../../_A_02_cdhit_3cvs-GFFmerged/output/annot.alias.aa.tsv
../../_A_02_cdhit_3cvs-GFFmerged/output/annot.alias.cds.tsv

../../_A_03_components_3cvs-GFFmerged/output/stPanTr.aa.fasta
../../_A_03_components_3cvs-GFFmerged/output/stPanTr_rep.aa.fasta
../../_A_03_components_3cvs-GFFmerged/output/stPanTr_alt.aa.fasta

../../_A_03_components_3cvs-GFFmerged/output/stPanTr.cds.fasta
../../_A_03_components_3cvs-GFFmerged/output/stPanTr_rep.cds.fasta
../../_A_03_components_3cvs-GFFmerged/output/stPanTr_alt.cds.fasta


../../../_S_03_stCuSTr/_A_03.2_components/output/fasta_1A_rep-per-cv/
../../../_S_03_stCuSTr/_A_03.2_components/output/fasta_1B_alt-per-cv/
../../../_S_03_stCuSTr/_A_03.2_components/output/fasta_2_all-per-cv/