FAIRDOMHub The FAIRDOMHub is built upon the SEEK software suite, which is an open source web platform for sharing scientific research assets, processes and outcomes. community@fair-dom.org 384 Continuously, state of 2022-02-22 12:57:43.328819 2022-02-22 12:57:43.328819 community@fair-dom.org https://fairdomhub.org Basic kinetic model of Escherichia coli's electron transport chain (ETC) Basic kinetic model of Escherichia coli's electron transport chain (ETC) 2009-10-26 2011-03-04 2009-10-26 Sebastian Henkel FAIRDOMHub Models https://fairdomhub.org/models/16?version=1 SBML University of Stuttgart Development of agent-based models describing the response of Escherichia coli to changes in oxygen availability Development of agent-based models describing the response of Escherichia coli to changes in oxygen availability 2009-10-26 2009-10-26 2009-10-26 Afsaneh Maleki-Dizaji FAIRDOMHub Models https://fairdomhub.org/models/18?version=1 University of Sheffield sigB-response_starvation_shakeflask sigB-response_starvation_shakeflask 2009-10-26 2009-10-28 2009-10-26 Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/20?version=1 Matlab package University of Rostock Model for ED pathway in Sulfolobus solfataricus Model for ED pathway in Sulfolobus solfataricus 2009-10-26 2009-10-26 2009-10-26 Peter Ruoff FAIRDOMHub Models https://fairdomhub.org/models/21?version=1 University of Stavanger A Mathematical Model of Metabolism and Regulation Provides a Systems-Level View of the Oxygen Response of Escherichia coli A Mathematical Model of Metabolism and Regulation Provides a Systems-Level View of the Oxygen Response of Escherichia coli 2009-10-26 2014-03-18 2009-10-26 Michael Ederer FAIRDOMHub Models https://fairdomhub.org/models/23?version=5 Mathematica University of Stuttgart BSA115-sigB-adaptation BSA115-sigB-adaptation 2009-11-16 2012-05-02 2009-11-16 Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/24?version=1 Matlab package University of Rostock COPASI model of L. lactis glycolysis COPASI model of L. lactis glycolysis 2010-05-27 2018-11-27 2010-05-27 Mark Musters FAIRDOMHub Models https://fairdomhub.org/models/25?version=2 Copasi Wageningen University & Research SBML file of L. lactis glycolysis SBML file of L. lactis glycolysis 2009-11-23 2016-05-12 2009-11-23 Mark Musters FAIRDOMHub Models https://fairdomhub.org/models/26?version=1 SBML Wageningen University & Research Preliminary overview of the effect of KCl stress on protein interaction networks involved in the regulation of the potassium transporter Trk1. Preliminary overview of the effect of KCl stress on protein interaction networks involved in the regulation of the potassium transporter Trk1. 2010-03-12 2010-03-12 2010-03-12 None given (likely automatic harvesting) FAIRDOMHub Models https://fairdomhub.org/models/30?version=1 Transcription factor competition theoretical analysis Transcription factor competition theoretical analysis 2010-04-15 2014-05-28 2010-04-15 Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/31?version=1 Matlab package University of Rostock Mathematical modelling of the sporulation-initiation network in Bacillus subtilis. Mathematical modelling of the sporulation-initiation network in Bacillus subtilis. 2010-06-04 2014-07-16 2010-06-04 Sara Jabbari FAIRDOMHub Models https://fairdomhub.org/models/33?version=1 Matlab package University of Nottingham bakker bakker 2010-10-07 2016-05-12 2010-10-07 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/34?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University bakkerxml bakkerxml 2010-10-07 2016-05-12 2010-10-07 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/36?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University ScoCyc 14.5 release bundle ScoCyc 14.5 release bundle 2010-11-15 2010-11-15 2010-11-15 Jay Moore FAIRDOMHub Models https://fairdomhub.org/models/38?version=2 BioPAX University of Warwick Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum 2011-02-07 2011-02-07 2011-02-07 None given (likely automatic harvesting) FAIRDOMHub Models https://fairdomhub.org/models/42?version=1 SBML solventogenesis solventogenesis 2011-02-15 2016-05-12 2011-02-15 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/43?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University haus1 haus1 2011-02-15 2016-05-12 2011-02-15 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/44?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Kinetic model of Escherichia coli's electron transport chain (ETC) coupled to a simplified growth model Kinetic model of Escherichia coli's electron transport chain (ETC) coupled to a simplified growth model 2011-05-30 2011-05-30 2011-05-30 Sebastian Henkel FAIRDOMHub Models https://fairdomhub.org/models/45?version=2 SBML University of Stuttgart BSA115 Post-transcriptional instability BSA115 Post-transcriptional instability 2011-03-30 2013-01-17 2011-03-30 Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/46?version=14 SBML University of Rostock Test2 Test2 2011-03-08 2016-05-12 2011-03-08 Malgorzata Adamczyk FAIRDOMHub Models https://fairdomhub.org/models/47?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester Warsaw University of Technology BSA sigB-proteolysis model BSA sigB-proteolysis model 2011-03-30 2013-01-17 2011-03-30 Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/48?version=2 SBML University of Rostock BSA115-transcription inhibition model BSA115-transcription inhibition model 2011-03-30 2013-01-17 2011-03-30 Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/49?version=3 SBML University of Rostock BSA115-lacz-synth BSA115-lacz-synth 2011-04-04 2013-01-17 2011-04-04 Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/50?version=2 SBML University of Rostock e.coli-central-carbon_chassagnole-et-al e.coli-central-carbon_chassagnole-et-al 2011-04-05 2011-04-05 2011-04-05 Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/51?version=1 SBML University of Rostock Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - first experiment Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - first experiment 2011-10-12 2012-03-07 2011-10-12 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/55?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - second experiment Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - second experiment 2011-10-12 2012-03-07 2011-10-12 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/56?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - third experiment Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - third experiment 2011-10-12 2012-03-07 2011-10-12 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/57?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - fourth experiment Dynamic shift model of the effect of pH upon solvent production by Clostridium acetobutylicum - fourth experiment 2011-10-12 2012-03-07 2011-10-12 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/58?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Mathematical Modelling of the Sporulation-Initiation Network in Bacillus Subtilis Revealing the Dual Role of the Putative Quorum-Sensing Signal Molecule PhrA Mathematical Modelling of the Sporulation-Initiation Network in Bacillus Subtilis Revealing the Dual Role of the Putative Quorum-Sensing Signal Molecule PhrA 2011-10-12 2012-03-07 2011-10-12 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/59?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Mathematical modelling of the agr operon in Staphylococcus aureus Mathematical modelling of the agr operon in Staphylococcus aureus 2011-10-12 2012-03-07 2011-10-12 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/60?version=1 Manchester Centre for Integrative Systems Biology, University of Manchester Model of Trypanosoma brucei glycolysis as published in Achcar et al. (2012). Model of Trypanosoma brucei glycolysis as published in Achcar et al. (2012). 2012-02-16 2012-02-16 2012-02-16 Fiona Achcar FAIRDOMHub Models https://fairdomhub.org/models/62?version=1 SBML University of Glasgow Model of trypanosomal glycolysis extended with the pentose phosphate pathway (m5) - non-final. Model of trypanosomal glycolysis extended with the pentose phosphate pathway (m5) - non-final. 2012-02-24 2012-02-24 2012-02-24 Eduard Kerkhoven FAIRDOMHub Models https://fairdomhub.org/models/63?version=1 SBML University of Glasgow Chalmers University of Technology Model of trypanosomal glycolysis extended with the pentose phosphate pathway (m6) - non-final. Model of trypanosomal glycolysis extended with the pentose phosphate pathway (m6) - non-final. 2012-02-24 2012-02-24 2012-02-24 Eduard Kerkhoven FAIRDOMHub Models https://fairdomhub.org/models/64?version=1 SBML University of Glasgow Chalmers University of Technology Stressosome-dynamics Stressosome-dynamics 2012-03-16 2012-03-16 2012-03-16 Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/65?version=1 Matlab package University of Rostock pH-dependent steady states of ABE fermetation in C. acetobutylicum pH-dependent steady states of ABE fermetation in C. acetobutylicum 2012-03-23 2014-06-11 2012-03-23 Thomas Millat FAIRDOMHub Models https://fairdomhub.org/models/66?version=1 Matlab package University of Rostock Published kinetic model of glycolysis in L. lactis Published kinetic model of glycolysis in L. lactis 2012-04-02 2012-04-04 2012-04-02 Jennifer Levering FAIRDOMHub Models https://fairdomhub.org/models/69?version=1 SBML University of Heidelberg Published kinetic model of glycolysis in S. pyogenes Published kinetic model of glycolysis in S. pyogenes 2012-04-02 2012-04-04 2012-04-02 Jennifer Levering FAIRDOMHub Models https://fairdomhub.org/models/70?version=1 SBML University of Heidelberg Genome-scale model of Streptococcus pyogenes Genome-scale model of Streptococcus pyogenes 2012-04-04 2016-05-12 2012-04-04 Jennifer Levering FAIRDOMHub Models https://fairdomhub.org/models/71?version=1 SBML University of Heidelberg Script for the calculation of theoretical coil length Script for the calculation of theoretical coil length 2012-04-26 2012-04-26 2012-04-26 Sebastian Curth FAIRDOMHub Models https://fairdomhub.org/models/72?version=1 Matlab package Beuth University of Applied Sciences Berlin Detailed kinetic model of yeast glycolytic oscillation - I Detailed kinetic model of yeast glycolytic oscillation - I 2012-07-16 2012-07-23 2012-07-16 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/74?