FAIRDOMHub The FAIRDOMHub is built upon the SEEK software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. community@fair-dom.org 384 Continuously, state of 2022-02-22 18:05:45.564881 2022-02-22 18:05:45.564881 community@fair-dom.org https://fairdomhub.org Basic kinetic model of Escherichia coli's electron transport chain (ETC) Basic kinetic model of Escherichia coli's electron transport chain (ETC) Sebastian Henkel FAIRDOMHub Models https://fairdomhub.org/models/16?version=1 SBML University of Stuttgart Development of agent-based models describing the response of Escherichia coli to changes in oxygen availability Development of agent-based models describing the response of Escherichia coli to changes in oxygen availability Afsaneh Maleki-Dizaji FAIRDOMHub Models https://fairdomhub.org/models/18?version=1 University of Sheffield sigB-response_starvation_shakeflask sigB-response_starvation_shakeflask Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/20?version=1 Matlab package University of Rostock Model for ED pathway in Sulfolobus solfataricus Model for ED pathway in Sulfolobus solfataricus Peter Ruoff FAIRDOMHub Models https://fairdomhub.org/models/21?version=1 University of Stavanger A Mathematical Model of Metabolism and Regulation Provides a Systems-Level View of the Oxygen Response of Escherichia coli A Mathematical Model of Metabolism and Regulation Provides a Systems-Level View of the Oxygen Response of Escherichia coli Michael Ederer FAIRDOMHub Models https://fairdomhub.org/models/23?version=5 Mathematica University of Stuttgart BSA115-sigB-adaptation BSA115-sigB-adaptation Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/24?version=1 Matlab package University of Rostock COPASI model of L. lactis glycolysis COPASI model of L. lactis glycolysis Mark Musters FAIRDOMHub Models https://fairdomhub.org/models/25?version=2 Copasi Wageningen University & Research SBML file of L. lactis glycolysis SBML file of L. lactis glycolysis Mark Musters FAIRDOMHub Models https://fairdomhub.org/models/26?version=1 SBML Wageningen University & Research Preliminary overview of the effect of KCl stress on protein interaction networks involved in the regulation of the potassium transporter Trk1. Preliminary overview of the effect of KCl stress on protein interaction networks involved in the regulation of the potassium transporter Trk1. None given (likely automatic harvesting) FAIRDOMHub Models https://fairdomhub.org/models/30?version=1 Transcription factor competition theoretical analysis Transcription factor competition theoretical analysis Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/31?version=1 Matlab package University of Rostock Mathematical modelling of the sporulation-initiation network in Bacillus subtilis. Mathematical modelling of the sporulation-initiation network in Bacillus subtilis. Sara Jabbari FAIRDOMHub Models https://fairdomhub.org/models/33?version=1 Matlab package University of Nottingham bakker bakker Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/34?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University bakkerxml bakkerxml Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/36?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University ScoCyc 14.5 release bundle ScoCyc 14.5 release bundle Jay Moore FAIRDOMHub Models https://fairdomhub.org/models/38?version=2 BioPAX University of Warwick Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum None given (likely automatic harvesting) FAIRDOMHub Models https://fairdomhub.org/models/42?version=1 SBML solventogenesis solventogenesis Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/43?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University haus1 haus1 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/44?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Kinetic model of Escherichia coli's electron transport chain (ETC) coupled to a simplified growth model Kinetic model of Escherichia coli's electron transport chain (ETC) coupled to a simplified growth model Sebastian Henkel FAIRDOMHub Models https://fairdomhub.org/models/45?version=2 SBML University of Stuttgart BSA115 Post-transcriptional instability BSA115 Post-transcriptional instability Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/46?version=14 SBML University of Rostock Test2 Test2 Malgorzata Adamczyk FAIRDOMHub Models https://fairdomhub.org/models/47?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester Warsaw University of Technology BSA sigB-proteolysis model BSA sigB-proteolysis model Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/48?version=2 SBML University of Rostock BSA115-transcription inhibition model BSA115-transcription inhibition model Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/49?version=3 SBML University of Rostock BSA115-lacz-synth BSA115-lacz-synth Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/50?version=2 SBML University of Rostock e.coli-central-carbon_chassagnole-et-al e.coli-central-carbon_chassagnole-et-al Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/51?version=1 SBML University of Rostock Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - first experiment Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - first experiment Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/55?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - second experiment Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - second experiment Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/56?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - third experiment Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - third experiment Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/57?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - fourth experiment Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - fourth experiment Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/58?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Mathematical Modelling of the Sporulation-Initiation Network in Bacillus Subtilis Revealing the Dual Role of the Putative Quorum-Sensing Signal Molecule PhrA Mathematical Modelling of the Sporulation-Initiation Network in Bacillus Subtilis Revealing the Dual Role of the Putative Quorum-Sensing Signal Molecule PhrA Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/59?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Mathematical modelling of the agr operon in Staphylococcus aureus Mathematical modelling of the agr operon in Staphylococcus aureus Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/60?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Model of Trypanosoma brucei glycolysis as published in Achcar et al. (2012). Model of Trypanosoma brucei glycolysis as published in Achcar et al. (2012). Fiona Achcar FAIRDOMHub Models https://fairdomhub.org/models/62?version=1 SBML University of Glasgow Model of trypanosomal glycolysis extended with the pentose phosphate pathway (m5) - non-final. Model of trypanosomal glycolysis extended with the pentose phosphate pathway (m5) - non-final. Eduard Kerkhoven FAIRDOMHub Models https://fairdomhub.org/models/63?version=1 SBML University of Glasgow Chalmers University of Technology Model of trypanosomal glycolysis extended with the pentose phosphate pathway (m6) - non-final. Model of trypanosomal glycolysis extended with the pentose phosphate pathway (m6) - non-final. Eduard Kerkhoven FAIRDOMHub Models https://fairdomhub.org/models/64?version=1 SBML University of Glasgow Chalmers University of Technology Stressosome-dynamics Stressosome-dynamics Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/65?version=1 Matlab package University of Rostock pH-dependent steady states of ABE fermetation in C. acetobutylicum pH-dependent steady states of ABE fermetation in C. acetobutylicum Thomas Millat FAIRDOMHub Models https://fairdomhub.org/models/66?version=1 Matlab package University of Rostock Published kinetic model of glycolysis in L. lactis Published kinetic model of glycolysis in L. lactis Jennifer Levering FAIRDOMHub Models https://fairdomhub.org/models/69?version=1 SBML University of Heidelberg Published kinetic model of glycolysis in S. pyogenes Published kinetic model of glycolysis in S. pyogenes Jennifer Levering FAIRDOMHub Models https://fairdomhub.org/models/70?version=1 SBML University of Heidelberg Genome-scale model of Streptococcus pyogenes Genome-scale model of Streptococcus pyogenes Jennifer Levering FAIRDOMHub Models https://fairdomhub.org/models/71?version=1 SBML University of Heidelberg Script for the calculation of theoretical coil length Script for the calculation of theoretical coil length Sebastian Curth FAIRDOMHub Models https://fairdomhub.org/models/72?version=1 Matlab package Beuth University of Applied Sciences Berlin Detailed kinetic model of yeast glycolytic oscillation - I Detailed kinetic model of yeast glycolytic oscillation - I Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/74?