.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13538_length_243_cov_18.008197_pilon to pilon.fasta [pilon] Writing NODE_13539_length_243_cov_18.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13539_length_243_cov_18.008197_pilon to pilon.fasta [pilon] Writing NODE_13540_length_243_cov_18.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13540_length_243_cov_18.008197_pilon to pilon.fasta [pilon] Writing NODE_13541_length_243_cov_17.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13541_length_243_cov_17.975410_pilon to pilon.fasta [pilon] Writing NODE_13542_length_243_cov_17.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13542_length_243_cov_17.975410_pilon to pilon.fasta [pilon] Writing NODE_13543_length_243_cov_17.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13543_length_243_cov_17.967213_pilon to pilon.fasta [pilon] Writing NODE_13544_length_243_cov_17.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13544_length_243_cov_17.967213_pilon to pilon.fasta [pilon] Writing NODE_13545_length_243_cov_17.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13545_length_243_cov_17.959016_pilon to pilon.fasta [pilon] Writing NODE_13546_length_243_cov_17.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13546_length_243_cov_17.959016_pilon to pilon.fasta [pilon] Writing NODE_13547_length_243_cov_17.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13547_length_243_cov_17.959016_pilon to pilon.fasta [pilon] Writing NODE_13548_length_243_cov_17.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13548_length_243_cov_17.934426_pilon to pilon.fasta [pilon] Writing NODE_13549_length_243_cov_17.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13549_length_243_cov_17.926230_pilon to pilon.fasta [pilon] Writing NODE_13550_length_243_cov_17.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13550_length_243_cov_17.918033_pilon to pilon.fasta [pilon] Writing NODE_13551_length_243_cov_17.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13551_length_243_cov_17.918033_pilon to pilon.fasta [pilon] Writing NODE_13552_length_243_cov_17.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13552_length_243_cov_17.918033_pilon to pilon.fasta [pilon] Writing NODE_13553_length_243_cov_17.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13553_length_243_cov_17.918033_pilon to pilon.fasta [pilon] Writing NODE_13554_length_243_cov_17.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_13554_length_243_cov_17.909836_pilon to pilon.fasta [pilon] Writing NODE_13555_length_243_cov_17.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13555_length_243_cov_17.893443_pilon to pilon.fasta [pilon] Writing NODE_13556_length_243_cov_17.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13556_length_243_cov_17.852459_pilon to pilon.fasta [pilon] Writing NODE_13557_length_243_cov_17.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13557_length_243_cov_17.836066_pilon to pilon.fasta [pilon] Writing NODE_13558_length_243_cov_17.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13558_length_243_cov_17.819672_pilon to pilon.fasta [pilon] Writing NODE_13559_length_243_cov_17.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13559_length_243_cov_17.803279_pilon to pilon.fasta [pilon] Writing NODE_13560_length_243_cov_17.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13560_length_243_cov_17.786885_pilon to pilon.fasta [pilon] Writing NODE_13561_length_243_cov_17.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13561_length_243_cov_17.786885_pilon to pilon.fasta [pilon] Writing NODE_13562_length_243_cov_17.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13562_length_243_cov_17.786885_pilon to pilon.fasta [pilon] Writing NODE_13563_length_243_cov_17.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13563_length_243_cov_17.778689_pilon to pilon.fasta [pilon] Writing NODE_13564_length_243_cov_17.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13564_length_243_cov_17.778689_pilon to pilon.fasta [pilon] Writing NODE_13565_length_243_cov_17.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13565_length_243_cov_17.770492_pilon to pilon.fasta [pilon] Writing NODE_13566_length_243_cov_17.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13566_length_243_cov_17.762295_pilon to pilon.fasta [pilon] Writing NODE_13567_length_243_cov_17.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13567_length_243_cov_17.754098_pilon to pilon.fasta [pilon] Writing NODE_13568_length_243_cov_17.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13568_length_243_cov_17.754098_pilon to pilon.fasta [pilon] Writing NODE_13569_length_243_cov_17.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13569_length_243_cov_17.754098_pilon to pilon.fasta [pilon] Writing NODE_13570_length_243_cov_17.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13570_length_243_cov_17.754098_pilon to pilon.fasta [pilon] Writing NODE_13571_length_243_cov_17.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13571_length_243_cov_17.745902_pilon to pilon.fasta [pilon] Writing NODE_13572_length_243_cov_17.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13572_length_243_cov_17.729508_pilon to pilon.fasta [pilon] Writing NODE_13573_length_243_cov_17.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13573_length_243_cov_17.729508_pilon to pilon.fasta [pilon] Writing NODE_13574_length_243_cov_17.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13574_length_243_cov_17.721311_pilon to pilon.fasta [pilon] Writing NODE_13575_length_243_cov_17.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13575_length_243_cov_17.721311_pilon to pilon.fasta [pilon] Writing NODE_13576_length_243_cov_17.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13576_length_243_cov_17.704918_pilon to pilon.fasta [pilon] Writing NODE_13577_length_243_cov_17.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13577_length_243_cov_17.704918_pilon to pilon.fasta [pilon] Writing NODE_13578_length_243_cov_17.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13578_length_243_cov_17.696721_pilon to pilon.fasta [pilon] Writing NODE_13579_length_243_cov_17.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13579_length_243_cov_17.696721_pilon to pilon.fasta [pilon] Writing NODE_13580_length_243_cov_17.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13580_length_243_cov_17.680328_pilon to pilon.fasta [pilon] Writing NODE_13581_length_243_cov_17.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13581_length_243_cov_17.672131_pilon to pilon.fasta [pilon] Writing NODE_13582_length_243_cov_17.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13582_length_243_cov_17.639344_pilon to pilon.fasta [pilon] Writing NODE_13583_length_243_cov_17.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13583_length_243_cov_17.631148_pilon to pilon.fasta [pilon] Writing NODE_13584_length_243_cov_17.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13584_length_243_cov_17.598361_pilon to pilon.fasta [pilon] Writing NODE_13585_length_243_cov_17.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13585_length_243_cov_17.598361_pilon to pilon.fasta [pilon] Writing NODE_13586_length_243_cov_17.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13586_length_243_cov_17.590164_pilon to pilon.fasta [pilon] Writing NODE_13587_length_243_cov_17.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13587_length_243_cov_17.590164_pilon to pilon.fasta [pilon] Writing NODE_13588_length_243_cov_17.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13588_length_243_cov_17.590164_pilon to pilon.fasta [pilon] Writing NODE_13589_length_243_cov_17.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13589_length_243_cov_17.590164_pilon to pilon.fasta [pilon] Writing NODE_13590_length_243_cov_17.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13590_length_243_cov_17.581967_pilon to pilon.fasta [pilon] Writing NODE_13591_length_243_cov_17.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13591_length_243_cov_17.573770_pilon to pilon.fasta [pilon] Writing NODE_13592_length_243_cov_17.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13592_length_243_cov_17.573770_pilon to pilon.fasta [pilon] Writing NODE_13593_length_243_cov_17.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13593_length_243_cov_17.565574_pilon to pilon.fasta [pilon] Writing NODE_13594_length_243_cov_17.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13594_length_243_cov_17.565574_pilon to pilon.fasta [pilon] Writing NODE_13595_length_243_cov_17.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13595_length_243_cov_17.549180_pilon to pilon.fasta [pilon] Writing NODE_13596_length_243_cov_17.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13596_length_243_cov_17.532787_pilon to pilon.fasta [pilon] Writing NODE_13597_length_243_cov_17.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13597_length_243_cov_17.524590_pilon to pilon.fasta [pilon] Writing NODE_13598_length_243_cov_17.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13598_length_243_cov_17.516393_pilon to pilon.fasta [pilon] Writing NODE_13599_length_243_cov_17.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13599_length_243_cov_17.508197_pilon to pilon.fasta [pilon] Writing NODE_13600_length_243_cov_17.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_13600_length_243_cov_17.500000_pilon to pilon.fasta [pilon] Writing NODE_13601_length_243_cov_17.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13601_length_243_cov_17.491803_pilon to pilon.fasta [pilon] Writing NODE_13602_length_243_cov_17.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13602_length_243_cov_17.483607_pilon to pilon.fasta [pilon] Writing NODE_13603_length_243_cov_17.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13603_length_243_cov_17.467213_pilon to pilon.fasta [pilon] Writing NODE_13604_length_243_cov_17.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13604_length_243_cov_17.467213_pilon to pilon.fasta [pilon] Writing NODE_13605_length_243_cov_17.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13605_length_243_cov_17.459016_pilon to pilon.fasta [pilon] Writing NODE_13606_length_243_cov_17.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13606_length_243_cov_17.450820_pilon to pilon.fasta [pilon] Writing NODE_13607_length_243_cov_17.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_13607_length_243_cov_17.442623_pilon to pilon.fasta [pilon] Writing NODE_13608_length_243_cov_17.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_13608_length_243_cov_17.409836_pilon to pilon.fasta [pilon] Writing NODE_13609_length_243_cov_17.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13609_length_243_cov_17.393443_pilon to pilon.fasta [pilon] Writing NODE_13610_length_243_cov_17.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13610_length_243_cov_17.385246_pilon to pilon.fasta [pilon] Writing NODE_13611_length_243_cov_17.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13611_length_243_cov_17.377049_pilon to pilon.fasta [pilon] Writing NODE_13612_length_243_cov_17.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13612_length_243_cov_17.377049_pilon to pilon.fasta [pilon] Writing NODE_13613_length_243_cov_17.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13613_length_243_cov_17.377049_pilon to pilon.fasta [pilon] Writing NODE_13614_length_243_cov_17.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13614_length_243_cov_17.352459_pilon to pilon.fasta [pilon] Writing NODE_13615_length_243_cov_17.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13615_length_243_cov_17.352459_pilon to pilon.fasta [pilon] Writing NODE_13616_length_243_cov_17.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13616_length_243_cov_17.344262_pilon to pilon.fasta [pilon] Writing NODE_13617_length_243_cov_17.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13617_length_243_cov_17.327869_pilon to pilon.fasta [pilon] Writing NODE_13618_length_243_cov_17.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13618_length_243_cov_17.327869_pilon to pilon.fasta [pilon] Writing NODE_13619_length_243_cov_17.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13619_length_243_cov_17.311475_pilon to pilon.fasta [pilon] Writing NODE_13620_length_243_cov_17.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13620_length_243_cov_17.311475_pilon to pilon.fasta [pilon] Writing NODE_13621_length_243_cov_17.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13621_length_243_cov_17.295082_pilon to pilon.fasta [pilon] Writing NODE_13622_length_243_cov_17.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13622_length_243_cov_17.295082_pilon to pilon.fasta [pilon] Writing NODE_13623_length_243_cov_17.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13623_length_243_cov_17.286885_pilon to pilon.fasta [pilon] Writing NODE_13624_length_243_cov_17.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13624_length_243_cov_17.254098_pilon to pilon.fasta [pilon] Writing NODE_13625_length_243_cov_17.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13625_length_243_cov_17.237705_pilon to pilon.fasta [pilon] Writing NODE_13626_length_243_cov_17.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13626_length_243_cov_17.229508_pilon to pilon.fasta [pilon] Writing NODE_13627_length_243_cov_17.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13627_length_243_cov_17.221311_pilon to pilon.fasta [pilon] Writing NODE_13628_length_243_cov_17.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13628_length_243_cov_17.213115_pilon to pilon.fasta [pilon] Writing NODE_13629_length_243_cov_17.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13629_length_243_cov_17.213115_pilon to pilon.fasta [pilon] Writing NODE_13630_length_243_cov_17.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13630_length_243_cov_17.204918_pilon to pilon.fasta [pilon] Writing NODE_13631_length_243_cov_17.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13631_length_243_cov_17.196721_pilon to pilon.fasta [pilon] Writing NODE_13632_length_243_cov_17.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13632_length_243_cov_17.196721_pilon to pilon.fasta [pilon] Writing NODE_13633_length_243_cov_17.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13633_length_243_cov_17.196721_pilon to pilon.fasta [pilon] Writing NODE_13634_length_243_cov_17.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13634_length_243_cov_17.172131_pilon to pilon.fasta [pilon] Writing NODE_13635_length_243_cov_17.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13635_length_243_cov_17.172131_pilon to pilon.fasta [pilon] Writing NODE_13636_length_243_cov_17.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_13636_length_243_cov_17.163934_pilon to pilon.fasta [pilon] Writing NODE_13637_length_243_cov_17.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13637_length_243_cov_17.155738_pilon to pilon.fasta [pilon] Writing NODE_13638_length_243_cov_17.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13638_length_243_cov_17.147541_pilon to pilon.fasta [pilon] Writing NODE_13639_length_243_cov_17.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13639_length_243_cov_17.139344_pilon to pilon.fasta [pilon] Writing NODE_13640_length_243_cov_17.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13640_length_243_cov_17.122951_pilon to pilon.fasta [pilon] Writing NODE_13641_length_243_cov_17.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13641_length_243_cov_17.106557_pilon to pilon.fasta [pilon] Writing NODE_13642_length_243_cov_17.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13642_length_243_cov_17.098361_pilon to pilon.fasta [pilon] Writing NODE_13643_length_243_cov_17.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13643_length_243_cov_17.098361_pilon to pilon.fasta [pilon] Writing NODE_13644_length_243_cov_17.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13644_length_243_cov_17.098361_pilon to pilon.fasta [pilon] Writing NODE_13645_length_243_cov_17.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13645_length_243_cov_17.098361_pilon to pilon.fasta [pilon] Writing NODE_13646_length_243_cov_17.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13646_length_243_cov_17.098361_pilon to pilon.fasta [pilon] Writing NODE_13647_length_243_cov_17.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13647_length_243_cov_17.081967_pilon to pilon.fasta [pilon] Writing NODE_13648_length_243_cov_17.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13648_length_243_cov_17.065574_pilon to pilon.fasta [pilon] Writing NODE_13649_length_243_cov_17.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13649_length_243_cov_17.024590_pilon to pilon.fasta [pilon] Writing NODE_13650_length_243_cov_17.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13650_length_243_cov_17.016393_pilon to pilon.fasta [pilon] Writing NODE_13651_length_243_cov_16.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13651_length_243_cov_16.991803_pilon to pilon.fasta [pilon] Writing NODE_13652_length_243_cov_16.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13652_length_243_cov_16.983607_pilon to pilon.fasta [pilon] Writing NODE_13653_length_243_cov_16.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13653_length_243_cov_16.975410_pilon to pilon.fasta [pilon] Writing NODE_13654_length_243_cov_16.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13654_length_243_cov_16.967213_pilon to pilon.fasta [pilon] Writing NODE_13655_length_243_cov_16.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13655_length_243_cov_16.950820_pilon to pilon.fasta [pilon] Writing NODE_13656_length_243_cov_16.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13656_length_243_cov_16.926230_pilon to pilon.fasta [pilon] Writing NODE_13657_length_243_cov_16.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13657_length_243_cov_16.918033_pilon to pilon.fasta [pilon] Writing NODE_13658_length_243_cov_16.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13658_length_243_cov_16.918033_pilon to pilon.fasta [pilon] Writing NODE_13659_length_243_cov_16.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13659_length_243_cov_16.901639_pilon to pilon.fasta [pilon] Writing NODE_13660_length_243_cov_16.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13660_length_243_cov_16.901639_pilon to pilon.fasta [pilon] Writing NODE_13661_length_243_cov_16.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13661_length_243_cov_16.844262_pilon to pilon.fasta [pilon] Writing NODE_13662_length_243_cov_16.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13662_length_243_cov_16.844262_pilon to pilon.fasta [pilon] Writing NODE_13663_length_243_cov_16.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13663_length_243_cov_16.836066_pilon to pilon.fasta [pilon] Writing NODE_13664_length_243_cov_16.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13664_length_243_cov_16.836066_pilon to pilon.fasta [pilon] Writing NODE_13665_length_243_cov_16.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13665_length_243_cov_16.827869_pilon to pilon.fasta [pilon] Writing NODE_13666_length_243_cov_16.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13666_length_243_cov_16.819672_pilon to pilon.fasta [pilon] Writing NODE_13667_length_243_cov_16.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13667_length_243_cov_16.811475_pilon to pilon.fasta [pilon] Writing NODE_13668_length_243_cov_16.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13668_length_243_cov_16.803279_pilon to pilon.fasta [pilon] Writing NODE_13669_length_243_cov_16.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13669_length_243_cov_16.803279_pilon to pilon.fasta [pilon] Writing NODE_13670_length_243_cov_16.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13670_length_243_cov_16.786885_pilon to pilon.fasta [pilon] Writing NODE_13671_length_243_cov_16.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13671_length_243_cov_16.778689_pilon to pilon.fasta [pilon] Writing NODE_13672_length_243_cov_16.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13672_length_243_cov_16.778689_pilon to pilon.fasta [pilon] Writing NODE_13673_length_243_cov_16.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13673_length_243_cov_16.778689_pilon to pilon.fasta [pilon] Writing NODE_13674_length_243_cov_16.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13674_length_243_cov_16.770492_pilon to pilon.fasta [pilon] Writing NODE_13675_length_243_cov_16.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13675_length_243_cov_16.762295_pilon to pilon.fasta [pilon] Writing NODE_13676_length_243_cov_16.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13676_length_243_cov_16.762295_pilon to pilon.fasta [pilon] Writing NODE_13677_length_243_cov_16.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13677_length_243_cov_16.754098_pilon to pilon.fasta [pilon] Writing NODE_13678_length_243_cov_16.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13678_length_243_cov_16.721311_pilon to pilon.fasta [pilon] Writing NODE_13679_length_243_cov_16.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13679_length_243_cov_16.672131_pilon to pilon.fasta [pilon] Writing NODE_13680_length_243_cov_16.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13680_length_243_cov_16.647541_pilon to pilon.fasta [pilon] Writing NODE_13681_length_243_cov_16.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13681_length_243_cov_16.647541_pilon to pilon.fasta [pilon] Writing NODE_13682_length_243_cov_16.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13682_length_243_cov_16.639344_pilon to pilon.fasta [pilon] Writing NODE_13683_length_243_cov_16.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13683_length_243_cov_16.598361_pilon to pilon.fasta [pilon] Writing NODE_13684_length_243_cov_16.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13684_length_243_cov_16.590164_pilon to pilon.fasta [pilon] Writing NODE_13685_length_243_cov_16.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13685_length_243_cov_16.581967_pilon to pilon.fasta [pilon] Writing NODE_13686_length_243_cov_16.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_13686_length_243_cov_16.557377_pilon to pilon.fasta [pilon] Writing NODE_13687_length_243_cov_16.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13687_length_243_cov_16.524590_pilon to pilon.fasta [pilon] Writing NODE_13688_length_243_cov_16.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13688_length_243_cov_16.516393_pilon to pilon.fasta [pilon] Writing NODE_13689_length_243_cov_16.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13689_length_243_cov_16.483607_pilon to pilon.fasta [pilon] Writing NODE_13690_length_243_cov_16.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13690_length_243_cov_16.483607_pilon to pilon.fasta [pilon] Writing NODE_13691_length_243_cov_16.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13691_length_243_cov_16.475410_pilon to pilon.fasta [pilon] Writing NODE_13692_length_243_cov_16.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13692_length_243_cov_16.467213_pilon to pilon.fasta [pilon] Writing NODE_13693_length_243_cov_16.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13693_length_243_cov_16.459016_pilon to pilon.fasta [pilon] Writing NODE_13694_length_243_cov_16.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13694_length_243_cov_16.450820_pilon to pilon.fasta [pilon] Writing NODE_13695_length_243_cov_16.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13695_length_243_cov_16.434426_pilon to pilon.fasta [pilon] Writing NODE_13696_length_243_cov_16.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13696_length_243_cov_16.434426_pilon to pilon.fasta [pilon] Writing NODE_13697_length_243_cov_16.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13697_length_243_cov_16.434426_pilon to pilon.fasta [pilon] Writing NODE_13698_length_243_cov_16.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13698_length_243_cov_16.426230_pilon to pilon.fasta [pilon] Writing NODE_13699_length_243_cov_16.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13699_length_243_cov_16.418033_pilon to pilon.fasta [pilon] Writing NODE_13700_length_243_cov_16.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_13700_length_243_cov_16.418033_pilon to pilon.fasta [pilon] Writing NODE_13701_length_243_cov_16.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_13701_length_243_cov_16.409836_pilon to pilon.fasta [pilon] Writing NODE_13702_length_243_cov_16.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13702_length_243_cov_16.401639_pilon to pilon.fasta [pilon] Writing NODE_13703_length_243_cov_16.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13703_length_243_cov_16.401639_pilon to pilon.fasta [pilon] Writing NODE_13704_length_243_cov_16.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13704_length_243_cov_16.393443_pilon to pilon.fasta [pilon] Writing NODE_13705_length_243_cov_16.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13705_length_243_cov_16.393443_pilon to pilon.fasta [pilon] Writing NODE_13706_length_243_cov_16.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13706_length_243_cov_16.377049_pilon to pilon.fasta [pilon] Writing NODE_13707_length_243_cov_16.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13707_length_243_cov_16.352459_pilon to pilon.fasta [pilon] Writing NODE_13708_length_243_cov_16.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13708_length_243_cov_16.352459_pilon to pilon.fasta [pilon] Writing NODE_13709_length_243_cov_16.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13709_length_243_cov_16.344262_pilon to pilon.fasta [pilon] Writing NODE_13710_length_243_cov_16.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13710_length_243_cov_16.336066_pilon to pilon.fasta [pilon] Writing NODE_13711_length_243_cov_16.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13711_length_243_cov_16.336066_pilon to pilon.fasta [pilon] Writing NODE_13712_length_243_cov_16.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13712_length_243_cov_16.319672_pilon to pilon.fasta [pilon] Writing NODE_13713_length_243_cov_16.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13713_length_243_cov_16.311475_pilon to pilon.fasta [pilon] Writing NODE_13714_length_243_cov_16.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13714_length_243_cov_16.295082_pilon to pilon.fasta [pilon] Writing NODE_13715_length_243_cov_16.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13715_length_243_cov_16.286885_pilon to pilon.fasta [pilon] Writing NODE_13716_length_243_cov_16.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13716_length_243_cov_16.286885_pilon to pilon.fasta [pilon] Writing NODE_13717_length_243_cov_16.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13717_length_243_cov_16.286885_pilon to pilon.fasta [pilon] Writing NODE_13718_length_243_cov_16.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13718_length_243_cov_16.254098_pilon to pilon.fasta [pilon] Writing NODE_13719_length_243_cov_16.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13719_length_243_cov_16.254098_pilon to pilon.fasta [pilon] Writing NODE_13720_length_243_cov_16.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13720_length_243_cov_16.254098_pilon to pilon.fasta [pilon] Writing NODE_13721_length_243_cov_16.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13721_length_243_cov_16.245902_pilon to pilon.fasta [pilon] Writing NODE_13722_length_243_cov_16.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13722_length_243_cov_16.245902_pilon to pilon.fasta [pilon] Writing NODE_13723_length_243_cov_16.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13723_length_243_cov_16.237705_pilon to pilon.fasta [pilon] Writing NODE_13724_length_243_cov_16.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13724_length_243_cov_16.221311_pilon to pilon.fasta [pilon] Writing NODE_13725_length_243_cov_16.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13725_length_243_cov_16.213115_pilon to pilon.fasta [pilon] Writing NODE_13726_length_243_cov_16.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13726_length_243_cov_16.213115_pilon to pilon.fasta [pilon] Writing NODE_13727_length_243_cov_16.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13727_length_243_cov_16.204918_pilon to pilon.fasta [pilon] Writing NODE_13728_length_243_cov_16.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13728_length_243_cov_16.188525_pilon to pilon.fasta [pilon] Writing NODE_13729_length_243_cov_16.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13729_length_243_cov_16.188525_pilon to pilon.fasta [pilon] Writing NODE_13730_length_243_cov_16.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13730_length_243_cov_16.180328_pilon to pilon.fasta [pilon] Writing NODE_13731_length_243_cov_16.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_13731_length_243_cov_16.163934_pilon to pilon.fasta [pilon] Writing NODE_13732_length_243_cov_16.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_13732_length_243_cov_16.163934_pilon to pilon.fasta [pilon] Writing NODE_13733_length_243_cov_16.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13733_length_243_cov_16.155738_pilon to pilon.fasta [pilon] Writing NODE_13734_length_243_cov_16.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13734_length_243_cov_16.155738_pilon to pilon.fasta [pilon] Writing NODE_13735_length_243_cov_16.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13735_length_243_cov_16.155738_pilon to pilon.fasta [pilon] Writing NODE_13736_length_243_cov_16.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13736_length_243_cov_16.139344_pilon to pilon.fasta [pilon] Writing NODE_13737_length_243_cov_16.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13737_length_243_cov_16.122951_pilon to pilon.fasta [pilon] Writing NODE_13738_length_243_cov_16.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13738_length_243_cov_16.122951_pilon to pilon.fasta [pilon] Writing NODE_13739_length_243_cov_16.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13739_length_243_cov_16.114754_pilon to pilon.fasta [pilon] Writing NODE_13740_length_243_cov_16.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13740_length_243_cov_16.114754_pilon to pilon.fasta [pilon] Writing NODE_13741_length_243_cov_16.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13741_length_243_cov_16.106557_pilon to pilon.fasta [pilon] Writing NODE_13742_length_243_cov_16.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13742_length_243_cov_16.106557_pilon to pilon.fasta [pilon] Writing NODE_13743_length_243_cov_16.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13743_length_243_cov_16.106557_pilon to pilon.fasta [pilon] Writing NODE_13744_length_243_cov_16.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13744_length_243_cov_16.098361_pilon to pilon.fasta [pilon] Writing NODE_13745_length_243_cov_16.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13745_length_243_cov_16.090164_pilon to pilon.fasta [pilon] Writing NODE_13746_length_243_cov_16.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13746_length_243_cov_16.090164_pilon to pilon.fasta [pilon] Writing NODE_13747_length_243_cov_16.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13747_length_243_cov_16.081967_pilon to pilon.fasta [pilon] Writing NODE_13748_length_243_cov_16.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13748_length_243_cov_16.073770_pilon to pilon.fasta [pilon] Writing NODE_13749_length_243_cov_16.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13749_length_243_cov_16.065574_pilon to pilon.fasta [pilon] Writing NODE_13750_length_243_cov_16.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13750_length_243_cov_16.049180_pilon to pilon.fasta [pilon] Writing NODE_13751_length_243_cov_16.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13751_length_243_cov_16.049180_pilon to pilon.fasta [pilon] Writing NODE_13752_length_243_cov_16.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13752_length_243_cov_16.016393_pilon to pilon.fasta [pilon] Writing NODE_13753_length_243_cov_16.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13753_length_243_cov_16.016393_pilon to pilon.fasta [pilon] Writing NODE_13754_length_243_cov_16.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13754_length_243_cov_16.008197_pilon to pilon.fasta [pilon] Writing NODE_13755_length_243_cov_16.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_13755_length_243_cov_16.000000_pilon to pilon.fasta [pilon] Writing NODE_13756_length_243_cov_15.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13756_length_243_cov_15.991803_pilon to pilon.fasta [pilon] Writing NODE_13757_length_243_cov_15.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13757_length_243_cov_15.991803_pilon to pilon.fasta [pilon] Writing NODE_13758_length_243_cov_15.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13758_length_243_cov_15.991803_pilon to pilon.fasta [pilon] Writing NODE_13759_length_243_cov_15.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13759_length_243_cov_15.975410_pilon to pilon.fasta [pilon] Writing NODE_13760_length_243_cov_15.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13760_length_243_cov_15.967213_pilon to pilon.fasta [pilon] Writing NODE_13761_length_243_cov_15.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13761_length_243_cov_15.959016_pilon to pilon.fasta [pilon] Writing NODE_13762_length_243_cov_15.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13762_length_243_cov_15.950820_pilon to pilon.fasta [pilon] Writing NODE_13763_length_243_cov_15.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13763_length_243_cov_15.934426_pilon to pilon.fasta [pilon] Writing NODE_13764_length_243_cov_15.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13764_length_243_cov_15.934426_pilon to pilon.fasta [pilon] Writing NODE_13765_length_243_cov_15.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13765_length_243_cov_15.926230_pilon to pilon.fasta [pilon] Writing NODE_13766_length_243_cov_15.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13766_length_243_cov_15.926230_pilon to pilon.fasta [pilon] Writing NODE_13767_length_243_cov_15.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13767_length_243_cov_15.926230_pilon to pilon.fasta [pilon] Writing NODE_13768_length_243_cov_15.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_13768_length_243_cov_15.909836_pilon to pilon.fasta [pilon] Writing NODE_13769_length_243_cov_15.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13769_length_243_cov_15.893443_pilon to pilon.fasta [pilon] Writing NODE_13770_length_243_cov_15.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13770_length_243_cov_15.877049_pilon to pilon.fasta [pilon] Writing NODE_13771_length_243_cov_15.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13771_length_243_cov_15.877049_pilon to pilon.fasta [pilon] Writing NODE_13772_length_243_cov_15.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13772_length_243_cov_15.860656_pilon to pilon.fasta [pilon] Writing NODE_13773_length_243_cov_15.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13773_length_243_cov_15.860656_pilon to pilon.fasta [pilon] Writing NODE_13774_length_243_cov_15.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13774_length_243_cov_15.852459_pilon to pilon.fasta [pilon] Writing NODE_13775_length_243_cov_15.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13775_length_243_cov_15.852459_pilon to pilon.fasta [pilon] Writing NODE_13776_length_243_cov_15.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13776_length_243_cov_15.852459_pilon to pilon.fasta [pilon] Writing NODE_13777_length_243_cov_15.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13777_length_243_cov_15.852459_pilon to pilon.fasta [pilon] Writing NODE_13778_length_243_cov_15.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13778_length_243_cov_15.844262_pilon to pilon.fasta [pilon] Writing NODE_13779_length_243_cov_15.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13779_length_243_cov_15.827869_pilon to pilon.fasta [pilon] Writing NODE_13780_length_243_cov_15.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13780_length_243_cov_15.819672_pilon to pilon.fasta [pilon] Writing NODE_13781_length_243_cov_15.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13781_length_243_cov_15.819672_pilon to pilon.fasta [pilon] Writing NODE_13782_length_243_cov_15.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13782_length_243_cov_15.803279_pilon to pilon.fasta [pilon] Writing NODE_13783_length_243_cov_15.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13783_length_243_cov_15.803279_pilon to pilon.fasta [pilon] Writing NODE_13784_length_243_cov_15.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13784_length_243_cov_15.803279_pilon to pilon.fasta [pilon] Writing NODE_13785_length_243_cov_15.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13785_length_243_cov_15.795082_pilon to pilon.fasta [pilon] Writing NODE_13786_length_243_cov_15.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13786_length_243_cov_15.795082_pilon to pilon.fasta [pilon] Writing NODE_13787_length_243_cov_15.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13787_length_243_cov_15.786885_pilon to pilon.fasta [pilon] Writing NODE_13788_length_243_cov_15.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13788_length_243_cov_15.786885_pilon to pilon.fasta [pilon] Writing NODE_13789_length_243_cov_15.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13789_length_243_cov_15.778689_pilon to pilon.fasta [pilon] Writing NODE_13790_length_243_cov_15.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13790_length_243_cov_15.778689_pilon to pilon.fasta [pilon] Writing NODE_13791_length_243_cov_15.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13791_length_243_cov_15.778689_pilon to pilon.fasta [pilon] Writing NODE_13792_length_243_cov_15.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13792_length_243_cov_15.762295_pilon to pilon.fasta [pilon] Writing NODE_13793_length_243_cov_15.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13793_length_243_cov_15.754098_pilon to pilon.fasta [pilon] Writing NODE_13794_length_243_cov_15.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13794_length_243_cov_15.754098_pilon to pilon.fasta [pilon] Writing NODE_13795_length_243_cov_15.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13795_length_243_cov_15.754098_pilon to pilon.fasta [pilon] Writing NODE_13796_length_243_cov_15.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13796_length_243_cov_15.745902_pilon to pilon.fasta [pilon] Writing NODE_13797_length_243_cov_15.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13797_length_243_cov_15.729508_pilon to pilon.fasta [pilon] Writing NODE_13798_length_243_cov_15.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_13798_length_243_cov_15.688525_pilon to pilon.fasta [pilon] Writing NODE_13799_length_243_cov_15.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13799_length_243_cov_15.680328_pilon to pilon.fasta [pilon] Writing NODE_13800_length_243_cov_15.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13800_length_243_cov_15.672131_pilon to pilon.fasta [pilon] Writing NODE_13801_length_243_cov_15.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13801_length_243_cov_15.672131_pilon to pilon.fasta [pilon] Writing NODE_13802_length_243_cov_15.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13802_length_243_cov_15.647541_pilon to pilon.fasta [pilon] Writing NODE_13803_length_243_cov_15.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13803_length_243_cov_15.639344_pilon to pilon.fasta [pilon] Writing NODE_13804_length_243_cov_15.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13804_length_243_cov_15.639344_pilon to pilon.fasta [pilon] Writing NODE_13805_length_243_cov_15.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_13805_length_243_cov_15.622951_pilon to pilon.fasta [pilon] Writing NODE_13806_length_243_cov_15.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13806_length_243_cov_15.581967_pilon to pilon.fasta [pilon] Writing NODE_13807_length_243_cov_15.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13807_length_243_cov_15.573770_pilon to pilon.fasta [pilon] Writing NODE_13808_length_243_cov_15.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13808_length_243_cov_15.573770_pilon to pilon.fasta [pilon] Writing NODE_13809_length_243_cov_15.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13809_length_243_cov_15.573770_pilon to pilon.fasta [pilon] Writing NODE_13810_length_243_cov_15.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13810_length_243_cov_15.565574_pilon to pilon.fasta [pilon] Writing NODE_13811_length_243_cov_15.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_13811_length_243_cov_15.557377_pilon to pilon.fasta [pilon] Writing NODE_13812_length_243_cov_15.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13812_length_243_cov_15.549180_pilon to pilon.fasta [pilon] Writing NODE_13813_length_243_cov_15.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13813_length_243_cov_15.549180_pilon to pilon.fasta [pilon] Writing NODE_13814_length_243_cov_15.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13814_length_243_cov_15.532787_pilon to pilon.fasta [pilon] Writing NODE_13815_length_243_cov_15.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13815_length_243_cov_15.524590_pilon to pilon.fasta [pilon] Writing NODE_13816_length_243_cov_15.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13816_length_243_cov_15.524590_pilon to pilon.fasta [pilon] Writing NODE_13817_length_243_cov_15.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13817_length_243_cov_15.524590_pilon to pilon.fasta [pilon] Writing NODE_13818_length_243_cov_15.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13818_length_243_cov_15.524590_pilon to pilon.fasta [pilon] Writing NODE_13819_length_243_cov_15.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13819_length_243_cov_15.516393_pilon to pilon.fasta [pilon] Writing NODE_13820_length_243_cov_15.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13820_length_243_cov_15.516393_pilon to pilon.fasta [pilon] Writing NODE_13821_length_243_cov_15.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_13821_length_243_cov_15.500000_pilon to pilon.fasta [pilon] Writing NODE_13822_length_243_cov_15.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13822_length_243_cov_15.459016_pilon to pilon.fasta [pilon] Writing NODE_13823_length_243_cov_15.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13823_length_243_cov_15.450820_pilon to pilon.fasta [pilon] Writing NODE_13824_length_243_cov_15.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13824_length_243_cov_15.450820_pilon to pilon.fasta [pilon] Writing NODE_13825_length_243_cov_15.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_13825_length_243_cov_15.442623_pilon to pilon.fasta [pilon] Writing NODE_13826_length_243_cov_15.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13826_length_243_cov_15.434426_pilon to pilon.fasta [pilon] Writing NODE_13827_length_243_cov_15.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_13827_length_243_cov_15.409836_pilon to pilon.fasta [pilon] Writing NODE_13828_length_243_cov_15.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13828_length_243_cov_15.401639_pilon to pilon.fasta [pilon] Writing NODE_13829_length_243_cov_15.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13829_length_243_cov_15.385246_pilon to pilon.fasta [pilon] Writing NODE_13830_length_243_cov_15.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13830_length_243_cov_15.385246_pilon to pilon.fasta [pilon] Writing NODE_13831_length_243_cov_15.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13831_length_243_cov_15.385246_pilon to pilon.fasta [pilon] Writing NODE_13832_length_243_cov_15.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13832_length_243_cov_15.385246_pilon to pilon.fasta [pilon] Writing NODE_13833_length_243_cov_15.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13833_length_243_cov_15.377049_pilon to pilon.fasta [pilon] Writing NODE_13834_length_243_cov_15.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13834_length_243_cov_15.377049_pilon to pilon.fasta [pilon] Writing NODE_13835_length_243_cov_15.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13835_length_243_cov_15.377049_pilon to pilon.fasta [pilon] Writing NODE_13836_length_243_cov_15.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13836_length_243_cov_15.368852_pilon to pilon.fasta [pilon] Writing NODE_13837_length_243_cov_15.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13837_length_243_cov_15.368852_pilon to pilon.fasta [pilon] Writing NODE_13838_length_243_cov_15.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13838_length_243_cov_15.368852_pilon to pilon.fasta [pilon] Writing NODE_13839_length_243_cov_15.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13839_length_243_cov_15.360656_pilon to pilon.fasta [pilon] Writing NODE_13840_length_243_cov_15.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13840_length_243_cov_15.352459_pilon to pilon.fasta [pilon] Writing NODE_13841_length_243_cov_15.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13841_length_243_cov_15.352459_pilon to pilon.fasta [pilon] Writing NODE_13842_length_243_cov_15.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13842_length_243_cov_15.352459_pilon to pilon.fasta [pilon] Writing NODE_13843_length_243_cov_15.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13843_length_243_cov_15.336066_pilon to pilon.fasta [pilon] Writing NODE_13844_length_243_cov_15.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13844_length_243_cov_15.336066_pilon to pilon.fasta [pilon] Writing NODE_13845_length_243_cov_15.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13845_length_243_cov_15.336066_pilon to pilon.fasta [pilon] Writing NODE_13846_length_243_cov_15.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13846_length_243_cov_15.327869_pilon to pilon.fasta [pilon] Writing NODE_13847_length_243_cov_15.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13847_length_243_cov_15.327869_pilon to pilon.fasta [pilon] Writing NODE_13848_length_243_cov_15.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13848_length_243_cov_15.303279_pilon to pilon.fasta [pilon] Writing NODE_13849_length_243_cov_15.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13849_length_243_cov_15.303279_pilon to pilon.fasta [pilon] Writing NODE_13850_length_243_cov_15.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13850_length_243_cov_15.303279_pilon to pilon.fasta [pilon] Writing NODE_13851_length_243_cov_15.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13851_length_243_cov_15.303279_pilon to pilon.fasta [pilon] Writing NODE_13852_length_243_cov_15.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13852_length_243_cov_15.295082_pilon to pilon.fasta [pilon] Writing NODE_13853_length_243_cov_15.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13853_length_243_cov_15.295082_pilon to pilon.fasta [pilon] Writing NODE_13854_length_243_cov_15.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13854_length_243_cov_15.286885_pilon to pilon.fasta [pilon] Writing NODE_13855_length_243_cov_15.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13855_length_243_cov_15.270492_pilon to pilon.fasta [pilon] Writing NODE_13856_length_243_cov_15.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13856_length_243_cov_15.262295_pilon to pilon.fasta [pilon] Writing NODE_13857_length_243_cov_15.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13857_length_243_cov_15.254098_pilon to pilon.fasta [pilon] Writing NODE_13858_length_243_cov_15.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13858_length_243_cov_15.237705_pilon to pilon.fasta [pilon] Writing NODE_13859_length_243_cov_15.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13859_length_243_cov_15.213115_pilon to pilon.fasta [pilon] Writing NODE_13860_length_243_cov_15.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13860_length_243_cov_15.204918_pilon to pilon.fasta [pilon] Writing NODE_13861_length_243_cov_15.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13861_length_243_cov_15.180328_pilon to pilon.fasta [pilon] Writing NODE_13862_length_243_cov_15.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_13862_length_243_cov_15.180328_pilon to pilon.fasta [pilon] Writing NODE_13863_length_243_cov_15.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13863_length_243_cov_15.172131_pilon to pilon.fasta [pilon] Writing NODE_13864_length_243_cov_15.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_13864_length_243_cov_15.163934_pilon to pilon.fasta [pilon] Writing NODE_13865_length_243_cov_15.