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - II Detailed kinetic model of yeast glycolytic oscillation - II 2012-07-23 2012-07-23 2012-07-23 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/75?version=3 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - III Detailed kinetic model of yeast glycolytic oscillation - III 2012-07-23 2012-07-23 2012-07-23 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/76?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - IV Detailed kinetic model of yeast glycolytic oscillation - IV 2012-07-23 2012-07-23 2012-07-23 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/77?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - V Detailed kinetic model of yeast glycolytic oscillation - V 2012-07-23 2012-07-23 2012-07-23 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/78?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - VI Detailed kinetic model of yeast glycolytic oscillation - VI 2012-07-23 2012-07-23 2012-07-23 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/79?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Detailed kinetic model of yeast glycolytic oscillation - VII Detailed kinetic model of yeast glycolytic oscillation - VII 2012-07-23 2012-07-23 2012-07-23 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/80?version=2 Manchester Centre for Integrative Systems Biology, University of Manchester Sustained glycolytic oscillations in individual isolated yeast cells - IV Sustained glycolytic oscillations in individual isolated yeast cells - IV 2012-07-23 2012-10-23 2012-07-23 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/81?version=6 Manchester Centre for Integrative Systems Biology, University of Manchester Sustained glycolytic oscillations in individual isolated yeast cells - III Sustained glycolytic oscillations in individual isolated yeast cells - III 2012-07-23 2012-07-23 2012-07-23 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/82?version=3 Manchester Centre for Integrative Systems Biology, University of Manchester Sustained glycolytic oscillations in individual isolated yeast cells - II Sustained glycolytic oscillations in individual isolated yeast cells - II 2012-07-23 2012-07-23 2012-07-23 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/83?version=5 Manchester Centre for Integrative Systems Biology, University of Manchester Sustained glycolytic oscillations in individual isolated yeast cells - I Sustained glycolytic oscillations in individual isolated yeast cells - I 2012-07-23 2012-07-23 2012-07-23 Franco du Preez FAIRDOMHub Models https://fairdomhub.org/models/84?version=3 Manchester Centre for Integrative Systems Biology, University of Manchester SBML model of yeast central carbon metabolism SBML model of yeast central carbon metabolism 2012-10-16 2012-10-16 2012-10-16 Maksim Zakhartsev FAIRDOMHub Models https://fairdomhub.org/models/85?version=1 SBML University of Stuttgart University of Hohenheim Norwegian University of Life Sciences Norwegian University of Science and Technology Monomer Stressosome Model Monomer Stressosome Model 2012-12-07 2013-01-17 2012-12-07 Ulf Liebal FAIRDOMHub Models https://fairdomhub.org/models/88?version=1 Matlab package University of Rostock Draft model of Glycolysis in T. brucei incorporating transcription and translation of the enzymes Draft model of Glycolysis in T. brucei incorporating transcription and translation of the enzymes 2012-12-13 2012-12-13 2012-12-13 Fiona Achcar FAIRDOMHub Models https://fairdomhub.org/models/89?version=1 SBML University of Glasgow Kinetic Model of Lactococcus lactis PYK Kinetic Model of Lactococcus lactis PYK 2012-12-19 2016-05-12 2012-12-19 Nadine Veith FAIRDOMHub Models https://fairdomhub.org/models/90?version=1 SBML University of Heidelberg Compartimented ODE model of oxygen diffusion near E. coli cells Compartimented ODE model of oxygen diffusion near E. coli cells 2013-01-29 2013-01-29 2013-01-29 David Knies FAIRDOMHub Models https://fairdomhub.org/models/91?version=3 SBML University of Stuttgart PDE model of oxygen diffusion near E. coli cells PDE model of oxygen diffusion near E. coli cells 2013-01-29 2013-01-29 2013-01-29 David Knies FAIRDOMHub Models https://fairdomhub.org/models/92?version=2 Mathematica University of Stuttgart L lactis kinetic model L lactis kinetic model 2013-01-03 2016-05-12 2013-01-03 domenico bellomo FAIRDOMHub Models https://fairdomhub.org/models/96?version=1 Matlab package VU University Amsterdam Parameter estimation for a function describing the changing pH level during the pH-induced metabolic shift Parameter estimation for a function describing the changing pH level during the pH-induced metabolic shift 2013-01-05 2013-01-05 2013-01-05 Thomas Millat FAIRDOMHub Models https://fairdomhub.org/models/98?version=1 Matlab package University of Rostock Estimation of an acidogenic and solventogenic population from optical density data observed in 'forward'-shift experiments using continuous cultures of C. acetobutylicum Estimation of an acidogenic and solventogenic population from optical density data observed in 'forward'-shift experiments using continuous cultures of C. acetobutylicum 2013-01-05 2014-06-11 2013-01-05 Thomas Millat FAIRDOMHub Models https://fairdomhub.org/models/99?version=1 Matlab package University of Rostock Model of the pH-induced metabolic shift in phosphate-limited continuous cultures of C. acetobutylicum assuming a phenotypic switch Model of the pH-induced metabolic shift in phosphate-limited continuous cultures of C. acetobutylicum assuming a phenotypic switch 2013-01-06 2013-01-06 2013-01-06 Thomas Millat FAIRDOMHub Models https://fairdomhub.org/models/100?version=1 Matlab package University of Rostock LAB with ATP-driven glucose import of yeast LAB with ATP-driven glucose import of yeast 2013-01-09 2016-05-12 2013-01-09 Ettore Murabito FAIRDOMHub Models https://fairdomhub.org/models/101?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester TFInfer: a tool for probabilistic inference of transcription factor activities TFInfer: a tool for probabilistic inference of transcription factor activities 2013-01-14 2013-01-14 2013-01-14 Guido Sanguinetti FAIRDOMHub Models https://fairdomhub.org/models/102?version=1 University of Edinburgh Agent-based model of response of E.coli to different levels of oxygen supply (with FNR and ArcBA) Agent-based model of response of E.coli to different levels of oxygen supply (with FNR and ArcBA) 2013-01-23 2013-01-28 2013-01-23 Hao Bai FAIRDOMHub Models https://fairdomhub.org/models/105?version=1 University of Sheffield TFinfer2 TFinfer2 2013-01-25 2013-01-28 2013-01-25 Botond Cseke FAIRDOMHub Models https://fairdomhub.org/models/106?version=1 Matlab package University of Edinburgh Models of glycolysis in T. brucei with different levels of permeability of the glycosomes, and with or without cytosolic activities of the glycolytic enzymes. Models of glycolysis in T. brucei with different levels of permeability of the glycosomes, and with or without cytosolic activities of the glycolytic enzymes. 2013-04-03 2013-05-16 2013-04-03 Fiona Achcar FAIRDOMHub Models https://fairdomhub.org/models/107?version=2 SBML University of Glasgow Final model of TryS Final model of TryS 2013-06-18 2014-07-31 2013-06-18 Jurgen Haanstra FAIRDOMHub Models https://fairdomhub.org/models/108?version=2 Copasi University of Groningen VU University Amsterdam PGK Kinetic Model PGK Kinetic Model 2013-08-01 2013-08-01 2013-08-01 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/110?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Model of reconstituted gluconeogenesis system in S. solfataricus Model of reconstituted gluconeogenesis system in S. solfataricus 2013-08-01 2013-09-18 2013-08-01 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/111?version=2 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University FBPAase Kinetic Model FBPAase Kinetic Model 2013-08-01 2013-08-01 2013-08-01 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/112?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University GAPDH Kinetic Model GAPDH Kinetic Model 2013-08-01 2013-08-01 2013-08-01 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/113?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University TPI Kinetic Model TPI Kinetic Model 2013-08-01 2013-08-01 2013-08-01 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/114?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Kinetic Model of Temperature Degradation of Gluconeogenic Intermediates Kinetic Model of Temperature Degradation of Gluconeogenic Intermediates 2013-08-01 2013-08-01 2013-08-01 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/115?