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - II Detailed kinetic model of yeast glycolytic oscillation - II Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/75?version=3 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - III Detailed kinetic model of yeast glycolytic oscillation - III Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/76?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - IV Detailed kinetic model of yeast glycolytic oscillation - IV Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/77?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - V Detailed kinetic model of yeast glycolytic oscillation - V Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/78?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - VI Detailed kinetic model of yeast glycolytic oscillation - VI Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/79?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - VII Detailed kinetic model of yeast glycolytic oscillation - VII Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/80?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Sustained glycolytic oscillations in individual isolated yeast cells - IV Sustained glycolytic oscillations in individual isolated yeast cells - IV Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/81?version=6 Manchester Centre for Integrative Systems Biology, University of Manchester Sustained glycolytic oscillations in individual isolated yeast cells - III Sustained glycolytic oscillations in individual isolated yeast cells - III Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/82?version=3 Manchester Centre for Integrative Systems Biology, University of Manchester Sustained glycolytic oscillations in individual isolated yeast cells - II Sustained glycolytic oscillations in individual isolated yeast cells - II Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/83?version=5 Manchester Centre for Integrative Systems Biology, University of Manchester Sustained glycolytic oscillations in individual isolated yeast cells - I Sustained glycolytic oscillations in individual isolated yeast cells - I Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/84?version=3 Manchester Centre for Integrative Systems Biology, University of Manchester SBML model of yeast central carbon metabolism SBML model of yeast central carbon metabolism Maksim Zakhartsev FAIRDOMHub Models https://fairdomhub.org/models/85?version=1 SBML University of Stuttgart University of Hohenheim Norwegian University of Life Sciences Norwegian University of Science and Technology Monomer Stressosome Model Monomer Stressosome Model Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/88?version=1 Matlab package University of Rostock Draft model of Glycolysis in T. brucei incorporating transcription and translation of the enzymes Draft model of Glycolysis in T. brucei incorporating transcription and translation of the enzymes Fiona Achcar FAIRDOMHub Models https://fairdomhub.org/models/89?version=1 SBML University of Glasgow Kinetic Model of Lactococcus lactis PYK Kinetic Model of Lactococcus lactis PYK Nadine Veith FAIRDOMHub Models https://fairdomhub.org/models/90?version=1 SBML University of Heidelberg Compartimented ODE model of oxygen diffusion near E. coli cells Compartimented ODE model of oxygen diffusion near E. coli cells David Knies FAIRDOMHub Models https://fairdomhub.org/models/91?version=3 SBML University of Stuttgart PDE model of oxygen diffusion near E. coli cells PDE model of oxygen diffusion near E. coli cells David Knies FAIRDOMHub Models https://fairdomhub.org/models/92?version=2 Mathematica University of Stuttgart L lactis kinetic model L lactis kinetic model domenico bellomo FAIRDOMHub Models https://fairdomhub.org/models/96?version=1 Matlab package VU University Amsterdam Parameter estimation for a function describing the changing pH level during the pH-induced metabolic shift Parameter estimation for a function describing the changing pH level during the pH-induced metabolic shift Thomas Millat FAIRDOMHub Models https://fairdomhub.org/models/98?version=1 Matlab package University of Rostock Estimation of an acidogenic and solventogenic population from optical density data observed in 'forward'-shift experiments using continuous cultures of C. acetobutylicum Estimation of an acidogenic and solventogenic population from optical density data observed in 'forward'-shift experiments using continuous cultures of C. acetobutylicum Thomas Millat FAIRDOMHub Models https://fairdomhub.org/models/99?version=1 Matlab package University of Rostock Model of the pH-induced metabolic shift in phosphate-limited continuous cultures of C. acetobutylicum assuming a phenotypic switch Model of the pH-induced metabolic shift in phosphate-limited continuous cultures of C. acetobutylicum assuming a phenotypic switch Thomas Millat FAIRDOMHub Models https://fairdomhub.org/models/100?version=1 Matlab package University of Rostock LAB with ATP-driven glucose import of yeast LAB with ATP-driven glucose import of yeast Ettore Murabito FAIRDOMHub Models https://fairdomhub.org/models/101?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester TFInfer: a tool for probabilistic inference of transcription factor activities TFInfer: a tool for probabilistic inference of transcription factor activities Guido Sanguinetti FAIRDOMHub Models https://fairdomhub.org/models/102?version=1 University of Edinburgh Agent-based model of response of E.coli to different levels of oxygen supply (with FNR and ArcBA) Agent-based model of response of E.coli to different levels of oxygen supply (with FNR and ArcBA) Hao Bai FAIRDOMHub Models https://fairdomhub.org/models/105?version=1 University of Sheffield TFinfer2 TFinfer2 Botond Cseke FAIRDOMHub Models https://fairdomhub.org/models/106?version=1 Matlab package University of Edinburgh Models of glycolysis in T. brucei with different levels of permeability of the glycosomes, and with or without cytosolic activities of the glycolytic enzymes. Models of glycolysis in T. brucei with different levels of permeability of the glycosomes, and with or without cytosolic activities of the glycolytic enzymes. Fiona Achcar FAIRDOMHub Models https://fairdomhub.org/models/107?version=2 SBML University of Glasgow Final model of TryS Final model of TryS Jurgen Haanstra FAIRDOMHub Models https://fairdomhub.org/models/108?version=2 Copasi University of Groningen VU University Amsterdam PGK Kinetic Model PGK Kinetic Model Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/110?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Model of reconstituted gluconeogenesis system in S. solfataricus Model of reconstituted gluconeogenesis system in S. solfataricus Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/111?version=2 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University FBPAase Kinetic Model FBPAase Kinetic Model Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/112?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University GAPDH Kinetic Model GAPDH Kinetic Model Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/113?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University TPI Kinetic Model TPI Kinetic Model Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/114?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Kinetic Model of Temperature Degradation of Gluconeogenic Intermediates Kinetic Model of Temperature Degradation of Gluconeogenic Intermediates Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/115?