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13865_length_243_cov_15.155738_pilon to pilon.fasta [pilon] Writing NODE_13866_length_243_cov_15.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13866_length_243_cov_15.155738_pilon to pilon.fasta [pilon] Writing NODE_13867_length_243_cov_15.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13867_length_243_cov_15.155738_pilon to pilon.fasta [pilon] Writing NODE_13868_length_243_cov_15.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13868_length_243_cov_15.155738_pilon to pilon.fasta [pilon] Writing NODE_13869_length_243_cov_15.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13869_length_243_cov_15.147541_pilon to pilon.fasta [pilon] Writing NODE_13870_length_243_cov_15.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_13870_length_243_cov_15.131148_pilon to pilon.fasta [pilon] Writing NODE_13871_length_243_cov_15.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13871_length_243_cov_15.114754_pilon to pilon.fasta [pilon] Writing NODE_13872_length_243_cov_15.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_13872_length_243_cov_15.114754_pilon to pilon.fasta [pilon] Writing NODE_13873_length_243_cov_15.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13873_length_243_cov_15.106557_pilon to pilon.fasta [pilon] Writing NODE_13874_length_243_cov_15.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_13874_length_243_cov_15.106557_pilon to pilon.fasta [pilon] Writing NODE_13875_length_243_cov_15.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13875_length_243_cov_15.098361_pilon to pilon.fasta [pilon] Writing NODE_13876_length_243_cov_15.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13876_length_243_cov_15.081967_pilon to pilon.fasta [pilon] Writing NODE_13877_length_243_cov_15.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_13877_length_243_cov_15.073770_pilon to pilon.fasta [pilon] Writing NODE_13878_length_243_cov_15.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13878_length_243_cov_15.065574_pilon to pilon.fasta [pilon] Writing NODE_13879_length_243_cov_15.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13879_length_243_cov_15.040984_pilon to pilon.fasta [pilon] Writing NODE_13880_length_243_cov_15.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13880_length_243_cov_15.032787_pilon to pilon.fasta [pilon] Writing NODE_13881_length_243_cov_15.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13881_length_243_cov_15.032787_pilon to pilon.fasta [pilon] Writing NODE_13882_length_243_cov_15.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13882_length_243_cov_15.024590_pilon to pilon.fasta [pilon] Writing NODE_13883_length_243_cov_15.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13883_length_243_cov_15.024590_pilon to pilon.fasta [pilon] Writing NODE_13884_length_243_cov_15.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13884_length_243_cov_15.016393_pilon to pilon.fasta [pilon] Writing NODE_13885_length_243_cov_15.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13885_length_243_cov_15.016393_pilon to pilon.fasta [pilon] Writing NODE_13886_length_243_cov_15.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13886_length_243_cov_15.008197_pilon to pilon.fasta [pilon] Writing NODE_13887_length_243_cov_15.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13887_length_243_cov_15.008197_pilon to pilon.fasta [pilon] Writing NODE_13888_length_243_cov_15.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13888_length_243_cov_15.008197_pilon to pilon.fasta [pilon] Writing NODE_13889_length_243_cov_15.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_13889_length_243_cov_15.000000_pilon to pilon.fasta [pilon] Writing NODE_13890_length_243_cov_14.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13890_length_243_cov_14.991803_pilon to pilon.fasta [pilon] Writing NODE_13891_length_243_cov_14.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13891_length_243_cov_14.991803_pilon to pilon.fasta [pilon] Writing NODE_13892_length_243_cov_14.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_13892_length_243_cov_14.975410_pilon to pilon.fasta [pilon] Writing NODE_13893_length_243_cov_14.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13893_length_243_cov_14.967213_pilon to pilon.fasta [pilon] Writing NODE_13894_length_243_cov_14.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13894_length_243_cov_14.959016_pilon to pilon.fasta [pilon] Writing NODE_13895_length_243_cov_14.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13895_length_243_cov_14.950820_pilon to pilon.fasta [pilon] Writing NODE_13896_length_243_cov_14.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13896_length_243_cov_14.950820_pilon to pilon.fasta [pilon] Writing NODE_13897_length_243_cov_14.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_13897_length_243_cov_14.934426_pilon to pilon.fasta [pilon] Writing NODE_13898_length_243_cov_14.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13898_length_243_cov_14.926230_pilon to pilon.fasta [pilon] Writing NODE_13899_length_243_cov_14.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_13899_length_243_cov_14.901639_pilon to pilon.fasta [pilon] Writing NODE_13900_length_243_cov_14.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_13900_length_243_cov_14.893443_pilon to pilon.fasta [pilon] Writing NODE_13901_length_243_cov_14.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13901_length_243_cov_14.877049_pilon to pilon.fasta [pilon] Writing NODE_13902_length_243_cov_14.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13902_length_243_cov_14.868852_pilon to pilon.fasta [pilon] Writing NODE_13903_length_243_cov_14.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13903_length_243_cov_14.868852_pilon to pilon.fasta [pilon] Writing NODE_13904_length_243_cov_14.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_13904_length_243_cov_14.860656_pilon to pilon.fasta [pilon] Writing NODE_13905_length_243_cov_14.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13905_length_243_cov_14.852459_pilon to pilon.fasta [pilon] Writing NODE_13906_length_243_cov_14.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_13906_length_243_cov_14.852459_pilon to pilon.fasta [pilon] Writing NODE_13907_length_243_cov_14.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_13907_length_243_cov_14.844262_pilon to pilon.fasta [pilon] Writing NODE_13908_length_243_cov_14.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_13908_length_243_cov_14.827869_pilon to pilon.fasta [pilon] Writing NODE_13909_length_243_cov_14.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13909_length_243_cov_14.819672_pilon to pilon.fasta [pilon] Writing NODE_13910_length_243_cov_14.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13910_length_243_cov_14.811475_pilon to pilon.fasta [pilon] Writing NODE_13911_length_243_cov_14.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13911_length_243_cov_14.811475_pilon to pilon.fasta [pilon] Writing NODE_13912_length_243_cov_14.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13912_length_243_cov_14.795082_pilon to pilon.fasta [pilon] Writing NODE_13913_length_243_cov_14.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13913_length_243_cov_14.795082_pilon to pilon.fasta [pilon] Writing NODE_13914_length_243_cov_14.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_13914_length_243_cov_14.795082_pilon to pilon.fasta [pilon] Writing NODE_13915_length_243_cov_14.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13915_length_243_cov_14.786885_pilon to pilon.fasta [pilon] Writing NODE_13916_length_243_cov_14.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13916_length_243_cov_14.786885_pilon to pilon.fasta [pilon] Writing NODE_13917_length_243_cov_14.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13917_length_243_cov_14.786885_pilon to pilon.fasta [pilon] Writing NODE_13918_length_243_cov_14.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13918_length_243_cov_14.778689_pilon to pilon.fasta [pilon] Writing NODE_13919_length_243_cov_14.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_13919_length_243_cov_14.762295_pilon to pilon.fasta [pilon] Writing NODE_13920_length_243_cov_14.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13920_length_243_cov_14.737705_pilon to pilon.fasta [pilon] Writing NODE_13921_length_243_cov_14.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13921_length_243_cov_14.737705_pilon to pilon.fasta [pilon] Writing NODE_13922_length_243_cov_14.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13922_length_243_cov_14.721311_pilon to pilon.fasta [pilon] Writing NODE_13923_length_243_cov_14.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13923_length_243_cov_14.721311_pilon to pilon.fasta [pilon] Writing NODE_13924_length_243_cov_14.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13924_length_243_cov_14.713115_pilon to pilon.fasta [pilon] Writing NODE_13925_length_243_cov_14.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13925_length_243_cov_14.713115_pilon to pilon.fasta [pilon] Writing NODE_13926_length_243_cov_14.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13926_length_243_cov_14.713115_pilon to pilon.fasta [pilon] Writing NODE_13927_length_243_cov_14.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13927_length_243_cov_14.713115_pilon to pilon.fasta [pilon] Writing NODE_13928_length_243_cov_14.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_13928_length_243_cov_14.704918_pilon to pilon.fasta [pilon] Writing NODE_13929_length_243_cov_14.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13929_length_243_cov_14.672131_pilon to pilon.fasta [pilon] Writing NODE_13930_length_243_cov_14.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_13930_length_243_cov_14.672131_pilon to pilon.fasta [pilon] Writing NODE_13931_length_243_cov_14.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_13931_length_243_cov_14.663934_pilon to pilon.fasta [pilon] Writing NODE_13932_length_243_cov_14.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_13932_length_243_cov_14.663934_pilon to pilon.fasta [pilon] Writing NODE_13933_length_243_cov_14.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13933_length_243_cov_14.655738_pilon to pilon.fasta [pilon] Writing NODE_13934_length_243_cov_14.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_13934_length_243_cov_14.655738_pilon to pilon.fasta [pilon] Writing NODE_13935_length_243_cov_14.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_13935_length_243_cov_14.647541_pilon to pilon.fasta [pilon] Writing NODE_13936_length_243_cov_14.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13936_length_243_cov_14.639344_pilon to pilon.fasta [pilon] Writing NODE_13937_length_243_cov_14.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_13937_length_243_cov_14.639344_pilon to pilon.fasta [pilon] Writing NODE_13938_length_243_cov_14.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_13938_length_243_cov_14.598361_pilon to pilon.fasta [pilon] Writing NODE_13939_length_243_cov_14.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_13939_length_243_cov_14.590164_pilon to pilon.fasta [pilon] Writing NODE_13940_length_243_cov_14.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_13940_length_243_cov_14.581967_pilon to pilon.fasta [pilon] Writing NODE_13941_length_243_cov_14.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13941_length_243_cov_14.565574_pilon to pilon.fasta [pilon] Writing NODE_13942_length_243_cov_14.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13942_length_243_cov_14.565574_pilon to pilon.fasta [pilon] Writing NODE_13943_length_243_cov_14.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13943_length_243_cov_14.565574_pilon to pilon.fasta [pilon] Writing NODE_13944_length_243_cov_14.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_13944_length_243_cov_14.565574_pilon to pilon.fasta [pilon] Writing NODE_13945_length_243_cov_14.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_13945_length_243_cov_14.549180_pilon to pilon.fasta [pilon] Writing NODE_13946_length_243_cov_14.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_13946_length_243_cov_14.540984_pilon to pilon.fasta [pilon] Writing NODE_13947_length_243_cov_14.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_13947_length_243_cov_14.532787_pilon to pilon.fasta [pilon] Writing NODE_13948_length_243_cov_14.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_13948_length_243_cov_14.524590_pilon to pilon.fasta [pilon] Writing NODE_13949_length_243_cov_14.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13949_length_243_cov_14.516393_pilon to pilon.fasta [pilon] Writing NODE_13950_length_243_cov_14.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_13950_length_243_cov_14.516393_pilon to pilon.fasta [pilon] Writing NODE_13951_length_243_cov_14.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_13951_length_243_cov_14.508197_pilon to pilon.fasta [pilon] Writing NODE_13952_length_243_cov_14.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_13952_length_243_cov_14.500000_pilon to pilon.fasta [pilon] Writing NODE_13953_length_243_cov_14.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_13953_length_243_cov_14.491803_pilon to pilon.fasta [pilon] Writing NODE_13954_length_243_cov_14.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_13954_length_243_cov_14.483607_pilon to pilon.fasta [pilon] Writing NODE_13955_length_243_cov_14.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13955_length_243_cov_14.467213_pilon to pilon.fasta [pilon] Writing NODE_13956_length_243_cov_14.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_13956_length_243_cov_14.467213_pilon to pilon.fasta [pilon] Writing NODE_13957_length_243_cov_14.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13957_length_243_cov_14.459016_pilon to pilon.fasta [pilon] Writing NODE_13958_length_243_cov_14.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_13958_length_243_cov_14.459016_pilon to pilon.fasta [pilon] Writing NODE_13959_length_243_cov_14.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13959_length_243_cov_14.450820_pilon to pilon.fasta [pilon] Writing NODE_13960_length_243_cov_14.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_13960_length_243_cov_14.450820_pilon to pilon.fasta [pilon] Writing NODE_13961_length_243_cov_14.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_13961_length_243_cov_14.442623_pilon to pilon.fasta [pilon] Writing NODE_13962_length_243_cov_14.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_13962_length_243_cov_14.442623_pilon to pilon.fasta [pilon] Writing NODE_13963_length_243_cov_14.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_13963_length_243_cov_14.426230_pilon to pilon.fasta [pilon] Writing NODE_13964_length_243_cov_14.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_13964_length_243_cov_14.385246_pilon to pilon.fasta [pilon] Writing NODE_13965_length_243_cov_14.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13965_length_243_cov_14.377049_pilon to pilon.fasta [pilon] Writing NODE_13966_length_243_cov_14.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13966_length_243_cov_14.377049_pilon to pilon.fasta [pilon] Writing NODE_13967_length_243_cov_14.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_13967_length_243_cov_14.377049_pilon to pilon.fasta [pilon] Writing NODE_13968_length_243_cov_14.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_13968_length_243_cov_14.368852_pilon to pilon.fasta [pilon] Writing NODE_13969_length_243_cov_14.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_13969_length_243_cov_14.336066_pilon to pilon.fasta [pilon] Writing NODE_13970_length_243_cov_14.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_13970_length_243_cov_14.319672_pilon to pilon.fasta [pilon] Writing NODE_13971_length_243_cov_14.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_13971_length_243_cov_14.311475_pilon to pilon.fasta [pilon] Writing NODE_13972_length_243_cov_14.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13972_length_243_cov_14.303279_pilon to pilon.fasta [pilon] Writing NODE_13973_length_243_cov_14.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_13973_length_243_cov_14.303279_pilon to pilon.fasta [pilon] Writing NODE_13974_length_243_cov_14.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13974_length_243_cov_14.286885_pilon to pilon.fasta [pilon] Writing NODE_13975_length_243_cov_14.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_13975_length_243_cov_14.286885_pilon to pilon.fasta [pilon] Writing NODE_13976_length_243_cov_14.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13976_length_243_cov_14.278689_pilon to pilon.fasta [pilon] Writing NODE_13977_length_243_cov_14.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13977_length_243_cov_14.278689_pilon to pilon.fasta [pilon] Writing NODE_13978_length_243_cov_14.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13978_length_243_cov_14.278689_pilon to pilon.fasta [pilon] Writing NODE_13979_length_243_cov_14.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13979_length_243_cov_14.278689_pilon to pilon.fasta [pilon] Writing NODE_13980_length_243_cov_14.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_13980_length_243_cov_14.278689_pilon to pilon.fasta [pilon] Writing NODE_13981_length_243_cov_14.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13981_length_243_cov_14.270492_pilon to pilon.fasta [pilon] Writing NODE_13982_length_243_cov_14.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13982_length_243_cov_14.270492_pilon to pilon.fasta [pilon] Writing NODE_13983_length_243_cov_14.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13983_length_243_cov_14.270492_pilon to pilon.fasta [pilon] Writing NODE_13984_length_243_cov_14.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_13984_length_243_cov_14.270492_pilon to pilon.fasta [pilon] Writing NODE_13985_length_243_cov_14.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13985_length_243_cov_14.254098_pilon to pilon.fasta [pilon] Writing NODE_13986_length_243_cov_14.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_13986_length_243_cov_14.254098_pilon to pilon.fasta [pilon] Writing NODE_13987_length_243_cov_14.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13987_length_243_cov_14.245902_pilon to pilon.fasta [pilon] Writing NODE_13988_length_243_cov_14.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_13988_length_243_cov_14.245902_pilon to pilon.fasta [pilon] Writing NODE_13989_length_243_cov_14.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13989_length_243_cov_14.237705_pilon to pilon.fasta [pilon] Writing NODE_13990_length_243_cov_14.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_13990_length_243_cov_14.237705_pilon to pilon.fasta [pilon] Writing NODE_13991_length_243_cov_14.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_13991_length_243_cov_14.229508_pilon to pilon.fasta [pilon] Writing NODE_13992_length_243_cov_14.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13992_length_243_cov_14.221311_pilon to pilon.fasta [pilon] Writing NODE_13993_length_243_cov_14.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13993_length_243_cov_14.221311_pilon to pilon.fasta [pilon] Writing NODE_13994_length_243_cov_14.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13994_length_243_cov_14.221311_pilon to pilon.fasta [pilon] Writing NODE_13995_length_243_cov_14.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_13995_length_243_cov_14.221311_pilon to pilon.fasta [pilon] Writing NODE_13996_length_243_cov_14.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13996_length_243_cov_14.213115_pilon to pilon.fasta [pilon] Writing NODE_13997_length_243_cov_14.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13997_length_243_cov_14.213115_pilon to pilon.fasta [pilon] Writing NODE_13998_length_243_cov_14.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_13998_length_243_cov_14.213115_pilon to pilon.fasta [pilon] Writing NODE_13999_length_243_cov_14.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_13999_length_243_cov_14.196721_pilon to pilon.fasta [pilon] Writing NODE_14000_length_243_cov_14.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14000_length_243_cov_14.180328_pilon to pilon.fasta [pilon] Writing NODE_14001_length_243_cov_14.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14001_length_243_cov_14.172131_pilon to pilon.fasta [pilon] Writing NODE_14002_length_243_cov_14.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14002_length_243_cov_14.163934_pilon to pilon.fasta [pilon] Writing NODE_14003_length_243_cov_14.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14003_length_243_cov_14.163934_pilon to pilon.fasta [pilon] Writing NODE_14004_length_243_cov_14.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14004_length_243_cov_14.163934_pilon to pilon.fasta [pilon] Writing NODE_14005_length_243_cov_14.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14005_length_243_cov_14.155738_pilon to pilon.fasta [pilon] Writing NODE_14006_length_243_cov_14.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14006_length_243_cov_14.147541_pilon to pilon.fasta [pilon] Writing NODE_14007_length_243_cov_14.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14007_length_243_cov_14.139344_pilon to pilon.fasta [pilon] Writing NODE_14008_length_243_cov_14.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14008_length_243_cov_14.139344_pilon to pilon.fasta [pilon] Writing NODE_14009_length_243_cov_14.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14009_length_243_cov_14.139344_pilon to pilon.fasta [pilon] Writing NODE_14010_length_243_cov_14.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14010_length_243_cov_14.131148_pilon to pilon.fasta [pilon] Writing NODE_14011_length_243_cov_14.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14011_length_243_cov_14.131148_pilon to pilon.fasta [pilon] Writing NODE_14012_length_243_cov_14.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14012_length_243_cov_14.122951_pilon to pilon.fasta [pilon] Writing NODE_14013_length_243_cov_14.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14013_length_243_cov_14.106557_pilon to pilon.fasta [pilon] Writing NODE_14014_length_243_cov_14.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14014_length_243_cov_14.098361_pilon to pilon.fasta [pilon] Writing NODE_14015_length_243_cov_14.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14015_length_243_cov_14.090164_pilon to pilon.fasta [pilon] Writing NODE_14016_length_243_cov_14.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14016_length_243_cov_14.081967_pilon to pilon.fasta [pilon] Writing NODE_14017_length_243_cov_14.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_14017_length_243_cov_14.065574_pilon to pilon.fasta [pilon] Writing NODE_14018_length_243_cov_14.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14018_length_243_cov_14.057377_pilon to pilon.fasta [pilon] Writing NODE_14019_length_243_cov_14.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14019_length_243_cov_14.040984_pilon to pilon.fasta [pilon] Writing NODE_14020_length_243_cov_14.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14020_length_243_cov_14.032787_pilon to pilon.fasta [pilon] Writing NODE_14021_length_243_cov_14.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14021_length_243_cov_14.024590_pilon to pilon.fasta [pilon] Writing NODE_14022_length_243_cov_14.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14022_length_243_cov_14.024590_pilon to pilon.fasta [pilon] Writing NODE_14023_length_243_cov_14.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14023_length_243_cov_14.024590_pilon to pilon.fasta [pilon] Writing NODE_14024_length_243_cov_14.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14024_length_243_cov_14.024590_pilon to pilon.fasta [pilon] Writing NODE_14025_length_243_cov_14.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14025_length_243_cov_14.008197_pilon to pilon.fasta [pilon] Writing NODE_14026_length_243_cov_14.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14026_length_243_cov_14.008197_pilon to pilon.fasta [pilon] Writing NODE_14027_length_243_cov_14.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14027_length_243_cov_14.000000_pilon to pilon.fasta [pilon] Writing NODE_14028_length_243_cov_13.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14028_length_243_cov_13.991803_pilon to pilon.fasta [pilon] Writing NODE_14029_length_243_cov_13.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14029_length_243_cov_13.983607_pilon to pilon.fasta [pilon] Writing NODE_14030_length_243_cov_13.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14030_length_243_cov_13.975410_pilon to pilon.fasta [pilon] Writing NODE_14031_length_243_cov_13.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14031_length_243_cov_13.975410_pilon to pilon.fasta [pilon] Writing NODE_14032_length_243_cov_13.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14032_length_243_cov_13.959016_pilon to pilon.fasta [pilon] Writing NODE_14033_length_243_cov_13.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14033_length_243_cov_13.959016_pilon to pilon.fasta [pilon] Writing NODE_14034_length_243_cov_13.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14034_length_243_cov_13.950820_pilon to pilon.fasta [pilon] Writing NODE_14035_length_243_cov_13.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14035_length_243_cov_13.934426_pilon to pilon.fasta [pilon] Writing NODE_14036_length_243_cov_13.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14036_length_243_cov_13.934426_pilon to pilon.fasta [pilon] Writing NODE_14037_length_243_cov_13.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14037_length_243_cov_13.926230_pilon to pilon.fasta [pilon] Writing NODE_14038_length_243_cov_13.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14038_length_243_cov_13.918033_pilon to pilon.fasta [pilon] Writing NODE_14039_length_243_cov_13.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14039_length_243_cov_13.909836_pilon to pilon.fasta [pilon] Writing NODE_14040_length_243_cov_13.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14040_length_243_cov_13.909836_pilon to pilon.fasta [pilon] Writing NODE_14041_length_243_cov_13.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14041_length_243_cov_13.909836_pilon to pilon.fasta [pilon] Writing NODE_14042_length_243_cov_13.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14042_length_243_cov_13.901639_pilon to pilon.fasta [pilon] Writing NODE_14043_length_243_cov_13.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14043_length_243_cov_13.901639_pilon to pilon.fasta [pilon] Writing NODE_14044_length_243_cov_13.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14044_length_243_cov_13.868852_pilon to pilon.fasta [pilon] Writing NODE_14045_length_243_cov_13.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14045_length_243_cov_13.860656_pilon to pilon.fasta [pilon] Writing NODE_14046_length_243_cov_13.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14046_length_243_cov_13.852459_pilon to pilon.fasta [pilon] Writing NODE_14047_length_243_cov_13.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14047_length_243_cov_13.852459_pilon to pilon.fasta [pilon] Writing NODE_14048_length_243_cov_13.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14048_length_243_cov_13.852459_pilon to pilon.fasta [pilon] Writing NODE_14049_length_243_cov_13.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_14049_length_243_cov_13.844262_pilon to pilon.fasta [pilon] Writing NODE_14050_length_243_cov_13.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14050_length_243_cov_13.819672_pilon to pilon.fasta [pilon] Writing NODE_14051_length_243_cov_13.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14051_length_243_cov_13.819672_pilon to pilon.fasta [pilon] Writing NODE_14052_length_243_cov_13.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14052_length_243_cov_13.819672_pilon to pilon.fasta [pilon] Writing NODE_14053_length_243_cov_13.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_14053_length_243_cov_13.811475_pilon to pilon.fasta [pilon] Writing NODE_14054_length_243_cov_13.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14054_length_243_cov_13.795082_pilon to pilon.fasta [pilon] Writing NODE_14055_length_243_cov_13.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14055_length_243_cov_13.795082_pilon to pilon.fasta [pilon] Writing NODE_14056_length_243_cov_13.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14056_length_243_cov_13.786885_pilon to pilon.fasta [pilon] Writing NODE_14057_length_243_cov_13.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14057_length_243_cov_13.778689_pilon to pilon.fasta [pilon] Writing NODE_14058_length_243_cov_13.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14058_length_243_cov_13.778689_pilon to pilon.fasta [pilon] Writing NODE_14059_length_243_cov_13.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14059_length_243_cov_13.770492_pilon to pilon.fasta [pilon] Writing NODE_14060_length_243_cov_13.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14060_length_243_cov_13.762295_pilon to pilon.fasta [pilon] Writing NODE_14061_length_243_cov_13.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14061_length_243_cov_13.762295_pilon to pilon.fasta [pilon] Writing NODE_14062_length_243_cov_13.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14062_length_243_cov_13.762295_pilon to pilon.fasta [pilon] Writing NODE_14063_length_243_cov_13.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14063_length_243_cov_13.762295_pilon to pilon.fasta [pilon] Writing NODE_14064_length_243_cov_13.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14064_length_243_cov_13.721311_pilon to pilon.fasta [pilon] Writing NODE_14065_length_243_cov_13.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14065_length_243_cov_13.704918_pilon to pilon.fasta [pilon] Writing NODE_14066_length_243_cov_13.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14066_length_243_cov_13.704918_pilon to pilon.fasta [pilon] Writing NODE_14067_length_243_cov_13.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14067_length_243_cov_13.704918_pilon to pilon.fasta [pilon] Writing NODE_14068_length_243_cov_13.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14068_length_243_cov_13.688525_pilon to pilon.fasta [pilon] Writing NODE_14069_length_243_cov_13.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14069_length_243_cov_13.680328_pilon to pilon.fasta [pilon] Writing NODE_14070_length_243_cov_13.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14070_length_243_cov_13.672131_pilon to pilon.fasta [pilon] Writing NODE_14071_length_243_cov_13.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14071_length_243_cov_13.663934_pilon to pilon.fasta [pilon] Writing NODE_14072_length_243_cov_13.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14072_length_243_cov_13.663934_pilon to pilon.fasta [pilon] Writing NODE_14073_length_243_cov_13.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14073_length_243_cov_13.655738_pilon to pilon.fasta [pilon] Writing NODE_14074_length_243_cov_13.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14074_length_243_cov_13.655738_pilon to pilon.fasta [pilon] Writing NODE_14075_length_243_cov_13.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14075_length_243_cov_13.655738_pilon to pilon.fasta [pilon] Writing NODE_14076_length_243_cov_13.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14076_length_243_cov_13.647541_pilon to pilon.fasta [pilon] Writing NODE_14077_length_243_cov_13.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14077_length_243_cov_13.647541_pilon to pilon.fasta [pilon] Writing NODE_14078_length_243_cov_13.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14078_length_243_cov_13.639344_pilon to pilon.fasta [pilon] Writing NODE_14079_length_243_cov_13.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14079_length_243_cov_13.639344_pilon to pilon.fasta [pilon] Writing NODE_14080_length_243_cov_13.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14080_length_243_cov_13.622951_pilon to pilon.fasta [pilon] Writing NODE_14081_length_243_cov_13.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14081_length_243_cov_13.622951_pilon to pilon.fasta [pilon] Writing NODE_14082_length_243_cov_13.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14082_length_243_cov_13.614754_pilon to pilon.fasta [pilon] Writing NODE_14083_length_243_cov_13.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14083_length_243_cov_13.614754_pilon to pilon.fasta [pilon] Writing NODE_14084_length_243_cov_13.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14084_length_243_cov_13.590164_pilon to pilon.fasta [pilon] Writing NODE_14085_length_243_cov_13.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14085_length_243_cov_13.590164_pilon to pilon.fasta [pilon] Writing NODE_14086_length_243_cov_13.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_14086_length_243_cov_13.565574_pilon to pilon.fasta [pilon] Writing NODE_14087_length_243_cov_13.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_14087_length_243_cov_13.565574_pilon to pilon.fasta [pilon] Writing NODE_14088_length_243_cov_13.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14088_length_243_cov_13.540984_pilon to pilon.fasta [pilon] Writing NODE_14089_length_243_cov_13.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14089_length_243_cov_13.532787_pilon to pilon.fasta [pilon] Writing NODE_14090_length_243_cov_13.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14090_length_243_cov_13.524590_pilon to pilon.fasta [pilon] Writing NODE_14091_length_243_cov_13.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14091_length_243_cov_13.524590_pilon to pilon.fasta [pilon] Writing NODE_14092_length_243_cov_13.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14092_length_243_cov_13.508197_pilon to pilon.fasta [pilon] Writing NODE_14093_length_243_cov_13.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14093_length_243_cov_13.500000_pilon to pilon.fasta [pilon] Writing NODE_14094_length_243_cov_13.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14094_length_243_cov_13.491803_pilon to pilon.fasta [pilon] Writing NODE_14095_length_243_cov_13.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14095_length_243_cov_13.491803_pilon to pilon.fasta [pilon] Writing NODE_14096_length_243_cov_13.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14096_length_243_cov_13.475410_pilon to pilon.fasta [pilon] Writing NODE_14097_length_243_cov_13.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14097_length_243_cov_13.475410_pilon to pilon.fasta [pilon] Writing NODE_14098_length_243_cov_13.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14098_length_243_cov_13.467213_pilon to pilon.fasta [pilon] Writing NODE_14099_length_243_cov_13.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14099_length_243_cov_13.467213_pilon to pilon.fasta [pilon] Writing NODE_14100_length_243_cov_13.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14100_length_243_cov_13.467213_pilon to pilon.fasta [pilon] Writing NODE_14101_length_243_cov_13.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14101_length_243_cov_13.459016_pilon to pilon.fasta [pilon] Writing NODE_14102_length_243_cov_13.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14102_length_243_cov_13.459016_pilon to pilon.fasta [pilon] Writing NODE_14103_length_243_cov_13.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14103_length_243_cov_13.450820_pilon to pilon.fasta [pilon] Writing NODE_14104_length_243_cov_13.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14104_length_243_cov_13.434426_pilon to pilon.fasta [pilon] Writing NODE_14105_length_243_cov_13.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14105_length_243_cov_13.434426_pilon to pilon.fasta [pilon] Writing NODE_14106_length_243_cov_13.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14106_length_243_cov_13.434426_pilon to pilon.fasta [pilon] Writing NODE_14107_length_243_cov_13.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14107_length_243_cov_13.426230_pilon to pilon.fasta [pilon] Writing NODE_14108_length_243_cov_13.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14108_length_243_cov_13.418033_pilon to pilon.fasta [pilon] Writing NODE_14109_length_243_cov_13.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14109_length_243_cov_13.409836_pilon to pilon.fasta [pilon] Writing NODE_14110_length_243_cov_13.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14110_length_243_cov_13.401639_pilon to pilon.fasta [pilon] Writing NODE_14111_length_243_cov_13.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14111_length_243_cov_13.401639_pilon to pilon.fasta [pilon] Writing NODE_14112_length_243_cov_13.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14112_length_243_cov_13.401639_pilon to pilon.fasta [pilon] Writing NODE_14113_length_243_cov_13.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_14113_length_243_cov_13.385246_pilon to pilon.fasta [pilon] Writing NODE_14114_length_243_cov_13.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_14114_length_243_cov_13.385246_pilon to pilon.fasta [pilon] Writing NODE_14115_length_243_cov_13.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14115_length_243_cov_13.377049_pilon to pilon.fasta [pilon] Writing NODE_14116_length_243_cov_13.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14116_length_243_cov_13.377049_pilon to pilon.fasta [pilon] Writing NODE_14117_length_243_cov_13.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14117_length_243_cov_13.368852_pilon to pilon.fasta [pilon] Writing NODE_14118_length_243_cov_13.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_14118_length_243_cov_13.344262_pilon to pilon.fasta [pilon] Writing NODE_14119_length_243_cov_13.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14119_length_243_cov_13.336066_pilon to pilon.fasta [pilon] Writing NODE_14120_length_243_cov_13.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14120_length_243_cov_13.327869_pilon to pilon.fasta [pilon] Writing NODE_14121_length_243_cov_13.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14121_length_243_cov_13.327869_pilon to pilon.fasta [pilon] Writing NODE_14122_length_243_cov_13.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14122_length_243_cov_13.319672_pilon to pilon.fasta [pilon] Writing NODE_14123_length_243_cov_13.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_14123_length_243_cov_13.311475_pilon to pilon.fasta [pilon] Writing NODE_14124_length_243_cov_13.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14124_length_243_cov_13.303279_pilon to pilon.fasta [pilon] Writing NODE_14125_length_243_cov_13.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14125_length_243_cov_13.303279_pilon to pilon.fasta [pilon] Writing NODE_14126_length_243_cov_13.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14126_length_243_cov_13.303279_pilon to pilon.fasta [pilon] Writing NODE_14127_length_243_cov_13.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14127_length_243_cov_13.295082_pilon to pilon.fasta [pilon] Writing NODE_14128_length_243_cov_13.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14128_length_243_cov_13.286885_pilon to pilon.fasta [pilon] Writing NODE_14129_length_243_cov_13.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14129_length_243_cov_13.286885_pilon to pilon.fasta [pilon] Writing NODE_14130_length_243_cov_13.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14130_length_243_cov_13.286885_pilon to pilon.fasta [pilon] Writing NODE_14131_length_243_cov_13.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14131_length_243_cov_13.278689_pilon to pilon.fasta [pilon] Writing NODE_14132_length_243_cov_13.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14132_length_243_cov_13.278689_pilon to pilon.fasta [pilon] Writing NODE_14133_length_243_cov_13.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14133_length_243_cov_13.270492_pilon to pilon.fasta [pilon] Writing NODE_14134_length_243_cov_13.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14134_length_243_cov_13.245902_pilon to pilon.fasta [pilon] Writing NODE_14135_length_243_cov_13.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14135_length_243_cov_13.245902_pilon to pilon.fasta [pilon] Writing NODE_14136_length_243_cov_13.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14136_length_243_cov_13.245902_pilon to pilon.fasta [pilon] Writing NODE_14137_length_243_cov_13.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14137_length_243_cov_13.229508_pilon to pilon.fasta [pilon] Writing NODE_14138_length_243_cov_13.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14138_length_243_cov_13.213115_pilon to pilon.fasta [pilon] Writing NODE_14139_length_243_cov_13.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14139_length_243_cov_13.204918_pilon to pilon.fasta [pilon] Writing NODE_14140_length_243_cov_13.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14140_length_243_cov_13.204918_pilon to pilon.fasta [pilon] Writing NODE_14141_length_243_cov_13.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14141_length_243_cov_13.204918_pilon to pilon.fasta [pilon] Writing NODE_14142_length_243_cov_13.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14142_length_243_cov_13.188525_pilon to pilon.fasta [pilon] Writing NODE_14143_length_243_cov_13.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14143_length_243_cov_13.188525_pilon to pilon.fasta [pilon] Writing NODE_14144_length_243_cov_13.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14144_length_243_cov_13.180328_pilon to pilon.fasta [pilon] Writing NODE_14145_length_243_cov_13.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14145_length_243_cov_13.172131_pilon to pilon.fasta [pilon] Writing NODE_14146_length_243_cov_13.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14146_length_243_cov_13.155738_pilon to pilon.fasta [pilon] Writing NODE_14147_length_243_cov_13.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14147_length_243_cov_13.139344_pilon to pilon.fasta [pilon] Writing NODE_14148_length_243_cov_13.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14148_length_243_cov_13.122951_pilon to pilon.fasta [pilon] Writing NODE_14149_length_243_cov_13.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14149_length_243_cov_13.114754_pilon to pilon.fasta [pilon] Writing NODE_14150_length_243_cov_13.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14150_length_243_cov_13.106557_pilon to pilon.fasta [pilon] Writing NODE_14151_length_243_cov_13.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14151_length_243_cov_13.098361_pilon to pilon.fasta [pilon] Writing NODE_14152_length_243_cov_13.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14152_length_243_cov_13.098361_pilon to pilon.fasta [pilon] Writing NODE_14153_length_243_cov_13.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14153_length_243_cov_13.098361_pilon to pilon.fasta [pilon] Writing NODE_14154_length_243_cov_13.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14154_length_243_cov_13.081967_pilon to pilon.fasta [pilon] Writing NODE_14155_length_243_cov_13.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14155_length_243_cov_13.073770_pilon to pilon.fasta [pilon] Writing NODE_14156_length_243_cov_13.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14156_length_243_cov_13.049180_pilon to pilon.fasta [pilon] Writing NODE_14157_length_243_cov_13.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14157_length_243_cov_13.032787_pilon to pilon.fasta [pilon] Writing NODE_14158_length_243_cov_13.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14158_length_243_cov_13.032787_pilon to pilon.fasta [pilon] Writing NODE_14159_length_243_cov_13.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14159_length_243_cov_13.016393_pilon to pilon.fasta [pilon] Writing NODE_14160_length_243_cov_13.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14160_length_243_cov_13.008197_pilon to pilon.fasta [pilon] Writing NODE_14161_length_243_cov_13.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14161_length_243_cov_13.000000_pilon to pilon.fasta [pilon] Writing NODE_14162_length_243_cov_12.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14162_length_243_cov_12.975410_pilon to pilon.fasta [pilon] Writing NODE_14163_length_243_cov_12.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14163_length_243_cov_12.975410_pilon to pilon.fasta [pilon] Writing NODE_14164_length_243_cov_12.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14164_length_243_cov_12.950820_pilon to pilon.fasta [pilon] Writing NODE_14165_length_243_cov_12.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14165_length_243_cov_12.942623_pilon to pilon.fasta [pilon] Writing NODE_14166_length_243_cov_12.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14166_length_243_cov_12.942623_pilon to pilon.fasta [pilon] Writing NODE_14167_length_243_cov_12.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14167_length_243_cov_12.934426_pilon to pilon.fasta [pilon] Writing NODE_14168_length_243_cov_12.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14168_length_243_cov_12.926230_pilon to pilon.fasta [pilon] Writing NODE_14169_length_243_cov_12.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14169_length_243_cov_12.909836_pilon to pilon.fasta [pilon] Writing NODE_14170_length_243_cov_12.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14170_length_243_cov_12.909836_pilon to pilon.fasta [pilon] Writing NODE_14171_length_243_cov_12.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14171_length_243_cov_12.901639_pilon to pilon.fasta [pilon] Writing NODE_14172_length_243_cov_12.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14172_length_243_cov_12.893443_pilon to pilon.fasta [pilon] Writing NODE_14173_length_243_cov_12.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14173_length_243_cov_12.868852_pilon to pilon.fasta [pilon] Writing NODE_14174_length_243_cov_12.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14174_length_243_cov_12.868852_pilon to pilon.fasta [pilon] Writing NODE_14175_length_243_cov_12.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14175_length_243_cov_12.860656_pilon to pilon.fasta [pilon] Writing NODE_14176_length_243_cov_12.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14176_length_243_cov_12.836066_pilon to pilon.fasta [pilon] Writing NODE_14177_length_243_cov_12.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14177_length_243_cov_12.803279_pilon to pilon.fasta [pilon] Writing NODE_14178_length_243_cov_12.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14178_length_243_cov_12.778689_pilon to pilon.fasta [pilon] Writing NODE_14179_length_243_cov_12.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14179_length_243_cov_12.778689_pilon to pilon.fasta [pilon] Writing NODE_14180_length_243_cov_12.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14180_length_243_cov_12.770492_pilon to pilon.fasta [pilon] Writing NODE_14181_length_243_cov_12.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14181_length_243_cov_12.770492_pilon to pilon.fasta [pilon] Writing NODE_14182_length_243_cov_12.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14182_length_243_cov_12.770492_pilon to pilon.fasta [pilon] Writing NODE_14183_length_243_cov_12.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14183_length_243_cov_12.762295_pilon to pilon.fasta [pilon] Writing NODE_14184_length_243_cov_12.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14184_length_243_cov_12.754098_pilon to pilon.fasta [pilon] Writing NODE_14185_length_243_cov_12.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14185_length_243_cov_12.745902_pilon to pilon.fasta [pilon] Writing NODE_14186_length_243_cov_12.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14186_length_243_cov_12.721311_pilon to pilon.fasta [pilon] Writing NODE_14187_length_243_cov_12.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14187_length_243_cov_12.721311_pilon to pilon.fasta [pilon] Writing NODE_14188_length_243_cov_12.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14188_length_243_cov_12.713115_pilon to pilon.fasta [pilon] Writing NODE_14189_length_243_cov_12.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14189_length_243_cov_12.696721_pilon to pilon.fasta [pilon] Writing NODE_14190_length_243_cov_12.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14190_length_243_cov_12.696721_pilon to pilon.fasta [pilon] Writing NODE_14191_length_243_cov_12.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14191_length_243_cov_12.696721_pilon to pilon.fasta [pilon] Writing NODE_14192_length_243_cov_12.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14192_length_243_cov_12.672131_pilon to pilon.fasta [pilon] Writing NODE_14193_length_243_cov_12.