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PYK structural models PYK structural models 2014-01-31 2014-01-31 2014-01-31 Nadine Veith FAIRDOMHub Models https://fairdomhub.org/models/116?version=1 University of Heidelberg Part 1: Comparative modeling of 3D structures of LDH enzymes Part 1: Comparative modeling of 3D structures of LDH enzymes 2014-04-22 2014-06-10 2014-04-22 Anna Feldman-Salit FAIRDOMHub Models https://fairdomhub.org/models/118?version=1 Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Heidelberg Part 3: Comparison of electrostatic potentials for FBP binding Part 3: Comparison of electrostatic potentials for FBP binding 2014-04-22 2014-06-10 2014-04-22 Anna Feldman-Salit FAIRDOMHub Models https://fairdomhub.org/models/119?version=1 Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Heidelberg Part 2: Computation of electrostatic potentials for 4 LDH enzymes Part 2: Computation of electrostatic potentials for 4 LDH enzymes 2014-04-22 2014-06-10 2014-04-22 Anna Feldman-Salit FAIRDOMHub Models https://fairdomhub.org/models/120?version=1 Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Heidelberg Part 4: Activation / Inhibition Effect on LDHs function in the presence of Phosphate ions Part 4: Activation / Inhibition Effect on LDHs function in the presence of Phosphate ions 2014-05-07 2014-06-10 2014-05-07 Anna Feldman-Salit FAIRDOMHub Models https://fairdomhub.org/models/121?version=1 Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Heidelberg Part 5: Algorithm to computationally estimate the effect of Pi for 4 LDH enzymes Part 5: Algorithm to computationally estimate the effect of Pi for 4 LDH enzymes 2014-06-10 2014-06-10 2014-06-10 Anna Feldman-Salit FAIRDOMHub Models https://fairdomhub.org/models/122?version=1 Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Heidelberg HK Kinetic model HK Kinetic model 2014-08-08 2014-12-10 2014-08-08 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/124?version=1 Mathematica University of Stellenbosch Stellenbosch University PGI Kinetic model PGI Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/126?version=1 Mathematica University of Stellenbosch Stellenbosch University PFK Kinetic model PFK Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/127?version=1 Mathematica University of Stellenbosch Stellenbosch University ALD Kinetic model ALD Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/128?version=1 Mathematica University of Stellenbosch Stellenbosch University TPI Kinetic model TPI Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/129?version=1 Mathematica University of Stellenbosch Stellenbosch University G3PDH Kinetic model G3PDH Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/130?version=2 Mathematica University of Stellenbosch Stellenbosch University GAPDH Kinetic model GAPDH Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/131?version=2 Mathematica University of Stellenbosch Stellenbosch University PGK Kinetic model PGK Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/132?version=1 Mathematica University of Stellenbosch Stellenbosch University PGM Kinetic model PGM Kinetic model 2014-08-11 2015-03-02 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/133?version=1 Mathematica University of Stellenbosch Stellenbosch University PK Kinetic model PK Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/134?version=1 Mathematica University of Stellenbosch Stellenbosch University LDH Kinetic model LDH Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/135?version=1 Mathematica University of Stellenbosch Stellenbosch University ENO Kinetic model ENO Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/136?version=1 Mathematica University of Stellenbosch Stellenbosch University Kinetic model for incubation (penkler2) Kinetic model for incubation (penkler2) 2014-08-11 2015-07-01 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/138?version=7 SBML University of Stellenbosch Stellenbosch University GLCtr Kinetic model GLCtr Kinetic model 2014-08-11 2015-09-08 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/139?version=2 Mathematica University of Stellenbosch Stellenbosch University GLYtr Kinetic model GLYtr Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/140?version=1 Mathematica University of Stellenbosch Stellenbosch University PYRtr Kinetic model PYRtr Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/141?version=1 Mathematica University of Stellenbosch Stellenbosch University LACtr Kinetic model LACtr Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/142?version=1 Mathematica University of Stellenbosch Stellenbosch University ATPASE Kinetic model ATPASE Kinetic model 2014-08-11 2015-03-03 2014-08-11 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/143?version=1 Mathematica University of Stellenbosch Stellenbosch University Kinetic model for steady state (penkler1) Kinetic model for steady state (penkler1) 2014-08-27 2015-09-15 2014-08-27 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/144?version=8 SBML University of Stellenbosch Stellenbosch University iNS142 RobOKoD Redesigned Butanol Producing. iNS142 RobOKoD Redesigned Butanol Producing. 2015-06-03 2018-08-31 2015-06-03 Natalie Stanford FAIRDOMHub Models https://fairdomhub.org/models/159?version=1 SBML University of Manchester - Department of Computer Science Manchester Centre for Integrative Systems Biology, University of Manchester E.coli Core Model with Beta Oxidation Cycle. E.coli Core Model with Beta Oxidation Cycle. 2015-06-03 2016-06-02 2015-06-03 Natalie Stanford FAIRDOMHub Models https://fairdomhub.org/models/160?version=1 SBML University of Manchester - Department of Computer Science Manchester Centre for Integrative Systems Biology, University of Manchester Kinetic model incorporating glucose transport inhibition (vanniekerk1) Kinetic model incorporating glucose transport inhibition (vanniekerk1) 2015-07-02 2015-11-23 2015-07-02 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/175?version=1 SBML University of Stellenbosch Stellenbosch University GLCtr kinetic model incorporating inhibition GLCtr kinetic model incorporating inhibition 2015-07-02 2015-11-23 2015-07-02 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/176?version=1 Mathematica University of Stellenbosch Stellenbosch University Validation of lactate flux inhibition by glucose transport inhibitor Validation of lactate flux inhibition by glucose transport inhibitor 2015-07-02 2015-11-23 2015-07-02 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/177?version=2 Mathematica University of Stellenbosch Stellenbosch University Supply demand analysis on penkler1 model Supply demand analysis on penkler1 model 2015-07-10 2015-11-23 2015-07-10 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/179?version=1 Mathematica University of Stellenbosch Stellenbosch University Genome-scale metabolic model of Enterococcus faecalis V583 Genome-scale metabolic model of Enterococcus faecalis V583 2015-10-01 2015-10-01 2015-10-01 Nadine Veith FAIRDOMHub Models https://fairdomhub.org/models/180?version=1 SBML University of Heidelberg JAK2/STAT5 model JAK2/STAT5 model 2016-03-03 2016-03-03 2016-03-03 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/185?version=1 SBML University of Stellenbosch Stellenbosch University ZucAt: multi-compartment metabolic model of growing Arabidopsis thaliana ZucAt: multi-compartment metabolic model of growing Arabidopsis thaliana 2016-04-16 2016-06-04 2016-04-16 Maksim Zakhartsev FAIRDOMHub Models https://fairdomhub.org/models/186?version=2 SBML University of Stuttgart University of Hohenheim Norwegian University of Life Sciences Norwegian University of Science and Technology NR model 1 NR model 1 2016-05-17 2016-05-17 2016-05-17 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/187?version=1 SBML University of Stellenbosch Stellenbosch University NR model 2 NR model 2 2016-05-17 2016-05-17 2016-05-17 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/188?version=1 SBML University of Stellenbosch Stellenbosch University NR model 3 NR model 3 2016-05-17 2016-05-17 2016-05-17 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/189?version=1 SBML University of Stellenbosch Stellenbosch University NR model 4 NR model 4 2016-05-17 2016-05-17 2016-05-17 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/190?version=1 SBML University of Stellenbosch Stellenbosch University NR model 5 NR model 5 2016-05-17 2016-05-17 2016-05-17 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/191?version=1 SBML University of Stellenbosch Stellenbosch University NR model 6 NR model 6 2016-05-17 2016-05-17 2016-05-17 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/192?version=1 SBML University of Stellenbosch Stellenbosch University BIOMD0000000005 from BioModels Database BIOMD0000000005 from BioModels Database 2016-05-26 2019-12-16 2016-05-26 Ron Henkel FAIRDOMHub Models https://fairdomhub.org/models/196?version=3 SBML Heidelberg Institute for Theoretical Studies (HITS gGmbH) University of Rostock Metabolic model of Sulfolobus solfataricus Metabolic model of Sulfolobus solfataricus 2016-07-28 2016-10-20 2016-07-28 Jacqueline Wolf FAIRDOMHub Models https://fairdomhub.org/models/225?version=1 SBML University of Braunschweig Hepatic galactose model Hepatic galactose model 2016-08-16 2016-08-16 2016-08-16 Matthias König FAIRDOMHub Models https://fairdomhub.org/models/226?version=1 SBML Charité University Medicine Berlin Humboldt-Universität zu Berlin Humboldt University Berlin Metabolic model of Sulfolobus solfataricus Metabolic model of Sulfolobus solfataricus 2016-10-12 2017-04-24 2016-10-12 Helge Stark FAIRDOMHub