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PYK structural models PYK structural models Nadine Veith FAIRDOMHub Models https://fairdomhub.org/models/116?version=1 University of Heidelberg Part 1: Comparative modeling of 3D structures of LDH enzymes Part 1: Comparative modeling of 3D structures of LDH enzymes Anna Feldman-Salit FAIRDOMHub Models https://fairdomhub.org/models/118?version=1 Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Heidelberg Part 3: Comparison of electrostatic potentials for FBP binding Part 3: Comparison of electrostatic potentials for FBP binding Anna Feldman-Salit FAIRDOMHub Models https://fairdomhub.org/models/119?version=1 Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Heidelberg Part 2: Computation of electrostatic potentials for 4 LDH enzymes Part 2: Computation of electrostatic potentials for 4 LDH enzymes Anna Feldman-Salit FAIRDOMHub Models https://fairdomhub.org/models/120?version=1 Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Heidelberg Part 4: Activation / Inhibition Effect on LDHs function in the presence of Phosphate ions Part 4: Activation / Inhibition Effect on LDHs function in the presence of Phosphate ions Anna Feldman-Salit FAIRDOMHub Models https://fairdomhub.org/models/121?version=1 Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Heidelberg Part 5: Algorithm to computationally estimate the effect of Pi for 4 LDH enzymes Part 5: Algorithm to computationally estimate the effect of Pi for 4 LDH enzymes Anna Feldman-Salit FAIRDOMHub Models https://fairdomhub.org/models/122?version=1 Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Heidelberg HK Kinetic model HK Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/124?version=1 Mathematica University of Stellenbosch Stellenbosch University PGI Kinetic model PGI Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/126?version=1 Mathematica University of Stellenbosch Stellenbosch University PFK Kinetic model PFK Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/127?version=1 Mathematica University of Stellenbosch Stellenbosch University ALD Kinetic model ALD Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/128?version=1 Mathematica University of Stellenbosch Stellenbosch University TPI Kinetic model TPI Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/129?version=1 Mathematica University of Stellenbosch Stellenbosch University G3PDH Kinetic model G3PDH Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/130?version=2 Mathematica University of Stellenbosch Stellenbosch University GAPDH Kinetic model GAPDH Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/131?version=2 Mathematica University of Stellenbosch Stellenbosch University PGK Kinetic model PGK Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/132?version=1 Mathematica University of Stellenbosch Stellenbosch University PGM Kinetic model PGM Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/133?version=1 Mathematica University of Stellenbosch Stellenbosch University PK Kinetic model PK Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/134?version=1 Mathematica University of Stellenbosch Stellenbosch University LDH Kinetic model LDH Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/135?version=1 Mathematica University of Stellenbosch Stellenbosch University ENO Kinetic model ENO Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/136?version=1 Mathematica University of Stellenbosch Stellenbosch University Kinetic model for incubation (penkler2) Kinetic model for incubation (penkler2) Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/138?version=7 SBML University of Stellenbosch Stellenbosch University GLCtr Kinetic model GLCtr Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/139?version=2 Mathematica University of Stellenbosch Stellenbosch University GLYtr Kinetic model GLYtr Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/140?version=1 Mathematica University of Stellenbosch Stellenbosch University PYRtr Kinetic model PYRtr Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/141?version=1 Mathematica University of Stellenbosch Stellenbosch University LACtr Kinetic model LACtr Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/142?version=1 Mathematica University of Stellenbosch Stellenbosch University ATPASE Kinetic model ATPASE Kinetic model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/143?version=1 Mathematica University of Stellenbosch Stellenbosch University Kinetic model for steady state (penkler1) Kinetic model for steady state (penkler1) Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/144?version=8 SBML University of Stellenbosch Stellenbosch University iNS142 RobOKoD Redesigned Butanol Producing. iNS142 RobOKoD Redesigned Butanol Producing. Natalie Stanford FAIRDOMHub Models https://fairdomhub.org/models/159?version=1 SBML University of Manchester - Department of Computer Science Manchester Centre for Integrative Systems Biology, University of Manchester E.coli Core Model with Beta Oxidation Cycle. E.coli Core Model with Beta Oxidation Cycle. Natalie Stanford FAIRDOMHub Models https://fairdomhub.org/models/160?version=1 SBML University of Manchester - Department of Computer Science Manchester Centre for Integrative Systems Biology, University of Manchester Kinetic model incorporating glucose transport inhibition (vanniekerk1) Kinetic model incorporating glucose transport inhibition (vanniekerk1) Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/175?version=1 SBML University of Stellenbosch Stellenbosch University GLCtr kinetic model incorporating inhibition GLCtr kinetic model incorporating inhibition Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/176?version=1 Mathematica University of Stellenbosch Stellenbosch University Validation of lactate flux inhibition by glucose transport inhibitor Validation of lactate flux inhibition by glucose transport inhibitor Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/177?version=2 Mathematica University of Stellenbosch Stellenbosch University Supply demand analysis on penkler1 model Supply demand analysis on penkler1 model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/179?version=1 Mathematica University of Stellenbosch Stellenbosch University Genome-scale metabolic model of Enterococcus faecalis V583 Genome-scale metabolic model of Enterococcus faecalis V583 Nadine Veith FAIRDOMHub Models https://fairdomhub.org/models/180?version=1 SBML University of Heidelberg JAK2/STAT5 model JAK2/STAT5 model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/185?version=1 SBML University of Stellenbosch Stellenbosch University ZucAt: multi-compartment metabolic model of growing Arabidopsis thaliana ZucAt: multi-compartment metabolic model of growing Arabidopsis thaliana Maksim Zakhartsev FAIRDOMHub Models https://fairdomhub.org/models/186?version=2 SBML University of Stuttgart University of Hohenheim Norwegian University of Life Sciences Norwegian University of Science and Technology NR model 1 NR model 1 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/187?version=1 SBML University of Stellenbosch Stellenbosch University NR model 2 NR model 2 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/188?version=1 SBML University of Stellenbosch Stellenbosch University NR model 3 NR model 3 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/189?version=1 SBML University of Stellenbosch Stellenbosch University NR model 4 NR model 4 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/190?version=1 SBML University of Stellenbosch Stellenbosch University NR model 5 NR model 5 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/191?version=1 SBML University of Stellenbosch Stellenbosch University NR model 6 NR model 6 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/192?version=1 SBML University of Stellenbosch Stellenbosch University BIOMD0000000005 from BioModels Database BIOMD0000000005 from BioModels Database Ron Henkel FAIRDOMHub Models https://fairdomhub.org/models/196?version=3 SBML Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Rostock Metabolic model of Sulfolobus solfataricus Metabolic model of Sulfolobus solfataricus Jacqueline Wolf FAIRDOMHub Models https://fairdomhub.org/models/225?version=1 SBML University of Braunschweig Hepatic galactose model Hepatic galactose model Matthias König FAIRDOMHub Models https://fairdomhub.org/models/226?version=1 SBML Charité University Medicine Berlin Humboldt-Universität zu Berlin Humboldt University Berlin Metabolic model of Sulfolobus solfataricus Metabolic model of Sulfolobus solfataricus Helge Stark FAIRDOMHub Models https://fairdomhub.org/models/231?version=2 SBML University of Braunschweig BaF3 model BaF3 model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/241?version=1 SBML University of Stellenbosch Stellenbosch University mCFU-E model mCFU-E model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/242?version=1 SBML University of Stellenbosch Stellenbosch University Arabidopsis clock model P2011.1.2 Arabidopsis clock model P2011.1.2 Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/243?version=1 SBML University of Edinburgh Chew_et_al_2014_Framework_Model version 1, Matlab and Simile Chew_et_al_2014_Framework_Model version 1, Matlab and