gffread -x /DATA/mojcaj/CDSfasta.fa -g /DATA/mojcaj/NbAUSv1.0_2019-11-29.fasta /DATA/mojcaj/NbAUSv1.0_AUGUSTUS-genes_2019-12-02.gff3

gffread -y /DATA/mojcaj/ProteinFasta.fa -g /DATA/mojcaj/NbAUSv1.0_2019-11-29.fasta /DATA/mojcaj/NbAUSv1.0_AUGUSTUS-genes_2019-12-02.gff3




Error: discarding overlapping duplicate gene feature (2717287-2733624) with ID=g65341
Error: discarding overlapping duplicate gene feature (89061700-89064143) with ID=g69190
Error: discarding overlapping duplicate gene feature (58785328-58791664) with ID=g67772
Error: discarding overlapping duplicate gene feature (74981446-74988480) with ID=g68435
Error: discarding overlapping duplicate gene feature (96744896-96751516) with ID=g69553
Error: discarding overlapping duplicate gene feature (144349719-144358669) with ID=g71652
Error: discarding overlapping duplicate gene feature (138441964-138445991) with ID=g71354
Error: discarding overlapping duplicate gene feature (170635340-170641786) with ID=g73066
Error: discarding overlapping duplicate gene feature (34376450-34381501) with ID=g81899
Error: discarding overlapping duplicate gene feature (57141738-57147615) with ID=g83005
Error: discarding overlapping duplicate gene feature (103066550-103074714) with ID=g85652
Error: discarding overlapping duplicate gene feature (67313257-67317081) with ID=g83453
Error: discarding overlapping duplicate gene feature (32633066-32647538) with ID=g95465
Error: discarding overlapping duplicate gene feature (53305577-53313953) with ID=g96331
Error: discarding overlapping duplicate gene feature (90885954-90893041) with ID=g98321
Error: discarding overlapping duplicate gene feature (44363981-44370318) with ID=g128300
Error: discarding overlapping duplicate gene feature (91906771-91915053) with ID=g130657
Error: discarding overlapping duplicate gene feature (92765285-92776476) with ID=g130707
Error: discarding overlapping duplicate gene feature (101861816-101866631) with ID=g131275
Error: discarding overlapping duplicate gene feature (32847246-32850995) with ID=g60295
Error: discarding overlapping duplicate gene feature (74056687-74062808) with ID=g62578
Error: discarding overlapping duplicate gene feature (3502625-3514276) with ID=g87650
Error: discarding overlapping duplicate gene feature (22182430-22192485) with ID=g88555
Error: discarding overlapping duplicate gene feature (64321707-64327410) with ID=g90611
Error: discarding overlapping duplicate gene feature (99722685-99731664) with ID=g92363
Error: discarding overlapping duplicate gene feature (38032590-38056596) with ID=g1977
Error: discarding overlapping duplicate gene feature (74838428-74845952) with ID=g4066
Error: discarding overlapping duplicate gene feature (10999567-11004415) with ID=g106854
Error: discarding overlapping duplicate gene feature (24948791-24955000) with ID=g107502
Error: discarding overlapping duplicate gene feature (112639936-112651097) with ID=g111973
Error: discarding overlapping duplicate gene feature (8479634-8489031) with ID=g101119
Error: discarding overlapping duplicate gene feature (12844006-12863720) with ID=g101427
Error: discarding overlapping duplicate gene feature (89389643-89403356) with ID=g104909
Error: discarding overlapping duplicate gene feature (104973636-104985361) with ID=g79630
Error: discarding overlapping duplicate gene feature (11924765-11932508) with ID=g7028
Error: discarding overlapping duplicate gene feature (66523916-66534745) with ID=g9510
Error: discarding overlapping duplicate gene feature (155708737-155714551) with ID=g13494
Error: discarding overlapping duplicate gene feature (157264077-157268724) with ID=g13571
Error: discarding overlapping duplicate gene feature (134669772-134679653) with ID=g12365
Error: discarding overlapping duplicate gene feature (142551874-142558204) with ID=g12768
Error: discarding overlapping duplicate gene feature (147966582-147979526) with ID=g13030
Error: discarding overlapping duplicate gene feature (165782374-165784991) with ID=g14025
Error: discarding overlapping duplicate gene feature (168683197-168690174) with ID=g14209
Error: discarding overlapping duplicate gene feature (86728088-86750278) with ID=g33283
Error: discarding overlapping duplicate gene feature (60681546-60694080) with ID=g32149
Error: discarding overlapping duplicate gene feature (132488737-132519734) with ID=g43463
Error: discarding overlapping duplicate gene feature (137890089-137900822) with ID=g43867
Error: discarding overlapping duplicate gene feature (75651119-75678242) with ID=g41009
Error: discarding overlapping duplicate gene feature (93881296-93889316) with ID=g41783
Error: discarding overlapping duplicate gene feature (41448726-41459345) with ID=g16960
Error: discarding overlapping duplicate gene feature (70547161-70559339) with ID=g18470
Error: discarding overlapping duplicate gene feature (119162620-119172116) with ID=g20646
Error: discarding overlapping duplicate gene feature (133750874-133786654) with ID=g21274
Error: discarding overlapping duplicate gene feature (24233709-24238932) with ID=g46850
Error: discarding overlapping duplicate gene feature (8234692-8243414) with ID=g46098
Error: discarding overlapping duplicate gene feature (65541629-65548785) with ID=g48597
Error: discarding overlapping duplicate gene feature (114474780-114481867) with ID=g50591
Error: discarding overlapping duplicate gene feature (58839505-58843474) with ID=g122753
Error: discarding overlapping duplicate gene feature (82106361-82116512) with ID=g123875
Error: discarding overlapping duplicate gene feature (81597382-81605920) with ID=g116599
Error: discarding overlapping duplicate gene feature (7760515-7764254) with ID=g22826
Error: discarding overlapping duplicate gene feature (10020706-10027925) with ID=g22965
Error: discarding overlapping duplicate gene feature (21934239-21941144) with ID=g23824
Error: discarding overlapping duplicate gene feature (28913686-28922959) with ID=g24338
Error: discarding overlapping duplicate gene feature (105614646-105621013) with ID=g27989
Error: discarding overlapping duplicate gene feature (52134478-52140114) with ID=g25768
Error: discarding overlapping duplicate gene feature (74209086-74219346) with ID=g26820