Models https://fairdomhub.org/models/231?version=2 SBML University of Braunschweig BaF3 model BaF3 model 2017-01-12 2017-01-12 2017-01-12 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/241?version=1 SBML University of Stellenbosch Stellenbosch University mCFU-E model mCFU-E model 2017-01-12 2017-01-12 2017-01-12 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/242?version=1 SBML University of Stellenbosch Stellenbosch University Arabidopsis clock model P2011.1.2 Arabidopsis clock model P2011.1.2 2017-02-01 2018-03-27 2017-02-01 Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/243?version=1 SBML University of Edinburgh Chew_et_al_2014_Framework_Model version 1, Matlab and Simile Chew_et_al_2014_Framework_Model version 1, Matlab and Simile 2017-02-06 2018-08-22 2017-02-06 Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/247?version=1 Matlab package University of Edinburgh Framework Model v2 Framework Model v2 2017-02-06 2019-12-20 2017-02-06 Daniel Seaton FAIRDOMHub Models https://fairdomhub.org/models/248?version=2 Matlab package University of Edinburgh Hartmut Bossel's Miniworld Hartmut Bossel's Miniworld 2017-02-22 2017-02-22 2017-02-22 Robert Muetzelfeldt FAIRDOMHub Models https://fairdomhub.org/models/249?version=1 University of Edinburgh Genome Scale Metabolic model of M. hyopneumoniae Genome Scale Metabolic model of M. hyopneumoniae 2017-05-03 2019-01-14 2017-05-03 Niels Zondervan FAIRDOMHub Models https://fairdomhub.org/models/267?version=1 SBML Wageningen University & Research Dynamic model of glycolysis, pyruvate metabolism and NoxE in M. pneumonaie with innitial parameter values and annotation Dynamic model of glycolysis, pyruvate metabolism and NoxE in M. pneumonaie with innitial parameter values and annotation 2017-05-15 2019-11-20 2017-05-15 Niels Zondervan FAIRDOMHub Models https://fairdomhub.org/models/269?version=3 SBML Wageningen University & Research Kinetic model of antibiotic-mediated inhibition of ribosomes Kinetic model of antibiotic-mediated inhibition of ribosomes 2017-09-26 2017-09-27 2017-09-26 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/279?version=1 SBML University of Stellenbosch Stellenbosch University PGK yeast with/without recycling PGK yeast with/without recycling 2017-09-28 2017-09-28 2017-09-28 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/280?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PGK yeast Fig1a PGK yeast Fig1a 2017-09-28 2017-09-28 2017-09-28 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/281?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University BPG stability notebook BPG stability notebook 2017-09-29 2019-04-02 2017-09-29 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/282?version=2 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PGK 70C SBML PGK 70C SBML 2017-09-29 2017-09-29 2017-09-29 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/284?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PGK-GAPDH models yeast and Sulfolobus Fig. 4 PGK-GAPDH models yeast and Sulfolobus Fig. 4 2017-09-29 2017-09-29 2017-09-29 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/285?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PGK-GAPDH model yeast kouril7 PGK-GAPDH model yeast kouril7 2017-09-29 2017-09-29 2017-09-29 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/286?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University PGK-GAPDH model Sulfolobus kouril8 PGK-GAPDH model Sulfolobus kouril8 2017-09-29 2017-09-29 2017-09-29 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/287?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Translational coincidence modelling - python scripts Translational coincidence modelling - python scripts 2017-12-04 2018-02-20 2017-12-04 Daniel Seaton FAIRDOMHub Models https://fairdomhub.org/models/298?version=1 University of Edinburgh Estimation of translation and turnover - python scripts Estimation of translation and turnover - python scripts 2018-01-15 2018-02-21 2018-01-15 Daniel Seaton FAIRDOMHub Models https://fairdomhub.org/models/308?version=3 University of Edinburgh Model I - Mathematical model of the growth dynamics of P. aeruginosa in the presence of meropenem Model I - Mathematical model of the growth dynamics of P. aeruginosa in the presence of meropenem 2018-02-06 2018-02-06 2018-02-06 Chloe Spalding FAIRDOMHub Models https://fairdomhub.org/models/310?version=1 University of Birmingham P2011.1.2_directupload P2011.1.2_directupload 2018-03-27 2018-03-27 2018-03-27 Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/314?version=1 SBML University of Edinburgh iKS1317.xml iKS1317.xml 2018-05-14 2019-01-18 2018-05-14 Snorre Sulheim FAIRDOMHub Models https://fairdomhub.org/models/319?version=1 SBML SINTEF Morpheus: open source modelling and simulation framework for multicellular systems Morpheus: open source modelling and simulation framework for multicellular systems 2018-06-08 2018-06-08 2018-06-08 Lutz Brusch FAIRDOMHub Models https://fairdomhub.org/models/320?version=1 SBML Technische Universität Dresden Morpheus model of spatio-temporal Smo regulation in response to Hh signaling Morpheus model of spatio-temporal Smo regulation in response to Hh signaling 2018-06-08 2018-06-08 2018-06-08 Lutz Brusch FAIRDOMHub Models https://fairdomhub.org/models/321?version=1 Technische Universität Dresden Spatio-temporal dynamics of Rab5 domains on the membrane of early endosomes Spatio-temporal dynamics of Rab5 domains on the membrane of early endosomes 2018-06-08 2018-06-08 2018-06-08 Lutz Brusch FAIRDOMHub Models https://fairdomhub.org/models/322?version=1 SBML Technische Universität Dresden gustavsson5 model gustavsson5 model 2018-07-16 2018-07-16 2018-07-16 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/324?version=2 SBML University of Stellenbosch Stellenbosch University gustavsson1-4 models gustavsson1-4 models 2018-07-16 2018-07-16 2018-07-16 Dawie van Niekerk FAIRDOMHub Models https://fairdomhub.org/models/325?version=1 SBML University of Stellenbosch Stellenbosch University Frequency doubling in the cyanobacterial circadian clock Frequency doubling in the cyanobacterial circadian clock 2018-07-30 2018-07-30 2018-07-30 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/326?version=2 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University 3PG - PLM_12, version 1, SUBMITTED 3PG - PLM_12, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/361?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 evapw submodel - PLM_33, version 1, SUBMITTED AFRC Wheat 2 evapw submodel - PLM_33, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/362?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 jdaydif submodel - PLM_34, version 1, SUBMITTED AFRC Wheat 2 jdaydif submodel - PLM_34, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/363?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 julday submodel - PLM_35, version 1, SUBMITTED AFRC Wheat 2 julday submodel - PLM_35, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models 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SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/368?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 vernal submodel - PLM_40, version 1, SUBMITTED AFRC Wheat 2 vernal submodel - PLM_40, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/369?version=1 Simile XML v3 University of Edinburgh AFRC Wheat 2 weathr submodel - PLM_41, version 1, SUBMITTED AFRC Wheat 2 weathr submodel - PLM_41, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/370?version=1 Simile XML v3 University of Edinburgh AFRC Wheat2 dev submodel - PLM_32, version 1, SUBMITTED AFRC Wheat2 dev submodel - PLM_32, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/371?version=1 Simile XML v3 University of Edinburgh Arabidopsis - starch and the circadian 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SBML University of Edinburgh Arabidopsis - starch and the circadian clock, Model 2 (Seaton et al., 2013) - PLM_78, version 1, SIMPLIFIED Arabidopsis - starch and the circadian clock, Model 2 (Seaton et al., 2013) - PLM_78, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/376?version=1 SBML University of Edinburgh Arabidopsis - starch and the circadian clock, Model 3 (Seaton et al., 2013) - PLM_79, version 1, SUBMITTED Arabidopsis - starch and the circadian clock, Model 3 (Seaton et al., 2013) - PLM_79, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/377?version=1 SBML University of Edinburgh Arabidopsis - starch and the circadian clock, Model 3 (Seaton et al., 2013) - PLM_79, version 1, SIMPLIFIED Arabidopsis - starch and the circadian clock, Model 3 (Seaton et al., 2013) - PLM_79, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/378?version=1 SBML University of Edinburgh Arabidopsis clock model P2011, graphical diagram - PLM_1045, version 1, SUBMITTED Arabidopsis clock model P2011, graphical diagram - PLM_1045, version 1, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/379?version=1 SBGN-ML PD University of Edinburgh Arabidopsis clock model P2011.3.1 - PLM_1041, version 1, SUBMITTED Arabidopsis clock model P2011.3.1 - PLM_1041, version 1, SUBMITTED 2019-01-10 2019-12-20 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/380?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.3.1 - PLM_1041, version 1, SIMPLIFIED Arabidopsis clock model P2011.3.1 - PLM_1041, version 1, SIMPLIFIED 2019-01-10 2019-12-20 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/381?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.4.1 - 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PLM_71, version 1, SIMPLIFIED 2019-01-10 2019-12-20 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/389?