Simile Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/247?version=1 Matlab package University of Edinburgh Framework Model v2 Framework Model v2 Daniel Seaton FAIRDOMHub Models https://fairdomhub.org/models/248?version=2 Matlab package University of Edinburgh Hartmut Bossel's Miniworld Hartmut Bossel's Miniworld Robert Muetzelfeldt FAIRDOMHub Models https://fairdomhub.org/models/249?version=1 University of Edinburgh Genome Scale Metabolic model of M. hyopneumoniae Genome Scale Metabolic model of M. hyopneumoniae Niels Zondervan FAIRDOMHub Models https://fairdomhub.org/models/267?version=1 SBML Wageningen University & Research Dynamic model of glycolysis, pyruvate metabolism and NoxE in M. pneumonaie with innitial parameter values and annotation Dynamic model of glycolysis, pyruvate metabolism and NoxE in M. pneumonaie with innitial parameter values and annotation Niels Zondervan FAIRDOMHub Models https://fairdomhub.org/models/269?version=3 SBML Wageningen University & Research Kinetic model of antibiotic-mediated inhibition of ribosomes Kinetic model of antibiotic-mediated inhibition of ribosomes Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/279?version=1 SBML University of Stellenbosch Stellenbosch University PGK yeast with/without recycling PGK yeast with/without recycling Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/280?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PGK yeast Fig1a PGK yeast Fig1a Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/281?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University BPG stability notebook BPG stability notebook Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/282?version=2 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PGK 70C SBML PGK 70C SBML Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/284?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PGK-GAPDH models yeast and Sulfolobus Fig. 4 PGK-GAPDH models yeast and Sulfolobus Fig. 4 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/285?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PGK-GAPDH model yeast kouril7 PGK-GAPDH model yeast kouril7 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/286?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PGK-GAPDH model Sulfolobus kouril8 PGK-GAPDH model Sulfolobus kouril8 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/287?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Translational coincidence modelling - python scripts Translational coincidence modelling - python scripts Daniel Seaton FAIRDOMHub Models https://fairdomhub.org/models/298?version=1 University of Edinburgh Estimation of translation and turnover - python scripts Estimation of translation and turnover - python scripts Daniel Seaton FAIRDOMHub Models https://fairdomhub.org/models/308?version=3 University of Edinburgh Model I - Mathematical model of the growth dynamics of P. aeruginosa in the presence of meropenem Model I - Mathematical model of the growth dynamics of P. aeruginosa in the presence of meropenem Chloe Spalding FAIRDOMHub Models https://fairdomhub.org/models/310?version=1 University of Birmingham P2011.1.2_directupload P2011.1.2_directupload Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/314?version=1 SBML University of Edinburgh iKS1317.xml iKS1317.xml Snorre Sulheim FAIRDOMHub Models https://fairdomhub.org/models/319?version=1 SBML SINTEF Morpheus: open source modelling and simulation framework for multicellular systems Morpheus: open source modelling and simulation framework for multicellular systems Lutz Brusch FAIRDOMHub Models https://fairdomhub.org/models/320?version=1 SBML Technische Universität Dresden Morpheus model of spatio-temporal Smo regulation in response to Hh signaling Morpheus model of spatio-temporal Smo regulation in response to Hh signaling Lutz Brusch FAIRDOMHub Models https://fairdomhub.org/models/321?version=1 Technische Universität Dresden Spatio-temporal dynamics of Rab5 domains on the membrane of early endosomes Spatio-temporal dynamics of Rab5 domains on the membrane of early endosomes Lutz Brusch FAIRDOMHub Models https://fairdomhub.org/models/322?version=1 SBML Technische Universität Dresden gustavsson5 model gustavsson5 model Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/324?version=2 SBML University of Stellenbosch Stellenbosch University gustavsson1-4 models gustavsson1-4 models Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/325?version=1 SBML University of Stellenbosch Stellenbosch University Frequency doubling in the cyanobacterial circadian clock Frequency doubling in the cyanobacterial circadian clock Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/326?version=2 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University 3PG - PLM_12, version 1, SUBMITTED 3PG - PLM_12, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/361?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 evapw submodel - PLM_33, version 1, SUBMITTED AFRC Wheat 2 evapw submodel - PLM_33, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/362?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 jdaydif submodel - PLM_34, version 1, SUBMITTED AFRC Wheat 2 jdaydif submodel - PLM_34, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/363?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 julday submodel - PLM_35, version 1, SUBMITTED AFRC Wheat 2 julday submodel - PLM_35, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/364?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 ldim submodel - PLM_36, version 1, SUBMITTED AFRC Wheat 2 ldim submodel - PLM_36, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/365?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 photpd submodel - PLM_37, version 1, SUBMITTED AFRC Wheat 2 photpd submodel - PLM_37, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/366?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 tdays submodel - PLM_38, version 1, SUBMITTED AFRC Wheat 2 tdays submodel - PLM_38, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/367?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 vappres submodel - PLM_39, version 1, SUBMITTED AFRC Wheat 2 vappres submodel - PLM_39, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/368?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 vernal submodel - PLM_40, version 1, SUBMITTED AFRC Wheat 2 vernal submodel - PLM_40, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/369?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 weathr submodel - PLM_41, version 1, SUBMITTED AFRC Wheat 2 weathr submodel - PLM_41, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/370?version=1 Simile XML v3 University of Edinburgh AFRC Wheat2 dev submodel - PLM_32, version 1, SUBMITTED AFRC Wheat2 dev submodel - PLM_32, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/371?version=1 Simile XML v3 University of Edinburgh Arabidopsis - starch and the circadian clock, Model 1 (Seaton et al., 2013) - PLM_77, version 1, SUBMITTED Arabidopsis - starch and the circadian clock, Model 1 (Seaton et al., 2013) - PLM_77, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/373?version=1 SBML University of Edinburgh Arabidopsis - starch and the circadian clock, Model 1 (Seaton et al., 2013) - PLM_77, version 1, SIMPLIFIED Arabidopsis - starch and the circadian clock, Model 1 (Seaton et al., 2013) - PLM_77, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/374?version=1 SBML University of Edinburgh Arabidopsis - starch and the circadian clock, Model 2 (Seaton et al., 2013) - PLM_78, version 1, SUBMITTED Arabidopsis - starch and the circadian clock, Model 2 (Seaton et al., 2013) - PLM_78, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/375?version=1 SBML University of Edinburgh Arabidopsis - starch and the circadian clock, Model 2 (Seaton et al., 2013) - PLM_78, version 1, SIMPLIFIED Arabidopsis - starch and the circadian clock, Model 2 (Seaton et al., 2013) - PLM_78, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/376?version=1 SBML University of Edinburgh Arabidopsis - starch and the circadian clock, Model 3 (Seaton et al., 2013) - PLM_79, version 1, SUBMITTED Arabidopsis - starch and the circadian clock, Model 3 (Seaton et al., 2013) - PLM_79, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/377?version=1 SBML University of Edinburgh Arabidopsis - starch and the circadian clock, Model 3 (Seaton et al., 2013) - PLM_79, version 1, SIMPLIFIED Arabidopsis - starch and the circadian clock, Model 3 (Seaton et al., 2013) - PLM_79, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/378?version=1 SBML University of Edinburgh Arabidopsis clock model P2011, graphical diagram - PLM_1045, version 1, SUBMITTED Arabidopsis clock model P2011, graphical diagram - PLM_1045, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/379?version=1 SBGN-ML PD University of Edinburgh Arabidopsis clock model P2011.3.1 - PLM_1041, version 1, SUBMITTED Arabidopsis clock model P2011.3.1 - PLM_1041, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/380?