/home/administrator/conda2/envs/spades/bin/quast.py -t 30 --glimmer --rna-finding --conserved-genes-finding ./shovill/Lactococcus/spades.fasta --min-contig 200 --pe1 ./fq/incl1358_R1.fastq --pe2 ./fq/incl1358_R2.fastq -o ../CPB_rcf_DNAseq/quast/Lactococcus Version: 5.0.2 System information: OS: Linux-4.13.0-41-generic-x86_64-with-debian-stretch-sid (linux_64) Python version: 3.6.11 CPUs number: 32 Started: 2021-01-21 14:00:09 Logging to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/quast.log CWD: /DATB/markop/CPB/CPB_rcf_DNAseq Main parameters: MODE: default, threads: 30, minimum contig length: 200, minimum alignment length: 65, \ ambiguity: one, threshold for extensive misassembly size: 1000 Contigs: Pre-processing... ./shovill/Lactococcus/spades.fasta ==> spades 2021-01-21 14:00:09 Running Reads analyzer... NOTICE: Improper read names in /DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1358_R1.fastq (forward reads)! Names should end with /1 (for forward reads) or /2 (for reverse reads) but @ST-E00318:496:HHWM5CCXY:2:1101:16995:1713 was found! QUAST will attempt to fix read names. NOTICE: Improper read names in /DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1358_R2.fastq (reverse reads)! Names should end with /1 (for forward reads) or /2 (for reverse reads) but @ST-E00318:496:HHWM5CCXY:2:1101:16995:1713 was found! QUAST will attempt to fix read names. Logging to files /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/reads_stats/reads_stats.log and /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/reads_stats/reads_stats.err... Pre-processing reads... Running BWA... /home/administrator/conda2/envs/spades/bin/bwa index -p /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/quast_corrected_input/spades.fasta \ /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/quast_corrected_input/spades.fasta \ >> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/reads_stats/reads_stats.err 2>> \ /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/reads_stats/reads_stats.err /home/administrator/conda2/envs/spades/bin/bwa mem -t 15 /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/quast_corrected_input/spades.fasta \ /DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1358_R1.fastq /DATB/markop/CPB/CPB_rcf_DNAseq/fq/incl1358_R2.fastq \ > spades.pe1.sam 2>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/reads_stats/reads_stats.err /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \ view -t 15 -h -S -f bam spades.pe1.sam > spades.pe1.bam 2>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/reads_stats/reads_stats.err /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \ markdup -r -t 15 --tmpdir /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/reads_stats \ spades.pe1.bam spades.pe1.dedup.bam 2>> /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/reads_stats/reads_stats.err Done. /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \ view -H -S quast/Lactococcus/reads_stats/temp_output/spades.sam > quast/Lactococcus/reads_stats/spades.sam.header \ 2>> quast/Lactococcus/reads_stats/reads_stats.err Sorting SAM-file... /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \ view -t 15 -h -S -f bam quast/Lactococcus/reads_stats/temp_output/spades.all.correct.sam \ > quast/Lactococcus/reads_stats/temp_output/spades.bam 2>> quast/Lactococcus/reads_stats/reads_stats.err /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/sambamba/sambamba_linux \ flagstat -t 15 quast/Lactococcus/reads_stats/temp_output/spades.bam > quast/Lactococcus/reads_stats/spades.stat \ 2>> quast/Lactococcus/reads_stats/reads_stats.err /usr/bin/bamToBed -i quast/Lactococcus/reads_stats/temp_output/spades.bam > quast/Lactococcus/reads_stats/temp_output/spades.bed \ 2>> quast/Lactococcus/reads_stats/reads_stats.err sort -k1,1 -k2,2n quast/Lactococcus/reads_stats/temp_output/spades.bed > quast/Lactococcus/reads_stats/temp_output/spades.sorted.bed \ 2>> quast/Lactococcus/reads_stats/reads_stats.err /usr/bin/bedtools genomecov -i quast/Lactococcus/reads_stats/temp_output/spades.sorted.bed \ -g quast/Lactococcus/quast_corrected_input/spades.fasta.fai > quast/Lactococcus/reads_stats/temp_output/spades.genomecov \ 2>> quast/Lactococcus/reads_stats/reads_stats.err Analysis is finished. Creating total report... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/reads_stats/reads_report.txt, reads_report.tsv, and reads_report.tex Done. 2021-01-21 15:35:53 Running Basic statistics processor... Contig files: spades Calculating N50 and L50... spades, N50 = 69806, L50 = 10, Total length = 2541371, GC % = 34.97, # N's per 100 kbp = 0.00 Drawing Nx plot... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/basic_stats/Nx_plot.pdf Drawing cumulative plot... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/basic_stats/cumulative_plot.pdf Drawing GC content plot... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/basic_stats/GC_content_plot.pdf Drawing spades GC content plot... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/basic_stats/spades_GC_content_plot.pdf Drawing Coverage histogram (bin size: 5x)... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/basic_stats/coverage_histogram.pdf Drawing spades coverage histogram (bin size: 5x)... saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/basic_stats/spades_coverage_histogram.pdf Done. 2021-01-21 15:35:54 Running GlimmerHMM... spades /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/0.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/0.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/1.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/1.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/2.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/2.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/3.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/3.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/4.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/4.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/5.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/5.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/6.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/6.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/7.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/7.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/8.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/8.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/9.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/9.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/10.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/10.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/11.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/11.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/12.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/12.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/13.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/13.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/14.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/14.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/15.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/15.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/16.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/16.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/17.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/17.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/18.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/18.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/19.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/19.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/20.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/20.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/21.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/21.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/22.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/22.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/23.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/23.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/24.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/24.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/25.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/25.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/26.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/26.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/27.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/27.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/28.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/28.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/29.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/29.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/30.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/30.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/31.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/31.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/32.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/32.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/33.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/33.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/34.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/34.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/35.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/35.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/36.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/36.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/37.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/37.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/38.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/38.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/39.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/39.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/40.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/40.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/41.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/41.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/42.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/42.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/43.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/43.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/44.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/44.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/45.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/45.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/46.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/46.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/47.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/47.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/48.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/48.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/49.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/49.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/50.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/50.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/51.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/51.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/52.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/52.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/53.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/53.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/54.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/54.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/55.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/55.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/56.