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.2.1 - PLM_71, version 2, SUBMITTED Arabidopsis clock model P2011.2.1 - PLM_71, version 2, SUBMITTED 2019-01-10 2019-12-20 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/390?version=1 SBML University of Edinburgh Arabidopsis clock model P2011.2.1 - PLM_71, version 2, SIMPLIFIED Arabidopsis clock model P2011.2.1 - PLM_71, version 2, SIMPLIFIED 2019-01-10 2019-12-20 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/391?version=1 SBML University of Edinburgh Arabidopsis leaf carbohydrate model (Rasse and Tocquin) - PLM_2, version 1, SUBMITTED Arabidopsis leaf carbohydrate model (Rasse and Tocquin) - PLM_2, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/392?version=1 Simile XML v3 University of Edinburgh arabidopsis_clock_biopepa - PLM_47, version 1, SUBMITTED arabidopsis_clock_biopepa - PLM_47, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/415?version=1 SBML University of Edinburgh arabidopsis_clock_biopepa - PLM_47, version 1, SIMPLIFIED arabidopsis_clock_biopepa - PLM_47, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/416?version=1 SBML University of Edinburgh Arabidopsis_clock_extend - PLM_6, version 1, SUBMITTED Arabidopsis_clock_extend - PLM_6, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/417?version=1 SBML University of Edinburgh Arabidopsis_clock_extend - PLM_6, version 1, SIMPLIFIED Arabidopsis_clock_extend - PLM_6, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models 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Models https://fairdomhub.org/models/422?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 1, SUBMITTED Arabidopsis_clock_P2011 - PLM_64, version 1, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/423?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 1, SIMPLIFIED Arabidopsis_clock_P2011 - PLM_64, version 1, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/424?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 2, SUBMITTED Arabidopsis_clock_P2011 - PLM_64, version 2, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/425?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 2, SIMPLIFIED Arabidopsis_clock_P2011 - PLM_64, version 2, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/426?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 3, SUBMITTED Arabidopsis_clock_P2011 - PLM_64, version 3, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/427?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 3, SIMPLIFIED Arabidopsis_clock_P2011 - PLM_64, version 3, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/428?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 4, SUBMITTED Arabidopsis_clock_P2011 - PLM_64, version 4, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/429?version=1 SBML University of Edinburgh Arabidopsis_clock_P2011 - PLM_64, version 4, SIMPLIFIED Arabidopsis_clock_P2011 - PLM_64, version 4, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/430?version=1 SBML University of Edinburgh Arabidopsis_clock_P2012 - PLM_70, version 1, SUBMITTED Arabidopsis_clock_P2012 - PLM_70, version 1, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/431?version=1 SBML University of Edinburgh Arabidopsis_clock_P2012 - PLM_70, version 1, SIMPLIFIED Arabidopsis_clock_P2012 - PLM_70, version 1, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/432?version=1 SBML University of Edinburgh Arabidopsis_clock_P2012 - PLM_70, version 2, SUBMITTED Arabidopsis_clock_P2012 - PLM_70, version 2, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/433?version=1 SBML University of Edinburgh Arabidopsis_clock_P2012 - PLM_70, version 2, SIMPLIFIED Arabidopsis_clock_P2012 - PLM_70, version 2, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/434?version=1 SBML University of Edinburgh AuxSim full - PLM_30, version 1, SUBMITTED AuxSim full - PLM_30, version 1, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/450?version=1 Simile XML v3 University of Edinburgh C3 photosynthesis (Farquhar, von Caemmerer, Berry) model - PLM_1, version 1, SUBMITTED C3 photosynthesis (Farquhar, von Caemmerer, Berry) model - PLM_1, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/451?version=1 Simile XML v3 University of Edinburgh Central plant metabolism - PLM_61, version 1, SUBMITTED Central plant metabolism - PLM_61, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/452?version=1 SBGN-ML PD University of Edinburgh CENTURY_Rowe_daily - PLM_22, version 1, SUBMITTED CENTURY_Rowe_daily - PLM_22, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/453?version=1 Simile XML v3 University of Edinburgh Chew_et_al_2012_Photothermal_Model - PLM_73, version 1, SUBMITTED Chew_et_al_2012_Photothermal_Model - PLM_73, version 1, SUBMITTED 2019-01-10 2019-05-07 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/454?version=1 Simile XML v3 University of Edinburgh Chew_et_al_2014_Framework_Model - PLM_76, version 1, SUBMITTED Chew_et_al_2014_Framework_Model - PLM_76, version 1, SUBMITTED 2019-01-10 2019-05-07 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/455?version=1 Simile XML v3 University of Edinburgh DALEC - PLM_23, version 1, SUBMITTED DALEC - PLM_23, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/456?version=1 Simile XML v3 University of Edinburgh DomijanTS_AtClock2011 - PLM_50, version 1, SUBMITTED DomijanTS_AtClock2011 - PLM_50, version 1, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/457?version=1 SBML University of Edinburgh DomijanTS_AtClock2011 - PLM_50, version 1, SIMPLIFIED DomijanTS_AtClock2011 - PLM_50, version 1, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/458?version=1 SBML University of Edinburgh DomijanTS_AtClock2011 - PLM_50, version 2, SUBMITTED DomijanTS_AtClock2011 - PLM_50, version 2, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/459?version=1 SBML University of Edinburgh DomijanTS_AtClock2011 - PLM_50, version 2, SIMPLIFIED DomijanTS_AtClock2011 - PLM_50, version 2, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/460?version=1 SBML University of Edinburgh F2014.1 - PLM_1030, version 1, SUBMITTED F2014.1 - PLM_1030, version 1, SUBMITTED 2019-01-10 2021-08-02 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/465?version=1 SBML University of Edinburgh Glycolysis SBGN - PLM_60, version 1, SUBMITTED Glycolysis SBGN - PLM_60, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/467?version=1 SBGN-ML PD University of Edinburgh Insulin-like growth factor signaling - PLM_62, version 1, SUBMITTED Insulin-like growth factor signaling - PLM_62, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/468?version=1 SBGN-ML PD University of Edinburgh LINTUL - PLM_4, version 1, SUBMITTED LINTUL - PLM_4, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/469?version=1 Simile XML v3 University of Edinburgh LINTUL_V2 - PLM_42, version 1, SUBMITTED LINTUL_V2 - PLM_42, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/470?version=1 Simile XML v3 University of Edinburgh Locke2005_CircadianClock_tanh - PLM_8, version 1, SUBMITTED Locke2005_CircadianClock_tanh - PLM_8, version 1, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/471?version=1 SBML University of Edinburgh Locke2005_CircadianClock_tanh - PLM_8, version 1, SIMPLIFIED Locke2005_CircadianClock_tanh - PLM_8, version 1, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/472?version=1 SBML University of Edinburgh Locke2006_CircadianClock_tanh - PLM_10, version 1, SUBMITTED Locke2006_CircadianClock_tanh - PLM_10, version 1, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/473?version=1 SBML University of Edinburgh Locke2006_CircadianClock_tanh - PLM_10, version 1, SIMPLIFIED Locke2006_CircadianClock_tanh - PLM_10, version 1, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/474?version=1 SBML University of Edinburgh McMurtrie vegetation model - PLM_11, version 1, SUBMITTED McMurtrie vegetation model - PLM_11, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/477?version=1 Simile XML v3 University of Edinburgh McMurtrie vegetation model - PLM_11, version 2, SUBMITTED McMurtrie vegetation model - PLM_11, version 2, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/478?version=1 Simile XML v3 University of Edinburgh Miscanmod - PLM_3, version 1, SUBMITTED Miscanmod - PLM_3, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/479?version=1 Simile XML v3 University of Edinburgh Modelling circadian regulation of flowering time and hypocotyl elongation, Seaton et al., 2015 - PLM_1010, version 1, SUBMITTED Modelling circadian regulation of flowering time and hypocotyl elongation, Seaton et al., 2015 - PLM_1010, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/480?version=1 SBML University of Edinburgh Modelling circadian regulation of flowering time and hypocotyl elongation, Seaton et al., 2015 - PLM_1010, version 1, SIMPLIFIED Modelling circadian regulation of flowering time and hypocotyl elongation, Seaton et al., 2015 - PLM_1010, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/481?version=1 SBML University of Edinburgh Modified Locke Arabadopsis 3 loop Circadian Clock - PLM_66, version 1, SUBMITTED Modified Locke Arabadopsis 3 loop Circadian Clock - PLM_66, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/482?version=1 SBML University of Edinburgh Modified Locke Arabadopsis 3 loop Circadian Clock - PLM_66, version 1, SIMPLIFIED Modified Locke Arabadopsis 3 loop Circadian Clock - PLM_66, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/483?version=1 SBML University of