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.3.1 - PLM_1041, version 1, SIMPLIFIED Arabidopsis clock model P2011.3.1 - PLM_1041, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/381?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.4.1 - PLM_1042, version 1, SUBMITTED Arabidopsis clock model P2011.4.1 - PLM_1042, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/382?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.4.1 - PLM_1042, version 1, SIMPLIFIED Arabidopsis clock model P2011.4.1 - PLM_1042, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/383?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.5.1 - PLM_1043, version 1, SUBMITTED Arabidopsis clock model P2011.5.1 - PLM_1043, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/384?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.5.1 - PLM_1043, version 1, SIMPLIFIED Arabidopsis clock model P2011.5.1 - PLM_1043, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/385?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.6.1 - PLM_1044, version 1, SUBMITTED Arabidopsis clock model P2011.6.1 - PLM_1044, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/386?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.6.1 - PLM_1044, version 1, SIMPLIFIED Arabidopsis clock model P2011.6.1 - PLM_1044, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/387?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.1.2 - PLM_71, version 1, SUBMITTED Arabidopsis clock model P2011.1.2 - PLM_71, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/388?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.1.2 - PLM_71, version 1, SIMPLIFIED Arabidopsis clock model P2011.1.2 - PLM_71, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/389?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.2.1 - PLM_71, version 2, SUBMITTED Arabidopsis clock model P2011.2.1 - PLM_71, version 2, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/390?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.2.1 - PLM_71, version 2, SIMPLIFIED Arabidopsis clock model P2011.2.1 - PLM_71, version 2, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/391?version=1 SBML University of Edinburgh Arabidopsis leaf carbohydrate model (Rasse and Tocquin) - PLM_2, version 1, SUBMITTED Arabidopsis leaf carbohydrate model (Rasse and Tocquin) - PLM_2, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/392?version=1 Simile XML v3 University of Edinburgh arabidopsis_clock_biopepa - PLM_47, version 1, SUBMITTED arabidopsis_clock_biopepa - PLM_47, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/415?version=1 SBML University of Edinburgh arabidopsis_clock_biopepa - PLM_47, version 1, SIMPLIFIED arabidopsis_clock_biopepa - PLM_47, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/416?version=1 SBML University of Edinburgh Arabidopsis_clock_extend - PLM_6, version 1, SUBMITTED Arabidopsis_clock_extend - PLM_6, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/417?version=1 SBML University of Edinburgh Arabidopsis_clock_extend - PLM_6, version 1, SIMPLIFIED Arabidopsis_clock_extend - PLM_6, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/418?version=1 SBML University of Edinburgh Arabidopsis_clock_extend - PLM_6, version 2, SUBMITTED Arabidopsis_clock_extend - PLM_6, version 2, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/419?version=1 SBML University of Edinburgh Arabidopsis_clock_extend - PLM_6, version 2, SIMPLIFIED Arabidopsis_clock_extend - PLM_6, version 2, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/420?version=1 SBML University of Edinburgh Arabidopsis_clock_extend - PLM_6, version 3, SUBMITTED Arabidopsis_clock_extend - PLM_6, version 3, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/421?version=1 SBML University of Edinburgh Arabidopsis_clock_extend - PLM_6, version 3, SIMPLIFIED Arabidopsis_clock_extend - PLM_6, version 3, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/422?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 1, SUBMITTED Arabidopsis_clock_P2011 - PLM_64, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/423?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 1, SIMPLIFIED Arabidopsis_clock_P2011 - PLM_64, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/424?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 2, SUBMITTED Arabidopsis_clock_P2011 - PLM_64, version 2, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/425?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 2, SIMPLIFIED Arabidopsis_clock_P2011 - PLM_64, version 2, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/426?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 3, SUBMITTED Arabidopsis_clock_P2011 - PLM_64, version 3, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/427?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 3, SIMPLIFIED Arabidopsis_clock_P2011 - PLM_64, version 3, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/428?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 4, SUBMITTED Arabidopsis_clock_P2011 - PLM_64, version 4, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/429?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 4, SIMPLIFIED Arabidopsis_clock_P2011 - PLM_64, version 4, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/430?version=1 SBML University of Edinburgh Arabidopsis_clock_P2012 - PLM_70, version 1, SUBMITTED Arabidopsis_clock_P2012 - PLM_70, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/431?version=1 SBML University of Edinburgh Arabidopsis_clock_P2012 - PLM_70, version 1, SIMPLIFIED Arabidopsis_clock_P2012 - PLM_70, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/432?version=1 SBML University of Edinburgh Arabidopsis_clock_P2012 - PLM_70, version 2, SUBMITTED Arabidopsis_clock_P2012 - PLM_70, version 2, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/433?version=1 SBML University of Edinburgh Arabidopsis_clock_P2012 - PLM_70, version 2, SIMPLIFIED Arabidopsis_clock_P2012 - PLM_70, version 2, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/434?version=1 SBML University of Edinburgh AuxSim full - PLM_30, version 1, SUBMITTED AuxSim full - PLM_30, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/450?version=1 Simile XML v3 University of Edinburgh C3 photosynthesis (Farquhar, von Caemmerer, Berry) model - PLM_1, version 1, SUBMITTED C3 photosynthesis (Farquhar, von Caemmerer, Berry) model - PLM_1, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/451?version=1 Simile XML v3 University of Edinburgh Central plant metabolism - PLM_61, version 1, SUBMITTED Central plant metabolism - PLM_61, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/452?version=1 SBGN-ML PD University of Edinburgh CENTURY_Rowe_daily - PLM_22, version 1, SUBMITTED CENTURY_Rowe_daily - PLM_22, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/453?version=1 Simile XML v3 University of Edinburgh Chew_et_al_2012_Photothermal_Model - PLM_73, version 1, SUBMITTED Chew_et_al_2012_Photothermal_Model - PLM_73, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/454?version=1 Simile XML v3 University of Edinburgh Chew_et_al_2014_Framework_Model - PLM_76, version 1, SUBMITTED Chew_et_al_2014_Framework_Model - PLM_76, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/455?version=1 Simile XML v3 University of Edinburgh DALEC - PLM_23, version 1, SUBMITTED DALEC - PLM_23, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/456?version=1 Simile XML v3 University of Edinburgh DomijanTS_AtClock2011 - PLM_50, version 1, SUBMITTED DomijanTS_AtClock2011 - PLM_50, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/457?version=1 SBML University of Edinburgh DomijanTS_AtClock2011 - PLM_50, version 1, SIMPLIFIED DomijanTS_AtClock2011 - PLM_50, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/458?version=1 SBML University of Edinburgh DomijanTS_AtClock2011 - PLM_50, version 2, SUBMITTED DomijanTS_AtClock2011 - PLM_50, version 2, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/459?version=1 SBML University of Edinburgh DomijanTS_AtClock2011 - PLM_50, version 2, SIMPLIFIED DomijanTS_AtClock2011 - PLM_50, version 2, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/460?version=1 SBML University of Edinburgh