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14193_length_243_cov_12.663934_pilon to pilon.fasta [pilon] Writing NODE_14194_length_243_cov_12.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14194_length_243_cov_12.663934_pilon to pilon.fasta [pilon] Writing NODE_14195_length_243_cov_12.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14195_length_243_cov_12.663934_pilon to pilon.fasta [pilon] Writing NODE_14196_length_243_cov_12.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14196_length_243_cov_12.647541_pilon to pilon.fasta [pilon] Writing NODE_14197_length_243_cov_12.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14197_length_243_cov_12.631148_pilon to pilon.fasta [pilon] Writing NODE_14198_length_243_cov_12.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14198_length_243_cov_12.631148_pilon to pilon.fasta [pilon] Writing NODE_14199_length_243_cov_12.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14199_length_243_cov_12.590164_pilon to pilon.fasta [pilon] Writing NODE_14200_length_243_cov_12.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14200_length_243_cov_12.590164_pilon to pilon.fasta [pilon] Writing NODE_14201_length_243_cov_12.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14201_length_243_cov_12.590164_pilon to pilon.fasta [pilon] Writing NODE_14202_length_243_cov_12.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14202_length_243_cov_12.590164_pilon to pilon.fasta [pilon] Writing NODE_14203_length_243_cov_12.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14203_length_243_cov_12.581967_pilon to pilon.fasta [pilon] Writing NODE_14204_length_243_cov_12.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14204_length_243_cov_12.581967_pilon to pilon.fasta [pilon] Writing NODE_14205_length_243_cov_12.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14205_length_243_cov_12.573770_pilon to pilon.fasta [pilon] Writing NODE_14206_length_243_cov_12.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14206_length_243_cov_12.573770_pilon to pilon.fasta [pilon] Writing NODE_14207_length_243_cov_12.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14207_length_243_cov_12.540984_pilon to pilon.fasta [pilon] Writing NODE_14208_length_243_cov_12.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14208_length_243_cov_12.540984_pilon to pilon.fasta [pilon] Writing NODE_14209_length_243_cov_12.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14209_length_243_cov_12.532787_pilon to pilon.fasta [pilon] Writing NODE_14210_length_243_cov_12.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14210_length_243_cov_12.532787_pilon to pilon.fasta [pilon] Writing NODE_14211_length_243_cov_12.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14211_length_243_cov_12.524590_pilon to pilon.fasta [pilon] Writing NODE_14212_length_243_cov_12.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14212_length_243_cov_12.516393_pilon to pilon.fasta [pilon] Writing NODE_14213_length_243_cov_12.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14213_length_243_cov_12.516393_pilon to pilon.fasta [pilon] Writing NODE_14214_length_243_cov_12.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14214_length_243_cov_12.500000_pilon to pilon.fasta [pilon] Writing NODE_14215_length_243_cov_12.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14215_length_243_cov_12.491803_pilon to pilon.fasta [pilon] Writing NODE_14216_length_243_cov_12.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14216_length_243_cov_12.491803_pilon to pilon.fasta [pilon] Writing NODE_14217_length_243_cov_12.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14217_length_243_cov_12.467213_pilon to pilon.fasta [pilon] Writing NODE_14218_length_243_cov_12.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14218_length_243_cov_12.467213_pilon to pilon.fasta [pilon] Writing NODE_14219_length_243_cov_12.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14219_length_243_cov_12.442623_pilon to pilon.fasta [pilon] Writing NODE_14220_length_243_cov_12.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14220_length_243_cov_12.434426_pilon to pilon.fasta [pilon] Writing NODE_14221_length_243_cov_12.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14221_length_243_cov_12.401639_pilon to pilon.fasta [pilon] Writing NODE_14222_length_243_cov_12.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14222_length_243_cov_12.393443_pilon to pilon.fasta [pilon] Writing NODE_14223_length_243_cov_12.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14223_length_243_cov_12.393443_pilon to pilon.fasta [pilon] Writing NODE_14224_length_243_cov_12.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_14224_length_243_cov_12.385246_pilon to pilon.fasta [pilon] Writing NODE_14225_length_243_cov_12.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14225_length_243_cov_12.377049_pilon to pilon.fasta [pilon] Writing NODE_14226_length_243_cov_12.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14226_length_243_cov_12.368852_pilon to pilon.fasta [pilon] Writing NODE_14227_length_243_cov_12.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14227_length_243_cov_12.368852_pilon to pilon.fasta [pilon] Writing NODE_14228_length_243_cov_12.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14228_length_243_cov_12.360656_pilon to pilon.fasta [pilon] Writing NODE_14229_length_243_cov_12.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14229_length_243_cov_12.360656_pilon to pilon.fasta [pilon] Writing NODE_14230_length_243_cov_12.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14230_length_243_cov_12.352459_pilon to pilon.fasta [pilon] Writing NODE_14231_length_243_cov_12.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14231_length_243_cov_12.352459_pilon to pilon.fasta [pilon] Writing NODE_14232_length_243_cov_12.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_14232_length_243_cov_12.344262_pilon to pilon.fasta [pilon] Writing NODE_14233_length_243_cov_12.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_14233_length_243_cov_12.344262_pilon to pilon.fasta [pilon] Writing NODE_14234_length_243_cov_12.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_14234_length_243_cov_12.344262_pilon to pilon.fasta [pilon] Writing NODE_14235_length_243_cov_12.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14235_length_243_cov_12.336066_pilon to pilon.fasta [pilon] Writing NODE_14236_length_243_cov_12.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14236_length_243_cov_12.327869_pilon to pilon.fasta [pilon] Writing NODE_14237_length_243_cov_12.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14237_length_243_cov_12.327869_pilon to pilon.fasta [pilon] Writing NODE_14238_length_243_cov_12.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14238_length_243_cov_12.327869_pilon to pilon.fasta [pilon] Writing NODE_14239_length_243_cov_12.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14239_length_243_cov_12.319672_pilon to pilon.fasta [pilon] Writing NODE_14240_length_243_cov_12.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14240_length_243_cov_12.319672_pilon to pilon.fasta [pilon] Writing NODE_14241_length_243_cov_12.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14241_length_243_cov_12.295082_pilon to pilon.fasta [pilon] Writing NODE_14242_length_243_cov_12.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14242_length_243_cov_12.286885_pilon to pilon.fasta [pilon] Writing NODE_14243_length_243_cov_12.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14243_length_243_cov_12.286885_pilon to pilon.fasta [pilon] Writing NODE_14244_length_243_cov_12.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14244_length_243_cov_12.278689_pilon to pilon.fasta [pilon] Writing NODE_14245_length_243_cov_12.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14245_length_243_cov_12.270492_pilon to pilon.fasta [pilon] Writing NODE_14246_length_243_cov_12.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14246_length_243_cov_12.270492_pilon to pilon.fasta [pilon] Writing NODE_14247_length_243_cov_12.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14247_length_243_cov_12.270492_pilon to pilon.fasta [pilon] Writing NODE_14248_length_243_cov_12.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14248_length_243_cov_12.262295_pilon to pilon.fasta [pilon] Writing NODE_14249_length_243_cov_12.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14249_length_243_cov_12.254098_pilon to pilon.fasta [pilon] Writing NODE_14250_length_243_cov_12.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14250_length_243_cov_12.254098_pilon to pilon.fasta [pilon] Writing NODE_14251_length_243_cov_12.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14251_length_243_cov_12.254098_pilon to pilon.fasta [pilon] Writing NODE_14252_length_243_cov_12.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14252_length_243_cov_12.237705_pilon to pilon.fasta [pilon] Writing NODE_14253_length_243_cov_12.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14253_length_243_cov_12.229508_pilon to pilon.fasta [pilon] Writing NODE_14254_length_243_cov_12.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14254_length_243_cov_12.229508_pilon to pilon.fasta [pilon] Writing NODE_14255_length_243_cov_12.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14255_length_243_cov_12.221311_pilon to pilon.fasta [pilon] Writing NODE_14256_length_243_cov_12.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14256_length_243_cov_12.221311_pilon to pilon.fasta [pilon] Writing NODE_14257_length_243_cov_12.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14257_length_243_cov_12.213115_pilon to pilon.fasta [pilon] Writing NODE_14258_length_243_cov_12.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14258_length_243_cov_12.172131_pilon to pilon.fasta [pilon] Writing NODE_14259_length_243_cov_12.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14259_length_243_cov_12.163934_pilon to pilon.fasta [pilon] Writing NODE_14260_length_243_cov_12.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14260_length_243_cov_12.163934_pilon to pilon.fasta [pilon] Writing NODE_14261_length_243_cov_12.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14261_length_243_cov_12.147541_pilon to pilon.fasta [pilon] Writing NODE_14262_length_243_cov_12.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14262_length_243_cov_12.131148_pilon to pilon.fasta [pilon] Writing NODE_14263_length_243_cov_12.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14263_length_243_cov_12.106557_pilon to pilon.fasta [pilon] Writing NODE_14264_length_243_cov_12.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14264_length_243_cov_12.098361_pilon to pilon.fasta [pilon] Writing NODE_14265_length_243_cov_12.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14265_length_243_cov_12.098361_pilon to pilon.fasta [pilon] Writing NODE_14266_length_243_cov_12.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14266_length_243_cov_12.090164_pilon to pilon.fasta [pilon] Writing NODE_14267_length_243_cov_12.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14267_length_243_cov_12.090164_pilon to pilon.fasta [pilon] Writing NODE_14268_length_243_cov_12.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14268_length_243_cov_12.090164_pilon to pilon.fasta [pilon] Writing NODE_14269_length_243_cov_12.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14269_length_243_cov_12.073770_pilon to pilon.fasta [pilon] Writing NODE_14270_length_243_cov_12.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14270_length_243_cov_12.057377_pilon to pilon.fasta [pilon] Writing NODE_14271_length_243_cov_12.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14271_length_243_cov_12.057377_pilon to pilon.fasta [pilon] Writing NODE_14272_length_243_cov_12.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14272_length_243_cov_12.057377_pilon to pilon.fasta [pilon] Writing NODE_14273_length_243_cov_12.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14273_length_243_cov_12.049180_pilon to pilon.fasta [pilon] Writing NODE_14274_length_243_cov_12.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14274_length_243_cov_12.049180_pilon to pilon.fasta [pilon] Writing NODE_14275_length_243_cov_12.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14275_length_243_cov_12.049180_pilon to pilon.fasta [pilon] Writing NODE_14276_length_243_cov_12.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14276_length_243_cov_12.040984_pilon to pilon.fasta [pilon] Writing NODE_14277_length_243_cov_12.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14277_length_243_cov_12.024590_pilon to pilon.fasta [pilon] Writing NODE_14278_length_243_cov_12.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14278_length_243_cov_12.016393_pilon to pilon.fasta [pilon] Writing NODE_14279_length_243_cov_12.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14279_length_243_cov_12.000000_pilon to pilon.fasta [pilon] Writing NODE_14280_length_243_cov_12.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14280_length_243_cov_12.000000_pilon to pilon.fasta [pilon] Writing NODE_14281_length_243_cov_12.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14281_length_243_cov_12.000000_pilon to pilon.fasta [pilon] Writing NODE_14282_length_243_cov_11.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14282_length_243_cov_11.983607_pilon to pilon.fasta [pilon] Writing NODE_14283_length_243_cov_11.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14283_length_243_cov_11.959016_pilon to pilon.fasta [pilon] Writing NODE_14284_length_243_cov_11.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14284_length_243_cov_11.959016_pilon to pilon.fasta [pilon] Writing NODE_14285_length_243_cov_11.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14285_length_243_cov_11.959016_pilon to pilon.fasta [pilon] Writing NODE_14286_length_243_cov_11.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14286_length_243_cov_11.950820_pilon to pilon.fasta [pilon] Writing NODE_14287_length_243_cov_11.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14287_length_243_cov_11.942623_pilon to pilon.fasta [pilon] Writing NODE_14288_length_243_cov_11.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14288_length_243_cov_11.934426_pilon to pilon.fasta [pilon] Writing NODE_14289_length_243_cov_11.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14289_length_243_cov_11.926230_pilon to pilon.fasta [pilon] Writing NODE_14290_length_243_cov_11.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14290_length_243_cov_11.926230_pilon to pilon.fasta [pilon] Writing NODE_14291_length_243_cov_11.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14291_length_243_cov_11.918033_pilon to pilon.fasta [pilon] Writing NODE_14292_length_243_cov_11.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14292_length_243_cov_11.918033_pilon to pilon.fasta [pilon] Writing NODE_14293_length_243_cov_11.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14293_length_243_cov_11.901639_pilon to pilon.fasta [pilon] Writing NODE_14294_length_243_cov_11.885246:1-243 changes to pilon.changes [pilon] Writing updated NODE_14294_length_243_cov_11.885246_pilon to pilon.fasta [pilon] Writing NODE_14295_length_243_cov_11.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14295_length_243_cov_11.868852_pilon to pilon.fasta [pilon] Writing NODE_14296_length_243_cov_11.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14296_length_243_cov_11.860656_pilon to pilon.fasta [pilon] Writing NODE_14297_length_243_cov_11.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14297_length_243_cov_11.852459_pilon to pilon.fasta [pilon] Writing NODE_14298_length_243_cov_11.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14298_length_243_cov_11.852459_pilon to pilon.fasta [pilon] Writing NODE_14299_length_243_cov_11.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14299_length_243_cov_11.852459_pilon to pilon.fasta [pilon] Writing NODE_14300_length_243_cov_11.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14300_length_243_cov_11.852459_pilon to pilon.fasta [pilon] Writing NODE_14301_length_243_cov_11.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14301_length_243_cov_11.827869_pilon to pilon.fasta [pilon] Writing NODE_14302_length_243_cov_11.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14302_length_243_cov_11.819672_pilon to pilon.fasta [pilon] Writing NODE_14303_length_243_cov_11.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14303_length_243_cov_11.819672_pilon to pilon.fasta [pilon] Writing NODE_14304_length_243_cov_11.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_14304_length_243_cov_11.811475_pilon to pilon.fasta [pilon] Writing NODE_14305_length_243_cov_11.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14305_length_243_cov_11.795082_pilon to pilon.fasta [pilon] Writing NODE_14306_length_243_cov_11.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14306_length_243_cov_11.795082_pilon to pilon.fasta [pilon] Writing NODE_14307_length_243_cov_11.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14307_length_243_cov_11.786885_pilon to pilon.fasta [pilon] Writing NODE_14308_length_243_cov_11.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14308_length_243_cov_11.786885_pilon to pilon.fasta [pilon] Writing NODE_14309_length_243_cov_11.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14309_length_243_cov_11.786885_pilon to pilon.fasta [pilon] Writing NODE_14310_length_243_cov_11.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14310_length_243_cov_11.786885_pilon to pilon.fasta [pilon] Writing NODE_14311_length_243_cov_11.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14311_length_243_cov_11.778689_pilon to pilon.fasta [pilon] Writing NODE_14312_length_243_cov_11.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14312_length_243_cov_11.770492_pilon to pilon.fasta [pilon] Writing NODE_14313_length_243_cov_11.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14313_length_243_cov_11.770492_pilon to pilon.fasta [pilon] Writing NODE_14314_length_243_cov_11.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14314_length_243_cov_11.754098_pilon to pilon.fasta [pilon] Writing NODE_14315_length_243_cov_11.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14315_length_243_cov_11.729508_pilon to pilon.fasta [pilon] Writing NODE_14316_length_243_cov_11.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14316_length_243_cov_11.729508_pilon to pilon.fasta [pilon] Writing NODE_14317_length_243_cov_11.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14317_length_243_cov_11.713115_pilon to pilon.fasta [pilon] Writing NODE_14318_length_243_cov_11.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14318_length_243_cov_11.704918_pilon to pilon.fasta [pilon] Writing NODE_14319_length_243_cov_11.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14319_length_243_cov_11.696721_pilon to pilon.fasta [pilon] Writing NODE_14320_length_243_cov_11.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14320_length_243_cov_11.696721_pilon to pilon.fasta [pilon] Writing NODE_14321_length_243_cov_11.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14321_length_243_cov_11.688525_pilon to pilon.fasta [pilon] Writing NODE_14322_length_243_cov_11.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14322_length_243_cov_11.688525_pilon to pilon.fasta [pilon] Writing NODE_14323_length_243_cov_11.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14323_length_243_cov_11.688525_pilon to pilon.fasta [pilon] Writing NODE_14324_length_243_cov_11.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14324_length_243_cov_11.680328_pilon to pilon.fasta [pilon] Writing NODE_14325_length_243_cov_11.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14325_length_243_cov_11.672131_pilon to pilon.fasta [pilon] Writing NODE_14326_length_243_cov_11.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14326_length_243_cov_11.647541_pilon to pilon.fasta [pilon] Writing NODE_14327_length_243_cov_11.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14327_length_243_cov_11.647541_pilon to pilon.fasta [pilon] Writing NODE_14328_length_243_cov_11.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14328_length_243_cov_11.647541_pilon to pilon.fasta [pilon] Writing NODE_14329_length_243_cov_11.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14329_length_243_cov_11.639344_pilon to pilon.fasta [pilon] Writing NODE_14330_length_243_cov_11.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14330_length_243_cov_11.639344_pilon to pilon.fasta [pilon] Writing NODE_14331_length_243_cov_11.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14331_length_243_cov_11.614754_pilon to pilon.fasta [pilon] Writing NODE_14332_length_243_cov_11.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14332_length_243_cov_11.614754_pilon to pilon.fasta [pilon] Writing NODE_14333_length_243_cov_11.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14333_length_243_cov_11.598361_pilon to pilon.fasta [pilon] Writing NODE_14334_length_243_cov_11.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14334_length_243_cov_11.590164_pilon to pilon.fasta [pilon] Writing NODE_14335_length_243_cov_11.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14335_length_243_cov_11.590164_pilon to pilon.fasta [pilon] Writing NODE_14336_length_243_cov_11.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14336_length_243_cov_11.573770_pilon to pilon.fasta [pilon] Writing NODE_14337_length_243_cov_11.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14337_length_243_cov_11.557377_pilon to pilon.fasta [pilon] Writing NODE_14338_length_243_cov_11.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14338_length_243_cov_11.557377_pilon to pilon.fasta [pilon] Writing NODE_14339_length_243_cov_11.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14339_length_243_cov_11.540984_pilon to pilon.fasta [pilon] Writing NODE_14340_length_243_cov_11.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14340_length_243_cov_11.532787_pilon to pilon.fasta [pilon] Writing NODE_14341_length_243_cov_11.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14341_length_243_cov_11.524590_pilon to pilon.fasta [pilon] Writing NODE_14342_length_243_cov_11.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14342_length_243_cov_11.516393_pilon to pilon.fasta [pilon] Writing NODE_14343_length_243_cov_11.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14343_length_243_cov_11.516393_pilon to pilon.fasta [pilon] Writing NODE_14344_length_243_cov_11.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14344_length_243_cov_11.508197_pilon to pilon.fasta [pilon] Writing NODE_14345_length_243_cov_11.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14345_length_243_cov_11.500000_pilon to pilon.fasta [pilon] Writing NODE_14346_length_243_cov_11.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14346_length_243_cov_11.483607_pilon to pilon.fasta [pilon] Writing NODE_14347_length_243_cov_11.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14347_length_243_cov_11.483607_pilon to pilon.fasta [pilon] Writing NODE_14348_length_243_cov_11.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14348_length_243_cov_11.483607_pilon to pilon.fasta [pilon] Writing NODE_14349_length_243_cov_11.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14349_length_243_cov_11.475410_pilon to pilon.fasta [pilon] Writing NODE_14350_length_243_cov_11.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14350_length_243_cov_11.459016_pilon to pilon.fasta [pilon] Writing NODE_14351_length_243_cov_11.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14351_length_243_cov_11.450820_pilon to pilon.fasta [pilon] Writing NODE_14352_length_243_cov_11.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14352_length_243_cov_11.450820_pilon to pilon.fasta [pilon] Writing NODE_14353_length_243_cov_11.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14353_length_243_cov_11.442623_pilon to pilon.fasta [pilon] Writing NODE_14354_length_243_cov_11.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14354_length_243_cov_11.426230_pilon to pilon.fasta [pilon] Writing NODE_14355_length_243_cov_11.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14355_length_243_cov_11.409836_pilon to pilon.fasta [pilon] Writing NODE_14356_length_243_cov_11.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14356_length_243_cov_11.401639_pilon to pilon.fasta [pilon] Writing NODE_14357_length_243_cov_11.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14357_length_243_cov_11.393443_pilon to pilon.fasta [pilon] Writing NODE_14358_length_243_cov_11.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14358_length_243_cov_11.393443_pilon to pilon.fasta [pilon] Writing NODE_14359_length_243_cov_11.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14359_length_243_cov_11.377049_pilon to pilon.fasta [pilon] Writing NODE_14360_length_243_cov_11.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14360_length_243_cov_11.377049_pilon to pilon.fasta [pilon] Writing NODE_14361_length_243_cov_11.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14361_length_243_cov_11.352459_pilon to pilon.fasta [pilon] Writing NODE_14362_length_243_cov_11.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14362_length_243_cov_11.327869_pilon to pilon.fasta [pilon] Writing NODE_14363_length_243_cov_11.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14363_length_243_cov_11.327869_pilon to pilon.fasta [pilon] Writing NODE_14364_length_243_cov_11.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14364_length_243_cov_11.327869_pilon to pilon.fasta [pilon] Writing NODE_14365_length_243_cov_11.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14365_length_243_cov_11.327869_pilon to pilon.fasta [pilon] Writing NODE_14366_length_243_cov_11.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14366_length_243_cov_11.319672_pilon to pilon.fasta [pilon] Writing NODE_14367_length_243_cov_11.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14367_length_243_cov_11.319672_pilon to pilon.fasta [pilon] Writing NODE_14368_length_243_cov_11.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14368_length_243_cov_11.319672_pilon to pilon.fasta [pilon] Writing NODE_14369_length_243_cov_11.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_14369_length_243_cov_11.311475_pilon to pilon.fasta [pilon] Writing NODE_14370_length_243_cov_11.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14370_length_243_cov_11.286885_pilon to pilon.fasta [pilon] Writing NODE_14371_length_243_cov_11.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14371_length_243_cov_11.278689_pilon to pilon.fasta [pilon] Writing NODE_14372_length_243_cov_11.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14372_length_243_cov_11.270492_pilon to pilon.fasta [pilon] Writing NODE_14373_length_243_cov_11.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14373_length_243_cov_11.262295_pilon to pilon.fasta [pilon] Writing NODE_14374_length_243_cov_11.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14374_length_243_cov_11.254098_pilon to pilon.fasta [pilon] Writing NODE_14375_length_243_cov_11.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14375_length_243_cov_11.245902_pilon to pilon.fasta [pilon] Writing NODE_14376_length_243_cov_11.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14376_length_243_cov_11.245902_pilon to pilon.fasta [pilon] Writing NODE_14377_length_243_cov_11.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14377_length_243_cov_11.237705_pilon to pilon.fasta [pilon] Writing NODE_14378_length_243_cov_11.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14378_length_243_cov_11.229508_pilon to pilon.fasta [pilon] Writing NODE_14379_length_243_cov_11.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14379_length_243_cov_11.229508_pilon to pilon.fasta [pilon] Writing NODE_14380_length_243_cov_11.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14380_length_243_cov_11.221311_pilon to pilon.fasta [pilon] Writing NODE_14381_length_243_cov_11.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14381_length_243_cov_11.213115_pilon to pilon.fasta [pilon] Writing NODE_14382_length_243_cov_11.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14382_length_243_cov_11.188525_pilon to pilon.fasta [pilon] Writing NODE_14383_length_243_cov_11.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14383_length_243_cov_11.180328_pilon to pilon.fasta [pilon] Writing NODE_14384_length_243_cov_11.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14384_length_243_cov_11.180328_pilon to pilon.fasta [pilon] Writing NODE_14385_length_243_cov_11.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14385_length_243_cov_11.172131_pilon to pilon.fasta [pilon] Writing NODE_14386_length_243_cov_11.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14386_length_243_cov_11.172131_pilon to pilon.fasta [pilon] Writing NODE_14387_length_243_cov_11.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14387_length_243_cov_11.155738_pilon to pilon.fasta [pilon] Writing NODE_14388_length_243_cov_11.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14388_length_243_cov_11.155738_pilon to pilon.fasta [pilon] Writing NODE_14389_length_243_cov_11.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14389_length_243_cov_11.147541_pilon to pilon.fasta [pilon] Writing NODE_14390_length_243_cov_11.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14390_length_243_cov_11.131148_pilon to pilon.fasta [pilon] Writing NODE_14391_length_243_cov_11.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14391_length_243_cov_11.131148_pilon to pilon.fasta [pilon] Writing NODE_14392_length_243_cov_11.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14392_length_243_cov_11.122951_pilon to pilon.fasta [pilon] Writing NODE_14393_length_243_cov_11.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14393_length_243_cov_11.114754_pilon to pilon.fasta [pilon] Writing NODE_14394_length_243_cov_11.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14394_length_243_cov_11.106557_pilon to pilon.fasta [pilon] Writing NODE_14395_length_243_cov_11.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14395_length_243_cov_11.098361_pilon to pilon.fasta [pilon] Writing NODE_14396_length_243_cov_11.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14396_length_243_cov_11.090164_pilon to pilon.fasta [pilon] Writing NODE_14397_length_243_cov_11.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14397_length_243_cov_11.090164_pilon to pilon.fasta [pilon] Writing NODE_14398_length_243_cov_11.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14398_length_243_cov_11.081967_pilon to pilon.fasta [pilon] Writing NODE_14399_length_243_cov_11.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14399_length_243_cov_11.081967_pilon to pilon.fasta [pilon] Writing NODE_14400_length_243_cov_11.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14400_length_243_cov_11.081967_pilon to pilon.fasta [pilon] Writing NODE_14401_length_243_cov_11.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14401_length_243_cov_11.073770_pilon to pilon.fasta [pilon] Writing NODE_14402_length_243_cov_11.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14402_length_243_cov_11.073770_pilon to pilon.fasta [pilon] Writing NODE_14403_length_243_cov_11.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14403_length_243_cov_11.049180_pilon to pilon.fasta [pilon] Writing NODE_14404_length_243_cov_11.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14404_length_243_cov_11.049180_pilon to pilon.fasta [pilon] Writing NODE_14405_length_243_cov_11.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14405_length_243_cov_11.049180_pilon to pilon.fasta [pilon] Writing NODE_14406_length_243_cov_11.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14406_length_243_cov_11.032787_pilon to pilon.fasta [pilon] Writing NODE_14407_length_243_cov_11.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14407_length_243_cov_11.024590_pilon to pilon.fasta [pilon] Writing NODE_14408_length_243_cov_11.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14408_length_243_cov_11.024590_pilon to pilon.fasta [pilon] Writing NODE_14409_length_243_cov_11.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14409_length_243_cov_11.016393_pilon to pilon.fasta [pilon] Writing NODE_14410_length_243_cov_11.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14410_length_243_cov_11.008197_pilon to pilon.fasta [pilon] Writing NODE_14411_length_243_cov_11.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14411_length_243_cov_11.000000_pilon to pilon.fasta [pilon] Writing NODE_14412_length_243_cov_10.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14412_length_243_cov_10.991803_pilon to pilon.fasta [pilon] Writing NODE_14413_length_243_cov_10.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14413_length_243_cov_10.959016_pilon to pilon.fasta [pilon] Writing NODE_14414_length_243_cov_10.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14414_length_243_cov_10.942623_pilon to pilon.fasta [pilon] Writing NODE_14415_length_243_cov_10.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14415_length_243_cov_10.934426_pilon to pilon.fasta [pilon] Writing NODE_14416_length_243_cov_10.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14416_length_243_cov_10.926230_pilon to pilon.fasta [pilon] Writing NODE_14417_length_243_cov_10.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14417_length_243_cov_10.918033_pilon to pilon.fasta [pilon] Writing NODE_14418_length_243_cov_10.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14418_length_243_cov_10.909836_pilon to pilon.fasta [pilon] Writing NODE_14419_length_243_cov_10.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14419_length_243_cov_10.909836_pilon to pilon.fasta [pilon] Writing NODE_14420_length_243_cov_10.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14420_length_243_cov_10.909836_pilon to pilon.fasta [pilon] Writing NODE_14421_length_243_cov_10.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14421_length_243_cov_10.909836_pilon to pilon.fasta [pilon] Writing NODE_14422_length_243_cov_10.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14422_length_243_cov_10.901639_pilon to pilon.fasta [pilon] Writing NODE_14423_length_243_cov_10.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14423_length_243_cov_10.901639_pilon to pilon.fasta [pilon] Writing NODE_14424_length_243_cov_10.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14424_length_243_cov_10.877049_pilon to pilon.fasta [pilon] Writing NODE_14425_length_243_cov_10.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14425_length_243_cov_10.877049_pilon to pilon.fasta [pilon] Writing NODE_14426_length_243_cov_10.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14426_length_243_cov_10.860656_pilon to pilon.fasta [pilon] Writing NODE_14427_length_243_cov_10.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14427_length_243_cov_10.852459_pilon to pilon.fasta [pilon] Writing NODE_14428_length_243_cov_10.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14428_length_243_cov_10.836066_pilon to pilon.fasta [pilon] Writing NODE_14429_length_243_cov_10.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14429_length_243_cov_10.827869_pilon to pilon.fasta [pilon] Writing NODE_14430_length_243_cov_10.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14430_length_243_cov_10.819672_pilon to pilon.fasta [pilon] Writing NODE_14431_length_243_cov_10.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_14431_length_243_cov_10.811475_pilon to pilon.fasta [pilon] Writing NODE_14432_length_243_cov_10.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14432_length_243_cov_10.803279_pilon to pilon.fasta [pilon] Writing NODE_14433_length_243_cov_10.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14433_length_243_cov_10.786885_pilon to pilon.fasta [pilon] Writing NODE_14434_length_243_cov_10.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14434_length_243_cov_10.786885_pilon to pilon.fasta [pilon] Writing NODE_14435_length_243_cov_10.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14435_length_243_cov_10.786885_pilon to pilon.fasta [pilon] Writing NODE_14436_length_243_cov_10.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14436_length_243_cov_10.778689_pilon to pilon.fasta [pilon] Writing NODE_14437_length_243_cov_10.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14437_length_243_cov_10.778689_pilon to pilon.fasta [pilon] Writing NODE_14438_length_243_cov_10.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14438_length_243_cov_10.754098_pilon to pilon.fasta [pilon] Writing NODE_14439_length_243_cov_10.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14439_length_243_cov_10.737705_pilon to pilon.fasta [pilon] Writing NODE_14440_length_243_cov_10.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14440_length_243_cov_10.737705_pilon to pilon.fasta [pilon] Writing NODE_14441_length_243_cov_10.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14441_length_243_cov_10.729508_pilon to pilon.fasta [pilon] Writing NODE_14442_length_243_cov_10.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14442_length_243_cov_10.721311_pilon to pilon.fasta [pilon] Writing NODE_14443_length_243_cov_10.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14443_length_243_cov_10.721311_pilon to pilon.fasta [pilon] Writing NODE_14444_length_243_cov_10.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14444_length_243_cov_10.721311_pilon to pilon.fasta [pilon] Writing NODE_14445_length_243_cov_10.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14445_length_243_cov_10.713115_pilon to pilon.fasta [pilon] Writing NODE_14446_length_243_cov_10.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14446_length_243_cov_10.713115_pilon to pilon.fasta [pilon] Writing NODE_14447_length_243_cov_10.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14447_length_243_cov_10.704918_pilon to pilon.fasta [pilon] Writing NODE_14448_length_243_cov_10.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14448_length_243_cov_10.696721_pilon to pilon.fasta [pilon] Writing NODE_14449_length_243_cov_10.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14449_length_243_cov_10.688525_pilon to pilon.fasta [pilon] Writing NODE_14450_length_243_cov_10.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14450_length_243_cov_10.688525_pilon to pilon.fasta [pilon] Writing NODE_14451_length_243_cov_10.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14451_length_243_cov_10.672131_pilon to pilon.fasta [pilon] Writing NODE_14452_length_243_cov_10.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14452_length_243_cov_10.672131_pilon to pilon.fasta [pilon] Writing NODE_14453_length_243_cov_10.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14453_length_243_cov_10.663934_pilon to pilon.fasta [pilon] Writing NODE_14454_length_243_cov_10.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14454_length_243_cov_10.639344_pilon to pilon.fasta [pilon] Writing NODE_14455_length_243_cov_10.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14455_length_243_cov_10.639344_pilon to pilon.fasta [pilon] Writing NODE_14456_length_243_cov_10.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14456_length_243_cov_10.631148_pilon to pilon.fasta [pilon] Writing NODE_14457_length_243_cov_10.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14457_length_243_cov_10.631148_pilon to pilon.fasta [pilon] Writing NODE_14458_length_243_cov_10.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14458_length_243_cov_10.622951_pilon to pilon.fasta [pilon] Writing NODE_14459_length_243_cov_10.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14459_length_243_cov_10.622951_pilon to pilon.fasta [pilon] Writing NODE_14460_length_243_cov_10.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14460_length_243_cov_10.622951_pilon to pilon.fasta [pilon] Writing NODE_14461_length_243_cov_10.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14461_length_243_cov_10.606557_pilon to pilon.fasta [pilon] Writing NODE_14462_length_243_cov_10.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14462_length_243_cov_10.590164_pilon to pilon.fasta [pilon] Writing NODE_14463_length_243_cov_10.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14463_length_243_cov_10.581967_pilon to pilon.fasta [pilon] Writing NODE_14464_length_243_cov_10.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14464_length_243_cov_10.549180_pilon to pilon.fasta [pilon] Writing NODE_14465_length_243_cov_10.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14465_length_243_cov_10.540984_pilon to pilon.fasta [pilon] Writing NODE_14466_length_243_cov_10.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14466_length_243_cov_10.532787_pilon to pilon.fasta [pilon] Writing NODE_14467_length_243_cov_10.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14467_length_243_cov_10.524590_pilon to pilon.fasta [pilon] Writing NODE_14468_length_243_cov_10.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14468_length_243_cov_10.516393_pilon to pilon.fasta [pilon] Writing NODE_14469_length_243_cov_10.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14469_length_243_cov_10.508197_pilon to pilon.fasta [pilon] Writing NODE_14470_length_243_cov_10.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14470_length_243_cov_10.500000_pilon to pilon.fasta [pilon] Writing NODE_14471_length_243_cov_10.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14471_length_243_cov_10.491803_pilon to pilon.fasta [pilon] Writing NODE_14472_length_243_cov_10.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14472_length_243_cov_10.491803_pilon to pilon.fasta [pilon] Writing NODE_14473_length_243_cov_10.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14473_length_243_cov_10.475410_pilon to pilon.fasta [pilon] Writing NODE_14474_length_243_cov_10.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14474_length_243_cov_10.467213_pilon to pilon.fasta [pilon] Writing NODE_14475_length_243_cov_10.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14475_length_243_cov_10.467213_pilon to pilon.fasta [pilon] Writing NODE_14476_length_243_cov_10.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14476_length_243_cov_10.434426_pilon to pilon.fasta [pilon] Writing NODE_14477_length_243_cov_10.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14477_length_243_cov_10.434426_pilon to pilon.fasta [pilon] Writing NODE_14478_length_243_cov_10.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14478_length_243_cov_10.426230_pilon to pilon.fasta [pilon] Writing NODE_14479_length_243_cov_10.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14479_length_243_cov_10.418033_pilon to pilon.fasta [pilon] Writing NODE_14480_length_243_cov_10.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14480_length_243_cov_10.409836_pilon to pilon.fasta [pilon] Writing NODE_14481_length_243_cov_10.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14481_length_243_cov_10.368852_pilon to pilon.fasta [pilon] Writing NODE_14482_length_243_cov_10.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14482_length_243_cov_10.368852_pilon to pilon.fasta [pilon] Writing NODE_14483_length_243_cov_10.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14483_length_243_cov_10.368852_pilon to pilon.fasta [pilon] Writing NODE_14484_length_243_cov_10.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14484_length_243_cov_10.368852_pilon to pilon.fasta [pilon] Writing NODE_14485_length_243_cov_10.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14485_length_243_cov_10.368852_pilon to pilon.fasta [pilon] Writing NODE_14486_length_243_cov_10.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14486_length_243_cov_10.368852_pilon to pilon.fasta [pilon] Writing NODE_14487_length_243_cov_10.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14487_length_243_cov_10.368852_pilon to pilon.fasta [pilon] Writing NODE_14488_length_243_cov_10.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14488_length_243_cov_10.352459_pilon to pilon.fasta [pilon] Writing NODE_14489_length_243_cov_10.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14489_length_243_cov_10.352459_pilon to pilon.fasta [pilon] Writing NODE_14490_length_243_cov_10.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_14490_length_243_cov_10.344262_pilon to pilon.fasta [pilon] Writing NODE_14491_length_243_cov_10.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14491_length_243_cov_10.336066_pilon to pilon.fasta [pilon] Writing NODE_14492_length_243_cov_10.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14492_length_243_cov_10.327869_pilon to pilon.fasta [pilon] Writing NODE_14493_length_243_cov_10.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14493_length_243_cov_10.327869_pilon to pilon.fasta [pilon] Writing NODE_14494_length_243_cov_10.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14494_length_243_cov_10.327869_pilon to pilon.fasta [pilon] Writing NODE_14495_length_243_cov_10.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14495_length_243_cov_10.319672_pilon to pilon.fasta [pilon] Writing NODE_14496_length_243_cov_10.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14496_length_243_cov_10.319672_pilon to pilon.fasta [pilon] Writing NODE_14497_length_243_cov_10.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14497_length_243_cov_10.319672_pilon to pilon.fasta [pilon] Writing NODE_14498_length_243_cov_10.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14498_length_243_cov_10.319672_pilon to pilon.fasta [pilon] Writing NODE_14499_length_243_cov_10.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_14499_length_243_cov_10.311475_pilon to pilon.fasta [pilon] Writing NODE_14500_length_243_cov_10.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14500_length_243_cov_10.303279_pilon to pilon.fasta [pilon] Writing NODE_14501_length_243_cov_10.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14501_length_243_cov_10.278689_pilon to pilon.fasta [pilon] Writing NODE_14502_length_243_cov_10.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14502_length_243_cov_10.278689_pilon to pilon.fasta [pilon] Writing NODE_14503_length_243_cov_10.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14503_length_243_cov_10.278689_pilon to pilon.fasta [pilon] Writing NODE_14504_length_243_cov_10.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14504_length_243_cov_10.270492_pilon to pilon.fasta [pilon] Writing NODE_14505_length_243_cov_10.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14505_length_243_cov_10.270492_pilon to pilon.fasta [pilon] Writing NODE_14506_length_243_cov_10.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14506_length_243_cov_10.270492_pilon to pilon.fasta [pilon] Writing NODE_14507_length_243_cov_10.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14507_length_243_cov_10.270492_pilon to pilon.fasta [pilon] Writing NODE_14508_length_243_cov_10.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14508_length_243_cov_10.270492_pilon to pilon.fasta [pilon] Writing NODE_14509_length_243_cov_10.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14509_length_243_cov_10.254098_pilon to pilon.fasta [pilon] Writing NODE_14510_length_243_cov_10.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14510_length_243_cov_10.254098_pilon to pilon.fasta [pilon] Writing NODE_14511_length_243_cov_10.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14511_length_243_cov_10.245902_pilon to pilon.fasta [pilon] Writing NODE_14512_length_243_cov_10.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14512_length_243_cov_10.229508_pilon to pilon.fasta [pilon] Writing NODE_14513_length_243_cov_10.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14513_length_243_cov_10.213115_pilon to pilon.fasta [pilon] Writing NODE_14514_length_243_cov_10.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14514_length_243_cov_10.188525_pilon to pilon.fasta [pilon] Writing NODE_14515_length_243_cov_10.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14515_length_243_cov_10.180328_pilon to pilon.fasta [pilon] Writing NODE_14516_length_243_cov_10.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14516_length_243_cov_10.172131_pilon to pilon.fasta [pilon] Writing NODE_14517_length_243_cov_10.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14517_length_243_cov_10.172131_pilon to pilon.fasta [pilon] Writing NODE_14518_length_243_cov_10.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14518_length_243_cov_10.163934_pilon to pilon.fasta [pilon] Writing NODE_14519_length_243_cov_10.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14519_length_243_cov_10.155738_pilon to pilon.fasta [pilon] Writing NODE_14520_length_243_cov_10.