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/56.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/57.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/57.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/58.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/58.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/59.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/59.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/60.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/60.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/61.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/61.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/62.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/62.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/63.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/63.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/64.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/64.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/65.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/65.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/66.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/66.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/67.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/67.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/68.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/68.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/69.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/69.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/70.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/70.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/71.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/71.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/72.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/72.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/73.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/73.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/74.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/74.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/75.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/75.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/76.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/76.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/77.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/77.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/78.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/78.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/79.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/79.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/80.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/80.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/81.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/81.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/82.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/82.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/83.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/83.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/84.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/84.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/85.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/85.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/86.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/86.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/87.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/87.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/88.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/88.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/89.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/89.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/90.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/90.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/91.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/91.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/92.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/92.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/93.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/93.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/94.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/94.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/95.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/95.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/96.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/96.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/97.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/97.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/98.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/98.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/99.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/99.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/100.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/100.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/101.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/101.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/102.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/102.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/103.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/103.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/104.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/104.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/105.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/105.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/106.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/106.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/107.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/107.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/108.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/108.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/109.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/109.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/110.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/110.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/111.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/111.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/112.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/112.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/113.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/113.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/114.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/114.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/115.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/115.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/116.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/116.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/117.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/117.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/118.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/118.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/119.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/119.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/120.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/120.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/121.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/121.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/122.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/122.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/123.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/123.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/124.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/124.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/125.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/125.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/126.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/126.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/127.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/127.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/128.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/128.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/129.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/129.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/130.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/130.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/131.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/131.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/132.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/132.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/133.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/133.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/134.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/134.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/135.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/135.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/136.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/136.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/137.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/137.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/138.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/138.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/139.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/139.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/140.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/140.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/141.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/141.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/142.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/142.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/143.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/143.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/144.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/144.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/145.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/145.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/146.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/146.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/147.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/147.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/148.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/148.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/149.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/149.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/150.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/150.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/151.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/151.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/152.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/152.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/153.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/153.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/154.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/154.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/155.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/155.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/156.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/156.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/157.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/157.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/158.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/158.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/159.