F2014.1 - PLM_1030, version 1, SUBMITTED F2014.1 - PLM_1030, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/465?version=1 SBML University of Edinburgh Glycolysis SBGN - PLM_60, version 1, SUBMITTED Glycolysis SBGN - PLM_60, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/467?version=1 SBGN-ML PD University of Edinburgh Insulin-like growth factor signaling - PLM_62, version 1, SUBMITTED Insulin-like growth factor signaling - PLM_62, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/468?version=1 SBGN-ML PD University of Edinburgh LINTUL - PLM_4, version 1, SUBMITTED LINTUL - PLM_4, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/469?version=1 Simile XML v3 University of Edinburgh LINTUL_V2 - PLM_42, version 1, SUBMITTED LINTUL_V2 - PLM_42, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/470?version=1 Simile XML v3 University of Edinburgh Locke2005_CircadianClock_tanh - PLM_8, version 1, SUBMITTED Locke2005_CircadianClock_tanh - PLM_8, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/471?version=1 SBML University of Edinburgh Locke2005_CircadianClock_tanh - PLM_8, version 1, SIMPLIFIED Locke2005_CircadianClock_tanh - PLM_8, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/472?version=1 SBML University of Edinburgh Locke2006_CircadianClock_tanh - PLM_10, version 1, SUBMITTED Locke2006_CircadianClock_tanh - PLM_10, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/473?version=1 SBML University of Edinburgh Locke2006_CircadianClock_tanh - PLM_10, version 1, SIMPLIFIED Locke2006_CircadianClock_tanh - PLM_10, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/474?version=1 SBML University of Edinburgh McMurtrie vegetation model - PLM_11, version 1, SUBMITTED McMurtrie vegetation model - PLM_11, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/477?version=1 Simile XML v3 University of Edinburgh McMurtrie vegetation model - PLM_11, version 2, SUBMITTED McMurtrie vegetation model - PLM_11, version 2, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/478?version=1 Simile XML v3 University of Edinburgh Miscanmod - PLM_3, version 1, SUBMITTED Miscanmod - PLM_3, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/479?version=1 Simile XML v3 University of Edinburgh Modelling circadian regulation of flowering time and hypocotyl elongation, Seaton et al., 2015 - PLM_1010, version 1, SUBMITTED Modelling circadian regulation of flowering time and hypocotyl elongation, Seaton et al., 2015 - PLM_1010, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/480?version=1 SBML University of Edinburgh Modelling circadian regulation of flowering time and hypocotyl elongation, Seaton et al., 2015 - PLM_1010, version 1, SIMPLIFIED Modelling circadian regulation of flowering time and hypocotyl elongation, Seaton et al., 2015 - PLM_1010, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/481?version=1 SBML University of Edinburgh Modified Locke Arabadopsis 3 loop Circadian Clock - PLM_66, version 1, SUBMITTED Modified Locke Arabadopsis 3 loop Circadian Clock - PLM_66, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/482?version=1 SBML University of Edinburgh Modified Locke Arabadopsis 3 loop Circadian Clock - PLM_66, version 1, SIMPLIFIED Modified Locke Arabadopsis 3 loop Circadian Clock - PLM_66, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/483?version=1 SBML University of Edinburgh Neuronal muscle signalling - PLM_63, version 1, SUBMITTED Neuronal muscle signalling - PLM_63, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/484?version=1 SBGN-ML PD University of Edinburgh Neurospora Circadian Clock 3-variable model - PLM_51, version 1, SUBMITTED Neurospora Circadian Clock 3-variable model - PLM_51, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/485?version=1 SBML University of Edinburgh Neurospora Circadian Clock 3-variable model - PLM_51, version 1, SIMPLIFIED Neurospora Circadian Clock 3-variable model - PLM_51, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/486?version=1 SBML University of Edinburgh Neurospora Circadian Clock 3-variable model - sinusoidal light oscillations - PLM_52, version 1, SUBMITTED Neurospora Circadian Clock 3-variable model - sinusoidal light oscillations - PLM_52, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/487?version=1 SBML University of Edinburgh Neurospora Circadian Clock 3-variable model - sinusoidal light oscillations - PLM_52, version 1, SIMPLIFIED Neurospora Circadian Clock 3-variable model - sinusoidal light oscillations - PLM_52, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/488?version=1 SBML University of Edinburgh Part_of_Christophe_et_al_2008_Functional_Structural_Plant_Model - PLM_75, version 1, SUBMITTED Part_of_Christophe_et_al_2008_Functional_Structural_Plant_Model - PLM_75, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/495?version=1 Simile XML v3 University of Edinburgh Salazar2009_FloweringPhotoperiod - PLM_9, version 1, SUBMITTED Salazar2009_FloweringPhotoperiod - PLM_9, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/499?version=1 SBML University of Edinburgh Salazar2009_FloweringPhotoperiod - PLM_9, version 1, SIMPLIFIED Salazar2009_FloweringPhotoperiod - PLM_9, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/500?version=1 SBML University of Edinburgh Salazar2009_FloweringPhotoperiod - PLM_9, version 2, SUBMITTED Salazar2009_FloweringPhotoperiod - PLM_9, version 2, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/501?version=1 SBML University of Edinburgh Salazar2009_FloweringPhotoperiod - PLM_9, version 2, SIMPLIFIED Salazar2009_FloweringPhotoperiod - PLM_9, version 2, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/502?version=1 SBML University of Edinburgh Salazar_et_al_2009_Photoperiodism_Model - PLM_74, version 1, SUBMITTED Salazar_et_al_2009_Photoperiodism_Model - PLM_74, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/503?version=1 Simile XML v3 University of Edinburgh SUCROS1 - PLM_24, version 1, SUBMITTED SUCROS1 - PLM_24, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/506?version=1 Simile XML v3 University of Edinburgh T2011 Ostreococcus clock, acc immediate - PLM_83, version 1, SUBMITTED T2011 Ostreococcus clock, acc immediate - PLM_83, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/507?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, acc immediate - PLM_83, version 1, SIMPLIFIED T2011 Ostreococcus clock, acc immediate - PLM_83, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/508?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, acc on - PLM_84, version 1, SUBMITTED T2011 Ostreococcus clock, acc on - PLM_84, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/509?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, acc on - PLM_84, version 1, SIMPLIFIED T2011 Ostreococcus clock, acc on - PLM_84, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/510?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 degr D - PLM_86, version 1, SUBMITTED T2011 Ostreococcus clock, CCA1 degr D - PLM_86, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/511?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 degr D - PLM_86, version 1, SIMPLIFIED T2011 Ostreococcus clock, CCA1 degr D - PLM_86, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/512?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 degr L - PLM_85, version 1, SUBMITTED T2011 Ostreococcus clock, CCA1 degr L - PLM_85, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/513?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 degr L - PLM_85, version 1, SIMPLIFIED T2011 Ostreococcus clock, CCA1 degr L - PLM_85, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/514?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 prod D - PLM_88, version 1, SUBMITTED T2011 Ostreococcus clock, CCA1 prod D - PLM_88, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/515?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 prod D - PLM_88, version 1, SIMPLIFIED T2011 Ostreococcus clock, CCA1 prod D - PLM_88, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/516?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 prod L - PLM_87, version 1, SUBMITTED T2011 Ostreococcus clock, CCA1 prod L - PLM_87, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/517?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 prod L - PLM_87, version 1, SIMPLIFIED T2011 Ostreococcus clock, CCA1 prod L - PLM_87, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/518?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 act D - PLM_92, version 1, SUBMITTED T2011 Ostreococcus clock, TOC1 act D - PLM_92, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/519?