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14520_length_243_cov_10.139344_pilon to pilon.fasta [pilon] Writing NODE_14521_length_243_cov_10.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14521_length_243_cov_10.131148_pilon to pilon.fasta [pilon] Writing NODE_14522_length_243_cov_10.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14522_length_243_cov_10.106557_pilon to pilon.fasta [pilon] Writing NODE_14523_length_243_cov_10.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14523_length_243_cov_10.106557_pilon to pilon.fasta [pilon] Writing NODE_14524_length_243_cov_10.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14524_length_243_cov_10.098361_pilon to pilon.fasta [pilon] Writing NODE_14525_length_243_cov_10.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14525_length_243_cov_10.073770_pilon to pilon.fasta [pilon] Writing NODE_14526_length_243_cov_10.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_14526_length_243_cov_10.065574_pilon to pilon.fasta [pilon] Writing NODE_14527_length_243_cov_10.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14527_length_243_cov_10.040984_pilon to pilon.fasta [pilon] Writing NODE_14528_length_243_cov_10.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14528_length_243_cov_10.032787_pilon to pilon.fasta [pilon] Writing NODE_14529_length_243_cov_10.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14529_length_243_cov_10.024590_pilon to pilon.fasta [pilon] Writing NODE_14530_length_243_cov_10.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14530_length_243_cov_10.016393_pilon to pilon.fasta [pilon] Writing NODE_14531_length_243_cov_10.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14531_length_243_cov_10.016393_pilon to pilon.fasta [pilon] Writing NODE_14532_length_243_cov_10.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14532_length_243_cov_10.016393_pilon to pilon.fasta [pilon] Writing NODE_14533_length_243_cov_10.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14533_length_243_cov_10.016393_pilon to pilon.fasta [pilon] Writing NODE_14534_length_243_cov_10.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14534_length_243_cov_10.008197_pilon to pilon.fasta [pilon] Writing NODE_14535_length_243_cov_10.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14535_length_243_cov_10.008197_pilon to pilon.fasta [pilon] Writing NODE_14536_length_243_cov_10.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14536_length_243_cov_10.008197_pilon to pilon.fasta [pilon] Writing NODE_14537_length_243_cov_9.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14537_length_243_cov_9.991803_pilon to pilon.fasta [pilon] Writing NODE_14538_length_243_cov_9.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14538_length_243_cov_9.983607_pilon to pilon.fasta [pilon] Writing NODE_14539_length_243_cov_9.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14539_length_243_cov_9.975410_pilon to pilon.fasta [pilon] Writing NODE_14540_length_243_cov_9.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14540_length_243_cov_9.975410_pilon to pilon.fasta [pilon] Writing NODE_14541_length_243_cov_9.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14541_length_243_cov_9.975410_pilon to pilon.fasta [pilon] Writing NODE_14542_length_243_cov_9.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14542_length_243_cov_9.959016_pilon to pilon.fasta [pilon] Writing NODE_14543_length_243_cov_9.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14543_length_243_cov_9.959016_pilon to pilon.fasta [pilon] Writing NODE_14544_length_243_cov_9.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14544_length_243_cov_9.934426_pilon to pilon.fasta [pilon] Writing NODE_14545_length_243_cov_9.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14545_length_243_cov_9.926230_pilon to pilon.fasta [pilon] Writing NODE_14546_length_243_cov_9.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14546_length_243_cov_9.918033_pilon to pilon.fasta [pilon] Writing NODE_14547_length_243_cov_9.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14547_length_243_cov_9.918033_pilon to pilon.fasta [pilon] Writing NODE_14548_length_243_cov_9.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14548_length_243_cov_9.918033_pilon to pilon.fasta [pilon] Writing NODE_14549_length_243_cov_9.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14549_length_243_cov_9.918033_pilon to pilon.fasta [pilon] Writing NODE_14550_length_243_cov_9.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14550_length_243_cov_9.909836_pilon to pilon.fasta [pilon] Writing NODE_14551_length_243_cov_9.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14551_length_243_cov_9.901639_pilon to pilon.fasta [pilon] Writing NODE_14552_length_243_cov_9.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14552_length_243_cov_9.893443_pilon to pilon.fasta [pilon] Writing NODE_14553_length_243_cov_9.893443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14553_length_243_cov_9.893443_pilon to pilon.fasta [pilon] Writing NODE_14554_length_243_cov_9.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14554_length_243_cov_9.877049_pilon to pilon.fasta [pilon] Writing NODE_14555_length_243_cov_9.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14555_length_243_cov_9.868852_pilon to pilon.fasta [pilon] Writing NODE_14556_length_243_cov_9.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14556_length_243_cov_9.860656_pilon to pilon.fasta [pilon] Writing NODE_14557_length_243_cov_9.844262:1-243 changes to pilon.changes [pilon] Writing updated NODE_14557_length_243_cov_9.844262_pilon to pilon.fasta [pilon] Writing NODE_14558_length_243_cov_9.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14558_length_243_cov_9.836066_pilon to pilon.fasta [pilon] Writing NODE_14559_length_243_cov_9.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14559_length_243_cov_9.836066_pilon to pilon.fasta [pilon] Writing NODE_14560_length_243_cov_9.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14560_length_243_cov_9.819672_pilon to pilon.fasta [pilon] Writing NODE_14561_length_243_cov_9.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14561_length_243_cov_9.819672_pilon to pilon.fasta [pilon] Writing NODE_14562_length_243_cov_9.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14562_length_243_cov_9.803279_pilon to pilon.fasta [pilon] Writing NODE_14563_length_243_cov_9.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14563_length_243_cov_9.795082_pilon to pilon.fasta [pilon] Writing NODE_14564_length_243_cov_9.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14564_length_243_cov_9.795082_pilon to pilon.fasta [pilon] Writing NODE_14565_length_243_cov_9.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14565_length_243_cov_9.778689_pilon to pilon.fasta [pilon] Writing NODE_14566_length_243_cov_9.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14566_length_243_cov_9.770492_pilon to pilon.fasta [pilon] Writing NODE_14567_length_243_cov_9.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14567_length_243_cov_9.770492_pilon to pilon.fasta [pilon] Writing NODE_14568_length_243_cov_9.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14568_length_243_cov_9.770492_pilon to pilon.fasta [pilon] Writing NODE_14569_length_243_cov_9.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14569_length_243_cov_9.762295_pilon to pilon.fasta [pilon] Writing NODE_14570_length_243_cov_9.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14570_length_243_cov_9.737705_pilon to pilon.fasta [pilon] Writing NODE_14571_length_243_cov_9.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14571_length_243_cov_9.737705_pilon to pilon.fasta [pilon] Writing NODE_14572_length_243_cov_9.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14572_length_243_cov_9.696721_pilon to pilon.fasta [pilon] Writing NODE_14573_length_243_cov_9.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14573_length_243_cov_9.672131_pilon to pilon.fasta [pilon] Writing NODE_14574_length_243_cov_9.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14574_length_243_cov_9.647541_pilon to pilon.fasta [pilon] Writing NODE_14575_length_243_cov_9.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14575_length_243_cov_9.639344_pilon to pilon.fasta [pilon] Writing NODE_14576_length_243_cov_9.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14576_length_243_cov_9.631148_pilon to pilon.fasta [pilon] Writing NODE_14577_length_243_cov_9.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14577_length_243_cov_9.614754_pilon to pilon.fasta [pilon] Writing NODE_14578_length_243_cov_9.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14578_length_243_cov_9.614754_pilon to pilon.fasta [pilon] Writing NODE_14579_length_243_cov_9.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14579_length_243_cov_9.606557_pilon to pilon.fasta [pilon] Writing NODE_14580_length_243_cov_9.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14580_length_243_cov_9.598361_pilon to pilon.fasta [pilon] Writing NODE_14581_length_243_cov_9.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14581_length_243_cov_9.581967_pilon to pilon.fasta [pilon] Writing NODE_14582_length_243_cov_9.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14582_length_243_cov_9.581967_pilon to pilon.fasta [pilon] Writing NODE_14583_length_243_cov_9.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14583_length_243_cov_9.573770_pilon to pilon.fasta [pilon] Writing NODE_14584_length_243_cov_9.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_14584_length_243_cov_9.565574_pilon to pilon.fasta [pilon] Writing NODE_14585_length_243_cov_9.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14585_length_243_cov_9.549180_pilon to pilon.fasta [pilon] Writing NODE_14586_length_243_cov_9.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14586_length_243_cov_9.540984_pilon to pilon.fasta [pilon] Writing NODE_14587_length_243_cov_9.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14587_length_243_cov_9.540984_pilon to pilon.fasta [pilon] Writing NODE_14588_length_243_cov_9.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14588_length_243_cov_9.532787_pilon to pilon.fasta [pilon] Writing NODE_14589_length_243_cov_9.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14589_length_243_cov_9.532787_pilon to pilon.fasta [pilon] Writing NODE_14590_length_243_cov_9.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14590_length_243_cov_9.532787_pilon to pilon.fasta [pilon] Writing NODE_14591_length_243_cov_9.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14591_length_243_cov_9.483607_pilon to pilon.fasta [pilon] Writing NODE_14592_length_243_cov_9.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14592_length_243_cov_9.450820_pilon to pilon.fasta [pilon] Writing NODE_14593_length_243_cov_9.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14593_length_243_cov_9.450820_pilon to pilon.fasta [pilon] Writing NODE_14594_length_243_cov_9.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14594_length_243_cov_9.442623_pilon to pilon.fasta [pilon] Writing NODE_14595_length_243_cov_9.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14595_length_243_cov_9.442623_pilon to pilon.fasta [pilon] Writing NODE_14596_length_243_cov_9.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14596_length_243_cov_9.426230_pilon to pilon.fasta [pilon] Writing NODE_14597_length_243_cov_9.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14597_length_243_cov_9.418033_pilon to pilon.fasta [pilon] Writing NODE_14598_length_243_cov_9.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14598_length_243_cov_9.401639_pilon to pilon.fasta [pilon] Writing NODE_14599_length_243_cov_9.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14599_length_243_cov_9.393443_pilon to pilon.fasta [pilon] Writing NODE_14600_length_243_cov_9.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14600_length_243_cov_9.393443_pilon to pilon.fasta [pilon] Writing NODE_14601_length_243_cov_9.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_14601_length_243_cov_9.385246_pilon to pilon.fasta [pilon] Writing NODE_14602_length_243_cov_9.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14602_length_243_cov_9.377049_pilon to pilon.fasta [pilon] Writing NODE_14603_length_243_cov_9.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14603_length_243_cov_9.360656_pilon to pilon.fasta [pilon] Writing NODE_14604_length_243_cov_9.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14604_length_243_cov_9.360656_pilon to pilon.fasta [pilon] Writing NODE_14605_length_243_cov_9.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14605_length_243_cov_9.352459_pilon to pilon.fasta [pilon] Writing NODE_14606_length_243_cov_9.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14606_length_243_cov_9.352459_pilon to pilon.fasta [pilon] Writing NODE_14607_length_243_cov_9.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_14607_length_243_cov_9.344262_pilon to pilon.fasta [pilon] Writing NODE_14608_length_243_cov_9.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14608_length_243_cov_9.319672_pilon to pilon.fasta [pilon] Writing NODE_14609_length_243_cov_9.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14609_length_243_cov_9.319672_pilon to pilon.fasta [pilon] Writing NODE_14610_length_243_cov_9.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_14610_length_243_cov_9.311475_pilon to pilon.fasta [pilon] Writing NODE_14611_length_243_cov_9.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14611_length_243_cov_9.303279_pilon to pilon.fasta [pilon] Writing NODE_14612_length_243_cov_9.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14612_length_243_cov_9.303279_pilon to pilon.fasta [pilon] Writing NODE_14613_length_243_cov_9.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14613_length_243_cov_9.303279_pilon to pilon.fasta [pilon] Writing NODE_14614_length_243_cov_9.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14614_length_243_cov_9.295082_pilon to pilon.fasta [pilon] Writing NODE_14615_length_243_cov_9.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14615_length_243_cov_9.286885_pilon to pilon.fasta [pilon] Writing NODE_14616_length_243_cov_9.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14616_length_243_cov_9.286885_pilon to pilon.fasta [pilon] Writing NODE_14617_length_243_cov_9.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14617_length_243_cov_9.278689_pilon to pilon.fasta [pilon] Writing NODE_14618_length_243_cov_9.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14618_length_243_cov_9.262295_pilon to pilon.fasta [pilon] Writing NODE_14619_length_243_cov_9.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14619_length_243_cov_9.254098_pilon to pilon.fasta [pilon] Writing NODE_14620_length_243_cov_9.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14620_length_243_cov_9.245902_pilon to pilon.fasta [pilon] Writing NODE_14621_length_243_cov_9.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14621_length_243_cov_9.245902_pilon to pilon.fasta [pilon] Writing NODE_14622_length_243_cov_9.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14622_length_243_cov_9.237705_pilon to pilon.fasta [pilon] Writing NODE_14623_length_243_cov_9.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14623_length_243_cov_9.237705_pilon to pilon.fasta [pilon] Writing NODE_14624_length_243_cov_9.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14624_length_243_cov_9.229508_pilon to pilon.fasta [pilon] Writing NODE_14625_length_243_cov_9.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14625_length_243_cov_9.229508_pilon to pilon.fasta [pilon] Writing NODE_14626_length_243_cov_9.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14626_length_243_cov_9.229508_pilon to pilon.fasta [pilon] Writing NODE_14627_length_243_cov_9.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14627_length_243_cov_9.229508_pilon to pilon.fasta [pilon] Writing NODE_14628_length_243_cov_9.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14628_length_243_cov_9.221311_pilon to pilon.fasta [pilon] Writing NODE_14629_length_243_cov_9.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14629_length_243_cov_9.221311_pilon to pilon.fasta [pilon] Writing NODE_14630_length_243_cov_9.213115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14630_length_243_cov_9.213115_pilon to pilon.fasta [pilon] Writing NODE_14631_length_243_cov_9.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14631_length_243_cov_9.196721_pilon to pilon.fasta [pilon] Writing NODE_14632_length_243_cov_9.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14632_length_243_cov_9.172131_pilon to pilon.fasta [pilon] Writing NODE_14633_length_243_cov_9.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14633_length_243_cov_9.172131_pilon to pilon.fasta [pilon] Writing NODE_14634_length_243_cov_9.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14634_length_243_cov_9.163934_pilon to pilon.fasta [pilon] Writing NODE_14635_length_243_cov_9.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14635_length_243_cov_9.163934_pilon to pilon.fasta [pilon] Writing NODE_14636_length_243_cov_9.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14636_length_243_cov_9.155738_pilon to pilon.fasta [pilon] Writing NODE_14637_length_243_cov_9.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14637_length_243_cov_9.131148_pilon to pilon.fasta [pilon] Writing NODE_14638_length_243_cov_9.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14638_length_243_cov_9.122951_pilon to pilon.fasta [pilon] Writing NODE_14639_length_243_cov_9.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14639_length_243_cov_9.106557_pilon to pilon.fasta [pilon] Writing NODE_14640_length_243_cov_9.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14640_length_243_cov_9.090164_pilon to pilon.fasta [pilon] Writing NODE_14641_length_243_cov_9.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14641_length_243_cov_9.081967_pilon to pilon.fasta [pilon] Writing NODE_14642_length_243_cov_9.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14642_length_243_cov_9.073770_pilon to pilon.fasta [pilon] Writing NODE_14643_length_243_cov_9.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14643_length_243_cov_9.073770_pilon to pilon.fasta [pilon] Writing NODE_14644_length_243_cov_9.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_14644_length_243_cov_9.065574_pilon to pilon.fasta [pilon] Writing NODE_14645_length_243_cov_9.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_14645_length_243_cov_9.065574_pilon to pilon.fasta [pilon] Writing NODE_14646_length_243_cov_9.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14646_length_243_cov_9.057377_pilon to pilon.fasta [pilon] Writing NODE_14647_length_243_cov_9.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14647_length_243_cov_9.049180_pilon to pilon.fasta [pilon] Writing NODE_14648_length_243_cov_9.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14648_length_243_cov_9.040984_pilon to pilon.fasta [pilon] Writing NODE_14649_length_243_cov_9.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14649_length_243_cov_9.040984_pilon to pilon.fasta [pilon] Writing NODE_14650_length_243_cov_9.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14650_length_243_cov_9.016393_pilon to pilon.fasta [pilon] Writing NODE_14651_length_243_cov_9.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14651_length_243_cov_9.000000_pilon to pilon.fasta [pilon] Writing NODE_14652_length_243_cov_9.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14652_length_243_cov_9.000000_pilon to pilon.fasta [pilon] Writing NODE_14653_length_243_cov_8.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14653_length_243_cov_8.975410_pilon to pilon.fasta [pilon] Writing NODE_14654_length_243_cov_8.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14654_length_243_cov_8.975410_pilon to pilon.fasta [pilon] Writing NODE_14655_length_243_cov_8.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14655_length_243_cov_8.975410_pilon to pilon.fasta [pilon] Writing NODE_14656_length_243_cov_8.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14656_length_243_cov_8.967213_pilon to pilon.fasta [pilon] Writing NODE_14657_length_243_cov_8.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14657_length_243_cov_8.967213_pilon to pilon.fasta [pilon] Writing NODE_14658_length_243_cov_8.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14658_length_243_cov_8.967213_pilon to pilon.fasta [pilon] Writing NODE_14659_length_243_cov_8.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14659_length_243_cov_8.959016_pilon to pilon.fasta [pilon] Writing NODE_14660_length_243_cov_8.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14660_length_243_cov_8.950820_pilon to pilon.fasta [pilon] Writing NODE_14661_length_243_cov_8.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14661_length_243_cov_8.942623_pilon to pilon.fasta [pilon] Writing NODE_14662_length_243_cov_8.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14662_length_243_cov_8.934426_pilon to pilon.fasta [pilon] Writing NODE_14663_length_243_cov_8.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14663_length_243_cov_8.918033_pilon to pilon.fasta [pilon] Writing NODE_14664_length_243_cov_8.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14664_length_243_cov_8.901639_pilon to pilon.fasta [pilon] Writing NODE_14665_length_243_cov_8.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14665_length_243_cov_8.901639_pilon to pilon.fasta [pilon] Writing NODE_14666_length_243_cov_8.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14666_length_243_cov_8.877049_pilon to pilon.fasta [pilon] Writing NODE_14667_length_243_cov_8.868852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14667_length_243_cov_8.868852_pilon to pilon.fasta [pilon] Writing NODE_14668_length_243_cov_8.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14668_length_243_cov_8.860656_pilon to pilon.fasta [pilon] Writing NODE_14669_length_243_cov_8.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14669_length_243_cov_8.860656_pilon to pilon.fasta [pilon] Writing NODE_14670_length_243_cov_8.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14670_length_243_cov_8.836066_pilon to pilon.fasta [pilon] Writing NODE_14671_length_243_cov_8.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14671_length_243_cov_8.819672_pilon to pilon.fasta [pilon] Writing NODE_14672_length_243_cov_8.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14672_length_243_cov_8.795082_pilon to pilon.fasta [pilon] Writing NODE_14673_length_243_cov_8.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14673_length_243_cov_8.770492_pilon to pilon.fasta [pilon] Writing NODE_14674_length_243_cov_8.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14674_length_243_cov_8.770492_pilon to pilon.fasta [pilon] Writing NODE_14675_length_243_cov_8.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14675_length_243_cov_8.762295_pilon to pilon.fasta [pilon] Writing NODE_14676_length_243_cov_8.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14676_length_243_cov_8.762295_pilon to pilon.fasta [pilon] Writing NODE_14677_length_243_cov_8.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14677_length_243_cov_8.762295_pilon to pilon.fasta [pilon] Writing NODE_14678_length_243_cov_8.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14678_length_243_cov_8.745902_pilon to pilon.fasta [pilon] Writing NODE_14679_length_243_cov_8.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14679_length_243_cov_8.737705_pilon to pilon.fasta [pilon] Writing NODE_14680_length_243_cov_8.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14680_length_243_cov_8.737705_pilon to pilon.fasta [pilon] Writing NODE_14681_length_243_cov_8.737705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14681_length_243_cov_8.737705_pilon to pilon.fasta [pilon] Writing NODE_14682_length_243_cov_8.729508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14682_length_243_cov_8.729508_pilon to pilon.fasta [pilon] Writing NODE_14683_length_243_cov_8.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14683_length_243_cov_8.713115_pilon to pilon.fasta [pilon] Writing NODE_14684_length_243_cov_8.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14684_length_243_cov_8.713115_pilon to pilon.fasta [pilon] Writing NODE_14685_length_243_cov_8.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14685_length_243_cov_8.704918_pilon to pilon.fasta [pilon] Writing NODE_14686_length_243_cov_8.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14686_length_243_cov_8.704918_pilon to pilon.fasta [pilon] Writing NODE_14687_length_243_cov_8.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14687_length_243_cov_8.688525_pilon to pilon.fasta [pilon] Writing NODE_14688_length_243_cov_8.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14688_length_243_cov_8.680328_pilon to pilon.fasta [pilon] Writing NODE_14689_length_243_cov_8.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14689_length_243_cov_8.680328_pilon to pilon.fasta [pilon] Writing NODE_14690_length_243_cov_8.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14690_length_243_cov_8.672131_pilon to pilon.fasta [pilon] Writing NODE_14691_length_243_cov_8.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14691_length_243_cov_8.655738_pilon to pilon.fasta [pilon] Writing NODE_14692_length_243_cov_8.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14692_length_243_cov_8.647541_pilon to pilon.fasta [pilon] Writing NODE_14693_length_243_cov_8.639344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14693_length_243_cov_8.639344_pilon to pilon.fasta [pilon] Writing NODE_14694_length_243_cov_8.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14694_length_243_cov_8.622951_pilon to pilon.fasta [pilon] Writing NODE_14695_length_243_cov_8.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14695_length_243_cov_8.622951_pilon to pilon.fasta [pilon] Writing NODE_14696_length_243_cov_8.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14696_length_243_cov_8.598361_pilon to pilon.fasta [pilon] Writing NODE_14697_length_243_cov_8.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14697_length_243_cov_8.598361_pilon to pilon.fasta [pilon] Writing NODE_14698_length_243_cov_8.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14698_length_243_cov_8.581967_pilon to pilon.fasta [pilon] Writing NODE_14699_length_243_cov_8.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14699_length_243_cov_8.573770_pilon to pilon.fasta [pilon] Writing NODE_14700_length_243_cov_8.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14700_length_243_cov_8.573770_pilon to pilon.fasta [pilon] Writing NODE_14701_length_243_cov_8.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14701_length_243_cov_8.549180_pilon to pilon.fasta [pilon] Writing NODE_14702_length_243_cov_8.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14702_length_243_cov_8.549180_pilon to pilon.fasta [pilon] Writing NODE_14703_length_243_cov_8.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14703_length_243_cov_8.540984_pilon to pilon.fasta [pilon] Writing NODE_14704_length_243_cov_8.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14704_length_243_cov_8.540984_pilon to pilon.fasta [pilon] Writing NODE_14705_length_243_cov_8.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14705_length_243_cov_8.516393_pilon to pilon.fasta [pilon] Writing NODE_14706_length_243_cov_8.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14706_length_243_cov_8.508197_pilon to pilon.fasta [pilon] Writing NODE_14707_length_243_cov_8.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14707_length_243_cov_8.508197_pilon to pilon.fasta [pilon] Writing NODE_14708_length_243_cov_8.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14708_length_243_cov_8.500000_pilon to pilon.fasta [pilon] Writing NODE_14709_length_243_cov_8.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14709_length_243_cov_8.500000_pilon to pilon.fasta [pilon] Writing NODE_14710_length_243_cov_8.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14710_length_243_cov_8.491803_pilon to pilon.fasta [pilon] Writing NODE_14711_length_243_cov_8.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14711_length_243_cov_8.491803_pilon to pilon.fasta [pilon] Writing NODE_14712_length_243_cov_8.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14712_length_243_cov_8.483607_pilon to pilon.fasta [pilon] Writing NODE_14713_length_243_cov_8.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14713_length_243_cov_8.475410_pilon to pilon.fasta [pilon] Writing NODE_14714_length_243_cov_8.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14714_length_243_cov_8.467213_pilon to pilon.fasta [pilon] Writing NODE_14715_length_243_cov_8.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14715_length_243_cov_8.467213_pilon to pilon.fasta [pilon] Writing NODE_14716_length_243_cov_8.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14716_length_243_cov_8.450820_pilon to pilon.fasta [pilon] Writing NODE_14717_length_243_cov_8.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14717_length_243_cov_8.450820_pilon to pilon.fasta [pilon] Writing NODE_14718_length_243_cov_8.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14718_length_243_cov_8.442623_pilon to pilon.fasta [pilon] Writing NODE_14719_length_243_cov_8.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14719_length_243_cov_8.442623_pilon to pilon.fasta [pilon] Writing NODE_14720_length_243_cov_8.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14720_length_243_cov_8.434426_pilon to pilon.fasta [pilon] Writing NODE_14721_length_243_cov_8.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14721_length_243_cov_8.401639_pilon to pilon.fasta [pilon] Writing NODE_14722_length_243_cov_8.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14722_length_243_cov_8.401639_pilon to pilon.fasta [pilon] Writing NODE_14723_length_243_cov_8.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14723_length_243_cov_8.393443_pilon to pilon.fasta [pilon] Writing NODE_14724_length_243_cov_8.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14724_length_243_cov_8.393443_pilon to pilon.fasta [pilon] Writing NODE_14725_length_243_cov_8.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14725_length_243_cov_8.377049_pilon to pilon.fasta [pilon] Writing NODE_14726_length_243_cov_8.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14726_length_243_cov_8.377049_pilon to pilon.fasta [pilon] Writing NODE_14727_length_243_cov_8.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14727_length_243_cov_8.360656_pilon to pilon.fasta [pilon] Writing NODE_14728_length_243_cov_8.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14728_length_243_cov_8.360656_pilon to pilon.fasta [pilon] Writing NODE_14729_length_243_cov_8.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14729_length_243_cov_8.352459_pilon to pilon.fasta [pilon] Writing NODE_14730_length_243_cov_8.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14730_length_243_cov_8.336066_pilon to pilon.fasta [pilon] Writing NODE_14731_length_243_cov_8.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14731_length_243_cov_8.327869_pilon to pilon.fasta [pilon] Writing NODE_14732_length_243_cov_8.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14732_length_243_cov_8.303279_pilon to pilon.fasta [pilon] Writing NODE_14733_length_243_cov_8.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14733_length_243_cov_8.295082_pilon to pilon.fasta [pilon] Writing NODE_14734_length_243_cov_8.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14734_length_243_cov_8.270492_pilon to pilon.fasta [pilon] Writing NODE_14735_length_243_cov_8.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14735_length_243_cov_8.262295_pilon to pilon.fasta [pilon] Writing NODE_14736_length_243_cov_8.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14736_length_243_cov_8.245902_pilon to pilon.fasta [pilon] Writing NODE_14737_length_243_cov_8.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14737_length_243_cov_8.229508_pilon to pilon.fasta [pilon] Writing NODE_14738_length_243_cov_8.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14738_length_243_cov_8.229508_pilon to pilon.fasta [pilon] Writing NODE_14739_length_243_cov_8.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14739_length_243_cov_8.221311_pilon to pilon.fasta [pilon] Writing NODE_14740_length_243_cov_8.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14740_length_243_cov_8.221311_pilon to pilon.fasta [pilon] Writing NODE_14741_length_243_cov_8.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14741_length_243_cov_8.180328_pilon to pilon.fasta [pilon] Writing NODE_14742_length_243_cov_8.172131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14742_length_243_cov_8.172131_pilon to pilon.fasta [pilon] Writing NODE_14743_length_243_cov_8.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14743_length_243_cov_8.155738_pilon to pilon.fasta [pilon] Writing NODE_14744_length_243_cov_8.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14744_length_243_cov_8.147541_pilon to pilon.fasta [pilon] Writing NODE_14745_length_243_cov_8.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14745_length_243_cov_8.139344_pilon to pilon.fasta [pilon] Writing NODE_14746_length_243_cov_8.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14746_length_243_cov_8.131148_pilon to pilon.fasta [pilon] Writing NODE_14747_length_243_cov_8.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14747_length_243_cov_8.131148_pilon to pilon.fasta [pilon] Writing NODE_14748_length_243_cov_8.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14748_length_243_cov_8.122951_pilon to pilon.fasta [pilon] Writing NODE_14749_length_243_cov_8.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14749_length_243_cov_8.106557_pilon to pilon.fasta [pilon] Writing NODE_14750_length_243_cov_8.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14750_length_243_cov_8.106557_pilon to pilon.fasta [pilon] Writing NODE_14751_length_243_cov_8.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14751_length_243_cov_8.106557_pilon to pilon.fasta [pilon] Writing NODE_14752_length_243_cov_8.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14752_length_243_cov_8.098361_pilon to pilon.fasta [pilon] Writing NODE_14753_length_243_cov_8.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14753_length_243_cov_8.098361_pilon to pilon.fasta [pilon] Writing NODE_14754_length_243_cov_8.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14754_length_243_cov_8.090164_pilon to pilon.fasta [pilon] Writing NODE_14755_length_243_cov_8.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14755_length_243_cov_8.057377_pilon to pilon.fasta [pilon] Writing NODE_14756_length_243_cov_8.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14756_length_243_cov_8.057377_pilon to pilon.fasta [pilon] Writing NODE_14757_length_243_cov_8.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14757_length_243_cov_8.057377_pilon to pilon.fasta [pilon] Writing NODE_14758_length_243_cov_8.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14758_length_243_cov_8.049180_pilon to pilon.fasta [pilon] Writing NODE_14759_length_243_cov_8.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14759_length_243_cov_8.049180_pilon to pilon.fasta [pilon] Writing NODE_14760_length_243_cov_8.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14760_length_243_cov_8.040984_pilon to pilon.fasta [pilon] Writing NODE_14761_length_243_cov_8.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14761_length_243_cov_8.024590_pilon to pilon.fasta [pilon] Writing NODE_14762_length_243_cov_8.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14762_length_243_cov_8.024590_pilon to pilon.fasta [pilon] Writing NODE_14763_length_243_cov_8.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14763_length_243_cov_8.000000_pilon to pilon.fasta [pilon] Writing NODE_14764_length_243_cov_8.000000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14764_length_243_cov_8.000000_pilon to pilon.fasta [pilon] Writing NODE_14765_length_243_cov_7.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14765_length_243_cov_7.991803_pilon to pilon.fasta [pilon] Writing NODE_14766_length_243_cov_7.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14766_length_243_cov_7.991803_pilon to pilon.fasta [pilon] Writing NODE_14767_length_243_cov_7.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14767_length_243_cov_7.983607_pilon to pilon.fasta [pilon] Writing NODE_14768_length_243_cov_7.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14768_length_243_cov_7.967213_pilon to pilon.fasta [pilon] Writing NODE_14769_length_243_cov_7.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14769_length_243_cov_7.967213_pilon to pilon.fasta [pilon] Writing NODE_14770_length_243_cov_7.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14770_length_243_cov_7.967213_pilon to pilon.fasta [pilon] Writing NODE_14771_length_243_cov_7.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14771_length_243_cov_7.967213_pilon to pilon.fasta [pilon] Writing NODE_14772_length_243_cov_7.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14772_length_243_cov_7.967213_pilon to pilon.fasta [pilon] Writing NODE_14773_length_243_cov_7.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14773_length_243_cov_7.959016_pilon to pilon.fasta [pilon] Writing NODE_14774_length_243_cov_7.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14774_length_243_cov_7.959016_pilon to pilon.fasta [pilon] Writing NODE_14775_length_243_cov_7.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14775_length_243_cov_7.959016_pilon to pilon.fasta [pilon] Writing NODE_14776_length_243_cov_7.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14776_length_243_cov_7.950820_pilon to pilon.fasta [pilon] Writing NODE_14777_length_243_cov_7.950820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14777_length_243_cov_7.950820_pilon to pilon.fasta [pilon] Writing NODE_14778_length_243_cov_7.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14778_length_243_cov_7.942623_pilon to pilon.fasta [pilon] Writing NODE_14779_length_243_cov_7.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14779_length_243_cov_7.942623_pilon to pilon.fasta [pilon] Writing NODE_14780_length_243_cov_7.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14780_length_243_cov_7.918033_pilon to pilon.fasta [pilon] Writing NODE_14781_length_243_cov_7.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14781_length_243_cov_7.901639_pilon to pilon.fasta [pilon] Writing NODE_14782_length_243_cov_7.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14782_length_243_cov_7.901639_pilon to pilon.fasta [pilon] Writing NODE_14783_length_243_cov_7.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14783_length_243_cov_7.877049_pilon to pilon.fasta [pilon] Writing NODE_14784_length_243_cov_7.860656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14784_length_243_cov_7.860656_pilon to pilon.fasta [pilon] Writing NODE_14785_length_243_cov_7.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14785_length_243_cov_7.827869_pilon to pilon.fasta [pilon] Writing NODE_14786_length_243_cov_7.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14786_length_243_cov_7.819672_pilon to pilon.fasta [pilon] Writing NODE_14787_length_243_cov_7.819672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14787_length_243_cov_7.819672_pilon to pilon.fasta [pilon] Writing NODE_14788_length_243_cov_7.811475:1-243 changes to pilon.changes [pilon] Writing updated NODE_14788_length_243_cov_7.811475_pilon to pilon.fasta [pilon] Writing NODE_14789_length_243_cov_7.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14789_length_243_cov_7.786885_pilon to pilon.fasta [pilon] Writing NODE_14790_length_243_cov_7.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14790_length_243_cov_7.786885_pilon to pilon.fasta [pilon] Writing NODE_14791_length_243_cov_7.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14791_length_243_cov_7.778689_pilon to pilon.fasta [pilon] Writing NODE_14792_length_243_cov_7.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14792_length_243_cov_7.778689_pilon to pilon.fasta [pilon] Writing NODE_14793_length_243_cov_7.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14793_length_243_cov_7.762295_pilon to pilon.fasta [pilon] Writing NODE_14794_length_243_cov_7.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14794_length_243_cov_7.762295_pilon to pilon.fasta [pilon] Writing NODE_14795_length_243_cov_7.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14795_length_243_cov_7.745902_pilon to pilon.fasta [pilon] Writing NODE_14796_length_243_cov_7.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14796_length_243_cov_7.721311_pilon to pilon.fasta [pilon] Writing NODE_14797_length_243_cov_7.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14797_length_243_cov_7.721311_pilon to pilon.fasta [pilon] Writing NODE_14798_length_243_cov_7.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14798_length_243_cov_7.721311_pilon to pilon.fasta [pilon] Writing NODE_14799_length_243_cov_7.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14799_length_243_cov_7.721311_pilon to pilon.fasta [pilon] Writing NODE_14800_length_243_cov_7.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14800_length_243_cov_7.696721_pilon to pilon.fasta [pilon] Writing NODE_14801_length_243_cov_7.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14801_length_243_cov_7.696721_pilon to pilon.fasta [pilon] Writing NODE_14802_length_243_cov_7.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14802_length_243_cov_7.696721_pilon to pilon.fasta [pilon] Writing NODE_14803_length_243_cov_7.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14803_length_243_cov_7.688525_pilon to pilon.fasta [pilon] Writing NODE_14804_length_243_cov_7.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14804_length_243_cov_7.680328_pilon to pilon.fasta [pilon] Writing NODE_14805_length_243_cov_7.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14805_length_243_cov_7.680328_pilon to pilon.fasta [pilon] Writing NODE_14806_length_243_cov_7.680328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14806_length_243_cov_7.680328_pilon to pilon.fasta [pilon] Writing NODE_14807_length_243_cov_7.672131:1-243 changes to pilon.changes [pilon] Writing updated NODE_14807_length_243_cov_7.672131_pilon to pilon.fasta [pilon] Writing NODE_14808_length_243_cov_7.663934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14808_length_243_cov_7.663934_pilon to pilon.fasta [pilon] Writing NODE_14809_length_243_cov_7.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14809_length_243_cov_7.647541_pilon to pilon.fasta [pilon] Writing NODE_14810_length_243_cov_7.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14810_length_243_cov_7.647541_pilon to pilon.fasta [pilon] Writing NODE_14811_length_243_cov_7.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14811_length_243_cov_7.631148_pilon to pilon.fasta [pilon] Writing NODE_14812_length_243_cov_7.631148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14812_length_243_cov_7.631148_pilon to pilon.fasta [pilon] Writing NODE_14813_length_243_cov_7.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14813_length_243_cov_7.590164_pilon to pilon.fasta [pilon] Writing NODE_14814_length_243_cov_7.581967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14814_length_243_cov_7.581967_pilon to pilon.fasta [pilon] Writing NODE_14815_length_243_cov_7.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14815_length_243_cov_7.573770_pilon to pilon.fasta [pilon] Writing NODE_14816_length_243_cov_7.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_14816_length_243_cov_7.565574_pilon to pilon.fasta [pilon] Writing NODE_14817_length_243_cov_7.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14817_length_243_cov_7.508197_pilon to pilon.fasta [pilon] Writing NODE_14818_length_243_cov_7.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14818_length_243_cov_7.508197_pilon to pilon.fasta [pilon] Writing NODE_14819_length_243_cov_7.508197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14819_length_243_cov_7.508197_pilon to pilon.fasta [pilon] Writing NODE_14820_length_243_cov_7.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14820_length_243_cov_7.500000_pilon to pilon.fasta [pilon] Writing NODE_14821_length_243_cov_7.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14821_length_243_cov_7.483607_pilon to pilon.fasta [pilon] Writing NODE_14822_length_243_cov_7.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14822_length_243_cov_7.475410_pilon to pilon.fasta [pilon] Writing NODE_14823_length_243_cov_7.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14823_length_243_cov_7.475410_pilon to pilon.fasta [pilon] Writing NODE_14824_length_243_cov_7.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14824_length_243_cov_7.459016_pilon to pilon.fasta [pilon] Writing NODE_14825_length_243_cov_7.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14825_length_243_cov_7.459016_pilon to pilon.fasta [pilon] Writing NODE_14826_length_243_cov_7.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14826_length_243_cov_7.459016_pilon to pilon.fasta [pilon] Writing NODE_14827_length_243_cov_7.450820:1-243 changes to pilon.changes [pilon] Writing updated NODE_14827_length_243_cov_7.450820_pilon to pilon.fasta [pilon] Writing NODE_14828_length_243_cov_7.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14828_length_243_cov_7.434426_pilon to pilon.fasta [pilon] Writing NODE_14829_length_243_cov_7.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14829_length_243_cov_7.418033_pilon to pilon.fasta [pilon] Writing NODE_14830_length_243_cov_7.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14830_length_243_cov_7.409836_pilon to pilon.fasta [pilon] Writing NODE_14831_length_243_cov_7.401639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14831_length_243_cov_7.401639_pilon to pilon.fasta [pilon] Writing NODE_14832_length_243_cov_7.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14832_length_243_cov_7.393443_pilon to pilon.fasta [pilon] Writing NODE_14833_length_243_cov_7.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_14833_length_243_cov_7.385246_pilon to pilon.fasta [pilon] Writing NODE_14834_length_243_cov_7.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_14834_length_243_cov_7.385246_pilon to pilon.fasta [pilon] Writing NODE_14835_length_243_cov_7.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14835_length_243_cov_7.377049_pilon to pilon.fasta [pilon] Writing NODE_14836_length_243_cov_7.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14836_length_243_cov_7.368852_pilon to pilon.fasta [pilon] Writing NODE_14837_length_243_cov_7.368852:1-243 changes to pilon.changes [pilon] Writing updated NODE_14837_length_243_cov_7.368852_pilon to pilon.fasta [pilon] Writing NODE_14838_length_243_cov_7.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14838_length_243_cov_7.360656_pilon to pilon.fasta [pilon] Writing NODE_14839_length_243_cov_7.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14839_length_243_cov_7.352459_pilon to pilon.fasta [pilon] Writing NODE_14840_length_243_cov_7.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14840_length_243_cov_7.336066_pilon to pilon.fasta [pilon] Writing NODE_14841_length_243_cov_7.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14841_length_243_cov_7.319672_pilon to pilon.fasta [pilon] Writing NODE_14842_length_243_cov_7.303279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14842_length_243_cov_7.303279_pilon to pilon.fasta [pilon] Writing NODE_14843_length_243_cov_7.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14843_length_243_cov_7.278689_pilon to pilon.fasta [pilon] Writing NODE_14844_length_243_cov_7.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14844_length_243_cov_7.262295_pilon to pilon.fasta [pilon] Writing NODE_14845_length_243_cov_7.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14845_length_243_cov_7.237705_pilon to pilon.fasta [pilon] Writing NODE_14846_length_243_cov_7.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14846_length_243_cov_7.237705_pilon to pilon.fasta [pilon] Writing NODE_14847_length_243_cov_7.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14847_length_243_cov_7.229508_pilon to pilon.fasta [pilon] Writing NODE_14848_length_243_cov_7.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14848_length_243_cov_7.229508_pilon to pilon.fasta [pilon] Writing NODE_14849_length_243_cov_7.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14849_length_243_cov_7.221311_pilon to pilon.fasta [pilon] Writing NODE_14850_length_243_cov_7.180328:1-243 changes to pilon.changes [pilon] Writing updated NODE_14850_length_243_cov_7.180328_pilon to pilon.fasta [pilon] Writing NODE_14851_length_243_cov_7.155738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14851_length_243_cov_7.155738_pilon to pilon.fasta [pilon] Writing NODE_14852_length_243_cov_7.