Edinburgh Neuronal muscle signalling - PLM_63, version 1, SUBMITTED Neuronal muscle signalling - PLM_63, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/484?version=1 SBGN-ML PD University of Edinburgh Neurospora Circadian Clock 3-variable model - PLM_51, version 1, SUBMITTED Neurospora Circadian Clock 3-variable model - PLM_51, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/485?version=1 SBML University of Edinburgh Neurospora Circadian Clock 3-variable model - PLM_51, version 1, SIMPLIFIED Neurospora Circadian Clock 3-variable model - PLM_51, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/486?version=1 SBML University of Edinburgh Neurospora Circadian Clock 3-variable model - sinusoidal light oscillations - PLM_52, version 1, SUBMITTED Neurospora Circadian Clock 3-variable model - sinusoidal light oscillations - PLM_52, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/487?version=1 SBML University of Edinburgh Neurospora Circadian Clock 3-variable model - sinusoidal light oscillations - PLM_52, version 1, SIMPLIFIED Neurospora Circadian Clock 3-variable model - sinusoidal light oscillations - PLM_52, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/488?version=1 SBML University of Edinburgh Part_of_Christophe_et_al_2008_Functional_Structural_Plant_Model - PLM_75, version 1, SUBMITTED Part_of_Christophe_et_al_2008_Functional_Structural_Plant_Model - PLM_75, version 1, SUBMITTED 2019-01-10 2019-05-07 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/495?version=1 Simile XML v3 University of Edinburgh Salazar2009_FloweringPhotoperiod - PLM_9, version 1, SUBMITTED Salazar2009_FloweringPhotoperiod - PLM_9, version 1, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/499?version=1 SBML University of Edinburgh Salazar2009_FloweringPhotoperiod - PLM_9, version 1, SIMPLIFIED Salazar2009_FloweringPhotoperiod - PLM_9, version 1, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/500?version=1 SBML University of Edinburgh Salazar2009_FloweringPhotoperiod - PLM_9, version 2, SUBMITTED Salazar2009_FloweringPhotoperiod - PLM_9, version 2, SUBMITTED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/501?version=1 SBML University of Edinburgh Salazar2009_FloweringPhotoperiod - PLM_9, version 2, SIMPLIFIED Salazar2009_FloweringPhotoperiod - PLM_9, version 2, SIMPLIFIED 2019-01-10 2019-01-22 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/502?version=1 SBML University of Edinburgh Salazar_et_al_2009_Photoperiodism_Model - PLM_74, version 1, SUBMITTED Salazar_et_al_2009_Photoperiodism_Model - PLM_74, version 1, SUBMITTED 2019-01-10 2019-05-07 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/503?version=1 Simile XML v3 University of Edinburgh SUCROS1 - PLM_24, version 1, SUBMITTED SUCROS1 - PLM_24, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/506?version=1 Simile XML v3 University of Edinburgh T2011 Ostreococcus clock, acc immediate - PLM_83, version 1, SUBMITTED T2011 Ostreococcus clock, acc immediate - PLM_83, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/507?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, acc immediate - PLM_83, version 1, SIMPLIFIED T2011 Ostreococcus clock, acc immediate - PLM_83, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/508?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, acc on - PLM_84, version 1, SUBMITTED T2011 Ostreococcus clock, acc on - PLM_84, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/509?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, acc on - PLM_84, version 1, SIMPLIFIED T2011 Ostreococcus clock, acc on - PLM_84, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/510?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 degr D - PLM_86, version 1, SUBMITTED T2011 Ostreococcus clock, CCA1 degr D - PLM_86, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/511?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 degr D - PLM_86, version 1, SIMPLIFIED T2011 Ostreococcus clock, CCA1 degr D - PLM_86, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/512?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 degr L - PLM_85, version 1, SUBMITTED T2011 Ostreococcus clock, CCA1 degr L - PLM_85, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/513?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 degr L - PLM_85, version 1, SIMPLIFIED T2011 Ostreococcus clock, CCA1 degr L - PLM_85, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/514?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 prod D - PLM_88, version 1, SUBMITTED T2011 Ostreococcus clock, CCA1 prod D - PLM_88, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/515?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 prod D - PLM_88, version 1, SIMPLIFIED T2011 Ostreococcus clock, CCA1 prod D - PLM_88, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/516?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 prod L - PLM_87, version 1, SUBMITTED T2011 Ostreococcus clock, CCA1 prod L - PLM_87, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/517?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, CCA1 prod L - PLM_87, version 1, SIMPLIFIED T2011 Ostreococcus clock, CCA1 prod L - PLM_87, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/518?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 act D - PLM_92, version 1, SUBMITTED T2011 Ostreococcus clock, TOC1 act D - PLM_92, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/519?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 act D - PLM_92, version 1, SIMPLIFIED T2011 Ostreococcus clock, TOC1 act D - PLM_92, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/520?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 act L - PLM_91, version 1, SUBMITTED T2011 Ostreococcus clock, TOC1 act L - PLM_91, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/521?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 act L - PLM_91, version 1, SIMPLIFIED T2011 Ostreococcus clock, TOC1 act L - PLM_91, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/522?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr D - PLM_90, version 1, SUBMITTED T2011 Ostreococcus clock, TOC1 degr D - PLM_90, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/523?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr D - PLM_90, version 1, SIMPLIFIED T2011 Ostreococcus clock, TOC1 degr D - PLM_90, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/524?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 1, SUBMITTED T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/525?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 1, SIMPLIFIED T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/526?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 2, SUBMITTED T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 2, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/527?version=1 SBML University of Edinburgh T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 2, SIMPLIFIED T2011 Ostreococcus clock, TOC1 degr L - PLM_89, version 2, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/528?version=1 SBML University of Edinburgh TRIFFID - PLM_5, version 1, SUBMITTED TRIFFID - PLM_5, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/538?version=1 Simile XML v3 University of Edinburgh Troein Ostreococcus clock 1-loop - PLM_7, version 1, SUBMITTED Troein Ostreococcus clock 1-loop - PLM_7, version 1, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/539?version=1 SBML University of Edinburgh Troein Ostreococcus clock 1-loop - PLM_7, version 1, SIMPLIFIED Troein Ostreococcus clock 1-loop - PLM_7, version 1, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/540?version=1 SBML University of Edinburgh Troein Ostreococcus clock 1-loop - PLM_7, version 2, SUBMITTED Troein Ostreococcus clock 1-loop - PLM_7, version 2, SUBMITTED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/541?version=1 SBML University of Edinburgh Troein Ostreococcus clock 1-loop - PLM_7, version 2, SIMPLIFIED Troein Ostreococcus clock 1-loop - PLM_7, version 2, SIMPLIFIED 2019-01-10 2019-01-10 2019-01-10 BioData SynthSys FAIRDOMHub Models https://fairdomhub.org/models/542?version=1 SBML University of Edinburgh Core model of glycolysis, pyruvate metabolism ATPase + NoxE reaction Core model of glycolysis, pyruvate metabolism ATPase + NoxE reaction 2019-01-13 2019-01-14 2019-01-13 Niels Zondervan FAIRDOMHub Models https://fairdomhub.org/models/548?version=1 Copasi Wageningen University & Research Yeast_deFBA Model Yeast_deFBA Model 2019-03-11 2019-03-11 2019-03-11 Henning Lindhorst FAIRDOMHub Models https://fairdomhub.org/models/555?version=1 SBML Otto-von-Guericke University Magdeburg Enzymatic Growth Model Enzymatic Growth Model 2019-03-11 2019-03-11 2019-03-11 Henning Lindhorst FAIRDOMHub Models https://fairdomhub.org/models/556?version=1 SBML Otto-von-Guericke University Magdeburg Carbon Core deFBA Model Carbon Core deFBA Model 2019-03-11 2019-03-11 2019-03-11 Henning Lindhorst FAIRDOMHub Models https://fairdomhub.org/models/557?version=1 SBML Otto-von-Guericke University Magdeburg Resource Allocation Model Resource Allocation Model 2019-03-11 2019-03-11 2019-03-11 Henning Lindhorst FAIRDOMHub Models https://fairdomhub.org/models/558?version=1 SBML Otto-von-Guericke University Magdeburg PGK 70C PGK 70C 2019-03-17 2019-03-17 2019-03-17 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/559?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University XDH model XDH model 2019-03-27 2020-01-06 2019-03-27 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/565?