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 act D - PLM_92, version 1, SIMPLIFIED T2011 Ostreococcus clock, TOC1 act D - PLM_92, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/520?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 act L - PLM_91, version 1, SUBMITTED T2011 Ostreococcus clock, TOC1 act L - PLM_91, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/521?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 act L - PLM_91, version 1, SIMPLIFIED T2011 Ostreococcus clock, TOC1 act L - PLM_91, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/522?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr D - PLM_90, version 1, SUBMITTED T2011 Ostreococcus clock, TOC1 degr D - PLM_90, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/523?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr D - PLM_90, version 1, SIMPLIFIED T2011 Ostreococcus clock, TOC1 degr D - PLM_90, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/524?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 1, SUBMITTED T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/525?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 1, SIMPLIFIED T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/526?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 2, SUBMITTED T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 2, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/527?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 2, SIMPLIFIED T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 2, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/528?version=1 SBML University of Edinburgh TRIFFID - PLM_5, version 1, SUBMITTED TRIFFID - PLM_5, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/538?version=1 Simile XML v3 University of Edinburgh Troein Ostreococcus clock 1-loop - PLM_7, version 1, SUBMITTED Troein Ostreococcus clock 1-loop - PLM_7, version 1, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/539?version=1 SBML University of Edinburgh Troein Ostreococcus clock 1-loop - PLM_7, version 1, SIMPLIFIED Troein Ostreococcus clock 1-loop - PLM_7, version 1, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/540?version=1 SBML University of Edinburgh Troein Ostreococcus clock 1-loop - PLM_7, version 2, SUBMITTED Troein Ostreococcus clock 1-loop - PLM_7, version 2, SUBMITTED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/541?version=1 SBML University of Edinburgh Troein Ostreococcus clock 1-loop - PLM_7, version 2, SIMPLIFIED Troein Ostreococcus clock 1-loop - PLM_7, version 2, SIMPLIFIED BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/542?version=1 SBML University of Edinburgh Core model of glycolysis, pyruvate metabolism ATPase + NoxE reaction Core model of glycolysis, pyruvate metabolism ATPase + NoxE reaction Niels Zondervan FAIRDOMHub Models https://fairdomhub.org/models/548?version=1 Copasi Wageningen University & Research Yeast_deFBA Model Yeast_deFBA Model Henning Lindhorst FAIRDOMHub Models https://fairdomhub.org/models/555?version=1 SBML Otto-von-Guericke University Magdeburg Enzymatic Growth Model Enzymatic Growth Model Henning Lindhorst FAIRDOMHub Models https://fairdomhub.org/models/556?version=1 SBML Otto-von-Guericke University Magdeburg Carbon Core deFBA Model Carbon Core deFBA Model Henning Lindhorst FAIRDOMHub Models https://fairdomhub.org/models/557?version=1 SBML Otto-von-Guericke University Magdeburg Resource Allocation Model Resource Allocation Model Henning Lindhorst FAIRDOMHub Models https://fairdomhub.org/models/558?version=1 SBML Otto-von-Guericke University Magdeburg PGK 70C PGK 70C Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/559?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University XDH model XDH model Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/565?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University XLA model XLA model Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/566?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University XAD model XAD model Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/567?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University KDXD model KDXD model Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/568?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University KGSADH model KGSADH model Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/570?version=2 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Detailed model of ROS management Detailed model of ROS management Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/571?version=1 Copasi University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) One-Pot-Cascade 13 One-Pot-Cascade 13 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/592?version=2 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University One-Pot-Cascade 10 One-Pot-Cascade 10 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/594?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis XDH Progress curve analysis XDH Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/599?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis XLA Progress curve analysis XLA Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/600?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis XAD Progress curve analysis XAD Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/601?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis KDXD Progress curve analysis KDXD Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/602?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis KGSADH Progress curve analysis KGSADH Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/603?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis combined Progress curve analysis combined Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/604?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University One pot cascade 12 One pot cascade 12 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/605?version=4 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University One pot cascade 16 One pot cascade 16 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/607?version=2 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis (shen1) Progress curve analysis (shen1) Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/609?version=2 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Cascade analysis (shen2) Cascade analysis (shen2) Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/610?version=2 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University CFE Mn NADrec CFE Mn NADrec Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/611?version=2 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University CFE no Mn, with NADrec CFE no Mn, with NADrec Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/613?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University CFE Mn noNADrec CFE Mn noNADrec Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/614?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University CFE analysis (shen2) CFE analysis (shen2) Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/615?version=2 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University yeast-GEM 8.3.3 yeast-GEM 8.3.3 Eduard Kerkhoven FAIRDOMHub Models https://fairdomhub.org/models/616?version=1 SBML University of Glasgow Chalmers University of Technology Breast cancer development model Breast cancer development model Hannah O'Keefe FAIRDOMHub Models https://fairdomhub.org/models/627?version=8 University of Newcastle-upon-Tyne University of Newcastle Dermal cellular senescence model Dermal cellular senescence model Hannah O'Keefe FAIRDOMHub Models https://fairdomhub.org/models/628?version=1 University of Newcastle-upon-Tyne University of Newcastle Standard model of acute inflammation Abudulikemu et al 2020 Standard model of acute inflammation Abudulikemu et al 2020 Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/638?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam Innate inflammation homo sapiens Innate inflammation homo sapiens Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/639?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam Innate Inflammation; model 2018 Innate Inflammation; model 2018 Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/640?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam Calibrated comprehensive model of ROS management Calibrated comprehensive model of ROS management Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/643?