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14852_length_243_cov_7.147541_pilon to pilon.fasta [pilon] Writing NODE_14853_length_243_cov_7.131148:1-243 changes to pilon.changes [pilon] Writing updated NODE_14853_length_243_cov_7.131148_pilon to pilon.fasta [pilon] Writing NODE_14854_length_243_cov_7.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14854_length_243_cov_7.122951_pilon to pilon.fasta [pilon] Writing NODE_14855_length_243_cov_7.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14855_length_243_cov_7.122951_pilon to pilon.fasta [pilon] Writing NODE_14856_length_243_cov_7.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14856_length_243_cov_7.122951_pilon to pilon.fasta [pilon] Writing NODE_14857_length_243_cov_7.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14857_length_243_cov_7.114754_pilon to pilon.fasta [pilon] Writing NODE_14858_length_243_cov_7.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14858_length_243_cov_7.090164_pilon to pilon.fasta [pilon] Writing NODE_14859_length_243_cov_7.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_14859_length_243_cov_7.065574_pilon to pilon.fasta [pilon] Writing NODE_14860_length_243_cov_7.057377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14860_length_243_cov_7.057377_pilon to pilon.fasta [pilon] Writing NODE_14861_length_243_cov_7.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14861_length_243_cov_7.032787_pilon to pilon.fasta [pilon] Writing NODE_14862_length_243_cov_7.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14862_length_243_cov_7.032787_pilon to pilon.fasta [pilon] Writing NODE_14863_length_243_cov_7.032787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14863_length_243_cov_7.032787_pilon to pilon.fasta [pilon] Writing NODE_14864_length_243_cov_7.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14864_length_243_cov_7.024590_pilon to pilon.fasta [pilon] Writing NODE_14865_length_243_cov_7.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14865_length_243_cov_7.024590_pilon to pilon.fasta [pilon] Writing NODE_14866_length_243_cov_7.016393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14866_length_243_cov_7.016393_pilon to pilon.fasta [pilon] Writing NODE_14867_length_243_cov_7.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14867_length_243_cov_7.008197_pilon to pilon.fasta [pilon] Writing NODE_14868_length_243_cov_7.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14868_length_243_cov_7.008197_pilon to pilon.fasta [pilon] Writing NODE_14869_length_243_cov_7.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_14869_length_243_cov_7.008197_pilon to pilon.fasta [pilon] Writing NODE_14870_length_243_cov_6.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14870_length_243_cov_6.991803_pilon to pilon.fasta [pilon] Writing NODE_14871_length_243_cov_6.983607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14871_length_243_cov_6.983607_pilon to pilon.fasta [pilon] Writing NODE_14872_length_243_cov_6.967213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14872_length_243_cov_6.967213_pilon to pilon.fasta [pilon] Writing NODE_14873_length_243_cov_6.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14873_length_243_cov_6.959016_pilon to pilon.fasta [pilon] Writing NODE_14874_length_243_cov_6.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14874_length_243_cov_6.942623_pilon to pilon.fasta [pilon] Writing NODE_14875_length_243_cov_6.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14875_length_243_cov_6.934426_pilon to pilon.fasta [pilon] Writing NODE_14876_length_243_cov_6.926230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14876_length_243_cov_6.926230_pilon to pilon.fasta [pilon] Writing NODE_14877_length_243_cov_6.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14877_length_243_cov_6.918033_pilon to pilon.fasta [pilon] Writing NODE_14878_length_243_cov_6.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14878_length_243_cov_6.918033_pilon to pilon.fasta [pilon] Writing NODE_14879_length_243_cov_6.918033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14879_length_243_cov_6.918033_pilon to pilon.fasta [pilon] Writing NODE_14880_length_243_cov_6.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14880_length_243_cov_6.909836_pilon to pilon.fasta [pilon] Writing NODE_14881_length_243_cov_6.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14881_length_243_cov_6.901639_pilon to pilon.fasta [pilon] Writing NODE_14882_length_243_cov_6.901639:1-243 changes to pilon.changes [pilon] Writing updated NODE_14882_length_243_cov_6.901639_pilon to pilon.fasta [pilon] Writing NODE_14883_length_243_cov_6.885246:1-243 changes to pilon.changes [pilon] Writing updated NODE_14883_length_243_cov_6.885246_pilon to pilon.fasta [pilon] Writing NODE_14884_length_243_cov_6.877049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14884_length_243_cov_6.877049_pilon to pilon.fasta [pilon] Writing NODE_14885_length_243_cov_6.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14885_length_243_cov_6.852459_pilon to pilon.fasta [pilon] Writing NODE_14886_length_243_cov_6.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14886_length_243_cov_6.836066_pilon to pilon.fasta [pilon] Writing NODE_14887_length_243_cov_6.836066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14887_length_243_cov_6.836066_pilon to pilon.fasta [pilon] Writing NODE_14888_length_243_cov_6.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14888_length_243_cov_6.803279_pilon to pilon.fasta [pilon] Writing NODE_14889_length_243_cov_6.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14889_length_243_cov_6.803279_pilon to pilon.fasta [pilon] Writing NODE_14890_length_243_cov_6.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14890_length_243_cov_6.786885_pilon to pilon.fasta [pilon] Writing NODE_14891_length_243_cov_6.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14891_length_243_cov_6.786885_pilon to pilon.fasta [pilon] Writing NODE_14892_length_243_cov_6.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14892_length_243_cov_6.786885_pilon to pilon.fasta [pilon] Writing NODE_14893_length_243_cov_6.786885:1-243 changes to pilon.changes [pilon] Writing updated NODE_14893_length_243_cov_6.786885_pilon to pilon.fasta [pilon] Writing NODE_14894_length_243_cov_6.778689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14894_length_243_cov_6.778689_pilon to pilon.fasta [pilon] Writing NODE_14895_length_243_cov_6.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14895_length_243_cov_6.762295_pilon to pilon.fasta [pilon] Writing NODE_14896_length_243_cov_6.754098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14896_length_243_cov_6.754098_pilon to pilon.fasta [pilon] Writing NODE_14897_length_243_cov_6.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14897_length_243_cov_6.745902_pilon to pilon.fasta [pilon] Writing NODE_14898_length_243_cov_6.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14898_length_243_cov_6.721311_pilon to pilon.fasta [pilon] Writing NODE_14899_length_243_cov_6.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14899_length_243_cov_6.721311_pilon to pilon.fasta [pilon] Writing NODE_14900_length_243_cov_6.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14900_length_243_cov_6.713115_pilon to pilon.fasta [pilon] Writing NODE_14901_length_243_cov_6.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14901_length_243_cov_6.713115_pilon to pilon.fasta [pilon] Writing NODE_14902_length_243_cov_6.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14902_length_243_cov_6.704918_pilon to pilon.fasta [pilon] Writing NODE_14903_length_243_cov_6.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14903_length_243_cov_6.688525_pilon to pilon.fasta [pilon] Writing NODE_14904_length_243_cov_6.688525:1-243 changes to pilon.changes [pilon] Writing updated NODE_14904_length_243_cov_6.688525_pilon to pilon.fasta [pilon] Writing NODE_14905_length_243_cov_6.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14905_length_243_cov_6.647541_pilon to pilon.fasta [pilon] Writing NODE_14906_length_243_cov_6.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14906_length_243_cov_6.606557_pilon to pilon.fasta [pilon] Writing NODE_14907_length_243_cov_6.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14907_length_243_cov_6.606557_pilon to pilon.fasta [pilon] Writing NODE_14908_length_243_cov_6.606557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14908_length_243_cov_6.606557_pilon to pilon.fasta [pilon] Writing NODE_14909_length_243_cov_6.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14909_length_243_cov_6.598361_pilon to pilon.fasta [pilon] Writing NODE_14910_length_243_cov_6.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14910_length_243_cov_6.573770_pilon to pilon.fasta [pilon] Writing NODE_14911_length_243_cov_6.573770:1-243 changes to pilon.changes [pilon] Writing updated NODE_14911_length_243_cov_6.573770_pilon to pilon.fasta [pilon] Writing NODE_14912_length_243_cov_6.565574:1-243 changes to pilon.changes [pilon] Writing updated NODE_14912_length_243_cov_6.565574_pilon to pilon.fasta [pilon] Writing NODE_14913_length_243_cov_6.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14913_length_243_cov_6.557377_pilon to pilon.fasta [pilon] Writing NODE_14914_length_243_cov_6.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14914_length_243_cov_6.540984_pilon to pilon.fasta [pilon] Writing NODE_14915_length_243_cov_6.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14915_length_243_cov_6.540984_pilon to pilon.fasta [pilon] Writing NODE_14916_length_243_cov_6.532787:1-243 changes to pilon.changes [pilon] Writing updated NODE_14916_length_243_cov_6.532787_pilon to pilon.fasta [pilon] Writing NODE_14917_length_243_cov_6.524590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14917_length_243_cov_6.524590_pilon to pilon.fasta [pilon] Writing NODE_14918_length_243_cov_6.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14918_length_243_cov_6.516393_pilon to pilon.fasta [pilon] Writing NODE_14919_length_243_cov_6.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14919_length_243_cov_6.500000_pilon to pilon.fasta [pilon] Writing NODE_14920_length_243_cov_6.500000:1-243 changes to pilon.changes [pilon] Writing updated NODE_14920_length_243_cov_6.500000_pilon to pilon.fasta [pilon] Writing NODE_14921_length_243_cov_6.491803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14921_length_243_cov_6.491803_pilon to pilon.fasta [pilon] Writing NODE_14922_length_243_cov_6.483607:1-243 changes to pilon.changes [pilon] Writing updated NODE_14922_length_243_cov_6.483607_pilon to pilon.fasta [pilon] Writing NODE_14923_length_243_cov_6.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14923_length_243_cov_6.475410_pilon to pilon.fasta [pilon] Writing NODE_14924_length_243_cov_6.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14924_length_243_cov_6.467213_pilon to pilon.fasta [pilon] Writing NODE_14925_length_243_cov_6.467213:1-243 changes to pilon.changes [pilon] Writing updated NODE_14925_length_243_cov_6.467213_pilon to pilon.fasta [pilon] Writing NODE_14926_length_243_cov_6.442623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14926_length_243_cov_6.442623_pilon to pilon.fasta [pilon] Writing NODE_14927_length_243_cov_6.426230:1-243 changes to pilon.changes [pilon] Writing updated NODE_14927_length_243_cov_6.426230_pilon to pilon.fasta [pilon] Writing NODE_14928_length_243_cov_6.409836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14928_length_243_cov_6.409836_pilon to pilon.fasta [pilon] Writing NODE_14929_length_243_cov_6.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14929_length_243_cov_6.393443_pilon to pilon.fasta [pilon] Writing NODE_14930_length_243_cov_6.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14930_length_243_cov_6.393443_pilon to pilon.fasta [pilon] Writing NODE_14931_length_243_cov_6.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_14931_length_243_cov_6.385246_pilon to pilon.fasta [pilon] Writing NODE_14932_length_243_cov_6.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_14932_length_243_cov_6.377049_pilon to pilon.fasta [pilon] Writing NODE_14933_length_243_cov_6.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_14933_length_243_cov_6.360656_pilon to pilon.fasta [pilon] Writing NODE_14934_length_243_cov_6.352459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14934_length_243_cov_6.352459_pilon to pilon.fasta [pilon] Writing NODE_14935_length_243_cov_6.336066:1-243 changes to pilon.changes [pilon] Writing updated NODE_14935_length_243_cov_6.336066_pilon to pilon.fasta [pilon] Writing NODE_14936_length_243_cov_6.327869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14936_length_243_cov_6.327869_pilon to pilon.fasta [pilon] Writing NODE_14937_length_243_cov_6.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_14937_length_243_cov_6.319672_pilon to pilon.fasta [pilon] Writing NODE_14938_length_243_cov_6.278689:1-243 changes to pilon.changes [pilon] Writing updated NODE_14938_length_243_cov_6.278689_pilon to pilon.fasta [pilon] Writing NODE_14939_length_243_cov_6.270492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14939_length_243_cov_6.270492_pilon to pilon.fasta [pilon] Writing NODE_14940_length_243_cov_6.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14940_length_243_cov_6.262295_pilon to pilon.fasta [pilon] Writing NODE_14941_length_243_cov_6.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_14941_length_243_cov_6.254098_pilon to pilon.fasta [pilon] Writing NODE_14942_length_243_cov_6.237705:1-243 changes to pilon.changes [pilon] Writing updated NODE_14942_length_243_cov_6.237705_pilon to pilon.fasta [pilon] Writing NODE_14943_length_243_cov_6.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_14943_length_243_cov_6.229508_pilon to pilon.fasta [pilon] Writing NODE_14944_length_243_cov_6.221311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14944_length_243_cov_6.221311_pilon to pilon.fasta [pilon] Writing NODE_14945_length_243_cov_6.163934:1-243 changes to pilon.changes [pilon] Writing updated NODE_14945_length_243_cov_6.163934_pilon to pilon.fasta [pilon] Writing NODE_14946_length_243_cov_6.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14946_length_243_cov_6.147541_pilon to pilon.fasta [pilon] Writing NODE_14947_length_243_cov_6.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14947_length_243_cov_6.139344_pilon to pilon.fasta [pilon] Writing NODE_14948_length_243_cov_6.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14948_length_243_cov_6.139344_pilon to pilon.fasta [pilon] Writing NODE_14949_length_243_cov_6.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_14949_length_243_cov_6.139344_pilon to pilon.fasta [pilon] Writing NODE_14950_length_243_cov_6.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14950_length_243_cov_6.122951_pilon to pilon.fasta [pilon] Writing NODE_14951_length_243_cov_6.114754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14951_length_243_cov_6.114754_pilon to pilon.fasta [pilon] Writing NODE_14952_length_243_cov_6.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_14952_length_243_cov_6.106557_pilon to pilon.fasta [pilon] Writing NODE_14953_length_243_cov_6.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14953_length_243_cov_6.098361_pilon to pilon.fasta [pilon] Writing NODE_14954_length_243_cov_6.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14954_length_243_cov_6.090164_pilon to pilon.fasta [pilon] Writing NODE_14955_length_243_cov_6.081967:1-243 changes to pilon.changes [pilon] Writing updated NODE_14955_length_243_cov_6.081967_pilon to pilon.fasta [pilon] Writing NODE_14956_length_243_cov_6.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14956_length_243_cov_6.040984_pilon to pilon.fasta [pilon] Writing NODE_14957_length_243_cov_6.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14957_length_243_cov_6.040984_pilon to pilon.fasta [pilon] Writing NODE_14958_length_243_cov_6.024590:1-243 changes to pilon.changes [pilon] Writing updated NODE_14958_length_243_cov_6.024590_pilon to pilon.fasta [pilon] Writing NODE_14959_length_243_cov_5.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14959_length_243_cov_5.991803_pilon to pilon.fasta [pilon] Writing NODE_14960_length_243_cov_5.991803:1-243 changes to pilon.changes [pilon] Writing updated NODE_14960_length_243_cov_5.991803_pilon to pilon.fasta [pilon] Writing NODE_14961_length_243_cov_5.975410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14961_length_243_cov_5.975410_pilon to pilon.fasta [pilon] Writing NODE_14962_length_243_cov_5.959016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14962_length_243_cov_5.959016_pilon to pilon.fasta [pilon] Writing NODE_14963_length_243_cov_5.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14963_length_243_cov_5.942623_pilon to pilon.fasta [pilon] Writing NODE_14964_length_243_cov_5.942623:1-243 changes to pilon.changes [pilon] Writing updated NODE_14964_length_243_cov_5.942623_pilon to pilon.fasta [pilon] Writing NODE_14965_length_243_cov_5.934426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14965_length_243_cov_5.934426_pilon to pilon.fasta [pilon] Writing NODE_14966_length_243_cov_5.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14966_length_243_cov_5.909836_pilon to pilon.fasta [pilon] Writing NODE_14967_length_243_cov_5.909836:1-243 changes to pilon.changes [pilon] Writing updated NODE_14967_length_243_cov_5.909836_pilon to pilon.fasta [pilon] Writing NODE_14968_length_243_cov_5.852459:1-243 changes to pilon.changes [pilon] Writing updated NODE_14968_length_243_cov_5.852459_pilon to pilon.fasta [pilon] Writing NODE_14969_length_243_cov_5.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14969_length_243_cov_5.827869_pilon to pilon.fasta [pilon] Writing NODE_14970_length_243_cov_5.827869:1-243 changes to pilon.changes [pilon] Writing updated NODE_14970_length_243_cov_5.827869_pilon to pilon.fasta [pilon] Writing NODE_14971_length_243_cov_5.803279:1-243 changes to pilon.changes [pilon] Writing updated NODE_14971_length_243_cov_5.803279_pilon to pilon.fasta [pilon] Writing NODE_14972_length_243_cov_5.795082:1-243 changes to pilon.changes [pilon] Writing updated NODE_14972_length_243_cov_5.795082_pilon to pilon.fasta [pilon] Writing NODE_14973_length_243_cov_5.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14973_length_243_cov_5.770492_pilon to pilon.fasta [pilon] Writing NODE_14974_length_243_cov_5.770492:1-243 changes to pilon.changes [pilon] Writing updated NODE_14974_length_243_cov_5.770492_pilon to pilon.fasta [pilon] Writing NODE_14975_length_243_cov_5.762295:1-243 changes to pilon.changes [pilon] Writing updated NODE_14975_length_243_cov_5.762295_pilon to pilon.fasta [pilon] Writing NODE_14976_length_243_cov_5.745902:1-243 changes to pilon.changes [pilon] Writing updated NODE_14976_length_243_cov_5.745902_pilon to pilon.fasta [pilon] Writing NODE_14977_length_243_cov_5.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14977_length_243_cov_5.721311_pilon to pilon.fasta [pilon] Writing NODE_14978_length_243_cov_5.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14978_length_243_cov_5.721311_pilon to pilon.fasta [pilon] Writing NODE_14979_length_243_cov_5.721311:1-243 changes to pilon.changes [pilon] Writing updated NODE_14979_length_243_cov_5.721311_pilon to pilon.fasta [pilon] Writing NODE_14980_length_243_cov_5.713115:1-243 changes to pilon.changes [pilon] Writing updated NODE_14980_length_243_cov_5.713115_pilon to pilon.fasta [pilon] Writing NODE_14981_length_243_cov_5.704918:1-243 changes to pilon.changes [pilon] Writing updated NODE_14981_length_243_cov_5.704918_pilon to pilon.fasta [pilon] Writing NODE_14982_length_243_cov_5.696721:1-243 changes to pilon.changes [pilon] Writing updated NODE_14982_length_243_cov_5.696721_pilon to pilon.fasta [pilon] Writing NODE_14983_length_243_cov_5.655738:1-243 changes to pilon.changes [pilon] Writing updated NODE_14983_length_243_cov_5.655738_pilon to pilon.fasta [pilon] Writing NODE_14984_length_243_cov_5.647541:1-243 changes to pilon.changes [pilon] Writing updated NODE_14984_length_243_cov_5.647541_pilon to pilon.fasta [pilon] Writing NODE_14985_length_243_cov_5.622951:1-243 changes to pilon.changes [pilon] Writing updated NODE_14985_length_243_cov_5.622951_pilon to pilon.fasta [pilon] Writing NODE_14986_length_243_cov_5.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14986_length_243_cov_5.614754_pilon to pilon.fasta [pilon] Writing NODE_14987_length_243_cov_5.614754:1-243 changes to pilon.changes [pilon] Writing updated NODE_14987_length_243_cov_5.614754_pilon to pilon.fasta [pilon] Writing NODE_14988_length_243_cov_5.598361:1-243 changes to pilon.changes [pilon] Writing updated NODE_14988_length_243_cov_5.598361_pilon to pilon.fasta [pilon] Writing NODE_14989_length_243_cov_5.590164:1-243 changes to pilon.changes [pilon] Writing updated NODE_14989_length_243_cov_5.590164_pilon to pilon.fasta [pilon] Writing NODE_14990_length_243_cov_5.557377:1-243 changes to pilon.changes [pilon] Writing updated NODE_14990_length_243_cov_5.557377_pilon to pilon.fasta [pilon] Writing NODE_14991_length_243_cov_5.549180:1-243 changes to pilon.changes [pilon] Writing updated NODE_14991_length_243_cov_5.549180_pilon to pilon.fasta [pilon] Writing NODE_14992_length_243_cov_5.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14992_length_243_cov_5.540984_pilon to pilon.fasta [pilon] Writing NODE_14993_length_243_cov_5.540984:1-243 changes to pilon.changes [pilon] Writing updated NODE_14993_length_243_cov_5.540984_pilon to pilon.fasta [pilon] Writing NODE_14994_length_243_cov_5.516393:1-243 changes to pilon.changes [pilon] Writing updated NODE_14994_length_243_cov_5.516393_pilon to pilon.fasta [pilon] Writing NODE_14995_length_243_cov_5.475410:1-243 changes to pilon.changes [pilon] Writing updated NODE_14995_length_243_cov_5.475410_pilon to pilon.fasta [pilon] Writing NODE_14996_length_243_cov_5.459016:1-243 changes to pilon.changes [pilon] Writing updated NODE_14996_length_243_cov_5.459016_pilon to pilon.fasta [pilon] Writing NODE_14997_length_243_cov_5.434426:1-243 changes to pilon.changes [pilon] Writing updated NODE_14997_length_243_cov_5.434426_pilon to pilon.fasta [pilon] Writing NODE_14998_length_243_cov_5.418033:1-243 changes to pilon.changes [pilon] Writing updated NODE_14998_length_243_cov_5.418033_pilon to pilon.fasta [pilon] Writing NODE_14999_length_243_cov_5.393443:1-243 changes to pilon.changes [pilon] Writing updated NODE_14999_length_243_cov_5.393443_pilon to pilon.fasta [pilon] Writing NODE_15000_length_243_cov_5.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_15000_length_243_cov_5.385246_pilon to pilon.fasta [pilon] Writing NODE_15001_length_243_cov_5.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_15001_length_243_cov_5.385246_pilon to pilon.fasta [pilon] Writing NODE_15002_length_243_cov_5.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_15002_length_243_cov_5.385246_pilon to pilon.fasta [pilon] Writing NODE_15003_length_243_cov_5.385246:1-243 changes to pilon.changes [pilon] Writing updated NODE_15003_length_243_cov_5.385246_pilon to pilon.fasta [pilon] Writing NODE_15004_length_243_cov_5.377049:1-243 changes to pilon.changes [pilon] Writing updated NODE_15004_length_243_cov_5.377049_pilon to pilon.fasta [pilon] Writing NODE_15005_length_243_cov_5.360656:1-243 changes to pilon.changes [pilon] Writing updated NODE_15005_length_243_cov_5.360656_pilon to pilon.fasta [pilon] Writing NODE_15006_length_243_cov_5.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_15006_length_243_cov_5.344262_pilon to pilon.fasta [pilon] Writing NODE_15007_length_243_cov_5.344262:1-243 changes to pilon.changes [pilon] Writing updated NODE_15007_length_243_cov_5.344262_pilon to pilon.fasta [pilon] Writing NODE_15008_length_243_cov_5.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_15008_length_243_cov_5.319672_pilon to pilon.fasta [pilon] Writing NODE_15009_length_243_cov_5.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_15009_length_243_cov_5.319672_pilon to pilon.fasta [pilon] Writing NODE_15010_length_243_cov_5.319672:1-243 changes to pilon.changes [pilon] Writing updated NODE_15010_length_243_cov_5.319672_pilon to pilon.fasta [pilon] Writing NODE_15011_length_243_cov_5.311475:1-243 changes to pilon.changes [pilon] Writing updated NODE_15011_length_243_cov_5.311475_pilon to pilon.fasta [pilon] Writing NODE_15012_length_243_cov_5.295082:1-243 changes to pilon.changes [pilon] Writing updated NODE_15012_length_243_cov_5.295082_pilon to pilon.fasta [pilon] Writing NODE_15013_length_243_cov_5.286885:1-243 changes to pilon.changes [pilon] Writing updated NODE_15013_length_243_cov_5.286885_pilon to pilon.fasta [pilon] Writing NODE_15014_length_243_cov_5.262295:1-243 changes to pilon.changes [pilon] Writing updated NODE_15014_length_243_cov_5.262295_pilon to pilon.fasta [pilon] Writing NODE_15015_length_243_cov_5.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_15015_length_243_cov_5.254098_pilon to pilon.fasta [pilon] Writing NODE_15016_length_243_cov_5.254098:1-243 changes to pilon.changes [pilon] Writing updated NODE_15016_length_243_cov_5.254098_pilon to pilon.fasta [pilon] Writing NODE_15017_length_243_cov_5.245902:1-243 changes to pilon.changes [pilon] Writing updated NODE_15017_length_243_cov_5.245902_pilon to pilon.fasta [pilon] Writing NODE_15018_length_243_cov_5.229508:1-243 changes to pilon.changes [pilon] Writing updated NODE_15018_length_243_cov_5.229508_pilon to pilon.fasta [pilon] Writing NODE_15019_length_243_cov_5.204918:1-243 changes to pilon.changes [pilon] Writing updated NODE_15019_length_243_cov_5.204918_pilon to pilon.fasta [pilon] Writing NODE_15020_length_243_cov_5.196721:1-243 changes to pilon.changes [pilon] Writing updated NODE_15020_length_243_cov_5.196721_pilon to pilon.fasta [pilon] Writing NODE_15021_length_243_cov_5.188525:1-243 changes to pilon.changes [pilon] Writing updated NODE_15021_length_243_cov_5.188525_pilon to pilon.fasta [pilon] Writing NODE_15022_length_243_cov_5.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_15022_length_243_cov_5.147541_pilon to pilon.fasta [pilon] Writing NODE_15023_length_243_cov_5.147541:1-243 changes to pilon.changes [pilon] Writing updated NODE_15023_length_243_cov_5.147541_pilon to pilon.fasta [pilon] Writing NODE_15024_length_243_cov_5.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_15024_length_243_cov_5.139344_pilon to pilon.fasta [pilon] Writing NODE_15025_length_243_cov_5.139344:1-243 changes to pilon.changes [pilon] Writing updated NODE_15025_length_243_cov_5.139344_pilon to pilon.fasta [pilon] Writing NODE_15026_length_243_cov_5.122951:1-243 changes to pilon.changes [pilon] Writing updated NODE_15026_length_243_cov_5.122951_pilon to pilon.fasta [pilon] Writing NODE_15027_length_243_cov_5.106557:1-243 changes to pilon.changes [pilon] Writing updated NODE_15027_length_243_cov_5.106557_pilon to pilon.fasta [pilon] Writing NODE_15028_length_243_cov_5.098361:1-243 changes to pilon.changes [pilon] Writing updated NODE_15028_length_243_cov_5.098361_pilon to pilon.fasta [pilon] Writing NODE_15029_length_243_cov_5.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_15029_length_243_cov_5.090164_pilon to pilon.fasta [pilon] Writing NODE_15030_length_243_cov_5.090164:1-243 changes to pilon.changes [pilon] Writing updated NODE_15030_length_243_cov_5.090164_pilon to pilon.fasta [pilon] Writing NODE_15031_length_243_cov_5.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_15031_length_243_cov_5.073770_pilon to pilon.fasta [pilon] Writing NODE_15032_length_243_cov_5.073770:1-243 changes to pilon.changes [pilon] Writing updated NODE_15032_length_243_cov_5.073770_pilon to pilon.fasta [pilon] Writing NODE_15033_length_243_cov_5.065574:1-243 changes to pilon.changes [pilon] Writing updated NODE_15033_length_243_cov_5.065574_pilon to pilon.fasta [pilon] Writing NODE_15034_length_243_cov_5.049180:1-243 changes to pilon.changes [pilon] Writing updated NODE_15034_length_243_cov_5.049180_pilon to pilon.fasta [pilon] Writing NODE_15035_length_243_cov_5.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_15035_length_243_cov_5.040984_pilon to pilon.fasta [pilon] Writing NODE_15036_length_243_cov_5.040984:1-243 changes to pilon.changes [pilon] Writing updated NODE_15036_length_243_cov_5.040984_pilon to pilon.fasta [pilon] Writing NODE_15037_length_243_cov_5.008197:1-243 changes to pilon.changes [pilon] Writing updated NODE_15037_length_243_cov_5.008197_pilon to pilon.fasta [pilon] Writing NODE_15038_length_242_cov_25.140496:1-242 changes to pilon.changes [pilon] Writing updated NODE_15038_length_242_cov_25.140496_pilon to pilon.fasta [pilon] Writing NODE_15039_length_242_cov_18.975207:1-242 changes to pilon.changes [pilon] Writing updated NODE_15039_length_242_cov_18.975207_pilon to pilon.fasta [pilon] Writing NODE_15040_length_242_cov_16.462810:1-242 changes to pilon.changes [pilon] Writing updated NODE_15040_length_242_cov_16.462810_pilon to pilon.fasta [pilon] Writing NODE_15041_length_242_cov_12.049587:1-242 changes to pilon.changes [pilon] Writing updated NODE_15041_length_242_cov_12.049587_pilon to pilon.fasta [pilon] Writing NODE_15042_length_242_cov_2.404959:1-242 changes to pilon.changes [pilon] Writing updated NODE_15042_length_242_cov_2.404959_pilon to pilon.fasta [pilon] Writing NODE_15043_length_241_cov_28.133333:1-241 changes to pilon.changes [pilon] Writing updated NODE_15043_length_241_cov_28.133333_pilon to pilon.fasta [pilon] Writing NODE_15044_length_241_cov_27.008333:1-241 changes to pilon.changes [pilon] Writing updated NODE_15044_length_241_cov_27.008333_pilon to pilon.fasta [pilon] Writing NODE_15045_length_241_cov_20.158333:1-241 changes to pilon.changes [pilon] Writing updated NODE_15045_length_241_cov_20.158333_pilon to pilon.fasta [pilon] Writing NODE_15046_length_241_cov_19.766667:1-241 changes to pilon.changes [pilon] Writing updated NODE_15046_length_241_cov_19.766667_pilon to pilon.fasta [pilon] Writing NODE_15047_length_241_cov_13.191667:1-241 changes to pilon.changes [pilon] Writing updated NODE_15047_length_241_cov_13.191667_pilon to pilon.fasta [pilon] Writing NODE_15048_length_241_cov_12.816667:1-241 changes to pilon.changes [pilon] Writing updated NODE_15048_length_241_cov_12.816667_pilon to pilon.fasta [pilon] Writing NODE_15049_length_240_cov_120.428571:1-240 changes to pilon.changes [pilon] Writing updated NODE_15049_length_240_cov_120.428571_pilon to pilon.fasta [pilon] Writing NODE_15050_length_240_cov_42.067227:1-240 changes to pilon.changes [pilon] Writing updated NODE_15050_length_240_cov_42.067227_pilon to pilon.fasta [pilon] Writing NODE_15051_length_240_cov_24.647059:1-240 changes to pilon.changes [pilon] Writing updated NODE_15051_length_240_cov_24.647059_pilon to pilon.fasta [pilon] Writing NODE_15052_length_240_cov_19.277311:1-240 changes to pilon.changes [pilon] Writing updated NODE_15052_length_240_cov_19.277311_pilon to pilon.fasta [pilon] Writing NODE_15053_length_240_cov_13.747899:1-240 changes to pilon.changes [pilon] Writing updated NODE_15053_length_240_cov_13.747899_pilon to pilon.fasta [pilon] Writing NODE_15054_length_240_cov_12.630252:1-240 changes to pilon.changes [pilon] Writing updated NODE_15054_length_240_cov_12.630252_pilon to pilon.fasta [pilon] Writing NODE_15055_length_240_cov_7.924370:1-240 changes to pilon.changes [pilon] Writing updated NODE_15055_length_240_cov_7.924370_pilon to pilon.fasta [pilon] Writing NODE_15056_length_240_cov_0.823529:1-240 changes to pilon.changes [pilon] Writing updated NODE_15056_length_240_cov_0.823529_pilon to pilon.fasta [pilon] Writing NODE_15057_length_239_cov_78.516949:1-239 changes to pilon.changes [pilon] Writing updated NODE_15057_length_239_cov_78.516949_pilon to pilon.fasta [pilon] Writing NODE_15058_length_239_cov_53.491525:1-239 changes to pilon.changes [pilon] Writing updated NODE_15058_length_239_cov_53.491525_pilon to pilon.fasta [pilon] Writing NODE_15059_length_239_cov_30.677966:1-239 changes to pilon.changes [pilon] Writing updated NODE_15059_length_239_cov_30.677966_pilon to pilon.fasta [pilon] Writing NODE_15060_length_239_cov_23.440678:1-239 changes to pilon.changes [pilon] Writing updated NODE_15060_length_239_cov_23.440678_pilon to pilon.fasta [pilon] Writing NODE_15061_length_239_cov_20.661017:1-239 changes to pilon.changes [pilon] Writing updated NODE_15061_length_239_cov_20.661017_pilon to pilon.fasta [pilon] Writing NODE_15062_length_238_cov_57.769231:1-238 changes to pilon.changes [pilon] Writing updated NODE_15062_length_238_cov_57.769231_pilon to pilon.fasta [pilon] Writing NODE_15063_length_238_cov_29.581197:1-238 changes to pilon.changes [pilon] Writing updated NODE_15063_length_238_cov_29.581197_pilon to pilon.fasta [pilon] Writing NODE_15064_length_238_cov_23.401709:1-238 changes to pilon.changes [pilon] Writing updated NODE_15064_length_238_cov_23.401709_pilon to pilon.fasta [pilon] Writing NODE_15065_length_238_cov_14.094017:1-238 changes to pilon.changes [pilon] Writing updated NODE_15065_length_238_cov_14.094017_pilon to pilon.fasta [pilon] Writing NODE_15066_length_237_cov_27.706897:1-237 changes to pilon.changes [pilon] Writing updated NODE_15066_length_237_cov_27.706897_pilon to pilon.fasta [pilon] Writing NODE_15067_length_237_cov_27.155172:1-237 changes to pilon.changes [pilon] Writing updated NODE_15067_length_237_cov_27.155172_pilon to pilon.fasta [pilon] Writing NODE_15068_length_237_cov_26.775862:1-237 changes to pilon.changes [pilon] Writing updated NODE_15068_length_237_cov_26.775862_pilon to pilon.fasta [pilon] Writing NODE_15069_length_237_cov_25.681034:1-237 changes to pilon.changes [pilon] Writing updated NODE_15069_length_237_cov_25.681034_pilon to pilon.fasta [pilon] Writing NODE_15070_length_237_cov_12.758621:1-237 changes to pilon.changes [pilon] Writing updated NODE_15070_length_237_cov_12.758621_pilon to pilon.fasta [pilon] Writing NODE_15071_length_236_cov_27.973913:1-236 changes to pilon.changes [pilon] Writing updated NODE_15071_length_236_cov_27.973913_pilon to pilon.fasta [pilon] Writing NODE_15072_length_236_cov_25.965217:1-236 changes to pilon.changes [pilon] Writing updated NODE_15072_length_236_cov_25.965217_pilon to pilon.fasta [pilon] Writing NODE_15073_length_236_cov_17.843478:1-236 changes to pilon.changes [pilon] Writing updated NODE_15073_length_236_cov_17.843478_pilon to pilon.fasta [pilon] Writing NODE_15074_length_236_cov_13.939130:1-236 changes to pilon.changes [pilon] Writing updated NODE_15074_length_236_cov_13.939130_pilon to pilon.fasta [pilon] Writing NODE_15075_length_236_cov_4.400000:1-236 changes to pilon.changes [pilon] Writing updated NODE_15075_length_236_cov_4.400000_pilon to pilon.fasta [pilon] Writing NODE_15076_length_235_cov_9.780702:1-235 changes to pilon.changes [pilon] Writing updated NODE_15076_length_235_cov_9.780702_pilon to pilon.fasta [pilon] Writing NODE_15077_length_235_cov_8.842105:1-235 changes to pilon.changes [pilon] Writing updated NODE_15077_length_235_cov_8.842105_pilon to pilon.fasta [pilon] Writing NODE_15078_length_234_cov_15.362832:1-234 changes to pilon.changes [pilon] Writing updated NODE_15078_length_234_cov_15.362832_pilon to pilon.fasta [pilon] Writing NODE_15079_length_234_cov_14.787611:1-234 changes to pilon.changes [pilon] Writing updated NODE_15079_length_234_cov_14.787611_pilon to pilon.fasta [pilon] Writing NODE_15080_length_234_cov_7.150442:1-234 changes to pilon.changes [pilon] Writing updated NODE_15080_length_234_cov_7.150442_pilon to pilon.fasta [pilon] Writing NODE_15081_length_233_cov_17.723214:1-233 changes to pilon.changes [pilon] Writing updated NODE_15081_length_233_cov_17.723214_pilon to pilon.fasta [pilon] Writing NODE_15082_length_233_cov_6.892857:1-233 changes to pilon.changes [pilon] Writing updated NODE_15082_length_233_cov_6.892857_pilon to pilon.fasta [pilon] Writing NODE_15083_length_233_cov_2.562500:1-233 changes to pilon.changes [pilon] Writing updated NODE_15083_length_233_cov_2.562500_pilon to pilon.fasta [pilon] Writing NODE_15084_length_231_cov_29.109091:1-231 changes to pilon.changes [pilon] Writing updated NODE_15084_length_231_cov_29.109091_pilon to pilon.fasta [pilon] Writing NODE_15085_length_231_cov_7.581818:1-231 changes to pilon.changes [pilon] Writing updated NODE_15085_length_231_cov_7.581818_pilon to pilon.fasta [pilon] Writing NODE_15086_length_230_cov_64.174312:1-230 changes to pilon.changes [pilon] Writing updated NODE_15086_length_230_cov_64.174312_pilon to pilon.fasta [pilon] Writing NODE_15087_length_230_cov_50.201835:1-230 changes to pilon.changes [pilon] Writing updated NODE_15087_length_230_cov_50.201835_pilon to pilon.fasta [pilon] Writing NODE_15088_length_230_cov_5.229358:1-230 changes to pilon.changes [pilon] Writing updated NODE_15088_length_230_cov_5.229358_pilon to pilon.fasta [pilon] Writing NODE_15089_length_229_cov_5.796296:1-229 changes to pilon.changes [pilon] Writing updated NODE_15089_length_229_cov_5.796296_pilon to pilon.fasta [pilon] Writing NODE_15090_length_227_cov_53.207547:1-227 changes to pilon.changes [pilon] Writing updated NODE_15090_length_227_cov_53.207547_pilon to pilon.fasta [pilon] Writing NODE_15091_length_226_cov_5.142857:1-226 changes to pilon.changes [pilon] Writing updated NODE_15091_length_226_cov_5.142857_pilon to pilon.fasta [pilon] Writing NODE_15092_length_225_cov_10.451923:1-225 changes to pilon.changes [pilon] Writing updated NODE_15092_length_225_cov_10.451923_pilon to pilon.fasta [pilon] Writing NODE_15093_length_225_cov_10.144231:1-225 changes to pilon.changes [pilon] Writing updated NODE_15093_length_225_cov_10.144231_pilon to pilon.fasta [pilon] Writing NODE_15094_length_224_cov_26.980583:1-224 changes to pilon.changes [pilon] Writing updated NODE_15094_length_224_cov_26.980583_pilon to pilon.fasta [pilon] Writing NODE_15095_length_224_cov_7.533981:1-224 changes to pilon.changes [pilon] Writing updated NODE_15095_length_224_cov_7.533981_pilon to pilon.fasta [pilon] Writing NODE_15096_length_223_cov_47.813725:1-223 changes to pilon.changes [pilon] Writing updated NODE_15096_length_223_cov_47.813725_pilon to pilon.fasta [pilon] Writing NODE_15097_length_223_cov_6.862745:1-223 changes to pilon.changes [pilon] Writing updated NODE_15097_length_223_cov_6.862745_pilon to pilon.fasta [pilon] Writing NODE_15098_length_222_cov_6.920792:1-222 changes to pilon.changes [pilon] Writing updated NODE_15098_length_222_cov_6.920792_pilon to pilon.fasta [pilon] Writing NODE_15099_length_221_cov_34.760000:1-221 changes to pilon.changes [pilon] Writing updated NODE_15099_length_221_cov_34.760000_pilon to pilon.fasta [pilon] Writing NODE_15100_length_221_cov_22.910000:1-221 changes to pilon.changes [pilon] Writing updated NODE_15100_length_221_cov_22.910000_pilon to pilon.fasta [pilon] Writing NODE_15101_length_221_cov_5.170000:1-221 changes to pilon.changes [pilon] Writing updated NODE_15101_length_221_cov_5.170000_pilon to pilon.fasta [pilon] Writing NODE_15102_length_220_cov_57.494949:1-220 changes to pilon.changes [pilon] Writing updated NODE_15102_length_220_cov_57.494949_pilon to pilon.fasta [pilon] Writing NODE_15103_length_220_cov_26.909091:1-220 changes to pilon.changes [pilon] Writing updated NODE_15103_length_220_cov_26.909091_pilon to pilon.fasta [pilon] Writing NODE_15104_length_220_cov_3.848485:1-220 changes to pilon.changes [pilon] Writing updated NODE_15104_length_220_cov_3.848485_pilon to pilon.fasta [pilon] Writing NODE_15105_length_218_cov_6.618557:1-218 changes to pilon.changes [pilon] Writing updated NODE_15105_length_218_cov_6.618557_pilon to pilon.fasta [pilon] Writing NODE_15106_length_217_cov_26.000000:1-217 changes to pilon.changes [pilon] Writing updated NODE_15106_length_217_cov_26.000000_pilon to pilon.fasta [pilon] Writing NODE_15107_length_217_cov_6.197917:1-217 changes to pilon.changes [pilon] Writing updated NODE_15107_length_217_cov_6.197917_pilon to pilon.fasta [pilon] Writing NODE_15108_length_217_cov_4.479167:1-217 changes to pilon.changes [pilon] Writing updated NODE_15108_length_217_cov_4.479167_pilon to pilon.fasta [pilon] Writing NODE_15109_length_217_cov_3.739583:1-217 changes to pilon.changes [pilon] Writing updated NODE_15109_length_217_cov_3.739583_pilon to pilon.fasta [pilon] Writing NODE_15110_length_217_cov_1.927083:1-217 changes to pilon.changes [pilon] Writing updated NODE_15110_length_217_cov_1.927083_pilon to pilon.fasta [pilon] Writing NODE_15111_length_216_cov_55.463158:1-216 changes to pilon.changes [pilon] Writing updated NODE_15111_length_216_cov_55.463158_pilon to pilon.fasta [pilon] Writing NODE_15112_length_216_cov_6.757895:1-216 changes to pilon.changes [pilon] Writing updated NODE_15112_length_216_cov_6.757895_pilon to pilon.fasta [pilon] Writing NODE_15113_length_214_cov_32.569892:1-214 changes to pilon.changes [pilon] Writing updated NODE_15113_length_214_cov_32.569892_pilon to pilon.fasta [pilon] Writing NODE_15114_length_214_cov_1.838710:1-214 changes to pilon.changes [pilon] Writing updated NODE_15114_length_214_cov_1.838710_pilon to pilon.fasta [pilon] Writing NODE_15115_length_213_cov_21.358696:1-213 changes to pilon.changes [pilon] Writing updated NODE_15115_length_213_cov_21.358696_pilon to pilon.fasta [pilon] Writing NODE_15116_length_213_cov_10.304348:1-213 changes to pilon.changes [pilon] Writing updated NODE_15116_length_213_cov_10.304348_pilon to pilon.fasta [pilon] Writing NODE_15117_length_213_cov_3.717391:1-213 changes to pilon.changes [pilon] Writing updated NODE_15117_length_213_cov_3.717391_pilon to pilon.fasta [pilon] Writing NODE_15118_length_212_cov_136.835165:1-212 changes to pilon.changes [pilon] Writing updated NODE_15118_length_212_cov_136.835165_pilon to pilon.fasta [pilon] Writing NODE_15119_length_212_cov_3.450549:1-212 changes to pilon.changes [pilon] Writing updated NODE_15119_length_212_cov_3.450549_pilon to pilon.fasta [pilon] Writing NODE_15120_length_211_cov_61.155556:1-211 changes to pilon.changes [pilon] Writing updated NODE_15120_length_211_cov_61.155556_pilon to pilon.fasta [pilon] Writing NODE_15121_length_208_cov_5.436782:1-208 changes to pilon.changes [pilon] Writing updated NODE_15121_length_208_cov_5.436782_pilon to pilon.fasta [pilon] Writing NODE_15122_length_207_cov_73.523256:1-207 changes to pilon.changes [pilon] Writing updated NODE_15122_length_207_cov_73.523256_pilon to pilon.fasta [pilon] Writing NODE_15123_length_207_cov_26.965116:1-207 changes to pilon.changes [pilon] Writing updated NODE_15123_length_207_cov_26.965116_pilon to pilon.fasta [pilon] Writing NODE_15124_length_207_cov_5.918605:1-207 changes to pilon.changes [pilon] Writing updated NODE_15124_length_207_cov_5.918605_pilon to pilon.fasta [pilon] Writing NODE_15125_length_206_cov_11.388235:1-206 changes to pilon.changes [pilon] Writing updated NODE_15125_length_206_cov_11.388235_pilon to pilon.fasta [pilon] Writing NODE_15126_length_206_cov_5.317647:1-206 changes to pilon.changes [pilon] Writing updated NODE_15126_length_206_cov_5.317647_pilon to pilon.fasta [pilon] Writing NODE_15127_length_204_cov_26.602410:1-204 changes to pilon.changes [pilon] Writing updated NODE_15127_length_204_cov_26.602410_pilon to pilon.fasta [pilon] Writing NODE_15128_length_203_cov_26.329268:1-203 changes to pilon.changes [pilon] Writing updated NODE_15128_length_203_cov_26.329268_pilon to pilon.fasta [pilon] Writing NODE_15129_length_202_cov_61.395062:1-202 changes to pilon.changes [pilon] Writing updated NODE_15129_length_202_cov_61.395062_pilon to pilon.fasta [pilon] Writing NODE_15130_length_202_cov_6.567901:1-202 changes to pilon.changes [pilon] Writing updated NODE_15130_length_202_cov_6.567901_pilon to pilon.fasta [pilon] Writing NODE_15131_length_202_cov_6.000000:1-202 changes to pilon.changes [pilon] Writing updated NODE_15131_length_202_cov_6.000000_pilon to pilon.fasta [pilon] Writing NODE_15132_length_201_cov_8.362500:1-201 changes to pilon.changes [pilon] Writing updated NODE_15132_length_201_cov_8.362500_pilon to pilon.fasta [pilon] Writing NODE_15133_length_201_cov_2.962500:1-201 changes to pilon.changes [pilon] Writing updated NODE_15133_length_201_cov_2.962500_pilon to pilon.fasta [pilon] Writing NODE_15134_length_200_cov_2.240506:1-200 changes to pilon.changes [pilon] Writing updated NODE_15134_length_200_cov_2.240506_pilon to pilon.fasta [pilon] Writing NODE_15135_length_199_cov_8.256410:1-199 changes to pilon.changes [pilon] Writing updated NODE_15135_length_199_cov_8.256410_pilon to pilon.fasta [pilon] Writing NODE_15136_length_198_cov_18.688312:1-198 changes to pilon.changes [pilon] Writing updated NODE_15136_length_198_cov_18.688312_pilon to pilon.fasta [pilon] Writing NODE_15137_length_198_cov_5.987013:1-198 changes to pilon.changes [pilon] Writing updated NODE_15137_length_198_cov_5.987013_pilon to pilon.fasta [pilon] Writing NODE_15138_length_198_cov_5.935065:1-198 changes to pilon.changes [pilon] Writing updated NODE_15138_length_198_cov_5.935065_pilon to pilon.fasta [pilon] Writing NODE_15139_length_198_cov_3.116883:1-198 changes to pilon.changes [pilon] Writing updated NODE_15139_length_198_cov_3.116883_pilon to pilon.fasta [pilon] Writing NODE_15140_length_197_cov_6.276316:1-197 changes to pilon.changes [pilon] Writing updated NODE_15140_length_197_cov_6.276316_pilon to pilon.fasta [pilon] Writing NODE_15141_length_196_cov_52.706667:1-196 changes to pilon.changes [pilon] Writing updated NODE_15141_length_196_cov_52.706667_pilon to pilon.fasta [pilon] Writing NODE_15142_length_196_cov_5.040000:1-196 changes to pilon.changes [pilon] Writing updated NODE_15142_length_196_cov_5.040000_pilon to pilon.fasta [pilon] Writing NODE_15143_length_195_cov_6.000000:1-195 changes to pilon.changes [pilon] Writing updated NODE_15143_length_195_cov_6.000000_pilon to pilon.fasta [pilon] Writing NODE_15144_length_194_cov_37.876712:1-194 changes to pilon.changes [pilon] Writing updated NODE_15144_length_194_cov_37.876712_pilon to pilon.fasta [pilon] Writing NODE_15145_length_194_cov_28.123288:1-194 changes to pilon.changes [pilon] Writing updated NODE_15145_length_194_cov_28.123288_pilon to pilon.fasta [pilon] Writing NODE_15146_length_194_cov_26.301370:1-194 changes to pilon.changes [pilon] Writing updated NODE_15146_length_194_cov_26.301370_pilon to pilon.fasta [pilon] Writing NODE_15147_length_194_cov_5.397260:1-194 changes to pilon.changes [pilon] Writing updated NODE_15147_length_194_cov_5.397260_pilon to pilon.fasta [pilon] Writing NODE_15148_length_191_cov_56.142857:1-191 changes to pilon.changes [pilon] Writing updated NODE_15148_length_191_cov_56.142857_pilon to pilon.fasta [pilon] Writing NODE_15149_length_191_cov_31.257143:1-191 changes to pilon.changes [pilon] Writing updated NODE_15149_length_191_cov_31.257143_pilon to pilon.fasta [pilon] Writing NODE_15150_length_190_cov_8.304348:1-190 changes to pilon.changes [pilon] Writing updated NODE_15150_length_190_cov_8.304348_pilon to pilon.fasta [pilon] Writing NODE_15151_length_190_cov_6.782609:1-190 changes to pilon.changes [pilon] Writing updated NODE_15151_length_190_cov_6.782609_pilon to pilon.fasta [pilon] Writing NODE_15152_length_189_cov_10.073529:1-189 changes to pilon.changes [pilon] Writing updated NODE_15152_length_189_cov_10.073529_pilon to pilon.fasta [pilon] Writing NODE_15153_length_189_cov_6.647059:1-189 changes to pilon.changes [pilon] Writing updated NODE_15153_length_189_cov_6.647059_pilon to pilon.fasta [pilon] Writing NODE_15154_length_188_cov_1.000000:1-188 changes to pilon.changes [pilon] Writing updated NODE_15154_length_188_cov_1.000000_pilon to pilon.fasta [pilon] Writing NODE_15155_length_187_cov_5.636364:1-187 changes to pilon.changes [pilon] Writing updated NODE_15155_length_187_cov_5.636364_pilon to pilon.fasta [pilon] Writing NODE_15156_length_186_cov_15.430769:1-186 changes to pilon.changes [pilon] Writing updated NODE_15156_length_186_cov_15.430769_pilon to pilon.fasta [pilon] Writing NODE_15157_length_186_cov_13.153846:1-186 changes to pilon.changes [pilon] Writing updated NODE_15157_length_186_cov_13.153846_pilon to pilon.fasta [pilon] Writing NODE_15158_length_185_cov_6.171875:1-185 changes to pilon.changes [pilon] Writing updated NODE_15158_length_185_cov_6.171875_pilon to pilon.fasta [pilon] Writing NODE_15159_length_185_cov_4.906250:1-185 changes to pilon.changes [pilon] Writing updated NODE_15159_length_185_cov_4.906250_pilon to pilon.fasta [pilon] Writing NODE_15160_length_184_cov_62.809524:1-184 changes to pilon.changes [pilon] Writing updated NODE_15160_length_184_cov_62.809524_pilon to pilon.fasta [pilon] Writing NODE_15161_length_184_cov_5.666667:1-184 changes to pilon.changes [pilon] Writing updated NODE_15161_length_184_cov_5.666667_pilon to pilon.fasta [pilon] Writing