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University XLA model XLA model 2019-03-27 2020-01-06 2019-03-27 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/566?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University XAD model XAD model 2019-03-27 2020-01-06 2019-03-27 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/567?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University KDXD model KDXD model 2019-03-28 2020-01-06 2019-03-28 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/568?version=1 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University KGSADH model KGSADH model 2019-03-29 2020-01-06 2019-03-29 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/570?version=2 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Detailed model of ROS management Detailed model of ROS management 2019-03-30 2019-04-01 2019-03-30 Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/571?version=1 Copasi University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) One-Pot-Cascade 13 One-Pot-Cascade 13 2019-04-10 2020-01-06 2019-04-10 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/592?version=2 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University One-Pot-Cascade 10 One-Pot-Cascade 10 2019-04-10 2020-01-06 2019-04-10 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/594?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis XDH Progress curve analysis XDH 2019-04-12 2020-01-08 2019-04-12 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/599?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis XLA Progress curve analysis XLA 2019-04-12 2020-01-08 2019-04-12 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/600?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis XAD Progress curve analysis XAD 2019-04-12 2020-01-08 2019-04-12 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/601?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis KDXD Progress curve analysis KDXD 2019-04-12 2020-01-08 2019-04-12 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/602?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis KGSADH Progress curve analysis KGSADH 2019-04-12 2020-01-08 2019-04-12 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/603?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis combined Progress curve analysis combined 2019-04-12 2020-01-08 2019-04-12 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/604?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University One pot cascade 12 One pot cascade 12 2019-04-12 2020-01-08 2019-04-12 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/605?version=4 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University One pot cascade 16 One pot cascade 16 2019-04-12 2020-01-06 2019-04-12 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/607?version=2 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Progress curve analysis (shen1) Progress curve analysis (shen1) 2019-04-15 2020-01-06 2019-04-15 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/609?version=2 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Cascade analysis (shen2) Cascade analysis (shen2) 2019-04-15 2020-01-06 2019-04-15 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/610?version=2 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University CFE Mn NADrec CFE Mn NADrec 2019-04-16 2020-01-06 2019-04-16 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/611?version=2 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University CFE no Mn, with NADrec CFE no Mn, with NADrec 2019-04-16 2020-01-06 2019-04-16 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/613?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University CFE Mn noNADrec CFE Mn noNADrec 2019-04-16 2020-01-08 2019-04-16 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/614?version=3 Mathematica Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University CFE analysis (shen2) CFE analysis (shen2) 2019-04-16 2020-01-06 2019-04-16 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/615?version=2 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University yeast-GEM 8.3.3 yeast-GEM 8.3.3 2019-04-28 2019-04-28 2019-04-28 Eduard Kerkhoven FAIRDOMHub Models https://fairdomhub.org/models/616?version=1 SBML University of Glasgow Chalmers University of Technology Breast cancer development model Breast cancer development model 2019-08-20 2020-10-08 2019-08-20 Hannah O'Keefe FAIRDOMHub Models https://fairdomhub.org/models/627?version=8 University of Newcastle-upon-Tyne University of Newcastle Dermal cellular senescence model Dermal cellular senescence model 2019-08-20 2019-08-20 2019-08-20 Hannah O'Keefe FAIRDOMHub Models https://fairdomhub.org/models/628?version=1 University of Newcastle-upon-Tyne University of Newcastle Standard model of acute inflammation Abudulikemu et al 2020 Standard model of acute inflammation Abudulikemu et al 2020 2019-11-05 2019-11-05 2019-11-05 Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/638?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam Innate inflammation homo sapiens Innate inflammation homo sapiens 2019-11-05 2019-11-05 2019-11-05 Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/639?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam Innate Inflammation; model 2018 Innate Inflammation; model 2018 2019-11-05 2019-11-05 2019-11-05 Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/640?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam Calibrated comprehensive model of ROS management Calibrated comprehensive model of ROS management 2019-11-25 2019-11-25 2019-11-25 Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/643?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam CFE steady state analysis (shen3) CFE steady state analysis (shen3) 2019-11-29 2020-01-06 2019-11-29 Jacky Snoep FAIRDOMHub Models https://fairdomhub.org/models/644?version=1 SBML Manchester Centre for Integrative Systems Biology, University of Manchester University of Stellenbosch University of Manchester - Department of Computer Science Stellenbosch University Copasi file chronic inflammation Abulikemu et al 2020 (altered units TNF and MMP8) homo sapiens Copasi file chronic inflammation Abulikemu et al 2020 (altered units TNF and MMP8) homo sapiens 2019-11-29 2019-11-29 2019-11-29 Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/645?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam Copasi file acute inflammation Abulikemu et al 2020 (altered units TNF and MMP8) homo sapiens Copasi file acute inflammation Abulikemu et al 2020 (altered units TNF and MMP8) homo sapiens 2019-11-29 2019-11-29 2019-11-29 Hans V. Westerhoff FAIRDOMHub Models https://fairdomhub.org/models/646?version=1 Copasi Manchester Centre for Integrative Systems Biology, University of Manchester VU University Amsterdam University of Amsterdam Systems Biology Amsterdam P2011.3.1 Copasi P2011.3.1 Copasi 2019-12-20 2019-12-20 2019-12-20 Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/654?version=1 Copasi University of Edinburgh P2011.6.1 Copasi P2011.6.1 Copasi 2019-12-20 2019-12-20 2019-12-20 Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/655?version=1 Copasi University of Edinburgh F2014.1.2 with stepfunction F2014.1.2 with stepfunction 2019-12-20 2019-12-20 2019-12-20 Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/659?version=1 SBML University of Edinburgh F2014.1.2 Copasi F2014.1.2 Copasi 2019-12-20 2019-12-20 2019-12-20 Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/660?version=1 Copasi University of Edinburgh P2011.1.2 SBML P2011.1.2 SBML 2019-12-20 2021-07-30 2019-12-20 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/661?version=2 SBML University of Edinburgh Heinrich Heine University of Düsseldorf F2014 all parameters in SBML F2014 all parameters in SBML 2019-12-20 2019-12-20 2019-12-20 Andrew Millar FAIRDOMHub Models https://fairdomhub.org/models/662?version=1 SBML University of Edinburgh P2011.1.2 Antimony P2011.1.2 Antimony 2019-12-20 2021-07-30 2019-12-20 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/663?version=2 University of Edinburgh Heinrich Heine University of Düsseldorf Salb-GEM.xml Salb-GEM.xml 2020-02-26 2020-02-26 2020-02-26 Cheewin Kittikunapong FAIRDOMHub Models https://fairdomhub.org/models/688?version=1 SBML Chalmers University of Technology Comprehensive model for COVID-19 caused by SARS-CoV-2 Comprehensive model for COVID-19 caused by SARS-CoV-2 2020-03-24 2020-04-15 2020-03-24 Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/693?version=1 Copasi University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) Renz2020 - GEM of Human alveolar macrophage with SARS-CoV-2 Renz2020 - GEM of Human alveolar macrophage with SARS-CoV-2 2020-04-03 2020-05-26 2020-04-03 Martin Golebiewski FAIRDOMHub Models https://fairdomhub.org/models/699?version=1 SBML Heidelberg Institute for Theoretical Studies (HITS gGmbH) COVIDPathways - WikiPathways COVIDPathways - WikiPathways 2020-04-06 2020-04-06 2020-04-06 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/700?version=1 Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) PAMP signaling (COVID-19 Disease Map) PAMP signaling (COVID-19 Disease Map) 2020-04-06 2020-06-24 2020-04-06 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/701?version=4 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Orf10 Cul2 pathway 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2020-04-20 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/708?version=5 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Renin-angiotensin pathway (COVID-19 Disease Map) Renin-angiotensin