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam CFE steady state analysis (shen3) CFE steady state analysis (shen3) Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/644?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Copasi file chronic inflammation Abulikemu et al 2020 (altered units TNF and MMP8) homo sapiens Copasi file chronic inflammation Abulikemu et al 2020 (altered units TNF and MMP8) homo sapiens Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/645?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam Copasi file acute inflammation Abulikemu et al 2020 (altered units TNF and MMP8) homo sapiens Copasi file acute inflammation Abulikemu et al 2020 (altered units TNF and MMP8) homo sapiens Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/646?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam P2011.3.1 Copasi P2011.3.1 Copasi Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/654?version=1 Copasi University of Edinburgh P2011.6.1 Copasi P2011.6.1 Copasi Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/655?version=1 Copasi University of Edinburgh F2014.1.2 with stepfunction F2014.1.2 with stepfunction Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/659?version=1 SBML University of Edinburgh F2014.1.2 Copasi F2014.1.2 Copasi Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/660?version=1 Copasi University of Edinburgh P2011.1.2 SBML P2011.1.2 SBML Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/661?version=2 SBML University of Edinburgh Heinrich Heine University of Düsseldorf F2014 all parameters in SBML F2014 all parameters in SBML Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/662?version=1 SBML University of Edinburgh P2011.1.2 Antimony P2011.1.2 Antimony Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/663?version=2 University of Edinburgh Heinrich Heine University of Düsseldorf Salb-GEM.xml Salb-GEM.xml Cheewin Kittikunapong FAIRDOMHub Models https://fairdomhub.org/models/688?version=1 SBML Chalmers University of Technology Comprehensive model for COVID-19 caused by SARS-CoV-2 Comprehensive model for COVID-19 caused by SARS-CoV-2 Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/693?version=1 Copasi University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) Renz2020 - GEM of Human alveolar macrophage with SARS-CoV-2 Renz2020 - GEM of Human alveolar macrophage with SARS-CoV-2 Martin Golebiewski FAIRDOMHub Models https://fairdomhub.org/models/699?version=1 SBML Heidelberg Institute for Theoretical Studies (HITS gGmbH) COVIDPathways - WikiPathways COVIDPathways - WikiPathways Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/700?version=1 Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) PAMP signaling (COVID-19 Disease Map) PAMP signaling (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/701?version=4 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Orf10 Cul2 pathway (COVID-19 Disease Map) Orf10 Cul2 pathway (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/702?version=4 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Virus replication cycle (COVID-19 Disease Map) Virus replication cycle (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/703?version=9 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) RTC and transcription (COVID-19 Disease Map) RTC and transcription (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/704?version=3 SBGN-ML PD Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Nsp4 and Nsp6 interactions (COVID-19 Disease Maps) Nsp4 and Nsp6 interactions (COVID-19 Disease Maps) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/708?version=5 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Renin-angiotensin pathway (COVID-19 Disease Map) Renin-angiotensin pathway (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/709?version=5 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) The impact of Nsp14 on metabolism (COVID-19 Disease Map) The impact of Nsp14 on metabolism (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/710?version=3 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) ER stress (COVID-19 Disease Map) ER stress (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/711?version=3 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Apoptosis pathway (COVID-19 Disease Map) Apoptosis pathway (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/712?version=4 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Interferon 1 pathway (COVID-19 Disease Map) Interferon 1 pathway (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/713?version=5 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) SBML Qual models of selected COVID-19 Disease Map diagrams SBML Qual models of selected COVID-19 Disease Map diagrams Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/714?version=1 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) HMOX1 pathway (COVID-19 Disease Map) HMOX1 pathway (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/718?version=5 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Electron Transport Chain (COVID-19 Disease Map) Electron Transport Chain (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/719?version=3 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Orf3a interactions (COVID-19 Disease Map) Orf3a interactions (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/720?version=5 Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) E protein interactions (COVID-19 Disease Map) E protein interactions (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/721?version=3 Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Reactome pathways for SARS-CoV infections Reactome pathways for SARS-CoV infections Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/722?version=2 SBGN-ML PD Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Genome-scale metabolic model (GEM) for reconstraction of flavonoids biosynthetic pathways Genome-scale metabolic model (GEM) for reconstraction of flavonoids biosynthetic pathways David San León Granado FAIRDOMHub Models https://fairdomhub.org/models/725?version=7 SBML CSIC U2019.1 U2019.1 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/726?version=4 SBML University of Edinburgh Heinrich Heine University of Düsseldorf U2019.2 U2019.2 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/727?version=3 SBML University of Edinburgh Heinrich Heine University of Düsseldorf U2019.3 U2019.3 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/728?version=3 SBML University of Edinburgh Heinrich Heine University of Düsseldorf U2020.1 U2020.1 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/729?version=3 SBML University of Edinburgh Heinrich Heine University of Düsseldorf U2020.2 U2020.2 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/730?version=3 SBML University of Edinburgh Heinrich Heine University of Düsseldorf U2020.3 U2020.3 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/731?version=2 SBML University of Edinburgh Heinrich Heine University of Düsseldorf Calibrated comprehensive model of ROS management (no attachment, for the right version see http://doi.org/10.15490/FAIRDOMHUB.1.MODEL.734.1) Calibrated comprehensive model of ROS management (no attachment, for the right version see http://doi.org/10.15490/FAIRDOMHUB.1.MODEL.734.1) Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/732?version=1 Copasi University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) Calibrated comprehensive model of ROS management Improved Calibrated comprehensive model of ROS management Improved Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/734?version=1 Copasi University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) JNK pathway (COVID-19 Disease Map) JNK pathway (COVID-19 Disease Map) Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/735?version=3 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Nsp9 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for Systems Biomedicine (LCSB) Main Figure 3 Main Figure 3 Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/740?version=1 University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) Main Figure 4 Models_Copasi Main Figure 4 Models_Copasi Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/742?version=1 University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) Figure-3_Detailed Model Diagram Figure-3_Detailed Model Diagram Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/743?version=1 SBML University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) framework model v1_5 framework model v1_5 Hannah Kinmonth-Schultz FAIRDOMHub Models 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