NODE_15162_length_183_cov_5.725806:1-183 changes to pilon.changes [pilon] Writing updated NODE_15162_length_183_cov_5.725806_pilon to pilon.fasta [pilon] Writing NODE_15163_length_181_cov_17.733333:1-181 changes to pilon.changes [pilon] Writing updated NODE_15163_length_181_cov_17.733333_pilon to pilon.fasta [pilon] Writing NODE_15164_length_181_cov_6.316667:1-181 changes to pilon.changes [pilon] Writing updated NODE_15164_length_181_cov_6.316667_pilon to pilon.fasta [pilon] Writing NODE_15165_length_180_cov_5.847458:1-180 changes to pilon.changes [pilon] Writing updated NODE_15165_length_180_cov_5.847458_pilon to pilon.fasta [pilon] Writing NODE_15166_length_180_cov_5.237288:1-180 changes to pilon.changes [pilon] Writing updated NODE_15166_length_180_cov_5.237288_pilon to pilon.fasta [pilon] Writing NODE_15167_length_179_cov_2.965517:1-179 changes to pilon.changes [pilon] Writing updated NODE_15167_length_179_cov_2.965517_pilon to pilon.fasta [pilon] Writing NODE_15168_length_179_cov_2.551724:1-179 changes to pilon.changes [pilon] Writing updated NODE_15168_length_179_cov_2.551724_pilon to pilon.fasta [pilon] Writing NODE_15169_length_177_cov_43.535714:1-177 changes to pilon.changes [pilon] Writing updated NODE_15169_length_177_cov_43.535714_pilon to pilon.fasta [pilon] Writing NODE_15170_length_177_cov_43.125000:1-177 changes to pilon.changes [pilon] Writing updated NODE_15170_length_177_cov_43.125000_pilon to pilon.fasta [pilon] Writing NODE_15171_length_176_cov_10.381818:1-176 changes to pilon.changes [pilon] Writing updated NODE_15171_length_176_cov_10.381818_pilon to pilon.fasta [pilon] Writing NODE_15172_length_176_cov_7.690909:1-176 changes to pilon.changes [pilon] Writing updated NODE_15172_length_176_cov_7.690909_pilon to pilon.fasta [pilon] Writing NODE_15173_length_175_cov_10.722222:1-175 changes to pilon.changes [pilon] Writing updated NODE_15173_length_175_cov_10.722222_pilon to pilon.fasta [pilon] Writing NODE_15174_length_174_cov_12.943396:1-174 changes to pilon.changes [pilon] Writing updated NODE_15174_length_174_cov_12.943396_pilon to pilon.fasta [pilon] Writing NODE_15175_length_174_cov_5.377358:1-174 changes to pilon.changes [pilon] Writing updated NODE_15175_length_174_cov_5.377358_pilon to pilon.fasta [pilon] Writing NODE_15176_length_172_cov_8.294118:1-172 changes to pilon.changes [pilon] Writing updated NODE_15176_length_172_cov_8.294118_pilon to pilon.fasta [pilon] Writing NODE_15177_length_171_cov_10.440000:1-171 changes to pilon.changes [pilon] Writing updated NODE_15177_length_171_cov_10.440000_pilon to pilon.fasta [pilon] Writing NODE_15178_length_171_cov_8.780000:1-171 changes to pilon.changes [pilon] Writing updated NODE_15178_length_171_cov_8.780000_pilon to pilon.fasta [pilon] Writing NODE_15179_length_171_cov_6.900000:1-171 changes to pilon.changes [pilon] Writing updated NODE_15179_length_171_cov_6.900000_pilon to pilon.fasta [pilon] Writing NODE_15180_length_171_cov_5.840000:1-171 changes to pilon.changes [pilon] Writing updated NODE_15180_length_171_cov_5.840000_pilon to pilon.fasta [pilon] Writing NODE_15181_length_170_cov_24.469388:1-170 changes to pilon.changes [pilon] Writing updated NODE_15181_length_170_cov_24.469388_pilon to pilon.fasta [pilon] Writing NODE_15182_length_169_cov_11.979167:1-169 changes to pilon.changes [pilon] Writing updated NODE_15182_length_169_cov_11.979167_pilon to pilon.fasta [pilon] Writing NODE_15183_length_168_cov_6.170213:1-168 changes to pilon.changes [pilon] Writing updated NODE_15183_length_168_cov_6.170213_pilon to pilon.fasta [pilon] Writing NODE_15184_length_167_cov_8.478261:1-167 changes to pilon.changes [pilon] Writing updated NODE_15184_length_167_cov_8.478261_pilon to pilon.fasta [pilon] Writing NODE_15185_length_166_cov_34.333333:1-166 changes to pilon.changes [pilon] Writing updated NODE_15185_length_166_cov_34.333333_pilon to pilon.fasta [pilon] Writing NODE_15186_length_165_cov_26.454545:1-165 changes to pilon.changes [pilon] Writing updated NODE_15186_length_165_cov_26.454545_pilon to pilon.fasta [pilon] Writing NODE_15187_length_165_cov_6.068182:1-165 changes to pilon.changes [pilon] Writing updated NODE_15187_length_165_cov_6.068182_pilon to pilon.fasta [pilon] Writing NODE_15188_length_164_cov_1.860465:1-164 changes to pilon.changes [pilon] Writing updated NODE_15188_length_164_cov_1.860465_pilon to pilon.fasta [pilon] Writing NODE_15189_length_163_cov_27.714286:1-163 changes to pilon.changes [pilon] Writing updated NODE_15189_length_163_cov_27.714286_pilon to pilon.fasta [pilon] Writing NODE_15190_length_163_cov_1.333333:1-163 changes to pilon.changes [pilon] Writing updated NODE_15190_length_163_cov_1.333333_pilon to pilon.fasta [pilon] Writing NODE_15191_length_162_cov_83.756098:1-162 changes to pilon.changes [pilon] Writing updated NODE_15191_length_162_cov_83.756098_pilon to pilon.fasta [pilon] Writing NODE_15192_length_162_cov_68.439024:1-162 changes to pilon.changes [pilon] Writing updated NODE_15192_length_162_cov_68.439024_pilon to pilon.fasta [pilon] Writing NODE_15193_length_162_cov_66.219512:1-162 changes to pilon.changes [pilon] Writing updated NODE_15193_length_162_cov_66.219512_pilon to pilon.fasta [pilon] Writing NODE_15194_length_161_cov_53.050000:1-161 changes to pilon.changes [pilon] Writing updated NODE_15194_length_161_cov_53.050000_pilon to pilon.fasta [pilon] Writing NODE_15195_length_161_cov_43.750000:1-161 changes to pilon.changes [pilon] Writing updated NODE_15195_length_161_cov_43.750000_pilon to pilon.fasta [pilon] Writing NODE_15196_length_161_cov_5.275000:1-161 changes to pilon.changes [pilon] Writing updated NODE_15196_length_161_cov_5.275000_pilon to pilon.fasta [pilon] Writing NODE_15197_length_160_cov_46.102564:1-160 changes to pilon.changes [pilon] Writing updated NODE_15197_length_160_cov_46.102564_pilon to pilon.fasta [pilon] Writing NODE_15198_length_159_cov_96.947368:1-159 changes to pilon.changes [pilon] Writing updated NODE_15198_length_159_cov_96.947368_pilon to pilon.fasta [pilon] Writing NODE_15199_length_159_cov_71.157895:1-159 changes to pilon.changes [pilon] Writing updated NODE_15199_length_159_cov_71.157895_pilon to pilon.fasta [pilon] Writing NODE_15200_length_159_cov_7.236842:1-159 changes to pilon.changes [pilon] Writing updated NODE_15200_length_159_cov_7.236842_pilon to pilon.fasta [pilon] Writing NODE_15201_length_158_cov_58.567568:1-158 changes to pilon.changes [pilon] Writing updated NODE_15201_length_158_cov_58.567568_pilon to pilon.fasta [pilon] Writing NODE_15202_length_158_cov_8.324324:1-158 changes to pilon.changes [pilon] Writing updated NODE_15202_length_158_cov_8.324324_pilon to pilon.fasta [pilon] Writing NODE_15203_length_157_cov_37.944444:1-157 changes to pilon.changes [pilon] Writing updated NODE_15203_length_157_cov_37.944444_pilon to pilon.fasta [pilon] Writing NODE_15204_length_157_cov_13.833333:1-157 changes to pilon.changes [pilon] Writing updated NODE_15204_length_157_cov_13.833333_pilon to pilon.fasta [pilon] Writing NODE_15205_length_157_cov_12.611111:1-157 changes to pilon.changes [pilon] Writing updated NODE_15205_length_157_cov_12.611111_pilon to pilon.fasta [pilon] Writing NODE_15206_length_156_cov_148.685714:1-156 changes to pilon.changes [pilon] Writing updated NODE_15206_length_156_cov_148.685714_pilon to pilon.fasta [pilon] Writing NODE_15207_length_156_cov_38.428571:1-156 changes to pilon.changes [pilon] Writing updated NODE_15207_length_156_cov_38.428571_pilon to pilon.fasta [pilon] Writing NODE_15208_length_155_cov_50.470588:1-155 changes to pilon.changes [pilon] Writing updated NODE_15208_length_155_cov_50.470588_pilon to pilon.fasta [pilon] Writing NODE_15209_length_155_cov_46.058824:1-155 changes to pilon.changes [pilon] Writing updated NODE_15209_length_155_cov_46.058824_pilon to pilon.fasta [pilon] Writing NODE_15210_length_154_cov_16.939394:1-154 changes to pilon.changes [pilon] Writing updated NODE_15210_length_154_cov_16.939394_pilon to pilon.fasta [pilon] Writing NODE_15211_length_154_cov_7.242424:1-154 changes to pilon.changes [pilon] Writing updated NODE_15211_length_154_cov_7.242424_pilon to pilon.fasta [pilon] Writing NODE_15212_length_153_cov_75.812500:1-153 changes to pilon.changes [pilon] Writing updated NODE_15212_length_153_cov_75.812500_pilon to pilon.fasta [pilon] Writing NODE_15213_length_153_cov_1.218750:1-153 changes to pilon.changes [pilon] Writing updated NODE_15213_length_153_cov_1.218750_pilon to pilon.fasta [pilon] Writing NODE_15214_length_152_cov_31.483871:1-152 changes to pilon.changes [pilon] Writing updated NODE_15214_length_152_cov_31.483871_pilon to pilon.fasta [pilon] Writing NODE_15215_length_152_cov_9.000000:1-152 changes to pilon.changes [pilon] Writing updated NODE_15215_length_152_cov_9.000000_pilon to pilon.fasta [pilon] Writing NODE_15216_length_151_cov_18.033333:1-151 changes to pilon.changes [pilon] Writing updated NODE_15216_length_151_cov_18.033333_pilon to pilon.fasta [pilon] Writing NODE_15217_length_150_cov_9.620690:1-150 changes to pilon.changes [pilon] Writing updated NODE_15217_length_150_cov_9.620690_pilon to pilon.fasta [pilon] Writing NODE_15218_length_150_cov_3.241379:1-150 changes to pilon.changes [pilon] Writing updated NODE_15218_length_150_cov_3.241379_pilon to pilon.fasta [pilon] Writing NODE_15219_length_149_cov_38.285714:1-149 changes to pilon.changes [pilon] Writing updated NODE_15219_length_149_cov_38.285714_pilon to pilon.fasta [pilon] Writing NODE_15220_length_148_cov_35.629630:1-148 changes to pilon.changes [pilon] Writing updated NODE_15220_length_148_cov_35.629630_pilon to pilon.fasta [pilon] Writing NODE_15221_length_147_cov_15.884615:1-147 changes to pilon.changes [pilon] Writing updated NODE_15221_length_147_cov_15.884615_pilon to pilon.fasta [pilon] Writing NODE_15222_length_146_cov_12.400000:1-146 changes to pilon.changes [pilon] Writing updated NODE_15222_length_146_cov_12.400000_pilon to pilon.fasta [pilon] Writing NODE_15223_length_144_cov_6.652174:1-144 changes to pilon.changes [pilon] Writing updated NODE_15223_length_144_cov_6.652174_pilon to pilon.fasta [pilon] Writing NODE_15224_length_144_cov_5.608696:1-144 changes to pilon.changes [pilon] Writing updated NODE_15224_length_144_cov_5.608696_pilon to pilon.fasta [pilon] Writing NODE_15225_length_143_cov_6.681818:1-143 changes to pilon.changes [pilon] Writing updated NODE_15225_length_143_cov_6.681818_pilon to pilon.fasta [pilon] Writing NODE_15226_length_142_cov_22.476190:1-142 changes to pilon.changes [pilon] Writing updated NODE_15226_length_142_cov_22.476190_pilon to pilon.fasta [pilon] Writing NODE_15227_length_142_cov_3.333333:1-142 changes to pilon.changes [pilon] Writing updated NODE_15227_length_142_cov_3.333333_pilon to pilon.fasta [pilon] Writing NODE_15228_length_141_cov_23.600000:1-141 changes to pilon.changes [pilon] Writing updated NODE_15228_length_141_cov_23.600000_pilon to pilon.fasta [pilon] Writing NODE_15229_length_140_cov_33.526316:1-140 changes to pilon.changes [pilon] Writing updated NODE_15229_length_140_cov_33.526316_pilon to pilon.fasta [pilon] Writing NODE_15230_length_140_cov_23.157895:1-140 changes to pilon.changes [pilon] Writing updated NODE_15230_length_140_cov_23.157895_pilon to pilon.fasta [pilon] Writing NODE_15231_length_140_cov_22.105263:1-140 changes to pilon.changes [pilon] Writing updated NODE_15231_length_140_cov_22.105263_pilon to pilon.fasta [pilon] Writing NODE_15232_length_140_cov_16.368421:1-140 changes to pilon.changes [pilon] Writing updated NODE_15232_length_140_cov_16.368421_pilon to pilon.fasta [pilon] Writing NODE_15233_length_140_cov_5.736842:1-140 changes to pilon.changes [pilon] Writing updated NODE_15233_length_140_cov_5.736842_pilon to pilon.fasta [pilon] Writing NODE_15234_length_139_cov_40.611111:1-139 changes to pilon.changes [pilon] Writing updated NODE_15234_length_139_cov_40.611111_pilon to pilon.fasta [pilon] Writing NODE_15235_length_138_cov_2.000000:1-138 changes to pilon.changes [pilon] Writing updated NODE_15235_length_138_cov_2.000000_pilon to pilon.fasta [pilon] Writing NODE_15236_length_138_cov_1.117647:1-138 changes to pilon.changes [pilon] Writing updated NODE_15236_length_138_cov_1.117647_pilon to pilon.fasta [pilon] Writing NODE_15237_length_135_cov_50.857143:1-135 changes to pilon.changes [pilon] Writing updated NODE_15237_length_135_cov_50.857143_pilon to pilon.fasta [pilon] Writing NODE_15238_length_134_cov_46.230769:1-134 changes to pilon.changes [pilon] Writing updated NODE_15238_length_134_cov_46.230769_pilon to pilon.fasta [pilon] Writing NODE_15239_length_131_cov_143.300000:1-131 changes to pilon.changes [pilon] Writing updated NODE_15239_length_131_cov_143.300000_pilon to pilon.fasta [pilon] Writing NODE_15240_length_131_cov_29.700000:1-131 changes to pilon.changes [pilon] Writing updated NODE_15240_length_131_cov_29.700000_pilon to pilon.fasta [pilon] Writing NODE_15241_length_131_cov_24.300000:1-131 changes to pilon.changes [pilon] Writing updated NODE_15241_length_131_cov_24.300000_pilon to pilon.fasta [pilon] Writing NODE_15242_length_131_cov_21.500000:1-131 changes to pilon.changes [pilon] Writing updated NODE_15242_length_131_cov_21.500000_pilon to pilon.fasta [pilon] Writing NODE_15243_length_130_cov_2.333333:1-130 changes to pilon.changes [pilon] Writing updated NODE_15243_length_130_cov_2.333333_pilon to pilon.fasta [pilon] Writing NODE_15244_length_129_cov_53.125000:1-129 changes to pilon.changes [pilon] Writing updated NODE_15244_length_129_cov_53.125000_pilon to pilon.fasta [pilon] Writing NODE_15245_length_129_cov_1.000000:1-129 changes to pilon.changes [pilon] Writing updated NODE_15245_length_129_cov_1.000000_pilon to pilon.fasta [pilon] Writing NODE_15246_length_128_cov_63.428571:1-128 changes to pilon.changes [pilon] Writing updated NODE_15246_length_128_cov_63.428571_pilon to pilon.fasta [pilon] Writing NODE_15247_length_128_cov_34.857143:1-128 changes to pilon.changes [pilon] Writing updated NODE_15247_length_128_cov_34.857143_pilon to pilon.fasta [pilon] Writing NODE_15248_length_128_cov_28.428571:1-128 changes to pilon.changes [pilon] Writing updated NODE_15248_length_128_cov_28.428571_pilon to pilon.fasta [pilon] Writing NODE_15249_length_127_cov_143.333333:1-127 changes to pilon.changes [pilon] Writing updated NODE_15249_length_127_cov_143.333333_pilon to pilon.fasta [pilon] Writing NODE_15250_length_126_cov_12.800000:1-126 changes to pilon.changes [pilon] Writing updated NODE_15250_length_126_cov_12.800000_pilon to pilon.fasta [pilon] Writing NODE_15251_length_126_cov_5.800000:1-126 changes to pilon.changes [pilon] Writing updated NODE_15251_length_126_cov_5.800000_pilon to pilon.fasta [pilon] Writing NODE_15252_length_126_cov_3.400000:1-126 changes to pilon.changes [pilon] Writing updated NODE_15252_length_126_cov_3.400000_pilon to pilon.fasta [pilon] Writing NODE_15253_length_125_cov_128.000000:1-125 changes to pilon.changes [pilon] Writing updated NODE_15253_length_125_cov_128.000000_pilon to pilon.fasta [pilon] Writing NODE_15254_length_125_cov_30.750000:1-125 changes to pilon.changes [pilon] Writing updated NODE_15254_length_125_cov_30.750000_pilon to pilon.fasta [pilon] Writing NODE_15255_length_125_cov_21.750000:1-125 changes to pilon.changes [pilon] Writing updated NODE_15255_length_125_cov_21.750000_pilon to pilon.fasta [pilon] Writing NODE_15256_length_125_cov_19.500000:1-125 changes to pilon.changes [pilon] Writing updated NODE_15256_length_125_cov_19.500000_pilon to pilon.fasta [pilon] Writing NODE_15257_length_125_cov_18.500000:1-125 changes to pilon.changes [pilon] Writing updated NODE_15257_length_125_cov_18.500000_pilon to pilon.fasta [pilon] Writing NODE_15258_length_125_cov_18.250000:1-125 changes to pilon.changes [pilon] Writing updated NODE_15258_length_125_cov_18.250000_pilon to pilon.fasta [pilon] Writing NODE_15259_length_125_cov_15.250000:1-125 changes to pilon.changes [pilon] Writing updated NODE_15259_length_125_cov_15.250000_pilon to pilon.fasta [pilon] Writing NODE_15260_length_125_cov_11.500000:1-125 changes to pilon.changes [pilon] Writing updated NODE_15260_length_125_cov_11.500000_pilon to pilon.fasta [pilon] Writing NODE_15261_length_125_cov_8.000000:1-125 changes to pilon.changes [pilon] Writing updated NODE_15261_length_125_cov_8.000000_pilon to pilon.fasta [pilon] Writing NODE_15262_length_124_cov_3.000000:1-124 changes to pilon.changes [pilon] Writing updated NODE_15262_length_124_cov_3.000000_pilon to pilon.fasta [pilon] Writing NODE_15263_length_123_cov_43.000000:1-123 changes to pilon.changes [pilon] Writing updated NODE_15263_length_123_cov_43.000000_pilon to pilon.fasta [pilon] Writing NODE_15264_length_123_cov_6.000000:1-123 changes to pilon.changes [pilon] Writing updated NODE_15264_length_123_cov_6.000000_pilon to pilon.fasta [pilon] Writing NODE_15265_length_123_cov_1.000000:1-123 changes to pilon.changes [pilon] Writing updated NODE_15265_length_123_cov_1.000000_pilon to pilon.fasta [pilon] Writing NODE_15266_length_122_cov_1976.000000:1-122 changes to pilon.changes [pilon] Writing updated NODE_15266_length_122_cov_1976.000000_pilon to pilon.fasta [pilon] Writing NODE_15267_length_122_cov_124.000000:1-122 changes to pilon.changes [pilon] Writing updated NODE_15267_length_122_cov_124.000000_pilon to pilon.fasta [pilon] Writing NODE_15268_length_122_cov_1.000000:1-122 changes to pilon.changes [pilon] Writing updated NODE_15268_length_122_cov_1.000000_pilon to pilon.fasta [pilon] Writing NODE_15269_length_122_cov_1.000000:1-122 changes to pilon.changes [pilon] Writing updated NODE_15269_length_122_cov_1.000000_pilon to pilon.fasta [pilon] Mean frags coverage: 25 [pilon] Mean total coverage: 25 [shovill] Repaired 1900 contigs from spades.fasta at 3141 positions. [shovill] Removing low coverage contig (< 2 x): NODE_48_length_3615_cov_1.363194_pilon [shovill] Removing low coverage contig (< 2 x): NODE_70_length_3293_cov_1.966583_pilon [shovill] Removing low coverage contig (< 2 x): NODE_76_length_3249_cov_1.394182_pilon [shovill] Removing low coverage contig (< 2 x): NODE_131_length_2811_cov_1.649442_pilon [shovill] Removing low coverage contig (< 2 x): NODE_219_length_2434_cov_1.327281_pilon [shovill] Removing low coverage contig (< 2 x): NODE_223_length_2426_cov_1.926247_pilon [shovill] Removing low coverage contig (< 2 x): NODE_230_length_2408_cov_1.828596_pilon [shovill] Removing low coverage contig (< 2 x): NODE_274_length_2291_cov_1.837327_pilon [shovill] Removing low coverage contig (< 2 x): NODE_284_length_2272_cov_1.907020_pilon [shovill] Removing low coverage contig (< 2 x): NODE_304_length_2236_cov_1.414657_pilon [shovill] Removing low coverage contig (< 2 x): NODE_320_length_2197_cov_1.812139_pilon [shovill] Removing low coverage contig (< 2 x): NODE_322_length_2187_cov_1.195063_pilon [shovill] Removing low coverage contig (< 2 x): NODE_325_length_2177_cov_1.982490_pilon [shovill] Removing low coverage contig (< 2 x): NODE_334_length_2151_cov_1.993596_pilon [shovill] Removing low coverage contig (< 2 x): NODE_365_length_2104_cov_1.073626_pilon [shovill] Removing low coverage contig (< 2 x): NODE_368_length_2098_cov_1.960040_pilon [shovill] Removing low coverage contig (< 2 x): NODE_389_length_2062_cov_1.777950_pilon [shovill] Removing low coverage contig (< 2 x): NODE_390_length_2062_cov_1.743946_pilon [shovill] Removing low coverage contig (< 2 x): NODE_393_length_2061_cov_1.969072_pilon [shovill] Removing low coverage contig (< 2 x): NODE_402_length_2045_cov_1.426195_pilon [shovill] Removing low coverage contig (< 2 x): NODE_421_length_2010_cov_1.926416_pilon [shovill] Removing low coverage contig (< 2 x): NODE_433_length_1993_cov_1.446581_pilon [shovill] Removing low coverage contig (< 2 x): NODE_445_length_1976_cov_1.833423_pilon [shovill] Removing low coverage contig (< 2 x): NODE_447_length_1974_cov_1.789530_pilon [shovill] Removing low coverage contig (< 2 x): NODE_448_length_1974_cov_1.509984_pilon [shovill] Removing low coverage contig (< 2 x): NODE_458_length_1966_cov_1.794038_pilon [shovill] Removing low coverage contig (< 2 x): NODE_462_length_1962_cov_1.919609_pilon [shovill] Removing low coverage contig (< 2 x): NODE_470_length_1948_cov_1.886700_pilon [shovill] Removing low coverage contig (< 2 x): NODE_472_length_1947_cov_1.131982_pilon [shovill] Removing low coverage contig (< 2 x): NODE_495_length_1913_cov_1.911830_pilon [shovill] Removing low coverage contig (< 2 x): NODE_509_length_1908_cov_1.691662_pilon [shovill] Removing low coverage contig (< 2 x): NODE_513_length_1904_cov_1.782389_pilon [shovill] Removing low coverage contig (< 2 x): NODE_515_length_1903_cov_1.273288_pilon [shovill] Removing low coverage contig (< 2 x): NODE_563_length_1846_cov_1.961159_pilon [shovill] Removing low coverage contig (< 2 x): NODE_573_length_1834_cov_1.593695_pilon [shovill] Removing low coverage contig (< 2 x): NODE_575_length_1832_cov_1.923437_pilon [shovill] Removing low coverage contig (< 2 x): NODE_586_length_1824_cov_1.574868_pilon [shovill] Removing low coverage contig (< 2 x): NODE_587_length_1823_cov_1.106933_pilon [shovill] Removing low coverage contig (< 2 x): NODE_589_length_1822_cov_1.279248_pilon [shovill] Removing low coverage contig (< 2 x): NODE_594_length_1819_cov_1.742049_pilon [shovill] Removing low coverage contig (< 2 x): NODE_609_length_1798_cov_1.286225_pilon [shovill] Removing low coverage contig (< 2 x): NODE_611_length_1793_cov_1.612440_pilon [shovill] Removing low coverage contig (< 2 x): NODE_640_length_1762_cov_1.925046_pilon [shovill] Removing low coverage contig (< 2 x): NODE_644_length_1754_cov_1.664421_pilon [shovill] Removing low coverage contig (< 2 x): NODE_654_length_1743_cov_1.513564_pilon [shovill] Removing low coverage contig (< 2 x): NODE_689_length_1711_cov_1.705031_pilon [shovill] Removing low coverage contig (< 2 x): NODE_693_length_1709_cov_1.948992_pilon [shovill] Removing low coverage contig (< 2 x): NODE_698_length_1706_cov_1.511041_pilon [shovill] Removing low coverage contig (< 2 x): NODE_700_length_1704_cov_1.828174_pilon [shovill] Removing low coverage contig (< 2 x): NODE_720_length_1688_cov_1.809190_pilon [shovill] Removing low coverage contig (< 2 x): NODE_746_length_1671_cov_1.616129_pilon [shovill] Removing low coverage contig (< 2 x): NODE_752_length_1667_cov_1.478655_pilon [shovill] Removing low coverage contig (< 2 x): NODE_775_length_1642_cov_1.388560_pilon [shovill] Removing low coverage contig (< 2 x): NODE_785_length_1632_cov_1.823296_pilon [shovill] Removing low coverage contig (< 2 x): NODE_787_length_1631_cov_1.972185_pilon [shovill] Removing low coverage contig (< 2 x): NODE_796_length_1629_cov_1.968170_pilon [shovill] Removing low coverage contig (< 2 x): NODE_804_length_1625_cov_1.716090_pilon [shovill] Removing low coverage contig (< 2 x): NODE_812_length_1621_cov_1.974667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_821_length_1613_cov_1.869973_pilon [shovill] Removing low coverage contig (< 2 x): NODE_839_length_1606_cov_1.657239_pilon [shovill] Removing low coverage contig (< 2 x): NODE_889_length_1569_cov_1.681630_pilon [shovill] Removing low coverage contig (< 2 x): NODE_896_length_1564_cov_1.956341_pilon [shovill] Removing low coverage contig (< 2 x): NODE_958_length_1521_cov_1.430714_pilon [shovill] Removing low coverage contig (< 2 x): NODE_960_length_1519_cov_1.987124_pilon [shovill] Removing low coverage contig (< 2 x): NODE_967_length_1515_cov_1.674319_pilon [shovill] Removing low coverage contig (< 2 x): NODE_970_length_1514_cov_1.780330_pilon [shovill] Removing low coverage contig (< 2 x): NODE_978_length_1511_cov_1.616547_pilon [shovill] Removing low coverage contig (< 2 x): NODE_980_length_1509_cov_1.510086_pilon [shovill] Removing low coverage contig (< 2 x): NODE_982_length_1508_cov_1.972603_pilon [shovill] Removing low coverage contig (< 2 x): NODE_986_length_1505_cov_0.885838_pilon [shovill] Removing low coverage contig (< 2 x): NODE_989_length_1504_cov_1.725958_pilon [shovill] Removing low coverage contig (< 2 x): NODE_991_length_1503_cov_1.924023_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1007_length_1491_cov_0.941606_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1010_length_1490_cov_1.539080_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1018_length_1487_cov_1.435578_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1022_length_1485_cov_1.997067_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1050_length_1468_cov_1.260579_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1070_length_1456_cov_1.483895_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1077_length_1454_cov_1.711178_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1087_length_1448_cov_1.212509_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1108_length_1437_cov_1.726444_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1119_length_1431_cov_1.175573_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1126_length_1427_cov_1.483155_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1140_length_1423_cov_1.523041_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1147_length_1420_cov_1.910701_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1150_length_1418_cov_1.178874_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1157_length_1415_cov_1.666924_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1161_length_1413_cov_1.606811_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1188_length_1403_cov_1.235569_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1196_length_1400_cov_1.178264_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1198_length_1399_cov_1.621283_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1210_length_1388_cov_1.310182_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1216_length_1384_cov_1.898654_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1222_length_1379_cov_1.750397_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1237_length_1372_cov_1.777778_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1236_length_1372_cov_1.889688_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1249_length_1367_cov_1.491974_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1271_length_1354_cov_1.478508_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1276_length_1352_cov_1.359870_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1283_length_1348_cov_1.194784_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1293_length_1344_cov_1.952576_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1297_length_1342_cov_1.731368_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1318_length_1333_cov_1.670792_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1320_length_1333_cov_1.507426_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1319_length_1333_cov_1.574257_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1333_length_1328_cov_0.954432_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1374_length_1309_cov_1.377946_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1375_length_1308_cov_1.978096_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1378_length_1307_cov_1.967116_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1387_length_1302_cov_1.002540_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1393_length_1299_cov_1.904924_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1412_length_1295_cov_1.769165_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1427_length_1291_cov_1.888889_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1430_length_1289_cov_1.046233_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1437_length_1286_cov_1.151931_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1442_length_1284_cov_0.950989_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1446_length_1282_cov_0.783807_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1456_length_1279_cov_1.272021_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1466_length_1276_cov_1.639827_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1483_length_1270_cov_1.798956_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1488_length_1267_cov_1.250436_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1502_length_1258_cov_1.085312_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1517_length_1252_cov_1.392573_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1526_length_1250_cov_1.537644_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1530_length_1249_cov_1.743794_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1536_length_1247_cov_1.712256_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1544_length_1243_cov_1.309269_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1546_length_1242_cov_0.855486_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1549_length_1241_cov_1.876786_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1594_length_1221_cov_1.601818_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1596_length_1219_cov_1.091985_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1607_length_1214_cov_1.946935_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1617_length_1212_cov_1.749771_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1616_length_1212_cov_1.915674_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1626_length_1209_cov_0.704044_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1630_length_1206_cov_1.157604_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1635_length_1205_cov_1.041513_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1653_length_1200_cov_1.832252_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1662_length_1196_cov_1.820465_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1670_length_1193_cov_1.561567_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1694_length_1184_cov_1.931326_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1704_length_1179_cov_1.943289_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1710_length_1178_cov_1.652791_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1709_length_1178_cov_1.922422_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1721_length_1173_cov_1.827947_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1738_length_1167_cov_1.651052_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1769_length_1156_cov_1.185507_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1778_length_1154_cov_1.629235_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1782_length_1153_cov_1.172481_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1791_length_1150_cov_0.913508_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1796_length_1148_cov_1.700097_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1816_length_1142_cov_1.693438_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1833_length_1134_cov_1.973346_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1838_length_1133_cov_0.596838_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1848_length_1130_cov_1.241824_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1851_length_1129_cov_1.731151_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1853_length_1128_cov_1.638530_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1852_length_1128_cov_1.691162_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1855_length_1127_cov_1.487078_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1870_length_1122_cov_1.932068_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1876_length_1121_cov_1.550000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1879_length_1120_cov_0.882883_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1891_length_1116_cov_1.359799_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1893_length_1115_cov_1.882294_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1914_length_1109_cov_1.943320_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1915_length_1108_cov_1.705167_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1920_length_1107_cov_1.265720_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1929_length_1104_cov_1.584944_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1935_length_1102_cov_1.765545_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1936_length_1102_cov_1.154944_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1942_length_1100_cov_0.713994_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1947_length_1099_cov_1.204499_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1946_length_1099_cov_1.422290_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1951_length_1098_cov_1.516888_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1959_length_1096_cov_1.543590_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1965_length_1095_cov_1.329569_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1964_length_1095_cov_1.978439_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1975_length_1093_cov_1.910494_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1982_length_1092_cov_1.526262_pilon [shovill] Removing low coverage contig (< 2 x): NODE_1996_length_1088_cov_1.315408_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2000_length_1087_cov_1.853002_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2011_length_1084_cov_1.477674_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2014_length_1083_cov_1.708940_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2023_length_1081_cov_1.733333_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2029_length_1079_cov_1.189979_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2028_length_1079_cov_1.323591_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2035_length_1077_cov_1.646444_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2041_length_1075_cov_1.418239_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2046_length_1074_cov_0.599161_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2059_length_1070_cov_0.629083_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2058_length_1070_cov_1.587987_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2075_length_1066_cov_1.808466_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2079_length_1065_cov_1.462924_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2080_length_1065_cov_1.256356_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2096_length_1061_cov_1.663830_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2099_length_1060_cov_1.189563_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2101_length_1059_cov_1.312367_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2104_length_1058_cov_1.228388_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2103_length_1058_cov_1.731057_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2109_length_1057_cov_1.628205_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2112_length_1056_cov_1.022460_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2118_length_1055_cov_1.167024_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2117_length_1055_cov_1.367238_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2123_length_1053_cov_1.135193_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2136_length_1050_cov_0.555436_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2141_length_1049_cov_0.915948_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2143_length_1048_cov_1.078749_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2156_length_1044_cov_1.256771_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2157_length_1043_cov_1.977223_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2158_length_1043_cov_1.779826_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2166_length_1042_cov_1.550489_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2165_length_1042_cov_1.636265_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2180_length_1039_cov_1.620915_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2181_length_1039_cov_1.335512_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2206_length_1032_cov_1.823271_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2207_length_1032_cov_1.781559_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2208_length_1032_cov_1.386389_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2212_length_1031_cov_1.149451_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2211_length_1031_cov_1.786813_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2230_length_1026_cov_1.723757_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2229_length_1026_cov_1.809945_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2233_length_1025_cov_0.936947_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2244_length_1022_cov_1.241953_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2257_length_1020_cov_1.711902_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2265_length_1018_cov_1.086957_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2301_length_1011_cov_1.886517_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2302_length_1011_cov_1.696629_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2318_length_1007_cov_0.743792_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2317_length_1007_cov_1.954853_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2328_length_1005_cov_1.343891_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2327_length_1005_cov_1.565611_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2334_length_1004_cov_1.635334_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2335_length_1004_cov_0.890147_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2339_length_1003_cov_1.894558_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2344_length_1002_cov_1.137344_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2357_length_1000_cov_1.386803_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2356_length_1000_cov_1.952218_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2363_length_999_cov_1.719818_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2362_length_999_cov_1.986333_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2379_length_995_cov_0.948513_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2386_length_993_cov_1.769495_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2397_length_991_cov_1.271264_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2411_length_989_cov_1.860599_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2424_length_985_cov_1.496528_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2427_length_984_cov_1.899189_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2454_length_977_cov_1.172897_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2453_length_977_cov_1.475467_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2464_length_975_cov_1.679157_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2468_length_974_cov_1.376319_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2470_length_973_cov_1.791080_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2478_length_971_cov_1.942353_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2489_length_970_cov_1.579505_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2494_length_969_cov_1.620283_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2500_length_968_cov_1.378985_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2522_length_963_cov_0.944181_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2521_length_963_cov_1.597387_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2527_length_962_cov_0.784780_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2530_length_961_cov_1.964286_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2536_length_960_cov_1.175209_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2535_length_960_cov_1.356377_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2539_length_959_cov_1.120525_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2550_length_957_cov_1.851675_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2561_length_955_cov_1.884892_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2564_length_954_cov_1.686675_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2565_length_954_cov_0.960384_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2572_length_953_cov_1.037260_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2578_length_951_cov_1.662651_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2577_length_951_cov_1.806024_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2597_length_946_cov_1.116364_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2607_length_945_cov_0.871359_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2606_length_945_cov_1.405340_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2609_length_944_cov_1.284326_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2614_length_943_cov_1.350365_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2615_length_943_cov_1.259124_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2626_length_942_cov_1.444580_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2627_length_942_cov_1.395859_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2628_length_942_cov_1.058465_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2640_length_940_cov_1.860806_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2650_length_938_cov_1.385557_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2649_length_938_cov_1.686659_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2654_length_937_cov_0.421569_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2664_length_935_cov_1.651106_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2665_length_935_cov_0.918919_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2676_length_933_cov_1.253695_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2685_length_932_cov_1.419236_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2691_length_931_cov_1.280247_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2701_length_929_cov_1.855198_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2704_length_929_cov_1.230198_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2703_length_929_cov_1.650990_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2702_length_929_cov_1.750000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2717_length_926_cov_1.911801_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2722_length_925_cov_1.863184_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2724_length_924_cov_1.087173_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2728_length_923_cov_1.451372_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2727_length_923_cov_1.771820_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2729_length_923_cov_1.058603_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2742_length_920_cov_0.866083_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2746_length_919_cov_1.720551_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2748_length_918_cov_1.998745_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2749_length_918_cov_1.647428_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2765_length_915_cov_1.829975_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2766_length_915_cov_1.433249_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2774_length_914_cov_1.813367_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2780_length_913_cov_0.895202_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2779_length_913_cov_1.325758_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2783_length_912_cov_1.058154_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2782_length_912_cov_1.534766_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2790_length_911_cov_1.005063_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2791_length_911_cov_0.605063_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2789_length_911_cov_1.521519_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2794_length_910_cov_1.690748_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2795_length_910_cov_1.285171_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2802_length_909_cov_1.201777_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2803_length_909_cov_0.884518_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2815_length_907_cov_1.924936_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2817_length_907_cov_0.788804_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2816_length_907_cov_0.989822_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2839_length_904_cov_1.298851_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2851_length_902_cov_1.353393_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2855_length_901_cov_1.344872_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2870_length_899_cov_1.353470_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2871_length_899_cov_1.295630_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2872_length_899_cov_1.028278_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2879_length_897_cov_1.368557_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2890_length_895_cov_1.997416_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2895_length_894_cov_1.516171_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2899_length_893_cov_1.032383_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2905_length_892_cov_0.944228_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2904_length_892_cov_1.317769_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2910_length_891_cov_1.597403_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2929_length_887_cov_1.919060_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2943_length_883_cov_1.955381_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2949_length_882_cov_1.860710_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2950_length_882_cov_1.005256_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2961_length_881_cov_0.780263_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2968_length_880_cov_1.988142_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2975_length_879_cov_1.511873_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2997_length_874_cov_1.423639_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2996_length_874_cov_1.921647_pilon [shovill] Removing low coverage contig (< 2 