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/159.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/160.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/160.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/161.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/161.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/162.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/162.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/163.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/163.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/164.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/164.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/165.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/165.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/166.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/166.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/167.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/167.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/168.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/168.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/169.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/169.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/170.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/170.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/171.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/171.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/172.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/172.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/173.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/173.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/174.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/174.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/175.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/175.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/176.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/176.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/177.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/177.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/178.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/178.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/179.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/179.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/180.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/180.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/181.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/181.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/182.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/182.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/183.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/183.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/184.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/184.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/185.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/185.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/186.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/186.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/187.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/187.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/188.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/188.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/189.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/189.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/190.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/190.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/191.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/191.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/192.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/192.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/193.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/193.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/194.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/194.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/195.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/195.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/196.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/196.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/197.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/197.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/198.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/198.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/199.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/199.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/200.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/200.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/201.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/201.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/202.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/202.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/203.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/203.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/204.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/204.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/205.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/205.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/206.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/206.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/207.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/207.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/208.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/208.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/209.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/209.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/210.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/210.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/211.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/211.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/212.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/212.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/213.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/213.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/214.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/214.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/215.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/215.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/216.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/216.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/217.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/217.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/218.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/218.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/219.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/219.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/220.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/220.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/221.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/221.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/222.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/222.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/223.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/223.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/224.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/224.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/225.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/225.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/226.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/226.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/227.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/227.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/228.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/228.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/229.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/229.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/230.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/230.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/231.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/231.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/232.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/232.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/233.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/233.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/234.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/234.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/235.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/235.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/236.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/236.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/237.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/237.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/238.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/238.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/239.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/239.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/240.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/240.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr /home/administrator/conda2/envs/spades/bin/glimmerhmm quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/241.fasta \ -d /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/glimmer/trained/arabidopsis \ -g -o quast/Lactococcus/predicted_genes/tmp/tmpkvwpqne6/241.gff >> quast/Lactococcus/predicted_genes/spades_glimmer.stderr \ 2>> quast/Lactococcus/predicted_genes/spades_glimmer.stderr Genes = 952 unique, 952 total Predicted genes (GFF): /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/predicted_genes/spades_glimmer_genes.gff.gz Done. 2021-01-21 15:36:16 Running Barrnap... Logging to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/predicted_genes/barrnap.log... /home/administrator/conda2/envs/spades/lib/python3.6/site-packages/quast_libs/barrnap/bin/barrnap \ --quiet -k bac --threads 30 quast/Lactococcus/quast_corrected_input/spades.fasta > \ quast/Lactococcus/predicted_genes/spades.rna.gff 2>> quast/Lactococcus/predicted_genes/barrnap.log Ribosomal RNA genes = 7 Predicted genes (GFF): /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/predicted_genes/spades.rna.gff Done. 2021-01-21 15:36:17 Running BUSCO... Logs and results will be saved under /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/busco_stats... Done. 2021-01-21 15:36:58 Creating large visual summaries... This may take a while: press Ctrl-C to skip this step.. 1 of 2: Creating Icarus viewers... 2 of 2: Creating PDF with all tables and plots... Done 2021-01-21 15:36:59 RESULTS: Text versions of total report are saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/report.txt, report.tsv, and report.tex Text versions of transposed total report are saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/transposed_report.txt, transposed_report.tsv, and transposed_report.tex HTML version (interactive tables and plots) is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/report.html PDF version (tables and plots) is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/report.pdf Icarus (contig browser) is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/icarus.html Log is saved to /DATB/markop/CPB/CPB_rcf_DNAseq/quast/Lactococcus/quast.log Finished: 2021-01-21 15:36:59 Elapsed time: 1:36:50.306818 NOTICEs: 2; WARNINGs: 0; non-fatal ERRORs: 0 Thank you for using QUAST!