pathway (COVID-19 Disease Map) 2020-04-20 2021-06-11 2020-04-20 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/709?version=5 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) The impact of Nsp14 on metabolism (COVID-19 Disease Map) The impact of Nsp14 on metabolism (COVID-19 Disease Map) 2020-04-23 2020-06-25 2020-04-23 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/710?version=3 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) ER stress (COVID-19 Disease Map) ER stress (COVID-19 Disease Map) 2020-04-23 2020-08-17 2020-04-23 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/711?version=3 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Apoptosis pathway (COVID-19 Disease Map) Apoptosis pathway (COVID-19 Disease Map) 2020-04-23 2021-06-11 2020-04-23 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/712?version=4 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Interferon 1 pathway (COVID-19 Disease Map) Interferon 1 pathway (COVID-19 Disease Map) 2020-04-23 2021-06-11 2020-04-23 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/713?version=5 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) SBML Qual models of selected COVID-19 Disease Map diagrams SBML Qual models of selected COVID-19 Disease Map diagrams 2020-04-23 2020-04-23 2020-04-23 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/714?version=1 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) HMOX1 pathway 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2020-05-07 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/727?version=3 SBML University of Edinburgh Heinrich Heine University of Düsseldorf U2019.3 U2019.3 2020-05-07 2021-07-31 2020-05-07 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/728?version=3 SBML University of Edinburgh Heinrich Heine University of Düsseldorf U2020.1 U2020.1 2020-05-07 2021-07-31 2020-05-07 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/729?version=3 SBML University of Edinburgh Heinrich Heine University of Düsseldorf U2020.2 U2020.2 2020-05-07 2021-07-31 2020-05-07 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/730?version=3 SBML University of Edinburgh Heinrich Heine University of Düsseldorf U2020.3 U2020.3 2020-05-07 2021-07-31 2020-05-07 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/731?version=2 SBML University of Edinburgh Heinrich Heine University of Düsseldorf Calibrated comprehensive model of ROS management (no attachment, for the right version see http://doi.org/10.15490/FAIRDOMHUB.1.MODEL.734.1) Calibrated comprehensive model of ROS management (no attachment, for the right version see http://doi.org/10.15490/FAIRDOMHUB.1.MODEL.734.1) 2020-05-09 2020-05-09 2020-05-09 Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/732?version=1 Copasi University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) Calibrated comprehensive model of ROS management Improved Calibrated comprehensive model of ROS management Improved 2020-05-09 2020-05-09 2020-05-09 Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/734?version=1 Copasi University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) JNK pathway (COVID-19 Disease Map) JNK pathway (COVID-19 Disease Map) 2020-05-20 2020-06-24 2020-05-20 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/735?version=3 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Nsp9 interactions (COVID-19 Disease Map) Nsp9 interactions (COVID-19 Disease Map) 2020-05-20 2020-08-19 2020-05-20 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/736?version=4 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Virus replication cycle in mEPN/SBGN (COVID-19 Disease Map) Virus replication cycle in mEPN/SBGN (COVID-19 Disease Map) 2020-06-08 2020-06-08 2020-06-08 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/737?version=1 Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) COVID-19 SIGNOR dataset COVID-19 SIGNOR dataset 2020-06-26 2020-06-29 2020-06-26 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/738?version=2 Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Main Figure 2 COPASI Main Figure 2 COPASI 2020-07-10 2020-07-20 2020-07-10 Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/739?version=1 University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) Main Figure 3 Main Figure 3 2020-07-10 2020-07-10 2020-07-10 Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/740?version=1 University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) Main Figure 4 Models_Copasi Main Figure 4 Models_Copasi 2020-07-12 2020-07-12 2020-07-12 Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/742?version=1 University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) Figure-3_Detailed Model Diagram Figure-3_Detailed Model Diagram 2020-07-16 2020-07-16 2020-07-16 Alexey Kolodkin FAIRDOMHub Models https://fairdomhub.org/models/743?version=1 SBML University of Amsterdam VU University Amsterdam Infrastructure Systems Biology Europe University of Luxembourg Luxembourg Centre for Systems Biomedicine (LCSB) framework model v1_5 framework model v1_5 2020-08-14 2020-08-14 2020-08-14 Hannah Kinmonth-Schultz FAIRDOMHub Models https://fairdomhub.org/models/747?version=1 Matlab package University of Washington, Environmental and Forest Sciences SARS-CoV-2 coagulation pathway (COVID-19 Disease Map) SARS-CoV-2 coagulation pathway (COVID-19 Disease Map) 2020-08-17 2021-06-15 2020-08-17 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/749?version=1 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Interferon lambda pathway (COVID-19 Disease Map) Interferon lambda pathway (COVID-19 Disease Map) 2020-08-18 2021-06-11 2020-08-18 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/750?version=2 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) Pyrimidine synthesis and deprivation pathway (COVID-19 Disease Maps) Pyrimidine synthesis and deprivation pathway (COVID-19 Disease Maps) 2020-08-19 2020-08-19 2020-08-19 Marek Ostaszewski FAIRDOMHub Models https://fairdomhub.org/models/752?version=1 SBML Kinetics on the move Workshop at HITS Luxembourg Centre for Systems Biomedicine (LCSB) ec-iML1515 ec-iML1515 2020-08-31 2020-08-31 2020-08-31 Cheewin Kittikunapong FAIRDOMHub Models https://fairdomhub.org/models/754?version=1 SBML Chalmers University of Technology Model WT + Mutants, Vilardaga Paper Model WT + Mutants, Vilardaga Paper 2020-10-05 2020-10-05 2020-10-05 Maria Krantz FAIRDOMHub Models https://fairdomhub.org/models/755?version=1 Humboldt-Universität zu Berlin Draft metabolic reconstruction model of Atlantic cod liver generated from gadMor3 and iHepatocyte2322 Draft metabolic reconstruction model of Atlantic cod liver generated from gadMor3 and iHepatocyte2322 2020-10-09 2020-10-09 2020-10-09 Xiaokang Zhang FAIRDOMHub Models https://fairdomhub.org/models/756?version=1 SBML University of Bergen Draft metabolic reconstruction model of Atlantic cod liver generated from gadMorTrinity and iHepatocyte2322 Draft metabolic reconstruction model of Atlantic cod liver generated from gadMorTrinity and iHepatocyte2322 2020-10-09 2020-10-09 2020-10-09 Xiaokang Zhang FAIRDOMHub Models https://fairdomhub.org/models/757?version=1 SBML University of Bergen Draft metabolic reconstruction model of Atlantic cod liver generated from gadMor1 and iHepatocyte2322 Draft metabolic reconstruction model of Atlantic cod liver generated from gadMor1 and iHepatocyte2322 2020-10-09 2020-10-09 2020-10-09 Xiaokang Zhang FAIRDOMHub Models https://fairdomhub.org/models/758?version=1 SBML University of Bergen Morpheus model of spatio-temporal liver zonation from Wnt-Hh crosstalk Morpheus model of spatio-temporal liver zonation from Wnt-Hh crosstalk 2020-11-27 2020-11-27 2020-11-27 Lutz Brusch FAIRDOMHub Models https://fairdomhub.org/models/759?version=1 Technische Universität Dresden Morpheus model of spatio-temporal YAP/Hippo pathway activation during liver regeneration Morpheus model of spatio-temporal YAP/Hippo pathway activation during liver regeneration 2020-11-27 2020-11-27 2020-11-27 Lutz Brusch FAIRDOMHub Models https://fairdomhub.org/models/760?version=1 Technische Universität Dresden Data and Jupyter notebooks for our analysis on Glial cell detection Data and Jupyter notebooks for our analysis on Glial cell detection 2021-01-21 2021-01-21 2021-01-21 Saptarshi Bej FAIRDOMHub Models https://fairdomhub.org/models/765?version=1 University of Rostock Data and Jupyter notebooks for our analysis on Proliferative Cardiomyocyte detection Data and Jupyter notebooks for our analysis on Proliferative Cardiomyocyte detection 2021-01-21 2021-01-21 2021-01-21 Markus Wolfien FAIRDOMHub Models https://fairdomhub.org/models/766?version=1 University of Rostock ec-iJN1462 ec-iJN1462 2021-02-26 2021-02-26 2021-02-26 Cheewin Kittikunapong FAIRDOMHub Models https://fairdomhub.org/models/769?version=1 SBML Chalmers University of Technology ec-Salb-GEM ec-Salb-GEM 2021-02-26 2021-02-26 2021-02-26 Cheewin Kittikunapong FAIRDOMHub Models https://fairdomhub.org/models/770?version=1 SBML Chalmers University of Technology U2019.1_ISSF U2019.1_ISSF 2021-03-01 2021-03-01 2021-03-01 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/771?version=1 SBML University of Edinburgh Heinrich Heine University of Düsseldorf U2019.2_ISSF U2019.2_ISSF 2021-03-01 2021-03-01 2021-03-01 Uriel Urquiza Garcia FAIRDOMHub Models https://fairdomhub.org/models/772?version=1 SBML University of Edinburgh Heinrich Heine University of Düsseldorf U2019.3_ISSF U2019.3_ISSF 2021-03-01 2021-03-01 2021-03-01 Uriel Urquiza Garcia 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