x): NODE_2998_length_874_cov_1.338645_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3008_length_872_cov_0.470040_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3014_length_871_cov_0.778667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3031_length_868_cov_0.843373_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3029_length_868_cov_1.290495_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3030_length_868_cov_1.136546_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3048_length_864_cov_1.409152_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3062_length_861_cov_1.282432_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3067_length_860_cov_1.125846_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3066_length_860_cov_1.299053_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3072_length_859_cov_1.609756_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3071_length_859_cov_1.688347_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3079_length_858_cov_1.675712_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3091_length_855_cov_1.363760_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3103_length_852_cov_1.738714_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3105_length_851_cov_1.926027_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3115_length_849_cov_1.574176_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3127_length_847_cov_1.603306_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3131_length_846_cov_1.234483_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3132_length_846_cov_1.217931_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3136_length_845_cov_1.715470_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3146_length_843_cov_1.080332_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3145_length_843_cov_1.574792_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3153_length_842_cov_1.969487_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3166_length_839_cov_1.788301_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3172_length_837_cov_1.326816_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3182_length_835_cov_1.326331_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3184_length_835_cov_0.913165_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3183_length_835_cov_1.266106_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3193_length_834_cov_0.516129_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3192_length_834_cov_1.433380_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3191_length_834_cov_1.476858_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3198_length_833_cov_1.403090_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3199_length_833_cov_1.188202_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3208_length_832_cov_1.613221_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3225_length_830_cov_1.638928_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3231_length_829_cov_1.923729_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3232_length_828_cov_0.864215_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3233_length_828_cov_0.694484_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3243_length_826_cov_1.924823_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3242_length_826_cov_1.984397_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3252_length_824_cov_1.018492_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3251_length_824_cov_1.580370_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3270_length_820_cov_1.494993_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3278_length_819_cov_1.497135_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3283_length_818_cov_0.632712_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3303_length_815_cov_1.406340_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3304_length_815_cov_1.067723_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3308_length_814_cov_1.121212_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3314_length_813_cov_1.406069_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3321_length_812_cov_1.017366_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3320_length_812_cov_1.344428_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3327_length_811_cov_1.566667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3332_length_810_cov_1.119013_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3335_length_808_cov_1.901019_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3363_length_803_cov_1.129032_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3364_length_803_cov_0.873900_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3373_length_802_cov_1.602056_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3386_length_800_cov_1.232695_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3394_length_799_cov_0.951327_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3406_length_798_cov_1.528804_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3418_length_796_cov_0.946667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3419_length_796_cov_0.937778_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3428_length_795_cov_1.682493_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3448_length_792_cov_0.789866_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3458_length_791_cov_1.994030_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3472_length_789_cov_0.913174_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3471_length_789_cov_1.408683_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3481_length_788_cov_1.329835_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3493_length_785_cov_1.631024_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3497_length_784_cov_1.431373_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3505_length_783_cov_0.898792_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3509_length_782_cov_1.205749_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3510_length_782_cov_0.623298_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3520_length_781_cov_1.390909_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3519_length_781_cov_1.468182_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3521_length_781_cov_0.654545_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3527_length_780_cov_1.095599_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3537_length_779_cov_0.806991_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3546_length_778_cov_1.986301_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3574_length_774_cov_1.300153_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3589_length_771_cov_0.700000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3595_length_770_cov_0.833590_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3616_length_767_cov_1.317337_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3625_length_765_cov_1.149068_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3633_length_764_cov_1.040435_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3651_length_762_cov_1.789392_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3663_length_760_cov_1.809077_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3675_length_759_cov_1.355799_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3674_length_759_cov_1.362069_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3679_length_758_cov_1.762951_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3680_length_758_cov_1.510204_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3685_length_757_cov_1.407233_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3691_length_756_cov_0.842520_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3697_length_755_cov_0.990536_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3722_length_752_cov_1.763867_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3729_length_751_cov_1.187302_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3730_length_751_cov_1.047619_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3728_length_751_cov_1.198413_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3744_length_749_cov_0.598726_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3757_length_747_cov_1.420128_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3761_length_746_cov_1.819200_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3762_length_746_cov_1.771200_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3769_length_745_cov_0.349359_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3790_length_742_cov_1.243156_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3807_length_740_cov_1.856220_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3808_length_740_cov_1.621971_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3829_length_738_cov_1.136143_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3831_length_737_cov_1.459416_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3837_length_736_cov_0.934959_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3846_length_735_cov_1.084691_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3856_length_734_cov_0.704731_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3855_length_734_cov_1.249592_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3871_length_732_cov_1.836334_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3887_length_730_cov_0.766831_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3886_length_730_cov_0.898194_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3896_length_729_cov_1.547697_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3895_length_729_cov_1.562500_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3902_length_728_cov_1.085667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3915_length_726_cov_1.540496_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3916_length_726_cov_1.406612_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3923_length_725_cov_1.571192_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3930_length_724_cov_1.276949_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3931_length_724_cov_0.723051_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3936_length_723_cov_1.054817_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3944_length_722_cov_1.464226_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3951_length_721_cov_1.755000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3952_length_721_cov_1.716667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3950_length_721_cov_1.876667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3954_length_721_cov_0.780000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3953_length_721_cov_1.633333_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3983_length_717_cov_0.822148_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3981_length_717_cov_1.941275_pilon [shovill] Removing low coverage contig (< 2 x): NODE_3982_length_717_cov_1.760067_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4009_length_715_cov_0.818182_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4019_length_714_cov_0.925801_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4018_length_714_cov_1.917369_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4029_length_713_cov_1.883446_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4030_length_713_cov_0.831081_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4044_length_711_cov_1.933898_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4046_length_711_cov_0.962712_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4045_length_711_cov_1.196610_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4059_length_710_cov_1.572156_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4060_length_710_cov_1.455008_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4061_length_710_cov_1.168081_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4067_length_709_cov_1.528912_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4066_length_709_cov_1.916667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4068_length_709_cov_1.222789_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4078_length_708_cov_1.713799_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4086_length_707_cov_0.684300_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4095_length_706_cov_1.003419_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4102_length_705_cov_0.395548_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4114_length_704_cov_1.699828_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4121_length_703_cov_1.163230_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4122_length_703_cov_1.005155_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4129_length_702_cov_1.690189_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4132_length_701_cov_1.865517_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4140_length_700_cov_1.134715_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4139_length_700_cov_1.314335_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4137_length_700_cov_1.737478_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4138_length_700_cov_1.461140_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4141_length_700_cov_0.799655_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4151_length_699_cov_1.301038_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4152_length_699_cov_0.986159_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4150_length_699_cov_1.429066_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4149_length_699_cov_1.882353_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4158_length_698_cov_0.755633_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4171_length_697_cov_0.699653_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4190_length_695_cov_1.754355_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4191_length_695_cov_1.500000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4201_length_694_cov_1.237347_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4229_length_690_cov_1.594025_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4242_length_689_cov_1.309859_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4241_length_689_cov_1.461268_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4250_length_688_cov_1.585538_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4269_length_685_cov_1.865248_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4270_length_685_cov_1.599291_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4279_length_684_cov_0.621670_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4289_length_683_cov_1.379004_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4288_length_683_cov_1.419929_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4305_length_681_cov_1.357143_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4306_length_681_cov_0.796429_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4318_length_679_cov_1.053763_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4317_length_679_cov_1.250896_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4332_length_678_cov_1.271095_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4330_length_678_cov_1.342908_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4331_length_678_cov_1.337522_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4341_length_677_cov_1.323741_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4361_length_675_cov_1.851986_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4363_length_675_cov_1.099278_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4362_length_675_cov_1.137184_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4360_length_675_cov_1.891697_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4372_length_674_cov_1.356239_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4386_length_673_cov_1.041667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4384_length_673_cov_1.599638_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4385_length_673_cov_1.442029_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4407_length_671_cov_1.123636_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4408_length_671_cov_0.800000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4417_length_670_cov_1.045537_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4419_length_670_cov_0.825137_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4418_length_670_cov_0.936248_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4425_length_669_cov_1.343066_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4423_length_669_cov_1.764599_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4424_length_669_cov_1.437956_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4426_length_669_cov_0.739051_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4433_length_668_cov_1.043876_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4444_length_667_cov_1.379121_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4453_length_666_cov_1.422018_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4474_length_664_cov_1.924494_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4477_length_664_cov_0.749540_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4475_length_664_cov_1.132597_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4476_length_664_cov_1.071823_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4487_length_663_cov_1.981550_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4488_length_663_cov_1.383764_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4489_length_663_cov_1.212177_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4501_length_662_cov_1.624769_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4500_length_662_cov_1.706100_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4502_length_662_cov_1.609982_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4509_length_661_cov_0.879630_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4508_length_661_cov_1.970370_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4521_length_660_cov_1.133581_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4520_length_660_cov_1.395176_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4519_length_660_cov_1.994434_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4531_length_659_cov_1.947955_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4532_length_659_cov_1.314126_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4533_length_659_cov_0.793680_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4542_length_658_cov_1.195531_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4540_length_658_cov_1.702048_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4539_length_658_cov_1.743017_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4541_length_658_cov_1.368715_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4561_length_657_cov_0.451493_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4558_length_657_cov_1.679104_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4559_length_657_cov_1.503731_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4560_length_657_cov_1.259328_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4574_length_656_cov_0.588785_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4573_length_656_cov_1.018692_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4602_length_653_cov_1.101504_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4601_length_653_cov_1.270677_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4609_length_652_cov_1.627119_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4610_length_652_cov_1.244821_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4621_length_651_cov_1.430189_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4628_length_650_cov_1.149338_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4627_length_650_cov_1.525520_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4629_length_650_cov_0.971645_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4637_length_649_cov_1.714015_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4636_length_649_cov_1.861742_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4638_length_649_cov_0.623106_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4656_length_648_cov_0.690702_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4657_length_648_cov_0.681214_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4655_length_648_cov_1.521822_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4668_length_647_cov_1.001901_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4667_length_647_cov_1.245247_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4666_length_647_cov_1.967681_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4669_length_647_cov_0.796578_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4684_length_645_cov_1.124046_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4685_length_645_cov_1.097328_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4694_length_644_cov_1.374761_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4696_length_644_cov_1.137667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4693_length_644_cov_1.957935_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4695_length_644_cov_1.183556_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4706_length_643_cov_1.017241_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4708_length_643_cov_0.605364_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4707_length_643_cov_0.808429_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4705_length_643_cov_1.936782_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4719_length_642_cov_1.289827_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4718_length_642_cov_1.556622_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4731_length_641_cov_1.334615_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4733_length_641_cov_0.788462_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4732_length_641_cov_1.257692_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4742_length_640_cov_0.641618_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4760_length_639_cov_0.814672_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4759_length_639_cov_1.760618_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4770_length_638_cov_1.783366_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4778_length_637_cov_1.779070_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4779_length_637_cov_1.459302_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4781_length_637_cov_0.763566_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4780_length_637_cov_1.205426_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4789_length_636_cov_1.365049_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4790_length_636_cov_1.318447_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4791_length_636_cov_0.524272_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4799_length_635_cov_0.931907_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4797_length_635_cov_1.336576_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4798_length_635_cov_1.285992_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4796_length_635_cov_1.848249_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4810_length_634_cov_0.923977_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4809_length_634_cov_1.754386_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4823_length_633_cov_0.699219_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4821_length_633_cov_1.744141_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4822_length_633_cov_1.351562_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4836_length_632_cov_1.168297_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4837_length_632_cov_0.929550_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4835_length_632_cov_1.874755_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4849_length_631_cov_1.737255_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4852_length_631_cov_0.476471_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4851_length_631_cov_1.550980_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4850_length_631_cov_1.733333_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4860_length_630_cov_0.980354_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4876_length_629_cov_1.419291_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4877_length_629_cov_1.344488_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4878_length_629_cov_0.566929_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4886_length_628_cov_1.366864_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4895_length_627_cov_1.735178_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4896_length_627_cov_1.415020_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4907_length_626_cov_0.904950_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4906_length_626_cov_1.817822_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4915_length_625_cov_1.440476_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4917_length_625_cov_1.307540_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4916_length_625_cov_1.418651_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4918_length_625_cov_1.184524_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4914_length_625_cov_1.638889_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4933_length_624_cov_1.564612_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4932_length_624_cov_1.622266_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4934_length_624_cov_0.836978_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4945_length_623_cov_0.870518_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4942_length_623_cov_1.424303_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4943_length_623_cov_1.404382_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4948_length_623_cov_0.621514_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4946_length_623_cov_0.816733_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4944_length_623_cov_0.950199_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4941_length_623_cov_1.474104_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4947_length_623_cov_0.715139_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4959_length_622_cov_1.055888_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4970_length_621_cov_1.320000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4984_length_620_cov_0.691383_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4996_length_619_cov_0.987952_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4997_length_619_cov_0.863454_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4995_length_619_cov_1.409639_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4993_length_619_cov_1.951807_pilon [shovill] Removing low coverage contig (< 2 x): NODE_4994_length_619_cov_1.757028_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5008_length_618_cov_1.050302_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5009_length_618_cov_0.668008_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5030_length_617_cov_0.562500_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5031_length_617_cov_0.467742_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5041_length_616_cov_0.755556_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5052_length_615_cov_0.923077_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5051_length_615_cov_1.522267_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5061_length_614_cov_0.545639_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5060_length_614_cov_1.667343_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5059_length_614_cov_1.945233_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5071_length_613_cov_1.902439_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5072_length_613_cov_0.955285_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5079_length_612_cov_1.299389_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5080_length_612_cov_0.804481_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5094_length_611_cov_1.261224_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5093_length_611_cov_1.906122_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5095_length_611_cov_0.904082_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5106_length_610_cov_1.801636_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5114_length_609_cov_1.764344_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5129_length_608_cov_0.710472_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5128_length_608_cov_1.400411_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5127_length_608_cov_1.640657_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5130_length_608_cov_0.659138_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5135_length_607_cov_1.989712_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5136_length_607_cov_1.983539_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5137_length_607_cov_1.781893_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5138_length_607_cov_1.043210_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5154_length_606_cov_1.389691_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5153_length_606_cov_1.468041_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5164_length_605_cov_1.902893_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5170_length_604_cov_1.614907_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5188_length_603_cov_1.278008_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5186_length_603_cov_1.844398_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5187_length_603_cov_1.784232_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5199_length_602_cov_1.706861_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5208_length_601_cov_1.458333_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5209_length_601_cov_0.556250_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5207_length_601_cov_1.752083_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5221_length_600_cov_1.098121_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5220_length_600_cov_1.632568_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5228_length_599_cov_0.661088_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5235_length_598_cov_0.507338_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5234_length_598_cov_1.939203_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5251_length_597_cov_0.855042_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5248_length_597_cov_1.884454_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5249_length_597_cov_1.724790_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5250_length_597_cov_1.096639_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5252_length_597_cov_0.657563_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5263_length_596_cov_1.212632_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5264_length_596_cov_0.545263_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5272_length_595_cov_0.932489_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5270_length_595_cov_1.704641_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5271_length_595_cov_1.390295_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5273_length_595_cov_0.909283_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5286_length_594_cov_1.365751_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5298_length_593_cov_1.042373_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5300_length_593_cov_0.584746_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5296_length_593_cov_1.811441_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5299_length_593_cov_0.955508_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5297_length_593_cov_1.680085_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5311_length_592_cov_1.002123_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5310_length_592_cov_1.284501_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5308_length_592_cov_1.838641_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5309_length_592_cov_1.414013_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5324_length_591_cov_1.340426_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5345_length_589_cov_1.880342_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5346_length_589_cov_1.258547_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5357_length_588_cov_1.477516_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5358_length_588_cov_0.940043_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5356_length_588_cov_1.972163_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5370_length_587_cov_1.135193_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5368_length_587_cov_1.757511_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5369_length_587_cov_1.210300_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5378_length_586_cov_1.939785_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5379_length_586_cov_1.554839_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5380_length_586_cov_0.838710_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5381_length_586_cov_0.722581_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5393_length_585_cov_0.883621_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5392_length_585_cov_1.064655_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5405_length_584_cov_1.593952_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5406_length_584_cov_1.129590_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5407_length_584_cov_0.976242_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5415_length_583_cov_1.705628_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5416_length_583_cov_1.495671_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5435_length_582_cov_1.550976_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5436_length_582_cov_0.861171_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5434_length_582_cov_1.616052_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5433_length_582_cov_1.772234_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5446_length_581_cov_1.263043_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5448_length_581_cov_0.508696_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5447_length_581_cov_1.023913_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5462_length_580_cov_1.383442_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5463_length_580_cov_1.270153_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5461_length_580_cov_1.965142_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5464_length_580_cov_0.797386_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5486_length_579_cov_0.497817_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5485_length_579_cov_0.591703_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5483_length_579_cov_1.227074_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5484_length_579_cov_1.213974_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5496_length_578_cov_1.529540_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5505_length_577_cov_1.046053_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5504_length_577_cov_1.587719_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5506_length_577_cov_0.828947_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5521_length_576_cov_1.573626_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5522_length_576_cov_1.389011_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5537_length_575_cov_1.162996_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5554_length_574_cov_1.251656_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5551_length_574_cov_1.479029_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5556_length_574_cov_1.035320_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5552_length_574_cov_1.419426_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5548_length_574_cov_1.962472_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5550_length_574_cov_1.529801_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5549_length_574_cov_1.600442_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5555_length_574_cov_1.066225_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5553_length_574_cov_1.364238_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5574_length_573_cov_0.670354_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5572_length_573_cov_1.101770_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5573_length_573_cov_0.971239_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5584_length_572_cov_1.694013_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5597_length_571_cov_1.926667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5611_length_570_cov_0.690423_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5610_length_570_cov_1.224944_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5625_length_569_cov_1.511161_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5624_length_569_cov_1.540179_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5622_length_569_cov_1.988839_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5623_length_569_cov_1.732143_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5640_length_568_cov_1.026846_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5641_length_568_cov_0.762864_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5638_length_568_cov_1.807606_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5639_length_568_cov_1.055928_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5653_length_567_cov_1.022422_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5664_length_566_cov_1.604494_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5667_length_566_cov_0.325843_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5665_length_566_cov_1.269663_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5666_length_566_cov_1.105618_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5694_length_564_cov_1.205418_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5695_length_564_cov_1.205418_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5692_length_564_cov_1.726862_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5696_length_564_cov_0.580135_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5693_length_564_cov_1.318284_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5710_length_563_cov_1.095023_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5711_length_563_cov_0.934389_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5709_length_563_cov_1.796380_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5720_length_562_cov_0.843537_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5718_length_562_cov_1.839002_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5719_length_562_cov_1.267574_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5730_length_561_cov_0.470455_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5729_length_561_cov_1.068182_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5750_length_560_cov_0.785877_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5748_length_560_cov_0.904328_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5749_length_560_cov_0.865604_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5762_length_559_cov_0.942922_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5763_length_559_cov_0.726027_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5761_length_559_cov_1.034247_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5771_length_558_cov_1.926773_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5772_length_558_cov_0.590389_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5782_length_557_cov_1.561927_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5785_length_557_cov_0.772936_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5783_length_557_cov_1.300459_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5784_length_557_cov_1.247706_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5791_length_556_cov_1.859770_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5792_length_556_cov_1.039080_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5805_length_555_cov_1.698157_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5807_length_555_cov_1.509217_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5806_length_555_cov_1.534562_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5808_length_555_cov_1.069124_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5809_length_555_cov_0.797235_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5824_length_554_cov_1.875289_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5826_length_554_cov_1.221709_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5825_length_554_cov_1.297921_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5834_length_553_cov_1.405093_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5849_length_552_cov_0.621810_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5848_length_552_cov_1.781903_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5862_length_551_cov_0.783721_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5861_length_551_cov_0.948837_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5864_length_551_cov_0.362791_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5860_length_551_cov_1.272093_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5863_length_551_cov_0.662791_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5859_length_551_cov_1.862791_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5871_length_550_cov_0.766900_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5872_length_550_cov_0.585082_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5870_length_550_cov_1.769231_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5889_length_549_cov_1.018692_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5901_length_548_cov_1.313817_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5903_length_548_cov_0.793911_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5902_length_548_cov_0.882904_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5900_length_548_cov_1.491803_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5912_length_547_cov_1.870892_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5913_length_547_cov_1.673709_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5931_length_546_cov_0.722353_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5929_length_546_cov_1.501176_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5930_length_546_cov_1.327059_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5928_length_546_cov_1.835294_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5945_length_545_cov_1.417453_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5946_length_545_cov_1.323113_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5962_length_544_cov_1.591017_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5965_length_544_cov_0.917258_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5963_length_544_cov_1.144208_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5964_length_544_cov_1.004728_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5961_length_544_cov_1.879433_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5978_length_543_cov_0.767773_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5977_length_543_cov_1.253555_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5990_length_542_cov_1.377672_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5991_length_542_cov_0.641330_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5999_length_541_cov_0.947619_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5997_length_541_cov_1.157143_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5998_length_541_cov_1.069048_pilon [shovill] Removing low coverage contig (< 2 x): NODE_5996_length_541_cov_1.471429_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6014_length_540_cov_0.813842_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6025_length_539_cov_1.444976_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6024_length_539_cov_1.688995_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6026_length_539_cov_0.648325_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6035_length_538_cov_0.868106_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6033_length_538_cov_1.961631_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6034_length_538_cov_1.163070_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6053_length_536_cov_1.204819_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6061_length_535_cov_0.589372_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6060_length_535_cov_0.973430_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6078_length_534_cov_1.997579_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6090_length_533_cov_1.461165_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6089_length_533_cov_1.478155_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6088_length_533_cov_1.720874_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6092_length_533_cov_0.980583_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6091_length_533_cov_1.016990_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6102_length_532_cov_0.734793_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6127_length_530_cov_0.811736_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6142_length_529_cov_0.656863_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6141_length_529_cov_1.343137_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6140_length_529_cov_1.438725_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6159_length_528_cov_0.921376_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6158_length_528_cov_1.144963_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6172_length_527_cov_0.566502_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6170_length_527_cov_1.184729_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6174_length_527_cov_0.401478_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6171_length_527_cov_0.990148_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6173_length_527_cov_0.522167_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6182_length_526_cov_0.659259_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6180_length_526_cov_1.138272_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6179_length_526_cov_1.543210_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6181_length_526_cov_0.945679_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6193_length_525_cov_0.675743_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6209_length_524_cov_0.595533_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6207_length_524_cov_1.267990_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6208_length_524_cov_0.913151_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6223_length_523_cov_1.266169_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6222_length_523_cov_1.457711_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6241_length_522_cov_0.613466_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6242_length_522_cov_0.533666_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6255_length_521_cov_0.437500_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6252_length_521_cov_1.490000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6251_length_521_cov_1.945000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6253_length_521_cov_1.280000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6254_length_521_cov_0.692500_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6269_length_520_cov_0.230576_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6268_length_520_cov_1.350877_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6281_length_519_cov_1.618090_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6284_length_519_cov_0.919598_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6282_length_519_cov_1.233668_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6283_length_519_cov_1.115578_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6285_length_519_cov_0.829146_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6286_length_519_cov_0.635678_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6301_length_518_cov_1.576826_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6303_length_518_cov_0.778338_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6305_length_518_cov_0.375315_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6304_length_518_cov_0.765743_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6302_length_518_cov_1.173804_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6311_length_517_cov_0.914141_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6312_length_517_cov_0.800505_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6319_length_516_cov_1.387342_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6320_length_516_cov_0.612658_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6321_length_516_cov_0.577215_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6333_length_515_cov_1.774112_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6334_length_515_cov_1.568528_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6332_length_515_cov_1.784264_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6335_length_515_cov_1.294416_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6348_length_514_cov_1.862595_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6350_length_514_cov_0.893130_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6349_length_514_cov_0.974555_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6367_length_513_cov_0.752551_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6366_length_513_cov_0.829082_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6365_length_513_cov_0.839286_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6364_length_513_cov_1.035714_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6363_length_513_cov_1.298469_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6381_length_512_cov_1.687980_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6380_length_512_cov_1.900256_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6382_length_512_cov_0.956522_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6383_length_512_cov_0.749361_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6379_length_512_cov_1.953964_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6415_length_510_cov_1.233933_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6416_length_510_cov_0.820051_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6414_length_510_cov_1.318766_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6418_length_510_cov_0.529563_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6413_length_510_cov_1.416452_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6417_length_510_cov_0.557841_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6411_length_510_cov_1.969152_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6412_length_510_cov_1.791774_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6423_length_509_cov_1.731959_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6424_length_509_cov_1.626289_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6425_length_509_cov_0.837629_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6422_length_509_cov_1.873711_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6434_length_508_cov_0.478036_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6433_length_508_cov_1.196382_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6458_length_507_cov_0.663212_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6457_length_507_cov_0.707254_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6456_length_507_cov_0.844560_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6455_length_507_cov_0.875648_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6468_length_506_cov_1.007792_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6481_length_505_cov_1.914062_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6502_length_504_cov_0.770235_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6501_length_504_cov_1.185379_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6526_length_502_cov_0.645669_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6522_length_502_cov_1.577428_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6521_length_502_cov_1.874016_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6523_length_502_cov_1.356955_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6525_length_502_cov_1.057743_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6524_length_502_cov_1.346457_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6542_length_501_cov_1.373684_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6541_length_501_cov_1.439474_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6544_length_501_cov_0.644737_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6543_length_501_cov_1.234211_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6560_length_500_cov_0.245383_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6558_length_500_cov_1.762533_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6559_length_500_cov_1.356201_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6570_length_499_cov_0.878307_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6567_length_499_cov_1.351852_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6571_length_499_cov_0.849206_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6568_length_499_cov_1.280423_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6566_length_499_cov_1.849206_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6569_length_499_cov_1.005291_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6590_length_498_cov_1.432361_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6593_length_498_cov_0.517241_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6592_length_498_cov_0.978780_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6594_length_498_cov_0.424403_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6588_length_498_cov_1.753316_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6589_length_498_cov_1.530504_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6591_length_498_cov_1.198939_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6610_length_497_cov_1.539894_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6608_length_497_cov_1.888298_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6609_length_497_cov_1.593085_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6620_length_496_cov_1.194667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6619_length_496_cov_1.752000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6642_length_495_cov_0.598930_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6640_length_495_cov_1.663102_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6638_length_495_cov_1.778075_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6639_length_495_cov_1.778075_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6637_length_495_cov_1.783422_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6641_length_495_cov_1.160428_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6636_length_495_cov_1.810160_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6650_length_494_cov_1.040214_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6661_length_493_cov_1.344086_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6663_length_493_cov_0.970430_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6664_length_493_cov_0.873656_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6662_length_493_cov_1.290323_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6693_length_491_cov_1.897297_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6694_length_491_cov_0.545946_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6726_length_489_cov_1.157609_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6727_length_489_cov_1.114130_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6724_length_489_cov_1.423913_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6728_length_489_cov_1.029891_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6725_length_489_cov_1.293478_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6729_length_489_cov_0.869565_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6723_length_489_cov_1.540761_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6733_length_488_cov_1.702997_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6736_length_488_cov_0.828338_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6734_length_488_cov_1.648501_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6735_length_488_cov_1.166213_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6745_length_487_cov_0.863388_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6744_length_487_cov_0.931694_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6759_length_486_cov_0.819178_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6760_length_486_cov_0.553425_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6758_length_486_cov_1.479452_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6774_length_485_cov_1.706044_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6778_length_485_cov_0.637363_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6775_length_485_cov_1.082418_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6776_length_485_cov_0.846154_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6773_length_485_cov_1.854396_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6777_length_485_cov_0.826923_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6789_length_484_cov_0.699725_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6787_length_484_cov_1.055096_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6788_length_484_cov_0.754821_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6786_length_484_cov_1.209366_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6790_length_484_cov_0.655647_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6809_length_483_cov_0.723757_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6805_length_483_cov_1.660221_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6806_length_483_cov_1.505525_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6808_length_483_cov_0.925414_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6807_length_483_cov_1.069061_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6824_length_482_cov_0.490305_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6821_length_482_cov_1.479224_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6818_length_482_cov_1.698061_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6819_length_482_cov_1.592798_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6820_length_482_cov_1.556787_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6823_length_482_cov_0.631579_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6822_length_482_cov_1.249307_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6845_length_481_cov_1.369444_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6847_length_481_cov_0.850000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6848_length_481_cov_0.658333_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6846_length_481_cov_1.258333_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6844_length_481_cov_1.380556_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6869_length_480_cov_0.518106_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6870_length_480_cov_0.493036_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6883_length_479_cov_1.103352_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6884_length_479_cov_0.896648_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6893_length_478_cov_0.809524_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6892_length_478_cov_0.890756_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6916_length_477_cov_1.199438_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6929_length_476_cov_0.797183_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6930_length_476_cov_0.735211_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6931_length_476_cov_0.732394_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6928_length_476_cov_1.828169_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6941_length_475_cov_1.180791_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6942_length_475_cov_1.031073_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6966_length_474_cov_0.838527_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6965_length_474_cov_0.866856_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6960_length_474_cov_1.943343_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6961_length_474_cov_1.575071_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6962_length_474_cov_1.515581_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6964_length_474_cov_1.062323_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6963_length_474_cov_1.096317_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6980_length_473_cov_1.090909_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6982_length_473_cov_0.823864_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6984_length_473_cov_0.687500_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6985_length_473_cov_0.670455_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6983_length_473_cov_0.721591_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6981_length_473_cov_0.855114_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6979_length_473_cov_1.136364_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6990_length_472_cov_1.000000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6992_length_472_cov_0.529915_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6991_length_472_cov_0.632479_pilon [shovill] Removing low coverage contig (< 2 x): NODE_6993_length_472_cov_0.484330_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7010_length_471_cov_1.251429_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7011_length_471_cov_1.040000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7008_length_471_cov_1.740000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7012_length_471_cov_0.608571_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7009_length_471_cov_1.340000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7028_length_470_cov_0.647564_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7027_length_470_cov_1.444126_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7026_length_470_cov_1.670487_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7037_length_469_cov_0.899425_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7036_length_469_cov_1.448276_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7051_length_468_cov_1.680115_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7054_length_468_cov_1.144092_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7053_length_468_cov_1.296830_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7056_length_468_cov_0.536023_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7055_length_468_cov_0.916427_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7052_length_468_cov_1.406340_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7072_length_467_cov_0.757225_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7073_length_467_cov_0.502890_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7071_length_467_cov_1.736994_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7083_length_466_cov_1.826087_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7084_length_466_cov_0.779710_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7119_length_465_cov_0.784884_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7118_length_465_cov_0.802326_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7121_length_465_cov_0.351744_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7120_length_465_cov_0.752907_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7117_length_465_cov_1.563953_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7133_length_464_cov_0.580175_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7142_length_463_cov_0.988304_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7144_length_463_cov_0.944444_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7141_length_463_cov_1.274854_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7143_length_463_cov_0.985380_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7162_length_462_cov_1.970674_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7164_length_462_cov_1.607038_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7163_length_462_cov_1.917889_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7181_length_461_cov_0.617647_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7180_length_461_cov_1.120588_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7202_length_460_cov_0.749263_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7200_length_460_cov_1.292035_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7201_length_460_cov_1.141593_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7199_length_460_cov_1.333333_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7204_length_460_cov_0.280236_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7203_length_460_cov_0.592920_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7228_length_459_cov_1.121302_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7229_length_459_cov_0.772189_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7230_length_459_cov_0.473373_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7227_length_459_cov_1.230769_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7226_length_459_cov_1.488166_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7242_length_458_cov_0.931751_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7239_length_458_cov_1.738872_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7240_length_458_cov_1.347181_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7243_length_458_cov_0.706231_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7241_length_458_cov_0.997033_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7253_length_457_cov_1.383929_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7256_length_457_cov_0.541667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7254_length_457_cov_1.360119_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7255_length_457_cov_0.958333_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7257_length_457_cov_0.377976_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7279_length_456_cov_1.128358_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7277_length_456_cov_1.220896_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7280_length_456_cov_0.800000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7278_length_456_cov_1.140299_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7292_length_455_cov_0.664671_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7304_length_454_cov_1.627628_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7305_length_454_cov_1.507508_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7312_length_453_cov_1.036145_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7314_length_453_cov_0.969880_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7313_length_453_cov_0.978916_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7329_length_452_cov_1.350453_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7333_length_452_cov_0.649547_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7332_length_452_cov_0.673716_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7330_length_452_cov_0.891239_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7328_length_452_cov_1.543807_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7331_length_452_cov_0.676737_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7345_length_451_cov_1.327273_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7344_length_451_cov_1.633333_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7378_length_450_cov_0.583587_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7375_length_450_cov_1.872340_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7376_length_450_cov_1.820669_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7377_length_450_cov_0.708207_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7391_length_449_cov_1.073171_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7390_length_449_cov_1.128049_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7392_length_449_cov_0.786585_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7387_length_449_cov_1.875000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7393_length_449_cov_0.618902_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7389_length_449_cov_1.442073_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7388_length_449_cov_1.838415_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7403_length_448_cov_1.324159_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7406_length_448_cov_0.779817_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7405_length_448_cov_0.984709_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7404_length_448_cov_1.033639_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7432_length_447_cov_0.858896_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7431_length_447_cov_1.352761_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7430_length_447_cov_1.960123_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7452_length_446_cov_1.353846_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7450_length_446_cov_1.504615_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7451_length_446_cov_1.424615_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7453_length_446_cov_1.338462_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7455_length_446_cov_0.750769_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7454_length_446_cov_1.301538_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7456_length_446_cov_0.723077_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7466_length_445_cov_1.145062_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7464_length_445_cov_1.481481_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7467_length_445_cov_0.765432_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7465_length_445_cov_1.259259_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7488_length_444_cov_1.315789_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7490_length_444_cov_0.448916_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7485_length_444_cov_1.665635_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7487_length_444_cov_1.464396_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7486_length_444_cov_1.532508_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7489_length_444_cov_1.291022_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7510_length_443_cov_0.813665_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7512_length_443_cov_0.344720_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7509_length_443_cov_0.940994_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7507_length_443_cov_1.267081_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7508_length_443_cov_1.204969_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7505_length_443_cov_1.819876_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7506_length_443_cov_1.534161_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7511_length_443_cov_0.726708_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7523_length_442_cov_1.289720_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7527_length_442_cov_1.040498_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7529_length_442_cov_0.956386_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7524_length_442_cov_1.252336_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7526_length_442_cov_1.186916_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7528_length_442_cov_0.996885_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7530_length_442_cov_0.912773_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7525_length_442_cov_1.233645_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7554_length_441_cov_1.109375_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7555_length_441_cov_0.884375_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7553_length_441_cov_1.759375_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7571_length_440_cov_0.545455_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7569_length_440_cov_1.125392_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7568_length_440_cov_1.702194_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7570_length_440_cov_1.015674_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7578_length_439_cov_0.745283_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7601_length_438_cov_0.656151_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7615_length_437_cov_0.639241_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7616_length_437_cov_0.588608_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7636_length_436_cov_0.612698_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7633_length_436_cov_0.917460_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7632_length_436_cov_1.076190_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7634_length_436_cov_0.857143_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7637_length_436_cov_0.526984_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7635_length_436_cov_0.631746_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7660_length_435_cov_1.506369_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7661_length_435_cov_0.538217_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7679_length_434_cov_0.488818_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7677_length_434_cov_0.958466_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7678_length_434_cov_0.597444_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7687_length_433_cov_1.493590_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7688_length_433_cov_1.246795_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7691_length_433_cov_0.371795_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7686_length_433_cov_1.509615_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7689_length_433_cov_1.022436_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7690_length_433_cov_0.689103_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7720_length_432_cov_0.836013_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7718_length_432_cov_1.649518_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7719_length_432_cov_1.511254_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7732_length_431_cov_0.964516_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7733_length_431_cov_0.606452_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7731_length_431_cov_1.109677_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7746_length_430_cov_1.278317_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7747_length_430_cov_1.116505_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7748_length_430_cov_0.711974_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7745_length_430_cov_1.313916_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7749_length_430_cov_0.556634_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7744_length_430_cov_1.715210_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7778_length_429_cov_1.188312_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7775_length_429_cov_1.782468_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7776_length_429_cov_1.665584_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7780_length_429_cov_0.720779_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7779_length_429_cov_0.974026_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7777_length_429_cov_1.418831_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7798_length_428_cov_0.631922_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7795_length_428_cov_0.944625_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7797_length_428_cov_0.644951_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7796_length_428_cov_0.745928_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7807_length_427_cov_1.049020_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7806_length_427_cov_1.052288_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7809_length_427_cov_0.656863_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7808_length_427_cov_0.905229_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7832_length_426_cov_0.921311_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7834_length_426_cov_0.708197_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7833_length_426_cov_0.826230_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7835_length_426_cov_0.636066_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7855_length_425_cov_1.138158_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7857_length_425_cov_0.713816_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7856_length_425_cov_0.838816_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7869_length_424_cov_1.963696_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7870_length_424_cov_1.118812_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7876_length_424_cov_0.597360_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7873_length_424_cov_0.933993_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7872_length_424_cov_0.966997_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7875_length_424_cov_0.815182_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7871_length_424_cov_1.118812_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7874_length_424_cov_0.881188_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7908_length_423_cov_0.764901_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7906_length_423_cov_0.993377_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7902_length_423_cov_1.672185_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7903_length_423_cov_1.480132_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7905_length_423_cov_1.062914_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7907_length_423_cov_0.788079_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7904_length_423_cov_1.321192_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7925_length_422_cov_0.697674_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7924_length_422_cov_0.840532_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7923_length_422_cov_1.710963_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7937_length_421_cov_0.680000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7936_length_421_cov_0.753333_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7938_length_421_cov_0.356667_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7968_length_420_cov_0.528428_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7967_length_420_cov_1.327759_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7966_length_420_cov_1.381271_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7987_length_419_cov_1.372483_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7986_length_419_cov_1.607383_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7989_length_419_cov_1.187919_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7991_length_419_cov_0.711409_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7992_length_419_cov_0.620805_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7993_length_419_cov_0.359060_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7988_length_419_cov_1.191275_pilon [shovill] Removing low coverage contig (< 2 x): NODE_7990_length_419_cov_1.016779_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8006_length_418_cov_1.730640_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8007_length_418_cov_1.636364_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8009_length_418_cov_1.013468_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8008_length_418_cov_1.299663_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8010_length_418_cov_0.946128_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8035_length_417_cov_0.868243_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8036_length_417_cov_0.597973_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8049_length_416_cov_0.776271_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8048_length_416_cov_0.803390_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8044_length_416_cov_1.467797_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8047_length_416_cov_0.816949_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8045_length_416_cov_0.932203_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8050_length_416_cov_0.637288_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8046_length_416_cov_0.932203_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8065_length_415_cov_0.901361_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8064_length_415_cov_1.078231_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8066_length_415_cov_0.829932_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8060_length_415_cov_1.710884_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8063_length_415_cov_1.374150_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8061_length_415_cov_1.493197_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8062_length_415_cov_1.489796_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8096_length_414_cov_0.938567_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8099_length_414_cov_0.593857_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8097_length_414_cov_0.750853_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8095_length_414_cov_1.187713_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8098_length_414_cov_0.604096_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8124_length_412_cov_1.381443_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8122_length_412_cov_1.756014_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8125_length_412_cov_1.144330_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8126_length_412_cov_1.082474_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8121_length_412_cov_1.876289_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8123_length_412_cov_1.436426_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8160_length_411_cov_0.634483_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8156_length_411_cov_1.537931_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8159_length_411_cov_0.662069_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8158_length_411_cov_0.758621_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8157_length_411_cov_1.300000_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8174_length_410_cov_0.664360_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8175_length_410_cov_0.653979_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8173_length_410_cov_0.975779_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8171_length_410_cov_1.311419_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8172_length_410_cov_1.010381_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8192_length_409_cov_0.402778_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8189_length_409_cov_0.892361_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8190_length_409_cov_0.739583_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8191_length_409_cov_0.704861_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8187_length_409_cov_1.784722_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8188_length_409_cov_1.277778_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8216_length_408_cov_0.979094_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8215_length_408_cov_1.149826_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8217_length_408_cov_0.787456_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8218_length_408_cov_0.630662_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8244_length_407_cov_0.828671_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8243_length_407_cov_0.954545_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8246_length_407_cov_0.569930_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8242_length_407_cov_1.059441_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8240_length_407_cov_1.846154_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8241_length_407_cov_1.332168_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8245_length_407_cov_0.727273_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8260_length_406_cov_1.687719_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8263_length_406_cov_0.473684_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8262_length_406_cov_0.964912_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8259_length_406_cov_1.757895_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8261_length_406_cov_1.098246_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8299_length_405_cov_0.338028_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8297_length_405_cov_1.985915_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8298_length_405_cov_1.510563_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8315_length_404_cov_1.042403_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8314_length_404_cov_1.367491_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8316_length_404_cov_0.681979_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8342_length_403_cov_0.677305_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8333_length_403_cov_1.847518_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8334_length_403_cov_1.631206_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8340_length_403_cov_0.737589_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8343_length_403_cov_0.173759_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8336_length_403_cov_1.251773_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8339_length_403_cov_0.875887_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8335_length_403_cov_1.539007_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8337_length_403_cov_1.010638_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8341_length_403_cov_0.716312_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8338_length_403_cov_0.929078_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8369_length_402_cov_1.736655_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8375_length_402_cov_0.761566_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8371_length_402_cov_1.615658_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8372_length_402_cov_1.519573_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8373_length_402_cov_1.042705_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8370_length_402_cov_1.654804_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8376_length_402_cov_0.551601_pilon [shovill] Removing low coverage contig (< 2 x): NODE_8374_length_402_cov_0.918149_pilon [shovill] Removing low coverage contig (< 2 x): NODE_9426_length_349_cov_1.885965_pilon [shovill] Removing low coverage contig (< 2 x): NODE_9466_length_348_cov_1.612335_pilon [shovill] Removing low coverage contig (< 2 x): NODE_9481_length_347_cov_1.646018_pilon [shovill] Removing low coverage contig (< 2 x): NODE_9776_length_336_cov_0.944186_pilon [shovill] Removing low coverage contig (< 2 x): NODE_10305_length_313_cov_1.052083_pilon [shovill] Removing low coverage contig (< 2 x): NODE_10359_length_311_cov_1.384211_pilon [shovill] Removing low coverage contig (< 2 x): NODE_10518_length_304_cov_1.420765_pilon [shovill] Removing low coverage contig (< 2 x): NODE_10800_length_294_cov_1.797688_pilon [shovill] Removing low coverage contig (< 2 x): NODE_10928_length_288_cov_1.544910_pilon [shovill] Removing low coverage contig (< 2 x): NODE_11001_length_285_cov_1.292683_pilon [shovill] Removing low coverage contig (< 2 x): NODE_11017_length_283_cov_1.123457_pilon [shovill] Removing low coverage contig (< 2 x): NODE_11064_length_281_cov_1.537500_pilon [shovill] Removing low coverage contig (< 2 x): NODE_11139_length_279_cov_1.246835_pilon [shovill] Removing low coverage contig (< 2 x): NODE_11453_length_265_cov_1.104167_pilon [shovill] Removing low coverage contig (< 2 x): NODE_11609_length_260_cov_1.856115_pilon [shovill] Removing low coverage contig (< 2 x): NODE_11619_length_259_cov_1.224638_pilon [shovill] Removing low coverage contig (< 2 x): NODE_15056_length_240_cov_0.823529_pilon [shovill] Removing low coverage contig (< 2 x): NODE_15110_length_217_cov_1.927083_pilon [shovill] Removing low coverage contig (< 2 x): NODE_15114_length_214_cov_1.838710_pilon [shovill] Removing short contig (< 200 bp): NODE_15135_length_199_cov_8.256410_pilon [shovill] Removing short contig (< 200 bp): NODE_15139_length_198_cov_3.116883_pilon [shovill] Removing short contig (< 200 bp): NODE_15137_length_198_cov_5.987013_pilon [shovill] Removing short contig (< 200 bp): NODE_15136_length_198_cov_18.688312_pilon [shovill] Removing short contig (< 200 bp): NODE_15138_length_198_cov_5.935065_pilon [shovill] Removing short contig (< 200 bp): NODE_15140_length_197_cov_6.276316_pilon [shovill] Removing short contig (< 200 bp): NODE_15141_length_196_cov_52.706667_pilon [shovill] Removing short contig (< 200 bp): NODE_15142_length_196_cov_5.040000_pilon [shovill] Removing short contig (< 200 bp): NODE_15143_length_195_cov_6.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15146_length_194_cov_26.301370_pilon [shovill] Removing short contig (< 200 bp): NODE_15144_length_194_cov_37.876712_pilon [shovill] Removing short contig (< 200 bp): NODE_15147_length_194_cov_5.397260_pilon [shovill] Removing short contig (< 200 bp): NODE_15145_length_194_cov_28.123288_pilon [shovill] Removing short contig (< 200 bp): NODE_15149_length_191_cov_31.257143_pilon [shovill] Removing short contig (< 200 bp): NODE_15148_length_191_cov_56.142857_pilon [shovill] Removing short contig (< 200 bp): NODE_15151_length_190_cov_6.782609_pilon [shovill] Removing short contig (< 200 bp): NODE_15150_length_190_cov_8.304348_pilon [shovill] Removing short contig (< 200 bp): NODE_15152_length_189_cov_10.073529_pilon [shovill] Removing short contig (< 200 bp): NODE_15153_length_189_cov_6.647059_pilon [shovill] Removing short contig (< 200 bp): NODE_15154_length_188_cov_1.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15155_length_187_cov_5.636364_pilon [shovill] Removing short contig (< 200 bp): NODE_15156_length_186_cov_15.430769_pilon [shovill] Removing short contig (< 200 bp): NODE_15157_length_186_cov_13.153846_pilon [shovill] Removing short contig (< 200 bp): NODE_15158_length_185_cov_6.171875_pilon [shovill] Removing short contig (< 200 bp): NODE_15159_length_185_cov_4.906250_pilon [shovill] Removing short contig (< 200 bp): NODE_15160_length_184_cov_62.809524_pilon [shovill] Removing short contig (< 200 bp): NODE_15161_length_184_cov_5.666667_pilon [shovill] Removing short contig (< 200 bp): NODE_15162_length_183_cov_5.725806_pilon [shovill] Removing short contig (< 200 bp): NODE_15164_length_181_cov_6.316667_pilon [shovill] Removing short contig (< 200 bp): NODE_15163_length_181_cov_17.733333_pilon [shovill] Removing short contig (< 200 bp): NODE_15166_length_180_cov_5.237288_pilon [shovill] Removing short contig (< 200 bp): NODE_15165_length_180_cov_5.847458_pilon [shovill] Removing short contig (< 200 bp): NODE_15167_length_179_cov_2.965517_pilon [shovill] Removing short contig (< 200 bp): NODE_15168_length_179_cov_2.551724_pilon [shovill] Removing short contig (< 200 bp): NODE_15170_length_177_cov_43.125000_pilon [shovill] Removing short contig (< 200 bp): NODE_15169_length_177_cov_43.535714_pilon [shovill] Removing short contig (< 200 bp): NODE_15171_length_176_cov_10.381818_pilon [shovill] Removing short contig (< 200 bp): NODE_15172_length_176_cov_7.690909_pilon [shovill] Removing short contig (< 200 bp): NODE_15173_length_175_cov_10.722222_pilon [shovill] Removing short contig (< 200 bp): NODE_15175_length_174_cov_5.377358_pilon [shovill] Removing short contig (< 200 bp): NODE_15174_length_174_cov_12.943396_pilon [shovill] Removing short contig (< 200 bp): NODE_15176_length_172_cov_8.294118_pilon [shovill] Removing short contig (< 200 bp): NODE_15180_length_171_cov_5.840000_pilon [shovill] Removing short contig (< 200 bp): NODE_15178_length_171_cov_8.780000_pilon [shovill] Removing short contig (< 200 bp): NODE_15179_length_171_cov_6.900000_pilon [shovill] Removing short contig (< 200 bp): NODE_15177_length_171_cov_10.440000_pilon [shovill] Removing short contig (< 200 bp): NODE_15181_length_170_cov_24.469388_pilon [shovill] Removing short contig (< 200 bp): NODE_15182_length_169_cov_11.979167_pilon [shovill] Removing short contig (< 200 bp): NODE_15183_length_168_cov_6.170213_pilon [shovill] Removing short contig (< 200 bp): NODE_15184_length_167_cov_8.478261_pilon [shovill] Removing short contig (< 200 bp): NODE_15185_length_166_cov_34.333333_pilon [shovill] Removing short contig (< 200 bp): NODE_15186_length_165_cov_26.454545_pilon [shovill] Removing short contig (< 200 bp): NODE_15187_length_165_cov_6.068182_pilon [shovill] Removing short contig (< 200 bp): NODE_15188_length_164_cov_1.860465_pilon [shovill] Removing short contig (< 200 bp): NODE_15189_length_163_cov_27.714286_pilon [shovill] Removing short contig (< 200 bp): NODE_15190_length_163_cov_1.333333_pilon [shovill] Removing short contig (< 200 bp): NODE_15192_length_162_cov_68.439024_pilon [shovill] Removing short contig (< 200 bp): NODE_15193_length_162_cov_66.219512_pilon [shovill] Removing short contig (< 200 bp): NODE_15191_length_162_cov_83.756098_pilon [shovill] Removing short contig (< 200 bp): NODE_15194_length_161_cov_53.050000_pilon [shovill] Removing short contig (< 200 bp): NODE_15196_length_161_cov_5.275000_pilon [shovill] Removing short contig (< 200 bp): NODE_15195_length_161_cov_43.750000_pilon [shovill] Removing short contig (< 200 bp): NODE_15197_length_160_cov_46.102564_pilon [shovill] Removing short contig (< 200 bp): NODE_15199_length_159_cov_71.157895_pilon [shovill] Removing short contig (< 200 bp): NODE_15198_length_159_cov_96.947368_pilon [shovill] Removing short contig (< 200 bp): NODE_15200_length_159_cov_7.236842_pilon [shovill] Removing short contig (< 200 bp): NODE_15202_length_158_cov_8.324324_pilon [shovill] Removing short contig (< 200 bp): NODE_15201_length_158_cov_58.567568_pilon [shovill] Removing short contig (< 200 bp): NODE_15205_length_157_cov_12.611111_pilon [shovill] Removing short contig (< 200 bp): NODE_15203_length_157_cov_37.944444_pilon [shovill] Removing short contig (< 200 bp): NODE_15204_length_157_cov_13.833333_pilon [shovill] Removing short contig (< 200 bp): NODE_15207_length_156_cov_38.428571_pilon [shovill] Removing short contig (< 200 bp): NODE_15206_length_156_cov_148.685714_pilon [shovill] Removing short contig (< 200 bp): NODE_15208_length_155_cov_50.470588_pilon [shovill] Removing short contig (< 200 bp): NODE_15209_length_155_cov_46.058824_pilon [shovill] Removing short contig (< 200 bp): NODE_15211_length_154_cov_7.242424_pilon [shovill] Removing short contig (< 200 bp): NODE_15210_length_154_cov_16.939394_pilon [shovill] Removing short contig (< 200 bp): NODE_15213_length_153_cov_1.218750_pilon [shovill] Removing short contig (< 200 bp): NODE_15212_length_153_cov_75.812500_pilon [shovill] Removing short contig (< 200 bp): NODE_15214_length_152_cov_31.483871_pilon [shovill] Removing short contig (< 200 bp): NODE_15215_length_152_cov_9.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15216_length_151_cov_18.033333_pilon [shovill] Removing short contig (< 200 bp): NODE_15218_length_150_cov_3.241379_pilon [shovill] Removing short contig (< 200 bp): NODE_15217_length_150_cov_9.620690_pilon [shovill] Removing short contig (< 200 bp): NODE_15219_length_149_cov_38.285714_pilon [shovill] Removing short contig (< 200 bp): NODE_15220_length_148_cov_35.629630_pilon [shovill] Removing short contig (< 200 bp): NODE_15221_length_147_cov_15.884615_pilon [shovill] Removing short contig (< 200 bp): NODE_15222_length_146_cov_12.400000_pilon [shovill] Removing short contig (< 200 bp): NODE_15223_length_144_cov_6.652174_pilon [shovill] Removing short contig (< 200 bp): NODE_15224_length_144_cov_5.608696_pilon [shovill] Removing short contig (< 200 bp): NODE_15225_length_143_cov_6.681818_pilon [shovill] Removing short contig (< 200 bp): NODE_15226_length_142_cov_22.476190_pilon [shovill] Removing short contig (< 200 bp): NODE_15227_length_142_cov_3.333333_pilon [shovill] Removing short contig (< 200 bp): NODE_15228_length_141_cov_23.600000_pilon [shovill] Removing short contig (< 200 bp): NODE_15232_length_140_cov_16.368421_pilon [shovill] Removing short contig (< 200 bp): NODE_15231_length_140_cov_22.105263_pilon [shovill] Removing short contig (< 200 bp): NODE_15229_length_140_cov_33.526316_pilon [shovill] Removing short contig (< 200 bp): NODE_15233_length_140_cov_5.736842_pilon [shovill] Removing short contig (< 200 bp): NODE_15230_length_140_cov_23.157895_pilon [shovill] Removing short contig (< 200 bp): NODE_15234_length_139_cov_40.611111_pilon [shovill] Removing short contig (< 200 bp): NODE_15235_length_138_cov_2.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15236_length_138_cov_1.117647_pilon [shovill] Removing short contig (< 200 bp): NODE_15237_length_135_cov_50.857143_pilon [shovill] Removing short contig (< 200 bp): NODE_15238_length_134_cov_46.230769_pilon [shovill] Removing short contig (< 200 bp): NODE_15240_length_131_cov_29.700000_pilon [shovill] Removing short contig (< 200 bp): NODE_15242_length_131_cov_21.500000_pilon [shovill] Removing short contig (< 200 bp): NODE_15241_length_131_cov_24.300000_pilon [shovill] Removing short contig (< 200 bp): NODE_15239_length_131_cov_143.300000_pilon [shovill] Removing short contig (< 200 bp): NODE_15243_length_130_cov_2.333333_pilon [shovill] Removing short contig (< 200 bp): NODE_15245_length_129_cov_1.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15244_length_129_cov_53.125000_pilon [shovill] Removing short contig (< 200 bp): NODE_15246_length_128_cov_63.428571_pilon [shovill] Removing short contig (< 200 bp): NODE_15248_length_128_cov_28.428571_pilon [shovill] Removing short contig (< 200 bp): NODE_15247_length_128_cov_34.857143_pilon [shovill] Removing short contig (< 200 bp): NODE_15249_length_127_cov_143.333333_pilon [shovill] Removing short contig (< 200 bp): NODE_15250_length_126_cov_12.800000_pilon [shovill] Removing short contig (< 200 bp): NODE_15252_length_126_cov_3.400000_pilon [shovill] Removing short contig (< 200 bp): NODE_15251_length_126_cov_5.800000_pilon [shovill] Removing short contig (< 200 bp): NODE_15257_length_125_cov_18.500000_pilon [shovill] Removing short contig (< 200 bp): NODE_15260_length_125_cov_11.500000_pilon [shovill] Removing short contig (< 200 bp): NODE_15254_length_125_cov_30.750000_pilon [shovill] Removing short contig (< 200 bp): NODE_15258_length_125_cov_18.250000_pilon [shovill] Removing short contig (< 200 bp): NODE_15261_length_125_cov_8.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15259_length_125_cov_15.250000_pilon [shovill] Removing short contig (< 200 bp): NODE_15253_length_125_cov_128.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15256_length_125_cov_19.500000_pilon [shovill] Removing short contig (< 200 bp): NODE_15255_length_125_cov_21.750000_pilon [shovill] Removing short contig (< 200 bp): NODE_15262_length_124_cov_3.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15263_length_123_cov_43.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15264_length_123_cov_6.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15265_length_123_cov_1.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15267_length_122_cov_124.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15268_length_122_cov_1.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15269_length_122_cov_1.000000_pilon [shovill] Removing short contig (< 200 bp): NODE_15266_length_122_cov_1976.000000_pilon [shovill] Assembly is 8426018, estimated genome size was 3000000 (+180.87%) [shovill] Using genome graph file 'spades/assembly_graph_with_scaffolds.gfa' => 'contigs.gfa' [shovill] Walltime used: 10 min 49 sec [shovill] Results in: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter [shovill] Final assembly graph: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/contigs.gfa [shovill] Final assembly contigs: /DATB/markop/CPB/CPB_rcf_DNAseq/shovill/Enterobacter/contigs.fa [shovill] It contains 13709 (min=200) contigs totalling 8426018 bp. [shovill] Remember, an assembly is just a _hypothesis_ of the original sequence! [shovill] Done.